Citrus Sinensis ID: 020094

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHccccccHHHHHcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccccccEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccEccc
Coil and Loop (DISEMBL)
mllrssstpilhswlpqyskdsssssssnsstepeLQVLQRtrsvslsddhhhhqsrkHKLLTTIYQRKEIrdsqmnkkgniralkpppashshdhhqakesSSRIQRLFsssglgekllkkddddekegcevedgggsYVQTMVMggglgnnggkicdgrgggdaggggggsgfsgsnnnysnnnhgssstdAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRailanpsdgniLSLYADLIWQAHKDASRAESYFDqavksapddcYVLASYAKFLwdagddeeeeqdneesqhqtdhshtsppnffhgashhspltaas
Flexible Loop (DISEMBL)
mllrssstpilhswlpqysKDSSSSSSSNSSTEPELQVLQRTRSVslsddhhhhqsrkhkllttiYQRKEIRDSQMNKKGNIRALKPPPASHShdhhqakesssriqrlfsssglgekllkkddddekegcevedgggsyVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS
Low Complexity Region (SEG)
MLLRSSSTPILHSWLPQYSKDsssssssnssTEPELQVLQRTRSVSLSDDHHHHQSRKHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKEsssriqrlfsssglgekllkkddddekegcevedgggSYVQTMVMggglgnnggkicdgrgggdaggggggsgfsgsnnnysnnnhgsssTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGddeeeeqdneeSQHQTDHSHTSPPNFFHGASHHSPLTAAS
Disordered region (IsUnstruct)
*******************************************************************************************************************************************YVQTMVMGG**********************************************YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA*****************************************
Disordered Region (DISOPRED)
MLLRSSSTPILHSW**************************************************************************************************************************GGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSPPNFFHGASH********
Disordered Region (DISEMBL)
MLLRSSSTPILHSWLP********************************************LLTTIYQRKEIRDSQMNKKGNIRALK*********************RLFSSSGLGEKLL*************EDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH********YFDQAVKSAPDDCYVLASYAKFLWDAG*********************SPPNFFHGA**********
Disordered Region (DISPRO)
*****************************************************************************************************************************************GSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQT**SHTSPPNFFHGASHH*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
255553177	305	conserved hypothetical protein [Ricinus	0.888	0.963	0.514	9e-66
449436142	319	PREDICTED: uncharacterized protein LOC10	0.921	0.956	0.498	4e-64
118486453	304	unknown [Populus trichocarpa]	0.876	0.953	0.459	6e-60
225442971	306	PREDICTED: uncharacterized protein LOC10	0.897	0.970	0.461	8e-57
224144206	307	predicted protein [Populus trichocarpa]	0.888	0.957	0.447	4e-56
297743453	289	unnamed protein product [Vitis vinifera]	0.864	0.989	0.464	6e-56
356519331	315	PREDICTED: uncharacterized protein LOC10	0.903	0.949	0.456	4e-55
147823174	306	hypothetical protein VITISV_012768 [Viti	0.906	0.980	0.448	5e-55
225445531	288	PREDICTED: uncharacterized protein LOC10	0.845	0.972	0.437	8e-52
356555346	282	PREDICTED: uncharacterized protein LOC10	0.812	0.953	0.410	9e-52

>gi|255553177|ref|XP_002517631.1| conserved hypothetical protein [Ricinus communis] gi|223543263|gb|EEF44795.1| conserved hypothetical protein [Ricinus communis]

 Score =  256 bits (654), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 176/342 (51%), Positives = 222/342 (64%), Gaps = 48/342 (14%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHK 60
           MLLRSSSTPIL+SWLP          S  SS EPE Q L+RT+S+SL+       S   K
Sbjct: 1   MLLRSSSTPILNSWLPH---------SKESSPEPEFQALKRTKSISLTGSFRSQPSFDDK 51

Query: 61  LLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSH-----DHHQAKES---SSRIQRLFSS 112
            +TT    + ++++ + K  N    +PP +         D    KE+   SSRIQR+FSS
Sbjct: 52  KVTT----QTLQETNLQKIKNASHGRPPQSKKQQCKKDSDDEIKKEAIVPSSRIQRMFSS 107

Query: 113 SGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGG---G 169
           SGLG ++    +DD+ +  E E+G G  +QT+V+GGG G+ GG    G  GG        
Sbjct: 108 SGLGGRVA---NDDDDDDDEKEEGRG--LQTLVVGGGSGSGGGGGVCGGSGGRRSDGGES 162

Query: 170 GGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE 229
            GGS F           +G+ STDAYY+KMI A+PGNALLLGNYA+FLKEV+GDFAKAEE
Sbjct: 163 NGGSEF-----------YGNESTDAYYQKMISADPGNALLLGNYAKFLKEVKGDFAKAEE 211

Query: 230 LCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289
            CGRAILANPSDGN+LS+YADLIWQ  KDA RAESYFDQAVK+AP+DC+VLASYA+FLWD
Sbjct: 212 FCGRAILANPSDGNVLSVYADLIWQKEKDAERAESYFDQAVKTAPEDCFVLASYARFLWD 271

Query: 290 AGDDEEEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
           A ++EE+E ++E+  H+T     SP  FF+G     PL AAS
Sbjct: 272 AEEEEEDEYESEDCPHETK----SPSGFFNGL----PLAAAS 305

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436142|ref|XP_004135853.1| PREDICTED: uncharacterized protein LOC101208051 [Cucumis sativus] gi|449491043|ref|XP_004158782.1| PREDICTED: uncharacterized LOC101208051 [Cucumis sativus]

 Score =  251 bits (641), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 172/345 (49%), Positives = 218/345 (63%), Gaps = 40/345 (11%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHH-----HQ 55
           MLLR++STPIL+SWL Q+    SS S SN     ++  LQRT+S+SL    H        
Sbjct: 1   MLLRTNSTPILNSWLHQFK---SSPSESN-----QIHHLQRTKSISLISSFHLPPPSVST 52

Query: 56  SRKHKLLTTIYQ------RKEIRDSQMNKKGNIRALKPPPASHSHDHH---QAKESSSRI 106
              +++   + +      RK+I    + K   ++           D H    +  SSS I
Sbjct: 53  ESSNRVTQNLLESDSTDPRKKI---PITKSSKVKVKSRENGVSVRDQHLKPTSDSSSSSI 109

Query: 107 QRLFSSSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDA 166
             +F +SGLG K    +  DEK            +QT+V+GGG+GN+GG++C G G G  
Sbjct: 110 HGVFLNSGLGLKFPNDEVCDEKRD-------ACILQTLVVGGGMGNDGGRVCGGSGRGSD 162

Query: 167 GGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK 226
           GGGGG +G SG NN+     HGS+STDAYY+KMIEANP NALLLGNYA+FLKEV GDF+K
Sbjct: 163 GGGGGDNGRSGFNNH-----HGSNSTDAYYQKMIEANPNNALLLGNYAKFLKEVHGDFSK 217

Query: 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286
           AEE CGRAILA+P+D ++LSLYADLIW   +DA RAE+YFDQAVKSAPDDCY+LASYA+F
Sbjct: 218 AEEFCGRAILADPNDASVLSLYADLIWHTQRDARRAETYFDQAVKSAPDDCYLLASYARF 277

Query: 287 LWDAGDDEEEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
           LWD   D E   D+ E Q++T+ SH   P F HGA HHSPL A S
Sbjct: 278 LWDTDVDNE---DDTEDQYETEESHPLHPGFSHGAPHHSPLAATS 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486453|gb|ABK95066.1| unknown [Populus trichocarpa]

 Score =  237 bits (604), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 158/344 (45%), Positives = 198/344 (57%), Gaps = 54/344 (15%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPE-LQVLQRTRSVSLS---------DD 50
           MLLRSSSTP L+SW+P +SK+ S         EPE +  +Q+TR +SL+           
Sbjct: 1   MLLRSSSTPFLNSWIPPHSKEPSP--------EPESVHQIQKTRPISLTASSSSPFSSIS 52

Query: 51  HHHHQSRKHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLF 110
              H S K   +T  +   ++RD  + K+                    K S+  +  + 
Sbjct: 53  SQDHDSIKR--MTRAFSEADLRDLSVPKR--------------------KPSNGILNGIP 90

Query: 111 SSSGLGEKLLKKDDDDEKEGCEV-EDGGGS--YVQTMVMGGGLGNNGGKICDGRGGGDAG 167
               + EK+   +     EGCE  E G G    ++ +V GGG    G K C GRG  D G
Sbjct: 91  VDEEVEEKVSFWEGGLFFEGCEAGEKGEGDNGVLEVLVTGGGGDGGGRKFCGGRGRSDFG 150

Query: 168 GGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKA 227
             GG    SGS  +    N G  +TDAYY+ MIEANPGN L L NYARFLKEVR DF KA
Sbjct: 151 DDGG----SGSRES----NEGIETTDAYYQTMIEANPGNPLFLRNYARFLKEVRLDFVKA 202

Query: 228 EELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287
           EE CGRAILANP+D ++LS+YADLIWQ+HKDASRAESYF +AVK+APDDCYV+ASYA+FL
Sbjct: 203 EEYCGRAILANPNDADVLSMYADLIWQSHKDASRAESYFLRAVKAAPDDCYVMASYARFL 262

Query: 288 WDAGDDEEEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
           WDA   EEEE +  E +   + S  SPP FFHG+    P  AAS
Sbjct: 263 WDA---EEEEGEEGEREQNENMSKMSPPTFFHGSKPPLPPLAAS 303

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442971|ref|XP_002267739.1| PREDICTED: uncharacterized protein LOC100243938 [Vitis vinifera]

 Score =  226 bits (577), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 157/340 (46%), Positives = 197/340 (57%), Gaps = 43/340 (12%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQV---LQRTRSVSLSDDHHHHQSR 57
           MLLRSSSTPIL+SW+  Y KD+S          PE  +   + +T+S+SLS      QS 
Sbjct: 1   MLLRSSSTPILNSWIQPYGKDTS----------PETDLVHQIPKTKSLSLSASF---QSP 47

Query: 58  KHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAK------ESSSRIQRLFS 111
            H   +       ++  +M +  +   L+ PP  ++H+   +       E    I+ L S
Sbjct: 48  PHTAPSITTSAGSLQ--KMARALSETDLRDPPKRNTHEKWFSPPTVDEGEEQDSIRSLLS 105

Query: 112 SSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGG 171
           SSGLGE           E C VEDGG + ++ M  G      G     G G G +GG G 
Sbjct: 106 SSGLGES----------ERCGVEDGGPATLE-MGGGIRGNGGGIFGGGGYGKGSSGGDGD 154

Query: 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELC 231
           G G     +NY     G  STD YY+KMIEANP NAL LGNYA+FLKEVRGD  KAEE C
Sbjct: 155 GHGGGAYESNY-----GHESTDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYC 209

Query: 232 GRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291
           GRAIL NPSDGN+LS YADLIW   KDA RAE+YF+QAV+ APDDCYVLASYA FLW+  
Sbjct: 210 GRAILVNPSDGNVLSFYADLIWNNQKDAQRAETYFNQAVRVAPDDCYVLASYAHFLWETE 269

Query: 292 DDEEEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
           +++EE+   E +   T ++H   P+FF G   HSPL AAS
Sbjct: 270 EEDEEDSRYETA---TANTHGFSPSFFPGGPFHSPLAAAS 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144206|ref|XP_002325219.1| predicted protein [Populus trichocarpa] gi|222866653|gb|EEF03784.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (571), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 154/344 (44%), Positives = 195/344 (56%), Gaps = 50/344 (14%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPE-LQVLQRTRSVSLS----------D 49
           MLLRSSSTPIL+SW+P +SK+ S         EPE L  +Q TRS+SL+           
Sbjct: 1   MLLRSSSTPILNSWIPPHSKEPSP--------EPESLHQIQITRSISLAASSSGPFSSIS 52

Query: 50  DHHHHQSRKHKLLTTIYQRKEIRDSQMNK-KGNIRALKPPPASHSHDHHQAKESSSRIQ- 107
              H  + + K+    + + ++RD  + K K + + L         D    K+ S     
Sbjct: 53  SQGHDSNERVKI---AFSKNDLRDFSVPKRKPSNKILNGITVDQEVDEEVEKKVSFWESG 109

Query: 108 RLFSSSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAG 167
            LF   G+GEK          EG    D G        + G L   GG    GR     G
Sbjct: 110 LLFEGFGVGEK---------GEG----DNG--------VLGVLVTGGGSDGGGRKFCGGG 148

Query: 168 GGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKA 227
           GG G        + +  +N G  +TD YY+ MIEANPGN L L NYARFLKE+R DF KA
Sbjct: 149 GGFGSDFGDDGGSRFRESNEGIETTDVYYQTMIEANPGNPLFLRNYARFLKEIRLDFVKA 208

Query: 228 EELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287
           EE CGRAILANP+D ++LS+YADLIWQ HK+ASRAESYFD+AVK+APDDCYV+ASYA+FL
Sbjct: 209 EEYCGRAILANPNDADVLSMYADLIWQGHKNASRAESYFDRAVKAAPDDCYVMASYARFL 268

Query: 288 WDAGDDEEEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
           WDA ++EE E+D  E     + S  SPP FFHG+    PL A+S
Sbjct: 269 WDAEEEEEGERDQRE-----NMSKLSPPTFFHGSRPLPPLAASS 307

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743453|emb|CBI36320.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (570), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 155/334 (46%), Positives = 194/334 (58%), Gaps = 48/334 (14%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQV---LQRTRSVSLSDDHHHHQSR 57
           MLLRSSSTPIL+SW+  Y KD+S          PE  +   + +T+S+SLS      QS 
Sbjct: 1   MLLRSSSTPILNSWIQPYGKDTS----------PETDLVHQIPKTKSLSLSASF---QSP 47

Query: 58  KHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGE 117
            H   +       ++  +M +  +   L+ PP  ++H+           + L SSSGLGE
Sbjct: 48  PHTAPSITTSAGSLQ--KMARALSETDLRDPPKRNTHE-----------KCLLSSSGLGE 94

Query: 118 KLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSG 177
                      E C VEDGG + ++ M  G      G     G G G +GG G G G   
Sbjct: 95  S----------ERCGVEDGGPATLE-MGGGIRGNGGGIFGGGGYGKGSSGGDGDGHGGGA 143

Query: 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237
             +NY     G  STD YY+KMIEANP NAL LGNYA+FLKEVRGD  KAEE CGRAIL 
Sbjct: 144 YESNY-----GHESTDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYCGRAILV 198

Query: 238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE 297
           NPSDGN+LS YADLIW   KDA RAE+YF+QAV+ APDDCYVLASYA FLW+  +++EE+
Sbjct: 199 NPSDGNVLSFYADLIWNNQKDAQRAETYFNQAVRVAPDDCYVLASYAHFLWETEEEDEED 258

Query: 298 QDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
              E +   T ++H   P+FF G   HSPL AAS
Sbjct: 259 SRYETA---TANTHGFSPSFFPGGPFHSPLAAAS 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356519331|ref|XP_003528326.1| PREDICTED: uncharacterized protein LOC100784802 [Glycine max]

 Score =  221 bits (562), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 154/337 (45%), Positives = 198/337 (58%), Gaps = 38/337 (11%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPE--LQVLQRTRSVSLSDDHHHHQSRK 58
           MLLRSSS PIL S L  YSK+  S        EPE  L + +   ++SLS          
Sbjct: 1   MLLRSSSAPILTSLL-FYSKEFPS--------EPEHILHLPKTASALSLS-----QSLVD 46

Query: 59  HKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSR--IQRLFSSSGLG 116
             L  +   R++ R    N   N +++K        D  Q     ++  I  LFSS  L 
Sbjct: 47  IDLKNSSSPRRKNRVPLSNVPNNQQSIKINERYEGKDPQQKTFMKAKPSILELFSSFDLD 106

Query: 117 EKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKIC---DGRGGGDAGGGGGGS 173
           + +L    D E+ G   +D   S++QT VMG G+G++GG IC   +G G G  GG G   
Sbjct: 107 KGVL----DHEECGAGKKD---SWLQTSVMGAGMGSDGGWICGGCNGSGRGSDGGHGRRW 159

Query: 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 233
           GF         N+HG   TDAYY+ MIEANP +ALLLGNYA+FLKEV  D+ KA+E   R
Sbjct: 160 GFD------EGNDHGRDRTDAYYQNMIEANPSDALLLGNYAKFLKEVCEDYPKAKEYLER 213

Query: 234 AILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD 293
           AILANP DG+ILSLYA+LIWQ  KDA +AE YFDQA+KSAPDD YVLASYA FLWD    
Sbjct: 214 AILANPDDGHILSLYAELIWQTEKDADQAEGYFDQAIKSAPDDSYVLASYANFLWDV--- 270

Query: 294 EEEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAA 330
            EE+ ++++ ++++DHSHT P + FHG +HH   T A
Sbjct: 271 -EEDDEDKDCKNKSDHSHTYPTDLFHGTNHHLHSTVA 306

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147823174|emb|CAN73025.1| hypothetical protein VITISV_012768 [Vitis vinifera]

 Score =  221 bits (562), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 151/337 (44%), Positives = 189/337 (56%), Gaps = 37/337 (10%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHK 60
           MLLRSSSTPIL+SW+  Y KD+S          PE  ++ +              S  H 
Sbjct: 1   MLLRSSSTPILNSWIQPYGKDTS----------PETDLVHQIPKTKSLSLSASFXSPPHT 50

Query: 61  LLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAK------ESSSRIQRLFSSSG 114
             +       ++  +M +  +   L+ PP  ++H+   +       E    I+ L SSSG
Sbjct: 51  APSITTSAGSLQ--KMARALSETDLRDPPKRNTHEKWFSPPTVDEGEEQDSIRSLLSSSG 108

Query: 115 LGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSG 174
           LGE           E C VEDGG + ++ M  G      G     G G G +GG G G G
Sbjct: 109 LGES----------ERCGVEDGGPATLE-MGGGIRGNGGGIFGGGGYGKGSSGGDGDGHG 157

Query: 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234
                +NY     G  STD YY+KMIEANP NAL LGNYA+FLKEVRGD  KAEE CGRA
Sbjct: 158 GGAYESNY-----GHESTDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYCGRA 212

Query: 235 ILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDE 294
           IL NPSDGN+LS YADLIW   KDA RAE+YF+QAV+ APDDCYVLASYA FLW+  +++
Sbjct: 213 ILVNPSDGNVLSFYADLIWNNQKDAQRAETYFNQAVRVAPDDCYVLASYAHFLWETEEED 272

Query: 295 EEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
           EE+   E +   T ++H   P+FF G   HSPL AAS
Sbjct: 273 EEDSRYETA---TANTHGFSPSFFPGGPFHSPLAAAS 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445531|ref|XP_002285275.1| PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera] gi|297738966|emb|CBI28211.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (534), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 148/338 (43%), Positives = 198/338 (58%), Gaps = 58/338 (17%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPEL--QVLQRTRSVSLSDDHHHHQSRK 58
           MLLRSSSTPIL+SW P          S  SS+EPE+  Q+L  +RS+SL+          
Sbjct: 1   MLLRSSSTPILNSWPPN---------SKESSSEPEMVPQILL-SRSISLTTSSLSSVEGS 50

Query: 59  HKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGEK 118
            K ++      ++R+  + K+  I                    +  + RL S       
Sbjct: 51  SKKMSRALSETDLRELSLPKRKPI--------------------TKTVNRLSS------- 83

Query: 119 LLKKDDDDEKEGCEVEDGGGSYVQTMVMGG---GLGNNGGKICDGR--GGGDAGGGGGGS 173
            L  D+ +E++ C +        +T   GG   G+G++ G  C+G    GG  GGGG   
Sbjct: 84  -LPVDEREEEDSCPIS-------RTASYGGLWWGVGSDAG--CEGVCVEGGSEGGGGSDG 133

Query: 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 233
           G++   + Y ++N+G+ + ++YY  MIEANPGNALLLGNYARFLKEVRGD+ KAEE CGR
Sbjct: 134 GYAHGKSGYGDSNNGNGNMESYYRTMIEANPGNALLLGNYARFLKEVRGDYIKAEEYCGR 193

Query: 234 AILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD 293
           AILANP+DGNILSL+ADLIWQ HKD+ RAESYFDQAVK++PDDC+VLASYA FLW+  ++
Sbjct: 194 AILANPNDGNILSLFADLIWQVHKDSDRAESYFDQAVKASPDDCFVLASYAHFLWEEEEE 253

Query: 294 EEEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
           EEE++  E    +   SH      F GAS   P  AA+
Sbjct: 254 EEEKERVEGEYMKETSSHP----VFRGASPSLPPLAAA 287

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555346|ref|XP_003545994.1| PREDICTED: uncharacterized protein LOC100801597 [Glycine max]

 Score =  210 bits (534), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 138/336 (41%), Positives = 175/336 (52%), Gaps = 67/336 (19%)

Query: 1   MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSD---DHHHHQSR 57
           MLLR+S+ PI  SWLP          SS S     L +   T   ++ D   D H+H   
Sbjct: 1   MLLRTSTVPIPSSWLPH---------SSQSQPLLHLPITLSTPIKNMLDTDTDPHNHTPP 51

Query: 58  KHKLLTTIYQRKEI---RDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSG 114
           K +  T++ +   +   R  +M +   +   K          ++ K +   +++LFSSSG
Sbjct: 52  KPEKKTSMSRSNVLKNHRSIKMKESDQVEEAK-------QKIYKKKLTPPSVRKLFSSSG 104

Query: 115 LGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSG 174
           L          D  EG        S +QT+V                       GGG   
Sbjct: 105 L----------DMHEG--------SRLQTLV----------------------MGGGMGS 124

Query: 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234
             G        +HG   TDAYY+ MI+ANP NALLLGNYA+FLKEVRGD+ KAEE   RA
Sbjct: 125 GGGRICGGGRGSHGRDGTDAYYQNMIQANPNNALLLGNYAKFLKEVRGDYPKAEEYLERA 184

Query: 235 ILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDE 294
           ILANP D N+LSLYADLIWQ  K+A RAE YFDQAVK+APDDCYVLASYAKFLWD  +DE
Sbjct: 185 ILANPGDANVLSLYADLIWQTEKNADRAEGYFDQAVKTAPDDCYVLASYAKFLWDVEEDE 244

Query: 295 EEEQDNEESQHQTDHSHTSPPNFFHGASHHSPLTAA 330
                +++ QH+TDH H  PP+ F        +TA 
Sbjct: 245 -----DKDCQHKTDHGHAYPPDLFQETEDRPHVTAV 275

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2016229	305	AT1G80130 [Arabidopsis thalian	0.422	0.459	0.531	9.7e-46
TAIR|locus:2149314	290	AT5G20190 "AT5G20190" [Arabido	0.404	0.462	0.581	4.7e-44
TAIR|locus:2127781	238	AT4G32340 "AT4G32340" [Arabido	0.296	0.411	0.656	1.3e-31
TAIR|locus:2141030	274	AT4G17940 "AT4G17940" [Arabido	0.290	0.350	0.562	1.5e-26
TAIR|locus:2197768	310	TPR4 "tetratricopeptide repeat	0.283	0.303	0.473	4e-19
TAIR|locus:2060669	536	AT2G29670 [Arabidopsis thalian	0.302	0.186	0.4	7.9e-15
TAIR|locus:2025067	552	AT1G07280 "AT1G07280" [Arabido	0.302	0.181	0.39	8.4e-15
TAIR|locus:2075616	515	AT3G47080 [Arabidopsis thalian	0.302	0.194	0.36	9.6e-12

TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)]

 Score = 398 (145.2 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 75/141 (53%), Positives = 95/141 (67%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             TD YY +MI++NPGN+LL GNYA+FLKEV+GD  KAEE C RAIL N +DGN+LSLYADL
Sbjct:   165 TDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADL 224

Query:   252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGXXXXXXXXXXXSQHQTDHS- 310
             I   H+D  RA SY+ QAVK +P+DCYV ASYA+FLWD              ++ +D + 
Sbjct:   225 ILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEALGEEEENLSDETG 284

Query:   311 HTSPPNFFHGASHHSPLTAAS 331
             H  P   F     H+ +TA+S
Sbjct:   285 HVPPTTMFRDFPQHTSITASS 305

GO:0016020 "membrane" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP

TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
 Identities = 82/141 (58%), Positives = 104/141 (73%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             TD +Y KMIEANPGN + L NYA+FLKEVR D+ KAEE CGRAIL +P+DGN+L++YA+L
Sbjct:   156 TDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAEL 215

Query:   252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGXXXXXXXXXXXSQHQTDHSH 311
             +W+ HKD+SRAE+YF+QAV +AP+DCYV ASYA+FLWDA             +H+ +  H
Sbjct:   216 VWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDA---EEEEEEEKEERHEEELEH 272

Query:   312 -TSPPNFFHGASHHSPLTAAS 331
              TS  NFF G S   P+TA S
Sbjct:   273 QTSRMNFFTGPS---PITAMS 290

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
 Identities = 65/99 (65%), Positives = 79/99 (79%)

Query:   193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADL 251
             D YYE+MI+  PG+ LLL NYARFLKEV+GD  KAEE C RA+L+    DG +LS+Y DL
Sbjct:   111 DGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDL 170

Query:   252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290
             IW+ H D  RA+SY+DQAV+S+PDDC VLASYA+FLWDA
Sbjct:   171 IWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDA 209

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 54/96 (56%), Positives = 69/96 (71%)

Query:   195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
             YY +M+ +NP N+LLL NY +FL EV  D   AEE  GRAIL NP DG  LS+Y  LIW+
Sbjct:   153 YYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWE 212

Query:   255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290
               +D  RA+ YFDQAV ++P+DC VL SYA+F+W+A
Sbjct:   213 TKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMWEA 248

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 45/95 (47%), Positives = 66/95 (69%)

Query:   195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
             YY+ M+E  P + LLL NYA+FL E +GD + AEE   +  +  PSDG  L+ Y  L+ +
Sbjct:   124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 182

Query:   255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289
              H+D ++A SYF++AV+++PDD  VLA+YA FLW+
Sbjct:   183 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWE 217

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 7.9e-15, P = 7.9e-15
 Identities = 40/100 (40%), Positives = 54/100 (54%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             T+  Y+  +   P N LLL NYA+FL  V  D  +AEE   RA+   P D    S YA  
Sbjct:   420 TELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATF 479

Query:   252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291
             +W+A  D   AE  F +A+ + P + Y  A+YA FLW+ G
Sbjct:   480 LWRARDDLWAAEETFLEAIDADPTNSYYAANYANFLWNTG 519

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 8.4e-15, P = 8.4e-15
 Identities = 39/100 (39%), Positives = 58/100 (58%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             T+  Y+  +   PGN LLL NYA+FL  +  D+ +AE+   RA  A P+D   L+ YA  
Sbjct:   435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494

Query:   252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291
             +W+A  D  RAE  + +A+ + P +    A+YA FLW+ G
Sbjct:   495 LWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWNTG 534

GO:0008150 "biological_process" evidence=ND

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 9.6e-12, Sum P(2) = 9.6e-12
 Identities = 36/100 (36%), Positives = 52/100 (52%)

Query:   192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
             T+  Y+  +   P N LLL NYA+FL  V  D  +AE    +AI +   D    S YA  
Sbjct:   400 TELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIF 459

Query:   252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291
             +W+   D   AE  F +A+ + P + +  A+YA FLW+ G
Sbjct:   460 LWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLWNTG 499

GO:0005634 "nucleus" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	1e-06
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	3e-05
pfam13414	69	pfam13414, TPR_11, TPR repeat	5e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	8e-05
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	1e-04
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	2e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-04
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	6e-04
PHA00370	297	PHA00370, III, attachment protein	0.001
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.003
pfam05268	261	pfam05268, GP38, Phage tail fibre adhesin Gp38	0.004

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 50.5 bits (121), Expect = 3e-08
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
           YYEK +E +P NA    N A    +  G + +A E   +A+  +P +           ++
Sbjct: 22  YYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80

Query: 255 AHKDASRAESYFDQAVKSAPD 275
             K    A   +++A++  P+
Sbjct: 81  LGKYE-EALEAYEKALELDPN 100

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265
           NA  L N    L +  GD+ +A E   +A+  +P +       A    +  KD   A   
Sbjct: 2   NAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 266 FDQAVKSAP 274
            ++A++  P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 3/112 (2%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL-- 251
              EK +  +P   L     A       GD+ +A EL  +A+  +P    +      L  
Sbjct: 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA 175

Query: 252 IWQAHKDASRAESYFDQAVKSAPDDCY-VLASYAKFLWDAGDDEEEEQDNEE 302
           + +A      A    ++A+K  PDD    L +        G  EE  +  E+
Sbjct: 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEK 227

Length = 291

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.0 bits (99), Expect = 3e-05
 Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 1/75 (1%)

Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280
            GD+ +A E   +A+  +P + +     A   +        A   +++A++  PD+    
Sbjct: 13  LGDYDEALEYYEKALELDPDNADAYYNLA-AAYYKLGKYEEALEDYEKALELDPDNAKAY 71

Query: 281 ASYAKFLWDAGDDEE 295
            +     +  G  EE
Sbjct: 72  YNLGLAYYKLGKYEE 86

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 14/46 (30%), Positives = 23/46 (50%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239
             YEK +E +P NA    N A    ++  D+ +A E   +A+  +P
Sbjct: 24  EAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 40.0 bits (94), Expect = 8e-05
 Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
            GD+ +A      A+   P     L L  + + +     + A +    A+ + PDD
Sbjct: 10  AGDYDEALAALEAALARYPLAAEALLLLGEALLRQ-GRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 6/106 (5%)

Query: 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249
              D  Y K +   P N  +L NY  FL   +G   +A +   RA+   P+ G       
Sbjct: 86  DLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFERALAD-PAYGEPSDTLE 143

Query: 250 DLIW---QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD 292
           +L     +A +   +AE Y  +A++  P     L   A+  + AGD
Sbjct: 144 NLGLCALKAGQFD-QAEEYLKRALELDPQFPPALLELARLHYKAGD 188

Length = 250

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 3/103 (2%)

Query: 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252
             +Y+ +++  P NA++L N A    E      +A E   RA+   P+   IL     L+
Sbjct: 790 IKHYQTVVKKAPDNAVVLNNLAWLYLE--LKDPRALEYAERALKLAPNIPAILDTLGWLL 847

Query: 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEE 295
            +   +A RA     +AV  AP+   +    A  L   G   E
Sbjct: 848 VEK-GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAI----LANPSDGNILSLYADL--IWQAH 256
           +P  A  L N A  L+   GD+ +A EL  +A+                  +L  ++ A 
Sbjct: 1   HPDLAAALNNLALVLRR-LGDYDEALELLEKALELARELGEDHPETARALNNLARLYLAL 59

Query: 257 KDASRAESYFDQAVKSAPD 275
            D   A  Y ++A+     
Sbjct: 60  GDYDEALEYLEKALALREA 78

Length = 78

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 40.5 bits (95), Expect = 6e-04
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 1/96 (1%)

Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280
           +GD+A+A++   +A+  +PS      + A   +Q   +   A+  + +A+  AP++  VL
Sbjct: 48  QGDYAQAKKNLEKALEHDPSYYLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNGDVL 106

Query: 281 ASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSPPN 316
            +Y  FL   G  EE  Q  E +     +   S   
Sbjct: 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL 142

Length = 250

>gnl|CDD|164795 PHA00370, III, attachment protein

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 2/73 (2%)

Query: 135 DGGGSYVQTMVMGG--GLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSST 192
           DGGG+       GG  G GN GG    G  GG  GGG  G G  G +   S    G  + 
Sbjct: 85  DGGGTGEGGSDTGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKSLTKEGVGAG 144

Query: 193 DAYYEKMIEANPG 205
           D  Y KM  AN  
Sbjct: 145 DFDYPKMANANKD 157

Length = 297

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 194 AYYEKMIE--ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
              EK +E    P  A  L N    L+   G + +A EL  +A+  +P      +L A  
Sbjct: 80  ELLEKALELELLPNLAEALLNLGLLLEA-LGKYEEALELLEKALALDPDPDLAEALLALG 138

Query: 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE 302
                 D   A   +++A++  P+    L   A+ L   G   E     EE
Sbjct: 139 ALYELGDYEEALELYEKALELDPE----LNELAEALLALGALLEALGRYEE 185

Length = 291

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 39.3 bits (92), Expect = 0.003
 Identities = 26/107 (24%), Positives = 50/107 (46%), Gaps = 2/107 (1%)

Query: 196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255
           YE+ +  +P +       A+ L      F +A  L    + A+P + + L L  DL+  +
Sbjct: 148 YEQALAIDPRSLYAKLGLAQ-LALAENRFDEARALIDEVLTADPGNVDALLLKGDLL-LS 205

Query: 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE 302
             +   A + + +A+   P++  VL + A  L +AG+ EE E+  + 
Sbjct: 206 LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|147458 pfam05268, GP38, Phage tail fibre adhesin Gp38

 Score = 37.9 bits (88), Expect = 0.004
 Identities = 27/82 (32%), Positives = 32/82 (39%), Gaps = 22/82 (26%)

Query: 137 GGSYVQTMVMGGGLGNNGGKICDGRGGG-------------DAGGGGG---------GSG 174
           GG  +Q  + G    NNGG I  G GGG               GGGGG         GS 
Sbjct: 131 GGHCIQNDIGGRLRINNGGAIAGGGGGGGGASLKNSWRGNGVCGGGGGRPFGAGGKSGSH 190

Query: 175 FSGSNNNYSNNNHGSSSTDAYY 196
            SG N + +    GS +  AY 
Sbjct: 191 MSGGNASLTAPGGGSGTGSAYG 212

This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, gp57, catalyzes the organisation of gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition. Length = 261

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
PRK15359	144	type III secretion system chaperone protein SscB;	99.59
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.51
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.5
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.49
PRK15359	144	type III secretion system chaperone protein SscB;	99.48
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.48
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.48
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.47
PRK11189	296	lipoprotein NlpI; Provisional	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.43
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.43
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.42
PRK12370	553	invasion protein regulator; Provisional	99.42
PRK12370	553	invasion protein regulator; Provisional	99.41
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.4
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.4
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.38
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.37
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.37
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.36
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.35
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.35
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.35
KOG0553	304	consensus TPR repeat-containing protein [General f	99.35
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.32
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.31
KOG1126	638	consensus DNA-binding cell division cycle control	99.27
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.26
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.25
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.25
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.24
PRK11189	296	lipoprotein NlpI; Provisional	99.24
KOG1126	638	consensus DNA-binding cell division cycle control	99.24
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.23
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.21
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.21
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.21
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.21
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.21
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.19
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.19
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.16
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.16
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.15
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.14
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.08
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.07
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.05
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.04
PLN02789	320	farnesyltranstransferase	99.04
COG4783	484	Putative Zn-dependent protease, contains TPR repea	99.03
KOG1125	579	consensus TPR repeat-containing protein [General f	99.03
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.0
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.0
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.99
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.99
KOG2076	895	consensus RNA polymerase III transcription factor	98.99
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.96
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.95
KOG1125	579	consensus TPR repeat-containing protein [General f	98.93
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.92
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.92
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.91
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.9
PLN02789	320	farnesyltranstransferase	98.9
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.89
PRK14574	822	hmsH outer membrane protein; Provisional	98.88
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.87
PRK11906	458	transcriptional regulator; Provisional	98.84
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.84
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.84
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.82
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.82
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.82
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.81
PRK10803	263	tol-pal system protein YbgF; Provisional	98.79
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.79
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.76
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.75
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.75
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.75
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.72
PRK14574	822	hmsH outer membrane protein; Provisional	98.72
PRK15331	165	chaperone protein SicA; Provisional	98.71
PF13371	73	TPR_9: Tetratricopeptide repeat	98.7
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.69
KOG1129	478	consensus TPR repeat-containing protein [General f	98.69
PF13371	73	TPR_9: Tetratricopeptide repeat	98.69
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.66
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.66
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.64
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.63
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.62
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.62
KOG0553	304	consensus TPR repeat-containing protein [General f	98.61
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.59
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.57
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.56
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.56
PRK15331	165	chaperone protein SicA; Provisional	98.55
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.54
KOG2003	840	consensus TPR repeat-containing protein [General f	98.54
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.54
KOG2003	840	consensus TPR repeat-containing protein [General f	98.53
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.49
PF12688	120	TPR_5: Tetratrico peptide repeat	98.49
PRK11906	458	transcriptional regulator; Provisional	98.48
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.48
PRK10803	263	tol-pal system protein YbgF; Provisional	98.47
PF12688	120	TPR_5: Tetratrico peptide repeat	98.47
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.45
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.43
KOG2076	895	consensus RNA polymerase III transcription factor	98.42
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.38
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.34
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.34
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.34
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.34
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.33
KOG4648	536	consensus Uncharacterized conserved protein, conta	98.32
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.31
KOG1129	478	consensus TPR repeat-containing protein [General f	98.28
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.28
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.28
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.27
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.26
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.25
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.24
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.22
KOG4234	271	consensus TPR repeat-containing protein [General f	98.2
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.16
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.14
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.13
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.13
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.13
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	98.12
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.11
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.11
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.09
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.09
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.07
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.07
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.05
PF13512	142	TPR_18: Tetratricopeptide repeat	98.03
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.02
COG0457	291	NrfG FOG: TPR repeat [General function prediction	98.01
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.96
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.96
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.96
PF13428	44	TPR_14: Tetratricopeptide repeat	97.94
PF13428	44	TPR_14: Tetratricopeptide repeat	97.93
PF13431	34	TPR_17: Tetratricopeptide repeat	97.92
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.91
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	97.91
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.87
PLN03077	857	Protein ECB2; Provisional	97.86
PLN03218	1060	maturation of RBCL 1; Provisional	97.84
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.82
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.82
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.81
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.79
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.78
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	97.77
KOG4555	175	consensus TPR repeat-containing protein [Function	97.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.76
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.76
PF13431	34	TPR_17: Tetratricopeptide repeat	97.75
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	97.71
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.71
PLN03077	857	Protein ECB2; Provisional	97.68
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	97.67
PLN03218	1060	maturation of RBCL 1; Provisional	97.67
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.65
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.63
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	97.59
KOG4555	175	consensus TPR repeat-containing protein [Function	97.57
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.57
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.55
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.55
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.54
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.52
KOG2610	491	consensus Uncharacterized conserved protein [Funct	97.43
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.43
PRK04841	903	transcriptional regulator MalT; Provisional	97.41
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.38
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.37
PRK04841	903	transcriptional regulator MalT; Provisional	97.35
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.34
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.32
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	97.25
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.22
PF13512	142	TPR_18: Tetratricopeptide repeat	97.2
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.18
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.11
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.11
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	97.1
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.08
KOG1915	677	consensus Cell cycle control protein (crooked neck	97.07
KOG2047	835	consensus mRNA splicing factor [RNA processing and	97.07
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.06
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.05
KOG4234	271	consensus TPR repeat-containing protein [General f	97.04
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	96.99
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.98
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	96.94
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.89
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.89
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.81
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.8
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.76
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.76
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.75
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.74
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.74
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.69
KOG4340	459	consensus Uncharacterized conserved protein [Funct	96.68
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	96.68
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.66
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.58
KOG3785	557	consensus Uncharacterized conserved protein [Funct	96.57
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.55
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.55
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.55
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.49
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	96.45
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.39
KOG2471	696	consensus TPR repeat-containing protein [General f	96.38
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.36
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	96.35
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.34
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.33
COG5191	435	Uncharacterized conserved protein, contains HAT (H	96.31
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	96.26
KOG1585	308	consensus Protein required for fusion of vesicles	96.26
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.25
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.24
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	96.02
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	96.0
PRK10941	269	hypothetical protein; Provisional	95.87
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.86
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	95.85
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.64
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.56
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	95.52
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	95.49
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.48
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	95.45
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	95.4
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	95.37
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.36
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.32
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.25
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	95.23
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.22
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	95.19
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	95.18
COG4105	254	ComL DNA uptake lipoprotein [General function pred	95.15
PRK10941	269	hypothetical protein; Provisional	95.14
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.05
KOG1310	758	consensus WD40 repeat protein [General function pr	95.02
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.02
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.88
KOG2471	696	consensus TPR repeat-containing protein [General f	94.86
KOG1586	288	consensus Protein required for fusion of vesicles	94.8
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.77
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.75
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.69
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	94.61
KOG4507	886	consensus Uncharacterized conserved protein, conta	94.56
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.54
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	94.47
COG3118	304	Thioredoxin domain-containing protein [Posttransla	94.41
KOG3364	149	consensus Membrane protein involved in organellar	94.34
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.2
KOG1586	288	consensus Protein required for fusion of vesicles	94.2
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	94.02
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.94
COG4976	287	Predicted methyltransferase (contains TPR repeat)	93.84
KOG1550	552	consensus Extracellular protein SEL-1 and related	93.67
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.59
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.5
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.36
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.14
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.99
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.96
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.95
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	92.87
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.75
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.53
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.52
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.36
KOG1585	308	consensus Protein required for fusion of vesicles	92.32
KOG1258	577	consensus mRNA processing protein [RNA processing	92.22
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	92.15
KOG2300	629	consensus Uncharacterized conserved protein [Funct	92.13
KOG1258	577	consensus mRNA processing protein [RNA processing	91.88
KOG1310	758	consensus WD40 repeat protein [General function pr	91.77
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	91.51
smart00386	33	HAT HAT (Half-A-TPR) repeats. Present in several R	90.95
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.89
KOG4814	872	consensus Uncharacterized conserved protein [Funct	90.54
COG2912	269	Uncharacterized conserved protein [Function unknow	90.39
KOG3364	149	consensus Membrane protein involved in organellar	89.99
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	89.95
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.71
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.97
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	88.95
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	88.91
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	88.86
KOG0529	421	consensus Protein geranylgeranyltransferase type I	88.78
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.47
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	88.14
KOG2422	665	consensus Uncharacterized conserved protein [Funct	87.91
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.87
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	87.87
COG3629	280	DnrI DNA-binding transcriptional activator of the	87.59
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	87.18
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.88
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	85.51
COG3898	531	Uncharacterized membrane-bound protein [Function u	85.41
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	85.33
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	84.44
KOG0529	421	consensus Protein geranylgeranyltransferase type I	84.0
COG1747	711	Uncharacterized N-terminal domain of the transcrip	83.9
KOG4814	872	consensus Uncharacterized conserved protein [Funct	83.83
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	83.56
COG2912	269	Uncharacterized conserved protein [Function unknow	83.18
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	83.02
KOG2300	629	consensus Uncharacterized conserved protein [Funct	81.84
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	81.65
PF11846	193	DUF3366: Domain of unknown function (DUF3366); Int	81.29
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	80.39

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.59  E-value=2.7e-14  Score=122.89  Aligned_cols=113  Identities=12%  Similarity=-0.012  Sum_probs=99.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..+++..+...|++++|..+|++++..+|.++.++.++|.++.. .|++++|+.+|++|++++|+++.++++++.++.. 
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~-  104 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM-  104 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-
Confidence            45678888899999999999999999999999999999988665 8999999999999999999999999888888887 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      .|++++|+.+|++|++++|+++..+.+.+.+...+
T Consensus       105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359        105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999888888877654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.51  E-value=2.3e-13  Score=126.26  Aligned_cols=123  Identities=18%  Similarity=0.215  Sum_probs=114.1

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ...+|.-|...|++..|+.-+++||+.+|++..++..+|.++. ..|+.+.|.+.|++|+.++|++++|+++|+++++. 
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq-~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQ-KLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-
Confidence            3457778999999999999999999999999999999998854 59999999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP---~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +|++++|..+|++|++. |   ....++.|++.|..+.|++..+++.++
T Consensus       116 qg~~~eA~q~F~~Al~~-P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~  163 (250)
T COG3063         116 QGRPEEAMQQFERALAD-PAYGEPSDTLENLGLCALKAGQFDQAEEYLK  163 (250)
T ss_pred             CCChHHHHHHHHHHHhC-CCCCCcchhhhhhHHHHhhcCCchhHHHHHH
Confidence            99999999999999986 4   667899999999999999999998887

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.50  E-value=3.7e-13  Score=122.10  Aligned_cols=115  Identities=13%  Similarity=0.144  Sum_probs=107.2

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 020094          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD--ASRAE  263 (331)
Q Consensus       186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd--~deA~  263 (331)
                      .++.++++..|+++++.+|+++..|..+|.++.. .+++++|+..|++|++++|+++.++..+|.+++...|+  +++|+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~-~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~  130 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLW-RNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR  130 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence            3567999999999999999999999999998655 99999999999999999999999999999987554777  59999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          264 SYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       264 ~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..++++++++|++..++..+|..+...|++++|...++
T Consensus       131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~  168 (198)
T PRK10370        131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ  168 (198)
T ss_pred             HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999999999998887

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.49  E-value=9.3e-14  Score=142.78  Aligned_cols=129  Identities=13%  Similarity=0.150  Sum_probs=99.1

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      .+.-..+|+|-+|+.+|..+-|+.+|+++|++.|+.++++.|+|.+|.+ .|+..+|+.+|.+|+.+.|+.++++++++.
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd-~G~V~ea~~cYnkaL~l~p~hadam~NLgn  362 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKD-KGSVTEAVDCYNKALRLCPNHADAMNNLGN  362 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHh-ccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            4444566777777777777777777777777777777777777777776 677777777777777777777777777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++.+ ++.+++|..+|++|++..|.-+..+-+||.+|.+.|+.++|...++
T Consensus       363 i~~E-~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk  412 (966)
T KOG4626|consen  363 IYRE-QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK  412 (966)
T ss_pred             HHHH-hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence            7777 7777777777777777777777777777777777777777776666

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.48  E-value=4e-13  Score=115.63  Aligned_cols=107  Identities=11%  Similarity=0.085  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094          190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (331)
Q Consensus       190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekA  269 (331)
                      .--+.+|+++++++|++   +.++|.++.. .|++++|+.+|++++.++|.+..+|..+|.++.. .|++++|+.+|+++
T Consensus        10 ~~~~~~~~~al~~~p~~---~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~A   84 (144)
T PRK15359         10 KIPEDILKQLLSVDPET---VYASGYASWQ-EGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHA   84 (144)
T ss_pred             CCHHHHHHHHHHcCHHH---HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence            44578999999999986   5567878766 9999999999999999999999999999999998 99999999999999


Q ss_pred             HHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          270 VKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       270 L~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++++|+++.+++++|.++...|+.++|...++
T Consensus        85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~  116 (144)
T PRK15359         85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ  116 (144)
T ss_pred             HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999999999999999999998887

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.48  E-value=8.9e-13  Score=136.88  Aligned_cols=124  Identities=19%  Similarity=0.135  Sum_probs=66.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..+++.+|...+++++|+.+|++++.++|+++..+.++|.++.. .|++++|+.+|+++++++|+++.+++.++.+++. 
T Consensus       334 ~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-  411 (615)
T TIGR00990       334 LNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLE-LGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-  411 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence            34445555555555555555555555555555555555555433 5555555555555555555555555555555554 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|++++|+.+|+++++++|++..++..+|.++.+.|++++|...++
T Consensus       412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~  457 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR  457 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            5555555555555555555555555555555555555555544444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.48  E-value=9.3e-13  Score=136.75  Aligned_cols=125  Identities=14%  Similarity=0.125  Sum_probs=119.6

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...++|.+|...+++++|+.+|+++++.+|+++.+++.+|.+++. .|++++|+.+|+++++++|++..++..++.+++.
T Consensus       367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       367 SYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI-KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999776 9999999999999999999999999999999998


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       +|++++|+.+|+++++..|++..++..++.++...|++++|.+.++
T Consensus       446 -~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~  491 (615)
T TIGR00990       446 -EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD  491 (615)
T ss_pred             -CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence             9999999999999999999999999999999999999999998887

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.47  E-value=2.9e-13  Score=139.19  Aligned_cols=130  Identities=19%  Similarity=0.175  Sum_probs=117.8

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      .|+.-..|+|..|...+.++.|..+|.++++.+|+.+.+..|||.++.. +|++++|+.+|..||.++|+.++++.+++.
T Consensus       352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq-qgnl~~Ai~~YkealrI~P~fAda~~NmGn  430 (966)
T KOG4626|consen  352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ-QGNLDDAIMCYKEALRIKPTFADALSNMGN  430 (966)
T ss_pred             ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh-cccHHHHHHHHHHHHhcCchHHHHHHhcch
Confidence            5666678888888888889999999999999999999999999988665 999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      .+-+ +|+.+.|+.+|.+||.++|.-++++.+||.+|.+.|+..+|+..+++
T Consensus       431 t~ke-~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~  481 (966)
T KOG4626|consen  431 TYKE-MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRT  481 (966)
T ss_pred             HHHH-hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence            9988 99999999999999999999999999999999999999999988873

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.46  E-value=1.6e-12  Score=124.01  Aligned_cols=126  Identities=10%  Similarity=0.076  Sum_probs=110.7

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....+.|..|...|++++|+..|+++++.+|+++.++.++|.++.. .|++++|++.|++|++++|++..++.+++.++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  142 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL  142 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34567888999999999999999999999999999999999998665 99999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +. .|++++|+..|+++++++|+++.... +..++...++.++|...++
T Consensus       143 ~~-~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~  189 (296)
T PRK11189        143 YY-GGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLK  189 (296)
T ss_pred             HH-CCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHH
Confidence            98 99999999999999999999985322 2223445677888888875

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=4e-12  Score=110.14  Aligned_cols=127  Identities=21%  Similarity=0.291  Sum_probs=104.9

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....++|..|...+++++|+.+|++++..+|++..++..+|.++.. .|++++|+++|+++++.+|+++.++.+++.++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQ-LGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            34577889999999999999999999999999999999999988665 89999999999999999999988888888777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSA--PDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ld--P~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .. .|++++|+.+|++++...  +.....+..++.++...|+.+++...++
T Consensus       110 ~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  159 (234)
T TIGR02521       110 CQ-QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT  159 (234)
T ss_pred             HH-cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77 888888888888887753  3455677777777777777777776665

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.43  E-value=1.2e-12  Score=121.64  Aligned_cols=130  Identities=22%  Similarity=0.265  Sum_probs=117.0

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYAD  250 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~~al~~yA~  250 (331)
                      +-..-+|.+|.+.|+.+.|.+.|++|+.++|++.++++|||.+||. +|++++|.++|++|+. +|.   .+.+|-++++
T Consensus        70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~-qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~  147 (250)
T COG3063          70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFERALA-DPAYGEPSDTLENLGL  147 (250)
T ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-CCChHHHHHHHHHHHh-CCCCCCcchhhhhhHH
Confidence            3355678999999999999999999999999999999999999998 9999999999999998 554   6688888988


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhcc
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQ  306 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~  306 (331)
                      +.++ +|+++.|..+|+|+++++|+.+.....++...++.+++-+|.--++-.++.
T Consensus       148 Cal~-~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~  202 (250)
T COG3063         148 CALK-AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLERYQQR  202 (250)
T ss_pred             HHhh-cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHHHHhc
Confidence            8888 999999999999999999999999999999999999999998666533333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.43  E-value=2.5e-12  Score=106.67  Aligned_cols=106  Identities=17%  Similarity=0.110  Sum_probs=73.5

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020094          194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (331)
Q Consensus       194 e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ld  273 (331)
                      +.|++++..+|++..+...+|.++.. .+++++|++++++++.++|+++.++..++.+++. .+++++|+.+|+++++.+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQ-QGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence            35666777777777666666666554 6677777777777777777777777666666666 677777777777777777


Q ss_pred             CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          274 PDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       274 P~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |++..+++.+|.+++..|++++|.+.++
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~  109 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALD  109 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7777777777777777777777766655

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.42  E-value=8.9e-12  Score=107.92  Aligned_cols=126  Identities=20%  Similarity=0.243  Sum_probs=115.2

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADL  251 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld--P~d~~al~~yA~l  251 (331)
                      ....+++.+|...+++++|+.+|+++++.+|.++.++.++|.++.. .|++++|+++|++++...  |....++..++.+
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  144 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQ-QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLC  144 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cccHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence            3556789999999999999999999999999999999999999766 999999999999999864  5567788888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++. .|++++|+.+|+++++.+|++..++..++.++...|++++|...++
T Consensus       145 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  193 (234)
T TIGR02521       145 ALK-AGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLE  193 (234)
T ss_pred             HHH-cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            888 9999999999999999999999999999999999999999988777

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.42  E-value=4.3e-12  Score=130.87  Aligned_cols=128  Identities=13%  Similarity=0.042  Sum_probs=97.5

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.....++|.++...+++++|+.+|+++++++|+++.+++.+|.++.. .|++++|+.+|++|++++|.++.++..++.+
T Consensus       337 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~  415 (553)
T PRK12370        337 NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAGITKLWI  415 (553)
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            344455677777778888888888888888888888888888877655 7888888888888888888877666556666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ld-P~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++. .|++++|+.+++++++.. |+++..+..++.+|..+|+.++|...++
T Consensus       416 ~~~-~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~  465 (553)
T PRK12370        416 TYY-HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK  465 (553)
T ss_pred             HHh-ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            666 778888888888887775 5777777888888888888888877665

>PRK12370 invasion protein regulator; Provisional

Probab=99.41  E-value=2.9e-12  Score=132.13  Aligned_cols=129  Identities=12%  Similarity=0.033  Sum_probs=112.5

Q ss_pred             CcccccchHHHHHhC---------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          172 GSGFSGSNNNYSNNN---------HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG  242 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~---------gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~  242 (331)
                      +.....++|.+|...         +++++|+.+++++++++|+++.++..+|.++.. .|++++|+.+|++|++++|+++
T Consensus       294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~-~g~~~~A~~~~~~Al~l~P~~~  372 (553)
T PRK12370        294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTI-HSEYIVGSLLFKQANLLSPISA  372 (553)
T ss_pred             cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCH
Confidence            333445566655422         347999999999999999999999999988765 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      .+++.++.++.. .|++++|+.+|+++++++|.+..++..++.++...|++++|...+++
T Consensus       373 ~a~~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        373 DIKYYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            999999999998 99999999999999999999887777777778889999999988873

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.40  E-value=7.9e-12  Score=103.66  Aligned_cols=108  Identities=10%  Similarity=-0.009  Sum_probs=99.2

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.-...++|.++...+++++|+.+|++++..+|+++.++.++|.++.. .+++++|+.+|+++++.+|+++.+++.++.+
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~   94 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALDPDDPRPYFHAAEC   94 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCChHHHHHHHHH
Confidence            334467889999999999999999999999999999999999999766 8999999999999999999999999999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLA  281 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~  281 (331)
                      ++. .|++++|+.+|+++++++|++.....
T Consensus        95 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~  123 (135)
T TIGR02552        95 LLA-LGEPESALKALDLAIEICGENPEYSE  123 (135)
T ss_pred             HHH-cCCHHHHHHHHHHHHHhccccchHHH
Confidence            888 99999999999999999998876443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.40  E-value=6e-12  Score=123.63  Aligned_cols=113  Identities=16%  Similarity=0.151  Sum_probs=105.2

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      .-|..++..++|++|+.+|+++|+++|+++.+++++|.++.. .|++++|+.++++|++++|+++.+++.++.+++. .|
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-lg   84 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-LE   84 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-hC
Confidence            346778888999999999999999999999999999999766 9999999999999999999999999999999998 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      ++++|+.+|+++++++|++..+...++.+..++.+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~  119 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE  119 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999888777744

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.38  E-value=1.4e-12  Score=121.95  Aligned_cols=128  Identities=24%  Similarity=0.278  Sum_probs=101.0

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      ...+..-+|.++...|+.++|+.+|+++++.+|+++.++..|+.++.. .|+++++.+.+.+..+..|.|+.+|..++.+
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~-~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~  223 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLID-MGDYDEAREALKRLLKAAPDDPDLWDALAAA  223 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            456677899999999999999999999999999999999999988765 8899999999999999889999999899999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++. .|++++|+.+|+++++.+|+|+.++..+|.++...|+.++|....+
T Consensus       224 ~~~-lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~  272 (280)
T PF13429_consen  224 YLQ-LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR  272 (280)
T ss_dssp             HHH-HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred             hcc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888 9999999999999999999999999999999999999999987766

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.37  E-value=1.1e-11  Score=127.55  Aligned_cols=125  Identities=22%  Similarity=0.255  Sum_probs=82.2

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....++|.+|...|++++|+.+|+++++.+|+++.++.+++.++.. .++ .+|+.++++++++.|+++.++..++.+++
T Consensus       771 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  848 (899)
T TIGR02917       771 VLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLV  848 (899)
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence            3455566666666666666666666666666666666666666444 555 55666666666666666666666666666


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      . .|++++|+.+|+++++++|.+..++.+++.++++.|+.++|...++
T Consensus       849 ~-~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  895 (899)
T TIGR02917       849 E-KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD  895 (899)
T ss_pred             H-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5 6777777777777777777666777777777777777766666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.37  E-value=1.1e-11  Score=112.54  Aligned_cols=105  Identities=15%  Similarity=0.140  Sum_probs=96.0

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd--~ekAee~~erALeldP~d~~al~~yA  249 (331)
                      +.-...++|.+|...+++++|+.+|+++++++|+++.++.+||.+++...|+  +++|.+.++++++++|+++.++.++|
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA  151 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA  151 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            3445678899999999999999999999999999999999999987554677  59999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDC  277 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~  277 (331)
                      ..+++ .|++++|+.+|+++++++|.+.
T Consensus       152 ~~~~~-~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        152 SDAFM-QADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence            99998 9999999999999999999554

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.36  E-value=1.5e-11  Score=134.85  Aligned_cols=121  Identities=14%  Similarity=0.124  Sum_probs=111.2

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      +++..+...|++++|+.+|+++++++|+ +.++.++|.++.. .|++++|+.+|+++++++|+++.++.+++.++.. .|
T Consensus       581 ~La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~-lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G  657 (987)
T PRK09782        581 WLHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQ-RHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SG  657 (987)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CC
Confidence            3444455569999999999999999996 9999999988766 9999999999999999999999999999999998 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++++|+.+|++|++++|+++.+++++|.++...|+.++|...++
T Consensus       658 ~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~  701 (987)
T PRK09782        658 DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR  701 (987)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999998887

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.35  E-value=1.1e-11  Score=130.60  Aligned_cols=127  Identities=20%  Similarity=0.148  Sum_probs=94.0

Q ss_pred             cccccchHHHHHhCCCcHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSS----TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY  248 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ek----A~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~y  248 (331)
                      .....++|..|...|++++    |+.+|+++++++|+++.++.+||.++.. .|++++|+.+|+++++++|+++.++..+
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~-~g~~~eA~~~l~~al~l~P~~~~a~~~L  324 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIR-TGQNEKAIPLLQQSLATHPDLPYVRAMY  324 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3445667777777777764    6777777777777777777777777655 7777777777777777777777777777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.++.. .|++++|+..|+++++.+|++..++..++.++...|+.++|.+.++
T Consensus       325 a~~l~~-~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~  376 (656)
T PRK15174        325 ARALRQ-VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE  376 (656)
T ss_pred             HHHHHH-CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            777766 7777777777777777777776666666777777777777777666

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.35  E-value=1.6e-11  Score=130.36  Aligned_cols=128  Identities=13%  Similarity=0.022  Sum_probs=122.4

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      ......|+|+.....|.+++|+..++++++..|++..++.++|.+|.. ++++++|...+++++..+|+++.++..+|.+
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~-~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~  163 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKR-QQGIEAGRAEIELYFSGGSSSAREILLEAKS  163 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            355678999999999999999999999999999999999999999887 9999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.+ .|++++|+.+|+++++.+|++..++.++|.++...|+.++|...++
T Consensus       164 l~~-~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~  212 (694)
T PRK15179        164 WDE-IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQ  212 (694)
T ss_pred             HHH-hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            998 9999999999999999999999999999999999999999988776

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.35  E-value=1.9e-11  Score=128.78  Aligned_cols=123  Identities=20%  Similarity=0.186  Sum_probs=116.3

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK----AEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ek----Aee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .+++..|...+++++|+..|+++++.+|+++.++.++|.++.. .|++++    |+.+|+++++++|+++.++.+++.++
T Consensus       216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~-~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  294 (656)
T PRK15174        216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQ-SGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL  294 (656)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-cCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            3457788899999999999999999999999999999999776 999885    89999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .. .|++++|+.+|+++++++|++..++..++.++.+.|++++|...++
T Consensus       295 ~~-~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~  342 (656)
T PRK15174        295 IR-TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFV  342 (656)
T ss_pred             HH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            98 9999999999999999999999999999999999999999998887

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.35  E-value=7.3e-12  Score=119.87  Aligned_cols=108  Identities=17%  Similarity=0.182  Sum_probs=102.4

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES  264 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~  264 (331)
                      +.++|++|+..|.+||+++|.|+-++.+-|.++.. +|.|+.|++-|+.||.+||+...+|..++.+++- +|++++|++
T Consensus        93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~gk~~~A~~  170 (304)
T KOG0553|consen   93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LGKYEEAIE  170 (304)
T ss_pred             HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cCcHHHHHH
Confidence            45899999999999999999999999999999776 9999999999999999999999999999999998 999999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020094          265 YFDQAVKSAPDDCYVLASYAKFLWDAGDDE  294 (331)
Q Consensus       265 yfekAL~ldP~d~~vl~~LA~~L~~lG~~e  294 (331)
                      .|+|||+++|++..+..+|.++-.++.+..
T Consensus       171 aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  171 AYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999988888766

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.32  E-value=1.5e-11  Score=123.44  Aligned_cols=120  Identities=18%  Similarity=0.116  Sum_probs=110.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~  259 (331)
                      |.+|.-.+++++|+.||++|+++||....+|..+|.=+.+ ..+-..|++.|++||+++|.|..+|+-+|..+-. ++=.
T Consensus       337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh  414 (559)
T KOG1155|consen  337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMH  414 (559)
T ss_pred             hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcch
Confidence            4577778899999999999999999999999999966555 8999999999999999999999999999998887 8888


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       260 deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .=|+-||++|+++-|+|..+|..+|.||.++++.+||+|+++
T Consensus       415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCyk  456 (559)
T KOG1155|consen  415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYK  456 (559)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            899999999999999999999999999999999999999987

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.31  E-value=2.2e-11  Score=133.63  Aligned_cols=130  Identities=12%  Similarity=0.108  Sum_probs=122.3

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....|+|.++...|++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|++|++++|+++.++.+++.++
T Consensus       609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al  687 (987)
T PRK09782        609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGDIAQSREMLERAHKGLPDDPALIRQLAYVN  687 (987)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999877 99999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQ  304 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~  304 (331)
                      .. .|++++|+.+|++|++++|++..+.+.++.++....+++.+.+.++-.|
T Consensus       688 ~~-lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~  738 (987)
T PRK09782        688 QR-LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRW  738 (987)
T ss_pred             HH-CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            98 9999999999999999999999999999999999999999988776443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=4.7e-12  Score=130.78  Aligned_cols=121  Identities=16%  Similarity=0.149  Sum_probs=71.9

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd  258 (331)
                      ++.||.-+++++.|+.+|+||+++||.+..++..+|.=+-. ..+|++|..+|++||..+|.+..+|+-++.+++. +++
T Consensus       427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~-~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek  504 (638)
T KOG1126|consen  427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIA-TEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEK  504 (638)
T ss_pred             hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhh-hHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cch
Confidence            34566667777777777777777777666665555522211 4455666666666666666666666555555555 555


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++.|+-+|++|++++|.+-.+.-.++.++-++|+.++|-..++
T Consensus       505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~  547 (638)
T KOG1126|consen  505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYE  547 (638)
T ss_pred             hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHH
Confidence            5555555555555555555555555555555555555554444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.26  E-value=1.2e-10  Score=102.82  Aligned_cols=97  Identities=7%  Similarity=-0.083  Sum_probs=86.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      .+-+|..++..|++++|+..|+-+..++|.+...|++||.++.. .|+|.+|+..|.+|+.++|+|+..+.+.+.+++. 
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~-  115 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA-  115 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH-
Confidence            45678888899999999999999999999999999999988655 9999999999999999999999999888888887 


Q ss_pred             cCCHHHHHHHHHHHHHhCC
Q 020094          256 HKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP  274 (331)
                      .|+.+.|++.|+.|+....
T Consensus       116 lG~~~~A~~aF~~Ai~~~~  134 (157)
T PRK15363        116 CDNVCYAIKALKAVVRICG  134 (157)
T ss_pred             cCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999873

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.25  E-value=1.6e-10  Score=119.06  Aligned_cols=124  Identities=19%  Similarity=0.208  Sum_probs=113.9

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...+++.+|...|++++|+..+++++..+|+++.+++.+|.++.. .|++++|+++|+++++.+|+++.++..++.++..
T Consensus       738 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  816 (899)
T TIGR02917       738 NAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLA-QKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLE  816 (899)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            456788999999999999999999999999999999999988665 8999999999999999999999999999888888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       .|+ .+|+.++++++++.|+++.++..++.++...|++++|.+.++
T Consensus       817 -~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  861 (899)
T TIGR02917       817 -LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR  861 (899)
T ss_pred             -cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             888 889999999999999999999999999999999999998887

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.25  E-value=9.2e-11  Score=85.60  Aligned_cols=97  Identities=20%  Similarity=0.206  Sum_probs=85.5

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      .++|.++...+++++|+.+|+++++..|.+..++..+|.++.. .+++++|+++|.+++...|.+..++..++.++.. .
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK-L   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-H
Confidence            4678888889999999999999999999998888889988766 8899999999999999999998888888888887 8


Q ss_pred             CCHHHHHHHHHHHHHhCCC
Q 020094          257 KDASRAESYFDQAVKSAPD  275 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~  275 (331)
                      +++++|..+++++++.+|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999888773

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.24  E-value=1.7e-10  Score=128.46  Aligned_cols=123  Identities=15%  Similarity=0.199  Sum_probs=105.6

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI-----  252 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll-----  252 (331)
                      +.+..+...+++++|+.+|+++++++|+++.++..+|.++.. .|++++|+++|++|++++|++..++..++.++     
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~-~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMA-RKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence            446777888999999999999999999999999999988765 89999999999999999999888776554432     


Q ss_pred             -------------------------------------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchH
Q 020094          253 -------------------------------------WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEE  295 (331)
Q Consensus       253 -------------------------------------~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eE  295 (331)
                                                           .. .|++++|+.+|+++++++|+++.+++.++.+|.+.|+.++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence                                                 23 6899999999999999999999999999999999999999


Q ss_pred             HHHhhhh
Q 020094          296 EEQDNEE  302 (331)
Q Consensus       296 a~~~~~~  302 (331)
                      |...++.
T Consensus       514 A~~~l~~  520 (1157)
T PRK11447        514 ADALMRR  520 (1157)
T ss_pred             HHHHHHH
Confidence            9888873

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.24  E-value=1.6e-10  Score=110.30  Aligned_cols=113  Identities=16%  Similarity=0.097  Sum_probs=103.4

Q ss_pred             CCcHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094          187 HGSSSTDAYYEKMIEANP---G-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP---~-n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA  262 (331)
                      ...+.++..+.++|...|   . .+.+++++|.++.. .|++++|+..|.+|++++|+++.+|..++.++.. .|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDS-LGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence            466899999999997554   3 36779999988665 9999999999999999999999999999998888 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       263 ~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +..|+++++++|++..++.++|.++...|++++|...++
T Consensus       118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~  156 (296)
T PRK11189        118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL  156 (296)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999999999999999999998887

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.24  E-value=1.2e-11  Score=127.78  Aligned_cols=117  Identities=19%  Similarity=0.173  Sum_probs=109.0

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (331)
Q Consensus       183 y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA  262 (331)
                      +....++++|+.+|++||..+|.+-.+|+.+|.++. ++++++.|+.+|++|+++||.+..++..++.++.. .|+.++|
T Consensus       465 ~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~-Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~-~k~~d~A  542 (638)
T KOG1126|consen  465 SIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL-KQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ-LKRKDKA  542 (638)
T ss_pred             hhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee-ccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-hhhhhHH
Confidence            344578999999999999999999999999999855 49999999999999999999999999888888887 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       263 ~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.+|++|+.+||.|+-..+..+.++..+++++||-.++|
T Consensus       543 L~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LE  581 (638)
T KOG1126|consen  543 LQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELE  581 (638)
T ss_pred             HHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHH
Confidence            999999999999999999999999999999999988887

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.23  E-value=2.5e-10  Score=110.13  Aligned_cols=124  Identities=10%  Similarity=0.057  Sum_probs=91.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-----ILSLYAD  250 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~-----al~~yA~  250 (331)
                      ..+++..|...|++++|+.+|+++++.+|.+..++..++.++.. .|++++|+++++++++.+|.+..     ++..++.
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQ-EKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHH-hchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            45667778888888888888888887777777777777777554 77777777777777777776532     3344555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +++. .+++++|+.+|+++++.+|++..++..++.++.+.|++++|.+.++
T Consensus       189 ~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  238 (389)
T PRK11788        189 QALA-RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALE  238 (389)
T ss_pred             HHHh-CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            5566 7777777777777777777777777777777777777777777666

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.21  E-value=2.7e-10  Score=107.24  Aligned_cols=124  Identities=18%  Similarity=0.106  Sum_probs=116.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      +.-++......|+|..|+..++++...+|+|++++..+|.+|.. .|+++.|..-|.+|+++.|+++.++.+++..++. 
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L-  180 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-LGRFDEARRAYRQALELAPNEPSIANNLGMSLLL-  180 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH-
Confidence            33478888999999999999999999999999999999999765 9999999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|+++.|++++.++...-+.+..+..+++.+....|++.+|++...
T Consensus       181 ~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         181 RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            9999999999999999988999999999999999999999987654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.21  E-value=2.6e-10  Score=103.49  Aligned_cols=124  Identities=13%  Similarity=0.006  Sum_probs=66.1

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHH-
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEV-------RGDFAKAEELCGRAILANPSDGNIL-  245 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~---~l~nLA~~L~~~-------~gd~ekAee~~erALeldP~d~~al-  245 (331)
                      .++|.+|...+++++|+..|+++++.+|+++.   +++.+|.++...       .+++++|++.|++++..+|++..++ 
T Consensus        74 ~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  153 (235)
T TIGR03302        74 LDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPD  153 (235)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHH
Confidence            44555555556666666666666666555544   344445443321       1445556666666666666554332 


Q ss_pred             ----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          246 ----------------SLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       246 ----------------~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                                      ..++.+++. .|++.+|+..|+++++..|++   ..+++.++.++..+|+++++.+.++
T Consensus       154 a~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~  227 (235)
T TIGR03302       154 AKKRMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA  227 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                            122333443 566666666666666664432   3555666666666666666655443

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.21  E-value=3.7e-10  Score=120.87  Aligned_cols=123  Identities=14%  Similarity=0.077  Sum_probs=115.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..++|.++...+++++|+.+|+++++.+|+++.++..+|.++.. .+++++|+.+++++++.+|+++. +..++.++.. 
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~-~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~-  128 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLAD-AGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR-  128 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH-
Confidence            57899999999999999999999999999999999999988766 99999999999999999999999 9889888888 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|++++|+.+|+++++++|++..++..++.++...+..++|...++
T Consensus       129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~  174 (765)
T PRK10049        129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID  174 (765)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            9999999999999999999999999999999999999888776655

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.21  E-value=3.3e-10  Score=109.29  Aligned_cols=124  Identities=16%  Similarity=0.156  Sum_probs=109.5

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIW  253 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d-~~al~~yA~ll~  253 (331)
                      +..+++..+...+++++|+.+|+++++.+|++..++..+|.++.. .|++++|+++|+++++.+|.+ ..++..++.++.
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~  260 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALA-QGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ  260 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence            345788888999999999999999999999999999999988766 999999999999999999976 456667777777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      . .|++++|+.+++++++..|++. ++..++.++.+.|+.++|...++
T Consensus       261 ~-~g~~~~A~~~l~~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~  306 (389)
T PRK11788        261 A-LGDEAEGLEFLRRALEEYPGAD-LLLALAQLLEEQEGPEAAQALLR  306 (389)
T ss_pred             H-cCCHHHHHHHHHHHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHH
Confidence            7 9999999999999999999764 44889999999999999998887

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.21  E-value=4.6e-10  Score=89.72  Aligned_cols=104  Identities=11%  Similarity=0.070  Sum_probs=92.2

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYAD  250 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~  250 (331)
                      .+.+..+...+++++|+.+|++++..+|++   +.+++.+|.++.. .+++++|+.+|++++..+|++   +.++..++.
T Consensus         6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            467888999999999999999999999987   5688889999766 999999999999999999985   677888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLAS  282 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~  282 (331)
                      ++.. .+++++|+.+|+++++..|++..+...
T Consensus        85 ~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        85 SLQE-LGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHH-hCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            8887 999999999999999999988765543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.19  E-value=4.9e-10  Score=101.62  Aligned_cols=130  Identities=16%  Similarity=0.127  Sum_probs=112.9

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---I  244 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~---~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~---a  244 (331)
                      -...-..+.+..|...+++++|+..|++++..+|+++   .+++.+|.++.. .+++++|+..|+++++.+|+++.   +
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYK-SGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            4445678899999999999999999999999999987   577889988766 99999999999999999998886   5


Q ss_pred             HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCchHHHHh
Q 020094          245 LSLYADLIWQAH--------KDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGDDEEEEQD  299 (331)
Q Consensus       245 l~~yA~ll~~~~--------Gd~deA~~yfekAL~ldP~d~~vl-----------------~~LA~~L~~lG~~eEa~~~  299 (331)
                      ++.++.+++. .        +++++|++.|++++..+|++..++                 +.++.++++.|++.+|...
T Consensus       110 ~~~~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~  188 (235)
T TIGR03302       110 YYLRGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR  188 (235)
T ss_pred             HHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            7778888776 4        789999999999999999886543                 4678889999999999988


Q ss_pred             hhh
Q 020094          300 NEE  302 (331)
Q Consensus       300 ~~~  302 (331)
                      +++
T Consensus       189 ~~~  191 (235)
T TIGR03302       189 FET  191 (235)
T ss_pred             HHH
Confidence            873

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.19  E-value=2.3e-10  Score=101.02  Aligned_cols=102  Identities=14%  Similarity=0.003  Sum_probs=94.6

Q ss_pred             HHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094          198 KMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (331)
Q Consensus       198 rAL~~n-P~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d  276 (331)
                      .+..+. ++.-+.++.||..++. .|++++|+..|+-++.+||.+...|+++|.++.. +|++++|+..|.+|+.++|+|
T Consensus        25 ~l~~~~~~~~l~~lY~~A~~ly~-~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~dd  102 (157)
T PRK15363         25 MLLDDDVTQPLNTLYRYAMQLME-VKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDA  102 (157)
T ss_pred             HHHCCChHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCC
Confidence            344566 7788889999999887 9999999999999999999999999999998888 999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          277 CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       277 ~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +..++++|.++...|+.++|.+.++
T Consensus       103 p~~~~~ag~c~L~lG~~~~A~~aF~  127 (157)
T PRK15363        103 PQAPWAAAECYLACDNVCYAIKALK  127 (157)
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999987766

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.16  E-value=5.5e-10  Score=124.33  Aligned_cols=130  Identities=16%  Similarity=0.160  Sum_probs=118.0

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....++|.+|...+++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+++|+++++.+|+++.++..++.++.
T Consensus       604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~-~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~  682 (1157)
T PRK11447        604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIA-QGDLAAARAQLAKLPATANDSLNTQRRVALAWA  682 (1157)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence            3467899999999999999999999999999999999999999766 999999999999999999999999988998888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGDDEEEEQDNEESQH  305 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~------~vl~~LA~~L~~lG~~eEa~~~~~~~~~  305 (331)
                      . .|++++|+.+|++++...|+++      .++..++.++...|+.++|...++....
T Consensus       683 ~-~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        683 A-LGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             h-CCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            7 9999999999999999877443      5778889999999999999999884443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.16  E-value=1.9e-10  Score=85.52  Aligned_cols=68  Identities=24%  Similarity=0.259  Sum_probs=62.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 020094          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-DASRAESYFDQAVKSAP  274 (331)
Q Consensus       205 ~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G-d~deA~~yfekAL~ldP  274 (331)
                      +++.++..+|.+++. .+++++|+.+|.+||+++|+++.+++++|.+++. +| ++++|+.+|+++++++|
T Consensus         1 e~a~~~~~~g~~~~~-~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQ-QGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TSHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            367889999999776 9999999999999999999999999999999988 88 79999999999999998

...

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=5.5e-10  Score=112.28  Aligned_cols=122  Identities=13%  Similarity=0.069  Sum_probs=112.6

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      -++.-|..+.+...|++.|++|+.++|.|-.+|+.+|+++.. .+=..=|+-||++|+++-|+|..+|..+|.++.. .+
T Consensus       369 LmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~k-l~  446 (559)
T KOG1155|consen  369 LMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMHFYALYYFQKALELKPNDSRLWVALGECYEK-LN  446 (559)
T ss_pred             HhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHH-hc
Confidence            356678889999999999999999999999999999999554 8888889999999999999999999999998876 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.++|+++|++|+.....+..++..+|.++.++++.+||..-++
T Consensus       447 ~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~ye  490 (559)
T KOG1155|consen  447 RLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYE  490 (559)
T ss_pred             cHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHH
Confidence            99999999999999999889999999999999999999976554

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.14  E-value=2.3e-10  Score=107.09  Aligned_cols=130  Identities=22%  Similarity=0.194  Sum_probs=103.9

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY  248 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~n--P~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~y  248 (331)
                      ++..+...+..+|...++++++...++++....  +.++.++..+|.++.. .|+.++|+++|++|++++|+|+.++..+
T Consensus       108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~-~G~~~~A~~~~~~al~~~P~~~~~~~~l  186 (280)
T PF13429_consen  108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQ-LGDPDKALRDYRKALELDPDDPDARNAL  186 (280)
T ss_dssp             ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHH-CCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred             cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence            345566678889999999999999999988765  6889999999999665 9999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      ++++.. .|+++++...+++..+..|.++.++..+|.++..+|+.++|-..++.
T Consensus       187 ~~~li~-~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~  239 (280)
T PF13429_consen  187 AWLLID-MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEK  239 (280)
T ss_dssp             HHHHCT-TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHH-CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccc
Confidence            999988 99999999999999999999999999999999999999999988873

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.08  E-value=3.1e-09  Score=93.24  Aligned_cols=103  Identities=18%  Similarity=0.249  Sum_probs=87.8

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA  249 (331)
                      .....++|..|...+++++|+.+|++++.++|+.   +.++.++|.++.. .|++++|+.+|++++..+|++..++..++
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            3346788899999999999999999999887764   4688889988766 99999999999999999999999998888


Q ss_pred             HHHHHHcCC--------------HHHHHHHHHHHHHhCCCCH
Q 020094          250 DLIWQAHKD--------------ASRAESYFDQAVKSAPDDC  277 (331)
Q Consensus       250 ~ll~~~~Gd--------------~deA~~yfekAL~ldP~d~  277 (331)
                      .++.. .++              +++|+.++++++..+|++.
T Consensus       114 ~~~~~-~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~  154 (172)
T PRK02603        114 VIYHK-RGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY  154 (172)
T ss_pred             HHHHH-cCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence            88877 776              6788888888888898773

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.07  E-value=4.1e-09  Score=91.90  Aligned_cols=115  Identities=18%  Similarity=0.150  Sum_probs=88.3

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      -...+++.++...+++++|+.+|++++.+.|+.   +.++.++|.++.. .|++++|+.+|++|+.++|.+...+.+++.
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            346778889999999999999999999887763   4578888888665 899999999999999999999998888888


Q ss_pred             HHH-------HHcCCHH-------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          251 LIW-------QAHKDAS-------RAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       251 ll~-------~~~Gd~d-------eA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                      +++       . .|+++       +|+.+|++++..+|.+.   ......+...|++
T Consensus       115 i~~~~~~~~~~-~g~~~~A~~~~~~a~~~~~~a~~~~p~~~---~~~~~~~~~~~~~  167 (168)
T CHL00033        115 ICHYRGEQAIE-QGDSEIAEAWFDQAAEYWKQAIALAPGNY---IEAQNWLKITGRF  167 (168)
T ss_pred             HHHHhhHHHHH-cccHHHHHHHHHHHHHHHHHHHHhCcccH---HHHHHHHHHhcCC
Confidence            887       5 66765       66666677788888554   3333444444444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.05  E-value=2.7e-09  Score=100.62  Aligned_cols=128  Identities=20%  Similarity=0.138  Sum_probs=118.9

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      +.... +|++..|...|+-+.+..+..+.+..+|.+..++..++..+.. .|||..|+..+++|+.++|+|..+|..++.
T Consensus        65 ~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~-~g~~~~A~~~~rkA~~l~p~d~~~~~~lga  142 (257)
T COG5010          65 EDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIR-NGNFGEAVSVLRKAARLAPTDWEAWNLLGA  142 (257)
T ss_pred             chHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHH-hcchHHHHHHHHHHhccCCCChhhhhHHHH
Confidence            34445 8899999999999999999999999999999999889988776 999999999999999999999999988877


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +|.+ .|++++|..-|.+|+++.|+++.++-|++..|.-.|+.+.|.+.+.
T Consensus       143 aldq-~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll  192 (257)
T COG5010         143 ALDQ-LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL  192 (257)
T ss_pred             HHHH-ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence            7777 9999999999999999999999999999999999999999998876

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.04  E-value=2.9e-09  Score=114.04  Aligned_cols=127  Identities=12%  Similarity=0.023  Sum_probs=113.0

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCC-------------C--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-------------N--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS  240 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~-------------n--~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~  240 (331)
                      ..+++..+...+++++|+.++++++..+|.             +  ..++..+|.++.. .|++++|++.+++++...|+
T Consensus       313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~-~g~~~eA~~~l~~al~~~P~  391 (765)
T PRK10049        313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY-SNDLPQAEMRARELAYNAPG  391 (765)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCC
Confidence            455666778899999999999999999873             2  3466778888665 99999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094          241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQ  304 (331)
Q Consensus       241 d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~  304 (331)
                      ++.++..++.++.. .|++++|++.++++++++|++..+++.++.++...+++++|++.++...
T Consensus       392 n~~l~~~lA~l~~~-~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll  454 (765)
T PRK10049        392 NQGLRIDYASVLQA-RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVV  454 (765)
T ss_pred             CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            99999999998888 9999999999999999999999999999999999999999998776443

>PLN02789 farnesyltranstransferase

Probab=99.04  E-value=5.6e-09  Score=101.75  Aligned_cols=118  Identities=14%  Similarity=0.076  Sum_probs=98.9

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-
Q 020094          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA-  259 (331)
Q Consensus       182 ~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g-d~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~-  259 (331)
                      ++...+.+++|+..+.++|++||++..+|...+.++.. .+ ++++|+.++.++++.+|++..+|...+.++.. .++. 
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~  123 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDA  123 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchh
Confidence            45556778999999999999999999999888888766 55 68899999999999999999999888777766 6653 


Q ss_pred             -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          260 -SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       260 -deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       ++++.+++++++.+|+|..+|...+.++...+++++|.+.+.
T Consensus       124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~  166 (320)
T PLN02789        124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH  166 (320)
T ss_pred             hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence             678888889999999999999999999999998888877665

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=99.03  E-value=5.7e-09  Score=105.40  Aligned_cols=124  Identities=15%  Similarity=0.087  Sum_probs=115.2

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      .+..|..++..+++++|+..++..++..|+|+.++...+.++.+ .+++++|++.+++++.++|+.+.++.+|+..++. 
T Consensus       309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-  386 (484)
T COG4783         309 QYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-  386 (484)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-
Confidence            35567788899999999999999999999999999999999766 9999999999999999999999999999999999 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|++.+|+.++++.+..+|+|+..|..|+.+|..+|+..++.....
T Consensus       387 ~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A  432 (484)
T COG4783         387 GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA  432 (484)
T ss_pred             cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence            9999999999999999999999999999999999999888865443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=1e-09  Score=112.38  Aligned_cols=116  Identities=11%  Similarity=0.025  Sum_probs=58.5

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      ..++.+|...++|++|+.||+.||..+|+|..+|+.||..|.- -.+..+|+..|+||+++.|++..+++++|..++. .
T Consensus       434 ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mN-l  511 (579)
T KOG1125|consen  434 SGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAYNRALQLQPGYVRVRYNLGISCMN-L  511 (579)
T ss_pred             hhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhh-h
Confidence            3344455555555555555555555555555555555544432 3445555555555555555555555555555554 5


Q ss_pred             CCHHHHHHHHHHHHHhCCC----------CHHHHHHHHHHHHHcCCch
Q 020094          257 KDASRAESYFDQAVKSAPD----------DCYVLASYAKFLWDAGDDE  294 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~----------d~~vl~~LA~~L~~lG~~e  294 (331)
                      |.|.||.++|-.||.+.+.          +..+|..|-.++...++.+
T Consensus       512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D  559 (579)
T KOG1125|consen  512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSD  559 (579)
T ss_pred             hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence            5555555555555554332          1134555555555555444

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.00  E-value=5.6e-09  Score=76.01  Aligned_cols=91  Identities=19%  Similarity=0.254  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       209 ~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                      +++++|.++.. .+++++|+.+++++++..|++..++..++.+++. .+++++|+.+|+++++..|.+..++..++.++.
T Consensus         2 ~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (100)
T cd00189           2 ALLNLGNLYYK-LGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY   79 (100)
T ss_pred             HHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence            46678888666 8999999999999999999999999899998888 999999999999999999999999999999999


Q ss_pred             HcCCchHHHHhhh
Q 020094          289 DAGDDEEEEQDNE  301 (331)
Q Consensus       289 ~lG~~eEa~~~~~  301 (331)
                      ..++.+++.+.++
T Consensus        80 ~~~~~~~a~~~~~   92 (100)
T cd00189          80 KLGKYEEALEAYE   92 (100)
T ss_pred             HHHhHHHHHHHHH
Confidence            9999999988776

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.00  E-value=2.2e-09  Score=108.65  Aligned_cols=133  Identities=21%  Similarity=0.172  Sum_probs=86.8

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------------------------------
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV------------------------------  220 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~------------------------------  220 (331)
                      -++...+.=|+.++-.++|+.|+.-|++++.++|++...+.+++.++|+.                              
T Consensus       392 ~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAei  471 (606)
T KOG0547|consen  392 ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEI  471 (606)
T ss_pred             CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            55666666677777777777777777777777777777776666665541                              


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          221 ---RGDFAKAEELCGRAILANPS------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       221 ---~gd~ekAee~~erALeldP~------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                         ++++++|+++|.+||++.|.      ++..+..-|.++.+..+++.+|+.++++|+++||....++..+|.+..+.|
T Consensus       472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~  551 (606)
T KOG0547|consen  472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG  551 (606)
T ss_pred             HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence               34555666666666666665      554444555555444566666666666666666666667777777777777


Q ss_pred             CchHHHHhhhhh
Q 020094          292 DDEEEEQDNEES  303 (331)
Q Consensus       292 ~~eEa~~~~~~~  303 (331)
                      +-+||...+|.+
T Consensus       552 ~i~eAielFEks  563 (606)
T KOG0547|consen  552 KIDEAIELFEKS  563 (606)
T ss_pred             hHHHHHHHHHHH
Confidence            777776666543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=1.6e-09  Score=110.23  Aligned_cols=108  Identities=16%  Similarity=0.191  Sum_probs=101.4

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~  259 (331)
                      +..++..++|..|+.+|.+||..+|+++.++.|.|.++. .++.+..|+..++.+|+++|++...|..-+.++.. +.+|
T Consensus       365 Gne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~-kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk~y  442 (539)
T KOG0548|consen  365 GNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL-KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MKEY  442 (539)
T ss_pred             HHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HHHH
Confidence            556778899999999999999999999999999998854 49999999999999999999999999999888888 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          260 SRAESYFDQAVKSAPDDCYVLASYAKFLWD  289 (331)
Q Consensus       260 deA~~yfekAL~ldP~d~~vl~~LA~~L~~  289 (331)
                      ++|...|+++++.||++.++...+..++..
T Consensus       443 dkAleay~eale~dp~~~e~~~~~~rc~~a  472 (539)
T KOG0548|consen  443 DKALEAYQEALELDPSNAEAIDGYRRCVEA  472 (539)
T ss_pred             HHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            999999999999999999999999999885

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.99  E-value=1.6e-09  Score=79.81  Aligned_cols=63  Identities=24%  Similarity=0.447  Sum_probs=39.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          213 YARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC  277 (331)
Q Consensus       213 LA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~  277 (331)
                      +|..++. .|++++|+.+|+++++.+|+++.+|+.++.+++. +|++++|+.+|+++++++|+++
T Consensus         3 ~a~~~~~-~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQ-QGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHH-CTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence            4445444 6666666666666666666666666666666665 6666666666666666666553

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.99  E-value=1e-08  Score=109.33  Aligned_cols=123  Identities=18%  Similarity=0.202  Sum_probs=114.4

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      ...|..++..|+++.|+..+.++|+++|.++.++..||.++. .+||.++|...+-.|..++|+|...|..++....+ +
T Consensus       143 l~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyE-qrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~  220 (895)
T KOG2076|consen  143 LGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYE-QRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-L  220 (895)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH-HcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-c
Confidence            457888889999999999999999999999999999999954 49999999999999999999999999999998888 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |++++|.-||.|||+.+|.+-...+..+.+|.++|+...|-.-++
T Consensus       221 ~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~  265 (895)
T KOG2076|consen  221 GNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFL  265 (895)
T ss_pred             ccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence            999999999999999999999999999999999999888865444

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.96  E-value=4e-09  Score=106.73  Aligned_cols=121  Identities=13%  Similarity=0.132  Sum_probs=114.8

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd  258 (331)
                      +|..|-...+.++-...|.+|..+||.|+++++.-|++.+. .++|++|+.-|++|+.++|++...+..++-++|+ +++
T Consensus       366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl-L~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k  443 (606)
T KOG0547|consen  366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL-LQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHK  443 (606)
T ss_pred             HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH-HHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHH
Confidence            56677788889999999999999999999999999999776 9999999999999999999999999999999999 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++++...|+.+++..|+.++++...|.+|.+.+++..|.+.+.
T Consensus       444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD  486 (606)
T KOG0547|consen  444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD  486 (606)
T ss_pred             HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence            9999999999999999999999999999999999999998775

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.95  E-value=2.1e-09  Score=79.29  Aligned_cols=64  Identities=17%  Similarity=0.224  Sum_probs=59.2

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG  242 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~  242 (331)
                      ++|..+...|++++|+.+|+++++.+|+++.+++.+|.++.. +|++++|+.+|+++++++|++|
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCC
Confidence            478899999999999999999999999999999999999876 9999999999999999999986

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.93  E-value=2.5e-09  Score=109.59  Aligned_cols=109  Identities=13%  Similarity=0.137  Sum_probs=102.0

Q ss_pred             CcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094          188 GSSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (331)
Q Consensus       188 d~ekA~e~yerAL~~nP--~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y  265 (331)
                      .+..-.++|-.|...+|  .++++...||.+++. .++|++|+.+|+.||..+|+|...|+.|+..+.. -.+.++|+..
T Consensus       409 ~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l-s~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsA  486 (579)
T KOG1125|consen  409 HLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL-SGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISA  486 (579)
T ss_pred             HHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc-chHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHH
Confidence            34667788999999999  799999999988776 9999999999999999999999999999999988 8899999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          266 FDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       266 fekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      |.||+++.|.-..+++++|+.++++|.++||.+
T Consensus       487 Y~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~  519 (579)
T KOG1125|consen  487 YNRALQLQPGYVRVRYNLGISCMNLGAYKEAVK  519 (579)
T ss_pred             HHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence            999999999999999999999999999999976

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.92  E-value=1.2e-08  Score=100.29  Aligned_cols=89  Identities=16%  Similarity=0.096  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       211 ~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      ...|..++. .++|.+|+++|++||+++|+++.++.+++.++.. .|++++|+.++++|++++|++..+++.+|.+|..+
T Consensus         6 ~~~a~~a~~-~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088          6 EDKAKEAFV-DDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            344555555 8999999999999999999999999999999998 99999999999999999999999999999999999


Q ss_pred             CCchHHHHhhh
Q 020094          291 GDDEEEEQDNE  301 (331)
Q Consensus       291 G~~eEa~~~~~  301 (331)
                      |++++|...++
T Consensus        84 g~~~eA~~~~~   94 (356)
T PLN03088         84 EEYQTAKAALE   94 (356)
T ss_pred             CCHHHHHHHHH
Confidence            99999987665

>TIGR00540 hemY_coli hemY protein

Probab=98.92  E-value=2.1e-08  Score=99.66  Aligned_cols=129  Identities=16%  Similarity=0.057  Sum_probs=109.0

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL-GNYARFLKEVRGDFAKAEELCGRAILANPSDG--NILSLY  248 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l-~nLA~~L~~~~gd~ekAee~~erALeldP~d~--~al~~y  248 (331)
                      +..+...+|..+...|++++|++.++++++.+|++.... ..+..+.....++..++++.++++++.+|+|+  .++..|
T Consensus       262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sL  341 (409)
T TIGR00540       262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRAL  341 (409)
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHH
Confidence            556788899999999999999999999999999998632 11112222225788999999999999999999  899999


Q ss_pred             HHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          249 ADLIWQAHKDASRAESYFD--QAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfe--kAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      |++++. .|++++|.++|+  ++++..|++.. +..++.++++.|+.++|...+++
T Consensus       342 g~l~~~-~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~  395 (409)
T TIGR00540       342 GQLLMK-HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD  395 (409)
T ss_pred             HHHHHH-cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence            999998 999999999999  68888885554 66999999999999999887773

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.91  E-value=3.2e-09  Score=82.53  Aligned_cols=81  Identities=26%  Similarity=0.374  Sum_probs=59.1

Q ss_pred             CCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020094          186 NHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE  263 (331)
Q Consensus       186 ~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~  263 (331)
                      .++++.|+.+|+++++.+|.  +..+++.+|.+++. .|+|++|++++++ ++.+|.++.+...+|.+++. +|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence            36777888888888888774  45566667777666 7888888888877 77777777777777777777 88888888


Q ss_pred             HHHHHH
Q 020094          264 SYFDQA  269 (331)
Q Consensus       264 ~yfekA  269 (331)
                      ++|++|
T Consensus        79 ~~l~~~   84 (84)
T PF12895_consen   79 KALEKA   84 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHhcC
Confidence            877765

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.90  E-value=3.9e-09  Score=78.43  Aligned_cols=64  Identities=23%  Similarity=0.210  Sum_probs=59.9

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANP  239 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g-d~ekAee~~erALeldP  239 (331)
                      ...++|.++...+++++|+.+|+++|+.+|+++.+++++|.++.. .+ ++++|+++|++|++++|
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence            345789999999999999999999999999999999999999766 88 79999999999999998

...

>PLN02789 farnesyltranstransferase

Probab=98.90  E-value=4.4e-08  Score=95.50  Aligned_cols=110  Identities=10%  Similarity=0.016  Sum_probs=98.6

Q ss_pred             hHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          179 NNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       179 ~A~~y~s~g-d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd--~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      -+.++...+ ++++++.++.++++.+|++..+|...+.++.. .++  +++++.++.++|++||+|..+|...++++.. 
T Consensus        77 R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~-  154 (320)
T PLN02789         77 RRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT-  154 (320)
T ss_pred             HHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence            345666776 57999999999999999999999999888655 665  3788999999999999999999999998888 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      .+++++|++++.++|+.+|.|..+|...+.++.+.
T Consensus       155 l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        155 LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            99999999999999999999999999999998876

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.89  E-value=4e-08  Score=78.41  Aligned_cols=95  Identities=18%  Similarity=0.168  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVL  280 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl  280 (331)
                      +++++..|..+.. .+++++|+++|.+++..+|++   +.+++.++.+++. .+++++|+.+|++++..+|++   ..++
T Consensus         2 ~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~   79 (119)
T TIGR02795         2 EEAYYDAALLVLK-AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDAL   79 (119)
T ss_pred             cHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence            4567888888666 999999999999999999987   5688889999888 999999999999999999875   6789


Q ss_pred             HHHHHHHHHcCCchHHHHhhhhh
Q 020094          281 ASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       281 ~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      +.++.++.+.++.+++.+.+++.
T Consensus        80 ~~~~~~~~~~~~~~~A~~~~~~~  102 (119)
T TIGR02795        80 LKLGMSLQELGDKEKAKATLQQV  102 (119)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHH
Confidence            99999999999999999888733

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.88  E-value=3.2e-08  Score=107.20  Aligned_cols=127  Identities=11%  Similarity=0.043  Sum_probs=106.4

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      ..-.+..+....+.|+++.|+..|+++++.+|+++.....++.++.. .|++++|+.++++++.-+|.....+..+|.++
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~-~G~~~~A~~~~eka~~p~n~~~~~llalA~ly  112 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGW-AGRDQEVIDVYERYQSSMNISSRGLASAARAY  112 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHH-cCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence            33456778889999999999999999999999996554477777555 79999999999999943344444443446677


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .. +|++++|+++|+++++.+|+++.++..++.++.+.++.++|.+.++
T Consensus       113 ~~-~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~  160 (822)
T PRK14574        113 RN-EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT  160 (822)
T ss_pred             HH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            77 9999999999999999999999999999999999999999988776

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.88  E-value=2.6e-08  Score=106.04  Aligned_cols=127  Identities=10%  Similarity=0.036  Sum_probs=109.7

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHH---HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYE---KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~ye---rAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA  249 (331)
                      +.....+-.+....+...++-+.+-   ...+..|++++++.+||.+... .|.+++|+++++++++++|++..++.+++
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~i~~~-~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a  127 (694)
T PRK15179         49 RELLQQARQVLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVARALEA-AHRSDEGLAVWRGIHQRFPDSSEAFILML  127 (694)
T ss_pred             HHHHHHHHHHHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHHHHHH-cCCcHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            3344455556666665544444443   4445689999999999999766 99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++.+ ++++++|+..+++++..+|++..++..+|.++.++|+++||+..++
T Consensus       128 ~~L~~-~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~  178 (694)
T PRK15179        128 RGVKR-QQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFE  178 (694)
T ss_pred             HHHHH-hccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHH
Confidence            99999 9999999999999999999999999999999999999999999887

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.87  E-value=3.6e-08  Score=85.92  Aligned_cols=113  Identities=17%  Similarity=0.129  Sum_probs=95.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHKDASR  261 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n--~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~~al~~yA~ll~~~~Gd~de  261 (331)
                      ..+..+...+.+.++.++.+  ..+++++|.++.. .+++++|+.+|++|+.+.|+   .+.++.+++.++.. .|++++
T Consensus        13 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~e   90 (168)
T CHL00033         13 KTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQS-EGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHTK   90 (168)
T ss_pred             cccccchhhhhHhccCCchhHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHHH
Confidence            55788888887777777776  5566888887655 89999999999999999776   34588889888888 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCchHHHHhhh
Q 020094          262 AESYFDQAVKSAPDDCYVLASYAKFLW-------DAGDDEEEEQDNE  301 (331)
Q Consensus       262 A~~yfekAL~ldP~d~~vl~~LA~~L~-------~lG~~eEa~~~~~  301 (331)
                      |+.+|++|+.++|.....+.+++.++.       ..|+++++...++
T Consensus        91 A~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~  137 (168)
T CHL00033         91 ALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD  137 (168)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence            999999999999999999999999999       7778877765554

>PRK11906 transcriptional regulator; Provisional

Probab=98.84  E-value=4.3e-08  Score=99.18  Aligned_cols=113  Identities=15%  Similarity=0.045  Sum_probs=102.7

Q ss_pred             CcHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          188 GSSSTDAYYEKMI---EANPGNALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       188 d~ekA~e~yerAL---~~nP~n~~~l~nLA~~L~~~--------~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      ..+.|+.+|.+++   .++|+.+.++..+|.+++..        ..+..+|.++.++|+++||+|+.++..+|.+++. .
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-S  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-h
Confidence            4588999999999   99999999999998775543        2346789999999999999999999999999999 8


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++++.|...|++|+.++|+.+.+|+..|.++.-.|+.+++....+
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            889999999999999999999999999999999999999987776

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.84  E-value=4.1e-08  Score=93.72  Aligned_cols=124  Identities=18%  Similarity=0.133  Sum_probs=99.0

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHH-------------------------------------HHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLG-------------------------------------NYARFLKE  219 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~-------------------------------------nLA~~L~~  219 (331)
                      ...+..+...+++++|..+++++++.+|++..++.                                     .+|.++. 
T Consensus        47 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~-  125 (355)
T cd05804          47 HVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLE-  125 (355)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHH-
Confidence            34566777888888899999888888888875433                                     2233333 


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchH
Q 020094          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGDDEE  295 (331)
Q Consensus       220 ~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~----~vl~~LA~~L~~lG~~eE  295 (331)
                      ..|++++|++.++++++++|+++.++..++.++++ .|++++|+.++++++...|.+.    ..+..++.++...|++++
T Consensus       126 ~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         126 EAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            37889999999999999999999888888888888 9999999999999999877432    346678999999999999


Q ss_pred             HHHhhhh
Q 020094          296 EEQDNEE  302 (331)
Q Consensus       296 a~~~~~~  302 (331)
                      +...+++
T Consensus       205 A~~~~~~  211 (355)
T cd05804         205 ALAIYDT  211 (355)
T ss_pred             HHHHHHH
Confidence            9988873

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.84  E-value=7e-08  Score=96.69  Aligned_cols=117  Identities=21%  Similarity=0.192  Sum_probs=105.1

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd  258 (331)
                      +-.++...+.++.|+..|+++.+.+|+   +...+|.++.. .++..+|++++.++|+.+|++...+...+.++.. .++
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~-~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~  249 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLL-MNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKK  249 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHh-cCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCC
Confidence            456777778999999999999998876   55557777655 7889999999999999999999999999999998 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      ++.|+.+.++|+.+.|++...|+.|+.+|..+|++++|-..+
T Consensus       250 ~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL  291 (395)
T PF09295_consen  250 YELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL  291 (395)
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            999999999999999999999999999999999999996544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=7e-08  Score=92.69  Aligned_cols=114  Identities=19%  Similarity=0.166  Sum_probs=93.7

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--DASRAES  264 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G--d~deA~~  264 (331)
                      .+.++-..-.+.-|+.||+|.+-|..||.++.. .+++..|...|++|+++.|+|++++..|+.+++...|  ...+|..
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~-~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~  214 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMA-LGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARA  214 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHH-hcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            346778888888888899998888888888544 8888888889999999999888888888888877443  3568888


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          265 YFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       265 yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|++++++||.|..+++.||..++..|++.+|....+
T Consensus       215 ll~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq  251 (287)
T COG4235         215 LLRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQ  251 (287)
T ss_pred             HHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            8889999999888888888888888888888875443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.82  E-value=4.9e-08  Score=93.22  Aligned_cols=99  Identities=13%  Similarity=0.062  Sum_probs=87.5

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN----ILSLYA  249 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~----al~~yA  249 (331)
                      ....+++.++...|++++|+..|+++++++|+++.++..+|.++++ .|++++|+.++++++...|.++.    .+..++
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la  193 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA  193 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence            3456788899999999999999999999999999999999999877 99999999999999999885443    344677


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP  274 (331)
                      .++.. .|++++|+.+|++++...|
T Consensus       194 ~~~~~-~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         194 LFYLE-RGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHHHH-CCCHHHHHHHHHHHhcccc
Confidence            87777 9999999999999988777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=7.4e-08  Score=92.52  Aligned_cols=107  Identities=21%  Similarity=0.117  Sum_probs=95.7

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLY  248 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g--d~ekAee~~erALeldP~d~~al~~y  248 (331)
                      ++...-.-++.+|...+++..|...|.+++++.|+|++++..||.+++...+  .-.++...+++|+.+||+|..+++.|
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            4444455689999999999999999999999999999999999999887444  35889999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094          249 ADLIWQAHKDASRAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~~  278 (331)
                      +..+++ +|+|.+|...++..++..|.+..
T Consensus       234 A~~afe-~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         234 AFAAFE-QGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHH-cccHHHHHHHHHHHHhcCCCCCc
Confidence            999999 99999999999999999995543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.81  E-value=8.1e-08  Score=99.26  Aligned_cols=123  Identities=9%  Similarity=-0.011  Sum_probs=101.2

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCC
Q 020094          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-------GDFAKAEELCGRAILA--NPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~-------gd~ekAee~~erALel--dP~d~~al~~yA~ll~~~~Gd  258 (331)
                      ++++|+.+|++|++++|+++.++..++.++....       .+..++.+..++++.+  +|.++.++..++..... .|+
T Consensus       357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g~  435 (517)
T PRK10153        357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALV-KGK  435 (517)
T ss_pred             HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cCC
Confidence            3789999999999999999999998876543321       2356777888887774  88889998778777776 899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhcccCCCCCCCC
Q 020094          259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSPP  315 (331)
Q Consensus       259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~~~~~~~~~~  315 (331)
                      +++|..+|++|++++| +...|..+|.++...|+.++|...++   .+..+.+..|.
T Consensus       436 ~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~---~A~~L~P~~pt  488 (517)
T PRK10153        436 TDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS---TAFNLRPGENT  488 (517)
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhcCCCCch
Confidence            9999999999999999 68899999999999999999998887   55555555444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.79  E-value=1.6e-07  Score=89.34  Aligned_cols=107  Identities=9%  Similarity=0.121  Sum_probs=92.9

Q ss_pred             CCcccccchHHHH-HhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHH
Q 020094          171 GGSGFSGSNNNYS-NNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGN  243 (331)
Q Consensus       171 g~~~~~~N~A~~y-~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~~  243 (331)
                      +...-.++.|..+ ...++|++|+..|++.+...|++   +.+++.+|.+++. .|++++|+.+|+++++..|+   .++
T Consensus       140 ~~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~d  218 (263)
T PRK10803        140 GDANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAAD  218 (263)
T ss_pred             CCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhH
Confidence            3445567777776 55789999999999999999998   5799999999776 99999999999999999887   578


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYV  279 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~v  279 (331)
                      +++.++.++.. .|++++|+.+|+++++..|+...+
T Consensus       219 Al~klg~~~~~-~g~~~~A~~~~~~vi~~yP~s~~a  253 (263)
T PRK10803        219 AMFKVGVIMQD-KGDTAKAKAVYQQVIKKYPGTDGA  253 (263)
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHH
Confidence            88778887777 999999999999999999988754

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=4.5e-08  Score=97.20  Aligned_cols=116  Identities=17%  Similarity=0.143  Sum_probs=100.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCC----C-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPG----N-----------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL  245 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~----n-----------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al  245 (331)
                      ..|++.++|..|..-|++|+..-+.    +           ...+.|+|.++. +.++|.+|++++.++|+++|+|+-++
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELDPNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcCCCchhHH
Confidence            4677889999999999999886431    1           123677887744 48999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          246 SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      +..+.++.. .++|+.|+..|++|++++|+|..+...+..+-.+..++++.++
T Consensus       295 yRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kek  346 (397)
T KOG0543|consen  295 YRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEK  346 (397)
T ss_pred             HHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998 9999999999999999999999999999999888887776653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.76  E-value=2e-07  Score=92.63  Aligned_cols=126  Identities=14%  Similarity=0.081  Sum_probs=110.6

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      ++.....||..+...|+.++|...+++++. .|.++.+...|+.+   ..++++++++.+++.++..|+|+..+..+|.+
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl  337 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL  337 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            445567799999999999999999999999 55577776667766   25899999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      +.. .+++++|..+|+++++..|++. .+..++.++...|+.+++...+++.
T Consensus       338 ~~~-~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        338 LMK-HGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             HHH-CCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999 9999999999999999999654 4568999999999999998888733

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.75  E-value=9.7e-08  Score=83.77  Aligned_cols=99  Identities=20%  Similarity=0.234  Sum_probs=82.1

Q ss_pred             HHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020094          196 YEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAV  270 (331)
Q Consensus       196 yerAL~~nP--~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL  270 (331)
                      +.+++..++  ....+++++|.++.. .|++++|+.+|++++.++|+.   ..++..++.++.. .|++++|+.+|++++
T Consensus        22 ~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al   99 (172)
T PRK02603         22 ILKILPINKKAKEAFVYYRDGMSAQA-DGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQAL   99 (172)
T ss_pred             HHHHcccccHhhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence            344444443  456677888888655 899999999999999988763   4688889998888 999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCchHH
Q 020094          271 KSAPDDCYVLASYAKFLWDAGDDEEE  296 (331)
Q Consensus       271 ~ldP~d~~vl~~LA~~L~~lG~~eEa  296 (331)
                      ...|++...+..++.++...++...+
T Consensus       100 ~~~p~~~~~~~~lg~~~~~~g~~~~a  125 (172)
T PRK02603        100 ELNPKQPSALNNIAVIYHKRGEKAEE  125 (172)
T ss_pred             HhCcccHHHHHHHHHHHHHcCChHhH
Confidence            99999999999999999998874433

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.75  E-value=4.1e-07  Score=77.74  Aligned_cols=114  Identities=17%  Similarity=0.200  Sum_probs=98.2

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCC
Q 020094          185 NNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKD  258 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd  258 (331)
                      ..++..++...+++++..+|+.   ..+.+.+|.+++. .|++++|+..|++++...|++   ..++..++.+++. .|+
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~-~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~  100 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYE-QGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQ  100 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCC
Confidence            4678899999999999999999   5566778888776 999999999999999988765   4567778988888 999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +++|+..++. +.-.+..+.++..+|.+|...|+.++|...++
T Consensus       101 ~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~  142 (145)
T PF09976_consen  101 YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQ  142 (145)
T ss_pred             HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999966 44455677899999999999999999998886

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.75  E-value=2.6e-08  Score=73.62  Aligned_cols=61  Identities=25%  Similarity=0.347  Sum_probs=30.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS  282 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~  282 (331)
                      .|++++|+++|++++..+|++..++..++.+++. .|++++|+.++++++..+|++..++.-
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            4455555555555555555555555555555554 555555555555555555544444433

...

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.73  E-value=2.3e-08  Score=77.70  Aligned_cols=79  Identities=19%  Similarity=0.256  Sum_probs=70.6

Q ss_pred             cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          221 RGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~--d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      .+++++|+.+|+++++.+|.  +..+++.+|.+++. .|++++|+.++++ ++.++.+..+++.+|.++.++++++||.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            68999999999999999995  56677778999999 9999999999999 88889888999999999999999999998


Q ss_pred             hhh
Q 020094          299 DNE  301 (331)
Q Consensus       299 ~~~  301 (331)
                      .++
T Consensus        80 ~l~   82 (84)
T PF12895_consen   80 ALE   82 (84)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            776

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.72  E-value=4.1e-08  Score=72.51  Aligned_cols=67  Identities=22%  Similarity=0.261  Sum_probs=60.3

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       183 y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      +...|++++|+.+|++++..+|++..++..||.++.. .|++++|++++++++..+|+++.++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3567899999999999999999999999999999776 999999999999999999999988866654

...

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.72  E-value=2.5e-07  Score=100.31  Aligned_cols=123  Identities=15%  Similarity=0.061  Sum_probs=107.1

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ...+|..|...+++++|+++|+++++.+|+++.++..++.++.. .+++++|++.+++++..+|.+...+ .++.++.. 
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~-~~q~~eAl~~l~~l~~~dp~~~~~l-~layL~~~-  181 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQAD-AGRGGVVLKQATELAERDPTVQNYM-TLSYLNRA-  181 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhh-cCCHHHHHHHHHHhcccCcchHHHH-HHHHHHHh-
Confidence            34457799999999999999999999999999999988777555 8999999999999999999977663 55555544 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++..+|+..|+++++.+|++..++..+..++.+.|--.-|.+.++
T Consensus       182 ~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~  227 (822)
T PRK14574        182 TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK  227 (822)
T ss_pred             cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            6788789999999999999999999999999999999888877665

>PRK15331 chaperone protein SicA; Provisional

Probab=98.71  E-value=1.8e-07  Score=83.42  Aligned_cols=113  Identities=13%  Similarity=0.039  Sum_probs=96.9

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      .+-+|.-++..|++++|+.+|+-+...+|.|++.+.+||.++.. .++|++|+..|..|..++++||...+..|.+++. 
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~-  117 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL-  117 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-
Confidence            45677888899999999999999999999999999999988655 9999999999999999999999999777777777 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                      .|+.+.|+.+|+.++. .|.+..+.......+..+.
T Consensus       118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~  152 (165)
T PRK15331        118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALK  152 (165)
T ss_pred             hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHH
Confidence            9999999999999999 5777766655555554333

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.70  E-value=1.1e-07  Score=71.23  Aligned_cols=58  Identities=24%  Similarity=0.316  Sum_probs=29.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYV  279 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~v  279 (331)
                      .+++++|+++++++++++|+++..|..+|.+++. .|++++|...|+++++.+|++..+
T Consensus         8 ~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    8 QEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             CCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHH
Confidence            4555555555555555555555555445554444 555555555555555555544443

>TIGR00540 hemY_coli hemY protein

Probab=98.69  E-value=4.9e-07  Score=89.99  Aligned_cols=123  Identities=15%  Similarity=0.076  Sum_probs=108.5

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-NILSLYADLIWQA  255 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~-~al~~yA~ll~~~  255 (331)
                      ..-|......|+++.|++.+.++.+..|+....+...|.+... +|++++|.+++.++.+..|++. .+...++.++.. 
T Consensus        88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~-~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~-  165 (409)
T TIGR00540        88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQ-RGDEARANQHLEEAAELAGNDNILVEIARTRILLA-  165 (409)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-
Confidence            3445666778999999999999999999887777777787655 8999999999999999999886 566667888888 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|++++|+..++++++..|+++.++..++.++...|+++++.+.++
T Consensus       166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~  211 (409)
T TIGR00540       166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID  211 (409)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999999987776

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.69  E-value=1.8e-08  Score=98.27  Aligned_cols=127  Identities=9%  Similarity=-0.004  Sum_probs=95.2

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      --+..+.|+++..++++++|.++|+.+++++|.|.+++..+|.-++. .++.+-|..||+|+++..-.++..+.+++.++
T Consensus       290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~~~PE~AlryYRRiLqmG~~speLf~NigLCC  368 (478)
T KOG1129|consen  290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-DNNPEMALRYYRRILQMGAQSPELFCNIGLCC  368 (478)
T ss_pred             hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-CCChHHHHHHHHHHHHhcCCChHHHhhHHHHH
Confidence            34577889999999999999999999999999999888777755555 78888888888888888888888888887777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP---~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +. .+++|-++..|++|+...-   .-.++|+|++.+....|++.-|..+++
T Consensus       369 ~y-aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfr  419 (478)
T KOG1129|consen  369 LY-AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFR  419 (478)
T ss_pred             Hh-hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHH
Confidence            76 6677777777777666532   224566666666666665555554443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.69  E-value=1.3e-07  Score=70.77  Aligned_cols=70  Identities=23%  Similarity=0.220  Sum_probs=64.3

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA  249 (331)
                      +...|...+++++|++++++++..+|+++.++..+|.++.. .|++.+|.+.|+++++.+|+++.+....+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a   70 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRA   70 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHH
Confidence            35788999999999999999999999999999999999877 99999999999999999999998875443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.66  E-value=2.1e-07  Score=101.16  Aligned_cols=117  Identities=13%  Similarity=0.101  Sum_probs=97.6

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------------  237 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel--------------  237 (331)
                      +...+..+|.||.+++++++|...|+++|+++|+|+.++++||.++.+ . ++++|++++.+||+.              
T Consensus       115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae-~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W  192 (906)
T PRK14720        115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE-E-DKEKAITYLKKAIYRFIKKKQYVGIEEIW  192 (906)
T ss_pred             hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-h-hHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence            334567899999999999999999999999999999999999999877 5 999999999988865              


Q ss_pred             ------CCCCHHHHHHHH-------------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          238 ------NPSDGNILSLYA-------------------DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       238 ------dP~d~~al~~yA-------------------~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                            +|++.+.+..+-                   +.+|...+++++++.+++++++.+|.|..++..++.+|...
T Consensus       193 ~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k  270 (906)
T PRK14720        193 SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK  270 (906)
T ss_pred             HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence                  455555532211                   13344478899999999999999999999999999999943

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.66  E-value=1.9e-07  Score=96.28  Aligned_cols=128  Identities=22%  Similarity=0.243  Sum_probs=102.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-----PSDG  242 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~--------nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld-----P~d~  242 (331)
                      .-++|.+|...++|.+|+.+|++|+.+        +|.-+.++.+||.+++. .|+|++|+.+|++|+++-     ...+
T Consensus       244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~-~GKf~EA~~~~e~Al~I~~~~~~~~~~  322 (508)
T KOG1840|consen  244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK-QGKFAEAEEYCERALEIYEKLLGASHP  322 (508)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHHHHHHhhccChH
Confidence            336999999999999999999999987        45556778999999765 999999999999999773     2233


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----C---CCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094          243 ---NILSLYADLIWQAHKDASRAESYFDQAVKSA-----P---DDCYVLASYAKFLWDAGDDEEEEQDNEESQH  305 (331)
Q Consensus       243 ---~al~~yA~ll~~~~Gd~deA~~yfekAL~ld-----P---~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~  305 (331)
                         ..+.+++.++.. ++++++|+.+|++++++-     +   .-+.++.++|.+|...|+++||...+++...
T Consensus       323 ~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~  395 (508)
T KOG1840|consen  323 EVAAQLSELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ  395 (508)
T ss_pred             HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence               334445555555 999999999999999882     2   3356899999999999999999987774333

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.64  E-value=7e-08  Score=101.32  Aligned_cols=116  Identities=16%  Similarity=0.106  Sum_probs=109.2

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020094          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE  263 (331)
Q Consensus       184 ~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~  263 (331)
                      .+.++|+++..+++..+++||-....|+++|.+... ..+++.|.++|.+++.++|++..+|++++-.+.. .++..+|.
T Consensus       496 ~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ra~  573 (777)
T KOG1128|consen  496 LSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKKRAF  573 (777)
T ss_pred             ccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhHHHH
Confidence            446899999999999999999999999999988555 9999999999999999999999999999999998 99999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          264 SYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       264 ~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..+++|++.+-.+-.+|.|+..+..+.|++++|.+.+.
T Consensus       574 ~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~  611 (777)
T KOG1128|consen  574 RKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH  611 (777)
T ss_pred             HHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence            99999999998999999999999999999999988775

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.63  E-value=1.1e-06  Score=87.38  Aligned_cols=124  Identities=12%  Similarity=0.108  Sum_probs=100.9

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNY-ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nL-A~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd  258 (331)
                      |......|+++.|..+|+++.+.+|++......+ +.+. ...|++++|+..++++++.+|+++.++..++.++.. .|+
T Consensus       125 A~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~-l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~-~gd  202 (398)
T PRK10747        125 AEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ-LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIR-TGA  202 (398)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HHh
Confidence            5555889999999999999999999987555433 5554 459999999999999999999999999888888877 999


Q ss_pred             HHHHHHHHHHHHHh------------------------------------------CCCCHHHHHHHHHHHHHcCCchHH
Q 020094          259 ASRAESYFDQAVKS------------------------------------------APDDCYVLASYAKFLWDAGDDEEE  296 (331)
Q Consensus       259 ~deA~~yfekAL~l------------------------------------------dP~d~~vl~~LA~~L~~lG~~eEa  296 (331)
                      +++|++.+.++.+.                                          .|+++.++..++..+...|+.++|
T Consensus       203 w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A  282 (398)
T PRK10747        203 WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTA  282 (398)
T ss_pred             HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence            99999666555532                                          334677788889999999999999


Q ss_pred             HHhhhhhhc
Q 020094          297 EQDNEESQH  305 (331)
Q Consensus       297 ~~~~~~~~~  305 (331)
                      .+..++.++
T Consensus       283 ~~~L~~~l~  291 (398)
T PRK10747        283 QQIILDGLK  291 (398)
T ss_pred             HHHHHHHHh
Confidence            988885555

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.62  E-value=5.3e-07  Score=95.24  Aligned_cols=122  Identities=15%  Similarity=0.148  Sum_probs=112.5

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      -.|+.+...+..++|..|+.++-.++|..+..++..|..+ ++.|+.++|.+.|..|+.+||+++.++..+|.++.+ .|
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~-~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G  732 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLL-EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LG  732 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHH-HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hC
Confidence            4567777888889999999999999999999999998885 459999999999999999999999999999999998 99


Q ss_pred             CHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          258 DASRAES--YFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       258 d~deA~~--yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +..-|..  .+..|+++||.++++|+++|.++.+.|+.++|-.++.
T Consensus       733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~  778 (799)
T KOG4162|consen  733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQ  778 (799)
T ss_pred             CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence            8777777  9999999999999999999999999999999988776

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=2.4e-07  Score=95.16  Aligned_cols=120  Identities=12%  Similarity=0.119  Sum_probs=92.8

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-------CCHHHHHHHHHH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-------SDGNILSLYADL  251 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP-------~d~~al~~yA~l  251 (331)
                      ++.-|-..++++.|..+|.+|+.+.|.+|.++.-+|.+.+. .+.|.+|..+|+.+++.-+       .....+.++|-+
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~-~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~  464 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYT-YEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA  464 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeeh-HhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence            56667778888999999999999999999888888877665 6778888888888873221       234456677666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      +.. .+.+++|+.+|++||.+.|.+..++..+|.+|..+|+.+.|..-+
T Consensus       465 ~Rk-l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~f  512 (611)
T KOG1173|consen  465 YRK-LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHF  512 (611)
T ss_pred             HHH-HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHH
Confidence            666 888888888888888888888888888888888888888776433

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.61  E-value=2.6e-07  Score=88.88  Aligned_cols=80  Identities=15%  Similarity=0.103  Sum_probs=76.9

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      .++|.+|+..|.+||+++|+|+.+|.+.|.++.. .|.++.|++-.+.||.+||.....|..++.+|..+|++++|..-+
T Consensus        94 ~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ay  172 (304)
T KOG0553|consen   94 NKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAY  172 (304)
T ss_pred             hhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHH
Confidence            7899999999999999999999999999999999 999999999999999999999999999999999999999998665


Q ss_pred             h
Q 020094          301 E  301 (331)
Q Consensus       301 ~  301 (331)
                      +
T Consensus       173 k  173 (304)
T KOG0553|consen  173 K  173 (304)
T ss_pred             H
Confidence            4

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.59  E-value=2.2e-07  Score=100.00  Aligned_cols=130  Identities=16%  Similarity=0.091  Sum_probs=71.4

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n-~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA  249 (331)
                      +|-+++.+-|.+.+..++|-.|+.||+++|.++|.. ++.....|.+++. .++.+.|+..|.||+++||++..++..++
T Consensus       162 ~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~k-l~~~~~a~~a~~ralqLdp~~v~alv~L~  240 (1018)
T KOG2002|consen  162 DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWK-LGMSEKALLAFERALQLDPTCVSALVALG  240 (1018)
T ss_pred             cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHh-ccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence            455566666666666666666666666666666653 2233334444333 55555566666666666665555555554


Q ss_pred             HHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          250 DLIWQA--HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       250 ~ll~~~--~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+-...  ...+..|+..+.+|...+|.|+.++-.|+..++-.|+++.+....+
T Consensus       241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~  294 (1018)
T KOG2002|consen  241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAE  294 (1018)
T ss_pred             HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHH
Confidence            443331  1224455555555555555555555555555555555555554444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.57  E-value=8.8e-07  Score=91.36  Aligned_cols=125  Identities=22%  Similarity=0.233  Sum_probs=106.6

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--------  238 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~--------nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld--------  238 (331)
                      ...|++..+..+++++.|+.+|++++++        ++.-+.+..+||.+++. .|+|++|+++|++||++.        
T Consensus       327 ~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~-~gk~~ea~~~~k~ai~~~~~~~~~~~  405 (508)
T KOG1840|consen  327 QLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLK-MGKYKEAEELYKKAIQILRELLGKKD  405 (508)
T ss_pred             HHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhcccCcC
Confidence            3678999999999999999999999986        33457788999999766 999999999999999875        


Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS-------APDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       239 P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l-------dP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +....++..++..+.+ .+++.+|...|.+++.+       .|+-.+.+.+|+.+|..+|+++.|.+..+
T Consensus       406 ~~~~~~l~~la~~~~~-~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~  474 (508)
T KOG1840|consen  406 YGVGKPLNQLAEAYEE-LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEE  474 (508)
T ss_pred             hhhhHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            3345667789999988 99999999999999887       44557899999999999999999986443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.56  E-value=1e-06  Score=83.53  Aligned_cols=112  Identities=18%  Similarity=0.250  Sum_probs=88.5

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCC----------------------------------CCHHHHHHHHHHHHHHcCC
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANP----------------------------------GNALLLGNYARFLKEVRGD  223 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP----------------------------------~n~~~l~nLA~~L~~~~gd  223 (331)
                      -.|.++...+.+++|+++|+..|+.||                                  .|+++|..++.++.. .++
T Consensus        91 lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~-~~~  169 (289)
T KOG3060|consen   91 LKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLS-EGD  169 (289)
T ss_pred             HHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh-HhH
Confidence            466777777777777777777777665                                  556667778877554 899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHK---DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       224 ~ekAee~~erALeldP~d~~al~~yA~ll~~~~G---d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                      |++|..||++.|-.+|.++.++..|+.++|- +|   ++.-|.+||.+|++++|.+...++.+..+-+.+-
T Consensus       170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt-~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~la  239 (289)
T KOG3060|consen  170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYT-QGGAENLELARKYYERALKLNPKNLRALFGIYLCGSALA  239 (289)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999887 54   5678899999999999988888877765555443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.56  E-value=6.4e-07  Score=80.94  Aligned_cols=97  Identities=21%  Similarity=0.151  Sum_probs=75.9

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cC-------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 020094          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEV--RG-------DFAKAEELCGRAILANPSDGNILSLYADLIWQAH---  256 (331)
Q Consensus       189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~--~g-------d~ekAee~~erALeldP~d~~al~~yA~ll~~~~---  256 (331)
                      ++.|.+.++..+..||.+++++++.|.+|.+.  ..       -+++|+.-|+.||.++|+..+++..++..+.. +   
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhh
Confidence            58899999999999999999999999887663  12       25779999999999999999999999988876 3   


Q ss_pred             --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          257 --------KDASRAESYFDQAVKSAPDDCYVLASYAKF  286 (331)
Q Consensus       257 --------Gd~deA~~yfekAL~ldP~d~~vl~~LA~~  286 (331)
                              ..|++|..||++|++.+|.|..++-.|..+
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~  123 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA  123 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence                    237899999999999999998776666554

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=98.55  E-value=3.6e-07  Score=81.44  Aligned_cols=97  Identities=12%  Similarity=-0.051  Sum_probs=88.8

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094          203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS  282 (331)
Q Consensus       203 nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~  282 (331)
                      .++.-+.++.+|.-++. .|++++|+.+|+-+...||.|+.+|..+|.++.. .++|++|+..|..|..++++|+...+.
T Consensus        33 s~~~le~iY~~Ay~~y~-~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~  110 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYN-QGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFF  110 (165)
T ss_pred             CHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccch
Confidence            44455667888877776 9999999999999999999999999999988888 999999999999999999999999999


Q ss_pred             HHHHHHHcCCchHHHHhhh
Q 020094          283 YAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       283 LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|.|+..+++.++|...++
T Consensus       111 agqC~l~l~~~~~A~~~f~  129 (165)
T PRK15331        111 TGQCQLLMRKAAKARQCFE  129 (165)
T ss_pred             HHHHHHHhCCHHHHHHHHH
Confidence            9999999999999998776

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=1.2e-06  Score=83.01  Aligned_cols=115  Identities=16%  Similarity=0.145  Sum_probs=102.6

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES  264 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~  264 (331)
                      ..+...-|..|+++.-...|+........|.++. ..+++++|+++|++.++-||.|..++.....++- .+|+--+|++
T Consensus        64 d~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lE-a~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilk-a~GK~l~aIk  141 (289)
T KOG3060|consen   64 DTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLE-ATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILK-AQGKNLEAIK  141 (289)
T ss_pred             HhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHH-HhhchhhHHHHHHHHhccCcchhHHHHHHHHHHH-HcCCcHHHHH
Confidence            3477899999999999999999999999998865 4999999999999999999999988865544444 4899999999


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          265 YFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       265 yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+...++..+.|.++|..++.+|...++++.|.=++|
T Consensus       142 ~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClE  178 (289)
T KOG3060|consen  142 ELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLE  178 (289)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence            9999999999999999999999999999999987777

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.54  E-value=6.1e-07  Score=90.72  Aligned_cols=131  Identities=23%  Similarity=0.152  Sum_probs=76.7

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      .|.+..+...++.++|+++|-++-.+--++.+++.++|.++. ...+..+|+++|-++..+=|+||.++..++.++-+ .
T Consensus       528 fniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye-~led~aqaie~~~q~~slip~dp~ilskl~dlydq-e  605 (840)
T KOG2003|consen  528 FNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE-LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ-E  605 (840)
T ss_pred             HHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc-c
Confidence            344445555555555555555555555555666666666633 36666667777777777777777776665554433 3


Q ss_pred             CC----------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          257 KD----------------------------------ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       257 Gd----------------------------------~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      |+                                  .++|+.||++|--+.|+.......++.|+.+.|++..|-..++ 
T Consensus       606 gdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk-  684 (840)
T KOG2003|consen  606 GDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYK-  684 (840)
T ss_pred             cchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHH-
Confidence            33                                  2355566666666666666666666666666666666666665 


Q ss_pred             hhcccCCCCCCCC
Q 020094          303 SQHQTDHSHTSPP  315 (331)
Q Consensus       303 ~~~~~~~~~~~~~  315 (331)
                           +++..||.
T Consensus       685 -----~~hrkfpe  692 (840)
T KOG2003|consen  685 -----DIHRKFPE  692 (840)
T ss_pred             -----HHHHhCcc
Confidence                 45555554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=5.8e-07  Score=92.44  Aligned_cols=124  Identities=16%  Similarity=0.088  Sum_probs=109.6

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd  258 (331)
                      .|-+|...+++.+|..||.++-.+||....+|..||..+.. .+.-++|+.+|.+|-++-|.--.-...++.-+. .+++
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~-e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~-~t~n  395 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAG-EGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYM-RTNN  395 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhh-cchHHHHHHHHHHHHHhccCCcchHHHHHHHHH-Hhcc
Confidence            56788889999999999999999999999999999988665 899999999999999999975544433444444 4999


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094          259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQ  304 (331)
Q Consensus       259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~  304 (331)
                      ++.|..+|.+|+.++|.|+.++-.+|.+....+.+.+|.+.++...
T Consensus       396 ~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l  441 (611)
T KOG1173|consen  396 LKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKAL  441 (611)
T ss_pred             HHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888444

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.53  E-value=3.2e-07  Score=92.70  Aligned_cols=128  Identities=16%  Similarity=0.142  Sum_probs=112.1

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      =|+.-..|-+...+.+|++++|.+.|+++|.-+....++++++|... +.+|++++|+.+|.+.-.+--+++.|++.++.
T Consensus       488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~-e~~~~ldeald~f~klh~il~nn~evl~qian  566 (840)
T KOG2003|consen  488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA-EALGNLDEALDCFLKLHAILLNNAEVLVQIAN  566 (840)
T ss_pred             cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH-HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            34444556666667789999999999999999999999999999774 45999999999998887777788999999998


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      ++-. +.+..+|+++|.++..+-|+|+.++..|+.+|-+.|+..+|..+.
T Consensus       567 iye~-led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~  615 (840)
T KOG2003|consen  567 IYEL-LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCH  615 (840)
T ss_pred             HHHH-hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence            8777 999999999999999999999999999999999999999887544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=6.8e-07  Score=90.46  Aligned_cols=69  Identities=17%  Similarity=0.072  Sum_probs=57.7

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       202 ~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~a---l~~yA~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                      .+|+++.+++|+|.+|+. .|+|++|+.+|++||+++|+++.+   |+++|.++.. +|++++|+.+|++|+++
T Consensus        70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence            578888888888888776 888888888888888888888854   7788888877 88888888888888887

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=7.1e-07  Score=91.22  Aligned_cols=103  Identities=15%  Similarity=0.143  Sum_probs=95.4

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (331)
Q Consensus       183 y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA  262 (331)
                      .+..++|+.|+.+|.++|.++|.|...+.|-..++.. +++|.+|.+-..+.++++|+.+..|...+..+.- .|+|++|
T Consensus        12 a~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~-~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~eA   89 (539)
T KOG0548|consen   12 AFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYAS-LGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEEA   89 (539)
T ss_pred             hcccccHHHHHHHHHHHHccCCCccchhcchHHHHHH-HhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHHH
Confidence            4566999999999999999999998888887766544 8999999999999999999999999999999998 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          263 ESYFDQAVKSAPDDCYVLASYAKFL  287 (331)
Q Consensus       263 ~~yfekAL~ldP~d~~vl~~LA~~L  287 (331)
                      +..|.+.|+.+|+|...+..++.++
T Consensus        90 ~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   90 ILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999999998888

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.49  E-value=4.5e-06  Score=70.71  Aligned_cols=95  Identities=14%  Similarity=0.112  Sum_probs=82.0

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYA  249 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~~al~~yA  249 (331)
                      .++.|..+...|+.++|+.+|+++++.....   ..++.++|..+.. .|++++|+..+++++...|+   +..+...++
T Consensus         4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            4578889999999999999999999975444   5678889988665 99999999999999999888   888888889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Q 020094          250 DLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                      .+++. .|+.++|+..+-.++.-
T Consensus        83 l~L~~-~gr~~eAl~~~l~~la~  104 (120)
T PF12688_consen   83 LALYN-LGRPKEALEWLLEALAE  104 (120)
T ss_pred             HHHHH-CCCHHHHHHHHHHHHHH
Confidence            98998 99999999999888873

>PRK11906 transcriptional regulator; Provisional

Probab=98.48  E-value=2.1e-06  Score=87.15  Aligned_cols=111  Identities=8%  Similarity=0.035  Sum_probs=93.1

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf  266 (331)
                      .+..+|.++-++|++++|.|+.++..+|.++.. .++++.|+..|++|+.++|+.+.+|+.+++++.. .|+.++|++.+
T Consensus       318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i  395 (458)
T PRK11906        318 LAAQKALELLDYVSDITTVDGKILAIMGLITGL-SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI  395 (458)
T ss_pred             HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            356889999999999999999999999998877 8889999999999999999999999999999998 99999999999


Q ss_pred             HHHHHhCC-CCHHHHHHHHH-HHHHcCCchHHHHhh
Q 020094          267 DQAVKSAP-DDCYVLASYAK-FLWDAGDDEEEEQDN  300 (331)
Q Consensus       267 ekAL~ldP-~d~~vl~~LA~-~L~~lG~~eEa~~~~  300 (331)
                      ++|++++| .-......+.. .|. ..-.+++.+.+
T Consensus       396 ~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~~~~  430 (458)
T PRK11906        396 DKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNIKLY  430 (458)
T ss_pred             HHHhccCchhhHHHHHHHHHHHHc-CCchhhhHHHH
Confidence            99999999 44444555554 333 33444555444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.48  E-value=2.9e-06  Score=91.61  Aligned_cols=131  Identities=17%  Similarity=0.108  Sum_probs=107.3

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD---FAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd---~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      ....+.|+.+.+.-+.|+..|++++++||.+..++..||.+... ..+   +.++...+.+|...+|+||.++..++..+
T Consensus       202 rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~-~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~f  280 (1018)
T KOG2002|consen  202 RIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLN-FNDSDSYKKGVQLLQRAYKENNENPVALNHLANHF  280 (1018)
T ss_pred             cchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHH
Confidence            34456788899999999999999999999999999999977443 443   78899999999999999999998888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCchHHHHhhhhhhcccC
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLWDAGDDEEEEQDNEESQHQTD  308 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d---~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~~~  308 (331)
                      |. .|+|..+..++..|++..-..   .+.+|.+|..|-..|++++|.+-+.++.+..+
T Consensus       281 yf-K~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~  338 (1018)
T KOG2002|consen  281 YF-KKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN  338 (1018)
T ss_pred             hh-cccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence            87 888888888888888776433   34578888888888888888887776666443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.47  E-value=3.1e-06  Score=80.58  Aligned_cols=95  Identities=18%  Similarity=0.134  Sum_probs=81.9

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 020094          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYV  279 (331)
Q Consensus       206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~---d~~v  279 (331)
                      +....+..|..+....++|++|+..|++.++..|++   +.+++.+|.+++. .|++++|+.+|+++++..|+   ..++
T Consensus       141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA  219 (263)
T PRK10803        141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA  219 (263)
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence            344555555554444799999999999999999998   5788889999998 99999999999999999886   5789


Q ss_pred             HHHHHHHHHHcCCchHHHHhhh
Q 020094          280 LASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       280 l~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++.+|.++...|+.++|.+.++
T Consensus       220 l~klg~~~~~~g~~~~A~~~~~  241 (263)
T PRK10803        220 MFKVGVIMQDKGDTAKAKAVYQ  241 (263)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999887

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.47  E-value=3e-06  Score=71.83  Aligned_cols=93  Identities=20%  Similarity=0.121  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYVL  280 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~---d~~vl  280 (331)
                      |.+++++|.++.. .|+.++|+.+|++|+......   ..++..++..+.. .|++++|+..+++++...|+   +..+.
T Consensus         1 ~~~~~~~A~a~d~-~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~   78 (120)
T PF12688_consen    1 PRALYELAWAHDS-LGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALR   78 (120)
T ss_pred             CchHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence            3567889999655 999999999999999987655   4677789998998 99999999999999999898   88899


Q ss_pred             HHHHHHHHHcCCchHHHHhhh
Q 020094          281 ASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       281 ~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..++.++...|+.+|+..++-
T Consensus        79 ~f~Al~L~~~gr~~eAl~~~l   99 (120)
T PF12688_consen   79 VFLALALYNLGRPKEALEWLL   99 (120)
T ss_pred             HHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999986653

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.45  E-value=1.6e-06  Score=74.12  Aligned_cols=92  Identities=17%  Similarity=0.189  Sum_probs=78.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      ...+|..+...|++++|+..|++++...|+.   +.+...+|.++.. .+++++|+..++. +.-.+-.+.++...|.++
T Consensus        51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~  128 (145)
T PF09976_consen   51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQYDEALATLQQ-IPDEAFKALAAELLGDIY  128 (145)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence            4568899999999999999999999988765   4567788988765 9999999999966 445566778888888888


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 020094          253 WQAHKDASRAESYFDQAV  270 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL  270 (331)
                      .. .|++++|+..|++||
T Consensus       129 ~~-~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  129 LA-QGDYDEARAAYQKAL  145 (145)
T ss_pred             HH-CCCHHHHHHHHHHhC
Confidence            88 999999999999985

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.43  E-value=1.3e-06  Score=83.32  Aligned_cols=122  Identities=17%  Similarity=0.253  Sum_probs=102.7

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      .|.+|..+.++.+.|..+|.+|++..+-+..+|..+|.+-+...+|.+.|..+|+++++.-|.+..+|..|..++.. .+
T Consensus         6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~   84 (280)
T PF05843_consen    6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LN   84 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hC
Confidence            46678888888999999999999777778999999998866656777889999999999999999999999999998 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCchHHHHhh
Q 020094          258 DASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~---~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      +.+.|..+|++++..-|.+.   .+|..+..+..+.|+.+...+..
T Consensus        85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~  130 (280)
T PF05843_consen   85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE  130 (280)
T ss_dssp             -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            99999999999999988544   79999999999999877666544

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.42  E-value=4e-06  Score=89.91  Aligned_cols=125  Identities=18%  Similarity=0.178  Sum_probs=105.6

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      -..-+|.+|...|+.+++..++-.|.-++|.+.+.|..++..... ++++.+|.-||.|||+++|.+-...+..+.++.+
T Consensus       175 ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~-~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~  253 (895)
T KOG2076|consen  175 AYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ-LGNINQARYCYSRAIQANPSNWELIYERSSLYQK  253 (895)
T ss_pred             hHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999998655 9999999999999999999999888899998887


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHcCCchHHHHhhh
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCY-----VLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~-----vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       +|+..+|...|.+++.++|....     .-...+..+...++.+-|.+.++
T Consensus       254 -~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le  304 (895)
T KOG2076|consen  254 -TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE  304 (895)
T ss_pred             -hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             99999999999999999992221     22344556666666666665555

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.38  E-value=5.4e-06  Score=84.15  Aligned_cols=125  Identities=15%  Similarity=0.099  Sum_probs=106.0

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      +|.-+..-.++++...++..+|.+.+++++.++|+.+....+||.++.. .|++++|+.++.+.+..+|+|+..|..++.
T Consensus       338 ~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~-~g~~~eai~~L~~~~~~~p~dp~~w~~LAq  416 (484)
T COG4783         338 DNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLK-GGKPQEAIRILNRYLFNDPEDPNGWDLLAQ  416 (484)
T ss_pred             CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh-cCChHHHHHHHHHHhhcCCCCchHHHHHHH
Confidence            6777777788999999999999999999999999999999999999876 999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHH
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      .+-+ +|+..+|...+-.++.++-  +...+....+.-..+.+-...+.
T Consensus       417 ay~~-~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR  464 (484)
T COG4783         417 AYAE-LGNRAEALLARAEGYALAGRLEQAIIFLMRASQQVKLGFPDWAR  464 (484)
T ss_pred             HHHH-hCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCcHHHHH
Confidence            8888 9999999888888888766  44445555555555555555443

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.34  E-value=2.5e-06  Score=90.27  Aligned_cols=97  Identities=14%  Similarity=0.158  Sum_probs=87.7

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE--LCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee--~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      +..+...+++++|+++|..++.+||+++.....+|.++.+ .|+..-|+.  .+..|+++||.|+.+|+.+|.++.. .|
T Consensus       691 G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~G  768 (799)
T KOG4162|consen  691 GLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-LG  768 (799)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cc
Confidence            4677778999999999999999999999999999999766 888777777  9999999999999999888887777 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHH
Q 020094          258 DASRAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~  278 (331)
                      +.++|..+|..|+++++.++.
T Consensus       769 d~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  769 DSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             chHHHHHHHHHHHhhccCCCc
Confidence            999999999999999987763

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.34  E-value=1.7e-06  Score=90.24  Aligned_cols=108  Identities=15%  Similarity=0.083  Sum_probs=66.4

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (331)
Q Consensus       186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y  265 (331)
                      .++|.+.+...+.+|...|.+++.+...|..|+. .|+.++|..+++.++..|+....+|-.+|.+... .++|++|+++
T Consensus        20 ~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~-lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eaiKc   97 (700)
T KOG1156|consen   20 TKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNC-LGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAIKC   97 (700)
T ss_pred             HHHHHhHHHHHHHHHHhCCccchhHHhccchhhc-ccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHHHH
Confidence            3456666666666666666666666666655554 6666666666666666666666666555444333 6666666666


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCchH
Q 020094          266 FDQAVKSAPDDCYVLASYAKFLWDAGDDEE  295 (331)
Q Consensus       266 fekAL~ldP~d~~vl~~LA~~L~~lG~~eE  295 (331)
                      |+.|++++|+|-.+|+.++.+..++++++-
T Consensus        98 y~nAl~~~~dN~qilrDlslLQ~QmRd~~~  127 (700)
T KOG1156|consen   98 YRNALKIEKDNLQILRDLSLLQIQMRDYEG  127 (700)
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHHhhhh
Confidence            666666666666666666666666555443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=4.1e-06  Score=84.01  Aligned_cols=129  Identities=16%  Similarity=0.140  Sum_probs=108.3

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-------------------------------
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV-------------------------------  220 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~-------------------------------  220 (331)
                      |--+..-+|++|+..|++.+|+..|+++.-+||.+....--||.++...                               
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l  310 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLL  310 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhh
Confidence            3334667899999999999999999999999999887766666554331                               


Q ss_pred             --cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          221 --RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       221 --~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                        .++|..|+-+.+++|+.+|++..++.+.+.++.. .++.++|+-.|+.|+.+.|.+.++|..|..+|...+.+.||..
T Consensus       311 ~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~  389 (564)
T KOG1174|consen  311 YDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANA  389 (564)
T ss_pred             hhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHH
Confidence              3467778888899999999999999888888887 9999999999999999999999999999999999999988875


Q ss_pred             hhh
Q 020094          299 DNE  301 (331)
Q Consensus       299 ~~~  301 (331)
                      ...
T Consensus       390 ~An  392 (564)
T KOG1174|consen  390 LAN  392 (564)
T ss_pred             HHH
Confidence            544

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.34  E-value=3.4e-06  Score=84.02  Aligned_cols=98  Identities=12%  Similarity=0.093  Sum_probs=87.0

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..|+|.||.+.++|.+|+.++.++|+.+|+|..+++.-|.++.. .++|+.|+..|++|++++|+|..+...+..+-...
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~  338 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI  338 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence            67999999999999999999999999999999999999999766 99999999999999999999999998887776663


Q ss_pred             cCCHHHHHHHHHHHHHhCC
Q 020094          256 HKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP  274 (331)
                      ....++..+.|.+++..-+
T Consensus       339 ~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  339 REYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             HHHHHHHHHHHHHHhhccc
Confidence            4445566788888888765

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.33  E-value=5.1e-06  Score=90.58  Aligned_cols=127  Identities=11%  Similarity=0.031  Sum_probs=103.2

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH-----------------HHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEEL-----------------CGRA  234 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~-----------------~erA  234 (331)
                      +..-...+...|...+++++|++.++.+++.+|+...+++.+|.+++. .+++.+|.-.                 +-..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q-~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~  108 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLS-RRPLNDSNLLNLIDSFSQNLKWAIVEHICDK  108 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHh-hcchhhhhhhhhhhhcccccchhHHHHHHHH
Confidence            334455677888899999999999999999999999999999986544 6666554433                 3333


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          235 ILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       235 LeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +...+++..+++.+|.+|-. +|+.++|...|+++++++|+|+.++-++|..|... +.++|..-.+
T Consensus       109 i~~~~~~k~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~  173 (906)
T PRK14720        109 ILLYGENKLALRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLK  173 (906)
T ss_pred             HHhhhhhhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence            33344445999999887777 99999999999999999999999999999999999 9988875443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=98.32  E-value=1.9e-06  Score=84.93  Aligned_cols=113  Identities=19%  Similarity=0.101  Sum_probs=95.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d  260 (331)
                      .-|+++|.|++|+.||.+++.++|.|+-.+.|-|.+++. +..|..|+.-|..||.+|--...+|...+..-.. .|...
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~  182 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNM  182 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHH
Confidence            457888999999999999999999999999999988655 9999999999999999999888888777777776 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094          261 RAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQD  299 (331)
Q Consensus       261 eA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~  299 (331)
                      ||.+-++.+|++.|++.+..-.++.    .....|++..
T Consensus       183 EAKkD~E~vL~LEP~~~ELkK~~a~----i~Sl~E~~I~  217 (536)
T KOG4648|consen  183 EAKKDCETVLALEPKNIELKKSLAR----INSLRERKIA  217 (536)
T ss_pred             HHHHhHHHHHhhCcccHHHHHHHHH----hcchHhhhHH
Confidence            9999999999999997766554444    3445555433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.31  E-value=3.5e-06  Score=88.85  Aligned_cols=130  Identities=12%  Similarity=0.037  Sum_probs=112.2

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------------------------HHHcCCHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL---------------------------KEVRGDFAK  226 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L---------------------------~~~~gd~ek  226 (331)
                      .+..+...||...|+..+|..+..+-++ +|.++.+|..+|.++                           ....++|.+
T Consensus       425 emw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~  503 (777)
T KOG1128|consen  425 EMWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSE  503 (777)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHH
Confidence            3567888999999999999999999998 777777776665442                           111468999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094          227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQH  305 (331)
Q Consensus       227 Aee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~  305 (331)
                      +.+++++.++++|-....|+.++-+.++ .+++..|..+|.+++.++|++...|-|++.+|.+.++..+|-..++|-++
T Consensus       504 ~~~hle~sl~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK  581 (777)
T KOG1128|consen  504 ADKHLERSLEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK  581 (777)
T ss_pred             HHHHHHHHhhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence            9999999999999999999999998888 99999999999999999999999999999999999999999876664443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.28  E-value=2.9e-06  Score=83.16  Aligned_cols=127  Identities=9%  Similarity=-0.031  Sum_probs=102.6

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +..-..-++++|.++.+-+.|+..|.+.+...|.+.-.+...|.++.. .++++.|.++|+++++++|.|..+..-.+..
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea-m~~~~~a~~lYk~vlk~~~~nvEaiAcia~~  333 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA-MEQQEDALQLYKLVLKLHPINVEAIACIAVG  333 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH-HHhHHHHHHHHHHHHhcCCccceeeeeeeec
Confidence            333344466677777777777777777777778887778888888554 8899999999999999999999998888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      ++. -++.+-|+.||++.++..-.+++.+.|+|.|..-.++++-.--.+
T Consensus       334 yfY-~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf  381 (478)
T KOG1129|consen  334 YFY-DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSF  381 (478)
T ss_pred             ccc-CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHH
Confidence            888 899999999999999999999999999999988888776654433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=1.8e-06  Score=86.38  Aligned_cols=118  Identities=17%  Similarity=0.099  Sum_probs=96.2

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHH
Q 020094          182 YSNNNHGSSSTDAYYEKMIEANPGNALLL------------GNYARFLKEVRGDFAKAEELCGRAILANPSDG----NIL  245 (331)
Q Consensus       182 ~y~s~gd~ekA~e~yerAL~~nP~n~~~l------------~nLA~~L~~~~gd~ekAee~~erALeldP~d~----~al  245 (331)
                      +++...+.++|+..|+++|+++|+....-            ..-|.-++. .|+|.+|.++|..||.+||++.    ..|
T Consensus       212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY  290 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLY  290 (486)
T ss_pred             ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHHHH
Confidence            45556788999999999999999875542            233444454 7899999999999999999744    445


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          246 SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+.+.+... .|+..+|+.-.+.|+++||.-...+...|.++..+++++++-.+++
T Consensus       291 ~nra~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~  345 (486)
T KOG0550|consen  291 GNRALVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYE  345 (486)
T ss_pred             HHhHhhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            566677777 8999999999999999999999999999999999999999976665

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.28  E-value=1.2e-05  Score=78.69  Aligned_cols=123  Identities=14%  Similarity=0.082  Sum_probs=104.6

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN-----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n-----~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      -.+...|....++++|++.-++...+.+.+     +.++.-||..+. ...+.++|.+.+.+|++.||+...+-..++.+
T Consensus       145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~-~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v  223 (389)
T COG2956         145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQAL-ASSDVDRARELLKKALQADKKCVRASIILGRV  223 (389)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence            457788999999999999999999998875     334455555533 36789999999999999999999999889999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDD-CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d-~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ... .|+|+.|++.++++++.||+- .++...|..+|..+|+.++....+.
T Consensus       224 ~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~  273 (389)
T COG2956         224 ELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR  273 (389)
T ss_pred             HHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            888 999999999999999999944 6899999999999999988875554

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.27  E-value=2.6e-05  Score=73.22  Aligned_cols=125  Identities=16%  Similarity=0.068  Sum_probs=97.8

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLY  248 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l---~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~y  248 (331)
                      -.+..|.-+...+++++|++.|++++...|..+.+.   +.+|.+++. .++|++|+.++++.++++|+++   ++++..
T Consensus        34 ~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~-~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~  112 (243)
T PRK10866         34 EIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVLYMR  112 (243)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCcCCCchHHHHHHH
Confidence            355678888889999999999999999999987765   788888776 9999999999999999999764   556666


Q ss_pred             HHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCc
Q 020094          249 ADLIWQAHK---------------D---ASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGDD  293 (331)
Q Consensus       249 A~ll~~~~G---------------d---~deA~~yfekAL~ldP~d~~vl-----------------~~LA~~L~~lG~~  293 (331)
                      |...+. .+               |   ..+|+..|++.++.-|+..++-                 +.+|.+|.+.|.+
T Consensus       113 g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y  191 (243)
T PRK10866        113 GLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAY  191 (243)
T ss_pred             HHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCch
Confidence            655322 21               1   3578899999999999776532                 3457778888887


Q ss_pred             hHHHHhhh
Q 020094          294 EEEEQDNE  301 (331)
Q Consensus       294 eEa~~~~~  301 (331)
                      .-|..-++
T Consensus       192 ~AA~~r~~  199 (243)
T PRK10866        192 VAVVNRVE  199 (243)
T ss_pred             HHHHHHHH
Confidence            66665555

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.26  E-value=6.3e-06  Score=79.35  Aligned_cols=117  Identities=15%  Similarity=0.058  Sum_probs=94.7

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g--d~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      ...+|..+++.+.|...++++.+.+.+...+...-|++... .|  .+.+|..+|+...+..+..+.+++..+.+... +
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~-~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~  214 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLA-TGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-L  214 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHH-HTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-C
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH-hCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-h
Confidence            55788999999999999999988887766555555555333 34  59999999999888888899999888888888 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      |++++|+..+++|++.+|++++++.|++.+...+|+..++.
T Consensus       215 ~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~  255 (290)
T PF04733_consen  215 GHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA  255 (290)
T ss_dssp             T-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred             CCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence            99999999999999999999999999999999999985443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.25  E-value=1.5e-06  Score=66.09  Aligned_cols=67  Identities=22%  Similarity=0.346  Sum_probs=49.7

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN----PS---DGNILSLYADLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       204 P~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld----P~---d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                      |+.+.++.++|.++.. .|++++|+.+|++|+++.    ++   -+.++.++|.++.. .|++++|+++|++++++
T Consensus         2 ~~~a~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    2 PDTANAYNNLARVYRE-LGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence            3445677888888665 888888888888888651    12   25567777787777 89999999999988876

...

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=3.8e-06  Score=84.07  Aligned_cols=122  Identities=12%  Similarity=0.062  Sum_probs=106.7

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------HH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN------------IL  245 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~------------al  245 (331)
                      --+.|+-..++++.|...--..+++++.+.+++..-+.+++. ..+.++|+.+|+++|.++|+...            +|
T Consensus       174 lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy-~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~  252 (486)
T KOG0550|consen  174 LKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYY-NDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVK  252 (486)
T ss_pred             hhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhccccccc-ccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHH
Confidence            346788888999999999999999999999999988888777 89999999999999999998543            44


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD----CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d----~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..-+.-.+. .|++.+|.++|..||.++|++    ...|.+.+.+..++|+..|+..+|+
T Consensus       253 k~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~  311 (486)
T KOG0550|consen  253 KERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCN  311 (486)
T ss_pred             HhhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhh
Confidence            445566677 899999999999999999955    4578999999999999999999987

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.22  E-value=1.4e-05  Score=83.85  Aligned_cols=126  Identities=16%  Similarity=0.101  Sum_probs=115.0

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ..-+-++.+....++.++|+.+++++|+..|+...+|..+|+++.. .++.+.|.+.|..-++.-|+....|..++.+--
T Consensus       652 Rv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~-~~~ie~aR~aY~~G~k~cP~~ipLWllLakleE  730 (913)
T KOG0495|consen  652 RVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQ-MENIEMAREAYLQGTKKCPNSIPLWLLLAKLEE  730 (913)
T ss_pred             hhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHH-HHHHHHHHHHHHhccccCCCCchHHHHHHHHHH
Confidence            3445677888888999999999999999999999999999999654 999999999999999999999999988887766


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      . .|+.-+|...++++.-.+|++...|.....+..+.|+.++|+..+.
T Consensus       731 k-~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lma  777 (913)
T KOG0495|consen  731 K-DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMA  777 (913)
T ss_pred             H-hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHH
Confidence            6 8999999999999999999999999999999999999999986554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=2e-05  Score=72.90  Aligned_cols=108  Identities=19%  Similarity=0.220  Sum_probs=89.5

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          183 SNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       183 y~s~gd~ekA~e~yerAL~~nP~n~-----~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      ++..|+|++|..-|+.||..-|..+     ..+.|-|.++. +++..+.|+.-|-+||+++|.+-.++...|.+|-. +.
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~i-Kl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~e  182 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALI-KLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-ME  182 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHH-HhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-hh
Confidence            4467999999999999999988753     34556666644 48899999999999999999999999877887777 89


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      .|++|+.-|++.++++|....+...++++--...+
T Consensus       183 k~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e  217 (271)
T KOG4234|consen  183 KYEEALEDYKKILESDPSRREAREAIARLPPKINE  217 (271)
T ss_pred             hHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence            99999999999999999888877777666554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.16  E-value=2e-05  Score=79.27  Aligned_cols=95  Identities=17%  Similarity=0.109  Sum_probs=86.1

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      ..+-...-+|++|...++..+|+..+.+++..+|.+..++...|.++.. .++++.|++++++|+++.|++...|+.++.
T Consensus       198 ~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~-k~~~~lAL~iAk~av~lsP~~f~~W~~La~  276 (395)
T PF09295_consen  198 RDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS-KKKYELALEIAKKAVELSPSEFETWYQLAE  276 (395)
T ss_pred             cCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            3344566689999999999999999999999999999999999999766 999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHH
Q 020094          251 LIWQAHKDASRAESYFD  267 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfe  267 (331)
                      +|.. .|++++|+..+.
T Consensus       277 ~Yi~-~~d~e~ALlaLN  292 (395)
T PF09295_consen  277 CYIQ-LGDFENALLALN  292 (395)
T ss_pred             HHHh-cCCHHHHHHHHh
Confidence            9998 999999997655

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.14  E-value=1.6e-05  Score=83.02  Aligned_cols=127  Identities=11%  Similarity=-0.032  Sum_probs=113.9

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      +..+-.+...|+-++|..+.+.++..++...--|..||.+. +...+|++|+++|+.|+.++|+|-.+|..++.+-.+ +
T Consensus        45 AmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~-R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-m  122 (700)
T KOG1156|consen   45 AMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQ-RSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-M  122 (700)
T ss_pred             HhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHH-hhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-H
Confidence            33445566778999999999999999999999999999884 558999999999999999999999999999888887 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQH  305 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~  305 (331)
                      ++++-....-.+.+++.|.+...|..+|+.+.-.|+...|...+++.-+
T Consensus       123 Rd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~  171 (700)
T KOG1156|consen  123 RDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEK  171 (700)
T ss_pred             HhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999887764433

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.13  E-value=1.8e-05  Score=82.03  Aligned_cols=86  Identities=12%  Similarity=0.011  Sum_probs=73.1

Q ss_pred             cHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094          189 SSSTDAYYEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (331)
Q Consensus       189 ~ekA~e~yerAL~~--nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf  266 (331)
                      .+++.+..++++.+  +|.++.++..+|..... .|++++|..+|++|+.++| +..+|..++.++.. .|++++|+.+|
T Consensus       400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~~  476 (517)
T PRK10153        400 LAALSTELDNIVALPELNVLPRIYEILAVQALV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADAY  476 (517)
T ss_pred             HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence            35666667776664  78888888888877554 8999999999999999999 57888888888888 99999999999


Q ss_pred             HHHHHhCCCCH
Q 020094          267 DQAVKSAPDDC  277 (331)
Q Consensus       267 ekAL~ldP~d~  277 (331)
                      ++|+.++|.++
T Consensus       477 ~~A~~L~P~~p  487 (517)
T PRK10153        477 STAFNLRPGEN  487 (517)
T ss_pred             HHHHhcCCCCc
Confidence            99999999665

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.13  E-value=5.6e-05  Score=72.05  Aligned_cols=103  Identities=13%  Similarity=0.103  Sum_probs=93.0

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYA  249 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~---d~~al~~yA  249 (331)
                      .+|.|.-+...++|..|+..|+.-|...|+.   +++++.||..++. +|+|+.|..+|.++++..|+   -++.++.++
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            6899999999999999999999999999985   6788999999876 99999999999999999886   458898999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl  280 (331)
                      .++.. .|+.++|...|++.++.-|....+.
T Consensus       223 ~~~~~-l~~~d~A~atl~qv~k~YP~t~aA~  252 (262)
T COG1729         223 VSLGR-LGNTDEACATLQQVIKRYPGTDAAK  252 (262)
T ss_pred             HHHHH-hcCHHHHHHHHHHHHHHCCCCHHHH
Confidence            99998 9999999999999999999766543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.13  E-value=9.1e-06  Score=88.13  Aligned_cols=125  Identities=16%  Similarity=0.049  Sum_probs=106.2

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------------------------HcCC
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE-----------------------------------VRGD  223 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~-----------------------------------~~gd  223 (331)
                      ++++|....+...|..||++|.++|+.+..++...+..+.+                                   ..++
T Consensus       498 LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n  577 (1238)
T KOG1127|consen  498 LGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHN  577 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccc
Confidence            66788888888999999999999999998876655433211                                   1346


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       224 ~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      +.+|+..|+.|+..+|+|...|..++..|.. .|++.-|++.|.||..++|.+-++.+..+....++|+++++-..++.+
T Consensus       578 ~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~i  656 (1238)
T KOG1127|consen  578 LHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLI  656 (1238)
T ss_pred             hhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            7789999999999999999999999998888 999999999999999999999999999999999999999997666543


Q ss_pred             h
Q 020094          304 Q  304 (331)
Q Consensus       304 ~  304 (331)
                      .
T Consensus       657 i  657 (1238)
T KOG1127|consen  657 I  657 (1238)
T ss_pred             H
Confidence            3

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=98.12  E-value=5.8e-05  Score=75.20  Aligned_cols=127  Identities=19%  Similarity=0.139  Sum_probs=109.8

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      ++-...-||.-+...++++.|.+..+++++..-+.- +...|+.+   +.+++.+-++..++.++..|+++..+..++.+
T Consensus       262 ~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l---~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L  337 (400)
T COG3071         262 DPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL---RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRL  337 (400)
T ss_pred             ChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc---CCCCchHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            455677789999999999999999999999876655 33333322   47899999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQ  304 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~  304 (331)
                      ++. .+.+.+|..+|+.|++..| +.+.+..+|.++.++|+.++++...+|.+
T Consensus       338 ~~k-~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         338 ALK-NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHH-hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            998 9999999999999999988 66778999999999999999998888655

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.11  E-value=6.7e-05  Score=68.89  Aligned_cols=125  Identities=18%  Similarity=0.117  Sum_probs=109.1

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLI  252 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~-~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~--d~~al~~yA~ll  252 (331)
                      .+.+|..+-..|++.+|...|++++. +..+++..+..+|++++. .+++..|...+++..+.+|.  .++-...++..+
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            34577888899999999999999987 477899999999999887 99999999999999999986  455566789988


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      .- .|++++|+..|+.++...| .+.....++..+.+.|+..|+..++.+.
T Consensus       171 aa-~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         171 AA-QGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             Hh-cCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            87 9999999999999999988 6777788999999999999988766543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.11  E-value=9.7e-06  Score=82.25  Aligned_cols=70  Identities=16%  Similarity=-0.038  Sum_probs=63.4

Q ss_pred             CCCCCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020094          168 GGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILAN  238 (331)
Q Consensus       168 ~~~g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~---l~nLA~~L~~~~gd~ekAee~~erALeld  238 (331)
                      .+..+.....|++..|+..++|++|+.+|+++|+++|+++.+   ++|+|.++.. +|++++|+++|++||++.
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALels  142 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRDY  142 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhc
Confidence            344667778999999999999999999999999999999965   9999999776 999999999999999983

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=2.4e-05  Score=78.60  Aligned_cols=119  Identities=15%  Similarity=0.092  Sum_probs=98.7

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d  260 (331)
                      ..++..++++.|+.+-+++|+.+|.+..++..-|.++.. .++.++|...|+.|+.+.|-+-++|.-+-..|.- .+.+.
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA-~~~~k  385 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA-QKRFK  385 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh-hchHH
Confidence            345556789999999999999999999999999988765 9999999999999999999999999766665555 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHH-HHHHHcC-CchHHHHhhh
Q 020094          261 RAESYFDQAVKSAPDDCYVLASYA-KFLWDAG-DDEEEEQDNE  301 (331)
Q Consensus       261 eA~~yfekAL~ldP~d~~vl~~LA-~~L~~lG-~~eEa~~~~~  301 (331)
                      ||......++..-|.++..+.-+| .++.-.- --|.|.+.++
T Consensus       386 EA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e  428 (564)
T KOG1174|consen  386 EANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE  428 (564)
T ss_pred             HHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence            999999999999999999887775 4444322 3455566665

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.09  E-value=3.4e-05  Score=78.68  Aligned_cols=122  Identities=21%  Similarity=0.319  Sum_probs=107.8

Q ss_pred             cchHHHHHhC-CCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          177 GSNNNYSNNN-HGSSSTDAYYEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       177 ~N~A~~y~s~-gd~ekA~e~yerAL~~nP~----n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      -|||-+-.-. .+.+.+.+.|+.+|.+-|+    .+.+|..||.+.-. +.++..|.+++..||-..|.+-... .|..+
T Consensus       369 inYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIR-q~~l~~ARkiLG~AIG~cPK~KlFk-~YIel  446 (677)
T KOG1915|consen  369 INYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIR-QLNLTGARKILGNAIGKCPKDKLFK-GYIEL  446 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH-HcccHHHHHHHHHHhccCCchhHHH-HHHHH
Confidence            4666444333 6889999999999999997    47789999999655 8999999999999999999998877 78787


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      -.. .+++|+...+|++-|+..|.+|++|..+|.+-..+|+.+.+-..++
T Consensus       447 Elq-L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife  495 (677)
T KOG1915|consen  447 ELQ-LREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE  495 (677)
T ss_pred             HHH-HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            777 9999999999999999999999999999999999999999988877

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.07  E-value=6.2e-05  Score=78.07  Aligned_cols=124  Identities=20%  Similarity=0.125  Sum_probs=104.3

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      .+-+|+.|...|++++|+++++++|...|..++++...|.++.. .|++.+|.++++.|..+|+.|-++-...+-.+++ 
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR-  274 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLR-  274 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-
Confidence            45569999999999999999999999999999999999999876 9999999999999999999999988666665665 


Q ss_pred             cCCHHHHHHHHHHHHHhC--C-CC------HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSA--P-DD------CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ld--P-~d------~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|++++|+..+..-...+  | .|      .......|.+|.+.|++-.|-+-+.
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~  329 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH  329 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            999999999887665554  2 22      2234566899999999988876554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.07  E-value=0.00024  Score=57.64  Aligned_cols=118  Identities=25%  Similarity=0.285  Sum_probs=77.9

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 020094          182 YSNNNHGSSSTDAYYEKMIEANP---GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHK  257 (331)
Q Consensus       182 ~y~s~gd~ekA~e~yerAL~~nP---~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-d~~al~~yA~ll~~~~G  257 (331)
                      ++...++++.|..+|++++..+|   ........++..+.. .++++.|+..+.+++...+. ...++..++..+.. .+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  216 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEA-LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG  216 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHH-hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence            56677777777777777777666   234444444444333 66777777777777777777 56666666666665 77


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++++|..++.+++...|.....+..++..+...++.+++....+
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE  260 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence            77777777777777777766666666666665555555554443

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.07  E-value=6.6e-05  Score=68.05  Aligned_cols=125  Identities=16%  Similarity=0.173  Sum_probs=93.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYA  249 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA  249 (331)
                      .+..|..+...|++.+|+..|++++...|..   +.+.+.+|.+++. .+++.+|+..|++.++..|+++   .+++..+
T Consensus         8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~-~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g   86 (203)
T PF13525_consen    8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYK-QGDYEEAIAAYERFIKLYPNSPKADYALYMLG   86 (203)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence            3467888899999999999999999998875   5678888988776 9999999999999999999865   5676777


Q ss_pred             HHHHHH----------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCchHHHHhhh
Q 020094          250 DLIWQA----------HKDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       250 ~ll~~~----------~Gd~deA~~yfekAL~ldP~d~~vl-----------------~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ...+..          .....+|+..|++.++.-|++.++-                 +.+|.+|.+.+.+.-|..-++
T Consensus        87 ~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~  165 (203)
T PF13525_consen   87 LSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ  165 (203)
T ss_dssp             HHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred             HHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            766542          2234689999999999999876542                 445777888887777765554

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.05  E-value=7.7e-05  Score=78.47  Aligned_cols=112  Identities=22%  Similarity=0.195  Sum_probs=57.4

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf  266 (331)
                      |-.+.-+.++++++..-|.-..+|..||.-.+. .||...|.-++.+|++.+|++-.+|+..-.+..+ ..++++|..+|
T Consensus       564 gt~Esl~Allqkav~~~pkae~lwlM~ake~w~-agdv~~ar~il~~af~~~pnseeiwlaavKle~e-n~e~eraR~ll  641 (913)
T KOG0495|consen  564 GTRESLEALLQKAVEQCPKAEILWLMYAKEKWK-AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFE-NDELERARDLL  641 (913)
T ss_pred             CcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHh-cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhc-cccHHHHHHHH
Confidence            344444444444444444444445555544443 4555555555555555555555555333333333 44555555555


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          267 DQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       267 ekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+|....| ...+|+..+.+.+.+++.+||...||
T Consensus       642 akar~~sg-TeRv~mKs~~~er~ld~~eeA~rllE  675 (913)
T KOG0495|consen  642 AKARSISG-TERVWMKSANLERYLDNVEEALRLLE  675 (913)
T ss_pred             HHHhccCC-cchhhHHHhHHHHHhhhHHHHHHHHH
Confidence            55555444 34455555666666666666665555

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.03  E-value=0.0001  Score=64.44  Aligned_cols=104  Identities=15%  Similarity=0.118  Sum_probs=84.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYA  249 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA  249 (331)
                      .++-|.-....++|++|++.|+.+....|..   ..+...++.+++. .+++++|+..+++-|+++|+++   .+++..|
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~g   91 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRG   91 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence            4556777788899999999999999998865   4567778888776 9999999999999999999865   5666677


Q ss_pred             HHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 020094          250 DLIWQAHKD---------------ASRAESYFDQAVKSAPDDCYVLA  281 (331)
Q Consensus       250 ~ll~~~~Gd---------------~deA~~yfekAL~ldP~d~~vl~  281 (331)
                      ...+. +..               ..+|...|++.|..-|++.++-.
T Consensus        92 L~~~~-~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d  137 (142)
T PF13512_consen   92 LSYYE-QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD  137 (142)
T ss_pred             HHHHH-HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            77776 554               77999999999999998876643

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.02  E-value=8.7e-06  Score=61.80  Aligned_cols=61  Identities=20%  Similarity=0.175  Sum_probs=51.0

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEA---NP----GNALLLGNYARFLKEVRGDFAKAEELCGRAILA  237 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~---nP----~n~~~l~nLA~~L~~~~gd~ekAee~~erALel  237 (331)
                      ..|+|.+|...+++++|+.+|++++.+   .+    ....++.++|.++.. .|++++|++++++|+++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence            468999999999999999999999976   22    235567889988665 99999999999999986

...

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=98.01  E-value=0.00029  Score=57.15  Aligned_cols=125  Identities=21%  Similarity=0.148  Sum_probs=98.3

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR-FLKEVRGDFAKAEELCGRAILANP---SDGNILSLYAD  250 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~-~L~~~~gd~ekAee~~erALeldP---~d~~al~~yA~  250 (331)
                      ...+.+.++...+++..+...+.+++..++.+......+.. ++. ..+++++|..+|.+++..+|   .....+..+..
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  175 (291)
T COG0457          97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALY-ELGDYEEALELYEKALELDPELNELAEALLALGA  175 (291)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhh
Confidence            35566778888888999999999999988887555554454 444 48999999999999988887   34444544555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPD-DCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~-d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+.. .+++++|+..+.+++...+. ....+..++..+...++.+++...+.
T Consensus       176 ~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  226 (291)
T COG0457         176 LLEA-LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYE  226 (291)
T ss_pred             HHHH-hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHH
Confidence            5455 88999999999999999998 68999999999999998888876665

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.96  E-value=0.00014  Score=71.31  Aligned_cols=118  Identities=13%  Similarity=0.095  Sum_probs=91.7

Q ss_pred             ccchHHHHH-------hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHH
Q 020094          176 SGSNNNYSN-------NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-NILSL  247 (331)
Q Consensus       176 ~~N~A~~y~-------s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~-~al~~  247 (331)
                      ..++|.||.       ...++++|+..+.+|++.||++..+-..+|.+... .|+|++|++.++++++.||+.. .++-.
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~  254 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELA-KGDYQKAVEALERVLEQNPEYLSEVLEM  254 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHH
Confidence            345666665       45688999999999999999999999999999655 9999999999999999999754 56655


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHH
Q 020094          248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEE  296 (331)
Q Consensus       248 yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa  296 (331)
                      +..+|.. .|+.++.+..+.++++..+..... ..++.......-.++|
T Consensus       255 L~~~Y~~-lg~~~~~~~fL~~~~~~~~g~~~~-l~l~~lie~~~G~~~A  301 (389)
T COG2956         255 LYECYAQ-LGKPAEGLNFLRRAMETNTGADAE-LMLADLIELQEGIDAA  301 (389)
T ss_pred             HHHHHHH-hCCHHHHHHHHHHHHHccCCccHH-HHHHHHHHHhhChHHH
Confidence            6555555 999999999999999998855444 3444444433333334

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.96  E-value=2.1e-05  Score=74.22  Aligned_cols=86  Identities=20%  Similarity=0.155  Sum_probs=79.3

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES  264 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~  264 (331)
                      ....|..|+.+|.++|.+||..+..+.|-|..+.. .++++.+++-+++|++++||-.-..+.++..+.+ ...|++|+.
T Consensus        22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~eaI~   99 (284)
T KOG4642|consen   22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDEAIK   99 (284)
T ss_pred             chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccHHHH
Confidence            34789999999999999999999999999988655 8999999999999999999999999989888888 999999999


Q ss_pred             HHHHHHHh
Q 020094          265 YFDQAVKS  272 (331)
Q Consensus       265 yfekAL~l  272 (331)
                      .+.+|+.+
T Consensus       100 ~Lqra~sl  107 (284)
T KOG4642|consen  100 VLQRAYSL  107 (284)
T ss_pred             HHHHHHHH
Confidence            99999766

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.96  E-value=4.4e-05  Score=71.53  Aligned_cols=96  Identities=10%  Similarity=0.106  Sum_probs=87.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d  260 (331)
                      .+|.+.|=..-|..-|.+++.++|+-|++++.+|.++.. .++|+.|.+.|...+++||.+-++..+.+..+|. -|++.
T Consensus        73 vlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~  150 (297)
T COG4785          73 VLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYK  150 (297)
T ss_pred             chhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchH
Confidence            356666777889999999999999999999999988766 9999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHhCCCCHH
Q 020094          261 RAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       261 eA~~yfekAL~ldP~d~~  278 (331)
                      .|..-+.+-.+.||+|++
T Consensus       151 LAq~d~~~fYQ~D~~DPf  168 (297)
T COG4785         151 LAQDDLLAFYQDDPNDPF  168 (297)
T ss_pred             hhHHHHHHHHhcCCCChH
Confidence            999999999999999984

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.94  E-value=2.1e-05  Score=54.37  Aligned_cols=39  Identities=26%  Similarity=0.262  Sum_probs=19.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY  248 (331)
Q Consensus       209 ~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~y  248 (331)
                      ++..||.++.. .|++++|+++|+++|+.+|+|+.+|..+
T Consensus         3 ~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence            34444444333 5555555555555555555555555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.93  E-value=2.3e-05  Score=54.19  Aligned_cols=43  Identities=19%  Similarity=0.141  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK  285 (331)
Q Consensus       242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~  285 (331)
                      |.+|..++.++.. .|++++|+++|+++++.+|+|..+|..++.
T Consensus         1 p~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3577889999998 999999999999999999999999999875

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.92  E-value=1e-05  Score=53.60  Aligned_cols=32  Identities=25%  Similarity=0.286  Sum_probs=17.0

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020094          231 CGRAILANPSDGNILSLYADLIWQAHKDASRAE  263 (331)
Q Consensus       231 ~erALeldP~d~~al~~yA~ll~~~~Gd~deA~  263 (331)
                      |++||+++|+|+.+|++||.++.. .|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhc
Confidence            455555555555555555555554 55555553

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.91  E-value=0.00024  Score=73.82  Aligned_cols=127  Identities=22%  Similarity=0.266  Sum_probs=99.6

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHh---------------CCCCHHHH--HHHHHHHHHHcCCHHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEA---------------NPGNALLL--GNYARFLKEVRGDFAKAEELCGRAI  235 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~---------------nP~n~~~l--~nLA~~L~~~~gd~ekAee~~erAL  235 (331)
                      +-...|+-.+|....+..-...++...+..               .|....+|  +.+|+.+.. .|++++|++++++||
T Consensus       143 PslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~-~g~~~~Al~~Id~aI  221 (517)
T PF12569_consen  143 PSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDY-LGDYEKALEYIDKAI  221 (517)
T ss_pred             chHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHH
Confidence            345567777777554444444444443321               11222233  555777554 999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          236 LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       236 eldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +..|..++.+...|.++-. .|++.+|..+++.|-.+|+.|-++-...+..+.+.|+.++|++.+.
T Consensus       222 ~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~  286 (517)
T PF12569_consen  222 EHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS  286 (517)
T ss_pred             hcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999998888 9999999999999999999999999999999999999999998775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=97.91  E-value=0.00013  Score=81.62  Aligned_cols=122  Identities=20%  Similarity=0.231  Sum_probs=113.0

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIWQA  255 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~--d~~al~~yA~ll~~~  255 (331)
                      -+..+|...+.+++|.++|+++++.......+|..||.++.. +++.++|...+.||++.-|.  +..+....|.+.|. 
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~-~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk- 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLR-QNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK- 1612 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhc-ccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-
Confidence            356788899999999999999999999999999999999876 88889999999999999998  88888889999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|+.+++...|+-.+...|.-.++|.-|...-.+.++.+-....+|
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999888888776

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.87  E-value=7.2e-05  Score=72.07  Aligned_cols=105  Identities=20%  Similarity=0.188  Sum_probs=85.6

Q ss_pred             ccccchHHHHHh--C--CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          174 GFSGSNNNYSNN--N--HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       174 ~~~~N~A~~y~s--~--gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA  249 (331)
                      -...++|..|..  .  ..+.+|..+|+++....+.++.+++.+|.+... +|+|++|++.+.+|+..+|+|++++.+++
T Consensus       164 ~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNli  242 (290)
T PF04733_consen  164 SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLI  242 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence            346677765544  2  368999999999888888999999999988655 99999999999999999999999999998


Q ss_pred             HHHHHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 020094          250 DLIWQAHKDA-SRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       250 ~ll~~~~Gd~-deA~~yfekAL~ldP~d~~vl  280 (331)
                      .+... .|+. +.+.+++.++...+|+++.+-
T Consensus       243 v~~~~-~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  243 VCSLH-LGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHHHH-TT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHHHH-hCCChhHHHHHHHHHHHhCCCChHHH
Confidence            88887 8877 778899999999999988764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN03077 Protein ECB2; Provisional

Probab=97.86  E-value=0.00018  Score=77.87  Aligned_cols=119  Identities=13%  Similarity=0.103  Sum_probs=92.1

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      +-..|...|..++|..+|+++....+-  +...+..+..++.+ .|++++|++++++. ...| |+.+|..+...+.. .
T Consensus       595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r-~G~~~eA~~~~~~m-~~~p-d~~~~~aLl~ac~~-~  670 (857)
T PLN03077        595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR-AGKLTEAYNFINKM-PITP-DPAVWGALLNACRI-H  670 (857)
T ss_pred             HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh-CCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHH-c
Confidence            334566677788888888887755433  33456666677655 88888888888775 3556 46677777776666 8


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++.+.|+...+++++++|++...+..++.+|...|+++++.+..+
T Consensus       671 ~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~  715 (857)
T PLN03077        671 RHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRK  715 (857)
T ss_pred             CChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHH
Confidence            999999999999999999999999999999999999999986554

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.84  E-value=0.00048  Score=77.03  Aligned_cols=119  Identities=16%  Similarity=0.091  Sum_probs=64.9

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHc
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~n-P~n~~~l~nLA~~L~~~~gd~ekAee~~erALel--dP~d~~al~~yA~ll~~~~  256 (331)
                      -..|.+.|++++|+++|+++.+.+ +.+...+..+...+.. .|++++|+++|++..+.  .| |...|..+...+.. .
T Consensus       586 I~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k-~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k-~  662 (1060)
T PLN03218        586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQ-KGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGH-A  662 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHh-C
Confidence            334555555555555555555554 2344444444444333 55566666666555554  23 23444444444444 6


Q ss_pred             CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          257 KDASRAESYFDQAVKSAP-DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP-~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |++++|+.+|+++.+..- .+..+|..+...|.+.|+.++|.+.++
T Consensus       663 G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~  708 (1060)
T PLN03218        663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE  708 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            666666666666665432 355566666666666666666665555

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.82  E-value=0.00092  Score=62.76  Aligned_cols=125  Identities=11%  Similarity=0.010  Sum_probs=96.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH--------------cCC---HHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEV--------------RGD---FAKAEELCGRAI  235 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~---~l~nLA~~L~~~--------------~gd---~ekAee~~erAL  235 (331)
                      ..++|..|++.+++++|+.+|++.++.+|+++.   +++.+|......              ..|   ..+|+..|++.|
T Consensus        72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li  151 (243)
T PRK10866         72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV  151 (243)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH
Confidence            368899999999999999999999999998754   456666442110              012   357889999999


Q ss_pred             HhCCCCHHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCchH
Q 020094          236 LANPSDGNILS-----------------LYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLWDAGDDEE  295 (331)
Q Consensus       236 eldP~d~~al~-----------------~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl~~LA~~L~~lG~~eE  295 (331)
                      +..|+...+-.                 ..+.++++ .|.+.-|+.-++.+++.-|+.   .+++..+..+|.++|..++
T Consensus       152 ~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~-~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~  230 (243)
T PRK10866        152 RGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK-RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ  230 (243)
T ss_pred             HHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence            99998553321                 13455666 899999999999999998844   5788899999999999999


Q ss_pred             HHHhhh
Q 020094          296 EEQDNE  301 (331)
Q Consensus       296 a~~~~~  301 (331)
                      +.+..+
T Consensus       231 a~~~~~  236 (243)
T PRK10866        231 ADKVAK  236 (243)
T ss_pred             HHHHHH
Confidence            986543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.82  E-value=0.00016  Score=76.71  Aligned_cols=121  Identities=12%  Similarity=0.080  Sum_probs=83.9

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-------------
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---NP-------------  239 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~n--P~n~~~l~nLA~~L~~~~gd~ekAee~~erALel---dP-------------  239 (331)
                      .+...|.+.|+.++|+++|+++++..  |+ ...+..+..++.. .|+.++|.++|+...+.   .|             
T Consensus       396 ~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~-~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~  473 (697)
T PLN03081        396 ALIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRY-SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG  473 (697)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhc-CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence            46677778888888888888877642  33 2223333333222 45555555555544432   11             


Q ss_pred             ------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          240 ------------------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       240 ------------------~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                                        -+..+|..+...+.. .|+++.|+..++++++++|++...|..+..+|.+.|++++|.+..+
T Consensus       474 r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~  552 (697)
T PLN03081        474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRI-HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE  552 (697)
T ss_pred             hcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence                              145567667676766 8899999999999999999988889999999999999999988776

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.81  E-value=8.1e-05  Score=70.72  Aligned_cols=127  Identities=20%  Similarity=0.171  Sum_probs=90.8

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANP--GN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--S----DGN  243 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP--~n----~~~l~nLA~~L~~~~gd~ekAee~~erALeldP--~----d~~  243 (331)
                      ..-.|..|...+++++|.++|.++....-  ++    ...+...+.++ . ..++++|+++|++|+.+.-  +    -+.
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k-~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~  115 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-K-KGDPDEAIECYEKAIEIYREAGRFSQAAK  115 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-H-HTTHHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-H-hhCHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            44567788889999999999999987642  22    22334444453 3 4599999999999998732  2    245


Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094          244 ILSLYADLIWQAH-KDASRAESYFDQAVKSAP--DD----CYVLASYAKFLWDAGDDEEEEQDNEESQH  305 (331)
Q Consensus       244 al~~yA~ll~~~~-Gd~deA~~yfekAL~ldP--~d----~~vl~~LA~~L~~lG~~eEa~~~~~~~~~  305 (331)
                      ++..+|.++.. . +++++|+.+|++|+++--  +.    ..++..++.++..++++++|.+.+++...
T Consensus       116 ~~~~lA~~ye~-~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  116 CLKELAEIYEE-QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHHHHHHHHCC-TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            66667776666 6 899999999999999833  11    35778999999999999999998874433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.79  E-value=0.00011  Score=72.71  Aligned_cols=99  Identities=16%  Similarity=0.100  Sum_probs=88.3

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      ..++.-+...+++..|+..|-.|++.||++-.+++.-|..+ +..|+-.-|+.-+.+.|++.|++.-+....+.+++. +
T Consensus        42 lElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~y-LAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK-~  119 (504)
T KOG0624|consen   42 LELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVY-LAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK-Q  119 (504)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHH-hhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh-c
Confidence            34566677789999999999999999999999999999884 448999999999999999999999999899999888 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCH
Q 020094          257 KDASRAESYFDQAVKSAPDDC  277 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~  277 (331)
                      |++++|+.-|++.|+.+|.+.
T Consensus       120 Gele~A~~DF~~vl~~~~s~~  140 (504)
T KOG0624|consen  120 GELEQAEADFDQVLQHEPSNG  140 (504)
T ss_pred             ccHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.78  E-value=0.00018  Score=78.37  Aligned_cols=106  Identities=16%  Similarity=0.088  Sum_probs=86.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cC
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HK  257 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~---~G  257 (331)
                      +-...+++|+.|++..+++++.||+|-.++.-+|.+++...++.++|.+.|..|++++|++.-+|--++. +|+.   .-
T Consensus        10 k~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~n-Lye~~~dIl   88 (1238)
T KOG1127|consen   10 KDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGN-LYERYNDIL   88 (1238)
T ss_pred             HHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHH-HHHccchhh
Confidence            3345678999999999999999999999999999999985566999999999999999999999955544 5542   35


Q ss_pred             CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 020094          258 DASRAESYFDQAVKSAPDDC-YVLASYAKFL  287 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~-~vl~~LA~~L  287 (331)
                      +++++-.+|.+++.+.+++. .-+..+...+
T Consensus        89 ~ld~~~~~yq~~~l~le~q~~nk~~~lcKk~  119 (1238)
T KOG1127|consen   89 DLDRAAKCYQRAVLILENQSKNKGEALCKKF  119 (1238)
T ss_pred             hhhHhHHHHHHHHHhhhhhhhhHHHHHHHHH
Confidence            68999999999999988544 3333333333

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=97.77  E-value=0.00022  Score=73.23  Aligned_cols=120  Identities=15%  Similarity=0.021  Sum_probs=95.4

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----------------  240 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-----------------  240 (331)
                      .+-.-..+..+..+.+++-++||+++|+.+.++..||.=   ......+|+++|++|++....                 
T Consensus       173 ~IMq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~  249 (539)
T PF04184_consen  173 EIMQKAWRERNPQARIKAAKEALEINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEA  249 (539)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhh
Confidence            333444556788899999999999999999999877632   134467788888887765321                 


Q ss_pred             --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          241 --------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       241 --------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                              ...+...+|.++++ .|+.+||++.|+..++..|  ++..++++|..+|...+.+.|+++.+.
T Consensus       250 ~~~Rdt~~~~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~  319 (539)
T PF04184_consen  250 WHRRDTNVLVYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA  319 (539)
T ss_pred             hhccccchhhhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence                    14566778999998 9999999999999999888  456799999999999999999987775

The molecular function of this protein is uncertain.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.76  E-value=0.00065  Score=59.39  Aligned_cols=88  Identities=15%  Similarity=0.103  Sum_probs=71.9

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAHKDAS  260 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d----~~al~~yA~ll~~~~Gd~d  260 (331)
                      ..++.+.|++.|.++|.+-|.++.+++|-|+++.. +++.++|+.-+.+|+++.-..    +.++...+.++.. .|+.+
T Consensus        55 E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~g~dd  132 (175)
T KOG4555|consen   55 EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-LGNDD  132 (175)
T ss_pred             hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-hCchH
Confidence            44688999999999999999999999999999655 999999999999999987543    3455556665555 99999


Q ss_pred             HHHHHHHHHHHhCC
Q 020094          261 RAESYFDQAVKSAP  274 (331)
Q Consensus       261 eA~~yfekAL~ldP  274 (331)
                      .|..-|+.|-++..
T Consensus       133 ~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  133 AARADFEAAAQLGS  146 (175)
T ss_pred             HHHHhHHHHHHhCC
Confidence            99999988877644

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.76  E-value=0.0007  Score=61.35  Aligned_cols=121  Identities=17%  Similarity=0.101  Sum_probs=90.6

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH----------cCCHHHHHHHHHHHHHhCCCCH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEV----------RGDFAKAEELCGRAILANPSDG  242 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~---~~l~nLA~~L~~~----------~gd~ekAee~~erALeldP~d~  242 (331)
                      ...+|..++..++++.|+..|++.+...|+++   .+++.+|...+..          .....+|...|+..|...|+..
T Consensus        45 ~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~  124 (203)
T PF13525_consen   45 QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE  124 (203)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence            34688999999999999999999999999875   4566666554332          1224689999999999999966


Q ss_pred             HHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCchHHH
Q 020094          243 NILS-----------------LYADLIWQAHKDASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       243 ~al~-----------------~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~---~vl~~LA~~L~~lG~~eEa~  297 (331)
                      .+-.                 ..|.+++. .|.+..|+..|+.+++.-|+..   +++..++..+.++|..+.++
T Consensus       125 y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  125 YAEEAKKRLAELRNRLAEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            4421                 14566666 8999999999999999999665   57888899999999988554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.76  E-value=0.00021  Score=68.13  Aligned_cols=90  Identities=24%  Similarity=0.238  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH
Q 020094          210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAP---DDCYVLASY  283 (331)
Q Consensus       210 l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP---~d~~vl~~L  283 (331)
                      +++.|.-+++ .|||..|++-|..-|+..|+..   .+++-|+.++|. +|+|++|..+|.++++-.|   .-++.++.+
T Consensus       144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            4445545455 8999999999999999999832   334449999998 9999999999999999988   446899999


Q ss_pred             HHHHHHcCCchHHHHhhh
Q 020094          284 AKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       284 A~~L~~lG~~eEa~~~~~  301 (331)
                      |.++.++++.++|-.-++
T Consensus       222 g~~~~~l~~~d~A~atl~  239 (262)
T COG1729         222 GVSLGRLGNTDEACATLQ  239 (262)
T ss_pred             HHHHHHhcCHHHHHHHHH
Confidence            999999999999987776

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.75  E-value=3e-05  Score=51.37  Aligned_cols=34  Identities=38%  Similarity=0.568  Sum_probs=31.1

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020094          195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE  229 (331)
Q Consensus       195 ~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee  229 (331)
                      +|+++|+++|+|+.++++||.++.. .|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLN-QGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhcC
Confidence            4899999999999999999999876 999999864

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=97.71  E-value=4.6e-05  Score=77.46  Aligned_cols=114  Identities=17%  Similarity=0.080  Sum_probs=99.5

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      .|-|.-++..+.|+.|+..|.+||+++|+++.++.+-+.+ ..+.++|..|+.-+.+||+++|....+++..|..+.. .
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a-~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l   85 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALA-HLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-L   85 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhh-heeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-H
Confidence            3455666677899999999999999999999999888866 4459999999999999999999999999888888887 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      +++.+|+..|++...+.|++.++...+..+-...-+
T Consensus        86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~  121 (476)
T KOG0376|consen   86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE  121 (476)
T ss_pred             HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888776654443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.71  E-value=5.2e-05  Score=74.98  Aligned_cols=86  Identities=16%  Similarity=0.101  Sum_probs=79.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       214 A~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                      |.-++. +|.|++|+.||.++|.++|.|+..+.+.|..|+. ++.|..|+.-...|+++|-...-+|...+.+-..+|+.
T Consensus       104 GN~yFK-QgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~  181 (536)
T KOG4648|consen  104 GNTYFK-QGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN  181 (536)
T ss_pred             hhhhhh-ccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence            445455 9999999999999999999999999999999998 99999999999999999988888899999999999999


Q ss_pred             hHHHHhhh
Q 020094          294 EEEEQDNE  301 (331)
Q Consensus       294 eEa~~~~~  301 (331)
                      +||.++||
T Consensus       182 ~EAKkD~E  189 (536)
T KOG4648|consen  182 MEAKKDCE  189 (536)
T ss_pred             HHHHHhHH
Confidence            99999887

>PLN03077 Protein ECB2; Provisional

Probab=97.68  E-value=0.00062  Score=73.79  Aligned_cols=117  Identities=12%  Similarity=0.013  Sum_probs=95.1

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPSDGNILSLYADLIWQA  255 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel--dP~d~~al~~yA~ll~~~  255 (331)
                      .+-+.|.+.|++++|...|+++    +.|...|+.+...+.. .|+.++|+++|++.++.  .|+...+. .+...+.. 
T Consensus       529 aLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~-~G~~~~A~~lf~~M~~~g~~Pd~~T~~-~ll~a~~~-  601 (857)
T PLN03077        529 ALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVA-HGKGSMAVELFNRMVESGVNPDEVTFI-SLLCACSR-  601 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCcccHH-HHHHHHhh-
Confidence            3557888999999999999886    5577788888877665 99999999999998874  56655544 45555666 


Q ss_pred             cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|++++|..+|+...+..+  -+...|..+..+|.+.|+.+||.+.++
T Consensus       602 ~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~  649 (857)
T PLN03077        602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFIN  649 (857)
T ss_pred             cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            8999999999999985433  366889999999999999999999887

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=97.67  E-value=0.00074  Score=71.59  Aligned_cols=120  Identities=9%  Similarity=-0.009  Sum_probs=87.9

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIWQA  255 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP-~d~~al~~yA~ll~~~  255 (331)
                      .-+...|.+.|++++|..+|+++.   +.|...|+.+...+.. .|++++|+++|++..+..- -|...+..+...+.. 
T Consensus       263 n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~~-~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~-  337 (697)
T PLN03081        263 CALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSR-  337 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Confidence            345677888888888888888763   3466677777777555 8888888888888876432 144555566666666 


Q ss_pred             cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ld-P~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|++++|...+..+++.. +.|..++..+...|.+.|+.++|.+.++
T Consensus       338 ~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~  384 (697)
T PLN03081        338 LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD  384 (697)
T ss_pred             ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence            888888888888888776 3567777788888888888888877776

>PLN03218 maturation of RBCL 1; Provisional

Probab=97.67  E-value=0.0014  Score=73.49  Aligned_cols=122  Identities=11%  Similarity=0.049  Sum_probs=84.8

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIW  253 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~--nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP-~d~~al~~yA~ll~  253 (331)
                      ..+...|.+.|++++|+.+|+++.+.  .|+ ...+..+...+.. .|++++|.++++++++... -|..++..+...+.
T Consensus       618 nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k-~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~  695 (1060)
T PLN03218        618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH-AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACS  695 (1060)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            34555677788888888888888776  343 4455556666554 7888888888888877653 35666666666666


Q ss_pred             HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAP-DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP-~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      . .|++++|+.+|++..+... .+...|..+...|.+.|+.++|.+.++
T Consensus       696 k-~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~  743 (1060)
T PLN03218        696 N-AKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS  743 (1060)
T ss_pred             h-CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            6 7888888888877765422 356677777777778888777776665

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.00049  Score=65.57  Aligned_cols=94  Identities=16%  Similarity=0.210  Sum_probs=78.3

Q ss_pred             hCCCcHHHHHHHHHHHHh--------CCCCHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          185 NNHGSSSTDAYYEKMIEA--------NPGNALL----------LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~--------nP~n~~~----------l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~  246 (331)
                      ..++|.+|...|+.||..        .|..++.          +.||++++. ..++|-++++.+...+..+|.|..+++
T Consensus       190 k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L-~~~e~yevleh~seiL~~~~~nvKA~f  268 (329)
T KOG0545|consen  190 KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLL-KKEEYYEVLEHCSEILRHHPGNVKAYF  268 (329)
T ss_pred             hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHh-hHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            448999999999888763        5666553          678888854 489999999999999999999999999


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl  280 (331)
                      ..|..... .=+.++|..-|.++++++|.-..+.
T Consensus       269 rRakAhaa-~Wn~~eA~~D~~~vL~ldpslasvV  301 (329)
T KOG0545|consen  269 RRAKAHAA-VWNEAEAKADLQKVLELDPSLASVV  301 (329)
T ss_pred             HHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHHH
Confidence            98888776 7778999999999999999555443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.63  E-value=0.0003  Score=66.82  Aligned_cols=123  Identities=21%  Similarity=0.188  Sum_probs=90.3

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----H
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEAN--PGN----ALLLGNYARFLKEVR-GDFAKAEELCGRAILANP--SD----G  242 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~n--P~n----~~~l~nLA~~L~~~~-gd~ekAee~~erALeldP--~d----~  242 (331)
                      ..+.+.+|... +.++|+.+|++++.+.  -++    +..+..+|.++.. . +++++|+++|++|+++--  +.    .
T Consensus        78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~-~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~  155 (282)
T PF14938_consen   78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEE-QLGDYEKAIEYYQKAAELYEQEGSPHSAA  155 (282)
T ss_dssp             HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCC-TT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence            45677788777 9999999999999973  222    4456788888554 6 899999999999998732  11    3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHcCCchHHHHhhh
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD----DC---YVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~----d~---~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++..++.++.. .++|++|+..|++.....-+    ..   ..++..+.++...|+.-.|.+.++
T Consensus       156 ~~~~~~A~l~~~-l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~  220 (282)
T PF14938_consen  156 ECLLKAADLYAR-LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE  220 (282)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            556678888887 99999999999999886331    11   356788889999999888887776

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=97.59  E-value=0.0007  Score=69.36  Aligned_cols=113  Identities=21%  Similarity=0.166  Sum_probs=94.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAHKDASRA  262 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d----~~al~~yA~ll~~~~Gd~deA  262 (331)
                      .+.+.|.++++.+.+..|+.+.+++.-|.++.. .|+.++|+++|++++......    ..+++.+++.+.. +.++++|
T Consensus       247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~-~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A  324 (468)
T PF10300_consen  247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERL-KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA  324 (468)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence            466999999999999999999999999999655 999999999999999644432    3444567887777 9999999


Q ss_pred             HHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCc-------hHHHHhhh
Q 020094          263 ESYFDQAVKSAP-DDCYVLASYAKFLWDAGDD-------EEEEQDNE  301 (331)
Q Consensus       263 ~~yfekAL~ldP-~d~~vl~~LA~~L~~lG~~-------eEa~~~~~  301 (331)
                      ..+|.+.++.+. ..+...|..|.++..+++.       +++.+.++
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~  371 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFR  371 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHH
Confidence            999999999888 4566778889999999999       66666555

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.57  E-value=0.0006  Score=59.62  Aligned_cols=87  Identities=25%  Similarity=0.308  Sum_probs=78.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHH
Q 020094          213 YARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD----CYVLASYAKFLW  288 (331)
Q Consensus       213 LA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d----~~vl~~LA~~L~  288 (331)
                      -|.++.+ .|+++.|++.|.+||.+-|.++-+|++.+..+.. +|+.++|+.-+.+|+++....    |..+...+.+|.
T Consensus        49 ~~valaE-~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR  126 (175)
T KOG4555|consen   49 KAIALAE-AGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR  126 (175)
T ss_pred             HHHHHHh-ccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence            3455556 8999999999999999999999999999999998 999999999999999997633    567888899999


Q ss_pred             HcCCchHHHHhhh
Q 020094          289 DAGDDEEEEQDNE  301 (331)
Q Consensus       289 ~lG~~eEa~~~~~  301 (331)
                      ..|+++.|..+++
T Consensus       127 l~g~dd~AR~DFe  139 (175)
T KOG4555|consen  127 LLGNDDAARADFE  139 (175)
T ss_pred             HhCchHHHHHhHH
Confidence            9999999988887

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.57  E-value=0.0013  Score=65.28  Aligned_cols=128  Identities=18%  Similarity=0.207  Sum_probs=102.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHH-----------HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFL-----------KEVRGDFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L-----------~~~~gd~ekAee~~erALeldP~d~~al~  246 (331)
                      .++.++|++++|+.-|.++|.-+|.+   .++...++.+-           +...||+..|+++..+.|++.|=|+..+.
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~  193 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQ  193 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHH
Confidence            35667799999999999999999954   34444444221           11247899999999999999999998887


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhc-ccCC
Q 020094          247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQH-QTDH  309 (331)
Q Consensus       247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~-~~~~  309 (331)
                      ..+.++.. .|+...|+.-++.+-++..++.+.++.+..+++..|+.++.-+..+|-++ .+++
T Consensus       194 ~Rakc~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdH  256 (504)
T KOG0624|consen  194 ARAKCYIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDH  256 (504)
T ss_pred             HHHHHHHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcch
Confidence            77777776 99999999999999999999999999999999999999888777776555 4444

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.55  E-value=0.00022  Score=45.58  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=14.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~  275 (331)
                      +|+.+|.+++. .|++++|+.+|+++++++|+
T Consensus         3 ~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    3 AWYYLGQAYYQ-LGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcC
Confidence            34444444444 44444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.55  E-value=0.00023  Score=45.50  Aligned_cols=34  Identities=18%  Similarity=0.227  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d  241 (331)
                      +.+++.+|.+++. .|++++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcCC
Confidence            5688999999776 999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.54  E-value=0.00031  Score=69.88  Aligned_cols=120  Identities=11%  Similarity=0.009  Sum_probs=94.2

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhCCC----
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--------------LANPS----  240 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erAL--------------eldP~----  240 (331)
                      +|.||+..|+|++|+..|.-+.+.+--+.+++.+||.+.+. .|.|.+|..+..+|-              +++..    
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~  141 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL  141 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence            57899999999999999999999888889999999988766 899999887765542              22211    


Q ss_pred             --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          241 --------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       241 --------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                              -..-...+|.+.|+ .-.|.+|+..|++.+.-+|+-..+-.++|.+|.++.-++-....+
T Consensus       142 ~fh~~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl  208 (557)
T KOG3785|consen  142 TFHSSLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVL  208 (557)
T ss_pred             HHHHHHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence                    01112246666777 678999999999999999988888889999999999887765444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.52  E-value=0.0012  Score=62.90  Aligned_cols=104  Identities=16%  Similarity=0.171  Sum_probs=84.0

Q ss_pred             ccchHHHHHhC-CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHH
Q 020094          176 SGSNNNYSNNN-HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADL  251 (331)
Q Consensus       176 ~~N~A~~y~s~-gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA~l  251 (331)
                      ...+|..-+.. ++.+.|..+|+++++..|.+..+|..|..++.. .+|.++|..+|++++..-|.+.   .+|..+..+
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~f  116 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LNDINNARALFERAISSLPKEKQSKKIWKKFIEF  116 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            44567775554 555669999999999999999999999999876 8999999999999999877665   688788888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLA  281 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~  281 (331)
                      -.. .|+.+...++++++.+..|++..+..
T Consensus       117 E~~-~Gdl~~v~~v~~R~~~~~~~~~~~~~  145 (280)
T PF05843_consen  117 ESK-YGDLESVRKVEKRAEELFPEDNSLEL  145 (280)
T ss_dssp             HHH-HS-HHHHHHHHHHHHHHTTTS-HHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHHhhhhhHHHH
Confidence            777 99999999999999999998665444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.43  E-value=0.0016  Score=64.45  Aligned_cols=119  Identities=15%  Similarity=0.086  Sum_probs=99.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHc
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSD---GNILSLYADLIWQAH  256 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel-dP~d---~~al~~yA~ll~~~~  256 (331)
                      ..+...|++.+|.....+.|...|.+-.++-.--.+++. .|+...-.-.++|.+-. ||+-   .++.-+|+-.+.+ .
T Consensus       111 ai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy-~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~  188 (491)
T KOG2610|consen  111 AILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFY-NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-C  188 (491)
T ss_pred             HHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHh-ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-h
Confidence            445566888889899999999999998876555455444 78888888888999877 7765   5677678777887 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |-|++|++..++|+++++.|+.+.-..+.++...++..|+.+-++
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence            999999999999999999999999999999999999999987766

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.43  E-value=0.00028  Score=45.46  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~  275 (331)
                      +|.++|.+++. ++++++|+.+|++|++++|+
T Consensus         3 ~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    3 AYYNLGNAYFQ-LGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence            44445555554 55555555555555555553

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.41  E-value=0.0025  Score=68.87  Aligned_cols=124  Identities=13%  Similarity=0.116  Sum_probs=94.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPS--D----GNI  244 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~-----~~l~nLA~~L~~~~gd~ekAee~~erALeldP~--d----~~a  244 (331)
                      ....+..+...+++++|..+++++++..+...     .++..+|.++.. .|++++|+.++++++.....  +    ..+
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~-~G~~~~A~~~~~~al~~~~~~g~~~~~~~~  533 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC-KGELARALAMMQQTEQMARQHDVYHYALWS  533 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence            34467778889999999999999998655432     234566666554 99999999999999976432  1    234


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPD--------DCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP~--------d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +..++.+++. .|++++|..++++++++...        ...++..++.+++..|+.++|...++
T Consensus       534 ~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~  597 (903)
T PRK04841        534 LLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR  597 (903)
T ss_pred             HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            5567777787 99999999999999997331        23455677889999999999987776

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.38  E-value=0.00034  Score=45.10  Aligned_cols=34  Identities=26%  Similarity=0.301  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d  241 (331)
                      +.+++++|.++.. .+++++|+.+|++||+++|+|
T Consensus         1 a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQ-LGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHH-hCCchHHHHHHHHHHHHCcCC
Confidence            4567888888655 888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0004  Score=65.77  Aligned_cols=92  Identities=15%  Similarity=0.084  Sum_probs=81.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      -..|..|+.+|-+||.++|..+.+|.+-+..+++ .++++.+..--++|++++|+..-.++.++..+.....+.++.+.+
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~L  101 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVL  101 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            4568999999999999999999999899998888 999999999999999999999999999999999999999999988


Q ss_pred             hhhhcccCCCCCCCCc
Q 020094          301 EESQHQTDHSHTSPPN  316 (331)
Q Consensus       301 ~~~~~~~~~~~~~~~~  316 (331)
                      +   .++...+..|++
T Consensus       102 q---ra~sl~r~~~~~  114 (284)
T KOG4642|consen  102 Q---RAYSLLREQPFT  114 (284)
T ss_pred             H---HHHHHHhcCCCC
Confidence            7   444444444444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=97.35  E-value=0.0037  Score=67.54  Aligned_cols=124  Identities=15%  Similarity=0.120  Sum_probs=95.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--------D  241 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~--------d  241 (331)
                      ..+++..+...|++++|..+|++++......      ...+.++|.++.. .|++++|+.++++++.+...        .
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            3567888889999999999999999764321      2345667777665 99999999999999886321        2


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP-----DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP-----~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..++..++.+++. .|++++|..++++++.+..     .....+..++.++...|+.++|...++
T Consensus       573 ~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~  636 (903)
T PRK04841        573 EFLLRIRAQLLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLN  636 (903)
T ss_pred             HHHHHHHHHHHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3345567778888 8999999999999988743     124566678999999999999976655

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.34  E-value=0.00067  Score=61.60  Aligned_cols=69  Identities=22%  Similarity=0.217  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--c-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          224 FAKAEELCGRAILANPSDGNILSLYADLIWQA--H-------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       224 ~ekAee~~erALeldP~d~~al~~yA~ll~~~--~-------Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      ++.|.+.++.+...||+|++.+.+.+..+.+.  .       .-+++|+.-|++||.++|+..+++.++|.+|...+.
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            68999999999999999999999999998873  1       225688888999999999999999999999997764

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.0016  Score=62.73  Aligned_cols=123  Identities=17%  Similarity=0.114  Sum_probs=102.5

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHhCC--CCHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRA----ILANP--SDGNILSLYA  249 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~n-P~n~~~l~nLA~~L~~~~gd~ekAee~~erA----LeldP--~d~~al~~yA  249 (331)
                      +-|+.|+--.++|.-.+..|.+.++.+ |.++.....|+.+... .||.+-|..+|++.    -+++-  ++-.|..+.+
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ-~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQ-IGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            446667777889999999999999998 6789999999999654 99999999999944    33443  3445565666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++.- .+++..|...|.+.+..||.++.+.-+-|.|+.-+|+..+|.|.++
T Consensus       260 ~i~lg-~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e  310 (366)
T KOG2796|consen  260 FLHLG-QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLE  310 (366)
T ss_pred             hheec-ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHH
Confidence            66665 8999999999999999999999999999999999999999999998

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.0047  Score=63.64  Aligned_cols=93  Identities=13%  Similarity=0.266  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094          190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (331)
Q Consensus       190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekA  269 (331)
                      .+-...|++|+...+.|+.+|.+|..+. ...+.+.+-...|.+++...|+++++|...|.-.++..-+++.|...|.++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~-kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFC-KKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHH-HHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            5667889999999999999999998884 436669999999999999999999999777777777344599999999999


Q ss_pred             HHhCCCCHHHHHHH
Q 020094          270 VKSAPDDCYVLASY  283 (331)
Q Consensus       270 L~ldP~d~~vl~~L  283 (331)
                      +..+|+++.+|..+
T Consensus       167 LR~npdsp~Lw~ey  180 (568)
T KOG2396|consen  167 LRFNPDSPKLWKEY  180 (568)
T ss_pred             hhcCCCChHHHHHH
Confidence            99999998877554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.22  E-value=0.00096  Score=65.41  Aligned_cols=78  Identities=14%  Similarity=0.193  Sum_probs=56.0

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      ...+.|.|.-.++.|+.++|..+|+.|++++|++++++..+|.+... .++.-+|-+||-+|+.++|.|..++.+.+..
T Consensus       116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT  193 (472)
T KOG3824|consen  116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRART  193 (472)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence            44566677777777777777777777777777777777777777554 5777777777777777777777777665543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.20  E-value=0.0076  Score=52.77  Aligned_cols=84  Identities=13%  Similarity=0.097  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVL  280 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl  280 (331)
                      +..++.-|.-... .|+|.+|++.|+.+...-|..   ..+...++.+++. .+++++|+..+++-|+++|.+   .+++
T Consensus        10 ~~~ly~~a~~~l~-~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa~   87 (142)
T PF13512_consen   10 PQELYQEAQEALQ-KGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYAY   87 (142)
T ss_pred             HHHHHHHHHHHHH-hCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHHH
Confidence            4456666666444 899999999999999998864   4667778999998 999999999999999999955   5788


Q ss_pred             HHHHHHHHHcCC
Q 020094          281 ASYAKFLWDAGD  292 (331)
Q Consensus       281 ~~LA~~L~~lG~  292 (331)
                      +..|.++.....
T Consensus        88 Y~~gL~~~~~~~   99 (142)
T PF13512_consen   88 YMRGLSYYEQDE   99 (142)
T ss_pred             HHHHHHHHHHhh
Confidence            888988887765

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.18  E-value=0.0013  Score=64.79  Aligned_cols=93  Identities=13%  Similarity=0.104  Sum_probs=78.7

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALL----LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~----l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      +..|++..+|..|..+|.+.|+.+-.|+++    ++|-|.+.+. .++|..|+.-+.+|+.++|.+..+++.-|.++++ 
T Consensus        88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e-  165 (390)
T KOG0551|consen   88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE-  165 (390)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-
Confidence            356777789999999999999998776654    5566666555 8999999999999999999999999888898998 


Q ss_pred             cCCHHHHHHHHHHHHHhCC
Q 020094          256 HKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP  274 (331)
                      ..++++|..+.+..+.++-
T Consensus       166 Le~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  166 LERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HHHHHHHHHHHhhhhhhhH
Confidence            9998888888887777654

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.11  E-value=0.0067  Score=64.16  Aligned_cols=123  Identities=21%  Similarity=0.176  Sum_probs=105.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----------  241 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~----n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d----------  241 (331)
                      -..+|++|...++.+.|...|+++...+=.    -+.+|.+.|.+- ....+++.|.++.++|..+ |.+          
T Consensus       390 w~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE-lrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~  467 (835)
T KOG2047|consen  390 WVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME-LRHENFEAALKLMRRATHV-PTNPELEYYDNSE  467 (835)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCC
Confidence            356999999999999999999999998643    367888999874 4488999999999999864 332          


Q ss_pred             ---------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          242 ---------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       242 ---------~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                               ..+|..|+++.-- .|=++.....|++.+++---.+.+..|+|.+|.....++++-+.+|
T Consensus       468 pvQ~rlhrSlkiWs~y~DleEs-~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE  535 (835)
T KOG2047|consen  468 PVQARLHRSLKIWSMYADLEES-LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE  535 (835)
T ss_pred             cHHHHHHHhHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                     3577778776665 8999999999999999988889999999999999999999999998

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.11  E-value=0.0074  Score=51.03  Aligned_cols=84  Identities=20%  Similarity=0.251  Sum_probs=38.5

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHH----------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094          184 NNNHGSSSTDAYYEKMIEANPGNAL----------------------LLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (331)
Q Consensus       184 ~s~gd~ekA~e~yerAL~~nP~n~~----------------------~l~nLA~~L~~~~gd~ekAee~~erALeldP~d  241 (331)
                      ...++.+.+...+++++.+-..+..                      ++..++.++.. .|++++|++++++++.++|.|
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~   95 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE-AGDYEEALRLLQRALALDPYD   95 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCC
Confidence            3456677888888888876432211                      11122222222 445555555555555555555


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094          242 GNILSLYADLIWQAHKDASRAESYFDQA  269 (331)
Q Consensus       242 ~~al~~yA~ll~~~~Gd~deA~~yfekA  269 (331)
                      -.++..+..++.. .|+..+|+.+|++.
T Consensus        96 E~~~~~lm~~~~~-~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   96 EEAYRLLMRALAA-QGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHHHH-TT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CcCHHHHHHHHHHH
Confidence            5555444444444 55555555555444

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=97.10  E-value=0.00091  Score=65.58  Aligned_cols=67  Identities=21%  Similarity=0.289  Sum_probs=61.8

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL  287 (331)
Q Consensus       220 ~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L  287 (331)
                      +.|+.++|..+|+.|+.++|++++++..++.+.-+ .++.-+|-.||-+|+.++|.+.+++.+.++..
T Consensus       128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~  194 (472)
T KOG3824|consen  128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRARTT  194 (472)
T ss_pred             hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence            38999999999999999999999999999999888 89999999999999999999999888776543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.08  E-value=0.013  Score=54.23  Aligned_cols=112  Identities=15%  Similarity=0.085  Sum_probs=94.5

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL-ANPSDGNILSLYADLIWQAHKDASRAESY  265 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALe-ldP~d~~al~~yA~ll~~~~Gd~deA~~y  265 (331)
                      =+-+.+..-..+.+.+.|.+..- +.||..+.+ .|++.+|+.+|++++. +--+|+.++..++...+. .+++.+|...
T Consensus        70 ldP~R~~Rea~~~~~~ApTvqnr-~rLa~al~e-lGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~A~a~~t  146 (251)
T COG4700          70 LDPERHLREATEELAIAPTVQNR-YRLANALAE-LGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEFAAAQQT  146 (251)
T ss_pred             cChhHHHHHHHHHHhhchhHHHH-HHHHHHHHH-hhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccHHHHHHH
Confidence            34566666666677777776544 568888777 9999999999999985 456899999899999998 9999999999


Q ss_pred             HHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          266 FDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       266 fekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +++..+.+|  ..++...-++..|...|.+++|+..+|
T Consensus       147 Le~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe  184 (251)
T COG4700         147 LEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFE  184 (251)
T ss_pred             HHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHH
Confidence            999999999  678889999999999999999987776

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=97.07  E-value=0.0064  Score=62.55  Aligned_cols=121  Identities=17%  Similarity=0.192  Sum_probs=85.2

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      -||++=..++++..|...|++||..+-.+.-+|..||.+- .+......|.-.+.|||.+-|.-...|+.|...--. .|
T Consensus        78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~E-mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~-Lg  155 (677)
T KOG1915|consen   78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFE-MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM-LG  155 (677)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHH-HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hc
Confidence            4677777788888888888888888888888888888774 336667777778888888777777777666444444 67


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.+-|.+.|++=+...| +..+|..+..+-.+-.+.+-|-..++
T Consensus       156 Ni~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYe  198 (677)
T KOG1915|consen  156 NIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYE  198 (677)
T ss_pred             ccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            77777777777777777 44456666666666666555555443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=97.07  E-value=0.0068  Score=64.15  Aligned_cols=125  Identities=22%  Similarity=0.273  Sum_probs=104.2

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADLIW  253 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld--P~d~~al~~yA~ll~  253 (331)
                      -.-|+++....|=++.....|.++|.+-=-.|.+..|||.+|.+ ..-+++|.+.|+|-|.+-  |+-.++|..|.....
T Consensus       480 Ws~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEe-h~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi  558 (835)
T KOG2047|consen  480 WSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEE-HKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFI  558 (835)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-hHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHH
Confidence            45689999999999999999999999999999999999999866 777899999999999885  678889988877665


Q ss_pred             HHc--CCHHHHHHHHHHHHHhCC-CCH-HHHHHHHHHHHHcCCchHHHHhhh
Q 020094          254 QAH--KDASRAESYFDQAVKSAP-DDC-YVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       254 ~~~--Gd~deA~~yfekAL~ldP-~d~-~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..-  -..++|..+|++|++.+| .++ .++.-++.+..+-|--..+...++
T Consensus       559 ~rygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiye  610 (835)
T KOG2047|consen  559 KRYGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYE  610 (835)
T ss_pred             HHhcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            433  368999999999999999 333 566777777777777666766666

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.06  E-value=0.00068  Score=68.55  Aligned_cols=121  Identities=12%  Similarity=-0.008  Sum_probs=94.1

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C--CHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP----S--DGN  243 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP----~--d~~  243 (331)
                      .+|++..|+-.|+|+.|+.+-+.-|++.-..      ..++.|+|.++.. .|+++-|+++|.+++.+.-    .  .+.
T Consensus       198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif-lg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF-LGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh-hcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            4577888999999999999999888775432      3467888888655 8999999999998765532    2  233


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHH
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP------~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      .-+.++..++. ..++++|+.|+.+-+++..      -...+++.|+.++..+|+-+.|-.
T Consensus       277 scYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~  336 (639)
T KOG1130|consen  277 SCYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALY  336 (639)
T ss_pred             HHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHH
Confidence            34467888888 8899999999999888754      345688899999999998887743

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.0034  Score=61.47  Aligned_cols=129  Identities=11%  Similarity=-0.008  Sum_probs=101.4

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH-----------------------
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELC-----------------------  231 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~-----------------------  231 (331)
                      ...-++.||+...+|..|-.||++.-...|........+|+-++. .+.+..|+...                       
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYs  124 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYS  124 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcc
Confidence            345678899999999999999999999999988887777766655 44444433221                       


Q ss_pred             -------HHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          232 -------GRAILANP--SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       232 -------erALeldP--~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                             +-.++.-|  +++.++.+.+-++|+ .|++++|++-|+.|++....++-+-++++.+....++...|-+..-|
T Consensus       125 e~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSE  203 (459)
T KOG4340|consen  125 EGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISE  203 (459)
T ss_pred             cccCcchHHHHHhccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHH
Confidence                   12233334  577788788888888 99999999999999999999999999999999999999999776654


Q ss_pred             hhc
Q 020094          303 SQH  305 (331)
Q Consensus       303 ~~~  305 (331)
                      +..
T Consensus       204 Iie  206 (459)
T KOG4340|consen  204 IIE  206 (459)
T ss_pred             HHH
Confidence            443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.04  E-value=0.0026  Score=59.26  Aligned_cols=88  Identities=19%  Similarity=0.129  Sum_probs=75.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          215 RFLKEVRGDFAKAEELCGRAILANPSDG-----NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD  289 (331)
Q Consensus       215 ~~L~~~~gd~ekAee~~erALeldP~d~-----~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~  289 (331)
                      .-++. .|+|++|..-|.+||++-|.-+     ..|.+.|.++.. ++..+.|+.-..+||+++|.+..++...|.+|.+
T Consensus       103 N~~F~-ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  103 NELFK-NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHhhh-cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            33444 7999999999999999999643     455566677776 9999999999999999999999999999999999


Q ss_pred             cCCchHHHHhhhhhh
Q 020094          290 AGDDEEEEQDNEESQ  304 (331)
Q Consensus       290 lG~~eEa~~~~~~~~  304 (331)
                      +..++++..+++.++
T Consensus       181 ~ek~eealeDyKki~  195 (271)
T KOG4234|consen  181 MEKYEEALEDYKKIL  195 (271)
T ss_pred             hhhHHHHHHHHHHHH
Confidence            999999998887433

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=96.99  E-value=0.0065  Score=65.96  Aligned_cols=110  Identities=13%  Similarity=0.033  Sum_probs=95.2

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (331)
Q Consensus       186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y  265 (331)
                      .+++.+|..-+.+.++..|+...+...-|..+.+ .|++++|..+++..-..-++|-..+-.+-.++.+ ++++++|..+
T Consensus        22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r-~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~   99 (932)
T KOG2053|consen   22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFR-LGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHL   99 (932)
T ss_pred             hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-hcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHH
Confidence            3689999999999999999999998888888766 9999999988877777778888888666666666 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          266 FDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       266 fekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      |++++..+|. .+.++.+=.+|.+.+++.+..+
T Consensus       100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen  100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998 8888888888998888776654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.98  E-value=0.013  Score=56.32  Aligned_cols=115  Identities=17%  Similarity=0.088  Sum_probs=94.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~---~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      .++-+..+++-|+...+++..++.+  .++.+||...-.   ....+..|.-+|+..-+.-|-.+..+.-.+.+... ++
T Consensus       145 qI~lk~~r~d~A~~~lk~mq~ided--~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~~  221 (299)
T KOG3081|consen  145 QILLKMHRFDLAEKELKKMQQIDED--ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-LG  221 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHccchH--HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-hc
Confidence            4566677889999999988777654  555666654222   12458999999999999777788888788888888 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      ++++|+..++.|+..++++++++.|+..+-...|.+.+...
T Consensus       222 ~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~  262 (299)
T KOG3081|consen  222 RYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTE  262 (299)
T ss_pred             CHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHH
Confidence            99999999999999999999999999999999999977654

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=96.94  E-value=0.00061  Score=67.22  Aligned_cols=92  Identities=18%  Similarity=0.081  Sum_probs=77.4

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d  260 (331)
                      .-....|+++.|++.|..+|.+||..+.++..-|.++.+ ++....|+.-|..|+++||+-+.-+-..+..... +|+++
T Consensus       122 ~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e  199 (377)
T KOG1308|consen  122 SEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWE  199 (377)
T ss_pred             HHHhcCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchH
Confidence            344556889999999999999999999999999988654 8999999999999999999876665334444444 89999


Q ss_pred             HHHHHHHHHHHhCC
Q 020094          261 RAESYFDQAVKSAP  274 (331)
Q Consensus       261 eA~~yfekAL~ldP  274 (331)
                      +|..++..|++++-
T Consensus       200 ~aa~dl~~a~kld~  213 (377)
T KOG1308|consen  200 EAAHDLALACKLDY  213 (377)
T ss_pred             HHHHHHHHHHhccc
Confidence            99999999999976

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.89  E-value=0.0027  Score=63.50  Aligned_cols=128  Identities=16%  Similarity=-0.009  Sum_probs=77.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NI  244 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~-----~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~------~a  244 (331)
                      ..|+|+-+....++.+++.|..-.+..-...+     .....++.++. ..+.+++++++|++|+....++.      .|
T Consensus        86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            34666667777777777777776666544333     23333444432 25667777777777776654432      34


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094          245 LSLYADLIWQAHKDASRAESYFDQAVKSAP----------DDCYVLASYAKFLWDAGDDEEEEQDNEESQH  305 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP----------~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~  305 (331)
                      ...++.++-. .+|+++|..+..+|+++-.          ..+.+++.+++.|..+|+.-.|.+.|+|..+
T Consensus       165 cv~Lgslf~~-l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k  234 (518)
T KOG1941|consen  165 CVSLGSLFAQ-LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK  234 (518)
T ss_pred             hhhHHHHHHH-HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            4455555555 6777777777777777632          1234566777777777777666666665444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.89  E-value=0.034  Score=52.98  Aligned_cols=106  Identities=16%  Similarity=0.099  Sum_probs=70.9

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NIL  245 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al  245 (331)
                      -.-..+|-+.-....|++++|..+|+.+...+|..   ..+...++.+.+. .++|+.|+...++-+.+.|+++   +++
T Consensus        33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            34456677777777889999999999999988876   4466777777666 8999999999999999988754   333


Q ss_pred             HHHHHHHHHHcC----C---HHHHHHHHHHHHHhCCCCHH
Q 020094          246 SLYADLIWQAHK----D---ASRAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       246 ~~yA~ll~~~~G----d---~deA~~yfekAL~ldP~d~~  278 (331)
                      +..+...+....    |   ..+|+.-|+..|+.-|+..+
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y  151 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY  151 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence            333333322111    1   22555556666666665443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.81  E-value=0.016  Score=60.84  Aligned_cols=115  Identities=16%  Similarity=0.064  Sum_probs=90.3

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      ..-|.|.++.+..++|+..++   -.++.+..++...|+++|. +++|++|...|+..++.+-++.+... .+.++..  
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYr-l~~ydealdiY~~L~kn~~dd~d~~~-r~nl~a~--  155 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYR-LERYDEALDIYQHLAKNNSDDQDEER-RANLLAV--  155 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCchHHHHH-HHHHHHH--
Confidence            456889999999999999998   5678888888889999887 99999999999999998888877763 3333332  


Q ss_pred             CCHHHHHHH-HHHHHHhCCC-CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          257 KDASRAESY-FDQAVKSAPD-DCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       257 Gd~deA~~y-fekAL~ldP~-d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                         ..+... ..+.+...|+ +.+.+||.|-++...|++.+|++.++
T Consensus       156 ---~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~  199 (652)
T KOG2376|consen  156 ---AAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLE  199 (652)
T ss_pred             ---HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence               112211 5677777775 67899999999999999999986554

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.80  E-value=0.0087  Score=62.65  Aligned_cols=109  Identities=13%  Similarity=0.008  Sum_probs=83.5

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP----SDGNILSLYADLIWQAHKDAS  260 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP----~d~~al~~yA~ll~~~~Gd~d  260 (331)
                      ..++|++|.....+++...|++..++..--.++-. ...|++|.    +.|+.++    .+... +..|.+.|+ .+..|
T Consensus        24 ~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq-~~ky~~AL----k~ikk~~~~~~~~~~~-fEKAYc~Yr-lnk~D   96 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQ-LDKYEDAL----KLIKKNGALLVINSFF-FEKAYCEYR-LNKLD   96 (652)
T ss_pred             cchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhh-hhHHHHHH----HHHHhcchhhhcchhh-HHHHHHHHH-cccHH
Confidence            34789999999999999999999987755444433 67788887    4444444    23332 467888888 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          261 RAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       261 eA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      +|++.++   -+++.+..++.-.|.+++++|+++|+-+.+++.
T Consensus        97 ealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L  136 (652)
T KOG2376|consen   97 EALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHL  136 (652)
T ss_pred             HHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999988   556666777888899999999999998888744

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.76  E-value=0.044  Score=53.40  Aligned_cols=112  Identities=18%  Similarity=0.221  Sum_probs=91.8

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHH
Q 020094          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK--DASRAESYF  266 (331)
Q Consensus       189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G--d~deA~~yf  266 (331)
                      .+.-+.+|++||+.||++..++..|-..... .-+-++..+-+++++..+|+++..|..|..+......  .++.....|
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y  125 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY  125 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence            4788999999999999999999988877555 6688999999999999999999999888777665333  477888888


Q ss_pred             HHHHHhCC------------------CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          267 DQAVKSAP------------------DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       267 ekAL~ldP------------------~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++++.-.                  .-.+++..++.++.+.|..|.|....+
T Consensus       126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Q  178 (321)
T PF08424_consen  126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQ  178 (321)
T ss_pred             HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHH
Confidence            88777622                  123578899999999999999987665

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.76  E-value=0.0028  Score=40.53  Aligned_cols=30  Identities=23%  Similarity=0.283  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP  274 (331)
                      +|..+|.++.. .|++++|+.+|+++++++|
T Consensus         3 ~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    3 AYYNLGKIYEQ-LGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence            44455555555 5666666666666665555

...

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.75  E-value=0.043  Score=55.09  Aligned_cols=121  Identities=15%  Similarity=0.038  Sum_probs=95.1

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQA  255 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA-~~L~~~~gd~ekAee~~erALeldP~-d~~al~~yA~ll~~~  255 (331)
                      |-|..-...|+|.+|+....++-+..+ .|...+.+| .+. ...||++.|-.|+.+|-++.++ +-.+....+.++.. 
T Consensus        89 ~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA-~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-  165 (400)
T COG3071          89 NEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAA-QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-  165 (400)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHH-HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-
Confidence            334444556899999999999665444 444444444 554 4499999999999999999443 34455577888888 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +++++.|..-+.++++..|.++.++.-...+|.+.|++.+..+...
T Consensus       166 ~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~  211 (400)
T COG3071         166 RRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP  211 (400)
T ss_pred             CCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence            9999999999999999999999999999999999999988765443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.011  Score=56.78  Aligned_cols=91  Identities=22%  Similarity=0.237  Sum_probs=80.0

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA-ESY  265 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA-~~y  265 (331)
                      .++..|.-+|+.+=..-|-++.++...|.+.. .+++|++|+..++.|+..+++++.++.++..+... .|.-+++ .++
T Consensus       187 ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l-~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~  264 (299)
T KOG3081|consen  187 EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL-QLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERN  264 (299)
T ss_pred             hhhhhHHHHHHHHhcccCCChHHHccHHHHHH-HhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHH
Confidence            36799999999999888999999999998854 49999999999999999999999999999888888 7766554 588


Q ss_pred             HHHHHHhCCCCHHH
Q 020094          266 FDQAVKSAPDDCYV  279 (331)
Q Consensus       266 fekAL~ldP~d~~v  279 (331)
                      +.+.....|+++.+
T Consensus       265 l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  265 LSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHHHhcCCcchHH
Confidence            88999999988865

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.74  E-value=0.02  Score=57.48  Aligned_cols=127  Identities=15%  Similarity=0.042  Sum_probs=91.0

Q ss_pred             cccccchHHHHHh---CCCcHHHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCC
Q 020094          173 SGFSGSNNNYSNN---NHGSSSTDAYYEK-MIEANPGNALLLGNYARFLKEVR--------GDFAKAEELCGRAILANPS  240 (331)
Q Consensus       173 ~~~~~N~A~~y~s---~gd~ekA~e~yer-AL~~nP~n~~~l~nLA~~L~~~~--------gd~ekAee~~erALeldP~  240 (331)
                      ..+...||-.+.+   .|+.++|+..+.. .....+.+++.+..+|.++....        ..+++|+.+|+++.+++|+
T Consensus       179 ~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~  258 (374)
T PF13281_consen  179 HNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD  258 (374)
T ss_pred             hHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc
Confidence            3456678888888   8999999999999 55567789999999998765421        1378999999999999975


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh---CC-CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          241 DGNILSLYADLIWQAHKDASRAESYFDQAV--------KS---AP-DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       241 d~~al~~yA~ll~~~~Gd~deA~~yfekAL--------~l---dP-~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ...- .|++.++.. .|...+...-.++..        +.   ++ .+...+..+..+..-.++.+.+....+
T Consensus       259 ~Y~G-IN~AtLL~~-~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e  329 (374)
T PF13281_consen  259 YYSG-INAATLLML-AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE  329 (374)
T ss_pred             ccch-HHHHHHHHH-cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4433 477777776 665333322222221        11   23 566777888888889999999987776

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.69  E-value=0.036  Score=46.76  Aligned_cols=80  Identities=21%  Similarity=0.140  Sum_probs=58.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCC----------------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094          221 RGDFAKAEELCGRAILANPS----------------------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~----------------------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~  278 (331)
                      .++...+++.+++|+.+...                      ...++..++..+.. .|++++|+.++++++..+|.+..
T Consensus        19 ~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~l~~dP~~E~   97 (146)
T PF03704_consen   19 AGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLE-AGDYEEALRLLQRALALDPYDEE   97 (146)
T ss_dssp             TT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-HH
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcCCCCHH
Confidence            45666666666666655321                      12344445666666 89999999999999999999999


Q ss_pred             HHHHHHHHHHHcCCchHHHHhhh
Q 020094          279 VLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       279 vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++..+..+|...|+..+|...++
T Consensus        98 ~~~~lm~~~~~~g~~~~A~~~Y~  120 (146)
T PF03704_consen   98 AYRLLMRALAAQGRRAEALRVYE  120 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHH
Confidence            99999999999999999988776

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.0079  Score=59.00  Aligned_cols=116  Identities=13%  Similarity=0.034  Sum_probs=95.7

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020094          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE  263 (331)
Q Consensus       184 ~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~  263 (331)
                      .+..+|+.|++++.--.+.+|.+...+..+|.+++. ..+|..|..+|++.-.+.|........++..+|. .+.+..|+
T Consensus        21 I~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~-~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADAL   98 (459)
T KOG4340|consen   21 IRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYR-LQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADAL   98 (459)
T ss_pred             HHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHH
Confidence            455789999999999999999999999999999877 8999999999999999999999888888888888 88888887


Q ss_pred             HHHHHHHH------------------------------hCC--CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          264 SYFDQAVK------------------------------SAP--DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       264 ~yfekAL~------------------------------ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .......+                              .-|  +++++..+.|-++.+.|++++|-+-++
T Consensus        99 rV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq  168 (459)
T KOG4340|consen   99 RVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ  168 (459)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence            76654332                              123  556677777777888888888876555

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=96.68  E-value=0.035  Score=54.12  Aligned_cols=96  Identities=16%  Similarity=0.159  Sum_probs=81.4

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020094          193 DAYYEKMIEANPGNALLLGNYARFLKEVRG-----------DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (331)
Q Consensus       193 ~e~yerAL~~nP~n~~~l~nLA~~L~~~~g-----------d~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~de  261 (331)
                      ..-|++.++.+|+|...|..|+.+......           -.++-+.+|++||+.+|++...+..|...... .-+.++
T Consensus         5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~   83 (321)
T PF08424_consen    5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEK   83 (321)
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Confidence            356889999999999999999977554322           14678899999999999999999888887777 788899


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          262 AESYFDQAVKSAPDDCYVLASYAKFLWD  289 (331)
Q Consensus       262 A~~yfekAL~ldP~d~~vl~~LA~~L~~  289 (331)
                      ..+-+++++..+|.+..+|..+-.+...
T Consensus        84 l~~~we~~l~~~~~~~~LW~~yL~~~q~  111 (321)
T PF08424_consen   84 LAKKWEELLFKNPGSPELWREYLDFRQS  111 (321)
T ss_pred             HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence            9999999999999999999888777765

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.66  E-value=0.04  Score=52.38  Aligned_cols=116  Identities=15%  Similarity=0.108  Sum_probs=93.2

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANP----GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----------  240 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP----~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-----------  240 (331)
                      ...+|....+.|.++-|..++.++...++    ..+.+...+|.+++. .|+..+|+..++..+.....           
T Consensus       149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~-~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~  227 (352)
T PF02259_consen  149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWA-QGEQEEAIQKLRELLKCRLSKNIDSISNAEL  227 (352)
T ss_pred             HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence            45788999999999999999999988763    257888889999998 99999999999998882111           


Q ss_pred             -----------------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          241 -----------------------DGNILSLYADLIWQAH------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       241 -----------------------d~~al~~yA~ll~~~~------Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                                             -+.++..+|..+.. .      ++.+++..+|++|++.+|.....|+.+|.++.+.=
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~  306 (352)
T PF02259_consen  228 KSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL  306 (352)
T ss_pred             hhccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence                                   12344445555555 5      88999999999999999999999999999988764


Q ss_pred             Cc
Q 020094          292 DD  293 (331)
Q Consensus       292 ~~  293 (331)
                      +.
T Consensus       307 ~~  308 (352)
T PF02259_consen  307 ES  308 (352)
T ss_pred             Hh
Confidence            43

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.58  E-value=0.03  Score=54.51  Aligned_cols=115  Identities=16%  Similarity=0.133  Sum_probs=80.9

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHcCCH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL-SLYADLIWQAHKDA  259 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al-~~yA~ll~~~~Gd~  259 (331)
                      .-....+++..|...|..++...|++.++...||.++.. .|+.+.|..++...=....++.... ..-..++.+ ....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~-~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q-aa~~  219 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLA-AGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ-AAAT  219 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHH-cCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH-HhcC
Confidence            344566899999999999999999999999999998766 9999988877766433222222222 111122222 3333


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       260 deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      .+.. -+++.++.+|+|....+.+|..|...|+.++|-.
T Consensus       220 ~~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale  257 (304)
T COG3118         220 PEIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALE  257 (304)
T ss_pred             CCHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            3333 3667778889999999999999999998888854

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.57  E-value=0.025  Score=56.71  Aligned_cols=88  Identities=13%  Similarity=0.040  Sum_probs=68.7

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~-~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      +-+|+. ..+|..|+.+++-.+..+.... ..-..+|.+.+. .|||++|...|.-+.+.+.-++.++.++|-+.+. .|
T Consensus        29 Ledfls-~rDytGAislLefk~~~~~EEE~~~~lWia~C~fh-LgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~Fy-Lg  105 (557)
T KOG3785|consen   29 LEDFLS-NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFH-LGDYEEALNVYTFLMNKDDAPAELGVNLACCKFY-LG  105 (557)
T ss_pred             HHHHHh-cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHh-hccHHHHHHHHHHHhccCCCCcccchhHHHHHHH-HH
Confidence            444544 4589999999987776654433 333445555555 9999999999999999888899999999999998 99


Q ss_pred             CHHHHHHHHHHH
Q 020094          258 DASRAESYFDQA  269 (331)
Q Consensus       258 d~deA~~yfekA  269 (331)
                      .|.+|.....+|
T Consensus       106 ~Y~eA~~~~~ka  117 (557)
T KOG3785|consen  106 QYIEAKSIAEKA  117 (557)
T ss_pred             HHHHHHHHHhhC
Confidence            999998876655

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.55  E-value=0.008  Score=63.13  Aligned_cols=114  Identities=18%  Similarity=0.045  Sum_probs=94.2

Q ss_pred             cccccchHHHHHhC-CCcHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNN-HGSSSTDAYYEKMIEANPGNALL-LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       173 ~~~~~N~A~~y~s~-gd~ekA~e~yerAL~~nP~n~~~-l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      .-...|.|-+|.+. |+-..|..|+++|+...|....+ +.+||+++.. -+-.-.|..++.+++.++-..|-.++.++.
T Consensus       606 ~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sepl~~~~~g~  684 (886)
T KOG4507|consen  606 IWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEPLTFLSLGN  684 (886)
T ss_pred             eEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCchHHHhcch
Confidence            33467888777766 78899999999999999986653 5788888655 556678999999999999888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                      .+.. ..+.+.|++.|++|++++|++..+...|-.+-.
T Consensus       685 ~~l~-l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  685 AYLA-LKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             hHHH-HhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            8877 999999999999999999999988777755444

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.55  E-value=0.016  Score=56.05  Aligned_cols=112  Identities=13%  Similarity=0.109  Sum_probs=85.7

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEAN----PG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY  248 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~n----P~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~y  248 (331)
                      ....+++.....|+.+.|..||++.-+.+    ..  +-.+..+.|.+ +...+|+..|...|.+.+..||.++.+-++.
T Consensus       214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i-~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnK  292 (366)
T KOG2796|consen  214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL-HLGQNNFAEAHRFFTEILRMDPRNAVANNNK  292 (366)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh-eecccchHHHHHHHhhccccCCCchhhhchH
Confidence            34456666677899999999999655433    22  22233444544 5568999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 020094          249 ADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLW  288 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl~~LA~~L~  288 (331)
                      |.+++. .|+...|++.++.++...|..   -.+.+++...|.
T Consensus       293 ALcllY-lg~l~DAiK~~e~~~~~~P~~~l~es~~~nL~tmyE  334 (366)
T KOG2796|consen  293 ALCLLY-LGKLKDALKQLEAMVQQDPRHYLHESVLFNLTTMYE  334 (366)
T ss_pred             HHHHHH-HHHHHHHHHHHHHHhccCCccchhhhHHHHHHHHHH
Confidence            999988 999999999999999999943   345556655443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.55  E-value=0.0048  Score=39.45  Aligned_cols=33  Identities=24%  Similarity=0.384  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD  241 (331)
Q Consensus       208 ~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d  241 (331)
                      .+++.+|.++.. .|++++|+++|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQ-LGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHH-TTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            466777777655 888888888888888888743

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.49  E-value=0.029  Score=56.31  Aligned_cols=125  Identities=17%  Similarity=0.106  Sum_probs=98.3

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEA----NPGNALLLGNYARFLKE--VRGDFAKAEELCGR-AILANPSDGNILSLY  248 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~----nP~n~~~l~nLA~~L~~--~~gd~ekAee~~er-ALeldP~d~~al~~y  248 (331)
                      ..|+=-.|....+|+.-+.+.+.+-.+    -++.+.+...||-++.+  ..|+.++|++.+.. .....+.+++++..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            446666788889999999999887776    56678888899988765  26899999999999 555667899999888


Q ss_pred             HHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          249 ADLIWQA--------HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       249 A~ll~~~--------~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |.++-+.        ....++|+.+|.++++++| +.+.-.|++.++...|...+....++
T Consensus       224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~  283 (374)
T PF13281_consen  224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELR  283 (374)
T ss_pred             HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHH
Confidence            8775332        1247899999999999995 77888999999999998655554443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=96.45  E-value=0.036  Score=62.92  Aligned_cols=116  Identities=13%  Similarity=0.205  Sum_probs=98.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      -..|++++.++.+-++|...+++||.--|.  +.++....|++-+. .||.+++..+|+..+..+|.-.++|..|...-.
T Consensus      1567 W~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1567 WIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence            456899999999999999999999999998  88899999999776 999999999999999999999999999999888


Q ss_pred             HHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-cCCc
Q 020094          254 QAHKDASRAESYFDQAVKSA--PDDCYVLASYAKFLWD-AGDD  293 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ld--P~d~~vl~~LA~~L~~-lG~~  293 (331)
                      . +++.+-+..+|+|++.+.  |.....++..=.-|.+ .|+.
T Consensus      1646 k-~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde 1687 (1710)
T KOG1070|consen 1646 K-HGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDE 1687 (1710)
T ss_pred             c-cCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCch
Confidence            7 999999999999999984  4555555554444443 3443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.39  E-value=0.012  Score=58.95  Aligned_cols=121  Identities=17%  Similarity=0.040  Sum_probs=92.6

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------CH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPS----------DG  242 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~------~l~nLA~~L~~~~gd~ekAee~~erALeldP~----------d~  242 (331)
                      ++......+.+++++++|++|+++..++.+      +...|+.++.. ..|++||..+..+|.++--.          ..
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~-l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQ-LKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHH-HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            444445567899999999999998655433      45677888555 89999999999999887432          23


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP------~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      -+++.++..+.+ +|..-.|.++.++|.++.-      -.+..+..+|.+|...|+.|.+-..+|
T Consensus       207 ~~lyhmaValR~-~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe  270 (518)
T KOG1941|consen  207 MSLYHMAVALRL-LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE  270 (518)
T ss_pred             HHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence            455567777777 9999999999999988832      445677889999999999888776666

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.38  E-value=0.0067  Score=62.56  Aligned_cols=113  Identities=14%  Similarity=0.047  Sum_probs=90.0

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----h----C
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKM-IEANPG--------NALLLGNYARFLKEVRGDFAKAEELCGRAIL-----A----N  238 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerA-L~~nP~--------n~~~l~nLA~~L~~~~gd~ekAee~~erALe-----l----d  238 (331)
                      .--+.+++.+|+|.+|...+... +...|.        ...+|+|+|.+++. .+.|.-+..+|.+|++     +    .
T Consensus       244 ~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~  322 (696)
T KOG2471|consen  244 LLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQ-LGCYQASSVLFLKALRNSCSQLRNGLK  322 (696)
T ss_pred             HHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeee-hhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence            33567888899999998876532 333444        35567899988776 8999999999999996     1    1


Q ss_pred             C---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          239 P---------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       239 P---------~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                      |         ....++++.+..+.. .|+.-+|.++|.+|++..-.++.+|..+|.+.+..-
T Consensus       323 ~~~~~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~  383 (696)
T KOG2471|consen  323 PAKTFTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMAL  383 (696)
T ss_pred             CCcceehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            1         245778889888887 999999999999999999999999999999887543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.36  E-value=0.033  Score=44.76  Aligned_cols=67  Identities=16%  Similarity=0.054  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHH
Q 020094          192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--GNILSLYADLIWQAHKDAS  260 (331)
Q Consensus       192 A~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d--~~al~~yA~ll~~~~Gd~d  260 (331)
                      .+..+++.++.||+|..+.+.+|..+.. .|++++|++.+..+|+.++++  ..+...+..++-. .|.-+
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~-lg~~~   75 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFEL-LGPGD   75 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHH-H-TT-
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHH-cCCCC
Confidence            4567788888899999888888888665 888999999999998888764  5555444444333 55544

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=96.35  E-value=0.023  Score=47.81  Aligned_cols=93  Identities=13%  Similarity=0.059  Sum_probs=58.5

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC---C-------HHHHHHHHHHHHHhCCCCHHHH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRG---D-------FAKAEELCGRAILANPSDGNIL  245 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~---~~l~nLA~~L~~~~g---d-------~ekAee~~erALeldP~d~~al  245 (331)
                      .|.-++..|++-+|+++.+..+..++++.   .++..-|.+++....   |       +-.|.++|.+++.+.|+.+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            46778899999999999999999999877   444444555433111   1       2346777777777777665555


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          246 SLYADLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                      +.+|.-+-- ...|++++...++++..
T Consensus        82 ~~la~~l~s-~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGS-VKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhh-HHHHHHHHHHHHHHhcc
Confidence            555444322 33345555555555443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.34  E-value=0.063  Score=55.59  Aligned_cols=102  Identities=14%  Similarity=0.110  Sum_probs=79.1

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.-+-.+|..|..+.+.+.+-...|.+++..+|+++++|..-|.-.++..-+.+.|..++.++|+.+|+.+..|..|-..
T Consensus       104 D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrm  183 (568)
T KOG2396|consen  104 DVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRM  183 (568)
T ss_pred             CHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHH
Confidence            45567789999999999999999999999999999999998887777755569999999999999999999999766554


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDC  277 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~  277 (331)
                      -..    +.+=...-++.+..+..+.
T Consensus       184 EL~----~~~Kl~~rr~~~g~~~~~~  205 (568)
T KOG2396|consen  184 ELM----YAEKLRNRREELGLDSSDK  205 (568)
T ss_pred             HHH----HHHHHHHHHHHhccccchh
Confidence            433    2222233445555554333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.33  E-value=0.027  Score=56.06  Aligned_cols=118  Identities=18%  Similarity=0.092  Sum_probs=92.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEA-NPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~-nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      +.++.+|+...-+..+++++-. ||+-   ..+...||--+.+ .|-|++|++..++|+++||.|+-+--..+-++.+ .
T Consensus       145 ~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~  222 (491)
T KOG2610|consen  145 DAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-N  222 (491)
T ss_pred             hHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-c
Confidence            3567778889999999999988 8887   4455566655555 8999999999999999999999998888888888 9


Q ss_pred             CCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          257 KDASRAESYFDQAVKSAP----DDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP----~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      +++.++++++.+--..=-    --+..|-..|.++..-++++.+...+
T Consensus       223 ~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  223 GRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             chhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            999999998876533211    11334566788888889998886654

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=96.31  E-value=0.0072  Score=59.42  Aligned_cols=88  Identities=6%  Similarity=0.147  Sum_probs=66.5

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (331)
Q Consensus       196 yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~  275 (331)
                      |.++-...|+++.+|..|+.+... .+-|.+-...|.++++..|.|++.|...+..-+...++++-+...|.+++..+|+
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k-~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~  174 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIK-KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSR  174 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCC
Confidence            445566678888888888866443 6778888888888888888888888665555555478888888888888888888


Q ss_pred             CHHHHHHHH
Q 020094          276 DCYVLASYA  284 (331)
Q Consensus       276 d~~vl~~LA  284 (331)
                      ++.+|..+-
T Consensus       175 ~p~iw~eyf  183 (435)
T COG5191         175 SPRIWIEYF  183 (435)
T ss_pred             CchHHHHHH
Confidence            888776553

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=96.26  E-value=0.092  Score=49.29  Aligned_cols=116  Identities=16%  Similarity=0.060  Sum_probs=77.8

Q ss_pred             CCcccccchHHHHHh----CCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHH------cCCHHHHHHHHHHHHHhCC
Q 020094          171 GGSGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEV------RGDFAKAEELCGRAILANP  239 (331)
Q Consensus       171 g~~~~~~N~A~~y~s----~gd~ekA~e~yerAL~~nP~n-~~~l~nLA~~L~~~------~gd~ekAee~~erALeldP  239 (331)
                      |+..-..+|+..|..    ..++.+|..+|+++....-.. ......++.++...      .-+..+|..+|.+|.... 
T Consensus       107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~-  185 (292)
T COG0790         107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG-  185 (292)
T ss_pred             ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence            344445556666666    357899999999988875444 34456666664331      013457999999998877 


Q ss_pred             CCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          240 SDGNILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       240 ~d~~al~~yA~ll~~~---~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                       ++.+...++.++..-   ..++.+|..+|++|.+...  ...++.++ ++...|
T Consensus       186 -~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g  236 (292)
T COG0790         186 -NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG  236 (292)
T ss_pred             -CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence             566666677555432   2378899999999988876  77788888 666555

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.26  E-value=0.078  Score=50.82  Aligned_cols=122  Identities=11%  Similarity=0.065  Sum_probs=87.3

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL------GNYARFLKEVRGDFAKAEELCGRAILAN-----PSDGN  243 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l------~nLA~~L~~~~gd~ekAee~~erALeld-----P~d~~  243 (331)
                      ...-.|..|....++++|..++.+|+....+|...+      -..|-+ ......+.++..+|++|..+.     |+-+-
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamL-ake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAML-AKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            334456778888999999999999997666554432      222333 333778999999999998874     43333


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHH
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      .-...+.-..+ ..+.++|+.+|++++++--.+      .+.+..++++|.+...++|+-.
T Consensus       112 maleKAak~le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~  171 (308)
T KOG1585|consen  112 MALEKAAKALE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT  171 (308)
T ss_pred             HHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence            33345555666 789999999999999885432      2456677889999999998864

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.25  E-value=0.0033  Score=64.30  Aligned_cols=80  Identities=16%  Similarity=0.044  Sum_probs=74.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      .++|+.|+..|-+||+++|+++.++.+.+..+.. .++|-.|+.-+.+|++++|.....|+.-|.+...++++.+|..++
T Consensus        17 ~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l   95 (476)
T KOG0376|consen   17 DKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDL   95 (476)
T ss_pred             cchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHH
Confidence            6889999999999999999999999999877776 999999999999999999999999999999999999999998777


Q ss_pred             h
Q 020094          301 E  301 (331)
Q Consensus       301 ~  301 (331)
                      +
T Consensus        96 ~   96 (476)
T KOG0376|consen   96 E   96 (476)
T ss_pred             H
Confidence            5

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.24  E-value=0.022  Score=53.75  Aligned_cols=82  Identities=17%  Similarity=0.173  Sum_probs=70.4

Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          219 EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       219 ~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      ...|-..-|.--|.+++.++|+-+.|++ |.++++...|+|+.|.+.|.-.+++||...++..|.|..+.-.|+++-|..
T Consensus        76 DSlGL~~LAR~DftQaLai~P~m~~vfN-yLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~  154 (297)
T COG4785          76 DSLGLRALARNDFSQALAIRPDMPEVFN-YLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD  154 (297)
T ss_pred             hhhhHHHHHhhhhhhhhhcCCCcHHHHH-HHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence            3355566688889999999999999995 555555559999999999999999999999999999999999999999977


Q ss_pred             hhh
Q 020094          299 DNE  301 (331)
Q Consensus       299 ~~~  301 (331)
                      ++.
T Consensus       155 d~~  157 (297)
T COG4785         155 DLL  157 (297)
T ss_pred             HHH
Confidence            664

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=96.02  E-value=0.048  Score=43.83  Aligned_cols=70  Identities=17%  Similarity=0.068  Sum_probs=56.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHH
Q 020094          227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       227 Aee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      .+.-++++++.+|+|..+.+.++..+.. .|++++|+..+-.+++.++  ++..+.-.+-.++..+|..+..-
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv   78 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLV   78 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHH
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHH
Confidence            3567899999999999999999999998 9999999999999999998  45778888888888888865443

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.00  E-value=0.13  Score=49.71  Aligned_cols=113  Identities=19%  Similarity=0.157  Sum_probs=94.1

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS-RAE  263 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d-eA~  263 (331)
                      +...-.+|+.+.+.+|.+||.|--+|..--.++.....++.+-.+++.+.++-+|.|..+|...- ++.+..|+.. +-+
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr-~ive~l~d~s~rEL  133 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRR-VIVELLGDPSFREL  133 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHH-HHHHHhcCcccchH
Confidence            33455889999999999999888777655566666677899999999999999999999995554 4444489888 889


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          264 SYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       264 ~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      +..++++..|.+|..+|-..-+++..-+.++.+-+
T Consensus       134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~  168 (318)
T KOG0530|consen  134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELA  168 (318)
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHH
Confidence            99999999999999999999999998888877754

>PRK10941 hypothetical protein; Provisional

Probab=95.87  E-value=0.07  Score=51.25  Aligned_cols=69  Identities=14%  Similarity=-0.005  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLA  281 (331)
Q Consensus       211 ~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~  281 (331)
                      .++-.++ ...+++++|..+.++++.++|+++.-+.-.|.++.+ .+.+..|..-++..++.+|+++.+-.
T Consensus       185 ~nLK~~~-~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        185 DTLKAAL-MEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHH-HHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            3444443 448999999999999999999999999888888888 99999999999999999998887643

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.86  E-value=0.11  Score=53.93  Aligned_cols=106  Identities=17%  Similarity=0.057  Sum_probs=80.7

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSDGNILSLYADL  251 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALel-dP~d~~al~~yA~l  251 (331)
                      ....+|+|..+.|+.++|++.|+.+++.+|.  +..+..+|...|.+ .+.|.++...+.|=-.+ -|+.+.+-++-|.+
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLe-lq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLE-LQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHh-cCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            3567999999999999999999999998875  56688899888776 89999998888875332 25556666666665


Q ss_pred             HHHHcCCH---------------HHHHHHHHHHHHhCCCCHHHHH
Q 020094          252 IWQAHKDA---------------SRAESYFDQAVKSAPDDCYVLA  281 (331)
Q Consensus       252 l~~~~Gd~---------------deA~~yfekAL~ldP~d~~vl~  281 (331)
                      ..+..++.               ..|++.+.||++.+|..+..+.
T Consensus       340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YLL  384 (539)
T PF04184_consen  340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYLL  384 (539)
T ss_pred             HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhhh
Confidence            55534331               2467889999999997775543

The molecular function of this protein is uncertain.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=95.85  E-value=0.096  Score=55.08  Aligned_cols=113  Identities=16%  Similarity=0.063  Sum_probs=91.8

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY------ADLI  252 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~y------A~ll  252 (331)
                      +.-.+...+....+...+..++..||+++....+||.++......+.-+..+.+.+....|+|..++..+      +.++
T Consensus        73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  152 (620)
T COG3914          73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL  152 (620)
T ss_pred             HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence            3445555677788999999999999999999999999987755667778888888999999999988666      4544


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      -. .++..++..++.+++.+.|++..+...+........+
T Consensus       153 ~~-l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~r~~~cs  191 (620)
T COG3914         153 KL-LGRTAEAELALERAVDLLPKYPRVLGALMTARQEQCS  191 (620)
T ss_pred             HH-hccHHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHhcc
Confidence            44 8999999999999999999998887777666433333

>smart00028 TPR Tetratricopeptide repeats

Probab=95.64  E-value=0.02  Score=33.51  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          245 LSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP  274 (331)
                      +..++.+++. .+++++|+.+|+++++++|
T Consensus         4 ~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        4 LYNLGNAYLK-LGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHH-HhhHHHHHHHHHHHHccCC
Confidence            3445555554 5555555555555555554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.56  E-value=0.31  Score=45.73  Aligned_cols=109  Identities=13%  Similarity=0.038  Sum_probs=81.8

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcC-----
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV---RGDFAKAEELCGRAILANPSDG-NILSLYADLIWQAHK-----  257 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~---~gd~ekAee~~erALeldP~d~-~al~~yA~ll~~~~G-----  257 (331)
                      .+..+|..+|+  ...+..++.+.++||.++..-   ..|+.+|..+|++|.+..-..+ .+...++..+.  .|     
T Consensus        91 ~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~  166 (292)
T COG0790          91 RDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALA  166 (292)
T ss_pred             ccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhc
Confidence            35788999999  556778899999999887652   3489999999999999865543 33445555444  34     


Q ss_pred             ---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----CCchHHHHhhh
Q 020094          258 ---DASRAESYFDQAVKSAPDDCYVLASYAKFLWDA----GDDEEEEQDNE  301 (331)
Q Consensus       258 ---d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l----G~~eEa~~~~~  301 (331)
                         +...|+.+|.+|....  +......++.+|..-    .+.++|..+++
T Consensus       167 ~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~  215 (292)
T COG0790         167 VAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYK  215 (292)
T ss_pred             ccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHH
Confidence               3448999999998876  778889999888653    36777877776

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=95.52  E-value=0.028  Score=35.18  Aligned_cols=30  Identities=30%  Similarity=0.422  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP~  275 (331)
                      ++.+|.++.. .|++++|+.+|+++++..|+
T Consensus         3 ~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    3 LYRLARCYYK-LGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence            4445555554 55555555555555555553

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.49  E-value=0.1  Score=50.16  Aligned_cols=91  Identities=15%  Similarity=0.176  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020094          209 LLGNYARFLKEVRGDFAKAEELCGRAILA--------NPS----------DGNILSLYADLIWQAHKDASRAESYFDQAV  270 (331)
Q Consensus       209 ~l~nLA~~L~~~~gd~ekAee~~erALel--------dP~----------d~~al~~yA~ll~~~~Gd~deA~~yfekAL  270 (331)
                      ++..-|+-++. .++|++|...|+.||-.        .|.          ....+.+|+.++.. .++|-++++.....+
T Consensus       180 ~l~q~GN~lfk-~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL  257 (329)
T KOG0545|consen  180 VLHQEGNRLFK-LGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEIL  257 (329)
T ss_pred             HHHHhhhhhhh-hccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHH
Confidence            34555666666 89999999999998743        344          33456688888888 999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          271 KSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       271 ~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..+|.|.-+|+..|.+....=+..||..++.
T Consensus       258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~  288 (329)
T KOG0545|consen  258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQ  288 (329)
T ss_pred             hcCCchHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            9999999999999999999889888887765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.48  E-value=0.087  Score=53.77  Aligned_cols=120  Identities=7%  Similarity=-0.010  Sum_probs=88.9

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhC----CCCHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CC
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEAN----PGNALL--LGNYARFLKEVRGDFAKAEELCGRAILANP------SD  241 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~n----P~n~~~--l~nLA~~L~~~~gd~ekAee~~erALeldP------~d  241 (331)
                      .-..|++.++.-.++++.|.++|++.+.+.    ....++  -+.||..+.. ..++++|+.|+.|-+.+.-      ..
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe  314 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGE  314 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            347899999999999999999999876653    333343  4556777665 8899999999998776542      23


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CC-CHHHHHHHHHHHHHcCCchH
Q 020094          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSA-----PD-DCYVLASYAKFLWDAGDDEE  295 (331)
Q Consensus       242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ld-----P~-d~~vl~~LA~~L~~lG~~eE  295 (331)
                      ..+.+.++..+-. .|..++|+.+.++.+++.     +. ......++......+|...-
T Consensus       315 ~RacwSLgna~~a-lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds  373 (639)
T KOG1130|consen  315 LRACWSLGNAFNA-LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS  373 (639)
T ss_pred             HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence            4555578777776 999999999999988873     32 33466788888888886543

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=95.45  E-value=0.078  Score=52.59  Aligned_cols=93  Identities=15%  Similarity=0.004  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          211 GNYARFLKEVRGDFAKAEELCGRAILANPSD----GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF  286 (331)
Q Consensus       211 ~nLA~~L~~~~gd~ekAee~~erALeldP~d----~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~  286 (331)
                      ---|..++. ..+|..|+..|-+.|+..-.|    +..|.+.|.+.+. .|+|-.|+.-..+|+.++|.+.-+++.=|.|
T Consensus        85 KeeGN~~fK-~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc  162 (390)
T KOG0551|consen   85 KEEGNEYFK-EKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKC  162 (390)
T ss_pred             HHHhHHHHH-hhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence            334666555 889999999999999886554    4556667777777 8999999999999999999999999999999


Q ss_pred             HHHcCCchHHHHhhhhhhc
Q 020094          287 LWDAGDDEEEEQDNEESQH  305 (331)
Q Consensus       287 L~~lG~~eEa~~~~~~~~~  305 (331)
                      +..++++.++-.+|+|..+
T Consensus       163 ~~eLe~~~~a~nw~ee~~~  181 (390)
T KOG0551|consen  163 LLELERFAEAVNWCEEGLQ  181 (390)
T ss_pred             HHHHHHHHHHHHHHhhhhh
Confidence            9999998888888886654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.40  E-value=0.2  Score=46.38  Aligned_cols=119  Identities=21%  Similarity=0.126  Sum_probs=79.1

Q ss_pred             hHHHHHhC-CCcHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHH
Q 020094          179 NNNYSNNN-HGSSSTDAYYEKMIEANPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILANPSDG----NILSLYAD  250 (331)
Q Consensus       179 ~A~~y~s~-gd~ekA~e~yerAL~~nP~n~~~---l~nLA~~L~~~~gd~ekAee~~erALeldP~d~----~al~~yA~  250 (331)
                      |..+-... -+..+.....++.+..||.+..+   ...+|....+ .+++++|+..++.++.. |.|.    .+-.+++.
T Consensus        57 Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve-~~~~d~A~aqL~~~l~~-t~De~lk~l~~lRLAr  134 (207)
T COG2976          57 YQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVE-ANNLDKAEAQLKQALAQ-TKDENLKALAALRLAR  134 (207)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHcc-chhHHHHHHHHHHHHH
Confidence            34443333 23347777778888888777554   3456777666 88888888888888853 3332    23335777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +... ++++|+|+..+..... +.-...+....|.+|...|+-.+|.+-++
T Consensus       135 vq~q-~~k~D~AL~~L~t~~~-~~w~~~~~elrGDill~kg~k~~Ar~ay~  183 (207)
T COG2976         135 VQLQ-QKKADAALKTLDTIKE-ESWAAIVAELRGDILLAKGDKQEARAAYE  183 (207)
T ss_pred             HHHH-hhhHHHHHHHHhcccc-ccHHHHHHHHhhhHHHHcCchHHHHHHHH
Confidence            7787 8888888887754422 11234455667888888888888887776

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=95.37  E-value=0.078  Score=38.80  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL  245 (331)
Q Consensus       209 ~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al  245 (331)
                      .++.+|...+. .|+|.+|.++++.+++.+|+|..+.
T Consensus         3 ~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    3 CLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             hHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            34555555444 7777777777777777777777776

>smart00028 TPR Tetratricopeptide repeats

Probab=95.36  E-value=0.029  Score=32.78  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPS  240 (331)
Q Consensus       208 ~~l~nLA~~L~~~~gd~ekAee~~erALeldP~  240 (331)
                      .++..+|.++.. .+++++|+.+|+++++++|+
T Consensus         2 ~~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLK-LGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCC
Confidence            345666766555 77788888888888877775

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.32  E-value=0.091  Score=54.01  Aligned_cols=117  Identities=16%  Similarity=0.080  Sum_probs=83.3

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNIL  245 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n----~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d-~~al  245 (331)
                      .+.+|...-|+++...++.++|+++|++++.....-    ...++.++..+.. +.|+++|.+++.+.++.+.=. +.+.
T Consensus       265 ~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A~~~f~~L~~~s~WSka~Y~  343 (468)
T PF10300_consen  265 NSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEAAEYFLRLLKESKWSKAFYA  343 (468)
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHHHHHHHHHHhccccHHHHHH
Confidence            677889999999999999999999999998543332    3345667777554 899999999999999976543 3333


Q ss_pred             HHHHHHHHHHcCCH-------HHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHH
Q 020094          246 SLYADLIWQAHKDA-------SRAESYFDQAVKSA--------PDDCYVLASYAKFLWD  289 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~-------deA~~yfekAL~ld--------P~d~~vl~~LA~~L~~  289 (331)
                      +..|.++.+ .++.       ++|..+|+++-.+-        |-+..+......+..+
T Consensus       344 Y~~a~c~~~-l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~  401 (468)
T PF10300_consen  344 YLAAACLLM-LGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ  401 (468)
T ss_pred             HHHHHHHHh-hccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence            344445555 8888       88888888776553        3344555555444444

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.25  E-value=0.038  Score=36.51  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Q 020094          246 SLYADLIWQAHKDASRAESYFDQA  269 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekA  269 (331)
                      .++|.++.. .|++++|+.+|+++
T Consensus         3 ~~Lg~~~~~-~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    3 NNLGRIYRQ-QGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHH-CT-HHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHH
Confidence            344444444 55555555555553

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.23  E-value=0.007  Score=59.88  Aligned_cols=81  Identities=25%  Similarity=0.172  Sum_probs=71.6

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQD  299 (331)
Q Consensus       220 ~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~  299 (331)
                      ..|+++.|++.|-+||+++|..+..+...+-++.. .++...|++-+..|+.++|+.+.-|-..+.+...+|++++|..+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            47999999999999999999999999999999988 99999999999999999998877666667777778888888765


Q ss_pred             hh
Q 020094          300 NE  301 (331)
Q Consensus       300 ~~  301 (331)
                      ++
T Consensus       205 l~  206 (377)
T KOG1308|consen  205 LA  206 (377)
T ss_pred             HH
Confidence            54

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.22  E-value=0.038  Score=36.47  Aligned_cols=24  Identities=38%  Similarity=0.637  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094          210 LGNYARFLKEVRGDFAKAEELCGRA  234 (331)
Q Consensus       210 l~nLA~~L~~~~gd~ekAee~~erA  234 (331)
                      +.+||.++.. .|++++|+++|+++
T Consensus         2 l~~Lg~~~~~-~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQ-QGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHH-CT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            4455555443 66666666666663

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=95.19  E-value=0.35  Score=44.81  Aligned_cols=101  Identities=19%  Similarity=0.202  Sum_probs=68.8

Q ss_pred             CCcHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHhCCC------CHHHHH
Q 020094          187 HGSSSTDAYYEKMIEA----NPGN---ALLLGNYARFLKEVRGD-------FAKAEELCGRAILANPS------DGNILS  246 (331)
Q Consensus       187 gd~ekA~e~yerAL~~----nP~n---~~~l~nLA~~L~~~~gd-------~ekAee~~erALeldP~------d~~al~  246 (331)
                      ..++.|++.|.-||..    ..+.   +.++..+|+++-. .++       +.+|.+.|++|++....      ...+++
T Consensus        91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~-~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y  169 (214)
T PF09986_consen   91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD-LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY  169 (214)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence            4678888888776653    2222   5566777888554 666       45688888888876543      346666


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 020094          247 LYADLIWQAHKDASRAESYFDQAVKSAPDD-CYVLASYAKFLWD  289 (331)
Q Consensus       247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~d-~~vl~~LA~~L~~  289 (331)
                      .+|.+.++ .|++++|.++|.+++..-..+ ...+.++|.=+|+
T Consensus       170 LigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~  212 (214)
T PF09986_consen  170 LIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ  212 (214)
T ss_pred             HHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence            77777777 999999999999999874422 2355666655553

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=95.18  E-value=0.99  Score=40.36  Aligned_cols=111  Identities=20%  Similarity=0.114  Sum_probs=83.4

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020094          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (331)
Q Consensus       182 ~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~de  261 (331)
                      +-...++.++++..+.-+--+.|+.+++-..-|.++- +.+++.+|+.+++.+....|..+.+...++.+++. .+|.+ 
T Consensus        19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i-~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~~-   95 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHI-VRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDPS-   95 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCChH-
Confidence            3445568899999999999999999999998888854 49999999999999999999999999999999887 77743 


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094          262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       262 A~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      =..|-.++++..+ |+.+.. +...+....+...+.
T Consensus        96 Wr~~A~evle~~~-d~~a~~-Lv~~Ll~~~~~~~a~  129 (160)
T PF09613_consen   96 WRRYADEVLESGA-DPDARA-LVRALLARADLEPAH  129 (160)
T ss_pred             HHHHHHHHHhcCC-ChHHHH-HHHHHHHhccccchh
Confidence            3344555666655 555544 444444444444443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=95.15  E-value=0.27  Score=47.03  Aligned_cols=81  Identities=14%  Similarity=0.039  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHH
Q 020094          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLA  281 (331)
Q Consensus       208 ~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl~  281 (331)
                      ..|++-|... +..|++++|+.+|+.+....|..+   .++..++-..++ .+++++|+.++++-+.+.|.+   .++++
T Consensus        35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~Y  112 (254)
T COG4105          35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAYY  112 (254)
T ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence            3344444442 348999999999999999998755   677778888888 999999999999999999844   56777


Q ss_pred             HHHHHHHHc
Q 020094          282 SYAKFLWDA  290 (331)
Q Consensus       282 ~LA~~L~~l  290 (331)
                      -.+..+...
T Consensus       113 lkgLs~~~~  121 (254)
T COG4105         113 LKGLSYFFQ  121 (254)
T ss_pred             HHHHHHhcc
Confidence            777776543

>PRK10941 hypothetical protein; Provisional

Probab=95.14  E-value=0.14  Score=49.13  Aligned_cols=71  Identities=7%  Similarity=-0.084  Sum_probs=65.9

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~  246 (331)
                      +..|+-..|...+++++|+.+.++++..+|+++.-+..-|.++.. .+.+..|..-++.-|+..|+++.+-.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~  253 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEM  253 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHH
Confidence            477888899999999999999999999999999999999988666 99999999999999999999998873

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.05  E-value=0.17  Score=52.97  Aligned_cols=116  Identities=20%  Similarity=0.116  Sum_probs=80.7

Q ss_pred             CCcccccchHHHHHhC-----CCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNN-----HGSSSTDAYYEKMIE-----ANPGNALLLGNYARFLKEV---RG-DFAKAEELCGRAIL  236 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~-----gd~ekA~e~yerAL~-----~nP~n~~~l~nLA~~L~~~---~g-d~ekAee~~erALe  236 (331)
                      |+..-..+++.+|..-     .+.++|+.+|+++..     +.-.++.+.+.+|.++...   .. |+.+|..+|.+|.+
T Consensus       242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~  321 (552)
T KOG1550|consen  242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE  321 (552)
T ss_pred             cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence            5555566666666655     578999999998877     1122556777788776541   22 78889999999998


Q ss_pred             hCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          237 ANPSDGNILSLYADLIWQAH--KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       237 ldP~d~~al~~yA~ll~~~~--Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      +...++..+  ++.++....  .++.+|..||.+|.+.  -+..+++.++.+|..-
T Consensus       322 ~g~~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~--G~~~A~~~la~~y~~G  373 (552)
T KOG1550|consen  322 LGNPDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKA--GHILAIYRLALCYELG  373 (552)
T ss_pred             cCCchHHHH--HHHHHHcCCccccHHHHHHHHHHHHHc--CChHHHHHHHHHHHhC
Confidence            777555544  666665533  4577999999988764  4667778888877754

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=95.02  E-value=0.074  Score=55.57  Aligned_cols=89  Identities=27%  Similarity=0.143  Sum_probs=77.4

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEV--RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (331)
Q Consensus       188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~--~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y  265 (331)
                      ....|+..|.++++.-|+...++.++|.++.++  .++.--|+.-+..|+++||-...+++.++.++.+ .+++.+|+.+
T Consensus       389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~  467 (758)
T KOG1310|consen  389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhh
Confidence            346788999999999999999999999886552  3567779999999999999999999999999998 9999999999


Q ss_pred             HHHHHHhCCCCH
Q 020094          266 FDQAVKSAPDDC  277 (331)
Q Consensus       266 fekAL~ldP~d~  277 (331)
                      ...+....|.+.
T Consensus       468 ~~alq~~~Ptd~  479 (758)
T KOG1310|consen  468 HWALQMSFPTDV  479 (758)
T ss_pred             HHHHhhcCchhh
Confidence            988888888444

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.02  E-value=0.029  Score=53.26  Aligned_cols=64  Identities=16%  Similarity=0.198  Sum_probs=45.6

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI  244 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~a  244 (331)
                      |......++.+.|.+.|.+++++.|....-|+.+|.+. ++.|+++.|.+.|++.+++||.|-..
T Consensus         2 a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~g   65 (287)
T COG4976           2 AYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHGG   65 (287)
T ss_pred             cchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCcccccc
Confidence            34455667777777777777777777777777777663 44777777777777777777765543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.88  E-value=0.059  Score=33.67  Aligned_cols=31  Identities=32%  Similarity=0.352  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPS  240 (331)
Q Consensus       209 ~l~nLA~~L~~~~gd~ekAee~~erALeldP~  240 (331)
                      +++.+|.++.. .|++++|+++|+++++..|+
T Consensus         2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence            45666766554 77777777777777777775

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.86  E-value=0.064  Score=55.61  Aligned_cols=119  Identities=10%  Similarity=0.032  Sum_probs=97.0

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA-ILANPS--------DGNILSLYADL  251 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erA-LeldP~--------d~~al~~yA~l  251 (331)
                      ++|....+...+..-.+-++.+.-+.+..+..-+++.|. .|++.+|.+++.+. |...|.        -+.+|++++-+
T Consensus       214 r~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY~-~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcI  292 (696)
T KOG2471|consen  214 RFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEYA-HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCI  292 (696)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHHH-hcchHHHHHHHHhcccccccCccccchhhhheeecCcceE
Confidence            455556666777777777777778889998888888776 99999999988765 555665        56778889888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKS------------------APDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~l------------------dP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|. .+.|..+..+|.+|+..                  ..+.++++|+.|..|...|+.-+|..++.
T Consensus       293 h~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~  359 (696)
T KOG2471|consen  293 HYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQ  359 (696)
T ss_pred             eee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHH
Confidence            888 99999999999999961                  33678899999999999999999887765

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.80  E-value=0.27  Score=46.98  Aligned_cols=111  Identities=18%  Similarity=0.085  Sum_probs=67.8

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLL------GNYARFLKEVRGDFAKAEELCGRAILANPSDG------NILSL  247 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l------~nLA~~L~~~~gd~ekAee~~erALeldP~d~------~al~~  247 (331)
                      +.+|.+. +-++|..+++++|++.-+-..+.      ..+|.++..-..++++|+.+|++|-+-.-.+-      .++..
T Consensus        81 ~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lK  159 (288)
T KOG1586|consen   81 ANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLK  159 (288)
T ss_pred             HHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHH
Confidence            3444444 77888888888888766544443      36676654434778888888888876544321      22223


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCC
Q 020094          248 YADLIWQAHKDASRAESYFDQAVKSAPDDCY-------VLASYAKFLWDAGD  292 (331)
Q Consensus       248 yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~-------vl~~LA~~L~~lG~  292 (331)
                      .+..--+ .++|.+|+..|++.....-++.-       .++..+.|+....+
T Consensus       160 vA~yaa~-leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D  210 (288)
T KOG1586|consen  160 VAQYAAQ-LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKAD  210 (288)
T ss_pred             HHHHHHH-HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhccc
Confidence            3343444 67888888888887776555543       33444555555444

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.77  E-value=0.19  Score=36.78  Aligned_cols=42  Identities=17%  Similarity=0.154  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK  285 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~  285 (331)
                      ++++.+|..++. .|+|++|..+.+++++.+|+|..+..-...
T Consensus         2 d~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            356678888888 999999999999999999999877544433

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.75  E-value=0.72  Score=46.98  Aligned_cols=97  Identities=13%  Similarity=-0.015  Sum_probs=67.2

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      -++...--|+.-.-.|+|+.|..-|+-++. +|..-.+-..=-++-.+.+|+++-|.+|.++|-.+.|+-+.++......
T Consensus       119 epLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~  197 (531)
T COG3898         119 EPLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEA  197 (531)
T ss_pred             hHHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHH
Confidence            344444445566667999999999987765 5554332111011223357999999999999999999988888777677


Q ss_pred             HHHHcCCHHHHHHHHHHHH
Q 020094          252 IWQAHKDASRAESYFDQAV  270 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL  270 (331)
                      ... .||++.|+++++...
T Consensus       198 r~~-~gdWd~AlkLvd~~~  215 (531)
T COG3898         198 RCA-AGDWDGALKLVDAQR  215 (531)
T ss_pred             HHh-cCChHHHHHHHHHHH
Confidence            777 888888888776443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.69  E-value=0.39  Score=52.70  Aligned_cols=108  Identities=16%  Similarity=0.095  Sum_probs=81.4

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~  259 (331)
                      |-.+.+.|..++|..+++..-..-+++...+-.+-.++.+ .+++++|..+|++|++.+|. -..+..+-..+-+ .+.|
T Consensus        50 aLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~y  126 (932)
T KOG2053|consen   50 ALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSY  126 (932)
T ss_pred             HHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHH
Confidence            4566788999999988887777777777777666666544 99999999999999999998 5555455555555 7777


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       260 deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      .+-.+.--+..+..|++++.+.+..-++...
T Consensus       127 k~qQkaa~~LyK~~pk~~yyfWsV~Slilqs  157 (932)
T KOG2053|consen  127 KKQQKAALQLYKNFPKRAYYFWSVISLILQS  157 (932)
T ss_pred             HHHHHHHHHHHHhCCcccchHHHHHHHHHHh
Confidence            7777777777778998887666665555543

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=94.61  E-value=0.12  Score=47.89  Aligned_cols=62  Identities=23%  Similarity=0.141  Sum_probs=34.3

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD  289 (331)
Q Consensus       227 Aee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~  289 (331)
                      |+.||.+|+.+.|.++..++.+|.+... .++.=+|+-||-|++...--...+..++..++.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            4556666666666666666666665555 5666666666666664433345555666666555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=94.56  E-value=0.063  Score=56.69  Aligned_cols=115  Identities=9%  Similarity=-0.052  Sum_probs=89.5

Q ss_pred             ccccchHHHHHhC-CCcHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNN-HGSSSTDAYYEKMIEANPGNAL--LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       174 ~~~~N~A~~y~s~-gd~ekA~e~yerAL~~nP~n~~--~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      -...|+|.+|.++ |+..+|..|+..++-..|....  ++..+|.+|++ .|...+|.-++.-|+.-.|....-++.++.
T Consensus       213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~R-aG~sadA~iILhAA~~dA~~~t~n~y~l~~  291 (886)
T KOG4507|consen  213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHR-AGFSADAAVILHAALDDADFFTSNYYTLGN  291 (886)
T ss_pred             HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHH-cccccchhheeehhccCCccccccceeHHH
Confidence            3477888888877 7889999999999988665433  56788999887 999999999999999888876666677888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      ++.+ .+++...+.+|..|.+.+|.-.......+.+....
T Consensus       292 i~am-l~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~  330 (886)
T KOG4507|consen  292 IYAM-LGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQ  330 (886)
T ss_pred             HHHH-HhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHH
Confidence            8888 99999999999999999994433333344333333

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.54  E-value=0.61  Score=41.69  Aligned_cols=72  Identities=24%  Similarity=0.141  Sum_probs=65.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                      .++.+.++..+.-.-.+.|+.+.+-..-++++.. .|++.+|+.+|+.+.+..|..+++-.-++.||..+++.
T Consensus        23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence            6789999999999999999999999777777776 99999999999999999999999999999999988874

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=94.47  E-value=0.36  Score=44.75  Aligned_cols=54  Identities=24%  Similarity=0.199  Sum_probs=24.8

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHH
Q 020094          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DGNILSLYADLIWQAHKDASRA  262 (331)
Q Consensus       206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~----d~~al~~yA~ll~~~~Gd~deA  262 (331)
                      +++..+.||.++ . ..|.++|+++|.+++++.+.    |+.++..++-+++. ++++++|
T Consensus       140 t~elq~aLAtyY-~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~-~~~~e~A  197 (203)
T PF11207_consen  140 TAELQYALATYY-T-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQK-LKNYEQA  197 (203)
T ss_pred             CHHHHHHHHHHH-H-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHH-hcchhhh
Confidence            444444444442 1 34555555555555544332    34444444444444 4444444

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=94.41  E-value=0.57  Score=45.77  Aligned_cols=126  Identities=11%  Similarity=-0.022  Sum_probs=89.2

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR--FLKEVRGDFAKAEELCGRAILANPSDGNILSLY  248 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~--~L~~~~gd~ekAee~~erALeldP~d~~al~~y  248 (331)
                      .+.--...||.+|...|+.+.|...+...-....+..... .-+.  ++.. ..+..+ ..-+++.+..||+|..+.+.+
T Consensus       166 ~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~q-aa~~~~-~~~l~~~~aadPdd~~aa~~l  242 (304)
T COG3118         166 ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQ-AAATPE-IQDLQRRLAADPDDVEAALAL  242 (304)
T ss_pred             ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHH-HhcCCC-HHHHHHHHHhCCCCHHHHHHH
Confidence            3445567799999999999999988766433333322222 1221  1111 222222 245677788899999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          249 ADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      +..+.. .|+.++|...+-..+..|-  +|..+.-.+-.++...|..+..-..+
T Consensus       243 A~~~~~-~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~  295 (304)
T COG3118         243 ADQLHL-VGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAY  295 (304)
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHH
Confidence            999988 9999999999999999876  77888888988888888665554443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=94.34  E-value=0.67  Score=40.75  Aligned_cols=90  Identities=16%  Similarity=0.100  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020094          192 TDAYYEKMIEANPGNALLLGNYARFLKEV--RGDFAKAEELCGRAIL-ANPS-DGNILSLYADLIWQAHKDASRAESYFD  267 (331)
Q Consensus       192 A~e~yerAL~~nP~n~~~l~nLA~~L~~~--~gd~ekAee~~erALe-ldP~-d~~al~~yA~ll~~~~Gd~deA~~yfe  267 (331)
                      ..+-+.+.-...--.....++||+++-..  ..|..+.+.+++..++ ..|. .-++++.++.-++. .++|++|+.|.+
T Consensus        17 ~~e~~~rq~a~~~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd   95 (149)
T KOG3364|consen   17 GQEEILRQAARSDVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVD   95 (149)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHH
Confidence            33333333333333455677888886542  2356889999999997 5564 44556667777888 999999999999


Q ss_pred             HHHHhCCCCHHHHHH
Q 020094          268 QAVKSAPDDCYVLAS  282 (331)
Q Consensus       268 kAL~ldP~d~~vl~~  282 (331)
                      ..++.+|+|..+..-
T Consensus        96 ~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   96 ALLETEPNNRQALEL  110 (149)
T ss_pred             HHHhhCCCcHHHHHH
Confidence            999999998877543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.20  E-value=0.63  Score=44.18  Aligned_cols=103  Identities=10%  Similarity=-0.060  Sum_probs=77.5

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHh-CCC---------------------------------CHHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEA-NPG---------------------------------NALLLGNYARFL  217 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~-nP~---------------------------------n~~~l~nLA~~L  217 (331)
                      .+....-+|+++...|+..+|+..++..+.. ...                                 .+.++..+|...
T Consensus       183 ~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~  262 (352)
T PF02259_consen  183 LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWL  262 (352)
T ss_pred             CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHH
Confidence            4456777899999999999999999988881 111                                 123445556554


Q ss_pred             HHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----------------CHHHHHHHHHHHHHhCCC
Q 020094          218 KEVR------GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK----------------DASRAESYFDQAVKSAPD  275 (331)
Q Consensus       218 ~~~~------gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G----------------d~deA~~yfekAL~ldP~  275 (331)
                      .. .      .+.+.+..+|.+|++++|+...+|..++.++.....                -...|+.+|-+++...+.
T Consensus       263 ~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  263 DE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             Hh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence            44 4      778999999999999999999999988887655311                123588899999999887

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.20  E-value=0.6  Score=44.65  Aligned_cols=121  Identities=14%  Similarity=0.050  Sum_probs=80.2

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhC---CCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------HH
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEAN---PGNALLLGNYARF--LKEVRGDFAKAEELCGRAILANPSDGNILS------LY  248 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~n---P~n~~~l~nLA~~--L~~~~gd~ekAee~~erALeldP~d~~al~------~y  248 (331)
                      |..|.-..++..|-..|.++....   .+--++.+.|..+  .+. ..+..+|..++++||++--+-.....      .+
T Consensus        41 an~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~i  119 (288)
T KOG1586|consen   41 ANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEI  119 (288)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhH
Confidence            344455556666666666665542   1222233344322  133 67999999999999999877555443      56


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHHhhh
Q 020094          249 ADLIWQAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~------~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.++-....++++|+.+|++|-+.-..+.      ..+...+..-..++++++|...+|
T Consensus       120 aEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iye  178 (288)
T KOG1586|consen  120 AEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYE  178 (288)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66665545899999999999988754221      245666777778889999988776

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=94.02  E-value=1.2  Score=44.40  Aligned_cols=116  Identities=16%  Similarity=0.135  Sum_probs=86.9

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHh--------------------------CCCCHHH---HHHHHHHHHHHcCCHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEA--------------------------NPGNALL---LGNYARFLKEVRGDFAKA  227 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~--------------------------nP~n~~~---l~nLA~~L~~~~gd~ekA  227 (331)
                      ..++.++...|+++.|.++.+|||-.                          .+.|..+   ++.|...+.+ .|-+.-|
T Consensus        44 lqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~-RG~~rTA  122 (360)
T PF04910_consen   44 LQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR-RGCWRTA  122 (360)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh-cCcHHHH
Confidence            35788999999999999999888642                          1233333   3344555544 8889999


Q ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCc
Q 020094          228 EELCGRAILANPS-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD-----DCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       228 ee~~erALeldP~-d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~-----d~~vl~~LA~~L~~lG~~  293 (331)
                      .++++-.+.+||. ||.......+.+..+.++++==+..++........     -+...++++.+++.+++.
T Consensus       123 lE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~  194 (360)
T PF04910_consen  123 LEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE  194 (360)
T ss_pred             HHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence            9999999999998 99888778888877688888777777766553221     235678889999999988

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.94  E-value=0.39  Score=52.72  Aligned_cols=96  Identities=18%  Similarity=0.230  Sum_probs=70.9

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKM----------IEANP----------GNALLLGNYARFLKEVRGDFAKAEELCGRA  234 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerA----------L~~nP----------~n~~~l~nLA~~L~~~~gd~ekAee~~erA  234 (331)
                      -.+|||..+...++.+.|++||+++          |..+|          .++.+|...|.++. ..|+.+.|+.+|..|
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlE-S~GemdaAl~~Y~~A  938 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLE-SVGEMDAALSFYSSA  938 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHh-cccchHHHHHHHHHh
Confidence            3789999999999999999999863          44455          34556666777764 489999988888876


Q ss_pred             HH---------------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          235 IL---------------------ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       235 Le---------------------ldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                      -.                     ....|-.+-+.+|.-|-. .|++.+|+.+|.||-+.
T Consensus       939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence            32                     233455555567776665 89999999998877554

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=93.84  E-value=0.087  Score=50.06  Aligned_cols=63  Identities=21%  Similarity=0.225  Sum_probs=54.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094          214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       214 A~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~  278 (331)
                      |..+.. .+|.+.|.+.|.+|+++.|.+..-|+.++..-.. .|+++.|.+.|++.++++|.|..
T Consensus         2 a~~~~~-~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D~~   64 (287)
T COG4976           2 AYMLAE-SGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPEDHG   64 (287)
T ss_pred             cchhcc-cCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCccccc
Confidence            344444 7899999999999999999999999888765555 99999999999999999997653

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.67  E-value=1.2  Score=46.86  Aligned_cols=112  Identities=13%  Similarity=-0.024  Sum_probs=77.1

Q ss_pred             CCcccccchHHHHHhCC-----CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHH
Q 020094          171 GGSGFSGSNNNYSNNNH-----GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPSDGN  243 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~g-----d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~--gd~ekAee~~erALeldP~d~~  243 (331)
                      |++.-.+.++.+|....     +++.|+.+|.++....  +++..+.+|.++....  .|+.+|.+||.+|.+..-  ..
T Consensus       286 ~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~--~~  361 (552)
T KOG1550|consen  286 GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGH--IL  361 (552)
T ss_pred             cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCC--hH
Confidence            34444567888888843     6788999999886654  4555566676654433  568899999999998654  55


Q ss_pred             HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          244 ILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       244 al~~yA~ll~~~---~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                      +.+.++.++..-   ..+..+|..+|++|.+..  +..+.+.++.++.
T Consensus       362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g--~~~A~~~~~~~~~  407 (552)
T KOG1550|consen  362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKG--NPSAAYLLGAFYE  407 (552)
T ss_pred             HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc--ChhhHHHHHHHHH
Confidence            554576665532   247899999999999998  3343444444444

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.59  E-value=0.57  Score=51.49  Aligned_cols=122  Identities=16%  Similarity=0.137  Sum_probs=83.5

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCC------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANP------------------------GNALLLGNYARFLKEVRGDFAKAEELCGR  233 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP------------------------~n~~~l~nLA~~L~~~~gd~ekAee~~er  233 (331)
                      -.|.+.-..|-.++|+.+|++.-+.+=                        +-...+++||..|.. .+|.+.|++||++
T Consensus       805 kvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea-r~Di~~AleyyEK  883 (1416)
T KOG3617|consen  805 KVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA-RRDIEAALEYYEK  883 (1416)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh-hccHHHHHHHHHh
Confidence            345555666777777777776655331                        123458899999766 8999999999997


Q ss_pred             H----------HHhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------
Q 020094          234 A----------ILANPS----------DGNILSLYADLIWQAHKDASRAESYFDQAVKS---------------------  272 (331)
Q Consensus       234 A----------LeldP~----------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l---------------------  272 (331)
                      +          +.-+|.          |+..|.-.+. |.+..|+.+.|+.+|..|-+.                     
T Consensus       884 ~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgq-YlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~  962 (1416)
T KOG3617|consen  884 AGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQ-YLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAE  962 (1416)
T ss_pred             cCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHH-HHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHH
Confidence            5          333443          3333422333 444489999999999866433                     


Q ss_pred             CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          273 APDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       273 dP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ...|-.+.|.+|+.|.+.|+.-+|.+-+.
T Consensus       963 esgd~AAcYhlaR~YEn~g~v~~Av~FfT  991 (1416)
T KOG3617|consen  963 ESGDKAACYHLARMYENDGDVVKAVKFFT  991 (1416)
T ss_pred             hcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            34667788999999999999888876443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.50  E-value=0.2  Score=32.71  Aligned_cols=29  Identities=14%  Similarity=0.127  Sum_probs=19.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                      .++.++|.++.. +|++++|+.++++++++
T Consensus         3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            355667777776 77777777777777765

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.36  E-value=0.098  Score=51.69  Aligned_cols=81  Identities=10%  Similarity=0.064  Sum_probs=69.9

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      +..-+-..|+.+..+.+-|.+-...|.+++..+|.|.++|..-+.+-+...++.+.+...+.+++..||.+|.+|..|-.
T Consensus       105 ~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr  184 (435)
T COG5191         105 NDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFR  184 (435)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHH
Confidence            45667778899999999999999999999999999999998655555556899999999999999999999999976654


Q ss_pred             H
Q 020094          251 L  251 (331)
Q Consensus       251 l  251 (331)
                      +
T Consensus       185 ~  185 (435)
T COG5191         185 M  185 (435)
T ss_pred             H
Confidence            3

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.14  E-value=0.68  Score=48.94  Aligned_cols=115  Identities=17%  Similarity=-0.013  Sum_probs=85.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNY-ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY  265 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nL-A~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~y  265 (331)
                      +.-..++..+..-+.+++.++.++..+ -.++....++...+....+.++..||+++.+..+++..+......+.-+...
T Consensus        45 ~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~  124 (620)
T COG3914          45 GLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADI  124 (620)
T ss_pred             CchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHH
Confidence            333556777777778899999986544 2222333677778899999999999999999999999988734445555555


Q ss_pred             HHHHHHhCCCCHHHHHHH------HHHHHHcCCchHHHHhhh
Q 020094          266 FDQAVKSAPDDCYVLASY------AKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       266 fekAL~ldP~d~~vl~~L------A~~L~~lG~~eEa~~~~~  301 (331)
                      -..+....|++..++..+      +..+.-+++..++....+
T Consensus       125 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~  166 (620)
T COG3914         125 SEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALE  166 (620)
T ss_pred             HHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            566999999999988887      777777777777765444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.99  E-value=0.82  Score=41.00  Aligned_cols=24  Identities=4%  Similarity=-0.097  Sum_probs=11.8

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIE  201 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~  201 (331)
                      .+|++|.+.|++++|+++|.++..
T Consensus        41 ~l~~~~~~~Gd~~~A~k~y~~~~~   64 (177)
T PF10602_consen   41 DLADHYCKIGDLEEALKAYSRARD   64 (177)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHhh
Confidence            344455555555555555555443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.96  E-value=2.4  Score=40.30  Aligned_cols=116  Identities=16%  Similarity=0.054  Sum_probs=79.4

Q ss_pred             HhCCCcHHHHHHHHHHHHhC-CCCHHH-------HHHHHHHHHHHcC-CHHHHHHHHHHHHHh----CC---C-------
Q 020094          184 NNNHGSSSTDAYYEKMIEAN-PGNALL-------LGNYARFLKEVRG-DFAKAEELCGRAILA----NP---S-------  240 (331)
Q Consensus       184 ~s~gd~ekA~e~yerAL~~n-P~n~~~-------l~nLA~~L~~~~g-d~ekAee~~erALel----dP---~-------  240 (331)
                      .+.|+++.|..+|.|+-... ..+|..       +++.|.-+.. .+ +++.|..++++|.++    ..   .       
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~-~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLS-KKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            35689999999999987765 444444       4555555444 67 999999999999887    22   1       


Q ss_pred             CHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          241 DGNILSLYADLIWQAHKD---ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       241 d~~al~~yA~ll~~~~Gd---~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ...++..++..+.. .+.   +++|+.+++.+-.-.|+.+.++.-.-.++.+.++.++.+..+.
T Consensus        83 r~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~  145 (278)
T PF08631_consen   83 RLSILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILM  145 (278)
T ss_pred             HHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHH
Confidence            12445556666665 444   5577788877877788878777555555555777777776665

It is also involved in sporulation [].

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.95  E-value=2.3  Score=44.96  Aligned_cols=126  Identities=12%  Similarity=0.083  Sum_probs=88.8

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .+..-+|-.+-.+......|...|.+|=+.--.--.++..-|.+-+...+|++-|..+|+--++.-++.+..-..|..++
T Consensus       366 tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL  445 (656)
T KOG1914|consen  366 TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFL  445 (656)
T ss_pred             ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            34455666677777778888888888755432222333322333333468888888888888888888888877888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHh--CC-CCHHHHHHHHHHHHHcCCchHHHHh
Q 020094          253 WQAHKDASRAESYFDQAVKS--AP-DDCYVLASYAKFLWDAGDDEEEEQD  299 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~l--dP-~d~~vl~~LA~~L~~lG~~eEa~~~  299 (331)
                      .. .++-..|..+|++++..  .| ....+|...-.+..+.|+.+-.-+.
T Consensus       446 ~~-lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l  494 (656)
T KOG1914|consen  446 SH-LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL  494 (656)
T ss_pred             HH-hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence            77 88888888888888887  54 4457888888888888887655443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=92.87  E-value=1.9  Score=45.43  Aligned_cols=127  Identities=17%  Similarity=0.215  Sum_probs=93.9

Q ss_pred             ccccchHHHHHhCCC---cHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHG---SSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd---~ekA~e~yerAL~~nP~n~-~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA  249 (331)
                      .....|+++-...-+   +++-..+|++++.+.-.++ .++.+|-.+..+ ..-.+.|..+|.+|-+.--.--.++...|
T Consensus       329 ~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR-~eGlkaaR~iF~kaR~~~r~~hhVfVa~A  407 (656)
T KOG1914|consen  329 LLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRR-AEGLKAARKIFKKAREDKRTRHHVFVAAA  407 (656)
T ss_pred             HHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHH-hhhHHHHHHHHHHHhhccCCcchhhHHHH
Confidence            344445555555544   7777888888888754443 355666666444 44578888899988775433334554455


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..-|..+++.+-|.+.|+-.++..++++..-..+..+|..+++++.+...+|
T Consensus       408 ~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFE  459 (656)
T KOG1914|consen  408 LMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFE  459 (656)
T ss_pred             HHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHH
Confidence            5555558999999999999999999999999999999999999999998887

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.75  E-value=2.5  Score=39.23  Aligned_cols=97  Identities=12%  Similarity=0.092  Sum_probs=68.8

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      .-+|..+...+++++|+..++.++..--+.   ..+...||.++.. ++.+++|...+.....-+-. +.+--..++++.
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~~L~t~~~~~w~-~~~~elrGDill  170 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALKTLDTIKEESWA-AIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHHHHhccccccHH-HHHHHHhhhHHH
Confidence            346777888889999999998887643332   3345677788766 88889888887766553322 223335677777


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC
Q 020094          254 QAHKDASRAESYFDQAVKSAPDD  276 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d  276 (331)
                      . .|+-++|+..|++|++.++.+
T Consensus       171 ~-kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         171 A-KGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             H-cCchHHHHHHHHHHHHccCCh
Confidence            6 899999999999999887533

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.53  E-value=0.32  Score=31.63  Aligned_cols=29  Identities=28%  Similarity=0.335  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          208 LLLGNYARFLKEVRGDFAKAEELCGRAILA  237 (331)
Q Consensus       208 ~~l~nLA~~L~~~~gd~ekAee~~erALel  237 (331)
                      ..+.++|.++.. .|++++|+.++++++.+
T Consensus         3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRA-QGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence            456778888665 78888888888888765

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.52  E-value=1.6  Score=34.71  Aligned_cols=54  Identities=20%  Similarity=0.169  Sum_probs=37.4

Q ss_pred             HcCCHHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          220 VRGDFAKAEELCGRAILANP----SD-----GNILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       220 ~~gd~ekAee~~erALeldP----~d-----~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP  274 (331)
                      ..+||..|.+.+.+.+....    ..     ..++.+++.+... .|++++|+..+++|+++..
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence            36888888666666654422    12     3555567776776 8888888888888888865

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.36  E-value=1.5  Score=45.36  Aligned_cols=116  Identities=12%  Similarity=0.059  Sum_probs=60.7

Q ss_pred             HHHHHhCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHh---------CC---CCHHH
Q 020094          180 NNYSNNNHG-SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE--LCGRAILA---------NP---SDGNI  244 (331)
Q Consensus       180 A~~y~s~gd-~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee--~~erALel---------dP---~d~~a  244 (331)
                      |.-|.+.|. .++|+..++.+++..|.+-..-+..-.+   ....|.+|..  .+-+.+.+         -|   .+...
T Consensus       386 Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~f---vKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei  462 (549)
T PF07079_consen  386 AKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLF---VKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI  462 (549)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHH---HHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence            444555554 6888888888888777765443221111   1222333221  11111111         11   12222


Q ss_pred             HHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          245 LSLY--ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       245 l~~y--A~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      -+-+  |..++. +|+|.++.-|-.=..+++| .+.++.-+|.++....+++||-..+
T Consensus       463 an~LaDAEyLys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l  518 (549)
T PF07079_consen  463 ANFLADAEYLYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYL  518 (549)
T ss_pred             HHHHHHHHHHHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            2222  333454 6777777766666666777 6667777777777777776665443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.32  E-value=2.1  Score=41.37  Aligned_cols=120  Identities=18%  Similarity=0.131  Sum_probs=78.4

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHh-----CCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEA-----NPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILANPSDG------NILS  246 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~-----nP~n~~~l~nLA-~~L~~~~gd~ekAee~~erALeldP~d~------~al~  246 (331)
                      .+..+.....+.++..+|++|...     .|+.+.....-| .++ + .-+.++|+++|++++.+--++.      ..+.
T Consensus        77 aamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l-e-nv~Pd~AlqlYqralavve~~dr~~ma~el~g  154 (308)
T KOG1585|consen   77 AAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL-E-NVKPDDALQLYQRALAVVEEDDRDQMAFELYG  154 (308)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh-h-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            455667778889999999999886     344443333333 342 3 5779999999999987643322      2233


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          247 LYADLIWQAHKDASRAESYFDQAVKS----A--PDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       247 ~yA~ll~~~~Gd~deA~~yfekAL~l----d--P~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..+.++-. ..+|++|-..+.|-.-+    +  |..+..+..+..++.-..++..+++.++
T Consensus       155 k~sr~lVr-l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r  214 (308)
T KOG1585|consen  155 KCSRVLVR-LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR  214 (308)
T ss_pred             HhhhHhhh-hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence            34455555 77888888777764333    2  3445556666666677778989988887

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.22  E-value=3.5  Score=43.70  Aligned_cols=120  Identities=14%  Similarity=0.160  Sum_probs=93.0

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHh--CCC-CHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE---ELCGRAILA--NPS-DGNILS  246 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAe---e~~erALel--dP~-d~~al~  246 (331)
                      +..+.-+|.|-..+|++..|..+|++....-|+...+-...+....+ .++.+.+.   +++...+.-  ++. -...+.
T Consensus       366 ~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r-~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~  444 (577)
T KOG1258|consen  366 PIIHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERR-KGNLEDANYKNELYSSIYEGKENNGILEKLYV  444 (577)
T ss_pred             cHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHH-hcchhhhhHHHHHHHHhcccccCcchhHHHHH
Confidence            44566678888999999999999999999889998888888888666 88887777   333333321  111 234445


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                      .++.+.+.-.++.+.|...+.+|+.+.|++-..+..+..+.....--
T Consensus       445 ~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~~  491 (577)
T KOG1258|consen  445 KFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPSG  491 (577)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCcc
Confidence            67777777789999999999999999999999999998888877743

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=92.15  E-value=0.47  Score=43.87  Aligned_cols=62  Identities=19%  Similarity=0.140  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       192 A~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      |+.||.+|+.+.|++...++++|.+... .++.-.|+-+|-|++...--.+.+..++..++-.
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            7899999999999999999999988665 8999999999999987655467777777665554

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.13  E-value=2.4  Score=44.29  Aligned_cols=125  Identities=14%  Similarity=-0.021  Sum_probs=96.4

Q ss_pred             cchHHHHHhCC--CcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCH----HH
Q 020094          177 GSNNNYSNNNH--GSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN---PSDG----NI  244 (331)
Q Consensus       177 ~N~A~~y~s~g--d~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeld---P~d~----~a  244 (331)
                      .++|+.+...+  ++.+++.|.+..+...|.+   +.....+|.+++....+.+.|..++++|..+-   |+..    ++
T Consensus        11 lGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~a   90 (629)
T KOG2300|consen   11 LGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQA   90 (629)
T ss_pred             HHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhHH
Confidence            46788888888  8999999999998888764   44567889888888999999999999997664   4443    33


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchHHHHhhh
Q 020094          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~----~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ...++.++......+..|...+++|+++....+    ..++.++.+..-..+++-|...++
T Consensus        91 ~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLa  151 (629)
T KOG2300|consen   91 ASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLA  151 (629)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHh
Confidence            445677776645589999999999999977554    466777777777777777765543

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=91.88  E-value=2.7  Score=44.52  Aligned_cols=112  Identities=12%  Similarity=0.112  Sum_probs=89.9

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020094          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD  267 (331)
Q Consensus       188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfe  267 (331)
                      +.+.+...|...|...|..-.+|-.||..-+. .|..+++.+.|+|+|+.-|.....|..|..++....++.+.=...|+
T Consensus        60 ~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~k-lg~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe  138 (577)
T KOG1258|consen   60 DVDALREVYDIFLSKYPLCYGYWKKFADYEYK-LGNAENSVKVFERGVQAIPLSVDLWLSYLAFLKNNNGDPETLRDLFE  138 (577)
T ss_pred             HHHHHHHHHHHHHhhCccHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence            34788888999999999999999999988665 89999999999999999999999998888888776788888888899


Q ss_pred             HHHHhCCC---CHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          268 QAVKSAPD---DCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       268 kAL~ldP~---d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      +|+.....   .+..|..+..+....++...--..+
T Consensus       139 ~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iy  174 (577)
T KOG1258|consen  139 RAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIY  174 (577)
T ss_pred             HHHHhcccchhccHHHHHHHHHHhccccHHHHHHHH
Confidence            99888773   3557777777776666655554433

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=91.77  E-value=0.34  Score=50.86  Aligned_cols=80  Identities=18%  Similarity=-0.015  Sum_probs=69.9

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094          222 GDFAKAEELCGRAILANPSDGNILSLYADLIWQA--HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQD  299 (331)
Q Consensus       222 gd~ekAee~~erALeldP~d~~al~~yA~ll~~~--~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~  299 (331)
                      .....|+..|.++++.-|+....+.+++.++++.  .++.-.|+.-.-.|+.++|-...+++.++.++..+++..||..+
T Consensus       388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~  467 (758)
T KOG1310|consen  388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC  467 (758)
T ss_pred             HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence            4467799999999999999999999999888763  46777888888899999999999999999999999999999865


Q ss_pred             hh
Q 020094          300 NE  301 (331)
Q Consensus       300 ~~  301 (331)
                      ..
T Consensus       468 ~~  469 (758)
T KOG1310|consen  468 HW  469 (758)
T ss_pred             HH
Confidence            54

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=91.51  E-value=0.55  Score=28.72  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=8.4

Q ss_pred             HHHHHHHHHHHHhCCCCHHHH
Q 020094          225 AKAEELCGRAILANPSDGNIL  245 (331)
Q Consensus       225 ekAee~~erALeldP~d~~al  245 (331)
                      ++|...|++++...|.++.+|
T Consensus         4 ~~~r~i~e~~l~~~~~~~~~W   24 (33)
T smart00386        4 ERARKIYERALEKFPKSVELW   24 (33)
T ss_pred             HHHHHHHHHHHHHCCCChHHH
Confidence            333334444444444444443

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>smart00386 HAT HAT (Half-A-TPR) repeats

Probab=90.95  E-value=0.55  Score=28.71  Aligned_cols=32  Identities=25%  Similarity=0.414  Sum_probs=28.5

Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                      |++++|...|++++...|.+..+|..++.+..
T Consensus         1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~e~   32 (33)
T smart00386        1 GDIERARKIYERALEKFPKSVELWLKYAEFEE   32 (33)
T ss_pred             CcHHHHHHHHHHHHHHCCCChHHHHHHHHHHh
Confidence            56889999999999999999999999987653

Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.89  E-value=2.2  Score=41.43  Aligned_cols=90  Identities=18%  Similarity=0.255  Sum_probs=72.4

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf  266 (331)
                      .+|.++..||+.++..+..                  -.+|.++-+.+|.+||.|..||...-.++....-+..+-+.|+
T Consensus        40 e~fr~~m~YfRAI~~~~E~------------------S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l  101 (318)
T KOG0530|consen   40 EDFRDVMDYFRAIIAKNEK------------------SPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL  101 (318)
T ss_pred             hhHHHHHHHHHHHHhcccc------------------CHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence            5778888888766554443                  3556677788899999999999555555555466889999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020094          267 DQAVKSAPDDCYVLASYAKFLWDAGDDE  294 (331)
Q Consensus       267 ekAL~ldP~d~~vl~~LA~~L~~lG~~e  294 (331)
                      .+.++-+|+|..+|-....+...+++..
T Consensus       102 ~eI~e~npKNYQvWHHRr~ive~l~d~s  129 (318)
T KOG0530|consen  102 DEIIEDNPKNYQVWHHRRVIVELLGDPS  129 (318)
T ss_pred             HHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence            9999999999999999999999999766

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.54  E-value=1.7  Score=46.62  Aligned_cols=93  Identities=9%  Similarity=-0.026  Sum_probs=54.0

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      |-|.-.++..+|..+++.|..-+..-|.|      +....+++.+ |....++++|.++++.|=+.+|.++.......-.
T Consensus       359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~C-YL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~  437 (872)
T KOG4814|consen  359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVC-YLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQS  437 (872)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence            44555666667777777777666665543      2334445444 3346667777777777777777666665433333


Q ss_pred             HHHHcCCHHHHHHHHHHHHHh
Q 020094          252 IWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~l  272 (331)
                      ... .+.-++|+.+..+....
T Consensus       438 ~~~-E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  438 FLA-EDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHH-hcchHHHHHHHHHHHhh
Confidence            333 56666666666554433

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=90.39  E-value=1.7  Score=42.04  Aligned_cols=62  Identities=18%  Similarity=-0.000  Sum_probs=55.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          218 KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       218 ~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl  280 (331)
                      +...++.+.|..+..+.+.++|++++-+.--|.++.+ .|.+.-|++-++..++..|+++++-
T Consensus       191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~  252 (269)
T COG2912         191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAE  252 (269)
T ss_pred             HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHH
Confidence            3447899999999999999999999988888888887 9999999999999999999887653

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=89.99  E-value=2  Score=37.86  Aligned_cols=69  Identities=12%  Similarity=0.032  Sum_probs=54.1

Q ss_pred             cchHHHHHhCC---CcHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          177 GSNNNYSNNNH---GSSSTDAYYEKMIE-ANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       177 ~N~A~~y~s~g---d~ekA~e~yerAL~-~nP~n-~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~  246 (331)
                      .|||-++....   +..+.+.+++..+. ..|.. -+.++.||.-+++ .++|++|.+|++..++.+|+|.+++.
T Consensus        36 f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~  109 (149)
T KOG3364|consen   36 FNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALE  109 (149)
T ss_pred             HHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            46676666654   45788999999996 66664 4455666666555 99999999999999999999999983

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=89.95  E-value=3.8  Score=36.45  Aligned_cols=71  Identities=14%  Similarity=0.074  Sum_probs=47.9

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd  258 (331)
                      ..+.+++...+..+=-+-|+.+++-..-+.++ .+.|++.+|+++++....-.+..+....+++.+++- .||
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~-i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~D   93 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLL-IARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGD   93 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHH-HHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCC
Confidence            45666666666666666777777766666553 347777777777777777777777777666666666 665

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.71  E-value=2.7  Score=39.00  Aligned_cols=79  Identities=11%  Similarity=-0.034  Sum_probs=57.1

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHc
Q 020094          216 FLKEVRGDFAKAEELCGRAILAN-PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP----DDCYVLASYAKFLWDA  290 (331)
Q Consensus       216 ~L~~~~gd~ekAee~~erALeld-P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP----~d~~vl~~LA~~L~~l  290 (331)
                      ++|. +..-++|.+-|.++-... =+++..++.+|.++.  ..|.++|+.+|-+++++.+    -|++++..|+.++.+.
T Consensus       115 y~Ws-r~~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~  191 (203)
T PF11207_consen  115 YHWS-RFGDQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKL  191 (203)
T ss_pred             HHhh-ccCcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHh
Confidence            4455 323355665555443221 257888866665444  6899999999999999966    3589999999999999


Q ss_pred             CCchHHH
Q 020094          291 GDDEEEE  297 (331)
Q Consensus       291 G~~eEa~  297 (331)
                      +++++|=
T Consensus       192 ~~~e~AY  198 (203)
T PF11207_consen  192 KNYEQAY  198 (203)
T ss_pred             cchhhhh
Confidence            9998874

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.97  E-value=1.4  Score=29.67  Aligned_cols=30  Identities=13%  Similarity=0.005  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCC
Q 020094          245 LSLYADLIWQAHKDASRAESY--FDQAVKSAPD  275 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~y--fekAL~ldP~  275 (331)
                      |..+|-.+++ +|++++|+.+  |+-+..+++.
T Consensus         4 ~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~   35 (36)
T PF07720_consen    4 LYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKY   35 (36)
T ss_dssp             HHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHH-HhhHHHHHHHHHHHHHHHhccc
Confidence            3344555555 5555555555  3355555543

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=88.95  E-value=3.2  Score=41.40  Aligned_cols=95  Identities=7%  Similarity=0.040  Sum_probs=73.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILA--------NPSDGNILS  246 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~-n~~~l~nLA~~L~~~~gd~ekAee~~erALel--------dP~d~~al~  246 (331)
                      ...+...+.+.|-+.-|.++++-++.+||. ||......-.++..+.++|+=-++.++.....        =|+.+   +
T Consensus       106 l~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a---~  182 (360)
T PF04910_consen  106 LFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA---F  182 (360)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH---H
Confidence            456677888889999999999999999999 88887777777777788888777777765542        23333   3


Q ss_pred             HHHHHHHHHcCCH---------------HHHHHHHHHHHHhCC
Q 020094          247 LYADLIWQAHKDA---------------SRAESYFDQAVKSAP  274 (331)
Q Consensus       247 ~yA~ll~~~~Gd~---------------deA~~yfekAL~ldP  274 (331)
                      ..+..++. .++.               ++|...+++|+..-|
T Consensus       183 S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP  224 (360)
T PF04910_consen  183 SIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFP  224 (360)
T ss_pred             HHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence            55666666 5555               899999999998866

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=88.91  E-value=2.5  Score=35.64  Aligned_cols=87  Identities=18%  Similarity=0.183  Sum_probs=62.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHH-HHHHHHH---cCC-------HHHHHHHHHHHHHhCCCCHHHH
Q 020094          214 ARFLKEVRGDFAKAEELCGRAILANPSDGNIL--SLY-ADLIWQA---HKD-------ASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       214 A~~L~~~~gd~ekAee~~erALeldP~d~~al--~~y-A~ll~~~---~Gd-------~deA~~yfekAL~ldP~d~~vl  280 (331)
                      |.-++. .||+-+|+++.+.++...+++...|  ... +.+++..   ..+       .--|+++|.+++.+.|+.+..+
T Consensus         3 A~~~~~-rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    3 AKDYFA-RGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             HHHHHH-ccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            334444 8999999999999999999877432  222 2222221   122       2368899999999999998888


Q ss_pred             HHHHHHHHHcCCchHHHHhhh
Q 020094          281 ASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       281 ~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.+|.-+--.-.++++-..++
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak  102 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAK  102 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHH
Confidence            998887776777777766665

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=88.86  E-value=2.7  Score=42.31  Aligned_cols=48  Identities=19%  Similarity=0.031  Sum_probs=23.3

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA  237 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel  237 (331)
                      .+-.+-+..-..|+++||..+-++..+|.-   ..--..+|+.++++|++.
T Consensus       198 Rnp~~RI~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka  245 (556)
T KOG3807|consen  198 RNPPARIKAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKA  245 (556)
T ss_pred             cCcHHHHHHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHH
Confidence            333444444555566666655555544421   122245555556555543

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=88.78  E-value=4.8  Score=41.08  Aligned_cols=100  Identities=12%  Similarity=0.171  Sum_probs=80.4

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCC---HHHH
Q 020094          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-GDFAKAEELCGRAILANPSDGNILSLYADLIWQA-HKD---ASRA  262 (331)
Q Consensus       188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~-gd~ekAee~~erALeldP~d~~al~~yA~ll~~~-~Gd---~deA  262 (331)
                      -.+.-+.+...+|+.||+.-.+|+....++...- -++.+=+++++++++.||.|..+| .|-.++... +..   ..+=
T Consensus        90 ~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W-~YRRfV~~~~~~~~~~~~~E  168 (421)
T KOG0529|consen   90 LLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW-HYRRFVVEQAERSRNLEKEE  168 (421)
T ss_pred             hhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch-HHHHHHHHHHhcccccchhH
Confidence            4577788999999999999999999998876422 247899999999999999999999 555555442 222   4566


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          263 ESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       263 ~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                      +.|..++|..++.|..+|-+...++.
T Consensus       169 l~ftt~~I~~nfSNYsaWhyRs~lL~  194 (421)
T KOG0529|consen  169 LEFTTKLINDNFSNYSAWHYRSLLLS  194 (421)
T ss_pred             HHHHHHHHhccchhhhHHHHHHHHHH
Confidence            78999999999999988888877777

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.47  E-value=1.5  Score=29.45  Aligned_cols=33  Identities=12%  Similarity=0.089  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 020094          208 LLLGNYARFLKEVRGDFAKAEEL--CGRAILANPSD  241 (331)
Q Consensus       208 ~~l~nLA~~L~~~~gd~ekAee~--~erALeldP~d  241 (331)
                      +.+..+|..++. .|++++|+.+  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence            567778877666 8999999999  55888888865

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=88.14  E-value=5.9  Score=36.69  Aligned_cols=88  Identities=15%  Similarity=0.144  Sum_probs=60.6

Q ss_pred             cCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHcCCHH-------HHHHHHHHHHHhCC------CCHHHH
Q 020094          221 RGDFAKAEELCGRAILA----NPS---DGNILSLYADLIWQAHKDAS-------RAESYFDQAVKSAP------DDCYVL  280 (331)
Q Consensus       221 ~gd~ekAee~~erALel----dP~---d~~al~~yA~ll~~~~Gd~d-------eA~~yfekAL~ldP------~d~~vl  280 (331)
                      ...+++|++.|.-|+..    ..+   -+.++..+||++.. .++.+       +|..+|++|+....      +...++
T Consensus        90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~-~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~  168 (214)
T PF09986_consen   90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD-LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLL  168 (214)
T ss_pred             CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHH
Confidence            45677777777777643    222   25566678888877 77744       66677777776643      235688


Q ss_pred             HHHHHHHHHcCCchHHHHhhhhhhcccCC
Q 020094          281 ASYAKFLWDAGDDEEEEQDNEESQHQTDH  309 (331)
Q Consensus       281 ~~LA~~L~~lG~~eEa~~~~~~~~~~~~~  309 (331)
                      +-+|.+..++|+.+||.+++.......+.
T Consensus       169 YLigeL~rrlg~~~eA~~~fs~vi~~~~~  197 (214)
T PF09986_consen  169 YLIGELNRRLGNYDEAKRWFSRVIGSKKA  197 (214)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence            88999999999999999888744443333

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.91  E-value=6.4  Score=41.89  Aligned_cols=95  Identities=14%  Similarity=0.124  Sum_probs=74.7

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRA-----ILANPSDGNILSLYADLI  252 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~-n~~~l~nLA~~L~~~~gd~ekAee~~erA-----LeldP~d~~al~~yA~ll  252 (331)
                      |-..+...|=+.-|.++++-++.++|. ||.....+-.++.++..+|+=-+++++..     +..-|+.++.+ .+|.++
T Consensus       348 ~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~-AlA~f~  426 (665)
T KOG2422|consen  348 YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSL-ALARFF  426 (665)
T ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHH-HHHHHH
Confidence            344556678889999999999999999 99988888878777788887777766655     66679998887 677777


Q ss_pred             HHHcCC--HHHHHHHHHHHHHhCC
Q 020094          253 WQAHKD--ASRAESYFDQAVKSAP  274 (331)
Q Consensus       253 ~~~~Gd--~deA~~yfekAL~ldP  274 (331)
                      ...+..  -+-|+..+.+|+...|
T Consensus       427 l~~~~~~~rqsa~~~l~qAl~~~P  450 (665)
T KOG2422|consen  427 LRKNEEDDRQSALNALLQALKHHP  450 (665)
T ss_pred             HhcCChhhHHHHHHHHHHHHHhCc
Confidence            763432  5678899999998876

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.87  E-value=9.9  Score=34.02  Aligned_cols=93  Identities=18%  Similarity=0.059  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH---
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKSAPD--DCY---  278 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~---al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~--d~~---  278 (331)
                      ...+..+|.+++. .||+++|.+.|.++.+.......   ++.+...+... .+++.....++.+|-.+-..  +..   
T Consensus        36 r~~~~~l~~~~~~-~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   36 RMALEDLADHYCK-IGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            3567788988766 99999999999999887655443   33345555566 89999999999999887442  222   


Q ss_pred             -HHHHHHHHHHHcCCchHHHHhhh
Q 020094          279 -VLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       279 -vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       .-...|..+...+++.+|-..+-
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~fl  137 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAELFL  137 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHH
Confidence             23344677778889999987664

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=87.87  E-value=11  Score=32.79  Aligned_cols=80  Identities=18%  Similarity=0.144  Sum_probs=50.1

Q ss_pred             cCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHH---
Q 020094          221 RGDFAKAEELCGRAILANPS------------DGNILSLYADLIWQAHKDASRAESYFDQAV-------KSAPDDCY---  278 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~------------d~~al~~yA~ll~~~~Gd~deA~~yfekAL-------~ldP~d~~---  278 (331)
                      .+-|++|..-|++|++..-.            |+.++..++..+.. .|+|++++.-.++||       +++.+...   
T Consensus        22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            46678888888888776432            55666667777777 888776554444444       44444443   


Q ss_pred             -HHHHHHHHHHHcCCchHHHHhhh
Q 020094          279 -VLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       279 -vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       +.++.+.++..+|+.+||.+.++
T Consensus       101 aaVfsra~Al~~~Gr~~eA~~~fr  124 (144)
T PF12968_consen  101 AAVFSRAVALEGLGRKEEALKEFR  124 (144)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCChHHHHHHHH
Confidence             33667788888888888876655

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=87.59  E-value=3.2  Score=40.30  Aligned_cols=64  Identities=20%  Similarity=0.080  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                      ..++..++..+.. .++++.+++.+++.+..+|.+-..|..+...++. .|+...|+..|++.-..
T Consensus       153 ~~~l~~lae~~~~-~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIA-CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHh-cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHHH
Confidence            3456677777554 8999999999999999999999999888888887 99999999999988774

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=87.18  E-value=5  Score=34.82  Aligned_cols=85  Identities=15%  Similarity=0.112  Sum_probs=57.2

Q ss_pred             CCCcHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH-------HhCCCCHHHH-
Q 020094          186 NHGSSSTDAYYEKMIEANPG------------NALLLGNYARFLKEVRGDFAKAEELCGRAI-------LANPSDGNIL-  245 (331)
Q Consensus       186 ~gd~ekA~e~yerAL~~nP~------------n~~~l~nLA~~L~~~~gd~ekAee~~erAL-------eldP~d~~al-  245 (331)
                      .+-|++|..-|++++.....            ++..+..|+.++.. +|+|++++.-..+|+       +++.+....| 
T Consensus        22 ~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~-Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWI  100 (144)
T PF12968_consen   22 DGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAG-LGRYDECLQSADRALRYFNRRGELHQDEGKLWI  100 (144)
T ss_dssp             HT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHHhhccccccccchhHH
Confidence            36789999999999987422            34456677777666 899987655555554       6777766655 


Q ss_pred             ---HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          246 ---SLYADLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       246 ---~~yA~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                         ++.+..+.. .|+.++|+..|+.+.+.
T Consensus       101 aaVfsra~Al~~-~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen  101 AAVFSRAVALEG-LGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-cCChHHHHHHHHHHHHH
Confidence               234444555 89999999999998763

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.88  E-value=18  Score=32.21  Aligned_cols=72  Identities=18%  Similarity=0.097  Sum_probs=62.7

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                      ..+..+++..+...--+.|+.+.+-..-++++.. .|++++|+.+|+....-.+..++.-.-++.|+.-+++.
T Consensus        23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp   94 (153)
T TIGR02561        23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA   94 (153)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence            7889999999999999999999998666666666 99999999999999998888788888888888888873

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=85.51  E-value=12  Score=37.70  Aligned_cols=78  Identities=18%  Similarity=0.075  Sum_probs=43.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------------------------C-C
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA------------------------P-D  275 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ld------------------------P-~  275 (331)
                      ..+..+-++....|+++||.-+.++..++.--   .--..+|++.|++|++..                        - -
T Consensus       197 ERnp~~RI~~A~~ALeIN~eCA~AyvLLAEEE---a~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~rRDtnv  273 (556)
T KOG3807|consen  197 ERNPPARIKAAYQALEINNECATAYVLLAEEE---ATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQLRRDTNV  273 (556)
T ss_pred             hcCcHHHHHHHHHHHhcCchhhhHHHhhhhhh---hhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhhhcccch
Confidence            45555555666667777776666664444321   223455666666555541                        0 0


Q ss_pred             CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          276 DCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       276 d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      -.++-..++.|-.++|+..||.|.++
T Consensus       274 l~YIKRRLAMCARklGrlrEA~K~~R  299 (556)
T KOG3807|consen  274 LVYIKRRLAMCARKLGRLREAVKIMR  299 (556)
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            12344666677777777777766655

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=85.41  E-value=19  Score=37.08  Aligned_cols=116  Identities=16%  Similarity=0.082  Sum_probs=54.9

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK-AEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ek-Aee~~erALeldP~d~~al~~yA~ll~~~~Gd  258 (331)
                      |..|+..++..++-.+++.+.+.+|+ |+++..|-.+   +.||... =.+-.++...+.|||.......+..-+. .|+
T Consensus       270 Aralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a---r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld-a~e  344 (531)
T COG3898         270 ARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA---RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD-AGE  344 (531)
T ss_pred             HHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh---cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh-ccc
Confidence            44555555555555555555555553 2222222211   1333211 1222333444455566555555555555 666


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCchHHHHhhh
Q 020094          259 ASRAESYFDQAVKSAPDDCYVLASYAKFLW-DAGDDEEEEQDNE  301 (331)
Q Consensus       259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~-~lG~~eEa~~~~~  301 (331)
                      |..|..--+.+...+|....+ .-++.+.. +.|+..+...++-
T Consensus       345 ~~~ARa~Aeaa~r~~pres~~-lLlAdIeeAetGDqg~vR~wlA  387 (531)
T COG3898         345 FSAARAKAEAAAREAPRESAY-LLLADIEEAETGDQGKVRQWLA  387 (531)
T ss_pred             hHHHHHHHHHHhhhCchhhHH-HHHHHHHhhccCchHHHHHHHH
Confidence            666666666666666633322 22333332 3355555544443

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.33  E-value=3.1  Score=42.72  Aligned_cols=32  Identities=16%  Similarity=0.150  Sum_probs=24.9

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020094          239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVK  271 (331)
Q Consensus       239 P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~  271 (331)
                      -+++..|..++...+. +|+++-|+.+|+++-.
T Consensus       344 ~~~~~~W~~Lg~~AL~-~g~~~lAe~c~~k~~d  375 (443)
T PF04053_consen  344 LDDPEKWKQLGDEALR-QGNIELAEECYQKAKD  375 (443)
T ss_dssp             CSTHHHHHHHHHHHHH-TTBHHHHHHHHHHCT-
T ss_pred             cCcHHHHHHHHHHHHH-cCCHHHHHHHHHhhcC
Confidence            3477788888888887 8888888888887643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=84.44  E-value=27  Score=33.14  Aligned_cols=97  Identities=9%  Similarity=0.012  Sum_probs=70.0

Q ss_pred             ccchHHHHHhCC-CcHHHHHHHHHHHHh----CC---CC-------HHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHh
Q 020094          176 SGSNNNYSNNNH-GSSSTDAYYEKMIEA----NP---GN-------ALLLGNYARFLKEVRGD---FAKAEELCGRAILA  237 (331)
Q Consensus       176 ~~N~A~~y~s~g-d~ekA~e~yerAL~~----nP---~n-------~~~l~nLA~~L~~~~gd---~ekAee~~erALel  237 (331)
                      .+|.+.-..+.+ +++.|..++++++.+    ..   ..       ..++..++.++.. .+.   +.+|..+++.+...
T Consensus        38 ~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e  116 (278)
T PF08631_consen   38 CYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLE-WDTYESVEKALNALRLLESE  116 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHh
Confidence            578888888888 999999999999988    22   22       2234555666433 333   46677777777777


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       238 dP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP  274 (331)
                      .|+.+.++.....++.. .++.+++...+.+++..-+
T Consensus       117 ~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  117 YGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             CCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcc
Confidence            88888887555555554 7889999999999988755

It is also involved in sporulation [].

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=84.00  E-value=17  Score=37.24  Aligned_cols=105  Identities=11%  Similarity=0.061  Sum_probs=77.4

Q ss_pred             CCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-----------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          187 HGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEV-----------RGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       187 gd~-ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~-----------~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      +.| +.+++.-.+.+..||+..-+|+.--.++...           +.-+++-+.+...+|+.+|+...+|....+++..
T Consensus        42 ~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~  121 (421)
T KOG0529|consen   42 KEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK  121 (421)
T ss_pred             cccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence            444 7888888899999998877765332222111           1235667888999999999999999999998886


Q ss_pred             HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          255 AHK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       255 ~~G--d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                       ..  ++..-++..+++++.||.|...|.....+......
T Consensus       122 -~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~  160 (421)
T KOG0529|consen  122 -NPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAER  160 (421)
T ss_pred             -CCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhc
Confidence             44  47888999999999999887766655555554443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=83.90  E-value=19  Score=38.25  Aligned_cols=113  Identities=14%  Similarity=0.139  Sum_probs=83.3

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-----------------  238 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld-----------------  238 (331)
                      ...++++|... +.++-...+++.++.+=++...-..||..+ + ..+..++..+|.+|+..-                 
T Consensus       102 l~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~~ReLa~~y-E-kik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~  178 (711)
T COG1747         102 LLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVIGRELADKY-E-KIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLP  178 (711)
T ss_pred             HHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHHHHHHHHHH-H-HhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHH
Confidence            44567788877 677788888899999888888888888874 4 488888888888887532                 


Q ss_pred             ---CCCHHHHHH-------------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          239 ---PSDGNILSL-------------------YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       239 ---P~d~~al~~-------------------yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                         |+|.+..+.                   .....|....++++|++.+...++.|..|..+.-++...+.+.-
T Consensus       179 ~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd~y  253 (711)
T COG1747         179 ELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHDEKDVWARKEIIENLRDKY  253 (711)
T ss_pred             HhccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHHHh
Confidence               333332222                   11223333578999999999999999999999999988888733

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.83  E-value=6.5  Score=42.43  Aligned_cols=87  Identities=11%  Similarity=0.012  Sum_probs=66.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          212 NYARFLKEVRGDFAKAEELCGRAILANPSDG------NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK  285 (331)
Q Consensus       212 nLA~~L~~~~gd~ekAee~~erALeldP~d~------~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~  285 (331)
                      +-|.-+++ ..+|.-++++|...+.--|.|-      ....+++.+|.. ..+.|+|+++++.|-+.+|.++......-.
T Consensus       359 n~A~~~F~-~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  359 NTAKKLFK-MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HhhHHHHH-HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            33444455 7899999999999999877654      344456666665 899999999999999999999887777777


Q ss_pred             HHHHcCCchHHHHhh
Q 020094          286 FLWDAGDDEEEEQDN  300 (331)
Q Consensus       286 ~L~~lG~~eEa~~~~  300 (331)
                      +...-++-++|-...
T Consensus       437 ~~~~E~~Se~AL~~~  451 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCL  451 (872)
T ss_pred             HHHHhcchHHHHHHH
Confidence            777777777775433

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=83.56  E-value=8.8  Score=30.45  Aligned_cols=60  Identities=18%  Similarity=0.154  Sum_probs=43.5

Q ss_pred             hCCCcHHHHHHHHHHHHhCC----CC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHH
Q 020094          185 NNHGSSSTDAYYEKMIEANP----GN-----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNIL  245 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP----~n-----~~~l~nLA~~L~~~~gd~ekAee~~erALeldP--~d~~al  245 (331)
                      ..++|..|.+.+.+.+..-.    ..     ..++.++|.+... .|++++|.+.+++||.+.-  +|...+
T Consensus        10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Are~~D~~~l   80 (94)
T PF12862_consen   10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLARENGDRRCL   80 (94)
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHCCHHHH
Confidence            45789999777777766532    22     3556778887655 8999999999999998754  455555

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=83.18  E-value=2.7  Score=40.63  Aligned_cols=71  Identities=11%  Similarity=0.008  Sum_probs=62.2

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~  246 (331)
                      +..|+=..|....+++.|..+-++.+..+|+++.-+..-|.++.. .+-+.-|++-+...++.-|+++.+-.
T Consensus       183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHH
Confidence            356666677788899999999999999999999998888877554 89999999999999999999998873

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=83.02  E-value=1.6  Score=26.78  Aligned_cols=20  Identities=20%  Similarity=0.223  Sum_probs=9.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHH
Q 020094          246 SLYADLIWQAHKDASRAESYF  266 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yf  266 (331)
                      ..++.+++. .|++++|+..+
T Consensus         5 ~~la~~~~~-~G~~~eA~~~l   24 (26)
T PF07721_consen    5 LALARALLA-QGDPDEAERLL   24 (26)
T ss_pred             HHHHHHHHH-cCCHHHHHHHH
Confidence            344444444 55555555444

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.84  E-value=32  Score=36.30  Aligned_cols=126  Identities=15%  Similarity=-0.011  Sum_probs=80.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHh---CCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C--H
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEA---NPG-------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-D--G  242 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~---nP~-------n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-d--~  242 (331)
                      .-|.+.|-.-.+++.+|++....+.+.   .|.       .+.+...+|.+ +...+.|+.|+..|..|+++--. +  +
T Consensus       326 LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGly-s~sv~~~enAe~hf~~a~k~t~~~dl~a  404 (629)
T KOG2300|consen  326 LEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLY-SHSVNCYENAEFHFIEATKLTESIDLQA  404 (629)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhH-hhhcchHHHHHHHHHHHHHhhhHHHHHH
Confidence            556677777788898888887777664   444       23444455544 33377889999999999876443 2  2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHcCCchHHHHhhhhhhcc
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD----------CYVLASYAKFLWDAGDDEEEEQDNEESQHQ  306 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d----------~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~  306 (331)
                      .+-.++|..|.. .++   +..+|+-.=.+.|.|          ..+++-+|.+.+..+++.||.--.+|+++.
T Consensus       405 ~~nlnlAi~YL~-~~~---~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkm  474 (629)
T KOG2300|consen  405 FCNLNLAISYLR-IGD---AEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKM  474 (629)
T ss_pred             HHHHhHHHHHHH-hcc---HHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            333345665555 444   444454444445542          236677788888888888888777665553

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=81.65  E-value=8.6  Score=46.67  Aligned_cols=112  Identities=11%  Similarity=-0.026  Sum_probs=81.3

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------------
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--------------  241 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d--------------  241 (331)
                      ..++|++....|.++.|-.+.-+|.+..  -+.+..-.|..+|. .||-.+|+..+++.+.++=-+              
T Consensus      1673 wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~-~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQ-TGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHh-hccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence            4578999999999999999998888877  67788888999888 999999999999999664222              


Q ss_pred             ---HHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          242 ---GNILSLYADLIWQAHKDA--SRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       242 ---~~al~~yA~ll~~~~Gd~--deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                         ..++..++..+-+ .+++  +.-+++|..|+++.|....-++.+|..|.+.-
T Consensus      1750 ~i~~~~~L~~~~~~~e-s~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll 1803 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEE-SGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLL 1803 (2382)
T ss_pred             hhhhhHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHHh
Confidence               1123222222222 5553  35669999999999966655666665555443

>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised

Probab=81.29  E-value=7.9  Score=34.51  Aligned_cols=51  Identities=24%  Similarity=0.296  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094          224 FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (331)
Q Consensus       224 ~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d  276 (331)
                      .+..+++.++.++..| ++.++.+++.++.. .|+.++|....+++..+-|.+
T Consensus       127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~-~G~~~eA~~~~~~~~~lyP~~  177 (193)
T PF11846_consen  127 LEAYIEWAERLLRRRP-DPNVYQRYALALAL-LGDPEEARQWLARARRLYPAD  177 (193)
T ss_pred             HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcH
Confidence            4567788888888889 67777789998888 999999999999999999933

This domain is found in bacteria. This presumed domain is about 200 amino acids in length.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=80.39  E-value=26  Score=35.18  Aligned_cols=58  Identities=14%  Similarity=0.067  Sum_probs=42.6

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHH--HHHHH--HHHHHHHcCCHHHHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNAL--LLGNY--ARFLKEVRGDFAKAEELCGRAIL  236 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~--~l~nL--A~~L~~~~gd~ekAee~~erALe  236 (331)
                      +.+.-+++.++|..|...|..++..-|.+..  .+..+  |...|. ..++++|.+++++.+.
T Consensus       136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD-~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWD-RFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHH
Confidence            4566778899999999999999986444444  33333  344566 7889999999987765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.77
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.74
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.73
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.73
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.72
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.71
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.7
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.69
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.68
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.68
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.67
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.67
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.67
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.66
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.66
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.66
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.65
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.65
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.65
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.63
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.63
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.63
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.62
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.62
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.62
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.61
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.61
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.61
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.6
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.6
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.6
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.6
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.59
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.59
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.59
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.59
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.59
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.59
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.58
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.58
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.58
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.57
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.57
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.57
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.57
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.57
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.57
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.56
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.56
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.55
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.55
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.55
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.55
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.55
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.54
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.54
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.54
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.54
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.53
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.53
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.53
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.52
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.52
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.51
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.51
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.51
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.51
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.5
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.5
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.49
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.49
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.49
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.48
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.48
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.48
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.48
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.47
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.47
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.47
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.47
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.46
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.46
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.46
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.46
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.45
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.45
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.45
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.45
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.45
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.44
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.44
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.44
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.44
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.43
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.43
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.4
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.4
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.39
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.39
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.39
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.38
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.38
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.38
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.37
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.36
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.36
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.35
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.34
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.33
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.33
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.33
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.33
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.32
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.32
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.32
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.32
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.32
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.31
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.3
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.3
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.29
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.28
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.28
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.27
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.26
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.25
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.24
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.24
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.24
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.24
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.24
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.23
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.23
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.22
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.22
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.19
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.19
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.18
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.17
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.17
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.16
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.16
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.16
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.15
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.13
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.13
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.13
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.11
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.08
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.08
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.07
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.05
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.05
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.03
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	99.03
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.02
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.0
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.99
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.97
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.96
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.95
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.95
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.95
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.94
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.9
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.9
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.88
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.88
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.87
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.87
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.84
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.83
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.82
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.8
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.79
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.75
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.74
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.74
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.74
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.72
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.66
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.66
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.63
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.6
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.54
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.51
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.49
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.47
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.44
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.43
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.37
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.33
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.31
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.29
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.28
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.24
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.21
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.2
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.11
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.06
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.01
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.97
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.95
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.95
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.9
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.89
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.89
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.77
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.71
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.64
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.43
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.33
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.19
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	97.14
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.99
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.98
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.94
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.78
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.72
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.56
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.51
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	96.3
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	95.81
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.7
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.68
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	94.65
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.27
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.87
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.73
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.4
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.46
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.91
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	91.4
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	90.17
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.65
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	86.54
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	86.17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	85.42
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	84.34
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	84.12
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	81.91

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.77  E-value=1.3e-17  Score=136.48  Aligned_cols=109  Identities=17%  Similarity=0.195  Sum_probs=104.2

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      .|.+..|+..|+|++|+.+|+++|+++|+++.++.++|.++.. .|++++|++.|++||+++|+++.+|..+|.+++. +
T Consensus        17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~   94 (126)
T 4gco_A           17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA-M   94 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-C
Confidence            4778999999999999999999999999999999999999776 9999999999999999999999999999999998 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFL  287 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L  287 (331)
                      |++++|+.+|+++++++|++..++..++.++
T Consensus        95 ~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           95 REWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999998775

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.74  E-value=2.3e-17  Score=138.07  Aligned_cols=116  Identities=10%  Similarity=0.074  Sum_probs=60.6

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd  258 (331)
                      ++.++...+++++|++.|++++..+|+++..++++|.+++. .|++++|+++|+++|+++|+++.+|..+|.++.. .|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~-~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYE-AKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCc
Confidence            34444444555555555555555555555555555555443 5555555555555555555555555555555554 555


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHH
Q 020094          259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEE  296 (331)
Q Consensus       259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa  296 (331)
                      +++|+.+|+++++++|++..++.++|.+|.+.++++++
T Consensus        81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a  118 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGR  118 (150)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSH
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHH
Confidence            55555555555555555555555555555555554443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.73  E-value=2.6e-18  Score=143.89  Aligned_cols=117  Identities=15%  Similarity=0.127  Sum_probs=108.5

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...++|.+|...+++++|+.+|+++++++|+++.++.++|.++.. .|++++|+.+|++|++++|+++.++..+|.++..
T Consensus        33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~  111 (150)
T 4ga2_A           33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EENTDKAVECYRRSVELNPTQKDLVLKIAELLCK  111 (150)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            346899999999999999999999999999999999999999766 9999999999999999999999999999999998


Q ss_pred             HcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          255 AHKDASRAESY-FDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       255 ~~Gd~deA~~y-fekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                       .+++++|..+ +++|++++|+++.++...+.++...|++
T Consensus       112 -~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~d  150 (150)
T 4ga2_A          112 -NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGED  150 (150)
T ss_dssp             -HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCCC
T ss_pred             -cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCcC
Confidence             9998876654 6999999999999999999999888864

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.73  E-value=6.3e-17  Score=142.54  Aligned_cols=123  Identities=13%  Similarity=-0.008  Sum_probs=66.1

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      .++|.++...+++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+.+|+++++++|+++.++..++.++.. .
T Consensus         9 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~   86 (217)
T 2pl2_A            9 LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLK-LGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA-L   86 (217)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-h
Confidence            3445555555555555555555555555555555555555433 5555555555555555555555555555555544 4


Q ss_pred             -----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          257 -----------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       257 -----------Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                                 |++++|+.+|+++++++|++..++.++|.++...|++++|...++
T Consensus        87 ~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~  142 (217)
T 2pl2_A           87 YRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK  142 (217)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence                       555555555555555555555555555555555555555554444

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.72  E-value=4.1e-17  Score=171.52  Aligned_cols=128  Identities=18%  Similarity=0.171  Sum_probs=113.7

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.--..|+|.+|...|++++|+++|+++|+++|+++.+++++|.++.. +|++++|+++|++||+++|+++.+|.++|.+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~-~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            344577889999999999999999999999999999999999988766 8999999999999999999999999889888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.. +|++++|+++|++|++++|++..++.++|.+|.++|++++|.+.++
T Consensus        87 l~~-~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~  135 (723)
T 4gyw_A           87 LKE-MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR  135 (723)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            888 9999999999999999999999999999999999999999988877

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.71  E-value=2.2e-16  Score=139.09  Aligned_cols=127  Identities=11%  Similarity=-0.046  Sum_probs=118.8

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHhCCC
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-----------GDFAKAEELCGRAILANPS  240 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~-----------gd~ekAee~~erALeldP~  240 (331)
                      +.....++|.+|...|++++|+.+|+++++++|+++.++.++|.++.. .           |++++|+..|+++++++|+
T Consensus        38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~  116 (217)
T 2pl2_A           38 DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA-LYRQAEDRERGKGYLEQALSVLKDAERVNPR  116 (217)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hhhhhhhhcccccCHHHHHHHHHHHHHhCcc
Confidence            445567899999999999999999999999999999999999999766 7           9999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       241 d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++.++.+++.++.. .|++++|+.+|++|++++ +++.++.++|.+|...|++++|...++
T Consensus       117 ~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~  175 (217)
T 2pl2_A          117 YAPLHLQRGLVYAL-LGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYA  175 (217)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999988 999999999999999999 999999999999999999999998887

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.70  E-value=5.9e-16  Score=130.09  Aligned_cols=125  Identities=14%  Similarity=0.060  Sum_probs=89.1

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH----------------------------
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK----------------------------  226 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ek----------------------------  226 (331)
                      ...|+|.+|...|++++|+.+|+++++++|+++.++.++|.++.. .+++++                            
T Consensus         7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (184)
T 3vtx_A            7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMD-IGLPNDAIESLKKFVVLDTTSAEAYYILGSANFM   85 (184)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            345788888888888888888888888888888888888877544 555555                            


Q ss_pred             ------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          227 ------AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       227 ------Aee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                            |++++.++++++|++..++..++.++.. .|++++|+.+|+++++++|++..++.++|.+|.+.|++++|...+
T Consensus        86 ~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~  164 (184)
T 3vtx_A           86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYF  164 (184)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHH
Confidence                  4555555555555566666556666665 677777777777777777777777777777777777777776666


Q ss_pred             h
Q 020094          301 E  301 (331)
Q Consensus       301 ~  301 (331)
                      +
T Consensus       165 ~  165 (184)
T 3vtx_A          165 K  165 (184)
T ss_dssp             H
T ss_pred             H
Confidence            5

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.69  E-value=4e-16  Score=163.95  Aligned_cols=128  Identities=20%  Similarity=0.102  Sum_probs=121.5

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.....|+|.+|...|++++|+++|+++|+++|+++.+++++|.++.. +|++++|+++|++||+++|+++.++.++|.+
T Consensus        42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~-~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~  120 (723)
T 4gyw_A           42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE-MQDVQGALQCYTRAIQINPAFADAHSNLASI  120 (723)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            344567999999999999999999999999999999999999999776 9999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.. +|++++|+.+|++|++++|++..++.+++.+|..++++++|.+.++
T Consensus       121 ~~~-~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~  169 (723)
T 4gyw_A          121 HKD-SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK  169 (723)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence            998 9999999999999999999999999999999999999999987665

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.68  E-value=2.3e-15  Score=126.48  Aligned_cols=104  Identities=13%  Similarity=-0.021  Sum_probs=96.0

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....+++.++...++++.|..++++++..+|+++.++..+|.++.. .|++++|+++|+++++++|+++.++.++|.++
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~  151 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY  151 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence            33456788899999999999999999999999999999999999766 99999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~  278 (331)
                      +. +|++++|+.+|++|++++|+++.
T Consensus       152 ~~-~g~~~~A~~~~~~al~~~p~~a~  176 (184)
T 3vtx_A          152 EG-KGLRDEAVKYFKKALEKEEKKAK  176 (184)
T ss_dssp             HH-TTCHHHHHHHHHHHHHTTHHHHH
T ss_pred             HH-CCCHHHHHHHHHHHHhCCccCHH
Confidence            98 99999999999999999997653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=1.4e-15  Score=121.01  Aligned_cols=113  Identities=19%  Similarity=0.085  Sum_probs=106.1

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..+.|..+...+++++|+.+|++++..+|+++.++.++|.++.. .+++++|+.+|+++++++|+++.++..++.++.. 
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-   84 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA-   84 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence            34678999999999999999999999999999999999999776 9999999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHc
Q 020094          256 HKDASRAESYFDQAVKSA------PDDCYVLASYAKFLWDA  290 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ld------P~d~~vl~~LA~~L~~l  290 (331)
                      .|++++|+.+|+++++++      |++..++..+..+..++
T Consensus        85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999      99999999998887653

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.68  E-value=2.7e-15  Score=116.11  Aligned_cols=117  Identities=21%  Similarity=0.242  Sum_probs=110.7

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...++|..+...+++++|+.+|++++..+|+++.++..+|.++.. .+++++|+++|++++.++|+++.++..++.+++.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence            345688999999999999999999999999999999999999766 9999999999999999999999999999999988


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                       .|++++|+.+|+++++++|++..++..++.++...|++
T Consensus        93 -~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           93 -LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             -TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             -hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence             99999999999999999999999999999999998876

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.67  E-value=4e-17  Score=139.37  Aligned_cols=108  Identities=10%  Similarity=0.006  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020094          192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK  271 (331)
Q Consensus       192 A~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~  271 (331)
                      +...|++++.++|+++.+++++|.+++. .|++++|+++|+++++++|+++.+|.++|.++.. .|++++|+.+|++|++
T Consensus        21 ~~~~l~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~~al~   98 (151)
T 3gyz_A           21 SGATLKDINAIPDDMMDDIYSYAYDFYN-KGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAVAFA   98 (151)
T ss_dssp             TSCCTGGGCCSCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHhCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHHHHHh
Confidence            3344555555666666666666666544 6666666666666666666666666666666665 6666666666666666


Q ss_pred             hCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          272 SAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       272 ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++|+++.+|+++|.+|..+|++++|...++
T Consensus        99 l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~  128 (151)
T 3gyz_A           99 LGKNDYTPVFHTGQCQLRLKAPLKAKECFE  128 (151)
T ss_dssp             HSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            666666666666666666666666665554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.67  E-value=1.3e-15  Score=119.26  Aligned_cols=119  Identities=17%  Similarity=0.122  Sum_probs=111.2

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      ...-..++|..+...+++++|+.+|++++..+|+++.++.++|.++.. .+++++|+++|+++++++|+++.++..++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            344467899999999999999999999999999999999999999765 9999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      ++. .|++++|+.+|+++++++|.+..++..++.++...++
T Consensus        94 ~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           94 LEA-MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHH-HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            988 9999999999999999999999999999999988764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.67  E-value=2.5e-15  Score=130.71  Aligned_cols=126  Identities=13%  Similarity=0.098  Sum_probs=119.2

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP-~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      -...+.|.+|...+++++|+.+|++++..+| .+..+++++|.++.. .+++++|+++|++|++++|+++.++..++.++
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADN-IKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHH-hhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            3456889999999999999999999999999 999999999999766 99999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDC-------YVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~-------~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +. +|++++|+.+|+++++++|++.       .++..+|.++...|++++|...++
T Consensus        87 ~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~  141 (228)
T 4i17_A           87 RD-MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK  141 (228)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence            98 9999999999999999999999       669999999999999999999887

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.66  E-value=1.2e-15  Score=127.33  Aligned_cols=114  Identities=16%  Similarity=0.121  Sum_probs=104.3

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....++|..|...+++++|+.+|+++++++|+++.++.++|.++.. .+++++|+.+|+++++++|+++.+|++++.+++
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3466789999999999999999999999999999999999999776 999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD  289 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~  289 (331)
                      . .|++++|+.+|+++++++|++..++...+.....
T Consensus        91 ~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  125 (164)
T 3sz7_A           91 D-MADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK  125 (164)
T ss_dssp             H-TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred             H-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            8 9999999999999999999888866666655443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.66  E-value=8.5e-16  Score=134.43  Aligned_cols=115  Identities=10%  Similarity=0.117  Sum_probs=107.7

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGN----------------YARFLKEVRGDFAKAEELCGRAILANPS  240 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~n----------------LA~~L~~~~gd~ekAee~~erALeldP~  240 (331)
                      ...|..+...|++++|+.+|+++++.+|+++.+++.                +|.++.. .|++++|+.+|+++++++|+
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~   86 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK-NRNYDKAYLFYKELLQKAPN   86 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCC
Confidence            356778889999999999999999999999999999                9999766 99999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       241 d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                      ++.++..+|.+++. .|++++|+.+|+++++++|++..++.++|.+|...++.
T Consensus        87 ~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           87 NVDCLEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            99999999999998 99999999999999999999999999999999877654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.66  E-value=3.8e-15  Score=121.20  Aligned_cols=124  Identities=19%  Similarity=0.098  Sum_probs=113.8

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..++|..+...+++++|+.+|++++..+|+++.++.++|.++.. .+++++|+++|+++++++|+++.++..++.++.. 
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-   93 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMA-   93 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence            45788999999999999999999999999999999999999766 9999999999999999999999999999999988 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKF--LWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~--L~~lG~~eEa~~~~~  301 (331)
                      .|++++|+.+|+++++++|.+..++..++.+  +...+++++|.+.++
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  141 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  141 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence            9999999999999999999999888555554  888899999987665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.65  E-value=6.5e-15  Score=113.69  Aligned_cols=124  Identities=18%  Similarity=0.258  Sum_probs=117.3

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      .+++.+|...+++++|+.+|++++..+|++..++..+|.++.. .+++++|+.+|++++..+|+++.++..++.++.. .
T Consensus         5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~   82 (136)
T 2fo7_A            5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-Q   82 (136)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-T
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHH-hcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-h
Confidence            4678899999999999999999999999999999999998766 8999999999999999999999999999998888 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      |++++|+.+|+++++..|.+..++..++.++...|+.++|...+++
T Consensus        83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  128 (136)
T 2fo7_A           83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK  128 (136)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988773

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.65  E-value=2.5e-15  Score=128.21  Aligned_cols=104  Identities=13%  Similarity=0.054  Sum_probs=97.9

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.....++|..|...|++++|+.+|++++.++|+++.+|.++|.++.. .|++++|+.+|++|++++|+++.+|+++|.+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            334577899999999999999999999999999999999999999776 9999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDC  277 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~  277 (331)
                      +.. .|++++|+.+|+++++++|+..
T Consensus       114 ~~~-lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          114 QLR-LKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence            998 9999999999999999999765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.65  E-value=1.5e-15  Score=147.75  Aligned_cols=127  Identities=11%  Similarity=0.014  Sum_probs=116.1

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd-~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      .-...+++.+|...+++++|+.+|+++|+++|++..+|+++|.++.. .|+ +++|+.+|++||+++|+++.+|.+++.+
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~-~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~  175 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKS-LQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            34467788899999999999999999999999999999999999776 785 9999999999999999999999999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.. .|++++|+.+|++|++++|++..+|.+++.++..+|++++|...++
T Consensus       176 ~~~-~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~  224 (382)
T 2h6f_A          176 VEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD  224 (382)
T ss_dssp             HHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             HHH-ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            888 9999999999999999999999999999999999999999988776

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.64  E-value=1.3e-14  Score=118.52  Aligned_cols=128  Identities=14%  Similarity=0.017  Sum_probs=120.0

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....+++.+|...+++++|+.+|++++..+|+++.++..+|.++.. .+++++|+++|+++++.+|+++.++..++.++
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  120 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ-VQKYDLAVPLLIKVAEANPINFNVRFRLGVAL  120 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence            34567889999999999999999999999999999999999998766 99999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +. .|++++|+.+|+++++.+|.+..++..++.++...|+.++|...++.
T Consensus       121 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  169 (186)
T 3as5_A          121 DN-LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK  169 (186)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HH-cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            88 99999999999999999999999999999999999999999988773

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.63  E-value=1.8e-14  Score=110.58  Aligned_cols=115  Identities=18%  Similarity=0.254  Sum_probs=108.2

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...+++.+|...+++++|+.+|++++..+|+++.++..+|.++.. .+++++|+.+|+++++.+|.++.++..++.+++.
T Consensus        11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999999766 9999999999999999999999999999999998


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                       .|++++|+.+|+++++.+|++..++..++.++...|
T Consensus        90 -~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           90 -QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             -hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence             999999999999999999999999999999987654

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.63  E-value=2.9e-15  Score=122.98  Aligned_cols=112  Identities=13%  Similarity=-0.062  Sum_probs=97.4

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...++|..+...+++++|+.+|++++..+|+++.++.++|.++.. .|++++|+.+|++|+.++|+++.+++.++.++..
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            456788999999999999999999999999999999999988766 9999999999999999999999999999988888


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                       .|++++|+.+|+++++++|+++........+..
T Consensus        99 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  131 (142)
T 2xcb_A           99 -LGDLDGAESGFYSARALAAAQPAHEALAARAGA  131 (142)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence             999999999999999999987765554444443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.63  E-value=4.5e-15  Score=140.33  Aligned_cols=122  Identities=14%  Similarity=0.052  Sum_probs=115.5

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP  239 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---------------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP  239 (331)
                      ...++|.+|+..+++++|+.+|++++.++|++               ..++.++|.++.. .+++++|+.+|++|++++|
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p  227 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKALELDS  227 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC
Confidence            35678999999999999999999999999999               6999999999766 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       240 ~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                      +++.+++++|.+++. .|++++|+.+|++|++++|++..++..++.++..+++.+++++
T Consensus       228 ~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~  285 (336)
T 1p5q_A          228 NNEKGLSRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK  285 (336)
T ss_dssp             TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998 9999999999999999999999999999999999999988853

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.62  E-value=1e-15  Score=128.15  Aligned_cols=103  Identities=9%  Similarity=-0.035  Sum_probs=83.4

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...++|..+...|++++|+.+|++++..+|+++.++.++|.++.. .|++++|+.+|++|+.++|+++.++++++.+++.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            356778888888888888888888888888888888888887655 8888888888888888888888888888887777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCYV  279 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~v  279 (331)
                       .|++++|+.+|+++++++|+++..
T Consensus       102 -~g~~~~A~~~~~~al~~~p~~~~~  125 (148)
T 2vgx_A          102 -XGELAEAESGLFLAQELIANXPEF  125 (148)
T ss_dssp             -TTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred             -cCCHHHHHHHHHHHHHHCcCCCcc
Confidence             888888888888888888766544

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.62  E-value=4e-15  Score=124.61  Aligned_cols=108  Identities=11%  Similarity=-0.027  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       193 ~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                      ..+|++++.++|++..+++++|.++.. .|++++|+.+|++++.++|+++.+|..++.++.. .|++++|+.+|++++++
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQ-SGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHH-cCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhc
Confidence            457899999999999999999999776 9999999999999999999999999999999988 99999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          273 APDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       273 dP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +|+++.+++++|.+|..+|++++|...++.
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~  114 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFL  114 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999988873

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.62  E-value=1.9e-14  Score=109.66  Aligned_cols=111  Identities=16%  Similarity=0.155  Sum_probs=104.0

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..++|..+...+++++|+.+|++++..+|+++.++.++|.++.. .+++++|+.+++++++.+|+++.++..++.++.. 
T Consensus         7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-   84 (118)
T 1elw_A            7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-   84 (118)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence            34678899999999999999999999999999999999999766 9999999999999999999999999999999988 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                      .|++++|+.+|+++++.+|++..++..++.+..
T Consensus        85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            999999999999999999999999999887753

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.62  E-value=3.8e-15  Score=129.55  Aligned_cols=118  Identities=14%  Similarity=0.094  Sum_probs=111.2

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-------NILS  246 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~-------~al~  246 (331)
                      ....++|.+|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+++|+++++++|+++       .++.
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  121 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRD-MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYL  121 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            4566799999999999999999999999999999999999999766 9999999999999999999999       6688


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCc
Q 020094          247 LYADLIWQAHKDASRAESYFDQAVKSAPD--DCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~--d~~vl~~LA~~L~~lG~~  293 (331)
                      .++.+++. .|++++|+.+|+++++++|+  +..++.++|.++...|+.
T Consensus       122 ~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          122 KEGQKFQQ-AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHH-hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            88888888 99999999999999999999  999999999999999887

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.61  E-value=4.7e-15  Score=121.13  Aligned_cols=102  Identities=17%  Similarity=0.103  Sum_probs=95.8

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          198 KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC  277 (331)
Q Consensus       198 rAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~  277 (331)
                      ++..+||+.++.+.+.|..++. .|+|++|+++|++||+++|+++.+|.++|.+++. +|++++|+.+|+++++++|++.
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~   81 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFK-KGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFI   81 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhh
Confidence            4556899999999999999776 9999999999999999999999999999999998 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCchHHHHhhh
Q 020094          278 YVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       278 ~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+|+++|.++..+|++++|...++
T Consensus        82 ~a~~~lg~~~~~~~~~~~A~~~~~  105 (126)
T 4gco_A           82 KGYIRKAACLVAMREWSKAQRAYE  105 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999998887

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.61  E-value=3.5e-14  Score=122.19  Aligned_cols=127  Identities=14%  Similarity=0.161  Sum_probs=103.3

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....++|.+|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+++|+++++.+|+++.++..++.++
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  135 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVV-KEMYKEAKDMFEKALRAGMENGDLFYMLGTVL  135 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            34566778888888888888888888888888888888888877655 88888888888888888888888887787777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .. .|++++|+.+|+++++.+|++..++..++.++...|++++|...++
T Consensus       136 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  183 (243)
T 2q7f_A          136 VK-LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFA  183 (243)
T ss_dssp             HH-TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HH-hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77 8888888888888888888888888888888888888888877766

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.61  E-value=2.6e-14  Score=122.93  Aligned_cols=127  Identities=13%  Similarity=0.001  Sum_probs=120.7

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++.. .|++++|+++|+++++.+|+++.++..++.++
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  169 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVK-LEQPKLALPYLQRAVELNENDTEARFQFGMCL  169 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999766 99999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +. .|++++|+.+|+++++.+|++..++..++.++...|+.++|...++
T Consensus       170 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  217 (243)
T 2q7f_A          170 AN-EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLD  217 (243)
T ss_dssp             HH-HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHH
T ss_pred             HH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            88 9999999999999999999999999999999999999999998887

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.60  E-value=3.2e-15  Score=124.48  Aligned_cols=114  Identities=14%  Similarity=0.097  Sum_probs=103.8

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEA------------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN  238 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~------------------nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld  238 (331)
                      .+.|..++..++|++|+.+|++++.+                  +|.+..++.++|.++.. .|++++|+.+|++||+++
T Consensus        15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHhcC
Confidence            46788999999999999999999999                  77788999999999766 999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCC
Q 020094          239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC-YVLASYAKFLWDAGD  292 (331)
Q Consensus       239 P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~-~vl~~LA~~L~~lG~  292 (331)
                      |+++.+|+.+|.+++. .|++++|+.+|+++++++|++. .+...+..+.....+
T Consensus        94 p~~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           94 ETNEKALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             TTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999998 9999999999999999999998 777777777765543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.60  E-value=2.2e-14  Score=123.92  Aligned_cols=127  Identities=15%  Similarity=0.058  Sum_probs=118.4

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIE--------------------------ANPGNALLLGNYARFLKEVRGDFAKA  227 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~--------------------------~nP~n~~~l~nLA~~L~~~~gd~ekA  227 (331)
                      ....++|.+|...+++++|+.+|++++.                          .+|.++.++..+|.++.. .|++++|
T Consensus        80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A  158 (258)
T 3uq3_A           80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT-KSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-hcCHHHH
Confidence            3467899999999999999999999999                          677788899999999766 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          228 EELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       228 ee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +.+|+++++.+|+++.++..++.++.. .|++++|+.+|+++++.+|++..++..++.++...|+.++|...++.
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999999999999999999988 99999999999999999999999999999999999999999887763

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.60  E-value=9.7e-15  Score=116.35  Aligned_cols=116  Identities=14%  Similarity=0.019  Sum_probs=105.2

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....++|..+...+++++|+.+|++++..+|+++.++.++|.++.. .+++++|+.+|+++++++|+++.++..++.++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            34467889999999999999999999999999999999999999766 99999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHc
Q 020094          253 WQAHKDASRAESYFDQAVKSAPD-----DCYVLASYAKFLWDA  290 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~-----d~~vl~~LA~~L~~l  290 (331)
                      +. .|++++|+.+|+++++++|+     +..+...+..+..+.
T Consensus        88 ~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~  129 (137)
T 3q49_B           88 LE-MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR  129 (137)
T ss_dssp             HH-TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred             HH-HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence            98 99999999999999999997     677777776665544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.60  E-value=1.3e-14  Score=133.90  Aligned_cols=130  Identities=12%  Similarity=0.111  Sum_probs=113.0

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      ....+++.+|...+++++|+.+|+++++.+|+  ++.++.++|.++.. .|++++|+++|+++++++|+++.+|..++.+
T Consensus       178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  256 (365)
T 4eqf_A          178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-SGEFNRAIDAFNAALTVRPEDYSLWNRLGAT  256 (365)
T ss_dssp             -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            34556788899999999999999999999999  99999999999766 9999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQH  305 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~  305 (331)
                      +.. .|++++|+.+|+++++++|++..++.+++.++...|++++|...++....
T Consensus       257 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  309 (365)
T 4eqf_A          257 LAN-GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALS  309 (365)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            998 99999999999999999999999999999999999999999988874433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.59  E-value=1.4e-14  Score=124.42  Aligned_cols=120  Identities=11%  Similarity=0.052  Sum_probs=111.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----------------LLLGNYARFLKEVRGDFAKAEELCGRAILANP  239 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~----------------~~l~nLA~~L~~~~gd~ekAee~~erALeldP  239 (331)
                      ..+.|..+...+++++|+.+|++++...|.++                .++.++|.++.. .+++++|+.+|+++++++|
T Consensus        41 ~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p  119 (198)
T 2fbn_A           41 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVLKIDK  119 (198)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCc
Confidence            56788999999999999999999999999988                899999999765 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094          240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       240 ~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      +++.+++.+|.+++. .|++++|+.+|+++++++|++..++..++.++...++.++++
T Consensus       120 ~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          120 NNVKALYKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             TCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999988 999999999999999999999999999999999988776665

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.59  E-value=1.9e-14  Score=117.54  Aligned_cols=126  Identities=12%  Similarity=0.061  Sum_probs=119.1

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...++|.++...+++++|+.+|++++..+|.++.++..+|.++.. .+++++|+++++++++.+|+++.++..++.++..
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVK-TGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            355788999999999999999999999999999999999999766 9999999999999999999999999999999988


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                       .|++++|+.+|+++++.+|.+..++..++.++...|++++|...+++
T Consensus        89 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  135 (186)
T 3as5_A           89 -VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI  135 (186)
T ss_dssp             -HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence             99999999999999999999999999999999999999999988873

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.59  E-value=1.1e-14  Score=135.89  Aligned_cols=127  Identities=20%  Similarity=0.196  Sum_probs=92.3

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....+++.+|...+++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+++|+++++++|+++.++..++.++
T Consensus       237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE-KGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence            34456677777777777777777777777777777777777776554 77777777777777777777777777777666


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .. .|++++|+.+|+++++++|++..++.+++.++.+.|++++|...++
T Consensus       316 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  363 (388)
T 1w3b_A          316 RE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK  363 (388)
T ss_dssp             HT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            66 7777777777777777777777777777777777777777776666

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.59  E-value=2.2e-14  Score=116.84  Aligned_cols=105  Identities=19%  Similarity=0.267  Sum_probs=92.9

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-------NILSLYA  249 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~-------~al~~yA  249 (331)
                      -|++..|+..++|++|+.+|+++|+++|+++.++.++|.++.. .|++++|+++|++||+++|++.       .++.++|
T Consensus        12 ~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           12 KDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            4789999999999999999999999999999999999999776 9999999999999999999763       4677788


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYA  284 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA  284 (331)
                      .++.. ++++++|+.+|++++...| ++++...+.
T Consensus        91 ~~~~~-~~~~~~A~~~~~kal~~~~-~~~~~~~l~  123 (127)
T 4gcn_A           91 NAFQK-QNDLSLAVQWFHRSLSEFR-DPELVKKVK  123 (127)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHSC-CHHHHHHHH
T ss_pred             HHHHH-cCCHHHHHHHHHHHHhhCc-CHHHHHHHH
Confidence            87777 9999999999999999988 555554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.59  E-value=8.8e-15  Score=122.69  Aligned_cols=116  Identities=10%  Similarity=0.135  Sum_probs=105.0

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA--SRA  262 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~--deA  262 (331)
                      ..+++++|+.+|++++..+|+++.++..+|.++.. .+++++|+.+|+++++++|+++.++..++.+++...|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLW-QNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            45889999999999999999999999999999766 999999999999999999999999999999944339998  999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       263 ~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.+|+++++++|++..+++.+|.++...|++++|...++
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  139 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ  139 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            999999999999999999999999999999999998887

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.59  E-value=4.9e-15  Score=121.56  Aligned_cols=106  Identities=8%  Similarity=-0.059  Sum_probs=98.4

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020094          194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA  273 (331)
Q Consensus       194 e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ld  273 (331)
                      ..|++++.++|++...++.+|..+.. .|++++|+.+|++++.++|+++.+|..++.+++. .|++++|+.+|+++++++
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~   82 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQ-AGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALMD   82 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcC
Confidence            57888999999999999999999776 9999999999999999999999999999999998 999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          274 PDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       274 P~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |+++.+++++|.+|..+|++++|.+.++
T Consensus        83 p~~~~~~~~lg~~~~~~g~~~~A~~~~~  110 (142)
T 2xcb_A           83 INEPRFPFHAAECHLQLGDLDGAESGFY  110 (142)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999998887

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.58  E-value=1.2e-14  Score=117.81  Aligned_cols=101  Identities=12%  Similarity=-0.020  Sum_probs=89.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..++|..+...|++++|+.+|+++++.+|+++.+++.+|.++.. .|++++|+.+|++|++++|+++.++..++.++.. 
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~-   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence            45788999999999999999999999999999999999999776 9999999999999999999999999999999988 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH
Q 020094          256 HKDASRAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~  278 (331)
                      .|++++|+.+|+++++++|++..
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHHC-------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCCC
Confidence            99999999999999999997653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.58  E-value=1.1e-14  Score=141.72  Aligned_cols=125  Identities=12%  Similarity=0.036  Sum_probs=116.0

Q ss_pred             CCcccccchHHHHHhCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHG-SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd-~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA  249 (331)
                      .+.-...|++.+|...++ +++|+.+|+++|+++|+++.+|+++|.++.. .|++++|+.+|++||+++|++..+|.+++
T Consensus       129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~-~g~~~eAl~~~~kal~ldP~~~~a~~~lg  207 (382)
T 2h6f_A          129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQ  207 (382)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCccCHHHHHHHH
Confidence            455567889999999996 9999999999999999999999999999766 99999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCchHHH
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD-AGDDEEEE  297 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~-lG~~eEa~  297 (331)
                      .++.. .|++++|+.+|+++|+++|++..+|.+++.+|.. .+..++|.
T Consensus       208 ~~~~~-~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~  255 (382)
T 2h6f_A          208 WVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV  255 (382)
T ss_dssp             HHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             HHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence            99998 9999999999999999999999999999999999 55547773

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.58  E-value=3.6e-14  Score=129.87  Aligned_cols=126  Identities=11%  Similarity=0.012  Sum_probs=82.4

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....++|.+|...+++++|+.+|++++..+|+++.++.++|.++.. .|++++|+.+|+++++++|+++.++..++.++.
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~  296 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQSEEAVAAYRRALELQPGYIRSRYNLGISCI  296 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            3445666666666666666666666666666666666666666544 666666666666666666666666666666666


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAPDD-----------CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d-----------~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      . .|++++|+.+|+++++++|++           ..+|..++.++..+|+.+++....+
T Consensus       297 ~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  354 (368)
T 1fch_A          297 N-LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADA  354 (368)
T ss_dssp             H-HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHT
T ss_pred             H-CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHH
Confidence            5 666666666666666666655           5666666666666666666665544

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.1e-13  Score=110.32  Aligned_cols=116  Identities=16%  Similarity=0.062  Sum_probs=106.8

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL  247 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~  247 (331)
                      .......++|..+...+++++|+.+|+++++.+|++   ..++.++|.++.. .+++++|+.+|+++++++|+++.++..
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            344557789999999999999999999999999998   8899999999766 999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       248 yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                      ++.+++. .|++++|+.+|+++++++|++..++..++.+..
T Consensus       105 ~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          105 RSQALEK-LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            9999988 999999999999999999999999988887754

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.57  E-value=6.6e-14  Score=122.01  Aligned_cols=126  Identities=18%  Similarity=0.233  Sum_probs=110.7

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL--ANPSDGNILSLYADL  251 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALe--ldP~d~~al~~yA~l  251 (331)
                      ....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++.. .|++++|+++|+++++  .+|.++.++..++.+
T Consensus        72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~  150 (252)
T 2ho1_A           72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLV  150 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHH
Confidence            3466788889999999999999999999999999999999888665 8999999999999998  888888888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++. .|++++|+.+|+++++.+|.+..++..++.++...|++++|...++
T Consensus       151 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  199 (252)
T 2ho1_A          151 SLQ-MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYD  199 (252)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            887 8999999999999999999889999999999999999999888777

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.57  E-value=7.7e-14  Score=117.96  Aligned_cols=122  Identities=16%  Similarity=0.113  Sum_probs=61.0

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH-  256 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~-  256 (331)
                      ++|.+|...+++++|+.+|+++++.+|+++.++..+|.++.. .|++++|+++|+++++++|++..++..++.++.. . 
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~   90 (225)
T 2vq2_A           13 QLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQY-LKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RL   90 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TT
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hc
Confidence            344455555555555555555555555555555555544333 4555555555555555555555555444444444 4 


Q ss_pred             CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          257 KDASRAESYFDQAVK--SAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       257 Gd~deA~~yfekAL~--ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |++++|+.+|+++++  ..|.+..++..++.++...|++++|...++
T Consensus        91 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  137 (225)
T 2vq2_A           91 NRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLK  137 (225)
T ss_dssp             CCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            555555555555555  333444455555555555555555544443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.57  E-value=1.5e-14  Score=127.16  Aligned_cols=124  Identities=10%  Similarity=0.104  Sum_probs=111.7

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN----ILSLYAD  250 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~----al~~yA~  250 (331)
                      ...++|.++...+++++|+.+|+++++.+|+++.++..+|.++.. .|++++|+++|+++++ .|.++.    ++..++.
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~lg~   82 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYE-LAKYDLAQKDIETYFS-KVNATKAKSADFEYYGK   82 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHH-TTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHHHh-ccCchhHHHHHHHHHHH
Confidence            356789999999999999999999999999999999999998665 9999999999999999 554443    4778888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +++. .|++++|+.+|+++++++|.+..++..+|.++...|++++|...++
T Consensus        83 ~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  132 (272)
T 3u4t_A           83 ILMK-KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME  132 (272)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred             HHHH-cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            8888 9999999999999999999999999999999999999999998887

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.57  E-value=6.1e-14  Score=122.25  Aligned_cols=128  Identities=13%  Similarity=0.119  Sum_probs=120.3

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....++|.+|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+++|+++++++|++..++..++.++.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQT-EMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999766 999999999999999999999999999999998


Q ss_pred             HHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          254 QAHKDASRAESYFDQAVK--SAPDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~--ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      . .|++++|+.+|+++++  ..|.+..++..++.++...|++++|...+++.
T Consensus       117 ~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  167 (252)
T 2ho1_A          117 E-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKS  167 (252)
T ss_dssp             H-TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             H-HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8 9999999999999999  88999999999999999999999999888743

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.57  E-value=5.2e-14  Score=120.22  Aligned_cols=122  Identities=11%  Similarity=0.024  Sum_probs=112.9

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..++|..|...+++++|+.+|++++  +| ++.++.++|.++.. .|++++|+++|+++++++|+++.++.++|.+++. 
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTI-LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-
Confidence            4578999999999999999999995  44 78999999999766 9999999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDC----------------YVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~----------------~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      .|++++|+.+|++++++.|.+.                .+++++|.++...|++++|...++.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  146 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL  146 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999999999999988776                9999999999999999999887773

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.57  E-value=8.1e-14  Score=117.83  Aligned_cols=126  Identities=13%  Similarity=0.077  Sum_probs=113.9

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-GDFAKAEELCGRAIL--ANPSDGNILSLYADL  251 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~-gd~ekAee~~erALe--ldP~d~~al~~yA~l  251 (331)
                      ...+++.+|...+++++|+.+|++++..+|+++.++..+|.++.. . +++++|+.+|+++++  .+|.+..++..++.+
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~  122 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAYFDKALADPTYPTPYIANLNKGIC  122 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHH
Confidence            456788999999999999999999999999999999999988765 8 999999999999999  677778999889888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +.. .|++++|+.+|+++++.+|.+..++..++.++...|++++|...+++
T Consensus       123 ~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  172 (225)
T 2vq2_A          123 SAK-QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK  172 (225)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            888 99999999999999999999999999999999999999999887773

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.57  E-value=7.1e-14  Score=130.35  Aligned_cols=126  Identities=20%  Similarity=0.192  Sum_probs=108.1

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....+++.++...+++++|+.+|++++..+|+++.++.++|.++.. .|++++|+++|+++++++|+++.++..++.++.
T Consensus       204 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T 1w3b_A          204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYE-QGLIDLAIDTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            3456778888888888888888888888888888888888888665 888888999999998888888888888888887


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      . .|++++|+.+|+++++++|.+..++.+++.++...|+.++|...++
T Consensus       283 ~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  329 (388)
T 1w3b_A          283 E-KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR  329 (388)
T ss_dssp             H-HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             H-cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7 8889999999999998888888888888988888888888888777

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.56  E-value=1.1e-13  Score=123.69  Aligned_cols=128  Identities=15%  Similarity=0.063  Sum_probs=118.4

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.....++|.+|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+++|+++++++|+++.++..++.+
T Consensus       171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  249 (327)
T 3cv0_A          171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEALDAYNRALDINPGYVRVMYNMAVS  249 (327)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            345677899999999999999999999999999999999999999766 9999999999999999999999999999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPD------------DCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~------------d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.. .|++++|+.+|+++++++|+            +..++..++.++...|+.++|...++
T Consensus       250 ~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  310 (327)
T 3cv0_A          250 YSN-MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA  310 (327)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHH-hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            888 99999999999999999998            78999999999999999999988776

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.56  E-value=1.9e-13  Score=107.67  Aligned_cols=114  Identities=11%  Similarity=0.003  Sum_probs=102.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYA  249 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~---~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA  249 (331)
                      ..+.|..+...+++++|+.+|++++..+|+++   .+++.+|.++.. .|++++|+.+|+++++.+|++   +.+++.++
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la   83 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHHHH
Confidence            35788999999999999999999999999998   799999999776 999999999999999999999   89999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                      .+++. .|++++|+.+|+++++..|++..+......+-...+
T Consensus        84 ~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~  124 (129)
T 2xev_A           84 LSQYG-EGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRL  124 (129)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC-
T ss_pred             HHHHH-cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHh
Confidence            99998 999999999999999999999988776666554443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.55  E-value=7e-14  Score=139.31  Aligned_cols=130  Identities=12%  Similarity=0.066  Sum_probs=122.1

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.....++|.+|...+++++|+++|+++++++|+++.++.++|.++.. .|++++|+++|++|++++|+++.++.+++.+
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  100 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLLQQASDAAPEHPGIALWLGHA  100 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            344577899999999999999999999999999999999999999766 9999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCchHHHHhhhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA---GDDEEEEQDNEES  303 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l---G~~eEa~~~~~~~  303 (331)
                      +.. .|++++|+.+|+++++++|++..++.+++.++...   |+.++|...+++.
T Consensus       101 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A          101 LED-AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            998 99999999999999999999999999999999999   9999998877733

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.55  E-value=2.8e-14  Score=140.66  Aligned_cols=122  Identities=12%  Similarity=0.093  Sum_probs=111.2

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS  240 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---------------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~  240 (331)
                      ..++|..|+..++|++|+.+|+++++++|++               ..+++++|.++.. .++|++|+.+|++||+++|+
T Consensus       271 ~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p~  349 (457)
T 1kt0_A          271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-LREYTKAVECCDKALGLDSA  349 (457)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCc
Confidence            4578899999999999999999999999999               6899999999766 99999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094          241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQD  299 (331)
Q Consensus       241 d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~  299 (331)
                      ++.+|+++|.+++. ++++++|+.+|++|++++|++..++..++.++.++++.+++++.
T Consensus       350 ~~~a~~~~g~a~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          350 NEKGLYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998 99999999999999999999999999999999999999888753

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.55  E-value=1.1e-13  Score=123.85  Aligned_cols=126  Identities=12%  Similarity=0.068  Sum_probs=103.6

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN---------PSDGNI  244 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld---------P~d~~a  244 (331)
                      ....++|.+|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|++++++.         |.++.+
T Consensus       160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  238 (330)
T 3hym_B          160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQ-NGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL  238 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence            3456678888888888888888888888888888888888887665 888888888888888876         667778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +..++.++.. .|++++|+.+|+++++++|++..++..++.++...|++++|...++
T Consensus       239 ~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  294 (330)
T 3hym_B          239 LNNLGHVCRK-LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH  294 (330)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHH-hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence            8788887777 8888888888888888888888888888888888888888887777

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.55  E-value=2.1e-14  Score=148.35  Aligned_cols=128  Identities=9%  Similarity=-0.055  Sum_probs=122.1

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      .+.....++|.+|...+++++|+.+|+++++.+|+++.+++++|.++.. .|++++|+++|++|++++|+++.++.+++.
T Consensus       431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~lg~  509 (681)
T 2pzi_A          431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-TGDYDSATKHFTEVLDTFPGELAPKLALAA  509 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred             cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            4555678899999999999999999999999999999999999999776 999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++.. .|++++ +.+|++|++++|++..+++++|.++..+|++++|...++
T Consensus       510 ~~~~-~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~  558 (681)
T 2pzi_A          510 TAEL-AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD  558 (681)
T ss_dssp             HHHH-HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHH-cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9998 999999 999999999999999999999999999999999999998

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.55  E-value=1.2e-13  Score=127.48  Aligned_cols=125  Identities=18%  Similarity=0.125  Sum_probs=77.1

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---------------  239 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP---------------  239 (331)
                      ...++|.+|...+++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|+++++++|               
T Consensus       101 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~  179 (365)
T 4eqf_A          101 AWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTN-TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGL  179 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCHHHHCC----------
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHc-cccHHHHHHHHHHHHHhCccchHHHhhhccchHH
Confidence            345666666666666666666666666666666666666665443 5555555555555444433               


Q ss_pred             -----------------------------C--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          240 -----------------------------S--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       240 -----------------------------~--d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                                                   +  ++.++..++.++.. .|++++|+.+|+++++++|++..++.+++.++.
T Consensus       180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  258 (365)
T 4eqf_A          180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-SGEFNRAIDAFNAALTVRPEDYSLWNRLGATLA  258 (365)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence                                         2  55566666665555 666666666666666666666666666666666


Q ss_pred             HcCCchHHHHhhh
Q 020094          289 DAGDDEEEEQDNE  301 (331)
Q Consensus       289 ~lG~~eEa~~~~~  301 (331)
                      ..|++++|...++
T Consensus       259 ~~g~~~~A~~~~~  271 (365)
T 4eqf_A          259 NGDRSEEAVEAYT  271 (365)
T ss_dssp             HTTCHHHHHHHHH
T ss_pred             HcCCHHHHHHHHH
Confidence            6666666666555

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=6.6e-14  Score=120.84  Aligned_cols=129  Identities=14%  Similarity=0.135  Sum_probs=119.0

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAIL---------  236 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n-------~~~l~nLA~~L~~~~gd~ekAee~~erALe---------  236 (331)
                      .....++|.+|...+++++|+.+|++++..+|++       +.++..+|.++.. .+++++|+++|+++++         
T Consensus        38 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~  116 (258)
T 3uq3_A           38 ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHK-LGDLKKTIEYYQKSLTEHRTADILT  116 (258)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHhcCchhHHHH
Confidence            3456789999999999999999999999999987       7999999999766 9999999999999999         


Q ss_pred             -----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094          237 -----------------ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQD  299 (331)
Q Consensus       237 -----------------ldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~  299 (331)
                                       .+|+++.++..++.+++. .|++++|+.+|+++++.+|.+..++..+|.++...|++++|...
T Consensus       117 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  195 (258)
T 3uq3_A          117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD  195 (258)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence                             777888999999999988 99999999999999999999999999999999999999999988


Q ss_pred             hhhh
Q 020094          300 NEES  303 (331)
Q Consensus       300 ~~~~  303 (331)
                      ++..
T Consensus       196 ~~~a  199 (258)
T 3uq3_A          196 CNKA  199 (258)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8733

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.54  E-value=9.2e-14  Score=107.73  Aligned_cols=114  Identities=18%  Similarity=0.236  Sum_probs=104.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-------GNILSLY  248 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d-------~~al~~y  248 (331)
                      ..++|..+...+++++|+.+|++++..+|.++.++.++|.++.. .+++++|+.+|++++.++|++       +.++..+
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l   85 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI   85 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence            34688999999999999999999999999999999999999766 999999999999999999987       9999999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      +.+++. .|++++|+.+|+++++++| +..++..++.++..+++
T Consensus        86 a~~~~~-~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~  127 (131)
T 1elr_A           86 GNSYFK-EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE  127 (131)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            999988 9999999999999999999 78888888888776544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.54  E-value=2.3e-14  Score=141.49  Aligned_cols=124  Identities=12%  Similarity=0.024  Sum_probs=79.3

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR---------GDFAKAEELCGRAILANPSDGNIL  245 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~---------gd~ekAee~~erALeldP~d~~al  245 (331)
                      ...++|.+|...+++++|+.+|+++++++|+ +.++.++|.++.. .         +++++|+++|++|++++|+++.+|
T Consensus       139 a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  216 (474)
T 4abn_A          139 AWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLRQ-LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW  216 (474)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHTT-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHH-hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence            4455666666666666666666666666666 5666666665443 5         666666666666666666666666


Q ss_pred             HHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          246 SLYADLIWQAH--------KDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       246 ~~yA~ll~~~~--------Gd~deA~~yfekAL~ldP---~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..++.++.. .        |++++|+.+|++|++++|   ++..+|.++|.+|...|++++|...++
T Consensus       217 ~~lg~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  282 (474)
T 4abn_A          217 YILGNAYLS-LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS  282 (474)
T ss_dssp             HHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHH-HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            666666655 5        666666666666666666   666666666666666666666665554

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.54  E-value=1.2e-13  Score=123.46  Aligned_cols=131  Identities=13%  Similarity=0.023  Sum_probs=121.2

Q ss_pred             cccccchHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       173 ~~~~~N~A~~y~s~g-d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      .....+++.+|...+ ++++|+.+|++++..+|+++.++..+|.++.. .|++++|+++|+++++++|++..++..++.+
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~  168 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAV-ESEHDQAMAAYFTAAQLMKGCHLPMLYIGLE  168 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            345678899999999 99999999999999999999999999999766 9999999999999999999999999999998


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQH  305 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~  305 (331)
                      +.. .|++++|+.+|+++++.+|++..++..++.++...|++++|...+++...
T Consensus       169 ~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  221 (330)
T 3hym_B          169 YGL-TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALE  221 (330)
T ss_dssp             HHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHH-HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            888 99999999999999999999999999999999999999999988874443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=2.4e-13  Score=118.99  Aligned_cols=125  Identities=9%  Similarity=0.036  Sum_probs=112.7

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....++|.+|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|+++++++|+++.++..++.+++
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~  122 (275)
T 1xnf_A           44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  122 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCccccHHHHHHHHHHH
Confidence            4567889999999999999999999999999999999999999766 999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      . .|++++|+.+|+++++++|++......++.+ ...|+.++|...++
T Consensus       123 ~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~  168 (275)
T 1xnf_A          123 Y-GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLK  168 (275)
T ss_dssp             H-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred             H-hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHH
Confidence            8 9999999999999999999998766666544 55689999987775

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.53  E-value=3.8e-14  Score=139.96  Aligned_cols=128  Identities=9%  Similarity=-0.012  Sum_probs=120.8

Q ss_pred             CcccccchHHHHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~-ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      ......++|.+|...+++ ++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|++|++++|+ +.++..++.
T Consensus       101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~-~~~~~~lg~  178 (474)
T 4abn_A          101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWK-KGDVTSAHTCFSGALTHCKN-KVSLQNLSM  178 (474)
T ss_dssp             CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCCC-HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence            455678999999999999 999999999999999999999999999776 99999999999999999999 799999999


Q ss_pred             HHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCchHHHHhhhh
Q 020094          251 LIWQAH---------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA--------GDDEEEEQDNEE  302 (331)
Q Consensus       251 ll~~~~---------Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l--------G~~eEa~~~~~~  302 (331)
                      +++. .         |++++|+.+|++|++++|++..+|.++|.+|...        |++++|...++.
T Consensus       179 ~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~  246 (474)
T 4abn_A          179 VLRQ-LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQ  246 (474)
T ss_dssp             HHTT-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHH-hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence            9988 8         9999999999999999999999999999999999        999999988873

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.53  E-value=2.3e-14  Score=113.83  Aligned_cols=106  Identities=16%  Similarity=0.197  Sum_probs=91.8

Q ss_pred             CCCcHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094          186 NHGSSSTDAYYEKMIEA---NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (331)
Q Consensus       186 ~gd~ekA~e~yerAL~~---nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA  262 (331)
                      .|++++|+.+|++++++   +|+++.++.++|.++.. .|++++|+.+|+++++++|+++.++.+++.+++. .|++++|
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A   80 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG   80 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence            47899999999999999   69999999999999776 9999999999999999999999999999999998 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       263 ~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                      +.+|+++++..|++..+......+..-.+..
T Consensus        81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l  111 (117)
T 3k9i_A           81 VELLLKIIAETSDDETIQSYKQAILFYADKL  111 (117)
T ss_dssp             HHHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            9999999999999998876555555444433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.53  E-value=8.2e-14  Score=122.48  Aligned_cols=124  Identities=12%  Similarity=0.123  Sum_probs=113.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..++|.+|...+++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+++|+++++++|+++.++..++..++. 
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-  154 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYN-KGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY-  154 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-
Confidence            56899999999999999999999999999999999999999766 9999999999999999999999999999856666 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---chHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD---DEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~---~eEa~~~~~  301 (331)
                      .+++++|+.+|+++++++|++..++..++.++...++   .++|...++
T Consensus       155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  203 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE  203 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence            7799999999999999999999999999999999998   766776665

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.52  E-value=1.8e-13  Score=125.19  Aligned_cols=124  Identities=10%  Similarity=0.093  Sum_probs=115.9

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      +++.++ ..+++++|+.+|++++..+|+  ++.++.++|.++.. .|++++|+.+|+++++++|+++.++..++.++.. 
T Consensus       187 ~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-  263 (368)
T 1fch_A          187 ILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL-SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-  263 (368)
T ss_dssp             TTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-
Confidence            566666 889999999999999999999  89999999999766 9999999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQ  304 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~  304 (331)
                      .|++++|+.+|+++++++|++..++..+|.++...|++++|...++...
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  312 (368)
T 1fch_A          264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL  312 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998887433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.52  E-value=6.9e-14  Score=134.96  Aligned_cols=122  Identities=18%  Similarity=0.125  Sum_probs=114.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIE----------------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP  239 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~----------------~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP  239 (331)
                      ..++|..|...+++++|+.+|+++++                .+|.++.++.++|.++.. .+++++|+++|++|++++|
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHhCc
Confidence            45789999999999999999999999                788899999999999766 9999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHh
Q 020094          240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQD  299 (331)
Q Consensus       240 ~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~  299 (331)
                      +++.+++.+|.+++. +|++++|+.+|++|++++|++..++..++.++..+++.+++.+.
T Consensus       305 ~~~~a~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~  363 (370)
T 1ihg_A          305 SNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA  363 (370)
T ss_dssp             TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hhHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999998 99999999999999999999999999999999999988877643

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.51  E-value=3.2e-14  Score=120.48  Aligned_cols=124  Identities=18%  Similarity=0.075  Sum_probs=100.6

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..+.|..+...|++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+.+|++++..+| ++.++..++.+.+..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLE-TKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHH-TTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence            34677888889999999999999999999999999999988665 8999999999998888888 877765555443332


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++..+|+.+|+++++++|++..+++.+|.++...|++++|...++
T Consensus        87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~  132 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW  132 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            3344567888888888888888888888888888888888887776

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.51  E-value=2.8e-13  Score=102.52  Aligned_cols=102  Identities=12%  Similarity=0.023  Sum_probs=84.3

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYAD  250 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~--d~~al~~yA~  250 (331)
                      .....++|.++...+++++|+.+|+++++.+|.++.++.++|.++.. .+++++|+++|+++++++|+  +..++..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            34556788888888888888888888888888888888888888665 88888888888888888888  8888888888


Q ss_pred             HHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 020094          251 LIWQAH-KDASRAESYFDQAVKSAPDD  276 (331)
Q Consensus       251 ll~~~~-Gd~deA~~yfekAL~ldP~d  276 (331)
                      ++.. . |++++|+.+|++++...|.+
T Consensus        85 ~~~~-~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           85 ALRY-IEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHTT-CSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHH-HhCCHHHHHHHHHHHhhcccCC
Confidence            7777 8 88888888888888888754

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.51  E-value=3.4e-13  Score=121.38  Aligned_cols=125  Identities=13%  Similarity=0.047  Sum_probs=117.2

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..++|..+...|++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|+++++++|+++.++..++.+++. 
T Consensus         6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-   83 (359)
T 3ieg_A            6 HLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA-MGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-   83 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-
Confidence            34678999999999999999999999999999999999999776 9999999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCchHHHHhhhh
Q 020094          256 HKDASRAESYFDQAVKSAP---DDCYVLASY------------AKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP---~d~~vl~~L------------A~~L~~lG~~eEa~~~~~~  302 (331)
                      .|++++|+.+|+++++++|   ++..++..+            +.++...|++++|...++.
T Consensus        84 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  145 (359)
T 3ieg_A           84 QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK  145 (359)
T ss_dssp             HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            9999999999999999999   899988888            7999999999999888773

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.51  E-value=2.9e-14  Score=141.79  Aligned_cols=124  Identities=19%  Similarity=0.098  Sum_probs=111.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..++|..|...+++++|+++|+++++++|+++.++.++|.++.. .+++++|+++|++|++++|+++.++.++|.+++. 
T Consensus         9 ~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-   86 (477)
T 1wao_1            9 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMA-   86 (477)
T ss_dssp             SSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence            34667778889999999999999999999999999999999766 9999999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKF--LWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~--L~~lG~~eEa~~~~~  301 (331)
                      +|++++|+.+|++|++++|++..++..++.+  +.+.+++++|.+.++
T Consensus        87 ~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           87 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999988  888899988887765

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.50  E-value=7.7e-13  Score=122.55  Aligned_cols=125  Identities=10%  Similarity=-0.069  Sum_probs=110.1

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK-EVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~-~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      +.....+++.+|...|++++|+.+|+++++.+|++.......+.+.. ...+++++|+.+|+++++.+|+++.+++.++.
T Consensus       129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~  208 (291)
T 3mkr_A          129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA  208 (291)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            44567789999999999999999999999999998765544443222 22488999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      ++.. .|++++|+.+|+++++++|+++.++.+++.++...|+..++.
T Consensus       209 ~~~~-~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa  254 (291)
T 3mkr_A          209 CHMA-QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT  254 (291)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence            9998 999999999999999999999999999999999999997753

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.50  E-value=1.3e-13  Score=120.36  Aligned_cols=123  Identities=10%  Similarity=0.078  Sum_probs=106.0

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..++|.+|...+++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|+++++++|+++.++.+++.+++. 
T Consensus        57 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-  134 (208)
T 3urz_A           57 ATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYL-  134 (208)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-
Confidence            44599999999999999999999999999999999999999776 9999999999999999999999999999999876 


Q ss_pred             cC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~G--d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+  +.+++...|++++..+| ....++.++.++...+++++|...++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~  181 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQ  181 (208)
T ss_dssp             HHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHH
Confidence            44  45677888888865433 34577888999999999999998887

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.49  E-value=3.6e-13  Score=123.94  Aligned_cols=126  Identities=12%  Similarity=0.002  Sum_probs=83.3

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....++|..+...|++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+.+|++++..+|++...+...+..+.
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~  196 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL  196 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999765 899988877766665555533333322222222


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      . .++.++|+..|+++++++|++..+++++|.+|...|++++|...++
T Consensus       197 ~-~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~  243 (287)
T 3qou_A          197 X-QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF  243 (287)
T ss_dssp             H-HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             h-hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            2 4444445555555555555555555555555555555555544443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.49  E-value=1.2e-13  Score=116.95  Aligned_cols=128  Identities=9%  Similarity=-0.029  Sum_probs=111.9

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.....++|.+|...|++++|+.+|++++..+| ++.++..++.+......+..+|+.+|+++++++|+++.+++.++.+
T Consensus        39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~  117 (176)
T 2r5s_A           39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQ  117 (176)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            444567899999999999999999999999999 8887776665533323344568999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDD--CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d--~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.. .|++++|+.+|+++++++|+.  ..++..++.++...|+.+++...++
T Consensus       118 ~~~-~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~  168 (176)
T 2r5s_A          118 YNQ-VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR  168 (176)
T ss_dssp             HHH-TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHH-cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            998 999999999999999999965  6699999999999999999988876

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.49  E-value=5.5e-14  Score=123.16  Aligned_cols=116  Identities=17%  Similarity=0.141  Sum_probs=108.1

Q ss_pred             hCCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020094          185 NNHGSSSTDAYYEKMIEA----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~----nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d  260 (331)
                      ..+++++|+.+|+++++.    +|.++.++..+|.++.. .|++++|+.+|+++++++|+++.++..++.+++. .|+++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~   94 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDS-LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFD   94 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHH-cccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHH
Confidence            457899999999999998    35678899999999766 9999999999999999999999999999999998 99999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          261 RAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       261 eA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +|+.+|+++++++|.+..++..+|.++...|++++|...++.
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  136 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  136 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            999999999999999999999999999999999999988873

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.48  E-value=4.9e-13  Score=106.20  Aligned_cols=96  Identities=13%  Similarity=0.003  Sum_probs=90.3

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094          204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY  283 (331)
Q Consensus       204 P~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~L  283 (331)
                      |.++..+..+|..++. .|++++|+.+|+++++++|+++.+|.+++.+++. .|++++|+.+|+++++++|++..+++.+
T Consensus         1 p~~a~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (126)
T 3upv_A            1 SMKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRK   78 (126)
T ss_dssp             CHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             CchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            4456788899988776 9999999999999999999999999999999998 9999999999999999999999999999


Q ss_pred             HHHHHHcCCchHHHHhhh
Q 020094          284 AKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       284 A~~L~~lG~~eEa~~~~~  301 (331)
                      |.++...|++++|...++
T Consensus        79 g~~~~~~~~~~~A~~~~~   96 (126)
T 3upv_A           79 ATAQIAVKEYASALETLD   96 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhCHHHHHHHHH
Confidence            999999999999998887

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.48  E-value=5.3e-13  Score=120.06  Aligned_cols=126  Identities=14%  Similarity=0.066  Sum_probs=98.3

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH--
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---SDGNILSLY--  248 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP---~d~~al~~y--  248 (331)
                      ....++|.+|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|+++++++|   +++.++..+  
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  116 (359)
T 3ieg_A           38 IAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK-QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVK  116 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCcccChHHHHHHHHH
Confidence            3456778888888888888888888888888888888888877655 7888888888888888888   777777666  


Q ss_pred             ----------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          249 ----------ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       249 ----------A~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                                +.+++. .|++++|+.+|+++++.+|.+..++..++.++...|++++|...++
T Consensus       117 ~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~  178 (359)
T 3ieg_A          117 ADEMQRLRSQALDAFD-GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK  178 (359)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                      455555 7888888888888888888778888888888888888877777666

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.48  E-value=4.6e-13  Score=119.20  Aligned_cols=131  Identities=14%  Similarity=-0.005  Sum_probs=115.9

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNIL  245 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al  245 (331)
                      ..-...+.|..+...+++++|+.+|++++..+|++   +.+++.+|.+++. .|++++|+.+|+++++++|++   +.++
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQ-NKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            44557889999999999999999999999999999   9999999999776 999999999999999998854   5678


Q ss_pred             HHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCchHHHHhhh
Q 020094          246 SLYADLIWQA-------HKDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       246 ~~yA~ll~~~-------~Gd~deA~~yfekAL~ldP~d~~vl-----------------~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.++.+++..       .|++++|+.+|+++++.+|++..+.                 +.+|.+|...|++++|...++
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            7777766532       7999999999999999999887666                 888999999999999999887


Q ss_pred             hh
Q 020094          302 ES  303 (331)
Q Consensus       302 ~~  303 (331)
                      ..
T Consensus       173 ~~  174 (261)
T 3qky_A          173 AV  174 (261)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.48  E-value=2.8e-13  Score=124.75  Aligned_cols=128  Identities=13%  Similarity=0.144  Sum_probs=111.9

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~-~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      .....+++.++...+++++|..+|+++++++|.++. ++.+|+.++.. .|++++|+.+|++|++.+|.+..+|..++.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~  177 (308)
T 2ond_A           99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALM  177 (308)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            345678999999999999999999999999999987 89999988765 8999999999999999999888888666665


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+...|++++|+.+|+++++++|++..+|..++.++...|+.++|...++
T Consensus       178 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~  227 (308)
T 2ond_A          178 EYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE  227 (308)
T ss_dssp             HHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            55436899999999999999999999999999999999999999988887

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.47  E-value=1.4e-13  Score=120.29  Aligned_cols=110  Identities=13%  Similarity=0.054  Sum_probs=98.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-------NAL-----LLGNYARFLKEVRGDFAKAEELCGRAILA------  237 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~-------n~~-----~l~nLA~~L~~~~gd~ekAee~~erALel------  237 (331)
                      ..|.+..++..|+|++|+.+|+++|+++|+       +..     +|.++|.++.. +|+|++|+.+|++||++      
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhhcccc
Confidence            457888999999999999999999999999       444     99999999776 99999999999999999      


Q ss_pred             -CCCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          238 -NPSDGNIL----SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL  287 (331)
Q Consensus       238 -dP~d~~al----~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L  287 (331)
                       +|+++.+|    ++.+.++.. +|++++|+.+|++|++++|++..+.-.+..+.
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~  146 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEERKGETPGKERMM  146 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence             99999999    999999998 99999999999999999998876655554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.47  E-value=6e-13  Score=111.43  Aligned_cols=108  Identities=14%  Similarity=0.099  Sum_probs=99.0

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDF--AKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~--ekAee~~erALeldP~d~~al~~yA  249 (331)
                      +.....++|.+|...+++++|+.+|++++..+|+++.++.++|.+++...+++  ++|+.+|+++++++|+++.++..++
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la  122 (177)
T 2e2e_A           43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA  122 (177)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            34457789999999999999999999999999999999999999955458998  9999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl  280 (331)
                      .+++. .|++++|+.+|+++++++|.+....
T Consensus       123 ~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A          123 SDAFM-QANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHH-cccHHHHHHHHHHHHhhCCCCccHH
Confidence            99998 9999999999999999999876543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.47  E-value=5.4e-13  Score=119.12  Aligned_cols=119  Identities=13%  Similarity=0.144  Sum_probs=112.0

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (331)
Q Consensus       183 y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA  262 (331)
                      +...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+++|+++++.+|+++.++..++.++.. .|++++|
T Consensus       148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A  225 (327)
T 3cv0_A          148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNL-SNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEA  225 (327)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHH
Confidence            4456789999999999999999999999999999766 9999999999999999999999999999999998 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       263 ~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      +.+|+++++.+|++..++..++.++...|++++|.+.++..
T Consensus       226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  266 (327)
T 3cv0_A          226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA  266 (327)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888733

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.47  E-value=7.9e-13  Score=127.11  Aligned_cols=128  Identities=16%  Similarity=0.144  Sum_probs=117.5

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....+++.+|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+++|+++++++|+++.++..++.+++
T Consensus       277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  355 (537)
T 3fp2_A          277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY  355 (537)
T ss_dssp             HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3456788899999999999999999999999999999999998766 999999999999999999999999999999988


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      . .|++++|+.+|+++++.+|++..++..++.++...|++++|...++..
T Consensus       356 ~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          356 K-QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             H-TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             H-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            8 999999999999999999999999999999999999999998887743

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.46  E-value=4e-13  Score=101.58  Aligned_cols=98  Identities=15%  Similarity=0.175  Sum_probs=93.0

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 020094          202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD--DCYV  279 (331)
Q Consensus       202 ~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~--d~~v  279 (331)
                      ++|+++.++..+|.++.. .+++++|+.+|+++++++|++..++..++.+++. .|++++|+.+|+++++.+|.  +..+
T Consensus         1 l~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~   78 (112)
T 2kck_A            1 MVDQNPEEYYLEGVLQYD-AGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDV   78 (112)
T ss_dssp             CCCSSTTGGGGHHHHHHS-SCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred             CCCCcHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHH
Confidence            378899999999999765 9999999999999999999999999999999998 99999999999999999999  9999


Q ss_pred             HHHHHHHHHHc-CCchHHHHhhh
Q 020094          280 LASYAKFLWDA-GDDEEEEQDNE  301 (331)
Q Consensus       280 l~~LA~~L~~l-G~~eEa~~~~~  301 (331)
                      +..++.++... |++++|.+.++
T Consensus        79 ~~~l~~~~~~~~~~~~~A~~~~~  101 (112)
T 2kck_A           79 WAAKADALRYIEGKEVEAEIAEA  101 (112)
T ss_dssp             HHHHHHHHTTCSSCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHH
Confidence            99999999999 99999998887

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.46  E-value=4.4e-13  Score=133.53  Aligned_cols=114  Identities=16%  Similarity=0.166  Sum_probs=92.3

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF  266 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yf  266 (331)
                      +++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+++|++|++++|+++.++..++.+++. +|++++|+.+|
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~   80 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELG-MGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLL   80 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence            688999999999999999999999999999776 9999999999999999999999999999999998 99999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          267 DQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       267 ekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +++++++|++..++.++|.+|...|++++|...+++
T Consensus        81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  116 (568)
T 2vsy_A           81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTR  116 (568)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999999999999999999999999988873

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.46  E-value=1.8e-12  Score=103.04  Aligned_cols=101  Identities=14%  Similarity=0.050  Sum_probs=93.2

Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       201 ~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl  280 (331)
                      ..+|.++..+..+|.+++. .+++++|+.+|++++.++|+++.++..++.+++. .|++++|+.+|+++++++|++..++
T Consensus         3 ~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~   80 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH   80 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHHH-hCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHH
Confidence            4578899999999999776 9999999999999999999999999999999998 9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCchHHHHhhhhh
Q 020094          281 ASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       281 ~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      +.+|.++...|++++|...++..
T Consensus        81 ~~l~~~~~~~~~~~~A~~~~~~a  103 (137)
T 3q49_B           81 FFLGQCQLEMESYDEAIANLQRA  103 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHH
Confidence            99999999999999999877733

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.46  E-value=2e-13  Score=119.29  Aligned_cols=98  Identities=20%  Similarity=0.189  Sum_probs=87.2

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd----------~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      +.+.+++|+..|+++++++|+++++++++|.++.. .++          +++|+..|++||+++|++..+|++++.++..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            44678999999999999999999999999998766 555          4699999999999999999999999999987


Q ss_pred             Hc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          255 AH-----------KDASRAESYFDQAVKSAPDDCYVLASYA  284 (331)
Q Consensus       255 ~~-----------Gd~deA~~yfekAL~ldP~d~~vl~~LA  284 (331)
                       +           |++++|+.+|++|++++|++...+..+.
T Consensus        93 -lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~  132 (158)
T 1zu2_A           93 -FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  132 (158)
T ss_dssp             -HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             -hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence             5           4899999999999999999876655544

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.45  E-value=8.3e-13  Score=116.23  Aligned_cols=126  Identities=10%  Similarity=-0.018  Sum_probs=107.1

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-----------------cCCHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEV-----------------RGDFAKAEELCGRA  234 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~---~l~nLA~~L~~~-----------------~gd~ekAee~~erA  234 (331)
                      ...++|.+|...+++++|+.+|+++++.+|+++.   +++.+|.++...                 .+++++|+..|+++
T Consensus        43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  122 (225)
T 2yhc_A           43 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL  122 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999865   677777775531                 46899999999999


Q ss_pred             HHhCCCCHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCch
Q 020094          235 ILANPSDGNIL-----------------SLYADLIWQAHKDASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGDDE  294 (331)
Q Consensus       235 LeldP~d~~al-----------------~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~---~vl~~LA~~L~~lG~~e  294 (331)
                      ++.+|+++.++                 ..++.+++. .|++++|+..|+++++..|++.   .+++.++.++.++|+.+
T Consensus       123 l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~  201 (225)
T 2yhc_A          123 VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA  201 (225)
T ss_dssp             HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence            99999987665                 356667777 9999999999999999999876   67999999999999999


Q ss_pred             HHHHhhh
Q 020094          295 EEEQDNE  301 (331)
Q Consensus       295 Ea~~~~~  301 (331)
                      +|.+.++
T Consensus       202 ~A~~~~~  208 (225)
T 2yhc_A          202 QAEKVAK  208 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988776

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.45  E-value=1e-12  Score=109.49  Aligned_cols=97  Identities=16%  Similarity=0.108  Sum_probs=90.7

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094          203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS  282 (331)
Q Consensus       203 nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~  282 (331)
                      ++.++..+..+|.+++. .+++++|+++|+++++++|+++.+|.+++.+++. .|++++|+.+|+++++++|++..+|++
T Consensus         7 ~~~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~   84 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMA-RKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSR   84 (164)
T ss_dssp             CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            45567888999988776 9999999999999999999999999999999998 999999999999999999999999999


Q ss_pred             HHHHHHHcCCchHHHHhhh
Q 020094          283 YAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       283 LA~~L~~lG~~eEa~~~~~  301 (331)
                      +|.+|..+|++++|...++
T Consensus        85 lg~~~~~~g~~~~A~~~~~  103 (164)
T 3sz7_A           85 LGLARFDMADYKGAKEAYE  103 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHH
Confidence            9999999999999987666

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.45  E-value=2.3e-12  Score=121.37  Aligned_cols=127  Identities=13%  Similarity=0.072  Sum_probs=101.2

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNY------------ARFLKEVRGDFAKAEELCGRAILANPS  240 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nL------------A~~L~~~~gd~ekAee~~erALeldP~  240 (331)
                      .....+++.+|...+++++|+.+|++++..+|++..++..+            |.++.. .|++++|+.+|+++++++|+
T Consensus       211 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~A~~~~~~~l~~~p~  289 (450)
T 2y4t_A          211 TEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIR-DGRYTDATSKYESVMKTEPS  289 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCc
Confidence            34466778888888888888888888888888888777666            666554 78888888888888888888


Q ss_pred             CHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          241 DGN----ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       241 d~~----al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++.    ++..++.++.. .|++++|+.+|+++++++|++..+|..++.++...|++++|...++
T Consensus       290 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~  353 (450)
T 2y4t_A          290 IAEYTVRSKERICHCFSK-DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE  353 (450)
T ss_dssp             SHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            754    56667777777 8888888888888888888888888888888888888888887776

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.45  E-value=6.5e-13  Score=121.87  Aligned_cols=125  Identities=15%  Similarity=0.033  Sum_probs=110.9

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVR-GDFAKAEELCGRAILANPSD------  241 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~-gd~ekAee~~erALeldP~d------  241 (331)
                      ...|++.+|...|++++|+.+|++++.+.|..      ..++.++|.++.. . |++++|+++|++|+++.|.+      
T Consensus        79 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-~lg~~~~A~~~~~~Al~~~~~~~~~~~~  157 (292)
T 1qqe_A           79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEN-DLHDYAKAIDCYELAGEWYAQDQSVALS  157 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-hhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence            46789999999999999999999999998754      4578899988655 6 99999999999999998865      


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCchHHHHhhh
Q 020094          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY-------VLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~-------vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..++.+++.++.. +|++++|+.+|++++++.|++..       ++.+++.++...|+.++|...++
T Consensus       158 ~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  223 (292)
T 1qqe_A          158 NKCFIKCADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ  223 (292)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5678889999988 99999999999999999996643       67899999999999999999887

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.45  E-value=1.8e-12  Score=126.87  Aligned_cols=129  Identities=12%  Similarity=0.011  Sum_probs=113.9

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....+++..|...|++++|+.+|+++++.+|++..++..++.++.. .|++++|+++|+++++.+|++..++..++.++
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  451 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAI-EGEHDQAISAYTTAARLFQGTHLPYLFLGMQH  451 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            33456788899999999999999999999999999999999988766 89999999999999999999999998888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      .. .|++++|+.+|+++++++|.+..+|..++.+|.+.|++++|.+.+++.
T Consensus       452 ~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  501 (597)
T 2xpi_A          452 MQ-LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA  501 (597)
T ss_dssp             HH-HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            87 999999999999999999999999999999999999999998877743

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.44  E-value=2.1e-12  Score=121.59  Aligned_cols=129  Identities=12%  Similarity=0.040  Sum_probs=117.7

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.-....+|..|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|+++++++|+++.++..++.+
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  103 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLA-MGKSKAALPDLTKVIQLKMDFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            334467789999999999999999999999999999999999999766 9999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCchHHHHhhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDC---YVLASY------------AKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~---~vl~~L------------A~~L~~lG~~eEa~~~~~~  302 (331)
                      +.. .|++++|+.+|+++++++|++.   .++..+            |.++...|++++|...++.
T Consensus       104 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  168 (450)
T 2y4t_A          104 LLK-QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK  168 (450)
T ss_dssp             HHH-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHH-cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            998 9999999999999999999988   776655            6669999999999988873

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.44  E-value=3.9e-13  Score=116.90  Aligned_cols=129  Identities=20%  Similarity=0.253  Sum_probs=115.8

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------N  238 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~--------nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel--------d  238 (331)
                      ...++|.+|...+++++|+.+|++++..        +|....++.++|.++.. .|++++|+++|++++.+        +
T Consensus        45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           45 MLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            4678999999999999999999999988        46667789999998765 99999999999999998        5


Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhc
Q 020094          239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS--------APDDCYVLASYAKFLWDAGDDEEEEQDNEESQH  305 (331)
Q Consensus       239 P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l--------dP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~  305 (331)
                      |....++.+++.+++. .|++++|+.+|++++++        .|....++..+|.++...|++++|...+++...
T Consensus       124 ~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          124 PDVAKQLNNLALLCQN-QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7788899999999998 99999999999999999        777889999999999999999999987775443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.44  E-value=2.2e-12  Score=126.30  Aligned_cols=124  Identities=12%  Similarity=-0.017  Sum_probs=70.2

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSD-GNILSLY  248 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel------dP~d-~~al~~y  248 (331)
                      ..+++..|...|++++|+.+|+++++.+|.++.++..++.++.. .|++++|+++|++++++      +|++ ..+|..+
T Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          444 YLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFN-KSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence            44455555555555555555555555555555555555555443 55555555555555555      4433 4555555


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.+++. .|++++|+.+|+++++++|++..++..++.+|...|++++|...++
T Consensus       523 ~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  574 (597)
T 2xpi_A          523 GHAYRK-LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH  574 (597)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            555555 5566666666666666556555566666666666666655555554

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.44  E-value=1e-12  Score=103.25  Aligned_cols=103  Identities=17%  Similarity=0.182  Sum_probs=92.8

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094          190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (331)
Q Consensus       190 ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekA  269 (331)
                      ++|+.+|+++++.+|+++.+++++|.++.. .|++++|+.+|+++++++|+++.+|..++.++.. .|++++|+.+|+++
T Consensus         2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a   79 (115)
T 2kat_A            2 QAITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESG   79 (115)
T ss_dssp             CCHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence            578999999999999999999999999766 9999999999999999999999999999999998 99999999999999


Q ss_pred             HHhCC--CCHHHHHHHHHHHHHcCCch
Q 020094          270 VKSAP--DDCYVLASYAKFLWDAGDDE  294 (331)
Q Consensus       270 L~ldP--~d~~vl~~LA~~L~~lG~~e  294 (331)
                      ++++|  .+...+..+..++..+++..
T Consensus        80 l~~~~~~~~~~~~~~l~~~l~~l~~~~  106 (115)
T 2kat_A           80 LAAAQSRGDQQVVKELQVFLRRLARED  106 (115)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccccccHHHHHHHHHHHHHhcccc
Confidence            99998  56677777777777665543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.43  E-value=8.5e-13  Score=117.46  Aligned_cols=125  Identities=14%  Similarity=-0.046  Sum_probs=111.3

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPSDGN  243 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n---~~~l~nLA~~L~~~--------~gd~ekAee~~erALeldP~d~~  243 (331)
                      ...++|.+|...+++++|+.+|++++..+|++   +.+++.+|.++. .        .+++++|+.+|+++++.+|+++.
T Consensus        54 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~  132 (261)
T 3qky_A           54 AQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL  132 (261)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchh
Confidence            46789999999999999999999999998865   667888898854 4        78999999999999999999877


Q ss_pred             HH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------CCc
Q 020094          244 IL-----------------SLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYVLASYAKFLWDA----------GDD  293 (331)
Q Consensus       244 al-----------------~~yA~ll~~~~Gd~deA~~yfekAL~ldP~---d~~vl~~LA~~L~~l----------G~~  293 (331)
                      +.                 +.+|.+++. .|++++|+.+|+++++..|+   ...+++.++.+|..+          |++
T Consensus       133 ~~~a~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~  211 (261)
T 3qky_A          133 VDDATQKIRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY  211 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence            76                 677888888 99999999999999999997   567999999999987          788


Q ss_pred             hHHHHhhh
Q 020094          294 EEEEQDNE  301 (331)
Q Consensus       294 eEa~~~~~  301 (331)
                      ++|...++
T Consensus       212 ~~A~~~~~  219 (261)
T 3qky_A          212 RRAVELYE  219 (261)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88988777

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.43  E-value=1.7e-13  Score=129.71  Aligned_cols=124  Identities=15%  Similarity=0.052  Sum_probs=87.9

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----------------LLLGNYARFLKEVRGDFAKAEELCGRAILAN  238 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~-----------------~~l~nLA~~L~~~~gd~ekAee~~erALeld  238 (331)
                      ..+.|..|+..+++++|+.+|++++..+|++.                 .+++++|.++.. .+++++|+.+|++|++++
T Consensus       182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~-~g~~~~A~~~~~~al~~~  260 (338)
T 2if4_A          182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIK-LKRYDEAIGHCNIVLTEE  260 (338)
T ss_dssp             HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHT-TTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhC
Confidence            45678889999999999999999999999987                 388999998765 999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCchHHHHhhh
Q 020094          239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA-GDDEEEEQDNE  301 (331)
Q Consensus       239 P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l-G~~eEa~~~~~  301 (331)
                      |+++.+|+++|.+++. +|++++|+.+|+++++++|++..++..++.+.... +..+++.+.++
T Consensus       261 p~~~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~  323 (338)
T 2if4_A          261 EKNPKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK  323 (338)
T ss_dssp             TTCHHHHHHHHHHHHT-TTCHHHHHHHHHHTTC-------------------------------
T ss_pred             CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998 99999999999999999999999999999885544 44444454554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=3.5e-12  Score=108.79  Aligned_cols=103  Identities=9%  Similarity=0.005  Sum_probs=96.1

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----------
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-----------  242 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~-----------  242 (331)
                      ....|+|.+|...+++++|+.+|++++..+|+++.++.++|.++.. .|++++|+++|++++++.|.+.           
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  116 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  116 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-cccHHHHHHHHHHHHHhCCCccHHHHHHhcccc
Confidence            4567899999999999999999999999999999999999999776 9999999999999999998877           


Q ss_pred             -----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094          243 -----NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       243 -----~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~  278 (331)
                           .++.+++.+++. .|++++|+.+|+++++++|++..
T Consensus       117 ~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~  156 (213)
T 1hh8_A          117 KLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRH  156 (213)
T ss_dssp             EEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGG
T ss_pred             CccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccccc
Confidence                 999999999998 99999999999999999997643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.40  E-value=1.2e-12  Score=113.83  Aligned_cols=125  Identities=15%  Similarity=0.170  Sum_probs=113.5

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------N  238 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~--------nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel--------d  238 (331)
                      ...++|.+|...+++++|+.+|++++.+        +|....++.++|.++.. .|++++|+++|++++++        +
T Consensus        87 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~  165 (283)
T 3edt_B           87 TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQN-QGKAEEVEYYYRRALEIYATRLGPDD  165 (283)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4678999999999999999999999998        57778889999999766 99999999999999999        7


Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------------------------------
Q 020094          239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS----------------------------------------------  272 (331)
Q Consensus       239 P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l----------------------------------------------  272 (331)
                      |....++..++.+++. .|++++|+.+|++++++                                              
T Consensus       166 ~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (283)
T 3edt_B          166 PNVAKTKNNLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKAC  244 (283)
T ss_dssp             HHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CC
T ss_pred             HHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhc
Confidence            8888899999999998 99999999999999987                                              


Q ss_pred             ---CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          273 ---APDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       273 ---dP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                         .|....++..+|.+|...|++++|...++
T Consensus       245 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  276 (283)
T 3edt_B          245 KVDSPTVNTTLRSLGALYRRQGKLEAAHTLED  276 (283)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence               24556789999999999999999998887

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.40  E-value=2.3e-12  Score=113.35  Aligned_cols=126  Identities=16%  Similarity=0.086  Sum_probs=110.6

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLYA  249 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~---~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~---al~~yA  249 (331)
                      ..+.|..+...|++++|+.+|++++..+|+++   .+++.+|.+++. .|++++|+..|+++++++|+++.   +++.++
T Consensus         7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~-~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g   85 (225)
T 2yhc_A            7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYK-NADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG   85 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence            56788999999999999999999999999874   789999999776 99999999999999999999875   677777


Q ss_pred             HHHHHH-----------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCchH
Q 020094          250 DLIWQA-----------------HKDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGDDEE  295 (331)
Q Consensus       250 ~ll~~~-----------------~Gd~deA~~yfekAL~ldP~d~~vl-----------------~~LA~~L~~lG~~eE  295 (331)
                      .+++..                 .|++++|+.+|+++++..|++..++                 ..+|.+|.+.|++++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~  165 (225)
T 2yhc_A           86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVA  165 (225)
T ss_dssp             HHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH
Confidence            777641                 4789999999999999999887655                 578899999999999


Q ss_pred             HHHhhhh
Q 020094          296 EEQDNEE  302 (331)
Q Consensus       296 a~~~~~~  302 (331)
                      |...++.
T Consensus       166 A~~~~~~  172 (225)
T 2yhc_A          166 VVNRVEG  172 (225)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988873

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.39  E-value=3e-12  Score=104.10  Aligned_cols=96  Identities=17%  Similarity=0.156  Sum_probs=86.9

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 020094          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD-------CY  278 (331)
Q Consensus       206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d-------~~  278 (331)
                      .+.++.++|..++. .|+|++|+++|.+||+++|+++.+|.++|.+++. +|++++|+.+|+++++++|++       +.
T Consensus         7 ~A~a~~~lG~~~~~-~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            7 AAIAEKDLGNAAYK-QKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            45567789999776 9999999999999999999999999999999998 999999999999999999855       35


Q ss_pred             HHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          279 VLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       279 vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      ++.++|.++...+++++|.+.++..
T Consensus        85 ~~~~lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           85 AMSRAGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8899999999999999999888733

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.39  E-value=3.7e-12  Score=122.38  Aligned_cols=125  Identities=15%  Similarity=0.134  Sum_probs=117.6

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..+++.++...+++++|+.+|++++..+|+ +.++..+|.++.. .+++++|+++|+++++.+|+++.++..++.+++. 
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-  322 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLAD-KENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI-  322 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCC-SSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHH-hcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh-
Confidence            556778999999999999999999999999 9999999998665 9999999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      .|++++|+.+|+++++++|++..++..++.++...|++++|...+++.
T Consensus       323 ~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  370 (537)
T 3fp2_A          323 LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNET  370 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999888733

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.39  E-value=3.8e-13  Score=127.04  Aligned_cols=114  Identities=11%  Similarity=-0.026  Sum_probs=108.7

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 020094          186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------------GNILSLYAD  250 (331)
Q Consensus       186 ~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---------------~~al~~yA~  250 (331)
                      ..++++|+.+|++++..+|+++.++.++|.+++. .+++++|+.+|++|++++|++               ..++.+++.
T Consensus       126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~  204 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFK-EGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM  204 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999776 999999999999999999999               699999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +++. +|++++|+.+|++|++++|++..+++++|.+|..+|++++|...++
T Consensus       205 ~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  254 (336)
T 1p5q_A          205 CHLK-LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ  254 (336)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9998 9999999999999999999999999999999999999999998887

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.38  E-value=5e-12  Score=116.33  Aligned_cols=129  Identities=16%  Similarity=0.165  Sum_probs=113.6

Q ss_pred             CcccccchHHHHH-------hCCCc-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSN-------NNHGS-------SSTDAYYEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL  236 (331)
Q Consensus       172 ~~~~~~N~A~~y~-------s~gd~-------ekA~e~yerAL~-~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALe  236 (331)
                      +.....+++.++.       ..|++       ++|+.+|+++++ ++|++..+|.+||.++.. .|++++|+++|++|++
T Consensus        49 ~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~  127 (308)
T 2ond_A           49 HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES-RMKYEKVHSIYNRLLA  127 (308)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh-cCCHHHHHHHHHHHHh
Confidence            3445677888876       35786       999999999999 799999999999999765 9999999999999999


Q ss_pred             hCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCchHHHHhhhh
Q 020094          237 ANPSDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD-AGDDEEEEQDNEE  302 (331)
Q Consensus       237 ldP~d~~-al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~-lG~~eEa~~~~~~  302 (331)
                      ++|+++. +|..++.++.. .|++++|+.+|++|++.+|.+..++...+.+... .|+.++|.+.++.
T Consensus       128 ~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~  194 (308)
T 2ond_A          128 IEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFEL  194 (308)
T ss_dssp             SSSSCTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             ccccCccHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999987 99999999888 9999999999999999999988888877777554 6999999988873

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.38  E-value=7.2e-13  Score=121.74  Aligned_cols=100  Identities=16%  Similarity=0.069  Sum_probs=94.4

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...++|..|...+++++|+.+|+++++.+|+++.++.++|.++.. .|++++|+.+|++|++++|++..+++.+|.++..
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQCQLE   84 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            345789999999999999999999999999999999999999766 9999999999999999999999999999999998


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 020094          255 AHKDASRAESYFDQAVKSAPDD  276 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d  276 (331)
                       .|++++|+.+|+++++++|++
T Consensus        85 -~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           85 -MESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             -TTCHHHHHHHHHHHHHHHHHT
T ss_pred             -cCCHHHHHHHHHHHHHhCccc
Confidence             999999999999999999865

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.38  E-value=3.8e-12  Score=102.88  Aligned_cols=90  Identities=11%  Similarity=-0.037  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD  289 (331)
Q Consensus       210 l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~  289 (331)
                      ++.+|..+.. .|++++|+..|+++++++|+++.+|+.++.++.. .|++++|+.+|++|++++|++..++..+|.++..
T Consensus        20 ~~~~g~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLK-LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            5667777665 9999999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             cCCchHHHHhhh
Q 020094          290 AGDDEEEEQDNE  301 (331)
Q Consensus       290 lG~~eEa~~~~~  301 (331)
                      .|++++|...++
T Consensus        98 ~g~~~~A~~~~~  109 (121)
T 1hxi_A           98 EHNANAALASLR  109 (121)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHH
Confidence            999999998887

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.37  E-value=2.1e-12  Score=133.50  Aligned_cols=115  Identities=16%  Similarity=-0.029  Sum_probs=108.8

Q ss_pred             HhCCCcHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          184 NNNHGSSSTDAYYEKMI--------EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       184 ~s~gd~ekA~e~yerAL--------~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ...+++++|+++|++++        +.+|+++.++..+|.++.. .|++++|+++|++|++++|+++.+|+++|.+++. 
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLD-LGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL-  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHh-cCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-
Confidence            56689999999999999        9999999999999999776 9999999999999999999999999999999998 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .|++++|+.+|++|++++|++..++.++|.++...|++++ ...++
T Consensus       480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~  524 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ  524 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence            9999999999999999999999999999999999999999 87777

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.36  E-value=1e-11  Score=95.46  Aligned_cols=100  Identities=19%  Similarity=0.262  Sum_probs=93.5

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...+++.++...+++++|+.+|++++..+|.++.++..+|.++.. .+++++|+++++++++.+|++..++..++.+++.
T Consensus        37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            456789999999999999999999999999999999999998765 9999999999999999999999999999999988


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC
Q 020094          255 AHKDASRAESYFDQAVKSAPDD  276 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d  276 (331)
                       .|++++|+.+|+++++.+|++
T Consensus       116 -~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          116 -QGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             -TTCHHHHHHHHHHHHHHSTTC
T ss_pred             -HccHHHHHHHHHHHHccCCCC
Confidence             999999999999999999863

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.36  E-value=2.4e-12  Score=122.44  Aligned_cols=127  Identities=14%  Similarity=0.124  Sum_probs=111.6

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....+++.+|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|+++++++|+++.++..++.+++
T Consensus       271 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  349 (514)
T 2gw1_A          271 NSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI-LQNYDQAGKDFDKAKELDPENIFPYIQLACLAY  349 (514)
T ss_dssp             HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH-TTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH
Confidence            3466788888888999999999999999999999998888888665 899999999999999999999999888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      . .|++++|+.+|+++++.+|++..++..++.++...|++++|...++.
T Consensus       350 ~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  397 (514)
T 2gw1_A          350 R-ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDL  397 (514)
T ss_dssp             T-TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             H-cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            7 89999999999999999999899999999999999999999877763

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.35  E-value=3.4e-12  Score=97.57  Aligned_cols=94  Identities=12%  Similarity=-0.000  Sum_probs=85.1

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 020094          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYV  279 (331)
Q Consensus       206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~v  279 (331)
                      ++..+.++|.++.. .|++++|+++|++|++++|+++.++.+++.+++. .|++++|+.+|+++++++|++      ..+
T Consensus         3 ~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~   80 (111)
T 2l6j_A            3 QFEKQKEQGNSLFK-QGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence            45678889988765 9999999999999999999999999999999998 999999999999999999998      889


Q ss_pred             HHHHHHHHHHcCCchHHHHhhh
Q 020094          280 LASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       280 l~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++.++.++...|+.+++...++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHH
Confidence            9999999999998877765554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.34  E-value=9.3e-12  Score=97.07  Aligned_cols=99  Identities=20%  Similarity=0.151  Sum_probs=91.9

Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094          203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS  282 (331)
Q Consensus       203 nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~  282 (331)
                      .|.++..+..+|.++.. .+++++|+.+|+++++.+|++..++..++.+++. .+++++|+.+|+++++++|++..++..
T Consensus        12 ~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~   89 (133)
T 2lni_A           12 NPDLALMVKNKGNECFQ-KGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTR   89 (133)
T ss_dssp             SSCHHHHHHHHHHHHHH-TTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence            46678888999988766 9999999999999999999999999999999888 999999999999999999999999999


Q ss_pred             HHHHHHHcCCchHHHHhhhhh
Q 020094          283 YAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       283 LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      +|.++...|++++|...+++.
T Consensus        90 la~~~~~~~~~~~A~~~~~~~  110 (133)
T 2lni_A           90 KAAALEAMKDYTKAMDVYQKA  110 (133)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHH
Confidence            999999999999999888733

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.34  E-value=1.5e-12  Score=111.67  Aligned_cols=115  Identities=13%  Similarity=-0.025  Sum_probs=102.3

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----------------NILSLY  248 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~----------------~al~~y  248 (331)
                      ..+.++++.+.|.......+..+..+..+|..++. .+++++|+++|++|+++.|+++                .++.++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   94 (198)
T 2fbn_A           16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFK-KNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL   94 (198)
T ss_dssp             ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence            34788999999988888888888999999999776 9999999999999999999987                899899


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.+++. .|++++|+.+|+++++++|++..+++.+|.++..+|++++|.+.++
T Consensus        95 a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~  146 (198)
T 2fbn_A           95 ATCYNK-NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY  146 (198)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHH-hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            999988 9999999999999999999999999999999999999999988776

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.33  E-value=3.9e-12  Score=120.96  Aligned_cols=129  Identities=16%  Similarity=0.127  Sum_probs=120.1

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.....+++.+|...+++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|+++++.+|+++.++..++.+
T Consensus       303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  381 (514)
T 2gw1_A          303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYR-ENKFDDCETLFSEAKRKFPEAPEVPNFFAEI  381 (514)
T ss_dssp             CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTT-TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence            344677899999999999999999999999999999999999999766 9999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCchHHHHhhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSAPDDCY------VLASYAKFLWD---AGDDEEEEQDNEE  302 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ldP~d~~------vl~~LA~~L~~---lG~~eEa~~~~~~  302 (331)
                      +.. .|++++|+.+|+++++.+|++..      ++..++.++..   .|++++|...++.
T Consensus       382 ~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~  440 (514)
T 2gw1_A          382 LTD-KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK  440 (514)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred             HHH-CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence            998 99999999999999999998754      99999999999   9999999988873

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.33  E-value=3.4e-11  Score=91.42  Aligned_cols=94  Identities=18%  Similarity=0.018  Sum_probs=88.2

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK  285 (331)
Q Consensus       206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~  285 (331)
                      .+..+..+|..+.. .+++++|+.+|++++..+|+++.++..++.+++. .|++++|+.+|+++++.+|++..++..++.
T Consensus         3 ~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALS-VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            45677888888665 9999999999999999999999999999999998 999999999999999999999999999999


Q ss_pred             HHHHcCCchHHHHhhh
Q 020094          286 FLWDAGDDEEEEQDNE  301 (331)
Q Consensus       286 ~L~~lG~~eEa~~~~~  301 (331)
                      ++...|++++|...++
T Consensus        81 ~~~~~~~~~~A~~~~~   96 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYE   96 (118)
T ss_dssp             HHHHTTCHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHH
Confidence            9999999999998887

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=9e-12  Score=118.58  Aligned_cols=141  Identities=15%  Similarity=0.122  Sum_probs=95.2

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------------------------------
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL----------------------------------  217 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L----------------------------------  217 (331)
                      ......|+|.+|...+++++|+.+|+++++.+|+++.++.++|.++                                  
T Consensus       246 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  325 (472)
T 4g1t_A          246 VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKK  325 (472)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            4445678999999999999999999999999999998877766432                                  


Q ss_pred             ------------------HHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----
Q 020094          218 ------------------KEVRGDFAKAEELCGRAILANPSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKS----  272 (331)
Q Consensus       218 ------------------~~~~gd~ekAee~~erALeldP~d~~---al~~yA~ll~~~~Gd~deA~~yfekAL~l----  272 (331)
                                        +...+++++|+++|++|++++|++..   ++..++.++....|++++|+.+|++|+++    
T Consensus       326 a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~  405 (472)
T 4g1t_A          326 ADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS  405 (472)
T ss_dssp             HHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred             HhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence                              12267888888888888888887654   34456655544478888888888888765    


Q ss_pred             --------------------CCCCHHHHHHHHHHHHHcCCchHHHHhhhhhhcccCCCCCCCC
Q 020094          273 --------------------APDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSPP  315 (331)
Q Consensus       273 --------------------dP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~~~~~~~~~~~~  315 (331)
                                          +|+++.++.++|.++...|+.++|.+.++   +.-+..+..|.
T Consensus       406 ~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~---kALe~~~~~p~  465 (472)
T 4g1t_A          406 REKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSE---RGLESGSLIPS  465 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH---HHHhcCCCCCc
Confidence                                45566788889999999999999988887   55565555555

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=4e-12  Score=112.64  Aligned_cols=126  Identities=16%  Similarity=0.202  Sum_probs=113.2

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEAN--------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA--------  237 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~n--------P~n~~~l~nLA~~L~~~~gd~ekAee~~erALel--------  237 (331)
                      ....++|.+|...+++++|+.+|++++.+.        |....++.++|.++.. .|++++|+++|++++++        
T Consensus       112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~  190 (311)
T 3nf1_A          112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLGPD  190 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            346789999999999999999999999984        5667788899998765 99999999999999999        


Q ss_pred             CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---------------------------------------------
Q 020094          238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS---------------------------------------------  272 (331)
Q Consensus       238 dP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l---------------------------------------------  272 (331)
                      +|....++..++.+++. .|++++|+.+|++++++                                             
T Consensus       191 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  269 (311)
T 3nf1_A          191 DPNVAKTKNNLASCYLK-QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA  269 (311)
T ss_dssp             CHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred             CHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence            78888899899999988 99999999999999985                                             


Q ss_pred             ----CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          273 ----APDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       273 ----dP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                          .|.+..++..+|.+|...|++++|.+.++
T Consensus       270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  302 (311)
T 3nf1_A          270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE  302 (311)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                46677899999999999999999998887

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.32  E-value=1.6e-11  Score=94.70  Aligned_cols=100  Identities=16%  Similarity=0.088  Sum_probs=92.0

Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       201 ~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl  280 (331)
                      ..+|.++..+..+|.++.. .+++++|+.+|++++..+|+++.++..++.+++. .|++++|+.+|+++++.+|++..++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~   83 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMK-VENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAY   83 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hcchhhhHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHH
Confidence            3456677888999988766 9999999999999999999999999999999988 9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCchHHHHhhhh
Q 020094          281 ASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       281 ~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      ..+|.++...+++++|...++.
T Consensus        84 ~~~~~~~~~~~~~~~A~~~~~~  105 (131)
T 2vyi_A           84 GRMGLALSSLNKHVEAVAYYKK  105 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999999999999988873

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.32  E-value=4.4e-12  Score=112.37  Aligned_cols=128  Identities=20%  Similarity=0.238  Sum_probs=114.1

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--------  238 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~--------nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld--------  238 (331)
                      ...++|.+|...+++++|+.+|++++..        +|....++.++|.++.. .|++++|+++|++++++.        
T Consensus        71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (311)
T 3nf1_A           71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGK-RGKYKEAEPLCKRALEIREKVLGKDH  149 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence            4678999999999999999999999998        46667888999998765 999999999999999984        


Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094          239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS--------APDDCYVLASYAKFLWDAGDDEEEEQDNEESQ  304 (331)
Q Consensus       239 P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~l--------dP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~  304 (331)
                      |....++..++.+++. .|++++|+.+|++++++        .|....++..++.++...|++++|...+++..
T Consensus       150 ~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             HHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6677888889998888 99999999999999999        77778899999999999999999998777444

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.32  E-value=8.9e-12  Score=115.36  Aligned_cols=126  Identities=10%  Similarity=-0.032  Sum_probs=110.0

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +......+|..|...|++++|+.+|++     |+++.++..+|.++.. .|++++|+++|+++++.+|++..+....+++
T Consensus       100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~  173 (291)
T 3mkr_A          100 NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILLK-LDRLDLARKELKKMQDQDEDATLTQLATAWV  173 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCcCcHHHHHHHHHH
Confidence            445678899999999999999999998     9999999999999766 9999999999999999999987655433433


Q ss_pred             HHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          252 IWQ-AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       252 l~~-~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      .+. ..|++++|+.+|+++++.+|+++.++.++|.++...|++++|...+++.
T Consensus       174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~a  226 (291)
T 3mkr_A          174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEA  226 (291)
T ss_dssp             HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            322 1589999999999999999999999999999999999999999988843

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.32  E-value=5.5e-11  Score=90.86  Aligned_cols=99  Identities=19%  Similarity=0.334  Sum_probs=89.1

Q ss_pred             hCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          202 ANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       202 ~nP~n-~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl  280 (331)
                      .+|.+ ..++..+|.++.. .+++++|+++|++++..+|++..++..++.+++. .|++++|+.+|+++++.+|.+..++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~   80 (125)
T 1na0_A            3 MDPGNSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAW   80 (125)
T ss_dssp             ----CHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCccccHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHH
Confidence            45665 7788899988666 9999999999999999999999999999999988 9999999999999999999999999


Q ss_pred             HHHHHHHHHcCCchHHHHhhhh
Q 020094          281 ASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       281 ~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      ..++.++...+++++|...+++
T Consensus        81 ~~la~~~~~~~~~~~A~~~~~~  102 (125)
T 1na0_A           81 YNLGNAYYKQGDYDEAIEYYQK  102 (125)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHH
Confidence            9999999999999999988873

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.32  E-value=8.3e-12  Score=99.07  Aligned_cols=126  Identities=13%  Similarity=0.025  Sum_probs=107.3

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GN  243 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~------~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~~  243 (331)
                      ..++|.+|...+++++|+.+|++++...+...      .++.++|.++.. .|++++|+++|++++++.+..      ..
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            56789999999999999999999999866432      477888988766 999999999999999987653      66


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP------~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      ++..++.+++. .|++++|+.+|++++++.+      ....++..++.++...|+.++|...+++.
T Consensus        91 ~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           91 SCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            78888888888 9999999999999998844      22568899999999999999998877733

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.32  E-value=2.4e-11  Score=89.81  Aligned_cols=85  Identities=16%  Similarity=0.262  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYA  284 (331)
Q Consensus       205 ~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA  284 (331)
                      .++.++..+|.++.. .+++++|+.+|+++++++|+++.++..++.+++. .|++++|+.+|+++++++|++..++.+++
T Consensus         7 ~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~   84 (91)
T 1na3_A            7 NSAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLG   84 (91)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            457788899988765 9999999999999999999999999999999988 99999999999999999999999999999


Q ss_pred             HHHHHcC
Q 020094          285 KFLWDAG  291 (331)
Q Consensus       285 ~~L~~lG  291 (331)
                      .++...|
T Consensus        85 ~~~~~~g   91 (91)
T 1na3_A           85 NAKQKQG   91 (91)
T ss_dssp             HHHHHHC
T ss_pred             HHHHhcC
Confidence            9987654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.31  E-value=1e-11  Score=113.80  Aligned_cols=122  Identities=11%  Similarity=0.021  Sum_probs=105.7

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILS  246 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~------n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~~al~  246 (331)
                      .+.+|...+++++|+.+|++++.+.+.      .+.++.++|.++.. .|++++|+.+|++|+++.|..      +.++.
T Consensus        43 a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~  121 (292)
T 1qqe_A           43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-GGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (292)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            456888899999999999999998542      25688899999665 999999999999999998854      46788


Q ss_pred             HHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          247 LYADLIWQAH-KDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       247 ~yA~ll~~~~-Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +++.++.. . |++++|+.+|++|+++.|.+      ..++.++|.++..+|++++|...++.
T Consensus       122 ~lg~~~~~-~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~  183 (292)
T 1qqe_A          122 ELGEILEN-DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (292)
T ss_dssp             HHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHH-hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            88888877 7 99999999999999998854      56789999999999999999988873

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=2.9e-11  Score=96.18  Aligned_cols=100  Identities=16%  Similarity=0.100  Sum_probs=93.0

Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC  277 (331)
Q Consensus       201 ~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~  277 (331)
                      ..+|.+...+..+|..+.. .+++++|+++|+++++++|++   ..++..++.+++. .+++++|+.+|+++++++|++.
T Consensus        22 ~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~   99 (148)
T 2dba_A           22 TPGASSVEQLRKEGNELFK-CGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDV   99 (148)
T ss_dssp             CTTCCCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCH
T ss_pred             ccchHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCH
Confidence            3578899999999988765 999999999999999999998   8999999999888 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          278 YVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       278 ~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      .+++.++.++...+++++|...++.
T Consensus       100 ~~~~~~a~~~~~~~~~~~A~~~~~~  124 (148)
T 2dba_A          100 KALYRRSQALEKLGRLDQAVLDLQR  124 (148)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999999999999999988873

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.30  E-value=1.6e-12  Score=128.07  Aligned_cols=115  Identities=11%  Similarity=0.019  Sum_probs=109.0

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------------GNILSLYA  249 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d---------------~~al~~yA  249 (331)
                      ...++++|+.+|++++..+|+++..+.++|.+++. .++|++|+.+|++|++++|++               ..+|.+++
T Consensus       246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~-~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla  324 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFK-GGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA  324 (457)
T ss_dssp             EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence            44678899999999999999999999999999776 999999999999999999999               79999999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+++. ++++++|+.+|++|++++|++..+++++|.+|..++++++|...++
T Consensus       325 ~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~  375 (457)
T 1kt0_A          325 MCYLK-LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE  375 (457)
T ss_dssp             HHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            99998 9999999999999999999999999999999999999999998887

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.29  E-value=1.9e-11  Score=116.35  Aligned_cols=118  Identities=19%  Similarity=0.196  Sum_probs=101.4

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCC
Q 020094          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---AHKD  258 (331)
Q Consensus       184 ~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~--~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~---~~Gd  258 (331)
                      ...++|++|+.+|+++++++|+++.++.+++.+++.  ..+++++|++.|++|++++|+++.++..++..+..   ..++
T Consensus       149 ~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~  228 (472)
T 4g1t_A          149 CGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEE  228 (472)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC-----
T ss_pred             HccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhH
Confidence            345679999999999999999999999999977543  35788999999999999999999999888876544   2467


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +++|+.+|++++.++|.+..++.++|.+|...|++++|...++
T Consensus       229 ~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~  271 (472)
T 4g1t_A          229 EGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK  271 (472)
T ss_dssp             -CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence            8899999999999999999999999999999999999998877

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.28  E-value=1.8e-11  Score=120.66  Aligned_cols=130  Identities=14%  Similarity=0.157  Sum_probs=117.0

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~-~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      +.....+++.++...+++++|..+|+++++++|.++ .+|.+|+.++.. .|++++|.++|++|++..|.+..++...+.
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~  398 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAAL  398 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHH-hcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence            345677899999999999999999999999999996 699999998665 899999999999999999988888766666


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +.+...|++++|..+|+++++.+|+++.+|..++.++...|+.++|...++.
T Consensus       399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~  450 (530)
T 2ooe_A          399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER  450 (530)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred             HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence            6555589999999999999999999999999999999999999999988873

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.28  E-value=7.3e-11  Score=107.53  Aligned_cols=124  Identities=11%  Similarity=0.040  Sum_probs=105.9

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAI---LANPSDG----  242 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erAL---eldP~d~----  242 (331)
                      ..+++.+|...+++++|+.+|++++...+..      ..++.++|.++.. .|++++|+++|++|+   +..|++.    
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~  196 (293)
T 2qfc_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDV  196 (293)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence            4567888899999999999999999876544      5688899999766 999999999999999   6677654    


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCchHH-HHhhh
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD------DCYVLASYAKFLWDAGDDEEE-EQDNE  301 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~------d~~vl~~LA~~L~~lG~~eEa-~~~~~  301 (331)
                      .++.++|.+++. +|++++|+.+|++|+++.++      -..++.++|.++...|++++| ...++
T Consensus       197 ~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~  261 (293)
T 2qfc_A          197 KVRYNHAKALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK  261 (293)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            688899999998 99999999999999998652      278899999999999999999 54344

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.27  E-value=3.1e-11  Score=93.33  Aligned_cols=97  Identities=12%  Similarity=0.154  Sum_probs=88.9

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 020094          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD-------C  277 (331)
Q Consensus       205 ~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d-------~  277 (331)
                      ..+..+..+|.++.. .+++++|+.+|+++++.+|+++.++..++.+++. .|++++|+.+|+++++++|.+       .
T Consensus         2 ~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~   79 (131)
T 1elr_A            2 KQALKEKELGNDAYK-KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIA   79 (131)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHH
Confidence            346778889988766 9999999999999999999999999999999988 999999999999999999877       8


Q ss_pred             HHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          278 YVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       278 ~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      .+++.+|.++...|++++|...++..
T Consensus        80 ~~~~~la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           80 KAYARIGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            99999999999999999999888733

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.26  E-value=2e-11  Score=114.57  Aligned_cols=128  Identities=10%  Similarity=0.030  Sum_probs=111.9

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---  242 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n-------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---  242 (331)
                      .....++|.+|...+++++|+.+|++++.+.+..       ..++.++|.++.. .|++++|+++|++|+++.+...   
T Consensus       143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~  221 (383)
T 3ulq_A          143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLD-LKQYEDAISHFQKAYSMAEAEKQPQ  221 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHcCChH
Confidence            3467899999999999999999999999985443       4578889988665 9999999999999999866433   


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          243 ---NILSLYADLIWQAHKDASRAESYFDQAVK-----SA-PDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       243 ---~al~~yA~ll~~~~Gd~deA~~yfekAL~-----ld-P~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                         .++.++|.++.. +|++++|+.+|++|++     .+ |....++.++|.++...|++++|...++.
T Consensus       222 ~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  289 (383)
T 3ulq_A          222 LMGRTLYNIGLCKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSK  289 (383)
T ss_dssp             HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence               578889999998 9999999999999999     56 77889999999999999999999887763

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.25  E-value=6.8e-11  Score=92.88  Aligned_cols=92  Identities=18%  Similarity=0.171  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 020094          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLAS  282 (331)
Q Consensus       209 ~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~---~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d---~~vl~~  282 (331)
                      .++.+|..+.. .|++++|+.+|+++++.+|+++   .+++.++.+++. .|++++|+.+|+++++.+|++   ..+++.
T Consensus         4 ~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (129)
T 2xev_A            4 TAYNVAFDALK-NGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLK   81 (129)
T ss_dssp             CHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred             HHHHHHHHHHH-hCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence            45677878666 9999999999999999999998   789899999998 999999999999999999999   899999


Q ss_pred             HHHHHHHcCCchHHHHhhhh
Q 020094          283 YAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       283 LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +|.++...|++++|...++.
T Consensus        82 la~~~~~~g~~~~A~~~~~~  101 (129)
T 2xev_A           82 LGLSQYGEGKNTEAQQTLQQ  101 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHH
Confidence            99999999999999988873

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.25  E-value=5.4e-11  Score=98.71  Aligned_cols=93  Identities=17%  Similarity=0.073  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILA------------------NPSDGNILSLYADLIWQAHKDASRAESYFDQ  268 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALel------------------dP~d~~al~~yA~ll~~~~Gd~deA~~yfek  268 (331)
                      +..+...|..++. .|+|++|+.+|.+||.+                  +|.+..++.+++.+++. .|++++|+.++++
T Consensus        11 a~~~~~~G~~~~~-~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~   88 (162)
T 3rkv_A           11 VEALRQKGNELFV-QKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSE   88 (162)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence            4556778888776 99999999999999999                  78888999999999998 9999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          269 AVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       269 AL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +++++|++..+++.+|.+|..+|++++|...++
T Consensus        89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~  121 (162)
T 3rkv_A           89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLK  121 (162)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHH
Confidence            999999999999999999999999999998877

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.24  E-value=6.4e-11  Score=103.46  Aligned_cols=94  Identities=20%  Similarity=0.132  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------DGN-----ILSLYADLIWQAHKDASRAESYFDQAVKS--  272 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-------d~~-----al~~yA~ll~~~~Gd~deA~~yfekAL~l--  272 (331)
                      ...+.+.|..++. .|+|++|+++|++||+++|+       +..     +|.+++.++.. .|++++|+.+|++||++  
T Consensus        11 a~~~~~~G~~l~~-~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n   88 (159)
T 2hr2_A           11 AYLALSDAQRQLV-AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN   88 (159)
T ss_dssp             HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence            4556788888776 99999999999999999999       544     99999999998 99999999999999999  


Q ss_pred             -----CCCCHHHH----HHHHHHHHHcCCchHHHHhhhh
Q 020094          273 -----APDDCYVL----ASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       273 -----dP~d~~vl----~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                           +|++..+|    ++.|.+|..+|+++||...++.
T Consensus        89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~k  127 (159)
T 2hr2_A           89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKK  127 (159)
T ss_dssp             HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHH
Confidence                 99999999    9999999999999999988873

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.24  E-value=2.6e-11  Score=110.56  Aligned_cols=123  Identities=11%  Similarity=0.021  Sum_probs=103.1

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILA-------NPSDGN  243 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALel-------dP~d~~  243 (331)
                      .+++.+|...+++++|+.+|++++...+..      ..++.++|.++.. .|++++|+++|++|++.       .+....
T Consensus       119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  197 (293)
T 3u3w_A          119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVK  197 (293)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccchhHHHH
Confidence            357888888889999999999999975443      3368899988766 99999999999999953       223456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC-chHHHHhhh
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGD-DEEEEQDNE  301 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~-~eEa~~~~~  301 (331)
                      ++.+++.+++. +|++++|+.+|++|+++.+..      +.++.++|.++..+|+ +++|...++
T Consensus       198 ~~~nlg~~y~~-~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~  261 (293)
T 3u3w_A          198 VRYNHAKALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK  261 (293)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence            78899999998 999999999999999997643      7899999999999996 488887665

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.24  E-value=2.4e-11  Score=113.21  Aligned_cols=124  Identities=9%  Similarity=0.052  Sum_probs=112.2

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNIL  245 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~----~~l~nLA~~L~~~~gd~ekAee~~erALel------dP~d~~al  245 (331)
                      ....|..+...+++++|+.+|+++++.+|+++    .++..+|.++.. .|++++|+++|++++++      +|....++
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFY-LGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            45788999999999999999999999999997    578889988766 99999999999999998      68888999


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------chHHHHhhh
Q 020094          246 SLYADLIWQAHKDASRAESYFDQAVKS------APDDCYVLASYAKFLWDAGD-----------------DEEEEQDNE  301 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekAL~l------dP~d~~vl~~LA~~L~~lG~-----------------~eEa~~~~~  301 (331)
                      ..++.+++. .|++++|+.+|++++++      .|....++.+++.++...|+                 +++|...++
T Consensus       130 ~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          130 GNLGNTLKV-MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            999999988 99999999999999999      56677899999999999999                 888877665

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.24  E-value=1.7e-10  Score=93.41  Aligned_cols=94  Identities=17%  Similarity=-0.005  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF  286 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~  286 (331)
                      +..+..+|..+.. .+++++|+.+|+++++++|+++.++..++.++.. .|++++|+.+|+++++++|.+..++..+|.+
T Consensus        13 ~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFK-AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            4567888888666 9999999999999999999999999999999988 9999999999999999999999999999999


Q ss_pred             HHHcCCchHHHHhhhh
Q 020094          287 LWDAGDDEEEEQDNEE  302 (331)
Q Consensus       287 L~~lG~~eEa~~~~~~  302 (331)
                      +...|++++|...++.
T Consensus        91 ~~~~~~~~~A~~~~~~  106 (166)
T 1a17_A           91 NMALGKFRAALRDYET  106 (166)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHH
Confidence            9999999999988873

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.24  E-value=2.7e-10  Score=101.40  Aligned_cols=122  Identities=16%  Similarity=0.096  Sum_probs=81.9

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSLY  248 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~----~gd~ekAee~~erALeldP~d~~al~~y  248 (331)
                      +....++|.+|...+++++|+.+|+++++  |+++.+++++|.++ ..    .+++++|+++|++|++++  ++.++..+
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~-~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~l   80 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLY-YQGQGVEKNLKKAASFYAKACDLN--YSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHH-HHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHH-HcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence            33445667777777777777777777776  66677777777663 34    667777777777777764  66666666


Q ss_pred             HHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHHhhh
Q 020094          249 ADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGDDEEEEQDNE  301 (331)
Q Consensus       249 A~ll~~~---~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~----lG~~eEa~~~~~  301 (331)
                      +.++...   .+++++|+.+|+++++.+  +..++.+++.+|..    .++.++|...++
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~  138 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFT  138 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence            5554421   567777777777777663  66777777777777    777777766665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.23  E-value=6e-11  Score=92.28  Aligned_cols=89  Identities=12%  Similarity=0.065  Sum_probs=76.7

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Q 020094          202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDCYV  279 (331)
Q Consensus       202 ~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP--~d~~v  279 (331)
                      .+|+++.+++++|.++.. .|++++|+.+|+++++++|+++.+|..++.++.. .|++++|+.+|+++++++|  .+...
T Consensus         2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~   79 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQKD   79 (100)
T ss_dssp             ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred             CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCchhH
Confidence            489999999999999776 9999999999999999999999999999999988 9999999999999999987  56666


Q ss_pred             HHHHHHHHHHcCC
Q 020094          280 LASYAKFLWDAGD  292 (331)
Q Consensus       280 l~~LA~~L~~lG~  292 (331)
                      ...+..++...+.
T Consensus        80 ~~~l~~~l~~~~~   92 (100)
T 3ma5_A           80 LSELQDAKLKAEG   92 (100)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccc
Confidence            6777776665444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.23  E-value=3e-11  Score=101.40  Aligned_cols=127  Identities=11%  Similarity=0.031  Sum_probs=106.9

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCC----
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIE------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---NPS----  240 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~------~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALel---dP~----  240 (331)
                      ....++|.+|...+++++|+.+|++++.      ..+....++.++|.++.. .|++++|+++|++++++   .++    
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~  105 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-AGNWDAARRCFLEERELLASLPEDPLA  105 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            3467889999999999999999999999      455567788999988766 99999999999999998   443    


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DD----CYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       241 d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP--~d----~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      ...++.+++.+++. .|++++|+.+|++++++.+  .+    ..++.+++.++...|++++|...+++
T Consensus       106 ~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  172 (203)
T 3gw4_A          106 ASANAYEVATVALH-FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLR  172 (203)
T ss_dssp             HHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            35667788888888 9999999999999998743  23    23568999999999999999877663

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.22  E-value=1.1e-10  Score=107.22  Aligned_cols=97  Identities=14%  Similarity=0.047  Sum_probs=92.0

Q ss_pred             CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020094          204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY  283 (331)
Q Consensus       204 P~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~L  283 (331)
                      |.++..+..+|..++. .|++++|+.+|++|++++|+++.++.++|.+++. .|++++|+.+|++|++++|++..+++++
T Consensus         1 p~~a~~~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l   78 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFL   78 (281)
T ss_dssp             CCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            6788899999999776 9999999999999999999999999999999998 9999999999999999999999999999


Q ss_pred             HHHHHHcCCchHHHHhhhh
Q 020094          284 AKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       284 A~~L~~lG~~eEa~~~~~~  302 (331)
                      |.+|...|++++|...++.
T Consensus        79 g~~~~~~g~~~~A~~~~~~   97 (281)
T 2c2l_A           79 GQCQLEMESYDEAIANLQR   97 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHH
Confidence            9999999999999988773

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.22  E-value=4.5e-11  Score=110.30  Aligned_cols=124  Identities=11%  Similarity=0.052  Sum_probs=106.7

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------G  242 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~--n----~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~  242 (331)
                      ...|++.+|...+++++|+.+|++++.+.+.  +    ..++.++|.++ .. +++++|+++|++|+++.|..      .
T Consensus        78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~-~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~  155 (307)
T 2ifu_A           78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-EP-LDLSKAVHLYQQAAAVFENEERLRQAA  155 (307)
T ss_dssp             HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-TT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-Hc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence            4568899999999999999999999998543  2    45678888885 43 99999999999999998754      5


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++.+++.++.. +|++++|+.+|++++++.|.+      ..++..++.++...|++++|...++
T Consensus       156 ~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~  219 (307)
T 2ifu_A          156 ELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR  219 (307)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            788889999888 999999999999999997743      3578889999999999999999887

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.22  E-value=2.4e-11  Score=111.61  Aligned_cols=126  Identities=13%  Similarity=-0.010  Sum_probs=111.4

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSD------G  242 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~------~l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~  242 (331)
                      ...++|.+|...+++++|+.+|++++.+.+....      ++.++|.++.. .|++++|+.+|++++++.|..      .
T Consensus       189 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~  267 (406)
T 3sf4_A          189 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEA  267 (406)
T ss_dssp             HHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence            4678999999999999999999999998766544      78899988766 999999999999999998876      7


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      .++..++.++.. .|++++|+.+|++++++.+..      ..++..++.++...|++++|...+++
T Consensus       268 ~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  332 (406)
T 3sf4_A          268 QSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  332 (406)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            788889998888 999999999999999996643      67899999999999999999877663

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.19  E-value=1.2e-11  Score=94.47  Aligned_cols=91  Identities=14%  Similarity=0.133  Sum_probs=81.3

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILSLYA  249 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~~al~~yA  249 (331)
                      ..++|.++...+++++|+.+|+++++++|+++.++.++|.++.. .|++++|+++|+++++++|++      ..++..++
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~   85 (111)
T 2l6j_A            7 QKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRLE   85 (111)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999776 999999999999999999999      88888888


Q ss_pred             HHHHHHcCCHHHHHHHHHH
Q 020094          250 DLIWQAHKDASRAESYFDQ  268 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfek  268 (331)
                      .++.. .|++++|+..|++
T Consensus        86 ~~~~~-~~~~~~a~~~~~~  103 (111)
T 2l6j_A           86 LAQGA-VGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHH-HHCCCCCSSSSSS
T ss_pred             HHHHH-HHhHhhhHhHHHH
Confidence            87777 7887777766554

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.19  E-value=2.9e-11  Score=91.91  Aligned_cols=90  Identities=13%  Similarity=0.095  Sum_probs=70.5

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~-~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      .+.|..+...+++++|+.+|+++++.+|+++. ++.++|.++.. .|++++|+++|+++++++|+++.++..        
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            35677788888888888888888888888888 88888887655 888888888888888888888877632        


Q ss_pred             cCCHHHHHHHHHHHHHhCCCC
Q 020094          256 HKDASRAESYFDQAVKSAPDD  276 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d  276 (331)
                       +.+.+|+.+|++++..+|++
T Consensus        75 -~~~~~a~~~~~~~~~~~p~~   94 (99)
T 2kc7_A           75 -KMVMDILNFYNKDMYNQLEH   94 (99)
T ss_dssp             -HHHHHHHHHHCCTTHHHHCC
T ss_pred             -HHHHHHHHHHHHHhccCccc
Confidence             34577888888888777754

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.18  E-value=8.2e-11  Score=103.92  Aligned_cols=113  Identities=8%  Similarity=0.063  Sum_probs=100.2

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNILSL  247 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~----~~l~nLA~~L~~~~gd~ekAee~~erALel------dP~d~~al~~  247 (331)
                      -.|..+...+++++|+.+|++++..+|+++    .++..+|.++.. .|++++|++++++++++      .|..+.++..
T Consensus        10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A           10 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            457889999999999999999999999995    677788988765 99999999999999988      5566788888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 020094          248 YADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGD  292 (331)
Q Consensus       248 yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~  292 (331)
                      ++.+++. .|++++|+.+|++++++.+..      ..++..++.++...|+
T Consensus        89 l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           89 LGNTLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            9998888 999999999999999997633      4489999999999999

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.17  E-value=3e-11  Score=112.57  Aligned_cols=125  Identities=12%  Similarity=-0.039  Sum_probs=109.4

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSD------G  242 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~------~l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~  242 (331)
                      ...++|.+|...+++++|+.+|++++++.+....      ++.++|.++.. .|++++|+++|++++.+.+..      .
T Consensus       225 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~  303 (411)
T 4a1s_A          225 ACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIF-LGQFEDAAEHYKRTLALAVELGEREVEA  303 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            5678999999999999999999999999875443      78889988665 999999999999999998854      7


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++..++.+++. .|++++|+.+|++++++.+..      ..++..++.++...|++++|...++
T Consensus       304 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          304 QSCYSLGNTYTL-LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            788889998888 999999999999999996522      5689999999999999999986555

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.17  E-value=4.3e-11  Score=105.70  Aligned_cols=125  Identities=13%  Similarity=-0.008  Sum_probs=109.1

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------G  242 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~------~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~  242 (331)
                      ...+++.+|...+++++|+.+|++++...+...      .++.++|.++.. .|++++|+.+|++++.+.+..      .
T Consensus       185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (338)
T 3ro2_A          185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIF-LGEFETASEYYKKTLLLARQLKDRAVEA  263 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            467889999999999999999999998865432      378888988765 999999999999999988765      7


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++..++.+++. .|++++|+.+|++++++.+..      ..++..++.++...|++++|...++
T Consensus       264 ~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (338)
T 3ro2_A          264 QSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE  327 (338)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            788888888888 999999999999999986632      5688999999999999999998877

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.16  E-value=1e-09  Score=97.62  Aligned_cols=124  Identities=19%  Similarity=0.121  Sum_probs=81.1

Q ss_pred             CCcccccchHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCH
Q 020094          171 GGSGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDG  242 (331)
Q Consensus       171 g~~~~~~N~A~~y~s----~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~----~gd~ekAee~~erALeldP~d~  242 (331)
                      ++.....+++.+|..    .+++++|+.+|++++..+  ++.++.++|.++. .    .+++++|+++|++|++.+  ++
T Consensus        72 ~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~--~~  146 (273)
T 1ouv_A           72 NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYH-DGKVVTRDFKKAVEYFTKACDLN--DG  146 (273)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTT--CH
T ss_pred             CCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHhcC--cH
Confidence            344445666777777    777777777777776653  6677777776643 3    567777777777777765  45


Q ss_pred             HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHHhhh
Q 020094          243 NILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGDDEEEEQDNE  301 (331)
Q Consensus       243 ~al~~yA~ll~~~---~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~----lG~~eEa~~~~~  301 (331)
                      .++..++.++...   .+++++|+.+|+++++.  .+..++.+++.+|..    .++.++|...++
T Consensus       147 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~  210 (273)
T 1ouv_A          147 DGCTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYS  210 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence            6665665555431   56777777777777765  346667777777777    777777776665

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.16  E-value=1.2e-10  Score=107.09  Aligned_cols=124  Identities=8%  Similarity=0.038  Sum_probs=109.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNIL  245 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~----~~l~nLA~~L~~~~gd~ekAee~~erALel------dP~d~~al  245 (331)
                      ..+.|.++...+++++|+.+|++++..+|+++    .++..+|.++.. .|++++|+.+|++|+.+      .|..+.++
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   90 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFY-LHDYAKALEYHHHDLTLARTIGDQLGEAKAS   90 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            45789999999999999999999999999995    577889988766 99999999999999988      45567888


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC--------------------chHHHHh
Q 020094          246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGD--------------------DEEEEQD  299 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~--------------------~eEa~~~  299 (331)
                      ..++.+++. .|++++|+.+|++++++.|..      ..++..++.++...|+                    +++|...
T Consensus        91 ~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~  169 (406)
T 3sf4_A           91 GNLGNTLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF  169 (406)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            889998888 999999999999999997733      5589999999999999                    8888776


Q ss_pred             hh
Q 020094          300 NE  301 (331)
Q Consensus       300 ~~  301 (331)
                      ++
T Consensus       170 ~~  171 (406)
T 3sf4_A          170 YE  171 (406)
T ss_dssp             HH
T ss_pred             HH
Confidence            65

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.16  E-value=7.2e-11  Score=110.71  Aligned_cols=125  Identities=13%  Similarity=-0.023  Sum_probs=106.9

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHh---CCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEA---NPG---NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------DGNI  244 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~---nP~---n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-------d~~a  244 (331)
                      ..|.++...+++++|+.+|++++.+   .++   .+.++.++|.++.. .|++++|+.++++|+++.+.       .+.+
T Consensus       108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  186 (383)
T 3ulq_A          108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYY-MKQTYFSMDYARQAYEIYKEHEAYNIRLLQC  186 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence            3678899999999999999999997   333   56789999999776 99999999999999998554       3468


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094          245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGDDEEEEQDNEESQ  304 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~------~vl~~LA~~L~~lG~~eEa~~~~~~~~  304 (331)
                      +.++|.++.. .|++++|+.+|++|+++.+...      .++.++|.++...|++++|...+++..
T Consensus       187 ~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al  251 (383)
T 3ulq_A          187 HSLFATNFLD-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI  251 (383)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            8888888888 9999999999999999966332      589999999999999999998777443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.15  E-value=1.2e-09  Score=99.40  Aligned_cols=125  Identities=10%  Similarity=-0.019  Sum_probs=103.9

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALL------LGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNI  244 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~------l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~~a  244 (331)
                      .+.+..+...+++++|+++|++++...+.....      +..+|.++. ..+++++|+++|++|+++.+..      ..+
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHH-TSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            356778899999999999999999998876543      445565544 3789999999999999876654      668


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          245 LSLYADLIWQAHKDASRAESYFDQAV---KSAPDDC----YVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~yfekAL---~ldP~d~----~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      +..+|.+++. .|++++|+.+|++|+   +..|++.    .++.++|.+|...|++++|...++..
T Consensus       158 ~~~lg~~y~~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka  222 (293)
T 2qfc_A          158 ENAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            8889998888 999999999999999   5566543    68999999999999999999877643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.13  E-value=6e-10  Score=82.17  Aligned_cols=79  Identities=19%  Similarity=0.205  Sum_probs=73.6

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...++|.+|...+++++|+.+|++++..+|+++.++.++|.++.. .+++++|+++|+++++++|+++.++..++.++..
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~   89 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK   89 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999766 9999999999999999999999999988887765

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.13  E-value=3.9e-11  Score=94.96  Aligned_cols=81  Identities=19%  Similarity=0.127  Sum_probs=73.8

Q ss_pred             cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094          221 RGDFAKAEELCGRAILA---NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       221 ~gd~ekAee~~erALel---dP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      .|++++|+.+|++|+++   +|+++.++..++.+++. .|++++|+.+|+++++++|++..+++++|.++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            68899999999999999   69999999999999998 999999999999999999999999999999999999999999


Q ss_pred             Hhhhh
Q 020094          298 QDNEE  302 (331)
Q Consensus       298 ~~~~~  302 (331)
                      ..++.
T Consensus        82 ~~~~~   86 (117)
T 3k9i_A           82 ELLLK   86 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87773

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.13  E-value=1.6e-10  Score=108.58  Aligned_cols=130  Identities=16%  Similarity=-0.049  Sum_probs=111.8

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPG-------NALLLGNYARFLKEVRGDFAKAEELCGRAILANP------  239 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~-------n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP------  239 (331)
                      .....++|.+|...+++++|+.+|++++.+.+.       .+.++.++|.++.. .|++++|+++|++|+++.+      
T Consensus       141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~  219 (378)
T 3q15_A          141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD-FKHYDKALPHLEAALELAMDIQNDR  219 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            346789999999999999999999999998553       24567789988665 9999999999999998743      


Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094          240 SDGNILSLYADLIWQAHKDASRAESYFDQAVK-----SAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQ  304 (331)
Q Consensus       240 ~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~-----ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~  304 (331)
                      ....++.++|.++.. +|++++|+.+|++|++     .+|....++.++|.++.+.|+.++|...++...
T Consensus       220 ~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  288 (378)
T 3q15_A          220 FIAISLLNIANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGL  288 (378)
T ss_dssp             HHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            134678889998888 9999999999999999     788779999999999999999999998887433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.13  E-value=2.6e-10  Score=112.40  Aligned_cols=127  Identities=12%  Similarity=0.048  Sum_probs=112.9

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ....+++.++...+++++|+.+|+++++..|.+..++...+.+.+...|++++|..+|+++++.+|+++.+|..|+.++.
T Consensus       357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          357 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            35678899999999999999999999999999888888777765555899999999999999999999999999999998


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchHHHHhhh
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~----~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      . .|++++|..+|++|+...|.++    .+|..+..+....|+.+.+.+..+
T Consensus       437 ~-~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~  487 (530)
T 2ooe_A          437 H-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  487 (530)
T ss_dssp             T-TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred             h-CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            8 9999999999999999977554    499999999999999888876554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.11  E-value=2e-10  Score=100.84  Aligned_cols=125  Identities=12%  Similarity=0.099  Sum_probs=93.9

Q ss_pred             CCcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG----DFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g----d~ekAee~~erALeldP~d~~al~  246 (331)
                      |+..-..+++.+|...+++++|+.+|+++++.  +++.++++||.++..  +    |+++|+++|++|++  +.++.+++
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~--~g~~~~~~~A~~~~~~A~~--~g~~~a~~   89 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR--NPQQADYPQARQLAEKAVE--AGSKSGEI   89 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS--STTSCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc--CCCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence            44555667888888888888888888888764  578888888877543  5    78888888888855  56788887


Q ss_pred             HHHHHHHHH---cCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCchHHHHhhh
Q 020094          247 LYADLIWQA---HKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWD----AGDDEEEEQDNE  301 (331)
Q Consensus       247 ~yA~ll~~~---~Gd~deA~~yfekAL~ldP--~d~~vl~~LA~~L~~----lG~~eEa~~~~~  301 (331)
                      +++.++..-   .+++++|+.+|++|++..|  .++.++++++.+|..    .++.++|...++
T Consensus        90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            777666531   4678888888888888777  347788888888888    777888877776

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.08  E-value=9.2e-11  Score=110.93  Aligned_cols=103  Identities=12%  Similarity=-0.001  Sum_probs=58.2

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...|+|.+|...+++++|+.+|+++|+++|+++.+++++|.++.. .+++++|+.+|++|++++|++..++..++.+...
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~  310 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ  310 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHTTC------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            457999999999999999999999999999999999999999766 9999999999999999999999999888888665


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHH
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~  278 (331)
                      ..++.+++..+|++++...|++..
T Consensus       311 ~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          311 EKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCC
Confidence            478889999999999999997653

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.08  E-value=3.9e-10  Score=98.90  Aligned_cols=126  Identities=13%  Similarity=0.034  Sum_probs=106.1

Q ss_pred             CcccccchHHHHHhCC----CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCC--CCH
Q 020094          172 GSGFSGSNNNYSNNNH----GSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANP--SDG  242 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~g----d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~---~~gd~ekAee~~erALeldP--~d~  242 (331)
                      +..-..|++.+|.. +    ++++|+.+|++++  +++++.++++||.++..   +.+|+++|+++|++|++.+|  +++
T Consensus        49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~  125 (212)
T 3rjv_A           49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV  125 (212)
T ss_dssp             CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH
T ss_pred             CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH
Confidence            44556788888888 6    8999999999995  56899999999988643   26799999999999999998  458


Q ss_pred             HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CchHHHHhhh
Q 020094          243 NILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA-G-----DDEEEEQDNE  301 (331)
Q Consensus       243 ~al~~yA~ll~~~---~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l-G-----~~eEa~~~~~  301 (331)
                      .++++++.++..-   .+++++|+.+|++|+++ |.+..++++++.+|... +     +.++|..+++
T Consensus       126 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~  192 (212)
T 3rjv_A          126 DAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN  192 (212)
T ss_dssp             HHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence            9998888877652   46899999999999999 77888999999999875 2     7888888876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.07  E-value=3.7e-10  Score=104.12  Aligned_cols=123  Identities=15%  Similarity=0.130  Sum_probs=102.1

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--D----GNIL  245 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~--d----~~al  245 (331)
                      ..+.+|...+++++|+.+|++++.+.+..      ..++.++|.++.. .|++++|+.+|++|+++.+.  +    ..++
T Consensus        41 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~  119 (307)
T 2ifu_A           41 KAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKD-LQRMPEAVQYIEKASVMYVENGTPDTAAMAL  119 (307)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCGGGGHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            44678999999999999999999997643      4577888888655 89999999999999998543  2    4567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d------~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      .+++.++..  |++++|+.+|++|+++.|..      ..++.++|.+|..+|++++|...+++.
T Consensus       120 ~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  181 (307)
T 2ifu_A          120 DRAGKLMEP--LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE  181 (307)
T ss_dssp             HHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            677776643  99999999999999998743      578999999999999999999877743

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.05  E-value=2.5e-09  Score=98.18  Aligned_cols=98  Identities=19%  Similarity=0.134  Sum_probs=89.7

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLA  281 (331)
Q Consensus       202 ~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~  281 (331)
                      .-|++...+..+|..+.. .|++++|+..|+++++++|+++.++..++.++.. .|++++|+.+|+++++.+|+....+.
T Consensus       112 ~lp~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~-~g~~~~A~~~l~~~~~~~p~~~~~~~  189 (287)
T 3qou_A          112 VLPREEELXAQQAMQLMQ-ESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIA-LNRSEDAEAVLXTIPLQDQDTRYQGL  189 (287)
T ss_dssp             HSCCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH-TTCHHHHHHHHTTSCGGGCSHHHHHH
T ss_pred             HcCCchhhHHHHHHHHHh-CCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHH-CCCHHHHHHHHHhCchhhcchHHHHH
Confidence            349999999999998766 9999999999999999999999999999999998 99999999999999999998788888


Q ss_pred             HHHHHHHHcCCchHHHHhhh
Q 020094          282 SYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       282 ~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ..+..+...++.+++...++
T Consensus       190 ~~~~~l~~~~~~~~a~~~l~  209 (287)
T 3qou_A          190 VAQIELLXQAADTPEIQQLQ  209 (287)
T ss_dssp             HHHHHHHHHHTSCHHHHHHH
T ss_pred             HHHHHHHhhcccCccHHHHH
Confidence            88888888899888877766

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.05  E-value=9.1e-10  Score=100.25  Aligned_cols=124  Identities=11%  Similarity=-0.022  Sum_probs=99.9

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALL------LGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNIL  245 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~------l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~~al  245 (331)
                      +.+..+...+++++|+.+|++++...+.++..      +..+|.++. ..+++++|+++|++|+.+.+..      ..++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~  158 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL-KKVDYEYCILELKKLLNQQLTGIDVYQNLYIE  158 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHT-TSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence            34677888999999999999999988887763      224565543 3779999999999999976543      3368


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          246 SLYADLIWQAHKDASRAESYFDQAVKSA-------PDDCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekAL~ld-------P~d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      .++|.++.. .|++++|+.+|++|++..       +....++.++|.+|...|++++|...+++.
T Consensus       159 ~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a  222 (293)
T 3u3w_A          159 NAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA  222 (293)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            888888888 999999999999999631       233468899999999999999998777633

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.03  E-value=6.1e-09  Score=106.29  Aligned_cols=117  Identities=12%  Similarity=0.019  Sum_probs=104.8

Q ss_pred             HHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          183 SNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       183 y~s~gd~-ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd----------~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +...+++ ++|+++|.++|..||++..+|+.-+.++.. .++          +++|++++.++++.+|++..+|...+++
T Consensus        38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~-l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~  116 (567)
T 1dce_A           38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL  116 (567)
T ss_dssp             HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            3445555 889999999999999999999999988776 555          9999999999999999999999999999


Q ss_pred             HHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CchHHHHhhh
Q 020094          252 IWQAHK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG-DDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~G--d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG-~~eEa~~~~~  301 (331)
                      +.. .+  ++++|+.+++++++++|+|..+|.+.+.++...+ .+++|.+.++
T Consensus       117 l~~-l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~  168 (567)
T 1dce_A          117 LSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (567)
T ss_dssp             HHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             HHH-cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence            988 99  7799999999999999999999999999999999 6766665554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=99.03  E-value=1e-09  Score=91.89  Aligned_cols=118  Identities=11%  Similarity=-0.000  Sum_probs=96.3

Q ss_pred             HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcC
Q 020094          184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL------ANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       184 ~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALe------ldP~d~~al~~yA~ll~~~~G  257 (331)
                      ...|++++|+++++.+....+..+.++..+|.++.. .|++++|+.+|+++++      ..|....++.+++.++.. .|
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~g   80 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAF-MDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-AG   80 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-TT
T ss_pred             cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cC
Confidence            346899999997666544333678899999998766 9999999999999999      555677888889998888 99


Q ss_pred             CHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCchHHHHhhhhh
Q 020094          258 DASRAESYFDQAVKS---APD----DCYVLASYAKFLWDAGDDEEEEQDNEES  303 (331)
Q Consensus       258 d~deA~~yfekAL~l---dP~----d~~vl~~LA~~L~~lG~~eEa~~~~~~~  303 (331)
                      ++++|+.+|++++++   .++    ...++.++|.++...|++++|...+++.
T Consensus        81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999999999999   443    3567899999999999999998877643

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.02  E-value=1.9e-09  Score=84.32  Aligned_cols=76  Identities=14%  Similarity=0.047  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          226 KAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       226 kAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +|+++|+++++.+|+++.++..++.+++. .|++++|+.+|+++++++|++..+++.+|.++...|++++|...++.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            58899999999999999999999999998 99999999999999999999999999999999999999999887763

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.00  E-value=1e-08  Score=97.39  Aligned_cols=123  Identities=12%  Similarity=-0.027  Sum_probs=108.0

Q ss_pred             cchHHHHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-
Q 020094          177 GSNNNYSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLI-  252 (331)
Q Consensus       177 ~N~A~~y~s~gd~-ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g--d~ekAee~~erALeldP~d~~al~~yA~ll-  252 (331)
                      .++.......+++ ++|+.++.++|.+||++..+|+.-+.++.. .+  +++++++++.++|+.+|++..+|.....++ 
T Consensus        36 ~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~-l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~  114 (306)
T 3dra_A           36 MGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKN-LPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIG  114 (306)
T ss_dssp             HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHH-cccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHH
Confidence            3444455566666 799999999999999999999999988766 67  999999999999999999999999888888 


Q ss_pred             ---HHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch--HHHHhhh
Q 020094          253 ---WQAH---KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDE--EEEQDNE  301 (331)
Q Consensus       253 ---~~~~---Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~e--Ea~~~~~  301 (331)
                         .. .   +++++++.+++++++.+|++..+|...+.++...+.++  ++...++
T Consensus       115 ~~~~~-l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~  170 (306)
T 3dra_A          115 QIMEL-NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVD  170 (306)
T ss_dssp             HHHHH-TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHH
T ss_pred             HHHHh-ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHH
Confidence               44 5   78999999999999999999999999999999999987  7765554

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.99  E-value=1.9e-09  Score=100.03  Aligned_cols=125  Identities=14%  Similarity=0.111  Sum_probs=104.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCC
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PSD  241 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~------~~l~nLA~~L~~~~gd~ekAee~~erALeld--------P~d  241 (331)
                      ..+++.+|...|++++|+.+|++++.+.|...      .++.++|.++.. .|++++|+.+|++++++.        |..
T Consensus        56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFA-QGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            56788899999999999999999999866432      235678888665 999999999999999875        344


Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD-----DCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       242 ~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~-----d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      ..++.+++.+++. .|++++|+.+|++++++.+.     ...++..++.++...|++++|...+++
T Consensus       135 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  199 (373)
T 1hz4_A          135 EFLVRIRAQLLWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNR  199 (373)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5677778888888 99999999999999999874     246788999999999999999877763

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.97  E-value=7e-10  Score=110.18  Aligned_cols=123  Identities=12%  Similarity=0.015  Sum_probs=99.0

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL-  251 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l-  251 (331)
                      .....|+|.+|...+++++|+.+|+++++++|+++.+++++|.++.. .|++++|+++|++|++++|++..++..++.+ 
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~-~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~  118 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LGKFRAALRDYETVVKVKPHDKDAKMKYQECN  118 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            45578999999999999999999999999999999999999999766 9999999999999999999999999888887 


Q ss_pred             -HHHHcCCHHHHHHHHH-----------HHHHhCCCC-----------HHHHHHHHHHHHHcCCchHHH
Q 020094          252 -IWQAHKDASRAESYFD-----------QAVKSAPDD-----------CYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       252 -l~~~~Gd~deA~~yfe-----------kAL~ldP~d-----------~~vl~~LA~~L~~lG~~eEa~  297 (331)
                       +.. +|++++|+++++           ++++++|+.           ...+..+...+...+...+++
T Consensus       119 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~itl~~l~~lie~l~~~~~l~e~~  186 (477)
T 1wao_1          119 KIVK-QKAFERAIAGDEHKRSVVDSLDIESMTIEDEYSGPKLEDGKVTISFMKELMQWYKDQKKLHRKC  186 (477)
T ss_dssp             HHHH-HHHHCCC------CCSTTTCCTTSSCCCCTTCCSCCCGGGSCCHHHHHHHHHHHHTCCCCCHHH
T ss_pred             HHHH-HHHHHHHhccccccchhHhhhhhhhccccccccccccccccccHHHHHHHHHHHHcCCCCCHHH
Confidence             665 899999999999           888887743           233445555566656555443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.96  E-value=2.6e-09  Score=102.92  Aligned_cols=93  Identities=12%  Similarity=0.004  Sum_probs=87.1

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAIL----------------ANPSDGNILSLYADLIWQAHKDASRAESYFDQAV  270 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALe----------------ldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL  270 (331)
                      +..+..+|..++. .+++++|+++|++|++                ++|.+..+|.++|.+++. ++++++|+.+|++|+
T Consensus       223 a~~~~~~g~~~~~-~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al  300 (370)
T 1ihg_A          223 SEDLKNIGNTFFK-SQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEAL  300 (370)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence            4557888988766 9999999999999999                889999999999999998 999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          271 KSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       271 ~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +++|++..+++.+|.+|..++++++|...++
T Consensus       301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~  331 (370)
T 1ihg_A          301 EIDPSNTKALYRRAQGWQGLKEYDQALADLK  331 (370)
T ss_dssp             TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HhCchhHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9999999999999999999999999998887

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.95  E-value=9.8e-10  Score=95.88  Aligned_cols=80  Identities=13%  Similarity=0.078  Sum_probs=73.5

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA----------SRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~----------deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      .+.|++|++.|++|++++|+++.+|.+++.++.. .+++          ++|+.+|++||+++|++..+|+++|.+|..+
T Consensus        15 ~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           15 ILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            5679999999999999999999999999998887 7664          6999999999999999999999999999988


Q ss_pred             C-----------CchHHHHhhh
Q 020094          291 G-----------DDEEEEQDNE  301 (331)
Q Consensus       291 G-----------~~eEa~~~~~  301 (331)
                      |           ++++|.+.++
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~  115 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQ  115 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHH
Confidence            5           8999988777

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.95  E-value=3.1e-09  Score=99.74  Aligned_cols=98  Identities=13%  Similarity=-0.009  Sum_probs=87.1

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANP---G---NALLLGNYARFLKEVRGDFAKAEELCGRAIL-----ANPSDGN  243 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP---~---n~~~l~nLA~~L~~~~gd~ekAee~~erALe-----ldP~d~~  243 (331)
                      ...|+|.+|...+++++|+.+|++++.+.+   +   ...++.++|.++.. .|++++|+++|++|++     .+|..+.
T Consensus       184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~  262 (378)
T 3q15_A          184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPK  262 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence            356899999999999999999999999743   1   24578899988766 9999999999999999     8898899


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP  274 (331)
                      ++..+|.+++. .|++++|+.+|++++++.+
T Consensus       263 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~~  292 (378)
T 3q15_A          263 VLFGLSWTLCK-AGQTQKAFQFIEEGLDHIT  292 (378)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence            99999999998 9999999999999999854

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.95  E-value=1.1e-08  Score=77.45  Aligned_cols=77  Identities=16%  Similarity=0.133  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHH
Q 020094          211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL--ASYAKFL  287 (331)
Q Consensus       211 ~nLA~~L~~~~gd~ekAee~~erALeldP~d~~-al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl--~~LA~~L  287 (331)
                      ++.|..+.. .+++++|+++|+++++.+|+++. ++..+|.+++. .|++++|+.+|+++++++|++..++  ..+..++
T Consensus         4 ~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~   81 (99)
T 2kc7_A            4 LKTIKELIN-QGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQARKMVMDIL   81 (99)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-cCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            455666555 89999999999999999999999 99999999988 9999999999999999999998887  4444444


Q ss_pred             HH
Q 020094          288 WD  289 (331)
Q Consensus       288 ~~  289 (331)
                      ..
T Consensus        82 ~~   83 (99)
T 2kc7_A           82 NF   83 (99)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.94  E-value=4.8e-09  Score=97.23  Aligned_cols=126  Identities=12%  Similarity=0.144  Sum_probs=104.0

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-----LLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NIL  245 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~-----~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~------~al  245 (331)
                      ...+.++...+++++|+.++++++...|.+..     ++.++|.++.. .|++++|++++++++.+.|...      .++
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            45677888999999999999999999886532     56777877655 8999999999999999876432      335


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094          246 SLYADLIWQAHKDASRAESYFDQAVKSA--------PDDCYVLASYAKFLWDAGDDEEEEQDNEESQ  304 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekAL~ld--------P~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~  304 (331)
                      ..++.+++. .|++++|+.+|++++++.        |....++.+++.++...|++++|...+++..
T Consensus        97 ~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  162 (373)
T 1hz4_A           97 IQQSEILFA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGI  162 (373)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            678888888 999999999999999986        3345678889999999999999998887433

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.90  E-value=9.1e-09  Score=100.79  Aligned_cols=124  Identities=16%  Similarity=0.127  Sum_probs=95.6

Q ss_pred             CcccccchHHHHHhCC---CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          172 GSGFSGSNNNYSNNNH---GSSSTDAYYEKMIEANPGNALLLGNYARFLKEV---RGDFAKAEELCGRAILANPSDGNIL  245 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~g---d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~---~gd~ekAee~~erALeldP~d~~al  245 (331)
                      ++.-..+++.+|...+   ++++|+.+|++++..+|.++..++++|.++...   .+|+++|+++|++|+   |+++.++
T Consensus       175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~  251 (452)
T 3e4b_A          175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASW  251 (452)
T ss_dssp             CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHH
T ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHH
Confidence            3335678888888888   888888888888888888888888888775331   158888888888887   8888888


Q ss_pred             HHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CchHHHHhhh
Q 020094          246 SLYADLIW--QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG-----DDEEEEQDNE  301 (331)
Q Consensus       246 ~~yA~ll~--~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG-----~~eEa~~~~~  301 (331)
                      ++++.+++  ...+++++|+.+|++|++.  .+..+++++|.+|. .|     +.++|..+++
T Consensus       252 ~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~  311 (452)
T 3e4b_A          252 VSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFE  311 (452)
T ss_dssp             HHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence            88888754  3377888888888888764  47888888888887 44     7777777776

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.90  E-value=1.4e-09  Score=102.82  Aligned_cols=125  Identities=10%  Similarity=-0.117  Sum_probs=107.8

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-C-HHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-D-GNILSLYADL  251 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-d-~~al~~yA~l  251 (331)
                      .+...||..|...|+|++|.+.|+.++..+|++. ..+.+|.+++. .+++++|+.+|++++...+. . ..++++++.+
T Consensus       103 dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~-~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~a  180 (282)
T 4f3v_A          103 AITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGA-AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVA  180 (282)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHH-TTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHH-cCCHHHHHHHHHHhhccCCcccHHHHHHHHHHH
Confidence            3566799999999999999999999999999999 88999988665 99999999999988775322 1 3477778888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          252 IWQAHKDASRAESYFDQAVKSA--PD-DCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       252 l~~~~Gd~deA~~yfekAL~ld--P~-d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +.. .|++++|+.+|++++...  |. ..++++++|.++.++|+.+||...++
T Consensus       181 l~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~  232 (282)
T 4f3v_A          181 AAN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLE  232 (282)
T ss_dssp             HHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            877 999999999999998654  54 66799999999999999999998887

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.88  E-value=8.5e-09  Score=105.24  Aligned_cols=100  Identities=13%  Similarity=0.106  Sum_probs=94.7

Q ss_pred             cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHH
Q 020094          189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-DASRAESY  265 (331)
Q Consensus       189 ~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g--d~ekAee~~erALeldP~d~~al~~yA~ll~~~~G-d~deA~~y  265 (331)
                      +++++++|.++++.+|++..+|+.-+.++.. .+  ++++|++++.+++++||.|..+|...+.++.. .+ .+++|+++
T Consensus        89 ~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~-l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~-l~~~~~~el~~  166 (567)
T 1dce_A           89 VKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHH-cCCChHHHHHH
Confidence            8999999999999999999999999999766 88  77999999999999999999999888888887 88 89999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          266 FDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       266 fekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      ++++++.+|.|..+|.+.+.++..+
T Consensus       167 ~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          167 TDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCCccHHHHHHHHHHhh
Confidence            9999999999999999999999986

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.88  E-value=4.4e-09  Score=105.99  Aligned_cols=122  Identities=10%  Similarity=0.006  Sum_probs=100.0

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH--
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDG--  242 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~-----nP~n~---~~l~nLA~~L~~~~gd~ekAee~~erALel-----dP~d~--  242 (331)
                      +.+.-+...|+|++|+..|+++|++     .|+++   ..+.++|.++.. +|+|++|+.+|++++++     .|+++  
T Consensus       314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~  392 (490)
T 3n71_A          314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSY-LQAYEEASHYARRMVDGYMKLYHHNNAQL  392 (490)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            3445577899999999999999997     34554   557788888665 99999999999999976     45655  


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCchHHHHhhh
Q 020094          243 -NILSLYADLIWQAHKDASRAESYFDQAVKS-----APDDCY---VLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       243 -~al~~yA~ll~~~~Gd~deA~~yfekAL~l-----dP~d~~---vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       ..+.++|.+++. +|++++|+.+|++|+++     .|+++.   ++..++.++..++.+++|+..++
T Consensus       393 a~~l~nLa~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~  459 (490)
T 3n71_A          393 GMAVMRAGLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYH  459 (490)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             556778888888 99999999999999987     566654   55688899999999999987766

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.87  E-value=1e-08  Score=80.79  Aligned_cols=72  Identities=19%  Similarity=0.063  Sum_probs=66.8

Q ss_pred             CCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094          203 NPGNALLLGNYARFLKEVRGD---FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (331)
Q Consensus       203 nP~n~~~l~nLA~~L~~~~gd---~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d  276 (331)
                      +|+++.++..||.+++. .++   .++|..++++|+++||+++.++..+|..+++ .|+|++|+.+|+++++.+|.+
T Consensus         2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTT
T ss_pred             CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCC
Confidence            79999999999999876 444   7999999999999999999999999999998 999999999999999999974

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.87  E-value=9.2e-09  Score=81.26  Aligned_cols=99  Identities=10%  Similarity=0.019  Sum_probs=83.9

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DG  242 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~------d~  242 (331)
                      ...++|.+|...+++++|+.+|++++...+..      ..++.++|.++.. .+++++|++++++++++.+.      .+
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~  129 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence            45688999999999999999999999986543      5678889988766 99999999999999987432      25


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD  275 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~  275 (331)
                      .++..++.+++. .|++++|+.+|++++++...
T Consensus       130 ~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          130 RACWSLGNAYTA-LGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHH
Confidence            677788888888 99999999999999988653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.84  E-value=4.3e-08  Score=93.15  Aligned_cols=103  Identities=10%  Similarity=0.072  Sum_probs=51.5

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHH----HHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020094          188 GSSSTDAYYEKMIEANPGNALLLGNYARFL----KEVR---GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS  260 (331)
Q Consensus       188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L----~~~~---gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~d  260 (331)
                      .+++++.++.++|..||++..+|..-+.++    .. .   +++++++.++.++++.+|.|..+|...+.++.. .++++
T Consensus        84 ~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~-l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~-l~~~~  161 (306)
T 3dra_A           84 NLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMEL-NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDT-FDLHN  161 (306)
T ss_dssp             CHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHH-TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCTT
T ss_pred             cHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHh-ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcccC
Confidence            445555555555555555555555444444    22 2   445555555555555555555555444444444 44444


Q ss_pred             --HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          261 --RAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       261 --eA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                        +++.+++++++.+|.|..+|.+.+.++...+.
T Consensus       162 ~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~  195 (306)
T 3dra_A          162 DAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKH  195 (306)
T ss_dssp             CHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGG
T ss_pred             hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence              55555555555555555555555555444443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.83  E-value=5.4e-08  Score=94.83  Aligned_cols=121  Identities=12%  Similarity=0.056  Sum_probs=63.1

Q ss_pred             cccccchHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCHH
Q 020094          173 SGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-----GDFAKAEELCGRAILANPSDGN  243 (331)
Q Consensus       173 ~~~~~N~A~~y~s----~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~-----gd~ekAee~~erALeldP~d~~  243 (331)
                      .....+++.+|..    .+++++|+.+|+++++.  +++.+++++|.++.. .     +++++|+++|++|++.  +++.
T Consensus       255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~-~~~g~~~~~~~A~~~~~~a~~~--~~~~  329 (490)
T 2xm6_A          255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYDK-GAEGVAKNREQAISWYTKSAEQ--GDAT  329 (490)
T ss_dssp             HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHHH-CBTTBCCCHHHHHHHHHHHHHT--TCHH
T ss_pred             HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCcCCHHHHHHHHHHHHhc--CCHH
Confidence            3334455555555    55555666666555433  455555555555433 3     4555555555555554  2344


Q ss_pred             HHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHHhhh
Q 020094          244 ILSLYADLIWQAHK---DASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGDDEEEEQDNE  301 (331)
Q Consensus       244 al~~yA~ll~~~~G---d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~----lG~~eEa~~~~~  301 (331)
                      +++.++.+++. .|   ++++|+.+|++|++.  .+..++++++.+|..    .++.++|..+++
T Consensus       330 a~~~lg~~y~~-~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  391 (490)
T 2xm6_A          330 AQANLGAIYFR-LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMR  391 (490)
T ss_dssp             HHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            55455554444 33   455555555555554  345555555555555    455555555444

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.82  E-value=6.4e-08  Score=94.28  Aligned_cols=124  Identities=15%  Similarity=0.126  Sum_probs=107.8

Q ss_pred             CCcccccchHHHHHhC-----CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCH
Q 020094          171 GGSGFSGSNNNYSNNN-----HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILANPSDG  242 (331)
Q Consensus       171 g~~~~~~N~A~~y~s~-----gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g---d~ekAee~~erALeldP~d~  242 (331)
                      |+..-..+++.+|...     +++++|+.+|+++++.  +++.+++++|.++.. .+   ++++|+++|++|++.  +++
T Consensus       289 ~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~a~~~--~~~  363 (490)
T 2xm6_A          289 GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ--GDATAQANLGAIYFR-LGSEEEHKKAVEWFRKAAAK--GEK  363 (490)
T ss_dssp             TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHT--TCH
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHh-CCCcccHHHHHHHHHHHHHC--CCH
Confidence            5556677899999988     8999999999999886  578899999998765 45   899999999999997  679


Q ss_pred             HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHHhhh
Q 020094          243 NILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGDDEEEEQDNE  301 (331)
Q Consensus       243 ~al~~yA~ll~~~---~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~----lG~~eEa~~~~~  301 (331)
                      .++++++.++..-   .+++++|+.+|++|++.  .+..++.+++.+|..    .++.++|..+++
T Consensus       364 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  427 (490)
T 2xm6_A          364 AAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFD  427 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            9998888877642   58999999999999986  478999999999999    899999998887

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.80  E-value=2.8e-08  Score=97.32  Aligned_cols=115  Identities=17%  Similarity=0.137  Sum_probs=95.9

Q ss_pred             cchHHHHHhC----CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          177 GSNNNYSNNN----HGSSSTDAYYEKMIEANPGNALLLGNYARFLK--EVRGDFAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       177 ~N~A~~y~s~----gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~--~~~gd~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      .|++.+|...    +++++|+.+|++++   |+++.+++++|.+++  ...+|+++|+++|++|++.  +++.++++++.
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~  291 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK  291 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence            6788888665    68899999999987   899999999998854  4478999999999999875  48888888887


Q ss_pred             HHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHHhhh
Q 020094          251 LIWQAHK-----DASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGDDEEEEQDNE  301 (331)
Q Consensus       251 ll~~~~G-----d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~----lG~~eEa~~~~~  301 (331)
                      ++.  .|     ++++|+.+|++|.   +.+..+++++|.+|..    ..+.++|..+++
T Consensus       292 ~y~--~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~  346 (452)
T 3e4b_A          292 LYY--EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLL  346 (452)
T ss_dssp             HHH--HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred             HHH--cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence            666  45     8999999999998   8899999999988887    347888888877

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.79  E-value=6.1e-08  Score=94.18  Aligned_cols=115  Identities=10%  Similarity=0.020  Sum_probs=101.6

Q ss_pred             hHHHHHhC-CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          179 NNNYSNNN-HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       179 ~A~~y~s~-gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g-d~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      +-+..... ...++|++++.++|.+||++..+|+.-+.++.. .+ ++++++.++.++++.+|++..+|.....++....
T Consensus        59 ~~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~-l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~  137 (349)
T 3q7a_A           59 YFRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTS-LNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRIS  137 (349)
T ss_dssp             HHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhc
Confidence            33333344 445899999999999999999999999988776 66 6999999999999999999999999999888733


Q ss_pred             C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020094          257 K-DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDE  294 (331)
Q Consensus       257 G-d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~e  294 (331)
                      + ++++++.+++++++.+|+|..+|...+.++...+.++
T Consensus       138 ~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~  176 (349)
T 3q7a_A          138 PQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG  176 (349)
T ss_dssp             CSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred             CCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence            7 8999999999999999999999999999999988876

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.75  E-value=2.2e-07  Score=89.55  Aligned_cols=118  Identities=12%  Similarity=0.008  Sum_probs=100.2

Q ss_pred             HHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          182 YSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYAD  250 (331)
Q Consensus       182 ~y~s~gd~-ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd----------~ekAee~~erALeldP~d~~al~~yA~  250 (331)
                      .....+++ ++|+.++.++|.+||++.-+|+.-+.++.. .++          +++++.++.+++..+|.+..+|...++
T Consensus        38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w  116 (331)
T 3dss_A           38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW  116 (331)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            34456666 689999999999999999999988877655 333          789999999999999999999999988


Q ss_pred             HHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-hHHHHhhh
Q 020094          251 LIWQAHK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD-EEEEQDNE  301 (331)
Q Consensus       251 ll~~~~G--d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~-eEa~~~~~  301 (331)
                      ++.. .+  ++++++.++.++++.+|.|..+|.+.+.++...+.. +++...++
T Consensus       117 lL~~-l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~  169 (331)
T 3dss_A          117 LLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  169 (331)
T ss_dssp             HHHH-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHhc-cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence            8887 77  489999999999999999999999999999999984 56654443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.74  E-value=1.2e-07  Score=78.38  Aligned_cols=106  Identities=16%  Similarity=0.117  Sum_probs=89.3

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HKDASRAE  263 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~---~Gd~deA~  263 (331)
                      .++++|+.+|+++.+.+.....    +|.++.. ....++|+++|++|++.  .++.++++++.++..-   .+++++|+
T Consensus         9 ~d~~~A~~~~~~aa~~g~~~a~----lg~~y~~-g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNEMFGC----LSLVSNS-QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTCTTHH----HHHHTCT-TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCCHhhh----HHHHHHc-CCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            5789999999999998754444    7877544 67788899999999997  6899998888776641   57999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHHhhh
Q 020094          264 SYFDQAVKSAPDDCYVLASYAKFLWD----AGDDEEEEQDNE  301 (331)
Q Consensus       264 ~yfekAL~ldP~d~~vl~~LA~~L~~----lG~~eEa~~~~~  301 (331)
                      .+|++|.+.  .++..+++++.+|..    .++.++|..+++
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~  121 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE  121 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence            999999886  689999999999999    899999988887

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.74  E-value=3.4e-08  Score=76.47  Aligned_cols=64  Identities=20%  Similarity=0.225  Sum_probs=58.9

Q ss_pred             hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          237 ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       237 ldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+|+++.+++.+|.+++. .|++++|+.+|+++++++|++..+|+.+|.+|...|++++|...++
T Consensus         2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~   65 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA   65 (100)
T ss_dssp             ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            589999999999999998 9999999999999999999999999999999999999999988776

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.74  E-value=5.6e-08  Score=84.34  Aligned_cols=98  Identities=12%  Similarity=0.036  Sum_probs=86.5

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 020094          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILAN-P-SDGNILSLYADLIWQAHKDASRA  262 (331)
Q Consensus       188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g---d~ekAee~~erALeld-P-~d~~al~~yA~ll~~~~Gd~deA  262 (331)
                      ....+++.|.+.+..++.+.++.++||.+|.. ..   +.++++.+++.+++.+ | ++.++++++|..++. .++|++|
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~A   90 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA   90 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHHH
Confidence            45788999999999999999999999999876 55   6779999999999999 7 678999999999988 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          263 ESYFDQAVKSAPDDCYVLASYAKFL  287 (331)
Q Consensus       263 ~~yfekAL~ldP~d~~vl~~LA~~L  287 (331)
                      ++|++++++++|+|..+..-.-.+-
T Consensus        91 ~~y~~~lL~ieP~n~QA~~Lk~~ie  115 (152)
T 1pc2_A           91 LKYVRGLLQTEPQNNQAKELERLID  115 (152)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            9999999999999988766554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.72  E-value=1.6e-07  Score=90.56  Aligned_cols=101  Identities=13%  Similarity=-0.032  Sum_probs=76.6

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------
Q 020094          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILANPSDGNILSLYADLIWQAH----------  256 (331)
Q Consensus       188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd-~ekAee~~erALeldP~d~~al~~yA~ll~~~~----------  256 (331)
                      .+++++.+|.++++.+|.|..+|..-+.++.. .+. ++++++++.++|+.+|.|..+|...+.++.. .          
T Consensus       125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~-l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~-l~~~~~~~~~~  202 (331)
T 3dss_A          125 NWARELELCARFLEADERNFHCWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ-LHPQPDSGPQG  202 (331)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-HSCCC------
T ss_pred             cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hhhcccccccc
Confidence            36788888888888888888888777777655 666 5788888888888888888888777776665 4          


Q ss_pred             ----CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          257 ----KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       257 ----Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                          +.+++++.++.+++..+|+|..+|..+..++...
T Consensus       203 ~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~  240 (331)
T 3dss_A          203 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG  240 (331)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred             ccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence                4577888888888888888888887666666555

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.66  E-value=1.5e-07  Score=91.39  Aligned_cols=111  Identities=6%  Similarity=-0.017  Sum_probs=100.2

Q ss_pred             HHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094          181 NYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       181 ~~y~s~g-d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g-d~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd  258 (331)
                      .++...+ .+++++.++.++|..+|++..+|..-+.++....+ +++++++++.++++++|.|..+|.....++.. .+.
T Consensus        96 ~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~-l~~  174 (349)
T 3q7a_A           96 SLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSH-FST  174 (349)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcc
Confidence            4555666 58999999999999999999999999999877437 89999999999999999999999888888776 777


Q ss_pred             HH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          259 AS--------RAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       259 ~d--------eA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      ++        +++.+++++++.+|.|..+|.+.+.++..++.
T Consensus       175 ~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~  216 (349)
T 3q7a_A          175 LGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG  216 (349)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred             ccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence            77        99999999999999999999999999999986

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.66  E-value=3.1e-07  Score=72.49  Aligned_cols=79  Identities=13%  Similarity=0.100  Sum_probs=66.2

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILAN-------PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY  278 (331)
Q Consensus       206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeld-------P~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~  278 (331)
                      ++...+.+|.+++. .++|.+|+.+|++|++..       +..+.++..++.+++. +|++++|+.++++|++++|++..
T Consensus         4 sa~dc~~lG~~~~~-~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~   81 (104)
T 2v5f_A            4 TAEDCFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQR   81 (104)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             CHHHHHHHHHHHHH-ccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHH
Confidence            45566778888776 899999999999999863       3567888888888888 99999999999999999999998


Q ss_pred             HHHHHHHH
Q 020094          279 VLASYAKF  286 (331)
Q Consensus       279 vl~~LA~~  286 (331)
                      ++.+++.+
T Consensus        82 ~~~n~~~~   89 (104)
T 2v5f_A           82 ANGNLKYF   89 (104)
T ss_dssp             HHHHHHHH
T ss_pred             HHhhHHHH
Confidence            88888733

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.63  E-value=3.8e-07  Score=75.23  Aligned_cols=100  Identities=16%  Similarity=0.103  Sum_probs=83.8

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~---~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ++.+|.....+++|+.+|+++.+.  +++.+.+++|.++..   +.+|+++|+++|++|++.  .++.++++++.++..-
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            888888888999999999999887  789999999998654   268999999999999987  7899998888777642


Q ss_pred             ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          256 ---HKDASRAESYFDQAVKSAPDDCYVLASYA  284 (331)
Q Consensus       256 ---~Gd~deA~~yfekAL~ldP~d~~vl~~LA  284 (331)
                         .+++++|+.+|++|.+..  +.....+++
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~  136 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRLG--SEDACGILN  136 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred             CCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence               589999999999999974  455555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.60  E-value=1e-07  Score=90.90  Aligned_cols=89  Identities=13%  Similarity=0.179  Sum_probs=80.1

Q ss_pred             CCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCH
Q 020094          187 HGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAHKDA  259 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~----~gd~ekAee~~erALeldP~d-~~al~~yA~ll~~~~Gd~  259 (331)
                      .....|+..++++++++|+  +..++..+|.++..+    .|+.++|+++|+|||+++|+. ..+++.|+.++...++++
T Consensus       177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            4568999999999999999  777999999886552    499999999999999999975 999999999998745999


Q ss_pred             HHHHHHHHHHHHhCCC
Q 020094          260 SRAESYFDQAVKSAPD  275 (331)
Q Consensus       260 deA~~yfekAL~ldP~  275 (331)
                      ++|.+++++|++++|.
T Consensus       257 ~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          257 AGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHHHcCCCC
Confidence            9999999999999885

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.54  E-value=2.7e-07  Score=87.20  Aligned_cols=114  Identities=10%  Similarity=-0.127  Sum_probs=93.8

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEAN-PGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PS-DGNILSLYA  249 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~n-P~n-~~~l~nLA~~L~~~~gd~ekAee~~erALeld--P~-d~~al~~yA  249 (331)
                      ..++.+..+...+++++|+.+|++++... |.. ..+++++|.++.. .|++++|+.+|++++...  |. .+.+++.++
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~g  215 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAAN-LALFTEAERRLTEANDSPAGEACARAIAWYLA  215 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence            56788899999999999999999887653 221 3578999999766 999999999999999654  55 667888899


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020094          250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG  291 (331)
Q Consensus       250 ~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG  291 (331)
                      .++.. +|+.++|..+|+++++.+|+ ..++..|...-....
T Consensus       216 laL~~-lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~~~  255 (282)
T 4f3v_A          216 MARRS-QGNESAAVALLEWLQTTHPE-PKVAAALKDPSYRLK  255 (282)
T ss_dssp             HHHHH-HTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCCCC
T ss_pred             HHHHH-cCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCCCC
Confidence            98888 99999999999999999998 887776654444333

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.51  E-value=4.5e-07  Score=89.98  Aligned_cols=95  Identities=13%  Similarity=0.054  Sum_probs=77.2

Q ss_pred             hCCCcHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 020094          185 NNHGSSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDG---NILSLY  248 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~-----nP~n~~---~l~nLA~~L~~~~gd~ekAee~~erALel-----dP~d~---~al~~y  248 (331)
                      ..|+|++|+..|+++|++     .|+++.   .+.++|.++.. +|+|++|+.+|++++++     .|+++   ..++++
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL  388 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL  388 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            347889999999999996     456655   56788888665 99999999999999976     45555   457788


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 020094          249 ADLIWQAHKDASRAESYFDQAVKS-----APDDCYVLA  281 (331)
Q Consensus       249 A~ll~~~~Gd~deA~~yfekAL~l-----dP~d~~vl~  281 (331)
                      |.+++. +|++++|+.+|++|+++     .|+++.+..
T Consensus       389 a~~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          389 GRLYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            888888 99999999999999987     677776643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.49  E-value=5.9e-07  Score=85.96  Aligned_cols=119  Identities=12%  Similarity=0.015  Sum_probs=99.5

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHH-
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----DGNILSLY-  248 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP--~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-----d~~al~~y-  248 (331)
                      .-+|..|...|++++|+.+|.+.|..+|  ++.+++...+.++.. .|+.+.|.+.++++.+.+|+     +.... .+ 
T Consensus       104 ~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~-~La  181 (310)
T 3mv2_B          104 YLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-NNNVSTASTIFDNYTNAIEDTVSGDNEMIL-NLA  181 (310)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCccccccchHHHH-HHH
Confidence            5688899999999999999999999997  888888888888665 99999999999999999993     44443 34 


Q ss_pred             -HHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          249 -ADLIWQAHK--DASRAESYFDQAVKSAPD--DCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       249 -A~ll~~~~G--d~deA~~yfekAL~ldP~--d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       +++... .|  ++.+|..+|+++.+..|+  ....+++   ++..+|+++||++.++
T Consensus       182 ea~v~l~-~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~  235 (310)
T 3mv2_B          182 ESYIKFA-TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVE  235 (310)
T ss_dssp             HHHHHHH-HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHH
T ss_pred             HHHHHHH-hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHH
Confidence             444554 55  899999999999888886  4556666   8999999999999887

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.47  E-value=3.3e-07  Score=89.87  Aligned_cols=112  Identities=8%  Similarity=-0.021  Sum_probs=88.3

Q ss_pred             CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cC--C---HHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020094          188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEV--RG--D---FAKAEELCG--RAILANPSDGNILSLYADLIWQAHKD  258 (331)
Q Consensus       188 d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~--~g--d---~ekAee~~e--rALeldP~d~~al~~yA~ll~~~~Gd  258 (331)
                      ++.+|+.+|++|++++|+++.++..++.++...  .+  .   .....+.++  .++.++|.++.++..++..++. .|+
T Consensus       214 ~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~-~gd  292 (372)
T 3ly7_A          214 SLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALV-KGK  292 (372)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHH-HTC
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHh-CCC
Confidence            458999999999999999999998777554321  11  1   111111222  2346789999999888888887 899


Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       259 ~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +++|+.++++|++++| +...|..+|.++...|+.++|...++
T Consensus       293 ~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~  334 (372)
T 3ly7_A          293 TDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYL  334 (372)
T ss_dssp             HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999997 57788899999999999999998886

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.44  E-value=1.3e-06  Score=68.73  Aligned_cols=72  Identities=13%  Similarity=0.095  Sum_probs=65.0

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEAN-------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~n-------P~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA  249 (331)
                      ..+|..++..++|..|+..|++|+...       +..+.++.+||.+++. .|++++|+.++++|++++|++..++.++.
T Consensus         9 ~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            468899999999999999999999973       3568899999999876 99999999999999999999999987776

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.43  E-value=5.4e-07  Score=89.07  Aligned_cols=105  Identities=10%  Similarity=-0.053  Sum_probs=81.8

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDG---NI  244 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~-----nP~n~~---~l~nLA~~L~~~~gd~ekAee~~erALel-----dP~d~---~a  244 (331)
                      .-+...++|++|+..|++++++     .|+++.   .+.++|.++.. +|+|++|+.++++++++     .|+++   ..
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            3456778999999999999986     355554   56788888655 99999999999999966     45555   45


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHH
Q 020094          245 LSLYADLIWQAHKDASRAESYFDQAVKS-----APDDCYVL---ASYAKFL  287 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~yfekAL~l-----dP~d~~vl---~~LA~~L  287 (331)
                      ++++|.+++. +|++++|+.+|++|+++     .|+++.+.   .+++.+.
T Consensus       374 l~nLa~~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          374 VMKVGKLQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            6678888888 99999999999999987     67776654   3344444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.37  E-value=1.1e-06  Score=91.81  Aligned_cols=125  Identities=12%  Similarity=0.077  Sum_probs=108.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEA-NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~-nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      -..|+++..+.++.+.|..+|.+|++. .+....++..+|.+.+...+++++|..+|+++++..|+++.+|..|+.+.+.
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~  516 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY  516 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            345677878889999999999999998 5566788888887765544569999999999999999999999999999888


Q ss_pred             HcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          255 AHKDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP---~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       .|+.++|..+|++|+...|   +...+|..+..+..+.|+.+.+.+..+
T Consensus       517 -~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~  565 (679)
T 4e6h_A          517 -VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK  565 (679)
T ss_dssp             -HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             9999999999999999998   456899999999999999988876655

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.33  E-value=4.5e-06  Score=87.33  Aligned_cols=59  Identities=15%  Similarity=0.089  Sum_probs=31.7

Q ss_pred             cchHHHHHhCCCcHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTD-AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL  236 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~-e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALe  236 (331)
                      ..||.++...++.++|. ..|++++...|.+..++..||.+... .+++++|.++|++++.
T Consensus       347 ~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          347 FNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHHHH
Confidence            44555555555555554 55555555555555555555555333 5555555555555554

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.31  E-value=1.4e-06  Score=81.75  Aligned_cols=125  Identities=11%  Similarity=0.034  Sum_probs=102.0

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPS------DGN  243 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~------~l~nLA~~L~~~~gd~ekAee~~erALeldP~------d~~  243 (331)
                      ..+++..|...|++++|+++|++++...+....      +...++.+. ...+++++|++++++++...+.      ...
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFE-QVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHC-SCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            468999999999999999999999998665433      334455553 3378999999999999986432      367


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKS------APDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~l------dP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      ++..++.++.. .|++++|..++++++..      .+....++..++.++...+++++|...++.
T Consensus       137 ~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  200 (434)
T 4b4t_Q          137 LSIKLATLHYQ-KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTA  200 (434)
T ss_dssp             HHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence            78889998888 99999999999999987      234467999999999999999999887763

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=1.4e-06  Score=81.66  Aligned_cols=126  Identities=6%  Similarity=-0.004  Sum_probs=100.2

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-----------------LLGNYARFLKEVRGDFAKAEELCGRAILANP  239 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~-----------------~l~nLA~~L~~~~gd~ekAee~~erALeldP  239 (331)
                      ..-|+-+...++|++|++.|.+++..+|...+                 ++.++|.++.. .|++++|.+++.+++...+
T Consensus         8 l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~-~~~~~~a~~~~~~~~~~~~   86 (434)
T 4b4t_Q            8 LEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVT-MGAKDKLREFIPHSTEYMM   86 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHTHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence            34567788889999999999999999987643                 47889988766 9999999999999998876


Q ss_pred             CCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHHhhhhhh
Q 020094          240 SDGN------ILSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGDDEEEEQDNEESQ  304 (331)
Q Consensus       240 ~d~~------al~~yA~ll~~~~Gd~deA~~yfekAL~ldP------~d~~vl~~LA~~L~~lG~~eEa~~~~~~~~  304 (331)
                      ....      ++..++.++.. .+++++|+.++++++...+      .-..++.++|.++...|++++|...+++..
T Consensus        87 ~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  162 (434)
T 4b4t_Q           87 QFAKSKTVKVLKTLIEKFEQV-PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL  162 (434)
T ss_dssp             TSCHHHHHHHHHHHHHHHCSC-CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HccchHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            5432      23233343344 7999999999999998754      226788999999999999999988776443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.28  E-value=2.8e-06  Score=66.63  Aligned_cols=71  Identities=13%  Similarity=-0.011  Sum_probs=61.8

Q ss_pred             CcccccchHHHHHhCCC---cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094          172 GSGFSGSNNNYSNNNHG---SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN  243 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd---~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~  243 (331)
                      ++.....+|.++...++   .++|..+++++|+++|+++.++..+|.+++. .|+|++|+.+|+++++.+|.++.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCcc
Confidence            44556678888865554   6999999999999999999999999999777 99999999999999999998443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.24  E-value=4.8e-06  Score=79.40  Aligned_cols=98  Identities=13%  Similarity=0.045  Sum_probs=78.6

Q ss_pred             CCCCHHHHHHHHHHHHH--H--cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 020094          203 NPGNALLLGNYARFLKE--V--RG------DFAKAEELCGRAILANPS--DGNILSLYADLIWQAH-----KDASRAESY  265 (331)
Q Consensus       203 nP~n~~~l~nLA~~L~~--~--~g------d~ekAee~~erALeldP~--d~~al~~yA~ll~~~~-----Gd~deA~~y  265 (331)
                      +|++++.++..|.....  .  .+      ...+|...++|||++||+  ++.+|..++.+++. .     |+.++|+++
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~-vPp~~gGd~ekA~~~  226 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA-APESFGGGMEKAHTA  226 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH-SCTTTTCCHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh-CCCccCCCHHHHHHH
Confidence            56667766666644322  1  13      368899999999999999  77799777766655 4     999999999


Q ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHc-CCchHHHHhhh
Q 020094          266 FDQAVKSAPD-DCYVLASYAKFLWDA-GDDEEEEQDNE  301 (331)
Q Consensus       266 fekAL~ldP~-d~~vl~~LA~~L~~l-G~~eEa~~~~~  301 (331)
                      |+||++++|+ +..+++.+|.+|... ++.++++..++
T Consensus       227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~  264 (301)
T 3u64_A          227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALD  264 (301)
T ss_dssp             HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            9999999996 499999999999985 88999888877

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.21  E-value=4.8e-06  Score=79.67  Aligned_cols=118  Identities=16%  Similarity=0.173  Sum_probs=93.9

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNILSLYADLIWQA  255 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP--~d~~al~~yA~ll~~~  255 (331)
                      -||.++.     ..|+.+|++.+...+.+...+..+|.++.. .|++++|+++|.+.|..+|  ++..++...+.++.. 
T Consensus        76 ~la~~~~-----~~a~~~l~~l~~~~~~~~~~~~~la~i~~~-~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~-  148 (310)
T 3mv2_B           76 LYVQFLD-----TKNIEELENLLKDKQNSPYELYLLATAQAI-LGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL-  148 (310)
T ss_dssp             HHHHHHT-----TTCCHHHHHTTTTSCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH-
T ss_pred             HHHHHhc-----ccHHHHHHHHHhcCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH-
Confidence            3566664     228899999998876777777788888766 8999999999999999997  888998778777777 


Q ss_pred             cCCHHHHHHHHHHHHHhCCC----CHHHHHHH--HHHHHHcC--CchHHHHhhhh
Q 020094          256 HKDASRAESYFDQAVKSAPD----DCYVLASY--AKFLWDAG--DDEEEEQDNEE  302 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~----d~~vl~~L--A~~L~~lG--~~eEa~~~~~~  302 (331)
                      +|+.++|.+.++++.+.+|+    +..++..+  +++....|  +.++|...++|
T Consensus       149 ~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~E  203 (310)
T 3mv2_B          149 NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEE  203 (310)
T ss_dssp             TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            99999999999999999993    33344444  44466556  89999888873

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.20  E-value=1.9e-06  Score=86.71  Aligned_cols=96  Identities=10%  Similarity=0.078  Sum_probs=78.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEA-----NPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDG  242 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~-----nP~n~---~~l~nLA~~L~~~~gd~ekAee~~erALel-----dP~d~  242 (331)
                      ..|+|.+|...|+|++|+.+|+++|++     -|++|   ..+++||.++.. +|+|++|+.+|++|+++     .|+++
T Consensus       354 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp  432 (490)
T 3n71_A          354 LSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHP  432 (490)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            779999999999999999999999987     35554   457889988766 99999999999999975     68887


Q ss_pred             HHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020094          243 NILS---LYADLIWQAHKDASRAESYFDQAVKSA  273 (331)
Q Consensus       243 ~al~---~yA~ll~~~~Gd~deA~~yfekAL~ld  273 (331)
                      .+..   +++.+..+ ++.+++|+..|.+|.+..
T Consensus       433 ~~~~~~~~l~~~~~e-~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          433 ITKDLEAMRMQTEME-LRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            6664   44444555 888999999999886543

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.11  E-value=4.1e-05  Score=76.51  Aligned_cols=127  Identities=13%  Similarity=0.094  Sum_probs=99.0

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------------------------
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL-----------------------------------  217 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L-----------------------------------  217 (331)
                      +-+-.+||.++...++.++|...|++++.. |.+..++..|+.+.                                   
T Consensus       213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~  291 (493)
T 2uy1_A          213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN  291 (493)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence            345678999999999999999999999999 99877776666541                                   


Q ss_pred             ----HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          218 ----KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       218 ----~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                          ....++.++|...|.+| +..+....+|..+|.+.+...++.++|...|+++++..|+++..+..++.++...|+.
T Consensus       292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~  370 (493)
T 2uy1_A          292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE  370 (493)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence                01145678899999999 4333466777777777776344799999999999999999888888888888888888


Q ss_pred             hHHHHhhh
Q 020094          294 EEEEQDNE  301 (331)
Q Consensus       294 eEa~~~~~  301 (331)
                      +.+...++
T Consensus       371 ~~aR~l~e  378 (493)
T 2uy1_A          371 ENARALFK  378 (493)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87766655

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.06  E-value=3.4e-05  Score=86.54  Aligned_cols=114  Identities=9%  Similarity=0.026  Sum_probs=86.1

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------------
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------------  240 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~------------  240 (331)
                      +...+++|..+...|++++|+.+|.++     +++..+...|.++.. .|+|++|+++|..|++.+++            
T Consensus      1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIeyL~mArk~~~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A         1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYLQMARKKARESYVETELIFALA 1178 (1630)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence            445668888888888888888888775     888888888888655 88888888888877755533            


Q ss_pred             ---------------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          241 ---------------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       241 ---------------d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                                     +...+..+|..++. .|+|++|..+|.+|        ..|..++.+|.++|++++|.+.++
T Consensus      1179 Kl~rleele~fI~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A         1179 KTNRLAELEEFINGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred             hhcCHHHHHHHHhCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence                           11233356676776 88888888888886        468888888888888888877665

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.01  E-value=4.4e-05  Score=64.17  Aligned_cols=97  Identities=11%  Similarity=0.023  Sum_probs=82.2

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD---FAKAEELCGRAILAN-P-SDGNILSLYADLIWQAHKDASR  261 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd---~ekAee~~erALeld-P-~d~~al~~yA~ll~~~~Gd~de  261 (331)
                      .....+...|.+.+..++.+..+.++||+.|.. -.+   ..+++.+++..+..+ | ..-++++.+|..++. .|+|++
T Consensus        15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~   92 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHH
Confidence            456788899999999999999999999999765 444   455999999999987 5 677888889999998 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          262 AESYFDQAVKSAPDDCYVLASYAK  285 (331)
Q Consensus       262 A~~yfekAL~ldP~d~~vl~~LA~  285 (331)
                      |+.|++..|+.+|+|..+..-...
T Consensus        93 A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           93 ALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHH
Confidence            999999999999999877544433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.97  E-value=2.1e-05  Score=78.81  Aligned_cols=100  Identities=10%  Similarity=0.041  Sum_probs=50.4

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW---  253 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~---  253 (331)
                      .++++.|+..|.+++|+.+|.++        ..+..+|.++.. .|+|++|++.|++|     +++.+|......+.   
T Consensus       126 ~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~-Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~  191 (449)
T 1b89_A          126 QQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVH-LGEYQAAVDGARKA-----NSTRTWKEVCFACVDGK  191 (449)
T ss_dssp             -----------CTTTHHHHHHHT--------TCHHHHHHHHHT-TTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHH-hccHHHHHHHHHHc-----CCchhHHHHHHHHHHcC
Confidence            34445555556666666666554        345555555544 56666666666665     24444444333333   


Q ss_pred             --------------------------HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          254 --------------------------QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       254 --------------------------~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                                                ++.|++++|+.+|++++.+++.+..++..++.+|.+-
T Consensus       192 ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky  254 (449)
T 1b89_A          192 EFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF  254 (449)
T ss_dssp             CHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhc
Confidence                                      3366666666666666666666666666666666543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.95  E-value=2e-05  Score=68.20  Aligned_cols=71  Identities=7%  Similarity=-0.069  Sum_probs=64.2

Q ss_pred             cccchHHHHHhCC---CcHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          175 FSGSNNNYSNNNH---GSSSTDAYYEKMIEAN-P-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       175 ~~~N~A~~y~s~g---d~ekA~e~yerAL~~n-P-~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~  246 (331)
                      -..|||-++....   ++++++.+++.+++.+ | ++.+.++++|..++. .++|++|.++++++++++|+|..+..
T Consensus        34 ~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           34 TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            4568999999987   7789999999999999 7 678999999988765 99999999999999999999999984

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.95  E-value=1.3e-05  Score=79.43  Aligned_cols=80  Identities=10%  Similarity=0.057  Sum_probs=67.9

Q ss_pred             cCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHH
Q 020094          221 RGDFAKAEELCGRAILA-----NPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS-----APDD---CYVLASYA  284 (331)
Q Consensus       221 ~gd~ekAee~~erALel-----dP~d~~a---l~~yA~ll~~~~Gd~deA~~yfekAL~l-----dP~d---~~vl~~LA  284 (331)
                      .|+|++|+.+|++++++     .|+++.+   +.+++.++.. +|+|++|+.+|++++++     .|++   ...+.++|
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            57899999999999985     5677654   5677888887 99999999999999987     4444   45788999


Q ss_pred             HHHHHcCCchHHHHhhh
Q 020094          285 KFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       285 ~~L~~lG~~eEa~~~~~  301 (331)
                      .+|+.+|+++||...++
T Consensus       390 ~~~~~qg~~~eA~~~~~  406 (433)
T 3qww_A          390 RLYMGLENKAAGEKALK  406 (433)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHH
Confidence            99999999999998777

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.90  E-value=5e-05  Score=85.24  Aligned_cols=63  Identities=14%  Similarity=0.074  Sum_probs=43.2

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       205 ~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP  274 (331)
                      +++.+|++||.++.. .|++++|+..|.+|     +|+..+...+.++.. .|++++|+++|..|.+..+
T Consensus      1103 n~p~vWsqLAKAql~-~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIeyL~mArk~~~ 1165 (1630)
T 1xi4_A         1103 NEPAVWSQLAKAQLQ-KGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVKYLQMARKKAR 1165 (1630)
T ss_pred             CCHHHHHHHHHHHHh-CCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhcc
Confidence            567777777777443 77777777777665     666666666666666 7777777777777666653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.89  E-value=0.00011  Score=73.45  Aligned_cols=121  Identities=12%  Similarity=0.100  Sum_probs=103.3

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      .-.+|+.++...++.+.|...|++| ...+....++..+|.+.+...++++.|..+|+++++..|+++..|..|+.+...
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~  366 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR  366 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            3567888988888999999999999 444446778888888776655689999999999999999999999899988777


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       .|+.++|...|+++    +....+|..+..+....|+.+.+.+.++
T Consensus       367 -~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~  408 (493)
T 2uy1_A          367 -IGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVD  408 (493)
T ss_dssp             -HTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             -cCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence             99999999999998    4578899999999999999888877565

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.89  E-value=4.6e-05  Score=74.69  Aligned_cols=74  Identities=11%  Similarity=-0.055  Sum_probs=64.8

Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC  277 (331)
Q Consensus       201 ~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~  277 (331)
                      ..+|.++.++..+|..+.. .|++++|+.++++|+.++|+ ..+|..++.++.. .|++++|++.|++|+.++|...
T Consensus       271 ~~~~~~a~~~~alal~~l~-~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALV-KGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSHH
T ss_pred             ccCCcCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcC
Confidence            4579999999999987655 89999999999999999975 6677677777777 9999999999999999999665

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.77  E-value=5.6e-05  Score=74.57  Aligned_cols=81  Identities=10%  Similarity=0.036  Sum_probs=67.9

Q ss_pred             HcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 020094          220 VRGDFAKAEELCGRAILA-----NPSDG---NILSLYADLIWQAHKDASRAESYFDQAVKS-----APDDC---YVLASY  283 (331)
Q Consensus       220 ~~gd~ekAee~~erALel-----dP~d~---~al~~yA~ll~~~~Gd~deA~~yfekAL~l-----dP~d~---~vl~~L  283 (331)
                      .+|+|++|+.+|++++++     .|+++   .++.+++.++.. +|++++|+.++++++++     .|+++   ..+.++
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL  377 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV  377 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred             hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence            379999999999999975     46665   456667777777 99999999999999987     34554   578899


Q ss_pred             HHHHHHcCCchHHHHhhh
Q 020094          284 AKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       284 A~~L~~lG~~eEa~~~~~  301 (331)
                      |.+|+..|++++|...++
T Consensus       378 a~~~~~~g~~~eA~~~~~  395 (429)
T 3qwp_A          378 GKLQLHQGMFPQAMKNLR  395 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHH
Confidence            999999999999998776

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.71  E-value=0.00019  Score=71.89  Aligned_cols=92  Identities=11%  Similarity=-0.012  Sum_probs=68.2

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHH------------------------------HHHHHHHHcCCHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGN------------------------------YARFLKEVRGDFA  225 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~n------------------------------LA~~L~~~~gd~e  225 (331)
                      ..++|.+|...|++++|+++|+++     +++..|..                              +..+ ++..|+++
T Consensus       151 ~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~-Yek~G~~e  224 (449)
T 1b89_A          151 FGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY-YQDRGYFE  224 (449)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHH-HHHTTCHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHH-HHHCCCHH
Confidence            457899999999999999999999     34544433                              2223 45589999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhC
Q 020094          226 KAEELCGRAILANPSDGNILSLYADLIWQA-HKDASRAESYFDQAVKSA  273 (331)
Q Consensus       226 kAee~~erALeldP~d~~al~~yA~ll~~~-~Gd~deA~~yfekAL~ld  273 (331)
                      +|+.++++++.+++....++..++.++-.- -++..++++.|...+.+.
T Consensus       225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~  273 (449)
T 1b89_A          225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIP  273 (449)
T ss_dssp             HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCc
Confidence            999999999999999999997776665430 345556666666555553

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.64  E-value=0.00042  Score=60.29  Aligned_cols=111  Identities=15%  Similarity=0.070  Sum_probs=90.7

Q ss_pred             chHHHHHhCCCc------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094          178 SNNNYSNNNHGS------SSTDAYYEKMIEANPGN--------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN  243 (331)
Q Consensus       178 N~A~~y~s~gd~------ekA~e~yerAL~~nP~n--------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~  243 (331)
                      +|.+.+.+.|+-      ++-++.|++|+..-|-.        ..+|..||.+ .. .+|.++|.+.|+.++.+.-.++.
T Consensus        18 ~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e-i~D~d~aR~vy~~a~~~hKkFAK   95 (161)
T 4h7y_A           18 SLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA-IQEPDDARDYFQMARANCKKFAF   95 (161)
T ss_dssp             HHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH-HHCGGGCHHHHHHHHHHCTTBHH
T ss_pred             HHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH-hcCHHHHHHHHHHHHHHhHHHHH
Confidence            466677777777      88899999999987753        4567777766 33 69999999999999999889999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      +|..+|.+-.. +|+..+|.+.+.+|+...|.....+.. |..-.+.|.
T Consensus        96 iwi~~AqFEiR-qgnl~kARkILg~AiG~~~k~~~~le~-a~~nl~~~~  142 (161)
T 4h7y_A           96 VHISFAQFELS-QGNVKKSKQLLQKAVERGAVPLEMLEI-ALRNLNLQK  142 (161)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCBCHHHHHH-HHHHHHTTC
T ss_pred             HHHHHHHHHHH-cccHHHHHHHHHHHhccCCCcHHHHHH-HHHhhhcCC
Confidence            99999999998 999999999999999999988876543 333444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.43  E-value=0.00065  Score=59.10  Aligned_cols=99  Identities=21%  Similarity=0.159  Sum_probs=82.8

Q ss_pred             HHhCCCCHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094          200 IEANPGNALLLGNYARFLKEVRGDF------AKAEELCGRAILANPS--------DGNILSLYADLIWQAHKDASRAESY  265 (331)
Q Consensus       200 L~~nP~n~~~l~nLA~~L~~~~gd~------ekAee~~erALeldP~--------d~~al~~yA~ll~~~~Gd~deA~~y  265 (331)
                      |-..|+|++.|..|...+.. .|+.      ++-...|+||+..-|-        ..+.|..||.+ .. .+|.++|...
T Consensus         6 ~~~~p~~yd~W~~yl~llE~-~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e-i~D~d~aR~v   82 (161)
T 4h7y_A            6 IMMMANNPEDWLSLLLKLEK-NSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA-IQEPDDARDY   82 (161)
T ss_dssp             ----CCSHHHHHHHHHHHHH-HTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH-HHCGGGCHHH
T ss_pred             eeeCCCCHHHHHHHHHHHHH-cCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH-hcCHHHHHHH
Confidence            45689999999999999766 5888      8999999999998775        55777778765 34 7999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          266 FDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       266 fekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |+.++.+...-+-+|..+|.|..+.|+...|.+.+.
T Consensus        83 y~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg  118 (161)
T 4h7y_A           83 FQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQ  118 (161)
T ss_dssp             HHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            999999977779999999999999999999977654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.33  E-value=0.0012  Score=58.01  Aligned_cols=80  Identities=16%  Similarity=0.160  Sum_probs=50.4

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------
Q 020094          221 RGDFAKAEELCGRAILANPSDGN---------ILSLYADLIWQAHKDASRAESYFDQAVKS-------------------  272 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~---------al~~yA~ll~~~~Gd~deA~~yfekAL~l-------------------  272 (331)
                      .+.|+.|+.....++.+..++++         ++..+|..++. .++|.+|+.+|++||++                   
T Consensus        33 ~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss  111 (167)
T 3ffl_A           33 AGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSAS  111 (167)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC---------------
T ss_pred             hhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCC
Confidence            45555555555554444333332         44445555555 55555555555555443                   


Q ss_pred             ------CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          273 ------APDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       273 ------dP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                            .+.+.++.+.++.||.+++++++|...++
T Consensus       112 ~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le  146 (167)
T 3ffl_A          112 TPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD  146 (167)
T ss_dssp             -----CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh
Confidence                  12345789999999999999999998887

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.19  E-value=0.0064  Score=52.10  Aligned_cols=80  Identities=15%  Similarity=0.005  Sum_probs=66.9

Q ss_pred             CCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          204 PGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       204 P~n~~~l~nLA~~L~~~~--gd~ekAee~~erALeldP-~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl  280 (331)
                      .-.+...++||+.|....  .+..+++.+++..+..+| ..-++++.+|..++. .|+|++|+.|.+..++.+|+|..+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            568899999999987622  235789999999999999 567888888888998 9999999999999999999998765


Q ss_pred             HHHH
Q 020094          281 ASYA  284 (331)
Q Consensus       281 ~~LA  284 (331)
                      .-..
T Consensus       115 ~Lk~  118 (144)
T 1y8m_A          115 ALKS  118 (144)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=97.14  E-value=0.0086  Score=59.92  Aligned_cols=113  Identities=17%  Similarity=0.036  Sum_probs=91.9

Q ss_pred             CCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHKDASRAES  264 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~-n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-d~~al~~yA~ll~~~~Gd~deA~~  264 (331)
                      +..++|.++|+++....-. |...+..+...+.. .|++++|+++|++..+..-. |...|..+...+.. .|+.++|..
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~-~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~  161 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVA-KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYE  161 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHH
Confidence            4568999999999886422 56667777777665 89999999999999876422 66777677777777 999999999


Q ss_pred             HHHHHHHhCC-CCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          265 YFDQAVKSAP-DDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       265 yfekAL~ldP-~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +|++..+..- -|..+|..+..+|.+.|+.++|...++
T Consensus       162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~  199 (501)
T 4g26_A          162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQ  199 (501)
T ss_dssp             HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            9999988744 488899999999999999999988776

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.99  E-value=0.0029  Score=53.62  Aligned_cols=81  Identities=15%  Similarity=-0.016  Sum_probs=67.0

Q ss_pred             CHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094          206 NALLLGNYARFLKEVRG--DFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS  282 (331)
Q Consensus       206 n~~~l~nLA~~L~~~~g--d~ekAee~~erALeldP-~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~  282 (331)
                      .+...++||+.|.....  +..+++.+++..++.+| ..-++++.+|..++. .|+|++|+.|.+++++.+|+|..+..-
T Consensus        39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~y~d~lL~~eP~N~QA~~L  117 (134)
T 3o48_A           39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGAL  117 (134)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence            67889999988766322  35689999999999999 457888889999998 999999999999999999999887654


Q ss_pred             HHHHH
Q 020094          283 YAKFL  287 (331)
Q Consensus       283 LA~~L  287 (331)
                      ...+-
T Consensus       118 k~~Ie  122 (134)
T 3o48_A          118 KSMVE  122 (134)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.98  E-value=0.0017  Score=54.49  Aligned_cols=71  Identities=7%  Similarity=-0.077  Sum_probs=60.3

Q ss_pred             cccchHHHHHhCCCc---HHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          175 FSGSNNNYSNNNHGS---SSTDAYYEKMIEAN-P-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~---ekA~e~yerAL~~n-P-~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~  246 (331)
                      -..|||-++....+.   .+++..++..+..+ | ..-+.++.+|..++. .|+|.+|.++++.+|+.+|+|..+..
T Consensus        37 ~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~A~~~~~~lL~~eP~n~QA~~  112 (126)
T 1nzn_A           37 TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKALKYVRGLLQTEPQNNQAKE  112 (126)
T ss_dssp             HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence            356888888887655   45999999999887 5 567788889988766 99999999999999999999999984

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.94  E-value=0.0048  Score=54.12  Aligned_cols=105  Identities=14%  Similarity=0.001  Sum_probs=78.1

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C--------
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNAL---------LLGNYARFLKEVRGDFAKAEELCGRAILAN---P--------  239 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~~---------~l~nLA~~L~~~~gd~ekAee~~erALeld---P--------  239 (331)
                      .+.+...+.|+.|+-....++....++++         ++..+|.+++. +++|.+|+.+|++||+..   +        
T Consensus        27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~-~~eyrrA~~~y~qALq~~k~l~k~~s~~~~  105 (167)
T 3ffl_A           27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFH-DKEYRNAVSKYTMALQQKKALSKTSKVRPS  105 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHCC---------
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHc-ccHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence            34455668999999999998877554444         77889999887 999999999999997542   1        


Q ss_pred             --------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          240 --------------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL  287 (331)
Q Consensus       240 --------------~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L  287 (331)
                                    .+.++.+..+.++.. .+++++|+..++.. -..-..+.+-..||..|
T Consensus       106 ~~~~ss~p~s~~~~~e~Elkykia~C~~~-l~~~~~Ai~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          106 TGNSASTPQSQCLPSEIEVKYKLAECYTV-LKQDKDAIAILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             -----------CCCCHHHHHHHHHHHHHH-TTCHHHHHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             ccccCCCcccccccchHHHHHHHHHHHHH-HCCHHHHHHHHhcC-CchhcCHHHHHHHHHHh
Confidence                          123677778887777 99999999987543 11225677777777665

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.78  E-value=0.031  Score=55.86  Aligned_cols=124  Identities=7%  Similarity=-0.023  Sum_probs=94.4

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH--------HcCCHHHHHHHHHHHHHhCCC-CHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANP-GNALLLGNYARFLKE--------VRGDFAKAEELCGRAILANPS-DGNILSL  247 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP-~n~~~l~nLA~~L~~--------~~gd~ekAee~~erALeldP~-d~~al~~  247 (331)
                      +.-+.|.+.|+.++|+++|+++.+..- -|...++.+-.++..        ..+++++|.++|++..+..-. |..+|..
T Consensus        31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~  110 (501)
T 4g26_A           31 QKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTN  110 (501)
T ss_dssp             HHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            344667788999999999999998742 244455444444322        012378999999998876432 6777777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          248 YADLIWQAHKDASRAESYFDQAVKSAP-DDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       248 yA~ll~~~~Gd~deA~~yfekAL~ldP-~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +...+.. .|++++|+.+|++..+..- -|..+|..+...|.+.|+.++|.+.+++
T Consensus       111 lI~~~~~-~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~  165 (501)
T 4g26_A          111 GARLAVA-KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAH  165 (501)
T ss_dssp             HHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHh-cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHH
Confidence            7777777 9999999999999888632 4888999999999999999999988873

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.0052  Score=65.18  Aligned_cols=115  Identities=11%  Similarity=0.133  Sum_probs=82.2

Q ss_pred             HHHhCCC-cHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCH---------
Q 020094          182 YSNNNHG-SSSTDAYYEKMIEANPGNALLLGN-YARFLKEVRGDFAKAEELCGRAILA--------NPSDG---------  242 (331)
Q Consensus       182 ~y~s~gd-~ekA~e~yerAL~~nP~n~~~l~n-LA~~L~~~~gd~ekAee~~erALel--------dP~d~---------  242 (331)
                      +....+. ++.|+.++++....+|.....+.. +..++.....+--+|++.+.++++.        .+.+.         
T Consensus       257 ~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~  336 (754)
T 4gns_B          257 FIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNCM  336 (754)
T ss_dssp             HHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHH
T ss_pred             HHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcc
Confidence            3333445 488999999999999977544322 1122111123456688888887742        33332         


Q ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094          243 -NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       243 -~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                       ..+..=+.++.. .++++-|+++.++|+...|.+...|+.|+.+|..+|+++.|-
T Consensus       337 ~~LL~~Qa~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~AL  391 (754)
T 4gns_B          337 SDLLNIQTNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKAL  391 (754)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHH
Confidence             233333556666 899999999999999999999999999999999999999985

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.56  E-value=0.013  Score=50.20  Aligned_cols=71  Identities=4%  Similarity=-0.115  Sum_probs=60.5

Q ss_pred             cccchHHHHHhCCC---cHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          175 FSGSNNNYSNNNHG---SSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       175 ~~~N~A~~y~s~gd---~ekA~e~yerAL~~nP~-n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~  246 (331)
                      -..|||-++....+   ..+++..++..+..+|. .-+.++.+|..++. .++|.+|.++++.+++.+|+|..+..
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            45688888888764   47899999999999995 56677888877665 99999999999999999999999983

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.51  E-value=0.011  Score=50.01  Aligned_cols=70  Identities=4%  Similarity=-0.103  Sum_probs=60.1

Q ss_pred             ccchHHHHHhCCC---cHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          176 SGSNNNYSNNNHG---SSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       176 ~~N~A~~y~s~gd---~ekA~e~yerAL~~nP~-n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~  246 (331)
                      ..|||-++....+   ..+++..++..++.+|. .-+.++.+|..++. .|+|.+|.++++.+++.+|+|..+..
T Consensus        43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~y~d~lL~~eP~N~QA~~  116 (134)
T 3o48_A           43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGA  116 (134)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCCHHHHH
Confidence            4688888877754   46899999999999995 47788888888666 99999999999999999999999984

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=96.30  E-value=0.05  Score=51.08  Aligned_cols=68  Identities=22%  Similarity=0.185  Sum_probs=59.4

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       183 y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      +.+.+..+.|++..+..++.+|.|+.....|-.+|+. .|++++|.+.++-+.+++|.....-.+|-.+
T Consensus         7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            4456889999999999999999999999999999987 9999999999999999999877665444433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=95.81  E-value=0.046  Score=55.23  Aligned_cols=67  Identities=19%  Similarity=0.099  Sum_probs=31.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                      ...+..|..||.+|+.++|+++..++.+|.+... .++.-+|+-||.|++......+.+..|+..++.
T Consensus       165 ~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~  231 (497)
T 1ya0_A          165 RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS  231 (497)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Confidence            3344444444444444444444444444444444 444444444444444443344444444444443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.70  E-value=0.26  Score=49.73  Aligned_cols=43  Identities=21%  Similarity=0.129  Sum_probs=31.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekA  269 (331)
                      .++++.|.++++     ..++...|..+|..+.. .++++.|+.+|.++
T Consensus       665 ~~~~~~A~~~~~-----~~~~~~~W~~la~~al~-~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          665 VGQLTLARDLLT-----DESAEMKWRALGDASLQ-RFNFKLAIEAFTNA  707 (814)
T ss_dssp             HTCHHHHHHHHT-----TCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHH-----hhCcHhHHHHHHHHHHH-cCCHHHHHHHHHHc
Confidence            466666666543     34677888888887777 88888888888875

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.68  E-value=0.097  Score=52.84  Aligned_cols=78  Identities=13%  Similarity=0.112  Sum_probs=66.2

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ..++++.......+..|..+|.+|+.++|++...++.+|.+... .++.-+|.-+|-|++....-.+.+..++..++-.
T Consensus       155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            45678888888889999999999999999999999999988655 8999999999999998776677777777655543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=94.65  E-value=0.22  Score=50.21  Aligned_cols=87  Identities=9%  Similarity=-0.080  Sum_probs=54.1

Q ss_pred             cchHHHHHhCCCcHHHHHHH----------------HHHHH--hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH----
Q 020094          177 GSNNNYSNNNHGSSSTDAYY----------------EKMIE--ANPGNALLLGNYARFLKEVRGDFAKAEELCGRA----  234 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~y----------------erAL~--~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erA----  234 (331)
                      ..++.++...+..+.|++..                +.|++  ...+++..|..+|.+... .++++.|+++|.++    
T Consensus       633 ~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~-~~~~~~A~~~y~~~~d~~  711 (814)
T 3mkq_A          633 TKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQ-RFNFKLAIEAFTNAHDLE  711 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHH-cCCHHHHHHHHHHccChh
Confidence            45677888888877775432                22222  355788999999988554 99999999999986    


Q ss_pred             ----HHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020094          235 ----ILANPSDGNILSLYADLIWQAHKDASRAESY  265 (331)
Q Consensus       235 ----LeldP~d~~al~~yA~ll~~~~Gd~deA~~y  265 (331)
                          |.....+...+..++..... .|++..|..+
T Consensus       712 ~l~~l~~~~~~~~~~~~~~~~a~~-~~~~~~A~~~  745 (814)
T 3mkq_A          712 SLFLLHSSFNNKEGLVTLAKDAET-TGKFNLAFNA  745 (814)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             hhHHHHHHcCCHHHHHHHHHHHHH-cCchHHHHHH
Confidence                22224455544444433333 4444444433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.27  E-value=0.33  Score=46.77  Aligned_cols=85  Identities=8%  Similarity=-0.010  Sum_probs=64.5

Q ss_pred             CCCcHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020094          186 NHGSSSTDAYYEKMIEANPGNA----------------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN  243 (331)
Q Consensus       186 ~gd~ekA~e~yerAL~~nP~n~----------------------~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~  243 (331)
                      .++.+.|.+.|++|+.+-...+                      .++..++.++. ..|++.+|+..+++++..+|-+-.
T Consensus       128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l-~~g~~~~a~~~l~~~~~~~P~~E~  206 (388)
T 2ff4_A          128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEALTFEHPYREP  206 (388)
T ss_dssp             TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH
Confidence            4677888888988888742210                      01122333333 379999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                      ++..+..+++. .|+..+|+..|+++-+.
T Consensus       207 ~~~~lm~al~~-~Gr~~~Al~~y~~~r~~  234 (388)
T 2ff4_A          207 LWTQLITAYYL-SDRQSDALGAYRRVKTT  234 (388)
T ss_dssp             HHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence            99888888888 99999999999987653

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.87  E-value=0.39  Score=46.84  Aligned_cols=98  Identities=10%  Similarity=-0.038  Sum_probs=70.5

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH---HHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG---NALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNI---LSL  247 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~---n~~~l~nLA~~L~~~~gd~ekAee~~erALeld--P~d~~a---l~~  247 (331)
                      ...+|++|...|++++|.++|.++...-..   -.+++.....+... .+|+..+..++.+|-.+-  ..++..   +..
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~-~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~  212 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFF-YNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT  212 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence            456899999999999999999998876432   24455555555443 899999999999996552  223322   223


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          248 YADLIWQAHKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       248 yA~ll~~~~Gd~deA~~yfekAL~ldP  274 (331)
                      +.++++...++|.+|-.+|-.++....
T Consensus       213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          213 YYGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhChHHHHHHHHHHHhccCC
Confidence            444444448999999999999887654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.73  E-value=0.29  Score=45.94  Aligned_cols=58  Identities=29%  Similarity=0.348  Sum_probs=54.2

Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094          221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYV  279 (331)
Q Consensus       221 ~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~v  279 (331)
                      .++++.|++.+...|+.+|.|+.....|..++.. .|++++|.+.++-+.+++|.....
T Consensus        10 ~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~   67 (273)
T 1zbp_A           10 EGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPG   67 (273)
T ss_dssp             TTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHH
Confidence            7899999999999999999999999999999998 999999999999999999966543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.40  E-value=1.4  Score=39.43  Aligned_cols=88  Identities=10%  Similarity=-0.047  Sum_probs=57.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--h---------------CCCCHH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL--A---------------NPSDGN  243 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALe--l---------------dP~d~~  243 (331)
                      -.++-.|+|.+++-++.     +-+..-..+.-+.++. ..+||.+|+..++..++  +               ||.|-.
T Consensus        41 I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~-klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkE  114 (242)
T 3kae_A           41 IVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYK-KKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEE  114 (242)
T ss_dssp             HHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHH
T ss_pred             hhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHH
Confidence            34555667776665542     2233333332333433 48999999999999982  2               355655


Q ss_pred             HHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          244 ILSL-YADLIWQAHKDASRAESYFDQAVKSAPD  275 (331)
Q Consensus       244 al~~-yA~ll~~~~Gd~deA~~yfekAL~ldP~  275 (331)
                      ...+ +|.++.+ .|+.+||+.+|...+..+|-
T Consensus       115 fFy~l~a~lltq-~g~r~EaI~y~~~Sf~~~~l  146 (242)
T 3kae_A          115 FFESLLGDLCTL-SGYREEGIGHYVRSFGKSFL  146 (242)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHH-hcCHHHhhhHhhhhcCCccc
Confidence            5544 4555555 99999999999999999883

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.46  E-value=1.3  Score=42.59  Aligned_cols=54  Identities=7%  Similarity=-0.063  Sum_probs=48.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++..+.. .|++++|+..++++++.+|.+..++..+..+|...|+..+|...++
T Consensus       176 ~~~~~~l~-~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~  229 (388)
T 2ff4_A          176 AKAEAEIA-CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR  229 (388)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34555555 8999999999999999999999999999999999999999987665

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.91  E-value=0.73  Score=45.11  Aligned_cols=95  Identities=14%  Similarity=0.064  Sum_probs=68.6

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHh--CCCCH-H---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH---HH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEA--NPGNA-L---LLGNYARFLKEVRGDFAKAEELCGRAILAN---PSDGN---IL  245 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~--nP~n~-~---~l~nLA~~L~~~~gd~ekAee~~erALeld---P~d~~---al  245 (331)
                      .++.+|...++|.+|...+.++++.  .-++. .   ++..-..++. ..+|+.++..+|.+|....   +-+|.   .+
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-ALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            7899999999999999999998884  22222 2   2222334544 4899999999999997654   13332   33


Q ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Q 020094          246 SLYADLIWQ-AHKDASRAESYFDQAVKSA  273 (331)
Q Consensus       246 ~~yA~ll~~-~~Gd~deA~~yfekAL~ld  273 (331)
                      ..++++++. ..++|.+|..+|-.++..-
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f  211 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEAFEGF  211 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHHHhcc
Confidence            356666766 5999999999999998653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=91.40  E-value=0.58  Score=49.61  Aligned_cols=59  Identities=19%  Similarity=0.141  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020094          210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP  274 (331)
Q Consensus       210 l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP  274 (331)
                      +..-+.+|.. .++|+-|+++.++|+...|.+...|+.++.+|.. +|||+.|+-.    |.-.|
T Consensus       340 L~~Qa~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLt----LNScP  398 (754)
T 4gns_B          340 LNIQTNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFA----INSMP  398 (754)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHH----HHHSC
T ss_pred             HHHHHHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHH----HhcCC
Confidence            3334566544 8999999999999999999999999999999998 9999999964    44556

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=90.17  E-value=5.8  Score=35.46  Aligned_cols=120  Identities=13%  Similarity=0.144  Sum_probs=81.2

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHH-----------------hCCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIE-----------------ANPGNALLLGN-YARFLKEVRGDFAKAEELCGRAILANPSD  241 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~-----------------~nP~n~~~l~n-LA~~L~~~~gd~ekAee~~erALeldP~d  241 (331)
                      +-||....+|.+|+.++++.|.                 .||.+.+++.+ +|.+ ....|+.++|+.+|.+....+|-.
T Consensus        69 ~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~l-ltq~g~r~EaI~y~~~Sf~~~~lf  147 (242)
T 3kae_A           69 SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDL-CTLSGYREEGIGHYVRSFGKSFLF  147 (242)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHH-HHHhcCHHHhhhHhhhhcCCcccc
Confidence            5688999999999999999993                 25677776655 4555 455999999999999999999987


Q ss_pred             HHHHHHHHHH----------HHHHcCCHHHHH---------------HHHHHHHHhCCCC-HHHHHHHHHHHHHcCCchH
Q 020094          242 GNILSLYADL----------IWQAHKDASRAE---------------SYFDQAVKSAPDD-CYVLASYAKFLWDAGDDEE  295 (331)
Q Consensus       242 ~~al~~yA~l----------l~~~~Gd~deA~---------------~yfekAL~ldP~d-~~vl~~LA~~L~~lG~~eE  295 (331)
                      +.+-+.+...          +.. .|+-.--+               .+.++....-|.- .++..+++.-|..+|-.++
T Consensus       148 ~~vEnliyeN~vp~~~d~~~i~~-~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d~  226 (242)
T 3kae_A          148 SPVENLLLENKVPQKRDKENVRQ-TGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMNDK  226 (242)
T ss_dssp             HHHHHHHHTTCCCCCC------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHHH
T ss_pred             chHHHHHhhcCCCcccchHHHHh-hhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccchh
Confidence            7776322111          000 01100011               3445555556633 3566788899999999888


Q ss_pred             HHHhhh
Q 020094          296 EEQDNE  301 (331)
Q Consensus       296 a~~~~~  301 (331)
                      -..+++
T Consensus       227 s~~lf~  232 (242)
T 3kae_A          227 SKACFE  232 (242)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776665

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.65  E-value=4.1  Score=39.92  Aligned_cols=95  Identities=8%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhC--CCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHH---
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEAN--PGN----ALLLGNYARFLKEVRGDFAKAEELCGRAI---LANPSDGNI---  244 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~n--P~n----~~~l~nLA~~L~~~~gd~ekAee~~erAL---eldP~d~~a---  244 (331)
                      .-+|..|...|++.+|...++....--  ..+    .+++..-..++. ..+|+.+|..++.++.   ...+.++..   
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l-~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI-LKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            568999999999999999999876431  112    234444445544 4899999999999974   234445432   


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020094          245 LSLYADLIWQAHKDASRAESYFDQAVKS  272 (331)
Q Consensus       245 l~~yA~ll~~~~Gd~deA~~yfekAL~l  272 (331)
                      ++.+.+.++...++|.+|-.+|..++..
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            2244455555589999999999999875

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=86.54  E-value=14  Score=32.16  Aligned_cols=46  Identities=9%  Similarity=0.033  Sum_probs=35.7

Q ss_pred             HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094          183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA  234 (331)
Q Consensus       183 y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erA  234 (331)
                      ....|+++.|.++.+.+     ++...|..+|.... ..|+++=|+++|.++
T Consensus        15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL-~~gn~~lAe~cy~~~   60 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEAL-AQGNASLAEMIYQTQ   60 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHH-HTTCHHHHHHHHHHT
T ss_pred             HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHH-HcCChHHHHHHHHHh
Confidence            34568888888887665     77888999998744 489998888888775

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=86.17  E-value=7.5  Score=42.93  Aligned_cols=92  Identities=9%  Similarity=-0.101  Sum_probs=66.4

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEA-----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYADL  251 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~-----nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeld--P~d~~al~~yA~l  251 (331)
                      +-+.|.+.|+.++|..+|.++.+.     .| |...++.+-..++. .|+.++|.++|++..+..  | |...|..+...
T Consensus       133 LIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck-~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~g  209 (1134)
T 3spa_A          133 FFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWAR-QGAFKELVYVLFMVKDAGLTP-DLLSYAAALQC  209 (1134)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHH
Confidence            445788889999999999776432     34 45556666666565 899999999999888764  4 56666666666


Q ss_pred             HHHHcCC-HHHHHHHHHHHHHhCC
Q 020094          252 IWQAHKD-ASRAESYFDQAVKSAP  274 (331)
Q Consensus       252 l~~~~Gd-~deA~~yfekAL~ldP  274 (331)
                      +.. .|+ .++|..+|++..+..=
T Consensus       210 lcK-~G~~~e~A~~Ll~EM~~kG~  232 (1134)
T 3spa_A          210 MGR-QDQDAGTIERCLEQMSQEGL  232 (1134)
T ss_dssp             HHH-HTCCHHHHHHHHHHHHHHTC
T ss_pred             HHh-CCCcHHHHHHHHHHHHHcCC
Confidence            666 676 5788899988888744

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=85.42  E-value=12  Score=41.26  Aligned_cols=91  Identities=8%  Similarity=-0.158  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHH
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAIL-----ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP-DDCYVL  280 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALe-----ldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP-~d~~vl  280 (331)
                      ...++.|-..++. .|+.++|.++|.+..+     ..| |...|..+...+.. .|++++|..+|++..+..- -|..+|
T Consensus       127 ~~TynaLIdglcK-~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck-~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          127 QQRLLAFFKCCLL-TDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWAR-QGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            3345556667666 8999999999976543     345 67778788888888 9999999999999988643 588899


Q ss_pred             HHHHHHHHHcCCc-hHHHHhh
Q 020094          281 ASYAKFLWDAGDD-EEEEQDN  300 (331)
Q Consensus       281 ~~LA~~L~~lG~~-eEa~~~~  300 (331)
                      ..+..++.+.|+. ++|.+.+
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll  224 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCL  224 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHH
Confidence            9999999999985 5554433

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=84.34  E-value=5.2  Score=43.71  Aligned_cols=115  Identities=12%  Similarity=-0.104  Sum_probs=78.5

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC----------------
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL---AN----------------  238 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALe---ld----------------  238 (331)
                      .+...+...+.++-+.+    .+..-|.++-..+.+|.++.. .|++++|.++|++|..   .+                
T Consensus       817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~-~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLK-SKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHh-cCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            34444555555554443    345567888878888888655 9999999999988731   11                


Q ss_pred             -C---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCCchHHHH
Q 020094          239 -P---SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP-DDCY----VLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       239 -P---~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP-~d~~----vl~~LA~~L~~lG~~eEa~~  298 (331)
                       +   .-+.+| .....+++..+.++.++++.+.|++..+ ++..    .|.++=....+++++++|-.
T Consensus       892 ~~~~~~l~~YY-~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~  959 (1139)
T 4fhn_B          892 YHHQNLLSCYY-LHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV  959 (1139)
T ss_dssp             TTSCCSSHHHH-HHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred             ccccccHHHHH-HHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence             0   012233 3334455558999999999999999876 4432    56777788889999999854

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=84.12  E-value=4.1  Score=35.64  Aligned_cols=55  Identities=15%  Similarity=0.088  Sum_probs=45.6

Q ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020094          205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA  269 (331)
Q Consensus       205 ~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekA  269 (331)
                      .|++..+.+|.    ..|+++.|.++++.+     ++...|..++..... +|+++-|+.+|.++
T Consensus         6 ~D~~~rF~LAL----~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~   60 (177)
T 3mkq_B            6 QDPHIRFDLAL----EYGNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQ   60 (177)
T ss_dssp             SCHHHHHHHHH----HTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred             CChHHHHHHHH----hcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHh
Confidence            46666676653    279999999998765     789999999999998 99999999999865

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=81.91  E-value=5.5  Score=43.52  Aligned_cols=115  Identities=9%  Similarity=-0.075  Sum_probs=75.1

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHh---C--------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEA---N--------------------PGNALLLGNYARFLKEVRGDFAKAEELC  231 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~---n--------------------P~n~~~l~nLA~~L~~~~gd~ekAee~~  231 (331)
                      ..+-+|++|...|++++|..+|+++..-   +                    ...+.++.....+ ++..+-++.++++.
T Consensus       844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~L-Fe~~~~~~~vi~fa  922 (1139)
T 4fhn_B          844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKK-LFEESAYIDALEFS  922 (1139)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHH-HHHTSCCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHH-HHHcCCHHHHHHHH
Confidence            3566789999999999999999887321   1                    1112333334444 55588999999999


Q ss_pred             HHHHHhCC-CCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          232 GRAILANP-SDGN----ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       232 erALeldP-~d~~----al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      +.||+..+ ++..    .|.++-..... .++|++|...+...=. .......+..+...+...+.
T Consensus       923 ~lAi~~~~~~~~~~~~~l~~~iFk~~L~-l~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~~  986 (1139)
T 4fhn_B          923 LLADASKETDDEDLSIAITHETLKTACA-AGKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQGK  986 (1139)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHHHHHHHH-HCCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHhccCCChhhHHHHHHHHHHHHHh-hCCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCCC
Confidence            99998875 4443    34444444555 8999999877754422 22345556666666665554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	5e-10
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-06
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	6e-07
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	0.001
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	6e-06
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-04
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	7e-04

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 57.0 bits (137), Expect = 5e-10
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 1/109 (0%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
               + I+A+P +A L  ++   L    GDF +A+E   ++I   P      S    L+ 
Sbjct: 17  ELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 75

Query: 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE 302
            A      A+      V    ++             + D E+  +   +
Sbjct: 76  AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 44.6 bits (105), Expect = 6e-06
 Identities = 19/91 (20%), Positives = 37/91 (40%), Gaps = 1/91 (1%)

Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280
            G   +A EL   AI A+P D ++ S + +L      D  RA+    Q++K  P+     
Sbjct: 9   EGQLQQALELLIEAIKASPKDASLRSSFIEL-LCIDGDFERADEQLMQSIKLFPEYLPGA 67

Query: 281 ASYAKFLWDAGDDEEEEQDNEESQHQTDHSH 311
           +     +  A   ++  Q    ++   ++  
Sbjct: 68  SQLRHLVKAAQARKDFAQGAATAKVLGENEE 98

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.1 bits (113), Expect = 6e-07
 Identities = 14/101 (13%), Positives = 33/101 (32%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
           + Y +++     +  L+                   +  +A     +  ++    A + +
Sbjct: 120 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179

Query: 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDE 294
              KD S A   F+  +K   D    + +Y  +L    +D 
Sbjct: 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 19/122 (15%), Positives = 36/122 (29%), Gaps = 14/122 (11%)

Query: 196 YEKMIEANPGNALLLGNYARFLKEV-------------RGDFAKAEELCGRAI-LANPSD 241
           YE+ +     +  +    A++L++              +    +A  +  RAI      +
Sbjct: 39  YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98

Query: 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE 301
             +   YAD      K       Y         D   V   Y KF   A   +      +
Sbjct: 99  MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158

Query: 302 ES 303
           ++
Sbjct: 159 KA 160

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 5e-06
 Identities = 22/132 (16%), Positives = 38/132 (28%), Gaps = 34/132 (25%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEV--------------------------------- 220
             Y + IE  P       N A  LKE                                  
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317

Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280
           +G+  +A  L  +A+   P      S  A  + Q       A  ++ +A++ +P      
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRISPTFADAY 376

Query: 281 ASYAKFLWDAGD 292
           ++    L +  D
Sbjct: 377 SNMGNTLKEMQD 388

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (105), Expect = 6e-06
 Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 1/104 (0%)

Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280
            GDF  AE  C +     P +  +L L +  I    +   R+  +   A+K  P      
Sbjct: 12  AGDFEAAERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70

Query: 281 ASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTSPPNFFHGASHH 324
           ++      + G  +E  +    +            N        
Sbjct: 71  SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 1e-04
 Identities = 13/131 (9%), Positives = 31/131 (23%), Gaps = 1/131 (0%)

Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
            +  ++    P N  +L   +    +      ++      AI  NP      S   ++  
Sbjct: 20  RHCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78

Query: 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEESQHQTDHSHTS 313
           +  +     E Y              +   A  +     +   +      Q+  D     
Sbjct: 79  ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138

Query: 314 PPNFFHGASHH 324
                   +  
Sbjct: 139 SDLGNLLKALG 149

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 3e-04
 Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 3/85 (3%)

Query: 195 YYEKMIEANPGNALLLGNYARFLKEV--RGDFAKAEELCGRAILANPSDGNILSLYA-DL 251
            ++    A   +      YA  L       D  K   L    +     +     ++   +
Sbjct: 21  KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80

Query: 252 IWQAHKDASRAESYFDQAVKSAPDD 276
                K+  +A  Y    +++ P +
Sbjct: 81  GNYRLKEYEKALKYVRGLLQTEPQN 105

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 7e-04
 Identities = 10/111 (9%), Positives = 25/111 (22%), Gaps = 1/111 (0%)

Query: 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252
              Y+KM+  +   AL              +     +   +   ANP+   + +  +  +
Sbjct: 37  QDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN-RANPNRSEVQANLSLFL 95

Query: 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEES 303
             A    ++                   +                +    S
Sbjct: 96  EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSS 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.67
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.65
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.65
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.63
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.61
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.59
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.57
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.55
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.55
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.53
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.5
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.49
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.46
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.45
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.45
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.45
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.39
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.36
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.35
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.18
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.17
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.15
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.12
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.11
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.08
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.06
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.06
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.05
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.05
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.04
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.02
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.01
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.99
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.99
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.98
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.94
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.91
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.85
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.84
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.72
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.69
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.53
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.51
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.37
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.24
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	98.14
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.89
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.84
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.71
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.64

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.1e-16  Score=125.52  Aligned_cols=109  Identities=17%  Similarity=0.167  Sum_probs=102.8

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      +-|..++..|++++|+.+|+++|..+|+++.++.++|.++.. .+++++|+..|.++++++|+++.+|.+++.++.. +|
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~-~~   85 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF-LN   85 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cccccccchhhhhHHHhccchhhHHHHHHHHHHH-cc
Confidence            457889999999999999999999999999999999999766 9999999999999999999999999999998888 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          258 DASRAESYFDQAVKSAPDDCYVLASYAKFLW  288 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~  288 (331)
                      ++++|+.+|+++++++|++..++..++.+..
T Consensus        86 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          86 RFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999887653

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=7.6e-16  Score=128.21  Aligned_cols=119  Identities=18%  Similarity=0.065  Sum_probs=106.9

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      ..|..|+..++|++|+.+|+++++++|+++.++.++|.++.. .|++++|++.|++||+++|++..+|..+|.++.. +|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh-ccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cC
Confidence            356789999999999999999999999999999999999766 9999999999999999999999999999999998 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC--CchHHHH
Q 020094          258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG--DDEEEEQ  298 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG--~~eEa~~  298 (331)
                      ++++|+.+|++++.++|++..++..++.+....+  .++++..
T Consensus        93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~  135 (159)
T d1a17a_          93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA  135 (159)
T ss_dssp             CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988887755433  3544543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=1.4e-15  Score=132.09  Aligned_cols=122  Identities=9%  Similarity=0.045  Sum_probs=112.7

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...+.|.+|...|++++|+.+|+++|.++|+++.++.++|.++.. .|++++|+++|++|++++|+++.++..+|.+++.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence            567889999999999999999999999999999999999999765 9999999999999999999999999999999988


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHH
Q 020094          255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQ  298 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~  298 (331)
                       .|++++|+.+|+++++++|.+......++.++...+..+.+..
T Consensus       118 -~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~  160 (259)
T d1xnfa_         118 -GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEV  160 (259)
T ss_dssp             -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             -HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHH
Confidence             9999999999999999999999998888888888876554443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.9e-16  Score=137.16  Aligned_cols=127  Identities=20%  Similarity=0.196  Sum_probs=120.4

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .....++|.+|...+++++|+.+|+++++++|+++.++.++|.++.. .+++.+|+++|++++...|.+..++..++.++
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  315 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKE-KGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence            34567889999999999999999999999999999999999999776 99999999999999999999999999999988


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .. .|++++|+.+|+++++++|++..++.++|.+|...|++++|...++
T Consensus       316 ~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  363 (388)
T d1w3ba_         316 RE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK  363 (388)
T ss_dssp             HT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88 9999999999999999999999999999999999999999999888

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=2.2e-16  Score=132.75  Aligned_cols=101  Identities=16%  Similarity=0.084  Sum_probs=93.8

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK  257 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~G  257 (331)
                      +.+..|+..|+|++|+.+|+++|.++|+++.++.++|.++.. .|++++|+.+|.+||+++|+++.+|.++|.+++. +|
T Consensus         9 ~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~-l~   86 (201)
T d2c2la1           9 EQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQCQLE-ME   86 (201)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-CC
Confidence            567899999999999999999999999999999999999765 9999999999999999999999999999999998 99


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHH
Q 020094          258 DASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       258 d~deA~~yfekAL~ldP~d~~vl  280 (331)
                      ++++|+.+|++|++++|++...+
T Consensus        87 ~~~~A~~~~~~al~l~p~~~~~~  109 (201)
T d2c2la1          87 SYDEAIANLQRAYSLAKEQRLNF  109 (201)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             CHHHHHHHHHHHHHhCcccHHHH
Confidence            99999999999999988544433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.6e-15  Score=137.93  Aligned_cols=124  Identities=12%  Similarity=0.046  Sum_probs=116.3

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      .+++.++.+.+.+++|+.+|++||++||++..+|.+.|.++....+++++|+.+++++++++|++..+|..++.++.. .
T Consensus        47 ~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l  125 (315)
T d2h6fa1          47 DYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-L  125 (315)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-h
Confidence            367788889999999999999999999999999999999977644579999999999999999999999999998888 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |++++|+.+|+++++++|++..+|.++|.++...+++++|...++
T Consensus       126 ~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~  170 (315)
T d2h6fa1         126 RDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD  170 (315)
T ss_dssp             TCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             ccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999999999999999999999999999999999999999988776

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=3.7e-15  Score=132.39  Aligned_cols=118  Identities=18%  Similarity=0.195  Sum_probs=112.1

Q ss_pred             cccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       173 ~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .-...++|.+|...+++++|+.+|++++...|.++.++..++.++.. .|++++|+++|+++++++|+++.++.++|.++
T Consensus       271 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~  349 (388)
T d1w3ba_         271 PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVL  349 (388)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            44567899999999999999999999999999999999999999765 99999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      +. .|++++|+.+|++|++++|++..++.++|.+|.++|+
T Consensus       350 ~~-~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         350 QQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HT-TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            98 9999999999999999999999999999999999886

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.5e-15  Score=123.98  Aligned_cols=112  Identities=12%  Similarity=0.004  Sum_probs=98.8

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAILANPSD--GNILSLYADLIW  253 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~--~~gd~ekAee~~erALeldP~d--~~al~~yA~ll~  253 (331)
                      |++..+...+++++|++.|+++|.++|+++.++++||.++..  ..+++++|+++|++++..+|++  ..+|+++|.+++
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            577888899999999999999999999999999999999754  1346778999999999999876  458889999999


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      . .|++++|+.+|+++++++|++..++..+..+..+.
T Consensus        84 ~-~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~  119 (122)
T d1nzna_          84 R-LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM  119 (122)
T ss_dssp             H-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             H-HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence            8 99999999999999999999999988887776554

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4e-14  Score=122.47  Aligned_cols=120  Identities=12%  Similarity=0.046  Sum_probs=109.2

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      .|-|..+...+++++|+++|.+   +.|.++.+++++|.++.. .|++++|+++|.+||++||+++.+|.++|.+++. +
T Consensus         9 ~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~-~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~   83 (192)
T d1hh8a_           9 WNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTI-LKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-T   83 (192)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHH-cCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-h
Confidence            4678899999999999999986   467789999999999766 9999999999999999999999999999999998 9


Q ss_pred             CCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          257 KDASRAESYFDQAVKSAPDD----------------CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d----------------~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |++++|+..|++|+...+.+                +.+++++|.++..++++++|...++
T Consensus        84 g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~  144 (192)
T d1hh8a_          84 EKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA  144 (192)
T ss_dssp             TCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999976643                5789999999999999999987665

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=3.4e-14  Score=120.47  Aligned_cols=118  Identities=14%  Similarity=0.059  Sum_probs=105.5

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNA---------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG  242 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~---------------~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~  242 (331)
                      +.|..|+..++|++|+.+|+++|...|...               .++.++|.++.. ++++++|+.++++||+++|+++
T Consensus        18 ~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k-~~~~~~A~~~~~~al~~~p~~~   96 (170)
T d1p5qa1          18 ERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLK-LQAFSAAIESCNKALELDSNNE   96 (170)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHh-hhhcccccchhhhhhhccccch
Confidence            457788999999999999999999988642               456678888655 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      .+++.+|.+++. +|++++|+.+|+++++++|+|..+...++.+.....+..+.+
T Consensus        97 ~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1          97 KGLSRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHH-hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999998 999999999999999999999999999999988877665554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=4e-14  Score=126.61  Aligned_cols=118  Identities=12%  Similarity=0.004  Sum_probs=67.7

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      .++|.++...+++++|+.+|++++..+|+++.++.++|.++.. .|++++|+++|+++++++|+++.+|..+|.+++. .
T Consensus       176 ~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~  253 (323)
T d1fcha_         176 CGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN-L  253 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-H
T ss_pred             hhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccc-cccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-C
Confidence            4455566666666666666666666666666666666655443 6666666666666666666666666666555555 6


Q ss_pred             CCHHHHHHHHHHHHHhCCCCHH-----------HHHHHHHHHHHcCCchHH
Q 020094          257 KDASRAESYFDQAVKSAPDDCY-----------VLASYAKFLWDAGDDEEE  296 (331)
Q Consensus       257 Gd~deA~~yfekAL~ldP~d~~-----------vl~~LA~~L~~lG~~eEa  296 (331)
                      |++++|+.+|++|++++|++..           +|.+++.++...++.+..
T Consensus       254 g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         254 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             CCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            6666666666666666554443           234445555555554433

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.55  E-value=4.2e-15  Score=123.79  Aligned_cols=115  Identities=18%  Similarity=0.123  Sum_probs=99.2

Q ss_pred             HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020094          181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---------VRGDFAKAEELCGRAILANPSDGNILSLYADL  251 (331)
Q Consensus       181 ~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~---------~~gd~ekAee~~erALeldP~d~~al~~yA~l  251 (331)
                      ..|.+.+.|++|+.+|+++++++|+++.+++++|.++..         ..+++++|+++|++||+++|+++.+|+++|.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            345667789999999999999999999999999988753         23557899999999999999999999999998


Q ss_pred             HHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHH
Q 020094          252 IWQAHK-----------DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEE  296 (331)
Q Consensus       252 l~~~~G-----------d~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa  296 (331)
                      +.. +|           ++++|+.+|++|++++|++..++..++.+....+...|.
T Consensus        85 y~~-~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1          85 YTS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             HHH-cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            876 43           479999999999999999999999999987665555444

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.53  E-value=3.9e-14  Score=118.99  Aligned_cols=119  Identities=18%  Similarity=0.127  Sum_probs=106.8

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEA----------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS  240 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~----------------nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~  240 (331)
                      .+.+..++..++|++|+.+|+++|..                +|.+..++.++|.++.. .+++++|+.+|.+||+++|+
T Consensus        31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~Ai~~~~~al~~~p~  109 (169)
T d1ihga1          31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEALEIDPS  109 (169)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHh-hcccchhhhhhhhhhhhhhh
Confidence            35677889999999999999999864                56677788999988665 99999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094          241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       241 d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      ++.+|+.+|.++.. .|++++|+.+|++|++++|++..+...+..+..++....+++
T Consensus       110 ~~~a~~~~g~~~~~-l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         110 NTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHhHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999998 999999999999999999999999999999988777665554

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=7.9e-14  Score=124.65  Aligned_cols=118  Identities=10%  Similarity=0.085  Sum_probs=108.8

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020094          182 YSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (331)
Q Consensus       182 ~y~s~gd~ekA~e~yerAL~~nP~--n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~  259 (331)
                      .+...+.+.+|+.+|++++.++|+  ++.++..+|.++.. .|++++|+.+|++++..+|+++.+|..+|.++.. .|++
T Consensus       145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~  222 (323)
T d1fcha_         145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL-SGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQS  222 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred             HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH-HHHHhhhhcccccccccccccccchhhhhhcccc-cccc
Confidence            444556789999999999999987  47788899988765 9999999999999999999999999999999888 9999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       260 deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++|+.+|+++++++|++..+++++|.+|.+.|++++|...++
T Consensus       223 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  264 (323)
T d1fcha_         223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL  264 (323)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999988877

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.50  E-value=1e-13  Score=109.86  Aligned_cols=92  Identities=11%  Similarity=-0.027  Sum_probs=72.5

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH  256 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~  256 (331)
                      .+.|..+...|++++|+.+|++++.++|+++.++..+|.++.. .+++++|+.+|++|++++|+++.+|..+|.++.. +
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~-~   97 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN-E   97 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhcccccccccccccccchHHHHHHHHH-C
Confidence            4677777888888888888888888888888888888877554 7888888888888888888888888777777777 7


Q ss_pred             CCHHHHHHHHHHHH
Q 020094          257 KDASRAESYFDQAV  270 (331)
Q Consensus       257 Gd~deA~~yfekAL  270 (331)
                      |++++|+++|+|+|
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            88888888887765

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.49  E-value=7.5e-14  Score=120.93  Aligned_cols=114  Identities=18%  Similarity=0.142  Sum_probs=103.8

Q ss_pred             CCcHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020094          187 HGSSSTDAYYEKMIEANP----GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA  262 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP----~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA  262 (331)
                      .+++.|+..+++++...+    ..+.+++++|.++.. .|++++|+++|++||+++|+++.+|..+|.++.. .|++++|
T Consensus        13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~-~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~~~A   90 (259)
T d1xnfa_          13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDS-LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAA   90 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHHHHh
Confidence            456888899999987644    456689999999766 9999999999999999999999999999998888 9999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       263 ~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      +.+|+++++++|++..++.++|.++..+|++++|.+.++.
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  130 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  130 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999988873

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.46  E-value=8e-13  Score=109.98  Aligned_cols=110  Identities=12%  Similarity=0.044  Sum_probs=98.2

Q ss_pred             hHHHHHhCCCcHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          179 NNNYSNNNHGSSSTDAYYEKMIEANPGNA----------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG  242 (331)
Q Consensus       179 ~A~~y~s~gd~ekA~e~yerAL~~nP~n~----------------~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~  242 (331)
                      -|..++..++|.+|+..|+++|..-+...                .++.|+|.++.. .+++++|+++|.+||+++|++.
T Consensus        23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-l~~~~~Al~~~~~al~~~p~~~  101 (153)
T d2fbna1          23 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNK-NKDYPKAIDHASKVLKIDKNNV  101 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHH-hcccchhhhhhhccccccchhh
Confidence            45678889999999999999999766432                356788988665 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      .+|+.+|.+++. +|++++|+.+|+++++++|+|..+...+..+..++
T Consensus       102 ka~~~~g~~~~~-lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1         102 KALYKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999998 99999999999999999999999999998887655

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.8e-13  Score=124.99  Aligned_cols=117  Identities=12%  Similarity=0.016  Sum_probs=108.1

Q ss_pred             cccchHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW  253 (331)
Q Consensus       175 ~~~N~A~~y~s~g-d~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~  253 (331)
                      ...|.+.++...+ ++++|+.+|+++++++|++..++.++|.++.. .|++++|+++|.+||+++|++..+|.+++.++.
T Consensus        79 a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~-l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~  157 (315)
T d2h6fa1          79 VWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQ  157 (315)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh-hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHH
Confidence            3456777888876 58999999999999999999999999999765 999999999999999999999999999999998


Q ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020094          254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDD  293 (331)
Q Consensus       254 ~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~  293 (331)
                      . .+++++|+.+|+++++++|.+..+|.+++.++...+..
T Consensus       158 ~-~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~  196 (315)
T d2h6fa1         158 E-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY  196 (315)
T ss_dssp             H-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred             H-HHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence            8 99999999999999999999999999999999998874

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.45  E-value=6.2e-13  Score=111.94  Aligned_cols=118  Identities=13%  Similarity=0.090  Sum_probs=103.4

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG  242 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n---------------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~  242 (331)
                      ..|..++..++|.+|+.+|+++|...+..               ..++.|+|.++.. .+++.+|+.+|.++++++|++.
T Consensus        20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~-l~~~~~Ai~~~~~al~l~p~~~   98 (168)
T d1kt1a1          20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLK-LREYTKAVECCDKALGLDSANE   98 (168)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHH-hhhcccchhhhhhhhhcccchH
Confidence            35678899999999999999999865432               2346778888665 9999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      .+++.++.++.. +|++++|+.+|+++++++|++..++..++.+....++..+..
T Consensus        99 ~a~~~~~~~~~~-l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~  152 (168)
T d1kt1a1          99 KGLYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD  152 (168)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence            999999999998 999999999999999999999999999999988887665543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.8e-13  Score=107.28  Aligned_cols=105  Identities=19%  Similarity=0.292  Sum_probs=90.8

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-------ILSLYAD  250 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~-------al~~yA~  250 (331)
                      |.+..|+..++|++|+.+|+++|.++|+++.++.++|.++.. .|++++|+++|++||+++|++..       ++..++.
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            678899999999999999999999999999999999999776 99999999999999999998765       4444555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK  285 (331)
Q Consensus       251 ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~  285 (331)
                      ++.. .+++++|+.+|++++..++ +..++..+..
T Consensus        88 ~~~~-~~~~~~A~~~~~kal~~~~-~~~~~~~l~~  120 (128)
T d1elra_          88 SYFK-EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQ  120 (128)
T ss_dssp             HHHH-TTCHHHHHHHHHHHHHHCC-CHHHHHHHHH
T ss_pred             HHHH-hCCHHHHHHHHHHHHhcCC-CHHHHHHHHH
Confidence            6666 8999999999999999987 4566555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=4.3e-13  Score=112.27  Aligned_cols=95  Identities=15%  Similarity=0.052  Sum_probs=88.4

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020094          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK  285 (331)
Q Consensus       206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~  285 (331)
                      ++..+...|..++. .|+|++|+.+|.+||+++|+++.+|.++|.+++. .|++++|+.+|++|++++|++..+|+++|.
T Consensus         3 ~a~~l~~~Gn~~~~-~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           3 SAQELKEQGNRLFV-GRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            34556778888776 9999999999999999999999999999999888 999999999999999999999999999999


Q ss_pred             HHHHcCCchHHHHhhhh
Q 020094          286 FLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       286 ~L~~lG~~eEa~~~~~~  302 (331)
                      +|..+|++++|.+.++.
T Consensus        81 ~~~~l~~~~~A~~~~~~   97 (201)
T d2c2la1          81 CQLEMESYDEAIANLQR   97 (201)
T ss_dssp             HHHHTTCHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHH
Confidence            99999999999988873

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.7e-12  Score=103.26  Aligned_cols=90  Identities=19%  Similarity=0.038  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD  289 (331)
Q Consensus       210 l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~  289 (331)
                      +...|..++. .|+|++|+.+|.++|+++|+++.+|.++|.++.. .|++++|+.+|+++++++|++..+|+++|.++..
T Consensus         6 l~~~g~~~~~-~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_           6 LKEKGNKALS-VGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence            3456777665 9999999999999999999999999999999998 9999999999999999999999999999999999


Q ss_pred             cCCchHHHHhhh
Q 020094          290 AGDDEEEEQDNE  301 (331)
Q Consensus       290 lG~~eEa~~~~~  301 (331)
                      +|++++|...++
T Consensus        84 ~~~~~~A~~~~~   95 (117)
T d1elwa_          84 LNRFEEAKRTYE   95 (117)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             ccCHHHHHHHHH
Confidence            999999999988

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.39  E-value=1.6e-12  Score=102.89  Aligned_cols=90  Identities=11%  Similarity=-0.037  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD  289 (331)
Q Consensus       210 l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~  289 (331)
                      ++.+|..+.. .|++.+|+.+|+++|+++|+++.+|..+|.++.. .+++++|+.+|+++++++|++..+|..+|.+|..
T Consensus        19 ~~~~g~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~   96 (112)
T d1hxia_          19 PMEEGLSMLK-LANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence            4567777665 9999999999999999999999999999999888 9999999999999999999999999999999999


Q ss_pred             cCCchHHHHhhh
Q 020094          290 AGDDEEEEQDNE  301 (331)
Q Consensus       290 lG~~eEa~~~~~  301 (331)
                      .|+.++|.+.++
T Consensus        97 ~g~~~~A~~~l~  108 (112)
T d1hxia_          97 EHNANAALASLR  108 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHH
Confidence            999999988776

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.6e-12  Score=104.30  Aligned_cols=91  Identities=15%  Similarity=-0.011  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       211 ~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      ...|..++. .|+|++|+.+|++|++++|+++.+|.++|.+++. .|++++|+.+|+++++++|++..+|..+|.++..+
T Consensus        14 ~~~gn~~~~-~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          14 KTQANDYFK-AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHH-cCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh-ccccchHHHHHHHHHHHcccchHHHHHHHHHHHHc
Confidence            334666555 9999999999999999999999999999999998 99999999999999999999999999999999999


Q ss_pred             CCchHHHHhhhhh
Q 020094          291 GDDEEEEQDNEES  303 (331)
Q Consensus       291 G~~eEa~~~~~~~  303 (331)
                      |++++|...++..
T Consensus        92 g~~~eA~~~~~~a  104 (159)
T d1a17a_          92 GKFRAALRDYETV  104 (159)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999888733

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=6.7e-12  Score=108.16  Aligned_cols=107  Identities=9%  Similarity=-0.005  Sum_probs=95.2

Q ss_pred             CcccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Q 020094          172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD----------  241 (331)
Q Consensus       172 ~~~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d----------  241 (331)
                      ++....|+|.+|...|++++|+.+|+++|+++|+++.+++++|.++.. +|++++|++.|++|++..+.+          
T Consensus        35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~-~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~  113 (192)
T d1hh8a_          35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ-TEKYDLAIKDLKEALIQLRGNQLIDYKILGL  113 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred             CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-hccHHHHHHHHHHHHHhCccCchHHHHHhhh
Confidence            344567999999999999999999999999999999999999999776 999999999999999987654          


Q ss_pred             ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020094          242 ------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL  280 (331)
Q Consensus       242 ------~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl  280 (331)
                            ..++++++.++.. .+++++|+..|++|+.+.|+.....
T Consensus       114 ~~~~~~~e~~~n~a~~~~~-~~~~~~A~~~l~~A~~~~~~~~~~~  157 (192)
T d1hh8a_         114 QFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRHSK  157 (192)
T ss_dssp             CCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGGGH
T ss_pred             hcccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcchHH
Confidence                  4778889998888 9999999999999999999754333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.3e-11  Score=94.38  Aligned_cols=91  Identities=10%  Similarity=0.120  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHH
Q 020094          209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC-------YVLA  281 (331)
Q Consensus       209 ~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~-------~vl~  281 (331)
                      .+-++|..++. .++|++|+++|.+||+++|+++.++.++|.++.. +|++++|+.+|++|++++|++.       .++.
T Consensus         6 ~~k~~G~~~~~-~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           6 KEKELGNDAYK-KKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            34578888776 9999999999999999999999999999999999 9999999999999999999664       3667


Q ss_pred             HHHHHHHHcCCchHHHHhhh
Q 020094          282 SYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       282 ~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+|.++...+++++|...++
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~  103 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYN  103 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHH
Confidence            78888888889999988776

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.3e-11  Score=90.23  Aligned_cols=81  Identities=12%  Similarity=0.088  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020094          207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYV  279 (331)
Q Consensus       207 ~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d-------~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~v  279 (331)
                      ++..+.+|.+++. .|+|.+|+.+|++|+++.|.+       +.++.++|.+++. .|++++|+.+|+++++++|++..+
T Consensus         5 addc~~lG~~~~~-~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a   82 (95)
T d1tjca_           5 AEDSFELGKVAYT-EADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA   82 (95)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHH
Confidence            4556778888776 889999999999998886653       6778888888888 999999999999999999999998


Q ss_pred             HHHHHHHHHH
Q 020094          280 LASYAKFLWD  289 (331)
Q Consensus       280 l~~LA~~L~~  289 (331)
                      +.+++.+...
T Consensus        83 ~~Nl~~~~~~   92 (95)
T d1tjca_          83 NGNLKYFEYI   92 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888776554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.15  E-value=2.9e-11  Score=109.84  Aligned_cols=118  Identities=12%  Similarity=0.079  Sum_probs=102.6

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020094          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA  259 (331)
Q Consensus       182 ~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~g--d~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~  259 (331)
                      .+...+.+++|+.+|+++++.+|+++.++..+|.++.. .+  ++++|+.++.++++++|++..++....+.++...+++
T Consensus        82 ~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  160 (334)
T d1dcea1          82 PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAP  160 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCH
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhcccc
Confidence            34445668999999999999999999999999988655 44  5899999999999999999999866665565548999


Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhh
Q 020094          260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDN  300 (331)
Q Consensus       260 deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~  300 (331)
                      ++|+.+++++++++|.+..+|.+++.++.+.|++++|.+.+
T Consensus       161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999999999999999999999999999988775444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=2.1e-10  Score=103.82  Aligned_cols=127  Identities=14%  Similarity=0.162  Sum_probs=110.9

Q ss_pred             ccccchHHHHHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       174 ~~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~-~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      .+...|+.++...+++++|..+|++++...|.+. .++..|+.++.. .+++++|.++|.+|++..|.+..++..++.+.
T Consensus       100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~-~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e  178 (308)
T d2onda1         100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARR-AEGIKSGRMIFKKAREDARTRHHVYVTAALME  178 (308)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHH-HHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH-cCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            4566789999999999999999999999999775 467888888654 88999999999999999999999998888777


Q ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       253 ~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +...++.+.|..+|+++++.+|++..+|..++.++...|+.++|...++
T Consensus       179 ~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe  227 (308)
T d2onda1         179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE  227 (308)
T ss_dssp             HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            6646889999999999999999999999999999999999999888887

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.5e-10  Score=95.21  Aligned_cols=85  Identities=12%  Similarity=-0.028  Sum_probs=76.3

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..|+|.+|...+++++|+.+|+++|.++|+++.+++.+|.+++. .|++++|+.+|++|++++|+|+.+...++.+... 
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~-  142 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR-  142 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHH-hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence            46899999999999999999999999999999999999999776 9999999999999999999999999888887665 


Q ss_pred             cCCHHHH
Q 020094          256 HKDASRA  262 (331)
Q Consensus       256 ~Gd~deA  262 (331)
                      ..+..+.
T Consensus       143 ~~~~~~~  149 (170)
T d1p5qa1         143 IRRQLAR  149 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.08  E-value=3.9e-10  Score=94.41  Aligned_cols=95  Identities=11%  Similarity=-0.025  Sum_probs=81.8

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..|+|.+|...+++++|+.+|+++|.++|++..+++++|.++.. .|++++|+.+|.++++++|+|+.++..++.+... 
T Consensus        67 ~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~-l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~-  144 (168)
T d1kt1a1          67 FLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK-  144 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH-
T ss_pred             HHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence            56899999999999999999999999999999999999999776 9999999999999999999999999888877665 


Q ss_pred             cCCH-HHHHHHHHHHHHh
Q 020094          256 HKDA-SRAESYFDQAVKS  272 (331)
Q Consensus       256 ~Gd~-deA~~yfekAL~l  272 (331)
                      .+.+ +...+.|.+.++.
T Consensus       145 ~~~~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1         145 AKEHNERDRRTYANMFKK  162 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhh
Confidence            4433 3455665555544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.06  E-value=3.6e-10  Score=94.23  Aligned_cols=86  Identities=13%  Similarity=-0.002  Sum_probs=76.2

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ...|+|.+|...+++++|+.+|+++|+++|+++.+++++|.++.. .+++++|++.|++|++++|+|..++..+..+...
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~-l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~  157 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  157 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            356899999999999999999999999999999999999999776 9999999999999999999999999888776655


Q ss_pred             HcCCHHHH
Q 020094          255 AHKDASRA  262 (331)
Q Consensus       255 ~~Gd~deA  262 (331)
                       .....++
T Consensus       158 -l~~~~~~  164 (169)
T d1ihga1         158 -IKAQKDK  164 (169)
T ss_dssp             -HHHHHHH
T ss_pred             -HHHHHHH
Confidence             4444443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=5.2e-10  Score=101.16  Aligned_cols=126  Identities=12%  Similarity=0.063  Sum_probs=114.1

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      .-..|+.+....++++.|..+|++++...|.+...+..+|.+.+...++.+.|..+|+++++.+|+++.+|..|+.++..
T Consensus       136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~  215 (308)
T d2onda1         136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH  215 (308)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999998866667899999999999999999999999999999998


Q ss_pred             HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          255 AHKDASRAESYFDQAVKSAPDD----CYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       255 ~~Gd~deA~~yfekAL~ldP~d----~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                       .|++++|..+|++|+...|.+    ..+|..+..+....|+.+.+.+..+
T Consensus       216 -~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~  265 (308)
T d2onda1         216 -LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK  265 (308)
T ss_dssp             -TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             -cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence             999999999999999987744    4589999999999999888876654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.05  E-value=3.4e-10  Score=101.75  Aligned_cols=126  Identities=10%  Similarity=-0.005  Sum_probs=104.8

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEAN------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GN  243 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~n------P~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~~  243 (331)
                      ..+.|.+|...+++++|+.+|++++.+.      ++-...+.++|.++.. .+++++|+++|++++++.+.+      ..
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  118 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKS-GGNSVNAVDSLENAIQIFTHRGQFRRGAN  118 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH-hCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence            5567889999999999999999999973      2234567888888655 999999999999999987765      56


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD------DCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       244 al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~------d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      ++..++.++....+++++|+.+|++|+++.+.      ...++.++|.++...|++++|...++.
T Consensus       119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~  183 (290)
T d1qqea_         119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK  183 (290)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHH
Confidence            77677777766469999999999999988552      245689999999999999999988873

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.05  E-value=2.3e-10  Score=94.54  Aligned_cols=95  Identities=12%  Similarity=-0.026  Sum_probs=81.0

Q ss_pred             HHHHHhCCCcHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 020094          180 NNYSNNNHGSSSTDAYYEKMIEANPGNA------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------  240 (331)
Q Consensus       180 A~~y~s~gd~ekA~e~yerAL~~nP~n~------------~~l~nLA~~L~~~~gd~ekAee~~erALeldP~-------  240 (331)
                      +..++..|+|++|+..|+++|+++|+.+            .++.++|.++.. .|++++|++.|.+++.+.|.       
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~~~~~~~~~~   94 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFNRRGELNQD   94 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhccccccccccc
Confidence            6677888999999999999999988753            568899999766 99999999999999987542       


Q ss_pred             ----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020094          241 ----DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD  276 (331)
Q Consensus       241 ----d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d  276 (331)
                          ...+++++|.++.. +|++++|+.+|++|+++.|+.
T Consensus        95 ~~~~~~~a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          95 EGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHC
T ss_pred             ccchhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHHh
Confidence                24467788988888 999999999999999996633

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=9.7e-10  Score=98.68  Aligned_cols=126  Identities=14%  Similarity=0.002  Sum_probs=106.4

Q ss_pred             cccchHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Q 020094          175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DG  242 (331)
Q Consensus       175 ~~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~------d~  242 (331)
                      ...|+|.+|...+++++|+.+|++++.+.+.+      ..++.++|.++....+++++|+++|++|+++.+.      ..
T Consensus        79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~  158 (290)
T d1qqea_          79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (290)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence            56789999999999999999999999986655      5567788877655469999999999999987543      24


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCchHHHHhhh
Q 020094          243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC-------YVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       243 ~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~-------~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .++.+++.++.. +|+|++|+.+|++++...+.+.       .++..++.++...++.+.+...++
T Consensus       159 ~~~~~la~~~~~-~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~  223 (290)
T d1qqea_         159 KCFIKCADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ  223 (290)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHH-cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            567788888888 9999999999999999988654       456788899999999999988776

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=6.3e-10  Score=85.43  Aligned_cols=76  Identities=12%  Similarity=0.096  Sum_probs=67.9

Q ss_pred             cchHHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020094          177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA  249 (331)
Q Consensus       177 ~N~A~~y~s~gd~ekA~e~yerAL~~nP~n-------~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA  249 (331)
                      .+++..++..++|.+|+.+|++|+++.|.+       +.++.++|.+++. .|++++|+.+|++||+++|+++.++.+++
T Consensus         9 ~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           9 FELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            478999999999999999999999986654       6789999999776 99999999999999999999999998886


Q ss_pred             HHHH
Q 020094          250 DLIW  253 (331)
Q Consensus       250 ~ll~  253 (331)
                      .+..
T Consensus        88 ~~~~   91 (95)
T d1tjca_          88 YFEY   91 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            6543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.01  E-value=7.4e-09  Score=93.55  Aligned_cols=116  Identities=12%  Similarity=0.002  Sum_probs=98.3

Q ss_pred             hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV---------RGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       185 s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~---------~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      .....++|+++|+++|+++|++..+|...+.++...         .+++.+|+.+++++++.+|+++.+|..++.++.. 
T Consensus        41 ~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~-  119 (334)
T d1dcea1          41 AGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR-  119 (334)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-
T ss_pred             cccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH-
Confidence            334459999999999999999999988777664432         2348899999999999999999999999888876 


Q ss_pred             cC--CHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHcCCchHHHHhhh
Q 020094          256 HK--DASRAESYFDQAVKSAPDDCYVL-ASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       256 ~G--d~deA~~yfekAL~ldP~d~~vl-~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      .+  ++++|+.+++++++++|.+..++ ..++.++...++.++|...++
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~  168 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD  168 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHH
Confidence            55  48999999999999999998876 466788888999999988776

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.99  E-value=7.7e-10  Score=91.47  Aligned_cols=78  Identities=17%  Similarity=0.048  Sum_probs=72.2

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ  254 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~  254 (331)
                      ..|+|.+|...+++++|+.+|+++|.++|.+..+++++|.++.. .|++++|+.+|+++++++|+|..++..+..+...
T Consensus        70 ~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~-lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          70 NLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            56899999999999999999999999999999999999999876 9999999999999999999999999777665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=5.4e-10  Score=90.30  Aligned_cols=89  Identities=11%  Similarity=-0.006  Sum_probs=76.5

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 020094          212 NYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA--HKDASRAESYFDQAVKSAPDD--CYVLASYAKFL  287 (331)
Q Consensus       212 nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~--~Gd~deA~~yfekAL~ldP~d--~~vl~~LA~~L  287 (331)
                      +++..+.. .+++++|++.|++|+.++|+++.++++||+++...  .+++++|+.+|++++..+|.+  ..+++++|.+|
T Consensus         4 ~l~n~~~~-~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVS-VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHH-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-HHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            44555444 78999999999999999999999999999999751  345668999999999999855  45899999999


Q ss_pred             HHcCCchHHHHhhh
Q 020094          288 WDAGDDEEEEQDNE  301 (331)
Q Consensus       288 ~~lG~~eEa~~~~~  301 (331)
                      ...|++++|.+.++
T Consensus        83 ~~~g~~~~A~~~~~   96 (122)
T d1nzna_          83 YRLKEYEKALKYVR   96 (122)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHH
Confidence            99999999998887

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=3.5e-10  Score=110.30  Aligned_cols=113  Identities=17%  Similarity=0.022  Sum_probs=84.7

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA  255 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~  255 (331)
                      ..|++..+...+++++|...|++++..+|.  .++.++|.++.. .+++++|+.+|++|++++|+++.+++++|.++.. 
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~-~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~-  198 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARY-RNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-  198 (497)
T ss_dssp             --------------------CCHHHHHHHH--HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-
Confidence            345566777788999999999999988875  577788988655 9999999999999999999999999999999988 


Q ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020094          256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGD  292 (331)
Q Consensus       256 ~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~  292 (331)
                      .|++.+|+.+|.||+.++|....++.+++.++.+..+
T Consensus       199 ~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         199 KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999876543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.94  E-value=7.3e-10  Score=91.40  Aligned_cols=73  Identities=14%  Similarity=0.099  Sum_probs=65.7

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020094          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---------AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA  290 (331)
Q Consensus       220 ~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~---------~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~l  290 (331)
                      +.+.|++|++.|++|++++|+|+.++.++|.++..         ..+++++|+.+|++|++++|++..+|+++|.+|...
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            36679999999999999999999999999999874         245678999999999999999999999999999887


Q ss_pred             CC
Q 020094          291 GD  292 (331)
Q Consensus       291 G~  292 (331)
                      |+
T Consensus        89 g~   90 (145)
T d1zu2a1          89 AF   90 (145)
T ss_dssp             HH
T ss_pred             cc
Confidence            64

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.91  E-value=4.5e-10  Score=102.33  Aligned_cols=118  Identities=15%  Similarity=0.034  Sum_probs=100.8

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020094          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (331)
Q Consensus       182 ~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~de  261 (331)
                      -..+.|++++|+..|+++++.+|+|+.++.+|+.+++. .|++++|++.|+++++++|++..++..|+.++.. .++.++
T Consensus         5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a-~~~~~~   82 (264)
T d1zbpa1           5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-AQARKD   82 (264)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-ccccHH
Confidence            34567999999999999999999999999999999877 9999999999999999999999999889888876 677777


Q ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          262 AESYFDQAVKS-APDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       262 A~~yfekAL~l-dP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      +...+.+.... .|.+...+...+.++...|+.++|...++
T Consensus        83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~  123 (264)
T d1zbpa1          83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL  123 (264)
T ss_dssp             HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence            76655554333 45556777788899999999999988776

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=1.4e-08  Score=87.54  Aligned_cols=123  Identities=11%  Similarity=0.130  Sum_probs=101.3

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILS  246 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~-----~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d------~~al~  246 (331)
                      -.|.++...|++++|+.+|++++...|++.     .++..+|.++.. .|++++|+.+|++++++.+..      ..++.
T Consensus        17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~   95 (366)
T d1hz4a_          17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHC-KGELTRSLALMQQTEQMARQHDVWHYALWSLI   95 (366)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence            357889999999999999999999999873     467788888765 999999999999999886543      34555


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          247 LYADLIWQAHKDASRAESYFDQAVKSAPD--------DCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       247 ~yA~ll~~~~Gd~deA~~yfekAL~ldP~--------d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                      .++.++.. .+++.+|..++.+++.+.+.        ...++..++.++...++.+++...++.
T Consensus        96 ~~~~~~~~-~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~  158 (366)
T d1hz4a_          96 QQSEILFA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS  158 (366)
T ss_dssp             HHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHH
Confidence            66677777 99999999999999987431        234677889999999999999877763

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.5e-10  Score=109.45  Aligned_cols=116  Identities=10%  Similarity=-0.004  Sum_probs=75.9

Q ss_pred             HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020094          182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR  261 (331)
Q Consensus       182 ~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~de  261 (331)
                      ++...+.|+.|+..|++++.++|++...+.++|..+.. .+++.+|+..+.+++..+|.  .++..+|.++.. .+++++
T Consensus        95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~-~~~~~~  170 (497)
T d1ya0a1          95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNK-QTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARY-RNQTSQ  170 (497)
T ss_dssp             HHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHH--HHHHHHHHHHHH-TTCHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHh-CCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHH-cccHHH
Confidence            34456778999999999999999999999999988665 99999999999999998885  566678988888 999999


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       262 A~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      |+.+|++|++++|++...+.++|.++...|+..+|...+.
T Consensus       171 A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~  210 (497)
T d1ya0a1         171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC  210 (497)
T ss_dssp             HHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999999999999999999987776

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.72  E-value=2.4e-08  Score=82.04  Aligned_cols=87  Identities=17%  Similarity=0.061  Sum_probs=74.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Q 020094          214 ARFLKEVRGDFAKAEELCGRAILANPSD------------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD------  275 (331)
Q Consensus       214 A~~L~~~~gd~ekAee~~erALeldP~d------------~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~------  275 (331)
                      |..++. .|+|++|++.|++||+++|+.            +.+|.+++.+++. .|++++|+.++++++++.|.      
T Consensus        16 g~~~~~-~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          16 AQRQLV-AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHH-HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHH-cCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhcccccccccc
Confidence            555444 799999999999999999875            3678889999988 99999999999999988542      


Q ss_pred             -----CHHHHHHHHHHHHHcCCchHHHHhhhh
Q 020094          276 -----DCYVLASYAKFLWDAGDDEEEEQDNEE  302 (331)
Q Consensus       276 -----d~~vl~~LA~~L~~lG~~eEa~~~~~~  302 (331)
                           ...+++++|.+|..+|++++|...++.
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~  125 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMPEFKK  125 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence                 234789999999999999999988873

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.69  E-value=7.6e-08  Score=82.14  Aligned_cols=91  Identities=8%  Similarity=-0.024  Sum_probs=74.2

Q ss_pred             chHHHHHhCCCcHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020094          178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNA----------------------LLLGNYARFLKEVRGDFAKAEELCGRAI  235 (331)
Q Consensus       178 N~A~~y~s~gd~ekA~e~yerAL~~nP~n~----------------------~~l~nLA~~L~~~~gd~ekAee~~erAL  235 (331)
                      +.+..+...|++++|..+|.+++.+.+++.                      .++.+++.++.. .|++++|+.++++++
T Consensus        16 ~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~-~g~~~~Al~~~~~al   94 (179)
T d2ff4a2          16 TAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIAELEALT   94 (179)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHHHHHHH
Confidence            456778889999999999999999987653                      345667777554 888888888888888


Q ss_pred             HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020094          236 LANPSDGNILSLYADLIWQAHKDASRAESYFDQAV  270 (331)
Q Consensus       236 eldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL  270 (331)
                      +++|.+..+|..++.+++. .|++++|+.+|+++.
T Consensus        95 ~~~P~~e~~~~~l~~al~~-~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          95 FEHPYREPLWTQLITAYYL-SDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHH
T ss_pred             HhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHH
Confidence            8888888888888888887 888888888888873

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.53  E-value=4.4e-07  Score=77.26  Aligned_cols=92  Identities=9%  Similarity=-0.050  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 020094          208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----------------------NILSLYADLIWQAHKDASRAESY  265 (331)
Q Consensus       208 ~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~----------------------~al~~yA~ll~~~~Gd~deA~~y  265 (331)
                      +.+...|..+.. .|++++|++.|.+|+.+.+.+.                      .++..++.++.. .|++++|+.+
T Consensus        12 ~~~~~~g~~~~~-~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~-~g~~~~Al~~   89 (179)
T d2ff4a2          12 VAEKTAGVHAAA-AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIAE   89 (179)
T ss_dssp             HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHH-CCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHH
Confidence            345566666555 9999999999999999987643                      456678888888 9999999999


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHHhhh
Q 020094          266 FDQAVKSAPDDCYVLASYAKFLWDAGDDEEEEQDNE  301 (331)
Q Consensus       266 fekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~~~~~  301 (331)
                      ++++++++|.+..+|..++.+|...|+.++|...++
T Consensus        90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~  125 (179)
T d2ff4a2          90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYR  125 (179)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            999999999999999999999999999999987766

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=2.3e-07  Score=79.71  Aligned_cols=122  Identities=20%  Similarity=0.114  Sum_probs=97.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNIL  245 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n----~~~l~nLA~~L~~~~gd~ekAee~~erALel------dP~d~~al  245 (331)
                      ....+.++...+++++|..++++++...|.+    ...+.++|.++.. .|++++|+.++++++..      .|....++
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         216 NKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQIL-LGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence            4557788999999999999999999987765    4456678888655 99999999999999854      45567788


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCchHHHHh
Q 020094          246 SLYADLIWQAHKDASRAESYFDQAVKSAPD---------DCYVLASYAKFLWDAGDDEEEEQD  299 (331)
Q Consensus       246 ~~yA~ll~~~~Gd~deA~~yfekAL~ldP~---------d~~vl~~LA~~L~~lG~~eEa~~~  299 (331)
                      ..++.+++. .|++++|+.+|++|+++.+.         ....+..+...+...++.+|++..
T Consensus       295 ~~la~~~~~-~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         295 LLLNQLYWQ-AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHH-CCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            889999998 99999999999999998552         234556666677777877777643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.37  E-value=3.9e-07  Score=82.46  Aligned_cols=77  Identities=23%  Similarity=0.262  Sum_probs=70.9

Q ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020094          220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGDDEEEE  297 (331)
Q Consensus       220 ~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~lG~~eEa~  297 (331)
                      ..|++++|++.|+++|+.+|+|+.++..++.++.. .|++++|+..|+++++++|++..++..++.++...+..+++.
T Consensus         8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            37999999999999999999999999999999999 999999999999999999999999999999988766665544

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.24  E-value=1.5e-06  Score=70.96  Aligned_cols=81  Identities=16%  Similarity=-0.012  Sum_probs=68.1

Q ss_pred             CHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094          206 NALLLGNYARFLKEV--RGDFAKAEELCGRAILANPSDG-NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS  282 (331)
Q Consensus       206 n~~~l~nLA~~L~~~--~gd~ekAee~~erALeldP~d~-~al~~yA~ll~~~~Gd~deA~~yfekAL~ldP~d~~vl~~  282 (331)
                      .....++||++|...  ..+..+|+.+++.++..+|.+. ++|+.+|..++. .|+|++|+.+++++|+++|+|..+..-
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~~~~~L~ieP~n~qA~~L  112 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGAL  112 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence            377889999887651  2456899999999999999765 799999999998 999999999999999999999988655


Q ss_pred             HHHHH
Q 020094          283 YAKFL  287 (331)
Q Consensus       283 LA~~L  287 (331)
                      .-.+.
T Consensus       113 ~~~Ie  117 (124)
T d2pqrb1         113 KSMVE  117 (124)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            54443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=98.14  E-value=1.2e-05  Score=63.97  Aligned_cols=106  Identities=16%  Similarity=0.113  Sum_probs=84.9

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HKDASRAE  263 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~---~Gd~deA~  263 (331)
                      .++++|+.+|+++.+.+  ++....+|+..   ...++++|+++|+++.+.  +++.+.+.++.++..-   ..++++|+
T Consensus         7 kd~~~A~~~~~kaa~~g--~~~a~~~l~~~---~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN--EMFGCLSLVSN---SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT--CTTHHHHHHTC---TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHHCC--Chhhhhhhccc---cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            48899999999998875  55666666643   368899999999999885  6789988888776541   35689999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHHhhh
Q 020094          264 SYFDQAVKSAPDDCYVLASYAKFLWD----AGDDEEEEQDNE  301 (331)
Q Consensus       264 ~yfekAL~ldP~d~~vl~~LA~~L~~----lG~~eEa~~~~~  301 (331)
                      .+|+++.+.  .++...++|+.+|..    ..+.++|..+++
T Consensus        80 ~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~  119 (133)
T d1klxa_          80 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE  119 (133)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHH
Confidence            999999875  578889999999987    456777877776

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.89  E-value=3.2e-05  Score=62.84  Aligned_cols=70  Identities=4%  Similarity=-0.103  Sum_probs=61.0

Q ss_pred             ccchHHHHHhCC---CcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020094          176 SGSNNNYSNNNH---GSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS  246 (331)
Q Consensus       176 ~~N~A~~y~s~g---d~ekA~e~yerAL~~nP~n~-~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~  246 (331)
                      ..|||-++....   +..+++.+++++++.+|.+. +.++++|..++. .|+|++|.++++++|+++|+|..++.
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            357888887653   45899999999999999875 799999988776 99999999999999999999999984

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.84  E-value=0.00012  Score=62.81  Aligned_cols=108  Identities=17%  Similarity=0.150  Sum_probs=86.4

Q ss_pred             ccchHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020094          176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSDGNILSLYADLI  252 (331)
Q Consensus       176 ~~N~A~~y~s~gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~---~~gd~ekAee~~erALeldP~d~~al~~yA~ll  252 (331)
                      ..|++..++..+++++|+.+|+++.+.  +++.+.++||.++..   +..++.+|..+++++...  +++.+...++.++
T Consensus         5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~l~~~~   80 (265)
T d1ouva_           5 LVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHLLGNLY   80 (265)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhcccccc
Confidence            457899999999999999999999764  689999999988665   256899999999999874  4778777777666


Q ss_pred             HHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020094          253 WQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD  289 (331)
Q Consensus       253 ~~~---~Gd~deA~~yfekAL~ldP~d~~vl~~LA~~L~~  289 (331)
                      ...   ..+.++|..+|++++...+  ......++..+..
T Consensus        81 ~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~  118 (265)
T d1ouva_          81 YSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHD  118 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccC
Confidence            531   3678999999999988654  5556667766765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.71  E-value=0.00026  Score=60.55  Aligned_cols=91  Identities=13%  Similarity=0.112  Sum_probs=73.1

Q ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020094          206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLAS  282 (331)
Q Consensus       206 n~~~l~nLA~~L~~~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~---~Gd~deA~~yfekAL~ldP~d~~vl~~  282 (331)
                      ||.+++++|..++. .+|+.+|+++|++|.+.  +|+.+++.++.+++.-   ..++.+|..+++++...  .+...+..
T Consensus         1 ~p~~~~~lG~~~~~-~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--~~~~a~~~   75 (265)
T d1ouva_           1 DPKELVGLGAKSYK-EKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--NYSNGCHL   75 (265)
T ss_dssp             CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHH
T ss_pred             CHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--cccchhhc
Confidence            68899999988776 99999999999999875  5889998898887652   46899999999998774  57788888


Q ss_pred             HHHHHHHc----CCchHHHHhhh
Q 020094          283 YAKFLWDA----GDDEEEEQDNE  301 (331)
Q Consensus       283 LA~~L~~l----G~~eEa~~~~~  301 (331)
                      ++.++...    .+.+++...++
T Consensus        76 l~~~~~~~~~~~~~~~~a~~~~~   98 (265)
T d1ouva_          76 LGNLYYSGQGVSQNTNKALQYYS   98 (265)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             cccccccccccchhhHHHHHHHh
Confidence            88888753    34555555554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.64  E-value=0.00028  Score=55.64  Aligned_cols=84  Identities=17%  Similarity=0.151  Sum_probs=68.9

Q ss_pred             CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHH
Q 020094          187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HKDAS  260 (331)
Q Consensus       187 gd~ekA~e~yerAL~~nP~n~~~l~nLA~~L~~---~~gd~ekAee~~erALeldP~d~~al~~yA~ll~~~---~Gd~d  260 (331)
                      .++++|+.+|+++.+.  +++.+.+.||.++..   ...|+.+|+++|++|.+.  .++.+.+.++.++..-   ..+++
T Consensus        37 ~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          37 INKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             SCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             cCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHH
Confidence            5789999999998764  789999999988643   135799999999999986  5688888888876652   35899


Q ss_pred             HHHHHHHHHHHhCC
Q 020094          261 RAESYFDQAVKSAP  274 (331)
Q Consensus       261 eA~~yfekAL~ldP  274 (331)
                      +|+.+|++|.++..
T Consensus       113 ~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         113 QAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHCCC
Confidence            99999999998755