Citrus Sinensis ID: 020109
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
No hits with e-value below 0.001 by BLAST
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| 255553177 | 305 | conserved hypothetical protein [Ricinus | 0.888 | 0.963 | 0.517 | 1e-65 | |
| 449436142 | 319 | PREDICTED: uncharacterized protein LOC10 | 0.921 | 0.956 | 0.498 | 2e-64 | |
| 118486453 | 304 | unknown [Populus trichocarpa] | 0.876 | 0.953 | 0.459 | 7e-60 | |
| 225442971 | 306 | PREDICTED: uncharacterized protein LOC10 | 0.897 | 0.970 | 0.464 | 6e-57 | |
| 224144206 | 307 | predicted protein [Populus trichocarpa] | 0.888 | 0.957 | 0.450 | 4e-56 | |
| 297743453 | 289 | unnamed protein product [Vitis vinifera] | 0.864 | 0.989 | 0.467 | 5e-56 | |
| 147823174 | 306 | hypothetical protein VITISV_012768 [Viti | 0.906 | 0.980 | 0.451 | 6e-55 | |
| 356519331 | 315 | PREDICTED: uncharacterized protein LOC10 | 0.903 | 0.949 | 0.456 | 6e-55 | |
| 356555346 | 282 | PREDICTED: uncharacterized protein LOC10 | 0.812 | 0.953 | 0.413 | 3e-52 | |
| 225445531 | 288 | PREDICTED: uncharacterized protein LOC10 | 0.845 | 0.972 | 0.440 | 9e-52 |
| >gi|255553177|ref|XP_002517631.1| conserved hypothetical protein [Ricinus communis] gi|223543263|gb|EEF44795.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 177/342 (51%), Positives = 222/342 (64%), Gaps = 48/342 (14%)
Query: 1 MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHK 60
MLLRSSSTPIL+SWLP S SS EPE Q L+RT+S+SL+ S K
Sbjct: 1 MLLRSSSTPILNSWLPH---------SKESSPEPEFQALKRTKSISLTGSFRSQPSFDDK 51
Query: 61 LLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSH-----DHHQAKES---SSRIQRLFSS 112
+TT + ++++ + K N +PP + D KE+ SSRIQR+FSS
Sbjct: 52 KVTT----QTLQETNLQKIKNASHGRPPQSKKQQCKKDSDDEIKKEAIVPSSRIQRMFSS 107
Query: 113 SGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGG---G 169
SGLG ++ +DD+ + E E+G G +QT+V+GGG G+ GG G GG
Sbjct: 108 SGLGGRVA---NDDDDDDDEKEEGRG--LQTLVVGGGSGSGGGGGVCGGSGGRRSDGGES 162
Query: 170 GGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE 229
GGS F +G+ STDAYY+KMI A+PGNALLLGNYA+FLKEV+GDFAKAEE
Sbjct: 163 NGGSEF-----------YGNESTDAYYQKMISADPGNALLLGNYAKFLKEVKGDFAKAEE 211
Query: 230 LCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289
CGRAILANPSDGN+LS+YADLIWQ KDA RAESYFDQAVK+AP+DC+VLASYA+FLWD
Sbjct: 212 FCGRAILANPSDGNVLSVYADLIWQKEKDAERAESYFDQAVKTAPEDCFVLASYARFLWD 271
Query: 290 AGEDEEEEQDNEEGQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
A E+EE+E ++E+ H+T SP FF+G PL AAS
Sbjct: 272 AEEEEEDEYESEDCPHETK----SPSGFFNGL----PLAAAS 305
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436142|ref|XP_004135853.1| PREDICTED: uncharacterized protein LOC101208051 [Cucumis sativus] gi|449491043|ref|XP_004158782.1| PREDICTED: uncharacterized LOC101208051 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 172/345 (49%), Positives = 218/345 (63%), Gaps = 40/345 (11%)
Query: 1 MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHH-----HQ 55
MLLR++STPIL+SWL Q+ SS S SN ++ LQRT+S+SL H
Sbjct: 1 MLLRTNSTPILNSWLHQFK---SSPSESN-----QIHHLQRTKSISLISSFHLPPPSVST 52
Query: 56 SRKHKLLTTIYQ------RKEIRDSQMNKKGNIRALKPPPASHSHDHH---QAKESSSRI 106
+++ + + RK+I + K ++ D H + SSS I
Sbjct: 53 ESSNRVTQNLLESDSTDPRKKI---PITKSSKVKVKSRENGVSVRDQHLKPTSDSSSSSI 109
Query: 107 QRLFSSSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDA 166
+F +SGLG K + DEK +QT+V+GGG+GN+GG++C G G G
Sbjct: 110 HGVFLNSGLGLKFPNDEVCDEKRD-------ACILQTLVVGGGMGNDGGRVCGGSGRGSD 162
Query: 167 GGGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK 226
GGGGG +G SG NN+ HGS+STDAYY+KMIEANP NALLLGNYA+FLKEV GDF+K
Sbjct: 163 GGGGGDNGRSGFNNH-----HGSNSTDAYYQKMIEANPNNALLLGNYAKFLKEVHGDFSK 217
Query: 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286
AEE CGRAILA+P+D ++LSLYADLIW +DA RAE+YFDQAVKSAPDDCY+LASYA+F
Sbjct: 218 AEEFCGRAILADPNDASVLSLYADLIWHTQRDARRAETYFDQAVKSAPDDCYLLASYARF 277
Query: 287 LWDAGEDEEEEQDNEEGQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
LWD D E D+ E Q++T+ SH P F HGA HHSPL A S
Sbjct: 278 LWDTDVDNE---DDTEDQYETEESHPLHPGFSHGAPHHSPLAATS 319
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118486453|gb|ABK95066.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 237 bits (604), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 158/344 (45%), Positives = 198/344 (57%), Gaps = 54/344 (15%)
Query: 1 MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPE-LQVLQRTRSVSLS---------DD 50
MLLRSSSTP L+SW+P +SK+ S EPE + +Q+TR +SL+
Sbjct: 1 MLLRSSSTPFLNSWIPPHSKEPSP--------EPESVHQIQKTRPISLTASSSSPFSSIS 52
Query: 51 HHHHQSRKHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLF 110
H S K +T + ++RD + K+ K S+ + +
Sbjct: 53 SQDHDSIKR--MTRAFSEADLRDLSVPKR--------------------KPSNGILNGIP 90
Query: 111 SSSGLGEKLLKKDDDDEKEGCEV-EDGGGS--YVQTMVMGGGLGNNGGKICDGRGGGDAG 167
+ EK+ + EGCE E G G ++ +V GGG G K C GRG D G
Sbjct: 91 VDEEVEEKVSFWEGGLFFEGCEAGEKGEGDNGVLEVLVTGGGGDGGGRKFCGGRGRSDFG 150
Query: 168 GGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKA 227
GG SGS + N G +TDAYY+ MIEANPGN L L NYARFLKEVR DF KA
Sbjct: 151 DDGG----SGSRES----NEGIETTDAYYQTMIEANPGNPLFLRNYARFLKEVRLDFVKA 202
Query: 228 EELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287
EE CGRAILANP+D ++LS+YADLIWQ+HKDASRAESYF +AVK+APDDCYV+ASYA+FL
Sbjct: 203 EEYCGRAILANPNDADVLSMYADLIWQSHKDASRAESYFLRAVKAAPDDCYVMASYARFL 262
Query: 288 WDAGEDEEEEQDNEEGQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
WDA EEEE + E + + S SPP FFHG+ P AAS
Sbjct: 263 WDA---EEEEGEEGEREQNENMSKMSPPTFFHGSKPPLPPLAAS 303
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442971|ref|XP_002267739.1| PREDICTED: uncharacterized protein LOC100243938 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 227 bits (578), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 158/340 (46%), Positives = 196/340 (57%), Gaps = 43/340 (12%)
Query: 1 MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQV---LQRTRSVSLSDDHHHHQSR 57
MLLRSSSTPIL+SW+ Y KD+S PE + + +T+S+SLS QS
Sbjct: 1 MLLRSSSTPILNSWIQPYGKDTS----------PETDLVHQIPKTKSLSLSASF---QSP 47
Query: 58 KHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAK------ESSSRIQRLFS 111
H + ++ +M + + L+ PP ++H+ + E I+ L S
Sbjct: 48 PHTAPSITTSAGSLQ--KMARALSETDLRDPPKRNTHEKWFSPPTVDEGEEQDSIRSLLS 105
Query: 112 SSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGG 171
SSGLGE E C VEDGG + ++ M G G G G G +GG G
Sbjct: 106 SSGLGES----------ERCGVEDGGPATLE-MGGGIRGNGGGIFGGGGYGKGSSGGDGD 154
Query: 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELC 231
G G +NY G STD YY+KMIEANP NAL LGNYA+FLKEVRGD KAEE C
Sbjct: 155 GHGGGAYESNY-----GHESTDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYC 209
Query: 232 GRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291
GRAIL NPSDGN+LS YADLIW KDA RAE+YF+QAV+ APDDCYVLASYA FLW+
Sbjct: 210 GRAILVNPSDGNVLSFYADLIWNNQKDAQRAETYFNQAVRVAPDDCYVLASYAHFLWETE 269
Query: 292 EDEEEEQDNEEGQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
E++EE+ E T ++H P+FF G HSPL AAS
Sbjct: 270 EEDEEDSRYETA---TANTHGFSPSFFPGGPFHSPLAAAS 306
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Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224144206|ref|XP_002325219.1| predicted protein [Populus trichocarpa] gi|222866653|gb|EEF03784.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 224 bits (571), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 155/344 (45%), Positives = 195/344 (56%), Gaps = 50/344 (14%)
Query: 1 MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPE-LQVLQRTRSVSLS----------D 49
MLLRSSSTPIL+SW+P +SK+ S EPE L +Q TRS+SL+
Sbjct: 1 MLLRSSSTPILNSWIPPHSKEPSP--------EPESLHQIQITRSISLAASSSGPFSSIS 52
Query: 50 DHHHHQSRKHKLLTTIYQRKEIRDSQMNK-KGNIRALKPPPASHSHDHHQAKESSSRIQ- 107
H + + K+ + + ++RD + K K + + L D K+ S
Sbjct: 53 SQGHDSNERVKI---AFSKNDLRDFSVPKRKPSNKILNGITVDQEVDEEVEKKVSFWESG 109
Query: 108 RLFSSSGLGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAG 167
LF G+GEK EG D G + G L GG GR G
Sbjct: 110 LLFEGFGVGEK---------GEG----DNG--------VLGVLVTGGGSDGGGRKFCGGG 148
Query: 168 GGGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKA 227
GG G + + +N G +TD YY+ MIEANPGN L L NYARFLKE+R DF KA
Sbjct: 149 GGFGSDFGDDGGSRFRESNEGIETTDVYYQTMIEANPGNPLFLRNYARFLKEIRLDFVKA 208
Query: 228 EELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287
EE CGRAILANP+D ++LS+YADLIWQ HK+ASRAESYFD+AVK+APDDCYV+ASYA+FL
Sbjct: 209 EEYCGRAILANPNDADVLSMYADLIWQGHKNASRAESYFDRAVKAAPDDCYVMASYARFL 268
Query: 288 WDAGEDEEEEQDNEEGQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
WDA E+EE E+D E + S SPP FFHG+ PL A+S
Sbjct: 269 WDAEEEEEGERDQRE-----NMSKLSPPTFFHGSRPLPPLAASS 307
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297743453|emb|CBI36320.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 224 bits (571), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 156/334 (46%), Positives = 193/334 (57%), Gaps = 48/334 (14%)
Query: 1 MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQV---LQRTRSVSLSDDHHHHQSR 57
MLLRSSSTPIL+SW+ Y KD+S PE + + +T+S+SLS QS
Sbjct: 1 MLLRSSSTPILNSWIQPYGKDTS----------PETDLVHQIPKTKSLSLSASF---QSP 47
Query: 58 KHKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGE 117
H + ++ +M + + L+ PP ++H+ + L SSSGLGE
Sbjct: 48 PHTAPSITTSAGSLQ--KMARALSETDLRDPPKRNTHE-----------KCLLSSSGLGE 94
Query: 118 KLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSGFSG 177
E C VEDGG + ++ M G G G G G +GG G G G
Sbjct: 95 S----------ERCGVEDGGPATLE-MGGGIRGNGGGIFGGGGYGKGSSGGDGDGHGGGA 143
Query: 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237
+NY G STD YY+KMIEANP NAL LGNYA+FLKEVRGD KAEE CGRAIL
Sbjct: 144 YESNY-----GHESTDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYCGRAILV 198
Query: 238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297
NPSDGN+LS YADLIW KDA RAE+YF+QAV+ APDDCYVLASYA FLW+ E++EE+
Sbjct: 199 NPSDGNVLSFYADLIWNNQKDAQRAETYFNQAVRVAPDDCYVLASYAHFLWETEEEDEED 258
Query: 298 QDNEEGQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
E T ++H P+FF G HSPL AAS
Sbjct: 259 SRYETA---TANTHGFSPSFFPGGPFHSPLAAAS 289
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147823174|emb|CAN73025.1| hypothetical protein VITISV_012768 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 152/337 (45%), Positives = 188/337 (55%), Gaps = 37/337 (10%)
Query: 1 MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSDDHHHHQSRKHK 60
MLLRSSSTPIL+SW+ Y KD+S PE ++ + S H
Sbjct: 1 MLLRSSSTPILNSWIQPYGKDTS----------PETDLVHQIPKTKSLSLSASFXSPPHT 50
Query: 61 LLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAK------ESSSRIQRLFSSSG 114
+ ++ +M + + L+ PP ++H+ + E I+ L SSSG
Sbjct: 51 APSITTSAGSLQ--KMARALSETDLRDPPKRNTHEKWFSPPTVDEGEEQDSIRSLLSSSG 108
Query: 115 LGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSG 174
LGE E C VEDGG + ++ M G G G G G +GG G G G
Sbjct: 109 LGES----------ERCGVEDGGPATLE-MGGGIRGNGGGIFGGGGYGKGSSGGDGDGHG 157
Query: 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234
+NY G STD YY+KMIEANP NAL LGNYA+FLKEVRGD KAEE CGRA
Sbjct: 158 GGAYESNY-----GHESTDVYYQKMIEANPENALFLGNYAKFLKEVRGDLVKAEEYCGRA 212
Query: 235 ILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294
IL NPSDGN+LS YADLIW KDA RAE+YF+QAV+ APDDCYVLASYA FLW+ E++
Sbjct: 213 ILVNPSDGNVLSFYADLIWNNQKDAQRAETYFNQAVRVAPDDCYVLASYAHFLWETEEED 272
Query: 295 EEEQDNEEGQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
EE+ E T ++H P+FF G HSPL AAS
Sbjct: 273 EEDSRYETA---TANTHGFSPSFFPGGPFHSPLAAAS 306
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356519331|ref|XP_003528326.1| PREDICTED: uncharacterized protein LOC100784802 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 220 bits (561), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 154/337 (45%), Positives = 198/337 (58%), Gaps = 38/337 (11%)
Query: 1 MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPE--LQVLQRTRSVSLSDDHHHHQSRK 58
MLLRSSS PIL S L YSK+ S EPE L + + ++SLS
Sbjct: 1 MLLRSSSAPILTSLL-FYSKEFPS--------EPEHILHLPKTASALSLS-----QSLVD 46
Query: 59 HKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSR--IQRLFSSSGLG 116
L + R++ R N N +++K D Q ++ I LFSS L
Sbjct: 47 IDLKNSSSPRRKNRVPLSNVPNNQQSIKINERYEGKDPQQKTFMKAKPSILELFSSFDLD 106
Query: 117 EKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKIC---DGRGGGDAGGGGGGS 173
+ +L D E+ G +D S++QT VMG G+G++GG IC +G G G GG G
Sbjct: 107 KGVL----DHEECGAGKKD---SWLQTSVMGAGMGSDGGWICGGCNGSGRGSDGGHGRRW 159
Query: 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 233
GF N+HG TDAYY+ MIEANP +ALLLGNYA+FLKEV D+ KA+E R
Sbjct: 160 GFD------EGNDHGRDRTDAYYQNMIEANPSDALLLGNYAKFLKEVCEDYPKAKEYLER 213
Query: 234 AILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293
AILANP DG+ILSLYA+LIWQ KDA +AE YFDQA+KSAPDD YVLASYA FLWD
Sbjct: 214 AILANPDDGHILSLYAELIWQTEKDADQAEGYFDQAIKSAPDDSYVLASYANFLWDV--- 270
Query: 294 EEEEQDNEEGQHQTDHSHTSPPNFFHGASHHSPLTAA 330
EE+ ++++ ++++DHSHT P + FHG +HH T A
Sbjct: 271 -EEDDEDKDCKNKSDHSHTYPTDLFHGTNHHLHSTVA 306
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356555346|ref|XP_003545994.1| PREDICTED: uncharacterized protein LOC100801597 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 139/336 (41%), Positives = 175/336 (52%), Gaps = 67/336 (19%)
Query: 1 MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPELQVLQRTRSVSLSD---DHHHHQSR 57
MLLR+S+ PI SWLP SS S L + T ++ D D H+H
Sbjct: 1 MLLRTSTVPIPSSWLPH---------SSQSQPLLHLPITLSTPIKNMLDTDTDPHNHTPP 51
Query: 58 KHKLLTTIYQRKEI---RDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSG 114
K + T++ + + R +M + + K ++ K + +++LFSSSG
Sbjct: 52 KPEKKTSMSRSNVLKNHRSIKMKESDQVEEAK-------QKIYKKKLTPPSVRKLFSSSG 104
Query: 115 LGEKLLKKDDDDEKEGCEVEDGGGSYVQTMVMGGGLGNNGGKICDGRGGGDAGGGGGGSG 174
L D EG S +QT+V GGG
Sbjct: 105 L----------DMHEG--------SRLQTLV----------------------MGGGMGS 124
Query: 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234
G +HG TDAYY+ MI+ANP NALLLGNYA+FLKEVRGD+ KAEE RA
Sbjct: 125 GGGRICGGGRGSHGRDGTDAYYQNMIQANPNNALLLGNYAKFLKEVRGDYPKAEEYLERA 184
Query: 235 ILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294
ILANP D N+LSLYADLIWQ K+A RAE YFDQAVK+APDDCYVLASYAKFLWD EDE
Sbjct: 185 ILANPGDANVLSLYADLIWQTEKNADRAEGYFDQAVKTAPDDCYVLASYAKFLWDVEEDE 244
Query: 295 EEEQDNEEGQHQTDHSHTSPPNFFHGASHHSPLTAA 330
+++ QH+TDH H PP+ F +TA
Sbjct: 245 -----DKDCQHKTDHGHAYPPDLFQETEDRPHVTAV 275
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445531|ref|XP_002285275.1| PREDICTED: uncharacterized protein LOC100257716 [Vitis vinifera] gi|297738966|emb|CBI28211.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 210 bits (534), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 149/338 (44%), Positives = 198/338 (58%), Gaps = 58/338 (17%)
Query: 1 MLLRSSSTPILHSWLPQYSKDSSSSSSSNSSTEPEL--QVLQRTRSVSLSDDHHHHQSRK 58
MLLRSSSTPIL+SW P S SS+EPE+ Q+L +RS+SL+
Sbjct: 1 MLLRSSSTPILNSWPPN---------SKESSSEPEMVPQILL-SRSISLTTSSLSSVEGS 50
Query: 59 HKLLTTIYQRKEIRDSQMNKKGNIRALKPPPASHSHDHHQAKESSSRIQRLFSSSGLGEK 118
K ++ ++R+ + K+ I + + RL S
Sbjct: 51 SKKMSRALSETDLRELSLPKRKPI--------------------TKTVNRLSS------- 83
Query: 119 LLKKDDDDEKEGCEVEDGGGSYVQTMVMGG---GLGNNGGKICDGR--GGGDAGGGGGGS 173
L D+ +E++ C + +T GG G+G++ G C+G GG GGGG
Sbjct: 84 -LPVDEREEEDSCPIS-------RTASYGGLWWGVGSDAG--CEGVCVEGGSEGGGGSDG 133
Query: 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGR 233
G++ + Y ++N+G+ + ++YY MIEANPGNALLLGNYARFLKEVRGD+ KAEE CGR
Sbjct: 134 GYAHGKSGYGDSNNGNGNMESYYRTMIEANPGNALLLGNYARFLKEVRGDYIKAEEYCGR 193
Query: 234 AILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293
AILANP+DGNILSL+ADLIWQ HKD+ RAESYFDQAVK++PDDC+VLASYA FLW+ E+
Sbjct: 194 AILANPNDGNILSLFADLIWQVHKDSDRAESYFDQAVKASPDDCFVLASYAHFLWEEEEE 253
Query: 294 EEEEQDNEEGQHQTDHSHTSPPNFFHGASHHSPLTAAS 331
EEE++ E + SH F GAS P AA+
Sbjct: 254 EEEKERVEGEYMKETSSHP----VFRGASPSLPPLAAA 287
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 331 | ||||||
| TAIR|locus:2016229 | 305 | AT1G80130 [Arabidopsis thalian | 0.422 | 0.459 | 0.531 | 2.6e-45 | |
| TAIR|locus:2149314 | 290 | AT5G20190 "AT5G20190" [Arabido | 0.404 | 0.462 | 0.581 | 9.6e-44 | |
| TAIR|locus:2127781 | 238 | AT4G32340 "AT4G32340" [Arabido | 0.296 | 0.411 | 0.656 | 1.3e-31 | |
| TAIR|locus:2141030 | 274 | AT4G17940 "AT4G17940" [Arabido | 0.290 | 0.350 | 0.562 | 1.5e-26 | |
| TAIR|locus:2197768 | 310 | TPR4 "tetratricopeptide repeat | 0.283 | 0.303 | 0.473 | 4e-19 | |
| TAIR|locus:2060669 | 536 | AT2G29670 [Arabidopsis thalian | 0.296 | 0.182 | 0.397 | 3.5e-14 | |
| TAIR|locus:2025067 | 552 | AT1G07280 "AT1G07280" [Arabido | 0.296 | 0.177 | 0.387 | 3.7e-14 | |
| TAIR|locus:2075616 | 515 | AT3G47080 [Arabidopsis thalian | 0.296 | 0.190 | 0.357 | 2.1e-10 |
| TAIR|locus:2016229 AT1G80130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 394 (143.8 bits), Expect = 2.6e-45, Sum P(2) = 2.6e-45
Identities = 75/141 (53%), Positives = 94/141 (66%)
Query: 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
TD YY +MI++NPGN+LL GNYA+FLKEV+GD KAEE C RAIL N +DGN+LSLYADL
Sbjct: 165 TDTYYREMIDSNPGNSLLTGNYAKFLKEVKGDMKKAEEYCERAILGNTNDGNVLSLYADL 224
Query: 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAXXXXXXXXXXXXXXHQTDHS- 310
I H+D RA SY+ QAVK +P+DCYV ASYA+FLWD + +D +
Sbjct: 225 ILHNHQDRQRAHSYYKQAVKMSPEDCYVQASYARFLWDVDEDEEDEALGEEEENLSDETG 284
Query: 311 HTSPPNFFHGASHHSPLTAAS 331
H P F H+ +TA+S
Sbjct: 285 HVPPTTMFRDFPQHTSITASS 305
|
|
| TAIR|locus:2149314 AT5G20190 "AT5G20190" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 422 (153.6 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
Identities = 82/141 (58%), Positives = 103/141 (73%)
Query: 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
TD +Y KMIEANPGN + L NYA+FLKEVR D+ KAEE CGRAIL +P+DGN+L++YA+L
Sbjct: 156 TDVHYRKMIEANPGNGIFLSNYAKFLKEVRKDYLKAEEYCGRAILVSPNDGNVLAMYAEL 215
Query: 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAXXXXXXXXXXXXXXHQTDHSH 311
+W+ HKD+SRAE+YF+QAV +AP+DCYV ASYA+FLWDA H+ + H
Sbjct: 216 VWKIHKDSSRAENYFNQAVAAAPEDCYVQASYARFLWDAEEEEEEEKEER---HEEELEH 272
Query: 312 -TSPPNFFHGASHHSPLTAAS 331
TS NFF G S P+TA S
Sbjct: 273 QTSRMNFFTGPS---PITAMS 290
|
|
| TAIR|locus:2127781 AT4G32340 "AT4G32340" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 65/99 (65%), Positives = 79/99 (79%)
Query: 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADL 251
D YYE+MI+ PG+ LLL NYARFLKEV+GD KAEE C RA+L+ DG +LS+Y DL
Sbjct: 111 DGYYEEMIQRYPGDTLLLSNYARFLKEVKGDGRKAEEYCERAMLSESGRDGELLSMYGDL 170
Query: 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290
IW+ H D RA+SY+DQAV+S+PDDC VLASYA+FLWDA
Sbjct: 171 IWKNHGDGVRAQSYYDQAVQSSPDDCNVLASYARFLWDA 209
|
|
| TAIR|locus:2141030 AT4G17940 "AT4G17940" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 54/96 (56%), Positives = 69/96 (71%)
Query: 195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
YY +M+ +NP N+LLL NY +FL EV D AEE GRAIL NP DG LS+Y LIW+
Sbjct: 153 YYREMLRSNPNNSLLLMNYGKFLYEVEKDAEGAEEYYGRAILENPGDGEALSMYGRLIWE 212
Query: 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290
+D RA+ YFDQAV ++P+DC VL SYA+F+W+A
Sbjct: 213 TKRDEKRAQGYFDQAVNASPNDCMVLGSYARFMWEA 248
|
|
| TAIR|locus:2197768 TPR4 "tetratricopeptide repeat 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
Identities = 45/95 (47%), Positives = 66/95 (69%)
Query: 195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
YY+ M+E P + LLL NYA+FL E +GD + AEE + + PSDG L+ Y L+ +
Sbjct: 124 YYKGMLEEYPLHPLLLKNYAKFL-EYKGDLSGAEEYYHKCTVVEPSDGVALANYGRLVMK 182
Query: 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289
H+D ++A SYF++AV+++PDD VLA+YA FLW+
Sbjct: 183 LHQDEAKAMSYFERAVQASPDDSIVLAAYASFLWE 217
|
|
| TAIR|locus:2060669 AT2G29670 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 39/98 (39%), Positives = 53/98 (54%)
Query: 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
T+ Y+ + P N LLL NYA+FL V D +AEE RA+ P D S YA
Sbjct: 420 TELMYQTELSQEPNNPLLLANYAQFLYLVSNDHDRAEEYFKRAVGVEPKDAEAFSKYATF 479
Query: 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289
+W+A D AE F +A+ + P + Y A+YA FLW+
Sbjct: 480 LWRARDDLWAAEETFLEAIDADPTNSYYAANYANFLWN 517
|
|
| TAIR|locus:2025067 AT1G07280 "AT1G07280" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 3.7e-14, P = 3.7e-14
Identities = 38/98 (38%), Positives = 57/98 (58%)
Query: 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
T+ Y+ + PGN LLL NYA+FL + D+ +AE+ RA A P+D L+ YA
Sbjct: 435 TELLYQTGLSQEPGNVLLLANYAQFLYLIIHDYDRAEKYFKRAAKAEPADAEALNKYATF 494
Query: 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289
+W+A D RAE + +A+ + P + A+YA FLW+
Sbjct: 495 LWRARNDIWRAEETYLEAISADPTNSVYSANYAHFLWN 532
|
|
| TAIR|locus:2075616 AT3G47080 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 159 (61.0 bits), Expect = 2.1e-10, Sum P(2) = 2.1e-10
Identities = 35/98 (35%), Positives = 51/98 (52%)
Query: 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
T+ Y+ + P N LLL NYA+FL V D +AE +AI + D S YA
Sbjct: 400 TELLYKIGLAQEPDNHLLLANYAQFLYLVTQDHERAENCFKKAIESEDVDAETYSKYAIF 459
Query: 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289
+W+ D AE F +A+ + P + + A+YA FLW+
Sbjct: 460 LWKVRNDLWAAEENFLEAISADPTNSFYAANYANFLWN 497
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 331 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-08 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 1e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-05 | |
| pfam13414 | 69 | pfam13414, TPR_11, TPR repeat | 5e-05 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-05 | |
| pfam13432 | 65 | pfam13432, TPR_16, Tetratricopeptide repeat | 8e-05 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 1e-04 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 2e-04 | |
| COG3063 | 250 | COG3063, PilF, Tfp pilus assembly protein PilF [Ce | 2e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 3e-04 | |
| PHA00370 | 297 | PHA00370, III, attachment protein | 0.001 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.002 | |
| TIGR02917 | 899 | TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system | 0.002 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 3e-08
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 195 YYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254
YYEK +E +P NA N A + G + +A E +A+ +P + ++
Sbjct: 22 YYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK 80
Query: 255 AHKDASRAESYFDQAVKSAPD 275
K A +++A++ P+
Sbjct: 81 LGKYE-EALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 1e-06
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265
NA L N L + GD+ +A E +A+ +P + A + KD A
Sbjct: 2 NAEALKNLGNALFK-LGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60
Query: 266 FDQAVKSAP 274
++A++ P
Sbjct: 61 LEKALELDP 69
|
Length = 69 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-05
Identities = 14/75 (18%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280
GD+ +A E +A+ +P + + A + A +++A++ PD+
Sbjct: 13 LGDYDEALEYYEKALELDPDNADAYYNLA-AAYYKLGKYEEALEDYEKALELDPDNAKAY 71
Query: 281 ASYAKFLWDAGEDEE 295
+ + G+ EE
Sbjct: 72 YNLGLAYYKLGKYEE 86
|
Length = 100 |
| >gnl|CDD|222112 pfam13414, TPR_11, TPR repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 5e-05
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239
YEK +E +P NA N A ++ D+ +A E +A+ +P
Sbjct: 24 EAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLEKALELDP 69
|
Length = 69 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (102), Expect = 5e-05
Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 3/112 (2%)
Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL-- 251
EK + +P L A GD+ +A EL +A+ +P + L
Sbjct: 116 ELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGA 175
Query: 252 IWQAHKDASRAESYFDQAVKSAPDDCY-VLASYAKFLWDAGEDEEEEQDNEE 302
+ +A A ++A+K PDD L + G+ EE + E+
Sbjct: 176 LLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEK 227
|
Length = 291 |
| >gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 8e-05
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276
GD+ +A A+ P L L + + + + A + A+ + PDD
Sbjct: 10 AGDYDEALAALEAALARYPLAAEALLLLGEALLRQ-GRLAEAAALLRAALAADPDD 64
|
Length = 65 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 27/103 (26%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Query: 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252
+Y+ +++ P NA++L N A E +A E RA+ P+ IL L+
Sbjct: 790 IKHYQTVVKKAPDNAVVLNNLAWLYLE--LKDPRALEYAERALKLAPNIPAILDTLGWLL 847
Query: 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEE 295
+ +A RA +AV AP+ + A L G E
Sbjct: 848 VEK-GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAE 889
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 2e-04
Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249
D Y K + P N +L NY FL +G +A + RA+ P+ G
Sbjct: 86 DLADESYRKALSLAPNNGDVLNNYGAFLCA-QGRPEEAMQQFERALAD-PAYGEPSDTLE 143
Query: 250 DLIW---QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292
+L +A + +AE Y +A++ P L A+ + AG+
Sbjct: 144 NLGLCALKAGQFD-QAEEYLKRALELDPQFPPALLELARLHYKAGD 188
|
Length = 250 |
| >gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 2e-04
Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280
+GD+A+A++ +A+ +PS + A +Q + A+ + +A+ AP++ VL
Sbjct: 48 QGDYAQAKKNLEKALEHDPSYYLAHLVRA-HYYQKLGENDLADESYRKALSLAPNNGDVL 106
Query: 281 ASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHTSPPN 316
+Y FL G EE Q E + S
Sbjct: 107 NNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTL 142
|
Length = 250 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 38.5 bits (90), Expect = 3e-04
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 7/79 (8%)
Query: 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAI----LANPSDGNILSLYADL--IWQAH 256
+P A L N A L+ GD+ +A EL +A+ +L ++ A
Sbjct: 1 HPDLAAALNNLALVLRR-LGDYDEALELLEKALELARELGEDHPETARALNNLARLYLAL 59
Query: 257 KDASRAESYFDQAVKSAPD 275
D A Y ++A+
Sbjct: 60 GDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|164795 PHA00370, III, attachment protein | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 28/73 (38%), Positives = 31/73 (42%), Gaps = 2/73 (2%)
Query: 135 DGGGSYVQTMVMGG--GLGNNGGKICDGRGGGDAGGGGGGSGFSGSNNNYSNNNHGSSST 192
DGGG+ GG G GN GG G GG GGG G G G + S G +
Sbjct: 85 DGGGTGEGGSDTGGDTGGGNTGGGSGGGDTGGSGGGGSDGGGSEGGSTGKSLTKEGVGAG 144
Query: 193 DAYYEKMIEANPG 205
D Y KM AN
Sbjct: 145 DFDYPKMANANKD 157
|
Length = 297 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.4 bits (90), Expect = 0.002
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 7/111 (6%)
Query: 194 AYYEKMIE--ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251
EK +E P A L N L+ G + +A EL +A+ +P +L A
Sbjct: 80 ELLEKALELELLPNLAEALLNLGLLLEA-LGKYEEALELLEKALALDPDPDLAEALLALG 138
Query: 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302
D A +++A++ P+ L A+ L G E EE
Sbjct: 139 ALYELGDYEEALELYEKALELDPE----LNELAEALLALGALLEALGRYEE 185
|
Length = 291 |
| >gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 27/107 (25%), Positives = 50/107 (46%), Gaps = 2/107 (1%)
Query: 196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255
YE+ + +P + A+ L F +A L + A+P + + L L DL+ +
Sbjct: 148 YEQALAIDPRSLYAKLGLAQ-LALAENRFDEARALIDEVLTADPGNVDALLLKGDLL-LS 205
Query: 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302
+ A + + +A+ P++ VL + A L +AGE EE E+ +
Sbjct: 206 LGNIELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADA 252
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.59 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.55 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.5 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.49 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.48 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.47 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.47 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.46 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.44 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.44 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.44 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.43 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 99.43 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 99.41 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.4 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 99.38 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.38 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.38 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.36 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.36 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.36 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.35 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.34 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.33 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.31 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 99.28 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.27 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.27 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.26 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.26 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.25 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.24 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 99.23 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.23 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.21 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.21 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.21 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.19 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.14 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 99.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 99.12 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 99.1 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 99.09 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.08 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 99.05 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.03 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.03 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.03 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.01 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 99.01 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.99 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.99 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.98 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.98 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.95 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.95 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.94 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.93 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.91 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.91 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.91 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.9 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.9 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.89 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.89 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.89 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.88 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.87 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.86 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.84 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.84 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.83 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.81 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 98.78 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.78 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.76 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.76 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.75 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.74 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.74 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 98.73 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.73 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.71 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.7 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 98.7 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 98.68 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 98.65 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.63 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.63 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.62 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.57 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.54 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.54 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 98.53 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.53 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.52 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 98.51 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.5 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 98.49 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.49 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.49 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.48 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.47 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.46 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.46 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.43 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 98.43 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.42 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 98.4 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.4 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.39 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.38 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 98.36 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.36 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.36 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 98.34 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.32 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.32 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.32 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.32 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.31 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.3 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.28 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.26 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.25 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.23 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.23 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.22 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.21 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 98.18 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.16 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.14 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.14 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 98.13 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.13 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 98.09 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 98.09 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.09 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.07 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.06 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.02 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.01 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.01 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.0 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 98.0 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.98 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.96 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 97.94 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.91 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 97.91 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.87 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.87 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.86 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.83 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.83 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.82 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 97.8 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 97.79 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 97.77 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.77 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.73 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.73 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 97.64 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.64 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.62 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.61 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 97.61 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.6 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.55 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 97.54 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.54 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 97.52 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 97.52 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 97.51 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.5 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.49 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 97.43 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 97.42 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 97.4 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.38 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.38 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 97.38 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.35 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 97.33 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 97.28 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 97.22 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 97.2 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 97.17 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 97.13 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.1 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.09 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.05 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 97.01 | |
| KOG3824 | 472 | consensus Huntingtin interacting protein HYPE [Gen | 96.98 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 96.97 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 96.89 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 96.87 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.83 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.7 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 96.67 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 96.64 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 96.63 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 96.59 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 96.52 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 96.51 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.45 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 96.4 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.39 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.39 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 96.34 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 96.34 | |
| KOG0376 | 476 | consensus Serine-threonine phosphatase 2A, catalyt | 96.26 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 96.26 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.21 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.12 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 96.12 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.11 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.09 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.07 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 96.06 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.01 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 95.89 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.88 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.87 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 95.84 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.82 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 95.8 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 95.77 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.75 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 95.74 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.73 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.69 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 95.67 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.56 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 95.56 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.55 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.51 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 95.49 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.47 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 95.46 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 95.44 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 95.35 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 95.32 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.31 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.23 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 95.15 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 95.1 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 95.09 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 95.05 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 95.0 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 94.99 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 94.81 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 94.7 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.59 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 94.51 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.45 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.31 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.14 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.14 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 94.08 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 93.94 | |
| KOG0551 | 390 | consensus Hsp90 co-chaperone CNS1 (contains TPR re | 93.91 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 93.9 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 93.89 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 93.85 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 93.76 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.74 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 93.61 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 93.51 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 93.23 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.08 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 92.88 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 92.88 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 92.83 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 92.81 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 92.79 | |
| KOG0529 | 421 | consensus Protein geranylgeranyltransferase type I | 92.53 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 92.52 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.44 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 92.37 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.35 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 92.33 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 92.2 | |
| COG3914 | 620 | Spy Predicted O-linked N-acetylglucosamine transfe | 91.91 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 91.8 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 91.74 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 91.41 | |
| COG5191 | 435 | Uncharacterized conserved protein, contains HAT (H | 91.11 | |
| smart00386 | 33 | HAT HAT (Half-A-TPR) repeats. Present in several R | 91.01 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 90.86 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 90.81 | |
| PF10373 | 278 | EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP | 90.68 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 90.56 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 90.3 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 90.3 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 90.25 | |
| PLN03138 | 796 | Protein TOC75; Provisional | 89.73 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 89.33 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 89.3 | |
| KOG2300 | 629 | consensus Uncharacterized conserved protein [Funct | 88.88 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.43 | |
| PF07720 | 36 | TPR_3: Tetratricopeptide repeat; InterPro: IPR0117 | 87.94 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 87.84 | |
| KOG3807 | 556 | consensus Predicted membrane protein ST7 (tumor su | 87.72 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.07 | |
| KOG0530 | 318 | consensus Protein farnesyltransferase, alpha subun | 85.96 | |
| COG2912 | 269 | Uncharacterized conserved protein [Function unknow | 85.74 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 85.7 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 85.55 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.31 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 85.0 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 84.67 | |
| KOG2422 | 665 | consensus Uncharacterized conserved protein [Funct | 84.08 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.0 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.97 | |
| KOG4814 | 872 | consensus Uncharacterized conserved protein [Funct | 83.56 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 83.27 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 83.1 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 82.93 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 82.8 | |
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 82.4 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 82.25 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 82.18 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 82.08 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 81.58 | |
| KOG0546 | 372 | consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos | 80.46 | |
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 80.01 |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2e-14 Score=123.73 Aligned_cols=113 Identities=12% Similarity=-0.002 Sum_probs=103.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...|++++|..+|++++..+|.++.++.++|.++. ..|++++|+.+|++|+.++|+++.++..+|.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~- 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWM-MLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM- 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-
Confidence 5678899999999999999999999999999999999999875 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.|++++|++.|++|+++.|+++..+..++.+...+
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV 139 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999998888877654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-14 Score=130.97 Aligned_cols=136 Identities=17% Similarity=0.192 Sum_probs=123.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..-+|.-|.+.|++..|+.-+++||+.||++..++..+|.+ |+..|+.+.|.+.|++|++++|++.+|+.+||+++..
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~-Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~- 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHY-YQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA- 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHH-HHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh-
Confidence 44577789999999999999999999999999999999988 5789999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccccCCCCCCCCC
Q 020109 256 HKDASRAESYFDQAVKS--APDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHTSPPN 316 (331)
Q Consensus 256 ~Gd~deAieyferALel--dPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~~~~~~~~~~~ 316 (331)
.|++++|..+|++|+.. .|..+..+.++|.|-+++|+.+.|++.++ +-.++.+..|+.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~---raL~~dp~~~~~ 175 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLK---RALELDPQFPPA 175 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHH---HHHHhCcCCChH
Confidence 99999999999999987 35788999999999999999999998887 656666666664
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.8e-13 Score=138.68 Aligned_cols=126 Identities=17% Similarity=0.100 Sum_probs=101.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|.++..+|++++|+.+|+++|+++|+++..+..+|.++. ..|++++|+.+|++|+.++|+++.++..+|.+++
T Consensus 332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~ 410 (615)
T TIGR00990 332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 346677888888888888888888888888888888888887764 5688888888888888888888888888888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|++++|+.+|+++++++|++..++..+|.++.++|++++|...++
T Consensus 411 ~-~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 411 I-KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred H-cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7 8888888888888888888888888888888888888887776665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.9e-13 Score=137.51 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=120.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.++...+++++|+.+|+++|+.+|+++.+++.+|.+++ ..|++++|+.+|++++.++|++..++..+|.++
T Consensus 365 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 365 TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHF-IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 3445789999999999999999999999999999999999999976 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++ .|++++|+.+|+++++..|+++.++..+|.++...|++++|+..++
T Consensus 444 ~~-~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 491 (615)
T TIGR00990 444 YK-EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFD 491 (615)
T ss_pred HH-CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999998776
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=9e-13 Score=119.55 Aligned_cols=115 Identities=12% Similarity=0.141 Sum_probs=106.5
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD--ASRAE 263 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd--~deAi 263 (331)
.++.++++..++++++.+|+|++.|..+|.++ ...+++++|...|++|+.++|+++.++..+|.+++...|+ +++|+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~-~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYY-LWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 35679999999999999999999999999986 4789999999999999999999999999999986432777 59999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.++++++.+|++..++..+|..+...|++++|+..++
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999999998887
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.2e-13 Score=114.92 Aligned_cols=107 Identities=12% Similarity=0.078 Sum_probs=99.1
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
.--..+|+++|+++|++ +..+|.++. ..|++++|..+|++++.++|.++.++..+|.++.. .|++++|+..|+++
T Consensus 10 ~~~~~~~~~al~~~p~~---~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~y~~A 84 (144)
T PRK15359 10 KIPEDILKQLLSVDPET---VYASGYASW-QEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMM-LKEYTTAINFYGHA 84 (144)
T ss_pred CCHHHHHHHHHHcCHHH---HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-HhhHHHHHHHHHHH
Confidence 44578999999999986 456777765 68999999999999999999999999999999999 99999999999999
Q ss_pred HHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 270 VKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 270 LeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++++|+++.+++++|.++...|++++|+..++
T Consensus 85 l~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~ 116 (144)
T PRK15359 85 LMLDASHPEPVYQTGVCLKMMGEPGLAREAFQ 116 (144)
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999998776
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.8e-12 Score=110.70 Aligned_cols=127 Identities=20% Similarity=0.277 Sum_probs=104.4
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|..|...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|.++|++++..+|.++.++..++.++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQ-QLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3457888999999999999999999999999999999999998865 679999999999999999999988888888887
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSA--PDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeld--Pdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+.+|+++++.. +.....+..++.+++..|++++|...++
T Consensus 110 ~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (234)
T TIGR02521 110 CQ-QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLT 159 (234)
T ss_pred HH-cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77 788888877777777753 3455667777777777777777776555
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.9e-13 Score=123.96 Aligned_cols=125 Identities=22% Similarity=0.260 Sum_probs=115.4
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYAD 250 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---d~~vL~~lA~ 250 (331)
+....+|.+|.+.|+.+.|.+.|++|+.++|++.++++|||.||| .+|++++|..+|++|+. +|. -+.++.++++
T Consensus 70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC-~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC-AQGRPEEAMQQFERALA-DPAYGEPSDTLENLGL 147 (250)
T ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH-hCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHH
Confidence 445678999999999999999999999999999999999999998 68999999999999997 665 5567889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+..+ .|+++.|.++|+|+++++|+++.....++..+++.|++-+|..-++
T Consensus 148 Cal~-~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~ 197 (250)
T COG3063 148 CALK-AGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE 197 (250)
T ss_pred HHhh-cCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999986555
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-13 Score=138.58 Aligned_cols=128 Identities=13% Similarity=0.132 Sum_probs=84.6
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
.+..++|+|-.|.++|..+-|+.+|++||+++|+.++++.++|..+. ..|+..+|+.||.+||.+.|+.++++.++|.+
T Consensus 285 ~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk-d~G~V~ea~~cYnkaL~l~p~hadam~NLgni 363 (966)
T KOG4626|consen 285 HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK-DKGSVTEAVDCYNKALRLCPNHADAMNNLGNI 363 (966)
T ss_pred chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH-hccchHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 34445666666666666666666666666666666666666666664 35666666666666666666666666666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. ++.+++|..+|.+|++..|+.+.++.++|.+|.++|++++|..-++
T Consensus 364 ~~E-~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yk 412 (966)
T KOG4626|consen 364 YRE-QGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYK 412 (966)
T ss_pred HHH-hccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHH
Confidence 666 6666666666666666666666666666666666666666664433
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=107.44 Aligned_cols=101 Identities=11% Similarity=0.034 Sum_probs=52.2
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|++++..+|.++.++..+|.+++ ..+++++|..+|++++..+|.++.++..+|.+++.
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~- 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQ-MLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA- 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-
Confidence 4445555555555555555555555555555555555555433 34555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~ 278 (331)
.|++++|+.+|+++++++|++..
T Consensus 98 ~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred cCCHHHHHHHHHHHHHhccccch
Confidence 55555555555555555554443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.3e-12 Score=108.93 Aligned_cols=128 Identities=20% Similarity=0.229 Sum_probs=116.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNILSLYAD 250 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld--P~d~~vL~~lA~ 250 (331)
.....++|..|...+++++|..+|+++++.+|.++.++.+++.++. ..|++++|+++|++++... +.....+..+|.
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcccHHHHHHHHHHHHhccccccchHHHHHHHH
Confidence 3456788999999999999999999999999999999999999865 6899999999999999854 566778888999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+++. .|++++|+.+|+++++.+|++..++..++.++...|++++|...+++
T Consensus 144 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 194 (234)
T TIGR02521 144 CALK-AGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLER 194 (234)
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999977763
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.44 E-value=6e-13 Score=137.23 Aligned_cols=127 Identities=19% Similarity=0.165 Sum_probs=108.0
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
+..++|+|+.|.+++.++.|...|++|++.+|..+.+..++|.++ +.+|++++|+.+|+.||.++|..++++.++|..+
T Consensus 354 adam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~-kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 354 ADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIY-KQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHH-HhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence 445778888888888888888888888888888888888888775 4678999999999999999999999999999988
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
-. +|+.+.|+..|.+|+.++|..++++.++|.+|.+.|+..+|+.-++
T Consensus 433 ke-~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~ 480 (966)
T KOG4626|consen 433 KE-MGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYR 480 (966)
T ss_pred HH-hhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHH
Confidence 88 8999999999999999999999999999999999999988887665
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.7e-12 Score=133.69 Aligned_cols=128 Identities=11% Similarity=0.044 Sum_probs=105.0
Q ss_pred CCcccccHHHHHHh---------CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 172 GSGFSGSNNNYSNN---------NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 172 ~~~~~~N~A~~y~~---------~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~ 242 (331)
+.....++|.+|.. .+++++|+.++++|++++|+++.++..+|.++. ..|++++|+.+|++|++++|+++
T Consensus 294 ~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~ 372 (553)
T PRK12370 294 SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINT-IHSEYIVGSLLFKQANLLSPISA 372 (553)
T ss_pred cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCH
Confidence 44444555655442 234789999999999999999999998888865 67899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.++.. .|++++|+.+|+++++++|.+..++..++.+++..|++++|....+
T Consensus 373 ~a~~~lg~~l~~-~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 373 DIKYYYGWNLFM-AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 999999999988 9999999999999999999888777777777888888888887665
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.6e-12 Score=121.51 Aligned_cols=125 Identities=10% Similarity=0.059 Sum_probs=111.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|..|...|++++|+..|+++++++|+++.+++.+|.++. ..|++++|++.|++|++++|++..++..+|.+++
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~ 143 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY 143 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 457788999999999999999999999999999999999999864 7899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|++++|++.|+++++++|+++.... +..++...++.++|...++
T Consensus 144 ~-~g~~~eA~~~~~~al~~~P~~~~~~~-~~~l~~~~~~~~~A~~~l~ 189 (296)
T PRK11189 144 Y-GGRYELAQDDLLAFYQDDPNDPYRAL-WLYLAESKLDPKQAKENLK 189 (296)
T ss_pred H-CCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHccCCHHHHHHHHH
Confidence 9 99999999999999999999985322 2233455678899988775
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.9e-12 Score=132.05 Aligned_cols=129 Identities=13% Similarity=0.054 Sum_probs=118.5
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.+.....++|..+...+++++|+.+|++|++++|+++.+++.+|.++. ..|++++|+.+|++|++++|.++.+...++.
T Consensus 336 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~ 414 (553)
T PRK12370 336 NNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINECLKLDPTRAAAGITKLW 414 (553)
T ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence 455667789999999999999999999999999999999999999875 6899999999999999999999988777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeld-Pdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++. .|++++|+.+++++++.. |+++..+..+|.+|..+|++++|....+
T Consensus 415 ~~~~-~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~ 465 (553)
T PRK12370 415 ITYY-HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTK 465 (553)
T ss_pred HHHh-ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7888 899999999999999885 7899999999999999999999998776
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-12 Score=105.08 Aligned_cols=108 Identities=18% Similarity=0.094 Sum_probs=101.8
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 194 e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeld 273 (331)
+.|++++..+|++..+...+|.++. ..+++++|.++|++++..+|.++.++..+|.+++. .+++++|+.+|+++++.+
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLY-QQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQM-LKEYEEAIDAYALAAALD 81 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhcC
Confidence 4688999999999999999999875 68999999999999999999999999999999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 274 PDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 274 Pdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
|++..+++.+|.+++..|++++|...++..
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999877633
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=5.7e-12 Score=123.75 Aligned_cols=114 Identities=17% Similarity=0.142 Sum_probs=106.5
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
...|..++..++|++|+.+|++||+++|+++.+++++|.++. ..|++++|+.++++|+.++|+++.++..+|.+++. .
T Consensus 6 ~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~-~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~-l 83 (356)
T PLN03088 6 EDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANI-KLGNFTEAVADANKAIELDPSLAKAYLRKGTACMK-L 83 (356)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-h
Confidence 345778889999999999999999999999999999999975 68999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
|++++|+.+|+++++++|++..+...++.|..++.+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~ 119 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAE 119 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999777743
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.2e-12 Score=115.17 Aligned_cols=107 Identities=15% Similarity=0.127 Sum_probs=98.0
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd--yeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
+.....++|.+|...+++++|+.+|++|++++|+++.++..||.+++...|+ +++|.+.+++|++++|+++.++..+|
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA 151 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA 151 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence 4456778999999999999999999999999999999999999986556677 59999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~v 279 (331)
..++. .|++++|+.+|+++++++|.+..-
T Consensus 152 ~~~~~-~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 152 SDAFM-QADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred HHHHH-cCCHHHHHHHHHHHHhhCCCCccH
Confidence 99999 999999999999999999965533
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-12 Score=122.49 Aligned_cols=115 Identities=17% Similarity=0.164 Sum_probs=106.5
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
+=|+-+.+.++|.+|+..|.+||+++|+|+.++.+-|.++. ..|.|+.|.+-|+.||.+||+.-.+|..++.++.. +|
T Consensus 86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~-~g 163 (304)
T KOG0553|consen 86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLA-LG 163 (304)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHc-cC
Confidence 34455667899999999999999999999999999999965 68999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
++++|++.|++||+++|++..++.++-.+-.++++..
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999988888887776
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.6e-12 Score=128.32 Aligned_cols=126 Identities=21% Similarity=0.243 Sum_probs=88.9
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...|++++|+.+|+++++.+|+++.++.+++.++. ..++ .+|+.++++++.+.|+++.++..+|.++
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~-~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL-ELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 4455666667777777777777777777777777777666666643 4555 6677777777777777777777777777
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+. .|++++|+++|+++++.+|.++.++..++.+++..|++++|...++
T Consensus 848 ~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 895 (899)
T TIGR02917 848 VE-KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELD 895 (899)
T ss_pred HH-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77 7777777777777777777777777777777777777777776654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=121.53 Aligned_cols=128 Identities=24% Similarity=0.266 Sum_probs=101.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+..+..-+|.++.+.|+.++|+.+|++||+.+|+|+.++..|+.++. ..|++++|.+.+++.....|.|+.++..+|.+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 55677889999999999999999999999999999999999998864 57899999999999999889999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++. .|++++|+.+|+++++.+|+|+.++..+|.++...|+.++|....+
T Consensus 224 ~~~-lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~ 272 (280)
T PF13429_consen 224 YLQ-LGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRR 272 (280)
T ss_dssp HHH-HT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------
T ss_pred hcc-cccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999 9999999999999999999999999999999999999999986654
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=131.69 Aligned_cols=128 Identities=13% Similarity=0.016 Sum_probs=122.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
......|+|......|.+++|...++++++.+|++..++.++|.++. ..+++++|...+++++..+|+++.++..+|.+
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~ 163 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKS 163 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999987 57999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.+ .|++++|+++|+++++.+|+++.++..+|++|...|+.++|...++
T Consensus 164 l~~-~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~ 212 (694)
T PRK15179 164 WDE-IGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQ 212 (694)
T ss_pred HHH-hcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999997665
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.4e-12 Score=132.26 Aligned_cols=127 Identities=20% Similarity=0.143 Sum_probs=95.7
Q ss_pred CcccccHHHHHHhCCCcHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSS----TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ek----A~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
.....++|..|...|++++ |+.+|+++++.+|+++.++..+|.++. ..|++++|+.++++++.++|+++.++..+
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~g~~~eA~~~l~~al~l~P~~~~a~~~L 324 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALI-RTGQNEKAIPLLQQSLATHPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 4456677777777777764 677777777777777777777777754 56777777777777777777777777777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.++.. .|++++|+..|+++++.+|++..++..++.++...|++++|...++
T Consensus 325 a~~l~~-~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~ 376 (656)
T PRK15174 325 ARALRQ-VGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFE 376 (656)
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 777777 7777777777777777777777666667777777777777777665
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.4e-12 Score=134.95 Aligned_cols=126 Identities=18% Similarity=0.134 Sum_probs=95.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+.+|.-+.....+|+|+.||++||..||.+..+|+++|.++ ..+++++.|+-+|++|+++||.+-..+..++.++.+
T Consensus 458 yTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy-~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~- 535 (638)
T KOG1126|consen 458 YTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVY-LKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQ- 535 (638)
T ss_pred hhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhe-eccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHH-
Confidence 334444555556677777777777777777777777777774 367788888888888888888888888888888877
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
.|+.|+|+.+|++|+.++|.++...+..+.++..+++++||-.++||.
T Consensus 536 ~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 536 LKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred hhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 888888888888888888888888888888888888888887777643
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.7e-11 Score=129.12 Aligned_cols=123 Identities=20% Similarity=0.179 Sum_probs=116.4
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAK----AEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gdyee----Aee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.+++..|...+++++|+..|+++++.+|+++.++.++|.++. ..|++++ |+.+|++|++++|+++.++..+|.++
T Consensus 216 ~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~-~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l 294 (656)
T PRK15174 216 GLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYY-QSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADAL 294 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 456778899999999999999999999999999999999976 6799885 89999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+.+|+++++++|++..++..++.+|...|++++|...++
T Consensus 295 ~~-~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~ 342 (656)
T PRK15174 295 IR-TGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFV 342 (656)
T ss_pred HH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999998886
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.1e-12 Score=135.75 Aligned_cols=121 Identities=16% Similarity=0.151 Sum_probs=113.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
+|+||.-+++++.|+++|++||++||+.+.++..+|.=+- ...++++|..+|++||..+|.+..+|+.+|.+|.+ +++
T Consensus 427 ~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~-~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K-qek 504 (638)
T KOG1126|consen 427 LGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESI-ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK-QEK 504 (638)
T ss_pred hcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhh-hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec-cch
Confidence 4678899999999999999999999999999888885432 56899999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.|+-+|++|++++|.+..+...++.++-+.++.++|....+
T Consensus 505 ~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~ 547 (638)
T KOG1126|consen 505 LEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYE 547 (638)
T ss_pred hhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHH
Confidence 9999999999999999999999999999999999999997776
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-11 Score=132.77 Aligned_cols=120 Identities=13% Similarity=0.120 Sum_probs=105.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
++..+...|++++|+.+|+++++.+|+ +.++.++|.++. ..|++++|+.+|++|+.++|+++.++..+|.++.. .|+
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~-~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~-~G~ 658 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYR-QRHNVPAAVSDLRAALELEPNNSNYQAALGYALWD-SGD 658 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCC
Confidence 344444558999999999999999996 888889998865 68999999999999999999999999999999998 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++|+++|++|++++|+++.+++++|.++...|++++|+..++
T Consensus 659 ~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~ 701 (987)
T PRK09782 659 IAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYAR 701 (987)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999987776
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.2e-11 Score=133.60 Aligned_cols=127 Identities=13% Similarity=0.099 Sum_probs=121.3
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....|+|.++.+.|++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.++
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~-~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al 687 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALW-DSGDIAQSREMLERAHKGLPDDPALIRQLAYVN 687 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999999999875 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+.+|++|++++|+++.+...++.++....+++.+..+.+
T Consensus 688 ~~-lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~ 735 (987)
T PRK09782 688 QR-LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVG 735 (987)
T ss_pred HH-CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999998776
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.2e-11 Score=86.58 Aligned_cols=98 Identities=19% Similarity=0.187 Sum_probs=89.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|+++++..|.++.++..+|.++. ..+++++|.++|++++...|.+..++..+|.+++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~- 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYY-KLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYK- 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHH-
Confidence 4578899999999999999999999999999999999998875 57999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 020109 256 HKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 256 ~Gd~deAieyferALeldPd 275 (331)
.+++++|..++.++++..|.
T Consensus 81 ~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 81 LGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHhHHHHHHHHHHHHccCCC
Confidence 99999999999999998873
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-10 Score=119.67 Aligned_cols=125 Identities=20% Similarity=0.206 Sum_probs=114.7
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....+++.++...|++++|+..+++++..+|+++.+++.+|.++. ..|++++|.++|+++++.+|+++.++..+++++.
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~ 815 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYL-AQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYL 815 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999999999999999999998864 6899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .++ .+|+.++++++++.|+++.++..++.++...|++++|...++
T Consensus 816 ~-~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~ 861 (899)
T TIGR02917 816 E-LKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLR 861 (899)
T ss_pred h-cCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 8 888 889999999999999999999999999999999999998877
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.27 E-value=6.4e-11 Score=107.21 Aligned_cols=130 Identities=16% Similarity=0.120 Sum_probs=105.5
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---H
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---I 244 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---v 244 (331)
.....+.++|..+...+++++|+..|++++..+|+++ .+++.+|.+++ ..+++++|...|++++..+|+++. +
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYY-KSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 4445678888899999999999999999999999876 46678888865 679999999999999999998776 5
Q ss_pred HHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCchHHHhh
Q 020109 245 LSLYADLIWQAH--------KDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 245 L~~lA~ll~~~~--------Gd~deAieyferALeldPdna~vl-----------------~~lA~~L~klG~~eEa~~~ 299 (331)
+..+|.+++. . +++++|+++|+++++.+|++..++ ..+|.++++.|++++|...
T Consensus 110 ~~~~g~~~~~-~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 110 YYLRGLSNYN-QIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHHH-hcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 7778888876 5 788889999999999999876543 3567888888998888877
Q ss_pred hhh
Q 020109 300 NEE 302 (331)
Q Consensus 300 ~e~ 302 (331)
+++
T Consensus 189 ~~~ 191 (235)
T TIGR03302 189 FET 191 (235)
T ss_pred HHH
Confidence 663
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.9e-11 Score=120.01 Aligned_cols=119 Identities=18% Similarity=0.115 Sum_probs=104.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
|++|.-+++.++|+.||++||++||+...+|...|.=+.+ ..+-..|.+.|++||.++|.|..+|+.+|.+|.- ++=.
T Consensus 337 aNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvE-mKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYei-m~Mh 414 (559)
T KOG1155|consen 337 ANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVE-MKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEI-MKMH 414 (559)
T ss_pred hhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHH-hcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHH-hcch
Confidence 4677888888999999999999999999999998866444 5788889999999999999999999999999888 8888
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.=|+-||++|+++.|+|..+|..+|.||.++++.+||++=.
T Consensus 415 ~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCy 455 (559)
T KOG1155|consen 415 FYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCY 455 (559)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHH
Confidence 88999999999999999999999999999999999998644
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.2e-10 Score=103.19 Aligned_cols=97 Identities=7% Similarity=-0.084 Sum_probs=92.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.++-+|..+...|++++|+..|+.+..+||.++.+|++||.++ +..|+|.+|+.+|.+|+.++|+||....++|.+++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~-Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECC-QAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999995 678999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhC
Q 020109 255 AHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 255 ~~Gd~deAieyferALeld 273 (331)
.|+.+.|++.|+.|+..-
T Consensus 116 -lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 116 -CDNVCYAIKALKAVVRIC 133 (157)
T ss_pred -cCCHHHHHHHHHHHHHHh
Confidence 999999999999999986
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=129.08 Aligned_cols=123 Identities=15% Similarity=0.211 Sum_probs=100.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH------
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL------ 251 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l------ 251 (331)
+.+..+...+++++|+.+|+++++++|+++.++..+|.++. ..|++++|+++|++|++++|++..++..++.+
T Consensus 356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~-~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~ 434 (1157)
T PRK11447 356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAM-ARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSP 434 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCH
Confidence 34667778888888888888888888888888888888864 67888888888888888888888776555443
Q ss_pred ------------------------------------HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchH
Q 020109 252 ------------------------------------IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 252 ------------------------------------l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eE 295 (331)
+.. .|++++|+++|+++++++|+++.+++.++.+|+..|++++
T Consensus 435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~-~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~ 513 (1157)
T PRK11447 435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALEN-QGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQ 513 (1157)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence 334 6888888888888888888888888888888888888888
Q ss_pred HHhhhhh
Q 020109 296 EEQDNEE 302 (331)
Q Consensus 296 a~~~~e~ 302 (331)
|+..++.
T Consensus 514 A~~~l~~ 520 (1157)
T PRK11447 514 ADALMRR 520 (1157)
T ss_pred HHHHHHH
Confidence 8877763
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.9e-10 Score=110.58 Aligned_cols=125 Identities=10% Similarity=0.043 Sum_probs=85.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-----ILSLYAD 250 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-----vL~~lA~ 250 (331)
..++|..|...|++++|..+|+++++.+|.+..++..++.++. ..|++++|.++++++++.+|.+.. ++..+|.
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~ 188 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ 188 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence 4566777777777777777777777777777777777776653 467777777777777776665432 3445566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
++.. .+++++|+.+|+++++.+|++..++..++.++...|++++|...+++
T Consensus 189 ~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 239 (389)
T PRK11788 189 QALA-RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALER 239 (389)
T ss_pred HHHh-CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666 67777777777777777777777777777777777777777665553
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-10 Score=110.17 Aligned_cols=113 Identities=16% Similarity=0.096 Sum_probs=103.7
Q ss_pred CCcHHHHHHHHHHHHhCC---C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 187 HGSSSTDAYYEKMIEANP---G-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 187 gd~ekA~e~yekALeldP---~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
...+.++..+.++|...| . .+.+++.+|.++. ..|++++|...|++|++++|+++.++..+|.++.. .|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~-~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYD-SLGLRALARNDFSQALALRPDMADAYNYLGIYLTQ-AGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHH
Confidence 466899999999997544 3 3677889998864 68999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.|+++++++|++..++.++|.+++..|++++|...++
T Consensus 118 ~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 118 YEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999998776
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.6e-10 Score=91.00 Aligned_cols=104 Identities=11% Similarity=0.060 Sum_probs=93.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYA 249 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA 249 (331)
.++.|..+...+++++|+.+|++++..+|++ +.+++.+|.+++ ..+++++|..+|++++..+|++ +.++..+|
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYY-AQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH-hhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4577889999999999999999999999987 567888999875 6799999999999999999986 67899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
.++.. .+++++|+.+|+++++..|++..+..
T Consensus 84 ~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQE-LGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHH-hCChHHHHHHHHHHHHHCcCChhHHH
Confidence 99999 99999999999999999999886544
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=127.98 Aligned_cols=129 Identities=18% Similarity=0.250 Sum_probs=117.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH----------------------------------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL---------------------------------- 217 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lL---------------------------------- 217 (331)
+.....++|.+|...+++++|+.+|+++++.+|++..++..++.++
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~ 463 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDR 463 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence 4556778999999999999999999999999999998877666542
Q ss_pred -------HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 218 -------KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 218 -------y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
+...|++++|+++|++|++++|+++.++..+|.+++. .|++++|+.+|+++++.+|+++.+++.++.++...
T Consensus 464 ~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~-~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 464 LAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ-AGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhC
Confidence 1246899999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCchHHHhhhh
Q 020109 291 GEDEEEEQDNE 301 (331)
Q Consensus 291 G~~eEa~~~~e 301 (331)
+++++|...++
T Consensus 543 ~~~~~Al~~l~ 553 (1157)
T PRK11447 543 DRDRAALAHLN 553 (1157)
T ss_pred CCHHHHHHHHH
Confidence 99999987765
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-10 Score=121.30 Aligned_cols=125 Identities=14% Similarity=0.047 Sum_probs=117.3
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
..+.++|.++...+++++|+.+|+++|+.+|+++.++..+|.++. ..+++++|..+++++++.+|+++. +..+|.++.
T Consensus 50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~ 127 (765)
T PRK10049 50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYK 127 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Confidence 347889999999999999999999999999999999999998865 689999999999999999999999 999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|++++|+..|++++++.|++..++..++.++...+..++|...++
T Consensus 128 ~-~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 128 R-AGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred H-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 9 9999999999999999999999999999999999999988876654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.1e-10 Score=108.32 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=108.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIW 253 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d-~~vL~~lA~ll~ 253 (331)
+..++|..+...+++++|+.+|+++++.+|++..++..+|.++. ..|++++|.++|++++..+|.+ ..++..++.++.
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~ 260 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLAL-AQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQ 260 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHH
Confidence 34578888889999999999999999999999999899998864 6899999999999999998876 456778888888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
. .|++++|+.+++++++..|+... +..++.++.+.|++++|...+++
T Consensus 261 ~-~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~ 307 (389)
T PRK11788 261 A-LGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLRE 307 (389)
T ss_pred H-cCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHH
Confidence 8 99999999999999999997654 48899999999999999987763
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.8e-10 Score=103.06 Aligned_cols=126 Identities=13% Similarity=0.003 Sum_probs=109.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEV-------RGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe---al~~yA~lLy~~-------~GdyeeAee~~erAL~ldP~d~~v 244 (331)
...++|.+|...+++++|+..|+++++.+|+++. +++.++.+++.. .+++++|.+.|++++..+|++..+
T Consensus 72 a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 72 AQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 4578899999999999999999999999999887 577788876532 278999999999999999999765
Q ss_pred H-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 245 L-----------------SLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 245 L-----------------~~lA~ll~~~~Gd~deAieyferALeldPdn---a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. ..+|.+++. .|++.+|+..|+++++..|+. ..+++.++.++..+|++++|....+
T Consensus 152 ~~a~~~~~~~~~~~~~~~~~~a~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 152 PDAKKRMDYLRNRLAGKELYVARFYLK-RGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAA 227 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-cCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3 245777888 999999999999999997754 5899999999999999999997665
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-10 Score=109.10 Aligned_cols=129 Identities=22% Similarity=0.186 Sum_probs=103.7
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEAN--PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeld--P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
++...+..+...+...++++++...++++.... +.++.++..+|.++. ..|+.++|+++|++|+.++|+|+.++..+
T Consensus 108 ~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~-~~G~~~~A~~~~~~al~~~P~~~~~~~~l 186 (280)
T PF13429_consen 108 GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE-QLGDPDKALRDYRKALELDPDDPDARNAL 186 (280)
T ss_dssp ----------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH-HCCHHHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 355666778889999999999999999988766 678999999999964 78999999999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++++. .|+++++.+.+++..+..|.++.++..+|.++..+|++++|...++
T Consensus 187 ~~~li~-~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~ 238 (280)
T PF13429_consen 187 AWLLID-MGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLE 238 (280)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHH-CCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccc
Confidence 999999 9999999999999999999999999999999999999999998776
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.9e-10 Score=112.32 Aligned_cols=123 Identities=12% Similarity=0.070 Sum_probs=116.8
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
...+.+|.-|.++++...|+..|++|+.++|.|-.+|+++|+.+ ...+-..=|+-||++|++.-|+|+.+|..+|.+|.
T Consensus 365 ~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaY-eim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 365 SAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAY-EIMKMHFYALYYFQKALELKPNDSRLWVALGECYE 443 (559)
T ss_pred HHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHH-HHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999994 67888999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+ .++.++|++.|.+|+...-.+..++..+|.+|.+.++.++|..
T Consensus 444 k-l~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~ 487 (559)
T KOG1155|consen 444 K-LNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQ 487 (559)
T ss_pred H-hccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 9 9999999999999999999999999999999999999999984
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.5e-09 Score=95.23 Aligned_cols=116 Identities=18% Similarity=0.243 Sum_probs=97.0
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
......++|..|...+++++|+.+|++++..+|+. +.++.++|.++. ..|++++|+.+|++|+..+|+++..+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYA-SNGEHDKALEYYHQALELNPKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 44567889999999999999999999999987764 467888998865 68999999999999999999999999999
Q ss_pred HHHHHHHcCC--------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 249 ADLIWQAHKD--------------ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 249 A~ll~~~~Gd--------------~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
|.++.. .++ +++|+++++++++.+|++. ......+..+|+
T Consensus 113 g~~~~~-~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~---~~~~~~~~~~~~ 166 (172)
T PRK02603 113 AVIYHK-RGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY---IEAQNWLKTTGR 166 (172)
T ss_pred HHHHHH-cCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH---HHHHHHHHhcCc
Confidence 999988 777 6889999999999999873 344444555544
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.6e-10 Score=83.97 Aligned_cols=68 Identities=24% Similarity=0.243 Sum_probs=58.9
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 020109 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK-DASRAESYFDQAVKSAP 274 (331)
Q Consensus 205 ~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G-d~deAieyferALeldP 274 (331)
+++.++..+|.+++ ..+++++|+.+|++||+++|+++.++..+|.+++. .+ ++++|+++|+++++++|
T Consensus 1 e~a~~~~~~g~~~~-~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~-~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 1 ENAEAWYNLGQIYF-QQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMK-LGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp TSHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHH-TTTHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hCccHHHHHHHHHHHHHcCc
Confidence 36778888888865 57899999999999999999999999999999888 88 68999999999999887
|
... |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=9.6e-10 Score=97.38 Aligned_cols=100 Identities=13% Similarity=-0.024 Sum_probs=92.9
Q ss_pred HHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 200 IEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 200 Leld-P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
..+. ++.-+.++.||..++ ..|++++|+.+|+-++.+||.++..+..+|.++.. +|++.+|+..|.+|+.++|+++.
T Consensus 27 ~~~~~~~~l~~lY~~A~~ly-~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~-~g~~~~AI~aY~~A~~L~~ddp~ 104 (157)
T PRK15363 27 LDDDVTQPLNTLYRYAMQLM-EVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQA-QKHWGEAIYAYGRAAQIKIDAPQ 104 (157)
T ss_pred HCCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCch
Confidence 3456 677788899999887 58999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHcCCchHHHhhhh
Q 020109 279 VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 279 vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+++.|.|+...|+.+.|.+-++
T Consensus 105 ~~~~ag~c~L~lG~~~~A~~aF~ 127 (157)
T PRK15363 105 APWAAAECYLACDNVCYAIKALK 127 (157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999987665
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.2e-09 Score=101.35 Aligned_cols=124 Identities=17% Similarity=0.103 Sum_probs=116.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
++.-+++.....|+|..|+..++++...+|+|.+++..+|.++- ..|+.+.|..-|.+|+++.|+++.++.++|..+.-
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaald-q~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L 180 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALD-QLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL 180 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHH-HccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH
Confidence 34448889999999999999999999999999999999999964 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.||++.|..++..+...-+.+..+..+++.+.-..|++++|+.+-
T Consensus 181 -~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 181 -RGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred -cCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 999999999999999999999999999999999999999998543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.08 E-value=6.1e-10 Score=112.85 Aligned_cols=131 Identities=21% Similarity=0.168 Sum_probs=95.4
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------------------------------
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV------------------------------ 220 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~------------------------------ 220 (331)
.|+..-+..|..++-.++|+.|++-|++++.++|++...+..++.++|+.
T Consensus 392 ~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAei 471 (606)
T KOG0547|consen 392 ENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEI 471 (606)
T ss_pred CCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence 78889999999999999999999999999999999999888888777742
Q ss_pred ---cCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 221 ---RGDFAKAEELCGRAILANPS------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 221 ---~GdyeeAee~~erAL~ldP~------d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
++++++|+++|++|+.+.|. ++..+..-|.+.+++.+++++|+.++.+|+++||..-.++..+|.+..++|
T Consensus 472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~ 551 (606)
T KOG0547|consen 472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRG 551 (606)
T ss_pred HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHh
Confidence 24555555555555555555 555555555555555566666666666666666666667777777777777
Q ss_pred CchHHHhhhh
Q 020109 292 EDEEEEQDNE 301 (331)
Q Consensus 292 ~~eEa~~~~e 301 (331)
+-++|+...+
T Consensus 552 ~i~eAielFE 561 (606)
T KOG0547|consen 552 KIDEAIELFE 561 (606)
T ss_pred hHHHHHHHHH
Confidence 7777775444
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.5e-09 Score=90.98 Aligned_cols=103 Identities=18% Similarity=0.166 Sum_probs=84.2
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
.....++|.++..++++++|..+|++++.+.|+. +.++.++|.++. ..|++++|+.+|++|+.++|.+...+..+|
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~-~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT-SNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 4456788899999999999999999999887763 457888888864 689999999999999999999999988888
Q ss_pred HHHH-------HHcCCHH-------HHHHHHHHHHHhCCCCH
Q 020109 250 DLIW-------QAHKDAS-------RAESYFDQAVKSAPDDC 277 (331)
Q Consensus 250 ~ll~-------~~~Gd~d-------eAieyferALeldPdna 277 (331)
.+++ . .|+++ +|+.+|++++..+|++.
T Consensus 114 ~i~~~~~~~~~~-~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 114 VICHYRGEQAIE-QGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHhhHHHHH-cccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 8888 6 67766 66666667888888554
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=105.99 Aligned_cols=126 Identities=16% Similarity=0.080 Sum_probs=110.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH--HHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALL----LGNYARFLKEVRGDFAKAEELCGRAILANPSDG--NIL 245 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npea----l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~--~vL 245 (331)
+..+...++..+...|++++|...++++++.+|++... +..+..+ ..++..++++.++++++.+|+|+ .++
T Consensus 262 ~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l---~~~~~~~~~~~~e~~lk~~p~~~~~~ll 338 (409)
T TIGR00540 262 NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRL---KPEDNEKLEKLIEKQAKNVDDKPKCCIN 338 (409)
T ss_pred CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhc---CCCChHHHHHHHHHHHHhCCCChhHHHH
Confidence 56778899999999999999999999999999998753 2222222 35788999999999999999999 999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 246 SLYADLIWQAHKDASRAESYFD--QAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyfe--rALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
..||+++++ .|++++|.++|+ ++++..|++.. +..++.++++.|+.++|...+++
T Consensus 339 ~sLg~l~~~-~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~ 395 (409)
T TIGR00540 339 RALGQLLMK-HGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQD 395 (409)
T ss_pred HHHHHHHHH-cccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999999 999999999999 68888896665 66999999999999999988874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.3e-09 Score=113.53 Aligned_cols=126 Identities=13% Similarity=0.014 Sum_probs=112.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n---------------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
..+++..+.+.+++++|+.++++++..+|.. ..++..+|.++. ..|++++|++++++++...|+
T Consensus 313 ~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~-~~g~~~eA~~~l~~al~~~P~ 391 (765)
T PRK10049 313 LADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAK-YSNDLPQAEMRARELAYNAPG 391 (765)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCC
Confidence 4566777889999999999999999998732 345667787764 689999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
++.++..+|.++.. .|++++|++.|+++++++|++..+++.++.++..++++++|+...+..
T Consensus 392 n~~l~~~lA~l~~~-~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~l 453 (765)
T PRK10049 392 NQGLRIDYASVLQA-RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDV 453 (765)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999999999999999776543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.7e-09 Score=109.74 Aligned_cols=121 Identities=13% Similarity=0.147 Sum_probs=113.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
+|..|...++.++-..+|.+|..+||+|+.+++.-|++.+ ..++|++|..-|++|+.++|++++.+..++.++++ +++
T Consensus 366 ~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~f-lL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr-~~k 443 (606)
T KOG0547|consen 366 RAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRF-LLQQYEEAIADFQKAISLDPENAYAYIQLCCALYR-QHK 443 (606)
T ss_pred HHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHH-HHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHH-HHH
Confidence 5677888889999999999999999999999999999976 67999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++++..|+.+.+..|+-+.++..+|.+|.++++++.|++.+.
T Consensus 444 ~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD 486 (606)
T KOG0547|consen 444 IAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYD 486 (606)
T ss_pred HHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999996443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.01 E-value=7.5e-09 Score=100.91 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=85.6
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH-
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA- 259 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G-dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~- 259 (331)
++...+.+++|+..+.++|+++|++..+|...+.++.. .+ ++++|+.+++++++.+|++..++...++++.. .++.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~-L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~-l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEA-LDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEK-LGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-cchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHH-cCchh
Confidence 45555677788888888888888877777777777653 34 56777777777777777777777777777766 6653
Q ss_pred -HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 260 -SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 260 -deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++++++++++++.+|.|..+|...+.++...+++++|...++
T Consensus 124 ~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 124 ANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 567777777777777777777777777777777777765444
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.9e-09 Score=105.02 Aligned_cols=125 Identities=14% Similarity=0.062 Sum_probs=115.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
..+..|..+...++++.|...++..|...|+|+.++...+.++. ..++..+|.+.+++|+.++|+.+.+..+||.++++
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~-~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILL-EANKAKEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 34557888889999999999999999999999999999898865 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++.+|+.++++.+..+|+++..|..++..|..+|+..++..-.-
T Consensus 387 -~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 387 -GGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred -cCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence 9999999999999999999999999999999999999888875443
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.5e-09 Score=75.39 Aligned_cols=91 Identities=19% Similarity=0.246 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
+++.+|.+++ ..+++++|..+++++++..|.+..++..+|.+++. .+++++|+.+|+++++..|.+..++..++.++.
T Consensus 2 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYY-KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYK-LGKYEEALEDYEKALELDPDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHH-HHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHH
Confidence 4667888765 57999999999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HcCCchHHHhhhh
Q 020109 289 DAGEDEEEEQDNE 301 (331)
Q Consensus 289 klG~~eEa~~~~e 301 (331)
..+++++|....+
T Consensus 80 ~~~~~~~a~~~~~ 92 (100)
T cd00189 80 KLGKYEEALEAYE 92 (100)
T ss_pred HHHhHHHHHHHHH
Confidence 9999999987665
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.9e-09 Score=107.64 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=104.5
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
+-|+.+++.++|..|+.+|.+||..+|+|+.++.|.|.++ ...+++..|+..++++++++|+....+..-|.+++. +.
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~-~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~-mk 440 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY-LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRA-MK 440 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH-HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HH
Confidence 3467788899999999999999999999999999999885 478999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
+|++|++.|..+++++|.+..+...+.+|+..+
T Consensus 441 ~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 441 EYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999865
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.9e-09 Score=98.05 Aligned_cols=123 Identities=20% Similarity=0.135 Sum_probs=116.6
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
.|++..|...|+-+.+..+..+++..+|.+.+.+..++..+. ..|++.+|+..+++|..++|+|..++..+|.+|-+ .
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~-~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq-~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQI-RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQ-L 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHH-HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHH-c
Confidence 789999999999999999999999999999999988888765 68999999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|++++|..-|.||+++.|+++.+..+++..|+-.|+++.|+..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll 192 (257)
T COG5010 148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLL 192 (257)
T ss_pred cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999997654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.98 E-value=9.1e-09 Score=109.81 Aligned_cols=124 Identities=18% Similarity=0.191 Sum_probs=117.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+-..|+.++.+|++++|...+..+|..+|.++.+++.+|.+ |+.+||.++|..++-.|--++|+|...|..++....+
T Consensus 142 ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~I-yEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~- 219 (895)
T KOG2076|consen 142 LLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEI-YEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ- 219 (895)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHH-HHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh-
Confidence 34578899999999999999999999999999999999999 5789999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++++|+-+|.+||+.+|.+-...+.++.+|.+.|+...|....+
T Consensus 220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~ 265 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFL 265 (895)
T ss_pred cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHH
Confidence 9999999999999999999999999999999999999988886665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.4e-09 Score=84.49 Aligned_cols=81 Identities=26% Similarity=0.361 Sum_probs=61.1
Q ss_pred CCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
+++++.|+.+|+++++.+|. +..+++.+|.+++ ..|+|++|.+++++ +..+|.++.++..+|.++++ .|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~-~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~-l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYF-QQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLK-LGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHH-HTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHH-TT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHH-HCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHH-hCCHHHHH
Confidence 46778888888888888884 4556666787776 57888888888888 77777777777788888888 88888888
Q ss_pred HHHHHH
Q 020109 264 SYFDQA 269 (331)
Q Consensus 264 eyferA 269 (331)
++|++|
T Consensus 79 ~~l~~~ 84 (84)
T PF12895_consen 79 KALEKA 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 888765
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.4e-09 Score=80.16 Aligned_cols=56 Identities=21% Similarity=0.462 Sum_probs=29.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn 276 (331)
..|++++|+.+|++++..+|+++.++..+|.+++. .|++++|+.+|+++++++|++
T Consensus 9 ~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 9 QQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQ-QGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT-
T ss_pred HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCC
Confidence 34555555555555555555555555555555555 555555555555555555544
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.3e-09 Score=79.04 Aligned_cols=64 Identities=17% Similarity=0.207 Sum_probs=59.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~ 242 (331)
.+|..+...|++++|+.+|+++++.+|+++.+++.+|.+++ ..|++++|..+|++++.++|++|
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILY-QQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-H
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999999999999999999999999999976 78999999999999999999986
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.6e-09 Score=80.55 Aligned_cols=67 Identities=22% Similarity=0.190 Sum_probs=61.5
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANP 239 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G-dyeeAee~~erAL~ldP 239 (331)
++....++|..+...+++++|+.+|.++|+.+|+++.+++++|.++. ..+ ++.+|+++|++|++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~-~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYM-KLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHH-HTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhCccHHHHHHHHHHHHHcCc
Confidence 34456789999999999999999999999999999999999999975 678 79999999999999998
|
... |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.1e-09 Score=110.36 Aligned_cols=108 Identities=13% Similarity=0.157 Sum_probs=102.3
Q ss_pred cHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yekALeldP--~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
+..-.++|..|-..+| -+|++...|+.+++ +.++|++|..||+.||+.+|+|...|..||-.+.. ..+.++|+..|
T Consensus 410 l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~-ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN-~~~s~EAIsAY 487 (579)
T KOG1125|consen 410 LAHIQELFLEAARQLPTKIDPDVQSGLGVLYN-LSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN-GNRSEEAISAY 487 (579)
T ss_pred HHHHHHHHHHHHHhCCCCCChhHHhhhHHHHh-cchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC-CcccHHHHHHH
Confidence 4567888999999999 79999999999977 78999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 267 DQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 267 erALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
.||+++.|....++|++|..++.+|.|.||.+
T Consensus 488 ~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 488 NRALQLQPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred HHHHhcCCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 99999999999999999999999999999995
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-08 Score=97.41 Aligned_cols=114 Identities=18% Similarity=0.157 Sum_probs=87.0
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH--KDASRAESY 265 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~--Gd~deAiey 265 (331)
..+..+.-.+.-|+.||+|.+-|..+|.++ ...+++..|..-|.+|+++.|+|++++..||.+++... ..-.+|..+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~egW~~Lg~~y-m~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAEGWDLLGRAY-MALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCchhHHHHHHHH-HHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 457777777778888888888888888774 46788888888888888888888888888887775523 334566788
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 266 FDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 266 ferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
|++++++||++..+++.+|..+...|++.+|...++.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 8888888888888888888888888888888877773
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.5e-08 Score=109.69 Aligned_cols=125 Identities=11% Similarity=0.047 Sum_probs=106.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
..+..+....++|+++.|...|+++++.+|+++.....++.++. ..|++++|+.++++++.-+|.....+..+|.++..
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~-~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~ 114 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAG-WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRN 114 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHH-HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 45778889999999999999999999999999755457777754 57999999999999993333444444444779888
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|++++|+++|+++++.+|+++.++..++.++.+.++.++|....+
T Consensus 115 -~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~ 160 (822)
T PRK14574 115 -EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQAT 160 (822)
T ss_pred -cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998877
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.1e-08 Score=96.62 Aligned_cols=113 Identities=10% Similarity=-0.015 Sum_probs=101.0
Q ss_pred cccHHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD--FAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 176 ~~N~A~~y~~~g-d~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd--yeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
-.+.+.++...+ ++++|+.+++++++.+|++..+|...+.++. ..++ ++++..+++++|+++|+|..++...++++
T Consensus 74 W~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~-~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l 152 (320)
T PLN02789 74 WHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAE-KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVL 152 (320)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHH-HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 345566777777 5799999999999999999999998887764 4555 37889999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.. .+++++|+++++++|+.+|.|..+|.+++.++...
T Consensus 153 ~~-l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 153 RT-LGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HH-hhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 99 99999999999999999999999999999998776
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.91 E-value=4.4e-08 Score=98.25 Aligned_cols=125 Identities=19% Similarity=0.189 Sum_probs=110.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
|-.+...+-+++...+.++.|+..|++..+.+|+ +...+|.++. ..++..+|.+++.++|+.+|.+...+...|.+
T Consensus 168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEF 243 (395)
T ss_pred chHHHHHHHHHHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3344445567888889999999999999999875 4555787754 57889999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. .++++.|++..++|+++.|++...|+.++.+|..+|++++|...+.
T Consensus 244 Ll~-k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 244 LLS-KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHh-cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 999 9999999999999999999999999999999999999999986654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.4e-08 Score=108.27 Aligned_cols=109 Identities=15% Similarity=0.013 Sum_probs=101.2
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.+...+.|+|..+.+++++++|...+++++..+|+++.+++.+|.++. ..|+|++|+.+|++++..+|+++.++..+|.
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~-~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~ 196 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD-EIGQSEQADACFERLSRQHPEFENGYVGWAQ 196 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HhcchHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 356678999999999999999999999999999999999999999975 6899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
++.. .|+.++|...|++|++...+-...+.
T Consensus 197 ~l~~-~G~~~~A~~~~~~a~~~~~~~~~~~~ 226 (694)
T PRK15179 197 SLTR-RGALWRARDVLQAGLDAIGDGARKLT 226 (694)
T ss_pred HHHH-cCCHHHHHHHHHHHHHhhCcchHHHH
Confidence 9999 99999999999999999876665543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.5e-08 Score=95.94 Aligned_cols=112 Identities=20% Similarity=0.094 Sum_probs=98.7
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G--dyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
++...-.-+|..|...+++..|...|++|+++.|+|++++..||.+++...+ .-.+|.+.+++|+..||+|+.++++|
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL 233 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL 233 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence 5555556689999999999999999999999999999999999988875554 44779999999999999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
|..+++ .|+|.+|+..++..++..|.+..-...+
T Consensus 234 A~~afe-~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 234 AFAAFE-QGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHH-cccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 999999 9999999999999999998665443333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-08 Score=99.36 Aligned_cols=89 Identities=18% Similarity=0.119 Sum_probs=81.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 211 ~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
...|..++ ..++|++|+++|++||.++|+++.++..+|.++.. .|++++|+.++++|++++|+++.+++.+|.+|..+
T Consensus 6 ~~~a~~a~-~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~-~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 6 EDKAKEAF-VDDDFALAVDLYTQAIDLDPNNAELYADRAQANIK-LGNFTEAVADANKAIELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence 34455554 57999999999999999999999999999999999 99999999999999999999999999999999999
Q ss_pred CCchHHHhhhh
Q 020109 291 GEDEEEEQDNE 301 (331)
Q Consensus 291 G~~eEa~~~~e 301 (331)
|++++|...++
T Consensus 84 g~~~eA~~~~~ 94 (356)
T PLN03088 84 EEYQTAKAALE 94 (356)
T ss_pred CCHHHHHHHHH
Confidence 99999996554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.2e-08 Score=95.31 Aligned_cols=126 Identities=17% Similarity=0.115 Sum_probs=101.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHH-------------------------------------HHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLG-------------------------------------NYARFLK 218 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~-------------------------------------~yA~lLy 218 (331)
....+..+...+++++|..+++++++.+|++..++. .+|.+ +
T Consensus 46 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~-~ 124 (355)
T cd05804 46 AHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFG-L 124 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHH-H
Confidence 345677788889999999999999999998886543 11112 2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCch
Q 020109 219 EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGEDE 294 (331)
Q Consensus 219 ~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna----~vl~~lA~~L~klG~~e 294 (331)
...|++++|++.++++++++|+++.++..+|.+++. .|++++|+.+++++++..|.+. ..+..++.++...|+++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~-~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~ 203 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEM-QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYE 203 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHH
Confidence 346889999999999999999999999999999998 9999999999999999887433 24567899999999999
Q ss_pred HHHhhhhhc
Q 020109 295 EEEQDNEEG 303 (331)
Q Consensus 295 Ea~~~~e~~ 303 (331)
+|...+++.
T Consensus 204 ~A~~~~~~~ 212 (355)
T cd05804 204 AALAIYDTH 212 (355)
T ss_pred HHHHHHHHH
Confidence 999888743
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.5e-08 Score=93.09 Aligned_cols=108 Identities=8% Similarity=0.083 Sum_probs=94.5
Q ss_pred CCcccccHHHHH-HhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 020109 172 GSGFSGSNNNYS-NNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNI 244 (331)
Q Consensus 172 ~~~~~~N~A~~y-~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---d~~v 244 (331)
.....++.|..+ .+.++|++|+..|++.+...|++ +.+++.+|.+++ ..|++++|..+|++++...|+ .+++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~-~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNY-NKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 445567788876 56789999999999999999998 579999999976 689999999999999998887 5777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
+..+|.++.. .|++++|+.+|+++++..|+...+..
T Consensus 220 l~klg~~~~~-~g~~~~A~~~~~~vi~~yP~s~~a~~ 255 (263)
T PRK10803 220 MFKVGVIMQD-KGDTAKAKAVYQQVIKKYPGTDGAKQ 255 (263)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence 8888999999 99999999999999999998885533
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.9e-08 Score=78.31 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVL 280 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn---a~vl 280 (331)
+..++..|..+. ..+++++|.++|++++..+|++ +.++..+|.+++. .+++++|+.+|+++++..|++ ..++
T Consensus 2 ~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~ 79 (119)
T TIGR02795 2 EEAYYDAALLVL-KAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYA-QGKYADAAKAFLAVVKKYPKSPKAPDAL 79 (119)
T ss_pred cHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHh-hccHHHHHHHHHHHHHHCCCCCcccHHH
Confidence 456778888865 6899999999999999999987 5688899999999 999999999999999999875 6789
Q ss_pred HHHHHHHHHcCCchHHHhhhh
Q 020109 281 ASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 281 ~~lA~~L~klG~~eEa~~~~e 301 (331)
+.++.++...+++++|...++
T Consensus 80 ~~~~~~~~~~~~~~~A~~~~~ 100 (119)
T TIGR02795 80 LKLGMSLQELGDKEKAKATLQ 100 (119)
T ss_pred HHHHHHHHHhCChHHHHHHHH
Confidence 999999999999999998776
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.9e-09 Score=106.60 Aligned_cols=123 Identities=11% Similarity=0.012 Sum_probs=107.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
..-.-+|.+|...++|++|+.||+.||..+|+|...|+.||..+. ...+..+|+..|.||+++-|....+++++|..++
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLA-N~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLA-NGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhc-CCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 345567788888999999999999999999999999999999876 5678899999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCC-----C-----HHHHHHHHHHHHHcCCchHHHh
Q 020109 254 QAHKDASRAESYFDQAVKSAPD-----D-----CYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPd-----n-----a~vl~~lA~~L~klG~~eEa~~ 298 (331)
. .|.|++|.++|-.||.+.+. . -.+|..+=.++...++.+-+..
T Consensus 510 N-lG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 510 N-LGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred h-hhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 9 99999999999999999764 1 2477777777777787775543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.88 E-value=3e-08 Score=86.37 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=95.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGN--ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~n--peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---d~~vL~~lA~ll~~~~Gd~d 260 (331)
..++..+...+.+.++.++.+ ..++..+|.++ ...+++++|+.+|++|+.+.|+ .+.++..+|.++.. .|+++
T Consensus 12 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~-~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~-~g~~~ 89 (168)
T CHL00033 12 DKTFTIVADILLRILPTTSGEKEAFTYYRDGMSA-QSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTS-NGEHT 89 (168)
T ss_pred ccccccchhhhhHhccCCchhHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHH-cCCHH
Confidence 356788888887777777776 55567778775 4689999999999999999776 34689999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHH-------HcCCchHHHhhhh
Q 020109 261 RAESYFDQAVKSAPDDCYVLASYAKFLW-------DAGEDEEEEQDNE 301 (331)
Q Consensus 261 eAieyferALeldPdna~vl~~lA~~L~-------klG~~eEa~~~~e 301 (331)
+|+++|++|++++|.....+..++.++. .+|++++|...++
T Consensus 90 eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 90 KALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHH
Confidence 9999999999999999999999999999 7778776665443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.1e-08 Score=100.37 Aligned_cols=113 Identities=15% Similarity=0.047 Sum_probs=102.4
Q ss_pred CcHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 188 GSSSTDAYYEKMI---EANPGNALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 188 d~ekA~e~yekAL---eldP~npeal~~yA~lLy~~--------~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
..+.|..+|.+|+ ++||..+.++..+|.+++.. ..+..+|.++.++|+++||+|+.++..+|.+++. .
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~-~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGL-S 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-h
Confidence 4578999999999 99999999999999776433 2355779999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++++.|+..|+||+.++|+.+.+|+.+|.++.-.|+.++|....+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999987665
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=5.1e-08 Score=100.78 Aligned_cols=124 Identities=9% Similarity=-0.033 Sum_probs=102.2
Q ss_pred cccHHHHHHhCC---CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHh--CCCCHH
Q 020109 176 SGSNNNYSNNNH---GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-------GDFAKAEELCGRAILA--NPSDGN 243 (331)
Q Consensus 176 ~~N~A~~y~~~g---d~ekA~e~yekALeldP~npeal~~yA~lLy~~~-------GdyeeAee~~erAL~l--dP~d~~ 243 (331)
.+-.|..|.... ++.+|+.+|++|+++||+++.++..++.++.... .+..+|.+..++++.+ +|.++.
T Consensus 342 ~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~~ 421 (517)
T PRK10153 342 LFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLPR 421 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCChH
Confidence 444555555443 3789999999999999999999998876543221 2345677778887774 888999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++..+|..... .|++++|+.+|++|++++| +...|..+|.++...|+.++|+..++
T Consensus 422 ~~~ala~~~~~-~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 422 IYEILAVQALV-KGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999888 9999999999999999999 58899999999999999999998776
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-08 Score=98.12 Aligned_cols=117 Identities=18% Similarity=0.137 Sum_probs=101.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCC----CC-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANP----GN-----------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP----~n-----------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~ 243 (331)
-|+.|++.++|..|+.-|++|+..=+ .+ ...+.|+|.++ ...++|.+|++++.++|..+|+|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~-lKl~~~~~Ai~~c~kvLe~~~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACY-LKLKEYKEAIESCNKVLELDPNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHH-HhhhhHHHHHHHHHHHHhcCCCchh
Confidence 35688899999999999999988633 11 12356777774 4689999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
+|+.-|.++.. .++|+.|+..|++|++++|+|-.+...+..|..+..++.+.+
T Consensus 293 ALyRrG~A~l~-~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~ke 345 (397)
T KOG0543|consen 293 ALYRRGQALLA-LGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKE 345 (397)
T ss_pred HHHHHHHHHHh-hccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999999999998887766665
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=6e-09 Score=80.96 Aligned_cols=79 Identities=19% Similarity=0.259 Sum_probs=71.1
Q ss_pred cCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 221 RGDFAKAEELCGRAILANPS--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~--d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
.++|++|+.+|++++..+|. +..++..+|.++++ .|++++|+.++++ ++.+|.+...++.+|.|+.++|++++|+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~-~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQ-QGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHH-TTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHH-CCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58999999999999999995 56677778999999 9999999999999 88999999999999999999999999998
Q ss_pred hhh
Q 020109 299 DNE 301 (331)
Q Consensus 299 ~~e 301 (331)
.++
T Consensus 80 ~l~ 82 (84)
T PF12895_consen 80 ALE 82 (84)
T ss_dssp HHH
T ss_pred HHh
Confidence 775
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=8.4e-08 Score=95.21 Aligned_cols=126 Identities=15% Similarity=0.100 Sum_probs=111.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+......||..+...|+.++|...++++++ .|.++.....|+.+ ..++.++|.+.+++.++..|+|+..+..+|.+
T Consensus 262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~-~~~~~~l~~l~~~l---~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl 337 (398)
T PRK10747 262 QVALQVAMAEHLIECDDHDTAQQIILDGLK-RQYDERLVLLIPRL---KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQL 337 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh-cCCCHHHHHHHhhc---cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 344667789999999999999999999999 55577776777766 24899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+.. .+++++|.++|+++++..|++.. +..++.++...|+.++|...++++
T Consensus 338 ~~~-~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 338 LMK-HGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHH-CCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999 99999999999999999997654 568999999999999998777644
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.81 E-value=4.8e-08 Score=93.05 Aligned_cols=99 Identities=13% Similarity=0.074 Sum_probs=88.5
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN----ILSLYA 249 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~----vL~~lA 249 (331)
....++|..+..+|++++|...|+++++++|+++.++..+|.+++ ..|++++|+.++++++...|.++. .+..+|
T Consensus 115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la 193 (355)
T cd05804 115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA 193 (355)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence 445678889999999999999999999999999999999999987 589999999999999999886543 345789
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldP 274 (331)
.++.. .|++++|+.+|++++...|
T Consensus 194 ~~~~~-~G~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 194 LFYLE-RGDYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHH-CCCHHHHHHHHHHHhcccc
Confidence 99999 9999999999999988877
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.81 E-value=1.3e-08 Score=75.26 Aligned_cols=63 Identities=24% Similarity=0.280 Sum_probs=31.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
.|++++|+.+|++++..+|+++.++..+|.++. ..|++++|.+++++++..+|+++.++..+|
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a 66 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYL-KQGQYDEAEELLERLLKQDPDNPEYQQLLA 66 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHH-HTT-HHHHHHHHHCCHGGGTTHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCHHHHHHHHh
Confidence 444555555555555555555555555555533 345555555555555555555544444443
|
... |
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.1e-07 Score=103.14 Aligned_cols=124 Identities=15% Similarity=0.024 Sum_probs=110.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.+..+|..|..++++++|++.|+++++.+|+++.++..++.++. ..++.++|++.+++++..+|.+... ..++.++..
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~-~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~ 181 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQA-DAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRA 181 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHh-hcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHh
Confidence 34455789999999999999999999999999999998877754 6799999999999999999998777 556777776
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|++.|+++++.+|++..++..+...+.+.|-...|....+
T Consensus 182 -~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~ 227 (822)
T PRK14574 182 -TDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAK 227 (822)
T ss_pred -cchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 7888789999999999999999999999999999999988886554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=7e-08 Score=86.14 Aligned_cols=110 Identities=14% Similarity=0.063 Sum_probs=97.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+-+|.-+...|++++|...|+-....||.|+.++.+||.++ +..++|++|+.+|..|..++++||...+..|.+++.
T Consensus 40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~-Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~- 117 (165)
T PRK15331 40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVC-QLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL- 117 (165)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH-
Confidence 566788889999999999999999999999999999999995 688999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
.|+.+.|+..|+.+++ .|.+..+.......+-
T Consensus 118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~ 149 (165)
T PRK15331 118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLE 149 (165)
T ss_pred hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHH
Confidence 9999999999999999 5776665544444333
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.1e-08 Score=84.21 Aligned_cols=98 Identities=20% Similarity=0.227 Sum_probs=82.8
Q ss_pred HHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 196 YEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 196 yekALeldP--~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAieyferAL 270 (331)
+...+..++ ..+.+++.+|.++. ..|++++|..+|++|+.+.|+. ..++..+|.++.. .|++++|+.+|++++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al 99 (172)
T PRK02603 22 ILKILPINKKAKEAFVYYRDGMSAQ-ADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYAS-NGEHDKALEYYHQAL 99 (172)
T ss_pred HHHHcccccHhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 344444444 45667788888864 6899999999999999988764 4688999999999 999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCchH
Q 020109 271 KSAPDDCYVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 271 eldPdna~vl~~lA~~L~klG~~eE 295 (331)
+..|++...+..++.++...++...
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~~~ 124 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEKAE 124 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCChHh
Confidence 9999999999999999999888433
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.4e-08 Score=100.93 Aligned_cols=125 Identities=15% Similarity=0.138 Sum_probs=115.6
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
=|+..+.|-++.-+.+|++++|.+.|+.||..|....+++++++... +.+|+.++|+.+|-++-.+=-++..|++.+|.
T Consensus 488 yn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~-e~~~~ldeald~f~klh~il~nn~evl~qian 566 (840)
T KOG2003|consen 488 YNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTA-EALGNLDEALDCFLKLHAILLNNAEVLVQIAN 566 (840)
T ss_pred cCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH-HHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 57777888888888899999999999999999999999999999884 68899999999999988777789999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
+|.. +.+..+|+++|.|+..+-|+++.++..++.+|-+.|+.-.|.
T Consensus 567 iye~-led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqaf 612 (840)
T KOG2003|consen 567 IYEL-LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAF 612 (840)
T ss_pred HHHH-hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhh
Confidence 9999 999999999999999999999999999999999999877665
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.8e-07 Score=77.90 Aligned_cols=114 Identities=15% Similarity=0.178 Sum_probs=97.5
Q ss_pred hCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCC
Q 020109 185 NNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKD 258 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd 258 (331)
..++...+...+++.+..+|+. ..+...+|.+++ ..|++++|...|++++...|++ +.+...+|.+++. .|+
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~-~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~-~~~ 100 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAY-EQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQ-QGQ 100 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHH-cCC
Confidence 4678899999999999999998 445566788876 6899999999999999988765 4467789999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++|+..+++ +.-.+..+.++..+|.+|...|++++|...++
T Consensus 101 ~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 101 YDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999999966 45556777889999999999999999997765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.74 E-value=3e-08 Score=73.24 Aligned_cols=65 Identities=25% Similarity=0.337 Sum_probs=60.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~ 285 (331)
..|++++|+++|++++..+|++..++..+|.+++. .|++++|..+++++++.+|+++.++.-++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLK-QGQYDEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHH-TT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 47999999999999999999999999999999999 999999999999999999998888776664
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.74 E-value=7e-08 Score=72.21 Aligned_cols=66 Identities=23% Similarity=0.225 Sum_probs=34.4
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~ 247 (331)
..|..++++++|..++++++..+|+++.++..+|.+++ ..|++.+|.+.|+++++.+|+++.+...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLF-QLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHH-HhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 34445555555555555555555555555555555543 3455555555555555555555544433
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.1e-07 Score=91.35 Aligned_cols=123 Identities=15% Similarity=0.069 Sum_probs=110.0
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-NILSLYADLIWQA 255 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~-~vL~~lA~ll~~~ 255 (331)
..-|......|+++.|...+.++.+..|+...++...|.+. ...|++++|.++++++.+..|++. .+...++.++..
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa-~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~- 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAA-QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA- 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH-
Confidence 44566777889999999999999999998777777777775 468999999999999999999986 577778999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++++|...++++++..|+++.++..++.++...|+++++...++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~ 211 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID 211 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987665
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.7e-07 Score=99.15 Aligned_cols=135 Identities=13% Similarity=0.140 Sum_probs=118.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
.+..+...++.++|-.|+.+|-.++|-.+..++..|.++ +..|++.+|.+.|..|+.+||+++.....+|.++.+ .|+
T Consensus 656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~-~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle-~G~ 733 (799)
T KOG4162|consen 656 AADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLL-EVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE-LGS 733 (799)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHH-HHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH-hCC
Confidence 456667778889999999999999999999999999885 578999999999999999999999999999999999 999
Q ss_pred HHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccccCCCCCCCC
Q 020109 259 ASRAES--YFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHTSPP 315 (331)
Q Consensus 259 ~deAie--yferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~~~~~~~~~~ 315 (331)
..-|.+ ++..|++++|.++.+|+.+|.++.+.|+.+.|..=++.--+..+..|+.|-
T Consensus 734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV~pF 792 (799)
T KOG4162|consen 734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPVLPF 792 (799)
T ss_pred cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCcccc
Confidence 988988 999999999999999999999999999999888533322223367777553
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.71 E-value=7.9e-08 Score=98.89 Aligned_cols=118 Identities=12% Similarity=0.138 Sum_probs=89.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCH---HHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN----PSDG---NILSLYADL 251 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld----P~d~---~vL~~lA~l 251 (331)
+|--|...++++.|..+|.+|+.+.|++|.++.-+|.+.| ..+.|.+|..+|+.++..- +..+ ..+.++|.+
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay-~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~ 464 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAY-TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHA 464 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheee-hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHH
Confidence 3445556677788888888888888888888777777766 3577788888888777222 1211 236778888
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+.+ .+.+++|+.+|+++|.+.|.+..++..+|.+|..+|+.+.|+.
T Consensus 465 ~Rk-l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid 510 (611)
T KOG1173|consen 465 YRK-LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAID 510 (611)
T ss_pred HHH-HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHH
Confidence 888 8889999999999999999999999999999999999888873
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.3e-08 Score=103.00 Aligned_cols=113 Identities=14% Similarity=0.174 Sum_probs=73.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n-peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.+++|+.|..+|+|++|..||.++++.+|++ ...++++|+.. ...|+++.|..+|++.++..|++++++..+|.+|..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~-i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMY-IKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH 388 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHH-HHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence 5666666666677777777777777776666 55556666663 356667777777777777777777766666666654
Q ss_pred HcC----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 255 AHK----DASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 255 ~~G----d~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.+ ..++|..++.++++..|.+..+|..++.+|...
T Consensus 389 -~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~ 427 (1018)
T KOG2002|consen 389 -SAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQT 427 (1018)
T ss_pred -hhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhc
Confidence 32 556666666777777776666666666655544
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.70 E-value=7.6e-08 Score=97.40 Aligned_cols=135 Identities=23% Similarity=0.145 Sum_probs=111.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.++|.+..+...++.++|.+||.+.-.+--++.++++.+|.+ |+...+..+|++++-+|..+-|+||.++..+|.+|-+
T Consensus 526 alfniglt~e~~~~ldeald~f~klh~il~nn~evl~qiani-ye~led~aqaie~~~q~~slip~dp~ilskl~dlydq 604 (840)
T KOG2003|consen 526 ALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANI-YELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ 604 (840)
T ss_pred HHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH-HHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence 477888888888888888888888777777788888888887 4677888888888888888888888888877665544
Q ss_pred HcCC----------------------------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 255 AHKD----------------------------------ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 255 ~~Gd----------------------------------~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.|+ .++|+.||++|--+.|+.......++.|+.+.|+|+.|...+
T Consensus 605 -egdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~y 683 (840)
T KOG2003|consen 605 -EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLY 683 (840)
T ss_pred -ccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHH
Confidence 444 466789999999999999999999999999999999999988
Q ss_pred hhcccccCCCCCCCCCc
Q 020109 301 EEGQHQTDHSHTSPPNF 317 (331)
Q Consensus 301 e~~~~~~~~~~~~~~~~ 317 (331)
+ ++|..+|.++
T Consensus 684 k------~~hrkfpedl 694 (840)
T KOG2003|consen 684 K------DIHRKFPEDL 694 (840)
T ss_pred H------HHHHhCccch
Confidence 8 7888888764
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.2e-07 Score=89.60 Aligned_cols=127 Identities=11% Similarity=0.074 Sum_probs=101.5
Q ss_pred CcccccH-HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 173 SGFSGSN-NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNY-ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 173 ~~~~~N~-A~~y~~~gd~ekA~e~yekALeldP~npeal~~y-A~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+...+.+ +.....+|+++.|..+|++|.+.+|++..+.... +.+ +...|++++|...++++++.+|+++.++..++.
T Consensus 117 p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l-~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~ 195 (398)
T PRK10747 117 PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRI-QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQ 195 (398)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHH-HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3343444 5555888999999999999999999986655433 555 357899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh------------------------------------------CCCCHHHHHHHHHHHH
Q 020109 251 LIWQAHKDASRAESYFDQAVKS------------------------------------------APDDCYVLASYAKFLW 288 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALel------------------------------------------dPdna~vl~~lA~~L~ 288 (331)
++.. .|++++|++++.++.+. .|+++.++..++..+.
T Consensus 196 ~~~~-~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~ 274 (398)
T PRK10747 196 AYIR-TGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLI 274 (398)
T ss_pred HHHH-HHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHH
Confidence 9998 99999999666665533 3446667778899999
Q ss_pred HcCCchHHHhhhh
Q 020109 289 DAGEDEEEEQDNE 301 (331)
Q Consensus 289 klG~~eEa~~~~e 301 (331)
..|+.++|...++
T Consensus 275 ~~g~~~~A~~~L~ 287 (398)
T PRK10747 275 ECDDHDTAQQIIL 287 (398)
T ss_pred HCCCHHHHHHHHH
Confidence 9999999998776
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.9e-07 Score=69.88 Aligned_cols=66 Identities=24% Similarity=0.243 Sum_probs=61.3
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 219 EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 219 ~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~ 285 (331)
...+++++|.+++++++.++|+++..+..+|.+++. .|++++|++.|+++++..|++..+....+.
T Consensus 6 ~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~-~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~ 71 (73)
T PF13371_consen 6 LQQEDYEEALEVLERALELDPDDPELWLQRARCLFQ-LGRYEEALEDLERALELSPDDPDARALRAM 71 (73)
T ss_pred HhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHH-hccHHHHHHHHHHHHHHCCCcHHHHHHHHh
Confidence 468999999999999999999999999999999999 999999999999999999999887665543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.4e-07 Score=100.85 Aligned_cols=117 Identities=12% Similarity=0.071 Sum_probs=95.8
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--------------- 235 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL--------------- 235 (331)
.|..++..+|.||.+++++++|...|+++|+.||+|+.++++||+++.+. +.++|++++.+|+
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~--dL~KA~~m~~KAV~~~i~~kq~~~~~e~ 191 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE--DKEKAITYLKKAIYRFIKKKQYVGIEEI 191 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHhhhcchHHHHH
Confidence 46678899999999999999999999999999999999999999987543 6666666665555
Q ss_pred -----HhCCCCHHHHHHH--------H------------HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 236 -----LANPSDGNILSLY--------A------------DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 236 -----~ldP~d~~vL~~l--------A------------~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
..+|++.+.+..+ + ..|.. .+++++++.+++.+++.+|.|..+...++.||...
T Consensus 192 W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~-~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~~k 270 (906)
T PRK14720 192 WSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKA-LEDWDEVIYILKKILEHDNKNNKAREELIRFYKEK 270 (906)
T ss_pred HHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhh-hhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHHHH
Confidence 5566666653322 2 33344 78999999999999999999999999999999954
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.63 E-value=5.2e-07 Score=85.67 Aligned_cols=115 Identities=14% Similarity=0.180 Sum_probs=89.8
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGN-YARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~-yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
...-.|-+|+..+++++|+++|+..|+-||.|..++-. +|.+ ..+|+--+|++-+..-+...++|.++|..++.+|+
T Consensus 88 V~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAil--ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 88 VGKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAIL--KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHH--HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 44557888999999999999999999999988776543 4444 35677777777777778888888888888888877
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
. .++|++|.-.|++++-+.|.++..+..+|.+++.+|-
T Consensus 166 ~-~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 166 S-EGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred h-HhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhh
Confidence 7 7888888888888888888777777777777777765
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.7e-07 Score=95.18 Aligned_cols=125 Identities=23% Similarity=0.269 Sum_probs=103.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC-
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-----SD- 241 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel--------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP-----~d- 241 (331)
+.++|.+|..++++++|+..|++||.+ +|.-+.++.+||.+++ ..|++++|+.||++|+.+-- +.
T Consensus 244 l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~-~~GKf~EA~~~~e~Al~I~~~~~~~~~~ 322 (508)
T KOG1840|consen 244 LNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYY-KQGKFAEAEEYCERALEIYEKLLGASHP 322 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHhhccChH
Confidence 346999999999999999999999986 5555677889999976 78999999999999986542 23
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCC---HHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 242 --GNILSLYADLIWQAHKDASRAESYFDQAVKSA-----PDD---CYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 242 --~~vL~~lA~ll~~~~Gd~deAieyferALeld-----Pdn---a~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+..+..++.++-. ++++++|+.+|.+++++. +++ +.++.++|.+|...|+++||+...++
T Consensus 323 ~v~~~l~~~~~~~~~-~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ 392 (508)
T KOG1840|consen 323 EVAAQLSELAAILQS-MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKK 392 (508)
T ss_pred HHHHHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 3345566777777 999999999999999873 233 46788999999999999999976653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.57 E-value=7.5e-07 Score=84.78 Aligned_cols=95 Identities=17% Similarity=0.127 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYV 279 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAieyferALeldPd---na~v 279 (331)
+....+..|..+....++|++|...|++.+...|++ +.+++.+|.+++. .|++++|+.+|+++++..|+ .+++
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~-~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYN-KGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 455556666554345699999999999999999998 5799999999999 99999999999999999886 5688
Q ss_pred HHHHHHHHHHcCCchHHHhhhh
Q 020109 280 LASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 280 l~~lA~~L~klG~~eEa~~~~e 301 (331)
++.+|.++...|++++|...++
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~ 241 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQ 241 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999887
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.2e-07 Score=87.10 Aligned_cols=81 Identities=15% Similarity=0.097 Sum_probs=77.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
..++|.+|+..|.+||+++|.|+.++.+.|-+|.+ .|.++.|++-.+.||.+||....+|..+|.+|..+|++++|+.-
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~-Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~a 171 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSK-LGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEA 171 (304)
T ss_pred HhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHH-hcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 46899999999999999999999999999999999 99999999999999999999999999999999999999999965
Q ss_pred hh
Q 020109 300 NE 301 (331)
Q Consensus 300 ~e 301 (331)
++
T Consensus 172 yk 173 (304)
T KOG0553|consen 172 YK 173 (304)
T ss_pred HH
Confidence 43
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.4e-06 Score=88.56 Aligned_cols=101 Identities=19% Similarity=0.199 Sum_probs=93.2
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 199 MIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 199 ALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
+...+|.-+.+++..|...| ..+++++|+..++.++..-|+|++++...+.+++. .++.++|++.+++++.++|+...
T Consensus 298 ~~~~~~~~~aa~YG~A~~~~-~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~-~nk~~~A~e~~~kal~l~P~~~~ 375 (484)
T COG4783 298 AKRSKRGGLAAQYGRALQTY-LAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLE-ANKAKEAIERLKKALALDPNSPL 375 (484)
T ss_pred HHHhCccchHHHHHHHHHHH-HhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCCCccH
Confidence 33445778888888888866 57999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHHHHHHHHHcCCchHHHhhhh
Q 020109 279 VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 279 vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.+||..|.+.|++++|+..+.
T Consensus 376 l~~~~a~all~~g~~~eai~~L~ 398 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILN 398 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHH
Confidence 99999999999999999998887
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-07 Score=90.86 Aligned_cols=105 Identities=19% Similarity=0.092 Sum_probs=94.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~d 260 (331)
+-|+++|.|++|+.||.++|.++|-|+.++.+-|..+ .....+..|+.-|..||.+|-....++...+.+-+. .|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AY-lk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~-Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAY-LKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES-LGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHH-HHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH-HhhHH
Confidence 4678999999999999999999999999999988875 467999999999999999999888899999998888 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 261 RAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 261 eAieyferALeldPdna~vl~~lA~~L 287 (331)
+|.+-++++|++.|++..+.-.++.+-
T Consensus 183 EAKkD~E~vL~LEP~~~ELkK~~a~i~ 209 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNIELKKSLARIN 209 (536)
T ss_pred HHHHhHHHHHhhCcccHHHHHHHHHhc
Confidence 999999999999999887666655543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.1e-06 Score=90.88 Aligned_cols=126 Identities=21% Similarity=0.215 Sum_probs=107.0
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN------ 238 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALel--------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld------ 238 (331)
...+.|.+..+..++++++|+.+|++++++ ++.-+....+||.+++ ..|+|.+|+++|++||++.
T Consensus 325 ~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~-~~gk~~ea~~~~k~ai~~~~~~~~~ 403 (508)
T KOG1840|consen 325 AAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYL-KMGKYKEAEELYKKAIQILRELLGK 403 (508)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhcccC
Confidence 345889999999999999999999999986 2334667889999865 6899999999999999875
Q ss_pred --CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 239 --PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS-------APDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 239 --P~d~~vL~~lA~ll~~~~Gd~deAieyferALel-------dPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
+....++..+|..+.+ .+++.+|..+|.+++.+ .|+-..++.+++.+|..+|++++|++..
T Consensus 404 ~~~~~~~~l~~la~~~~~-~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~ 473 (508)
T KOG1840|consen 404 KDYGVGKPLNQLAEAYEE-LKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELE 473 (508)
T ss_pred cChhhhHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3346678889999988 99999999999998876 3466688999999999999999999643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-07 Score=98.83 Aligned_cols=119 Identities=17% Similarity=0.084 Sum_probs=109.1
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~d 260 (331)
.....+++|.+|..+++..++++|-....|++++.+.. ...+++.|.++|.+++.++|++.+++.+++..+.+ .++-.
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~AL-qlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~-~~~k~ 570 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAAL-QLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIR-LKKKK 570 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHH-HHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHH-HhhhH
Confidence 33445689999999999999999999999999998854 67999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 261 RAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 261 eAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|...+++|++.+-.+..+|.++..+..+.|++++|...+.
T Consensus 571 ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 571 RAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred HHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999999999999999999999999999999997654
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.2e-06 Score=79.47 Aligned_cols=97 Identities=21% Similarity=0.151 Sum_probs=74.8
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--c-------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEV--R-------GDFAKAEELCGRAILANPSDGNILSLYADLIWQAH--- 256 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~--~-------GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~--- 256 (331)
++.|.+.++..+..||.|++.++++|..|.++ . .-+++|+.-|++||.++|+..+++..+|.++.. .
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts-~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTS-LAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH-HHhh
Confidence 57899999999999999999999999776543 1 245778999999999999999999999988855 3
Q ss_pred --------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 257 --------KDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 257 --------Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
.-|++|..+|++|+..+|++...+-.+..+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 348889999999999999998666655444
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.4e-06 Score=88.57 Aligned_cols=110 Identities=7% Similarity=0.067 Sum_probs=92.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
.+..+|....++|+++||.|+.++..+|.++. ..++++.|...|++|+.++|+.+.+++.+|++.+. .|+.++|.+.+
T Consensus 318 ~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~-~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~-~G~~~~a~~~i 395 (458)
T PRK11906 318 LAAQKALELLDYVSDITTVDGKILAIMGLITG-LSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFH-NEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-hhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 45689999999999999999999999999877 46889999999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHH-HHHcCCchHHHh
Q 020109 267 DQAVKSAPDDCYVLASYAKF-LWDAGEDEEEEQ 298 (331)
Q Consensus 267 erALeldPdna~vl~~lA~~-L~klG~~eEa~~ 298 (331)
++|++++|....+-...-.+ .+-....++++.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIK 428 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCCchhhhHH
Confidence 99999999665443333333 333445666664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.7e-06 Score=92.81 Aligned_cols=129 Identities=19% Similarity=0.155 Sum_probs=112.1
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
-+....+-+|.+|+++|+.+++..++..|-.++|++.+.|..+|... ..++++.+|.-||.+||+.+|.+.......+.
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls-~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~ 249 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS-EQLGNINQARYCYSRAIQANPSNWELIYERSS 249 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH-HhcccHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence 56666788999999999999999999999999999999999999996 47899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDC-----YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna-----~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++-+ +|+..+|.+.|.+++++.|... +....+++.+...++.+.|.+.++
T Consensus 250 L~~~-~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 250 LYQK-TGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHH-hChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999 9999999999999999999222 223345677777777766666554
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.6e-06 Score=78.95 Aligned_cols=126 Identities=17% Similarity=0.071 Sum_probs=101.5
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSL 247 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal---~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL~~ 247 (331)
...+..|.-+...+++++|+..|++++...|..+.+. ..+|.+++ ..+++++|..+|++.++..|+++. +++.
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy-~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~ 111 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVLYM 111 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence 3366778888999999999999999999999987765 67888876 689999999999999999998654 5666
Q ss_pred HHHHHHHHcC---------------C---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCC
Q 020109 248 YADLIWQAHK---------------D---ASRAESYFDQAVKSAPDDCYV-----------------LASYAKFLWDAGE 292 (331)
Q Consensus 248 lA~ll~~~~G---------------d---~deAieyferALeldPdna~v-----------------l~~lA~~L~klG~ 292 (331)
.|...+. .+ | ..+|+..|++.|+..|+..++ -+.+|.+|++.|.
T Consensus 112 ~g~~~~~-~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 112 RGLTNMA-LDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHhhhh-cchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 6665432 22 2 357889999999999988764 2356888999999
Q ss_pred chHHHhhhh
Q 020109 293 DEEEEQDNE 301 (331)
Q Consensus 293 ~eEa~~~~e 301 (331)
+.-|+.-.+
T Consensus 191 y~AA~~r~~ 199 (243)
T PRK10866 191 YVAVVNRVE 199 (243)
T ss_pred hHHHHHHHH
Confidence 988886665
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.5e-07 Score=80.01 Aligned_cols=97 Identities=12% Similarity=-0.059 Sum_probs=88.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
.++.-+.++.+|.-+| ..|++++|+.+|+-+...||.|+.++..+|-++.. +++|++|+..|..|..++++++...+.
T Consensus 33 s~~~le~iY~~Ay~~y-~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~-~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 33 PQDMMDGLYAHAYEFY-NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQL-KKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHcccCCCCccch
Confidence 4445566778887777 58999999999999999999999999999999998 999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHhhhh
Q 020109 283 YAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 283 lA~~L~klG~~eEa~~~~e 301 (331)
.|.|+..+++.+.|..-++
T Consensus 111 agqC~l~l~~~~~A~~~f~ 129 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFE 129 (165)
T ss_pred HHHHHHHhCCHHHHHHHHH
Confidence 9999999999999986444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=95.60 Aligned_cols=127 Identities=9% Similarity=0.003 Sum_probs=107.2
Q ss_pred CCCCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------
Q 020109 169 GGGGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------- 241 (331)
Q Consensus 169 ~~~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------- 241 (331)
+..|...+.-+...|...+++++|+..++.+++.+|+...+++.+|.+++ ..+++.+|.-. +++.+-+.+
T Consensus 27 ~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~-q~~~~~~~~lv--~~l~~~~~~~~~~~ve 103 (906)
T PRK14720 27 SLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSL-SRRPLNDSNLL--NLIDSFSQNLKWAIVE 103 (906)
T ss_pred CcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHH-hhcchhhhhhh--hhhhhcccccchhHHH
Confidence 34566667778888989999999999999999999999999999999654 55656555444 444444444
Q ss_pred ------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 242 ------------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 242 ------------~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.++++.+|.+|-+ +|+.++|...|+++++.+|+|+.++.+||.+|... +.++|....
T Consensus 104 ~~~~~i~~~~~~k~Al~~LA~~Ydk-~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 104 HICDKILLYGENKLALRTLAEAYAK-LNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHH-cCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 4999999999999 99999999999999999999999999999999999 999998543
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.4e-06 Score=74.37 Aligned_cols=93 Identities=17% Similarity=0.167 Sum_probs=80.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
....+|..+...|++++|+..|++++...|+. +.+...+|.++. ..+++++|+..++. +.-.+-.+.++...|++
T Consensus 50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQYDEALATLQQ-IPDEAFKALAAELLGDI 127 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHh-ccCcchHHHHHHHHHHH
Confidence 34568899999999999999999999988765 456778898875 68999999999976 45566778889999999
Q ss_pred HHHHcCCHHHHHHHHHHHH
Q 020109 252 IWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 252 l~~~~Gd~deAieyferAL 270 (331)
+.. .|++++|+..|++||
T Consensus 128 ~~~-~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 128 YLA-QGDYDEARAAYQKAL 145 (145)
T ss_pred HHH-CCCHHHHHHHHHHhC
Confidence 999 999999999999985
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.46 E-value=3.1e-06 Score=71.81 Aligned_cols=96 Identities=14% Similarity=0.085 Sum_probs=80.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---DGNILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---d~~vL~~l 248 (331)
..++.|..+...|+.++|+.+|+++++..... ..++..+|..+ ...|++++|+..+++++...|+ +..+...+
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastl-r~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTL-RNLGRYDEALALLEEALEEFPDDELNAALRVFL 81 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence 35678889999999999999999999976554 45677888886 4789999999999999998888 77888888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALel 272 (331)
|.+++. .|+.++|+..+-+++.-
T Consensus 82 Al~L~~-~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 82 ALALYN-LGRPKEALEWLLEALAE 104 (120)
T ss_pred HHHHHH-CCCHHHHHHHHHHHHHH
Confidence 999898 99999999999888764
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.9e-06 Score=86.25 Aligned_cols=79 Identities=29% Similarity=0.354 Sum_probs=52.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 222 GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 222 GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|++++|.+++++||...|..++.+...|.++-. .|++++|.++++.|.++|+.|-++....+..+.+.|+.++|++...
T Consensus 208 g~~~~Al~~Id~aI~htPt~~ely~~KarilKh-~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~ 286 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHTPTLVELYMTKARILKH-AGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTAS 286 (517)
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566666666666666666666666666666666 6666666666666666666666666666666666666666665554
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.5e-07 Score=90.75 Aligned_cols=123 Identities=9% Similarity=0.013 Sum_probs=97.2
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
-.+...|+.++.++++++|.++|+.+++.+|.|.++....|.-++ ..++.+-|..||++.|+..-.+|+.+.++|.+.+
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 345567899999999999999999999999999888777765433 4678888888888888888888888888888887
Q ss_pred HHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHh
Q 020109 254 QAHKDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldP---dna~vl~~lA~~L~klG~~eEa~~ 298 (331)
- .+++|-++.-|+||+...- .-+++||+++.+....|++.-|..
T Consensus 370 y-aqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~r 416 (478)
T KOG1129|consen 370 Y-AQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKR 416 (478)
T ss_pred h-hcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHH
Confidence 7 7888888888888877643 345778888877777777777664
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=93.60 Aligned_cols=119 Identities=13% Similarity=0.085 Sum_probs=108.3
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILS 246 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d-~~vL~ 246 (331)
.|+.++..+|++|+-.++|..+...+..|+...-.. ++.++.+|..++ .+|||++|..||.++++.+|++ ...++
T Consensus 268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H-a~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH-AQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccCCCCcccccc
Confidence 689999999999999999999999999999987554 444888999854 7899999999999999999999 77788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
.+|..++. .|+++.|+..|++.++..|+++.++..+|.+|...+
T Consensus 347 GlgQm~i~-~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~ 390 (1018)
T KOG2002|consen 347 GLGQMYIK-RGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA 390 (1018)
T ss_pred chhHHHHH-hchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence 89999999 999999999999999999999999999999999885
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.6e-06 Score=69.45 Aligned_cols=92 Identities=21% Similarity=0.139 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYVL 280 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAieyferALeldPd---na~vl 280 (331)
|.+++.+|.++ ...|+.++|+.+|++|+...... ..++..+|..+.. .|++++|+.++++++...|+ +..+.
T Consensus 1 ~~~~~~~A~a~-d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~-LG~~deA~~~L~~~~~~~p~~~~~~~l~ 78 (120)
T PF12688_consen 1 PRALYELAWAH-DSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRN-LGRYDEALALLEEALEEFPDDELNAALR 78 (120)
T ss_pred CchHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCccccHHHH
Confidence 35678888886 47899999999999999987665 4578889999999 99999999999999999998 88899
Q ss_pred HHHHHHHHHcCCchHHHhhh
Q 020109 281 ASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 281 ~~lA~~L~klG~~eEa~~~~ 300 (331)
..++.++...|+++||...+
T Consensus 79 ~f~Al~L~~~gr~~eAl~~~ 98 (120)
T PF12688_consen 79 VFLALALYNLGRPKEALEWL 98 (120)
T ss_pred HHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999998654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.9e-06 Score=86.00 Aligned_cols=98 Identities=12% Similarity=0.093 Sum_probs=88.2
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+.|+|.+|.+.+.|..|+.++.++|+.+|+|..+++.-|.++. ..++|+.|...|++|++++|+|-.+...+..+.-+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l-~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALL-ALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKI 338 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHH-hhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 6799999999999999999999999999999999999999964 689999999999999999999999999999988883
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 020109 256 HKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 256 ~Gd~deAieyferALeldP 274 (331)
....++..++|.+++..-+
T Consensus 339 ~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 339 REYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHhhccc
Confidence 4455555788998888766
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=88.54 Aligned_cols=104 Identities=14% Similarity=0.130 Sum_probs=95.3
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
..+..++|+.|+.+|..||.++|.|-..+.+-...+. ..++|++|.+--.+.+.++|+=+..|...|..++- .|+|++
T Consensus 11 aa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a-~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~-lg~~~e 88 (539)
T KOG0548|consen 11 AAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYA-SLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFG-LGDYEE 88 (539)
T ss_pred hhcccccHHHHHHHHHHHHccCCCccchhcchHHHHH-HHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHh-cccHHH
Confidence 3456799999999999999999998888777655543 67999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L 287 (331)
|+..|...|+.+|+|..++..++.++
T Consensus 89 A~~ay~~GL~~d~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 89 AILAYSEGLEKDPSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHhhcCCchHHHHHhHHHhh
Confidence 99999999999999999999998888
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.5e-06 Score=88.12 Aligned_cols=68 Identities=16% Similarity=0.055 Sum_probs=33.2
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v---L~~lA~ll~~~~Gd~deAieyferALel 272 (331)
+|+++.+++++|.+++ ..|+|++|+.+|++||+++|+++.+ ++++|.+|.. +|++++|+++|++|+++
T Consensus 71 dP~~a~a~~NLG~AL~-~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~-LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKTAEDAVNLGLSLF-SKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAY-REEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHh
Confidence 4445555555554443 3455555555555555555554432 4445554444 45555555555555544
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-06 Score=86.52 Aligned_cols=129 Identities=16% Similarity=0.134 Sum_probs=111.4
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH------------------------------
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV------------------------------ 220 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~------------------------------ 220 (331)
-|--+++-+|++|+..|++++|+..|+++.-+||.+...+-.||.++.+.
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL 309 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence 46667888999999999999999999999999999998888888776421
Q ss_pred ---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 221 ---RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 221 ---~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
.+++..|..+.+++|..+|++..++.+.|.+++. .++.++|+-.|..|+.+.|.+-+.|.-+-++|...++..||.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~-~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIA-LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHh-ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 1477888899999999999999999999999888 899999999999999999988899999999999999988887
Q ss_pred hhh
Q 020109 298 QDN 300 (331)
Q Consensus 298 ~~~ 300 (331)
..-
T Consensus 389 ~~A 391 (564)
T KOG1174|consen 389 ALA 391 (564)
T ss_pred HHH
Confidence 543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.4e-06 Score=81.40 Aligned_cols=122 Identities=16% Similarity=0.248 Sum_probs=101.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
.|.+|....++.+.|..+|.+|++..+-+..+|..+|.+-+...++.+.|..+|+++++..|.++.++..|...+.. .+
T Consensus 6 ~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~-~~ 84 (280)
T PF05843_consen 6 QYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIK-LN 84 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hC
Confidence 46678888888999999999999666668889999998866556777779999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCchHHHhhh
Q 020109 258 DASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 258 d~deAieyferALeldPdna---~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
+.+.|..+|++++..-|... .+|..+..+-.+.|+.+...+..
T Consensus 85 d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~ 130 (280)
T PF05843_consen 85 DINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVE 130 (280)
T ss_dssp -HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999988555 78999999999999876665443
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.9e-06 Score=76.91 Aligned_cols=126 Identities=16% Similarity=0.160 Sum_probs=96.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~---~vL~~l 248 (331)
.++..|..+...|++.+|+..|++.+...|.. +.+...+|..++ ..+++++|...|++.+...|+++ ++++..
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~ 85 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKADYALYML 85 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcchhhHHHHH
Confidence 35677889999999999999999999999985 557788888876 68999999999999999999866 467777
Q ss_pred HHHHHHH----------cCCHHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQA----------HKDASRAESYFDQAVKSAPDDCYV-----------------LASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~----------~Gd~deAieyferALeldPdna~v-----------------l~~lA~~L~klG~~eEa~~~~e 301 (331)
|..++.. .....+|+..|+..++..|++..+ -+.+|.+|++.+.+.-|..-.+
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 7776551 233458999999999999988765 2356888999998888876554
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.9e-07 Score=89.12 Aligned_cols=133 Identities=15% Similarity=0.058 Sum_probs=108.6
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGN------------YARFLKEVRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~------------yA~lLy~~~GdyeeAee~~erAL~ld 238 (331)
-|...++..+.++.-..+.++|+.+|+++|.++|.....-.. -|.-++ ..|+|.+|.++|-.||.+|
T Consensus 201 ~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~f-k~G~y~~A~E~Yteal~id 279 (486)
T KOG0550|consen 201 TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAF-KNGNYRKAYECYTEALNID 279 (486)
T ss_pred chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHh-hccchhHHHHHHHHhhcCC
Confidence 455556666667777788999999999999999987654332 232333 4689999999999999999
Q ss_pred CCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 239 PSDGN----ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 239 P~d~~----vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
|++.. .+...|.+..+ .|+..+|+.-.+.|++++|.-..++...|.|+..++++++|..+.+.-++
T Consensus 280 P~n~~~naklY~nra~v~~r-Lgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 280 PSNKKTNAKLYGNRALVNIR-LGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQ 349 (486)
T ss_pred ccccchhHHHHHHhHhhhcc-cCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 98654 45566778888 99999999999999999999999999999999999999999988874433
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=6.3e-06 Score=76.52 Aligned_cols=113 Identities=20% Similarity=0.207 Sum_probs=93.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNAL-----LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npe-----al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
-++++|+|++|..-|..||+.-|..+. .+.+-|.++ ..++.++.|++-|-+||+++|.+..++...|.+|-+ +
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~-iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek-~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAAL-IKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK-M 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHH-HHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh-h
Confidence 456789999999999999999998533 344445443 357899999999999999999999999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHH
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEE 296 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa 296 (331)
.+|++|++-|++.++++|....+....+++--...+..|.
T Consensus 182 ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEk 221 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEK 221 (271)
T ss_pred hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999999999998888777777666665554333
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=85.19 Aligned_cols=119 Identities=10% Similarity=-0.000 Sum_probs=90.9
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
.-+++.|...++.+.|...|...+...|.+.-++...|.++ +..+++++|.++|+++++++|.|.++....|..+|- .
T Consensus 260 llLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~-eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY-~ 337 (478)
T KOG1129|consen 260 LLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIH-EAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY-D 337 (478)
T ss_pred HHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHH-HHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc-C
Confidence 34566666666666666666667777777777777777774 466788888888888888888888888888887777 7
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++.+-|+.||.|.+++.-.++..+.++|.|.+..++++-+-
T Consensus 338 ~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L 378 (478)
T KOG1129|consen 338 NNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVL 378 (478)
T ss_pred CChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhH
Confidence 88888888888888888888888888888888777776554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-05 Score=76.43 Aligned_cols=118 Identities=15% Similarity=0.124 Sum_probs=105.0
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
...+..+-|..|+.+.-...|+.+.+....|.++ +..++|++|+++|+..|+-||.|..++...-.++-. +|+--+|+
T Consensus 63 ld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~l-Ea~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka-~GK~l~aI 140 (289)
T KOG3060|consen 63 LDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLL-EATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKA-QGKNLEAI 140 (289)
T ss_pred HHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHH-HHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHH-cCCcHHHH
Confidence 3457889999999999999999999999999886 689999999999999999999998887755444444 89999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+.+...++..+.|.++|..++.+|...|+++.|..=+||.
T Consensus 141 k~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 141 KELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999766643
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.3e-05 Score=76.55 Aligned_cols=105 Identities=12% Similarity=0.103 Sum_probs=95.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYA 249 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA 249 (331)
.||.|.-+.+.|+|..|+..|++-|..-|++ +.+++.|+.++| .+|+|+.|..+|..+++..|+. |+.+..+|
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y-~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLY-AQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHH-hcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 7999999999999999999999999999985 778899999987 6899999999999999998875 57799999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
.++.+ .++-++|...|+++++..|+...+...
T Consensus 223 ~~~~~-l~~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 223 VSLGR-LGNTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHH-hcCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 99999 999999999999999999987765443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.6e-06 Score=80.21 Aligned_cols=125 Identities=13% Similarity=0.056 Sum_probs=106.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np-----eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
.+-.+...|.+.+++++|++.-++...+.+.+- -++..||... ....+.++|.+.+.+|++.||++..+-..+|
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~-~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG 221 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQA-LASSDVDRARELLKKALQADKKCVRASIILG 221 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHH-hhhhhHHHHHHHHHHHHhhCccceehhhhhh
Confidence 355678899999999999999999999988753 2344455443 3467899999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDD-CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdn-a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+... .|+|+.|++.++++++-+|+. +.+...+..||..+|+.++...=++
T Consensus 222 ~v~~~-~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~ 273 (389)
T COG2956 222 RVELA-KGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLR 273 (389)
T ss_pred HHHHh-ccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999 999999999999999999955 4788899999999999988875443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.32 E-value=4.5e-06 Score=82.52 Aligned_cols=125 Identities=19% Similarity=0.144 Sum_probs=99.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------------------------------HHcC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK---------------------------------EVRG 222 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy---------------------------------~~~G 222 (331)
..-+|+-+..++++..|...|..|++.||++..+++.-|.++. ..+|
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 3446777888899999999999999999999888877665421 1247
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHH---HHHHH------------HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 223 DFAKAEELCGRAILANPSDGNIL---SLYAD------------LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 223 dyeeAee~~erAL~ldP~d~~vL---~~lA~------------ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
++++|+.-|+++|+-+|++..++ ..++. -++- .||+.-|+++..+.|++.|-++.++...+.||
T Consensus 121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~-~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG-SGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc-CCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 88889999999998888654433 23321 2222 58888999999999999999999999999999
Q ss_pred HHcCCchHHHhhhh
Q 020109 288 WDAGEDEEEEQDNE 301 (331)
Q Consensus 288 ~klG~~eEa~~~~e 301 (331)
...|+...|+.|++
T Consensus 200 i~~~e~k~AI~Dlk 213 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLK 213 (504)
T ss_pred HhcCcHHHHHHHHH
Confidence 99999999999887
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.4e-06 Score=85.34 Aligned_cols=125 Identities=25% Similarity=0.335 Sum_probs=109.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---------------
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--------------- 239 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP--------------- 239 (331)
+--.++++-++.++.-+|...++++...||+|+.+|...-.+-. ..|+.+.|+...-+||+..|
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El-R~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~ 799 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL-RAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPR 799 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccC
Confidence 44568888888899999999999999999999999887776643 57999999999999998888
Q ss_pred ---------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 240 ---------------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 240 ---------------~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|+.++...|.++|. ..++++|.++|.|||+++|++.++|..+-.++...|..++-...+.
T Consensus 800 ~~rkTks~DALkkce~dphVllaia~lfw~-e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~ 875 (913)
T KOG0495|consen 800 PQRKTKSIDALKKCEHDPHVLLAIAKLFWS-EKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLK 875 (913)
T ss_pred cccchHHHHHHHhccCCchhHHHHHHHHHH-HHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 577778888999999 9999999999999999999999999999999999998766665443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-06 Score=92.82 Aligned_cols=125 Identities=16% Similarity=0.055 Sum_probs=109.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----------------------------------H
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE-----------------------------------V 220 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~-----------------------------------~ 220 (331)
+.-+|.+|....+...|..||++|.++||.+.++....+..+.+ .
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence 34567788877788999999999999999999987776655321 1
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
.++...|...|+-|+..+|+|...+..++.+|.. .|++..|++.|.+|..++|.+.+..+..+......|+|.++-..+
T Consensus 575 a~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~-sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l 653 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPE-SGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDAL 653 (1238)
T ss_pred ccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHh-cCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 2577889999999999999999999999999999 999999999999999999999999999999999999999998666
Q ss_pred h
Q 020109 301 E 301 (331)
Q Consensus 301 e 301 (331)
+
T Consensus 654 ~ 654 (1238)
T KOG1127|consen 654 G 654 (1238)
T ss_pred H
Confidence 5
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.6e-06 Score=85.51 Aligned_cols=122 Identities=13% Similarity=0.061 Sum_probs=106.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH------------H
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNIL------------S 246 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL------------~ 246 (331)
=+.++-..++++.|...--..+++|+.+.++++.-+.++| ...+.++|...|+++|.++|+..... .
T Consensus 175 ka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~y-y~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k 253 (486)
T KOG0550|consen 175 KAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLY-YNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK 253 (486)
T ss_pred hhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccc-cccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence 3567778899999999999999999999999998888877 57999999999999999999876543 3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna----~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.-|.-+++ .|++.+|.+.|..||.++|++. ..|.++|.+..++|+..||+.++++
T Consensus 254 ~~gN~~fk-~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~ 312 (486)
T KOG0550|consen 254 ERGNDAFK-NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE 312 (486)
T ss_pred hhhhhHhh-ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence 34677788 9999999999999999999554 5688999999999999999999974
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=83.14 Aligned_cols=124 Identities=19% Similarity=0.097 Sum_probs=109.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+-+|.+|...|++++|.+++++||+..|..++++..-|.++. ..|++.+|.++++.|-.+|+.|-++....+..+++
T Consensus 197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR- 274 (517)
T PF12569_consen 197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR- 274 (517)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH-
Confidence 5667999999999999999999999999999999999999976 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhC--CCC-------HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSA--PDD-------CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeld--Pdn-------a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|+.++|++.+..-.+.+ |.. .+.....|.+|.+.|++..|-+-+.
T Consensus 275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~ 329 (517)
T PF12569_consen 275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFH 329 (517)
T ss_pred CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999998887766 311 2344566999999999999986544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.7e-06 Score=86.55 Aligned_cols=123 Identities=12% Similarity=-0.021 Sum_probs=109.5
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
.+...|+-++|..+.+.++..|+.....|--||.+ ++...+|++|++||..|+.++|+|-.++..++.+..+ +++++-
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~-~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q-mRd~~~ 127 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL-QRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQ-MRDYEG 127 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcccchhHHHHHHH-HhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH-HHhhhh
Confidence 34456788999999999999999999999889988 4678999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccc
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQ 306 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~ 306 (331)
....-.+.+++.|.+-..|..++..+--.|++..|..+.++-...
T Consensus 128 ~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t 172 (700)
T KOG1156|consen 128 YLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKT 172 (700)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999877644433
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.5e-06 Score=90.11 Aligned_cols=125 Identities=13% Similarity=0.057 Sum_probs=109.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-----H----------------------HcCCHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK-----E----------------------VRGDFAKA 227 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy-----~----------------------~~GdyeeA 227 (331)
..-+...||...|+..+|....++-|+ +|.++..|..+++++. + ..++|++|
T Consensus 426 mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~ 504 (777)
T KOG1128|consen 426 MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEA 504 (777)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHH
Confidence 345677889999988999998888888 6667777777766531 0 13689999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 228 EELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 228 ee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+++++.++++|-.+..|+.++.+.++ .++++.|.++|.+++.++|++...|.+++..|.+.++..+|...++
T Consensus 505 ~~hle~sl~~nplq~~~wf~~G~~ALq-lek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~ 577 (777)
T KOG1128|consen 505 DKHLERSLEINPLQLGTWFGLGCAALQ-LEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLK 577 (777)
T ss_pred HHHHHHHhhcCccchhHHHhccHHHHH-HhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999986655
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.23 E-value=8.1e-06 Score=84.39 Aligned_cols=122 Identities=17% Similarity=0.073 Sum_probs=110.6
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
.-.|-+|.-.+++.+|..||-||-.+||....+|..||..+. ..++.++|..+|.+|-++-|..-.-...+|.=+.+ .
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa-~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~-t 393 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFA-GEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMR-T 393 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhh-hcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHH-h
Confidence 334567788899999999999999999999999999998865 68999999999999999999887777788888888 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
++++.|..+|.+|+.+.|.++.++-.+|.+.+..+.+.+|+.-+
T Consensus 394 ~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999544
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.23 E-value=6.8e-06 Score=87.27 Aligned_cols=97 Identities=13% Similarity=0.144 Sum_probs=89.7
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEE--LCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee--~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
.|..+..+++.++|+.+|..|+.+||+++.....+|.++. ..|+..-|+. ++..|+++||.|+++|+.+|.++.. .
T Consensus 690 ~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~-~ 767 (799)
T KOG4162|consen 690 RGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKK-L 767 (799)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-c
Confidence 4578888899999999999999999999999999999975 5788777877 9999999999999999999999998 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCH
Q 020109 257 KDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 257 Gd~deAieyferALeldPdna 277 (331)
|+.++|.+.|+.|+++++.++
T Consensus 768 Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 768 GDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred cchHHHHHHHHHHHhhccCCC
Confidence 999999999999999998766
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.3e-06 Score=79.89 Aligned_cols=124 Identities=15% Similarity=0.046 Sum_probs=98.0
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G--dyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
+.-...-...+|..+++++.|...++++-+.+.+.......-|.+.. ..| .+.+|..+|+......+..+..+..+|
T Consensus 130 ~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l-~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A 208 (290)
T PF04733_consen 130 SLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNL-ATGGEKYQDAFYIFEELSDKFGSTPKLLNGLA 208 (290)
T ss_dssp CHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHH-HHTTTCCCHHHHHHHHHHCCS--SHHHHHHHH
T ss_pred cccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH-HhCchhHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence 34445556778999999999999999998887765554444444432 334 689999999999888889999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
.+.+. +|++++|++.+++|++.+|.+++++.+++.+...+|+..++.
T Consensus 209 ~~~l~-~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~ 255 (290)
T PF04733_consen 209 VCHLQ-LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAA 255 (290)
T ss_dssp HHHHH-CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHH
T ss_pred HHHHH-hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHH
Confidence 99999 999999999999999999999999999999999999984443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.3e-05 Score=80.66 Aligned_cols=98 Identities=16% Similarity=0.089 Sum_probs=87.9
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
+..-.-+|+.+...++..+|+..+.++|..+|.+.+.+...|.++. ..++++.|+++.++|+.+.|++...|..+|.+|
T Consensus 200 pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Y 278 (395)
T PF09295_consen 200 PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELALEIAKKAVELSPSEFETWYQLAECY 278 (395)
T ss_pred CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence 3445568999999999999999999999999999999999999974 789999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHh
Q 020109 253 WQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 253 ~~~~Gd~deAieyferALel 272 (331)
.. .|+++.|+..+..+=-.
T Consensus 279 i~-~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 279 IQ-LGDFENALLALNSCPML 297 (395)
T ss_pred Hh-cCCHHHHHHHHhcCcCC
Confidence 99 99999999776644333
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.4e-06 Score=77.12 Aligned_cols=114 Identities=18% Similarity=0.057 Sum_probs=92.4
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
.|+..+.|+.|+.+|.+||.++|..+.++.+-|.++. ..++++.+++-+.+|++++|+-...++.++..+.+ ...|++
T Consensus 19 k~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchl-k~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~-s~~~~e 96 (284)
T KOG4642|consen 19 KCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHL-KLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ-SKGYDE 96 (284)
T ss_pred cccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHH-HhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh-hccccH
Confidence 3445688999999999999999999999999998865 57999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCCchHHH
Q 020109 262 AESYFDQAVKSA-----PDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 262 AieyferALeld-----Pdna~vl~~lA~~L~klG~~eEa~ 297 (331)
|+..+.+|..+. |.-.+++..+-++-....+..++.
T Consensus 97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~ 137 (284)
T KOG4642|consen 97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEK 137 (284)
T ss_pred HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHH
Confidence 999999996652 222344445544444444444444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.16 E-value=4e-05 Score=76.48 Aligned_cols=126 Identities=20% Similarity=0.132 Sum_probs=107.4
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
+-...-||..+...++++.|.+..+.+|+..-+.. +..+...+ ..+++..=++..++.++..|++|..+..+|.++
T Consensus 263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~--L~~~~~~l--~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR--LCRLIPRL--RPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh--HHHHHhhc--CCCCchHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 34455688999999999999999999999865433 33333332 468999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
++ .+.+.+|.++|+.|++..| +...+..+|+++.++|+.++|+...++..
T Consensus 339 ~k-~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 339 LK-NKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HH-hhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 99 9999999999999999999 66678899999999999999997776544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.8e-06 Score=85.17 Aligned_cols=113 Identities=13% Similarity=0.069 Sum_probs=105.3
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
++.++|.+.....+..|...|..++.+...|..++ -.|+-++|..+++.++..|+.....|-.+|.++.. .++|++|+
T Consensus 18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~-~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~-dK~Y~eai 95 (700)
T KOG1156|consen 18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLN-CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRS-DKKYDEAI 95 (700)
T ss_pred HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhh-cccchHHHHHHHHHHhccCcccchhHHHHHHHHhh-hhhHHHHH
Confidence 34479999999999999999999999999998876 57999999999999999999999999999999998 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+.|..|++++|+|..+|..++....+.++++-...
T Consensus 96 Kcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~ 130 (700)
T KOG1156|consen 96 KCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLE 130 (700)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHH
Confidence 99999999999999999999999999999876654
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.4e-06 Score=64.04 Aligned_cols=64 Identities=20% Similarity=0.289 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILA----NPS---DGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~l----dP~---d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
..++.++|.+++ ..|++++|+.+|++|+.+ .++ -+.++..+|.++.. .|++++|+++|++|+++
T Consensus 5 a~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYR-ELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYR-LGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhh
Confidence 445666676654 567777777777777744 112 24456667777777 77777777777777765
|
... |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2.5e-05 Score=82.17 Aligned_cols=125 Identities=17% Similarity=0.110 Sum_probs=116.9
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
-.....-++++..-.++.++|+.+++++|+..|....+|..+|+++ +..++.+.|.+.|..-++..|+.+..|..++.+
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~-e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakl 728 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIE-EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKL 728 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHH-HHHHHHHHHHHHHHhccccCCCCchHHHHHHHH
Confidence 3456677888999999999999999999999999999999999995 578999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
-.+ .|+.-+|...++++.-.+|.+..+|.....+-.+.|+.+.|+.
T Consensus 729 eEk-~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 729 EEK-DGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHH-hcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHH
Confidence 888 8999999999999999999999999999999999999998873
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-05 Score=81.64 Aligned_cols=86 Identities=13% Similarity=0.031 Sum_probs=74.2
Q ss_pred cHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yekALel--dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
..++....++++.+ +|.++.++..+|.... ..|++++|...+++|+.++| +..++..+|.++.. .|++++|+++|
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~-~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~-~G~~~eA~~~~ 476 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQAL-VKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYEL-KGDNRLAADAY 476 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHH-cCCHHHHHHHH
Confidence 35666677776664 8888888888887653 68999999999999999999 58899999999999 99999999999
Q ss_pred HHHHHhCCCCH
Q 020109 267 DQAVKSAPDDC 277 (331)
Q Consensus 267 erALeldPdna 277 (331)
++|+.++|.++
T Consensus 477 ~~A~~L~P~~p 487 (517)
T PRK10153 477 STAFNLRPGEN 487 (517)
T ss_pred HHHHhcCCCCc
Confidence 99999999655
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=1.1e-05 Score=82.10 Aligned_cols=64 Identities=11% Similarity=-0.011 Sum_probs=60.9
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHcCCchHHHhhhh
Q 020109 237 ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY---VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 237 ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~---vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+|+++..+.++|.+++. .|+|++|+..|++||+++|++.. +|+++|.+|..+|+.++|...++
T Consensus 70 ~dP~~a~a~~NLG~AL~~-lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~Lr 136 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFS-KGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLR 136 (453)
T ss_pred CCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 689999999999999999 99999999999999999999985 49999999999999999998776
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.6e-05 Score=74.86 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=95.3
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d-~~vL~~lA~ll~~~~Gd~de 261 (331)
+....+.++|+..+.+|++.||++..+-..+|.+. ...|+|++|.+.++++++.||+. ++++..+..+|.+ .|+.++
T Consensus 190 ~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~-~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~-lg~~~~ 267 (389)
T COG2956 190 ALASSDVDRARELLKKALQADKKCVRASIILGRVE-LAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQ-LGKPAE 267 (389)
T ss_pred HhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH-HhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHH-hCCHHH
Confidence 34457889999999999999999999999999996 47899999999999999999985 5688889999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+.++.++.+..+.....+.-+-.+...-|..+-.....+
T Consensus 268 ~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 268 GLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHH
Confidence 9999999999999666555444444444454433333444
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00022 Score=57.54 Aligned_cols=118 Identities=26% Similarity=0.294 Sum_probs=74.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcC
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPG---NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHK 257 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~---npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-d~~vL~~lA~ll~~~~G 257 (331)
.+...++++.|..+|.+++..+|. ....+..++..+ ...+++++|...+.+++...+. ...++..++..+.. .+
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 216 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALL-EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLK-LG 216 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH-HHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHH-cc
Confidence 566667777777777777666652 333333333332 2456777777777777777777 56666777777766 67
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++++|+.++.+++...|.....+..++..+...++.+++....+
T Consensus 217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (291)
T COG0457 217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALE 260 (291)
T ss_pred cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence 77777777777777777656666666666665555555554443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00018 Score=58.02 Aligned_cols=126 Identities=21% Similarity=0.145 Sum_probs=100.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR-FLKEVRGDFAKAEELCGRAILANP---SDGNILSLYA 249 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~-lLy~~~GdyeeAee~~erAL~ldP---~d~~vL~~lA 249 (331)
....+.+.++...+++..|...+.+++..++.+......+.. ++ ...+++++|..+|++++..+| .....+..++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (291)
T COG0457 96 EALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL-YELGDYEEALELYEKALELDPELNELAEALLALG 174 (291)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH-HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhh
Confidence 345667788888888999999999999988887554444444 43 468999999999999988877 3455555556
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPD-DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPd-na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+.. .+++++|+..+.++++..+. ....+..++.++...++++++.....
T Consensus 175 ~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 226 (291)
T COG0457 175 ALLEA-LGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYE 226 (291)
T ss_pred hHHHH-hcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHH
Confidence 65666 88999999999999999998 68999999999999998888886554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.06 E-value=4.5e-05 Score=85.30 Aligned_cols=124 Identities=19% Similarity=0.203 Sum_probs=114.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d~~vL~~lA~ll~ 253 (331)
+.-+..+|.+-.++++|.++|+.+++..-+....|..||.++. .+.+.++|...+.+|++--|. +..+....|.+-|
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl-~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLL-RQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHh-cccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 4456778999999999999999999999999999999999985 567778999999999999998 8889999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+ .||.+++..+|+-.|..+|...++|..|.+.-.+.++.+.....+|
T Consensus 1612 k-~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1612 K-YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred h-cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHH
Confidence 9 9999999999999999999999999999999999999888877665
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00014 Score=65.97 Aligned_cols=122 Identities=16% Similarity=0.086 Sum_probs=94.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVR----------GDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lLy~~~----------GdyeeAee~~erAL~ldP~d 241 (331)
....+|..+...++++.|+..|++.+...|+++ .+++..|.+.+... ....+|...|+..|...|+.
T Consensus 44 A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 44 AQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 356789999999999999999999999999875 46666676654332 23357999999999999998
Q ss_pred HHHHH-----------------HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCchHHH
Q 020109 242 GNILS-----------------LYADLIWQAHKDASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 242 ~~vL~-----------------~lA~ll~~~~Gd~deAieyferALeldPdna---~vl~~lA~~L~klG~~eEa~ 297 (331)
+.+-. ..|.++++ .+.+..|+..|+.+++..|+.. .++..++..+.++|..+.+.
T Consensus 124 ~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~-~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 124 EYAEEAKKRLAELRNRLAEHELYIARFYYK-RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 77632 13788888 9999999999999999999776 45788899999999988544
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.01 E-value=9.6e-06 Score=61.56 Aligned_cols=61 Identities=20% Similarity=0.165 Sum_probs=50.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh---CC-CC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA---NP-GN---ALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel---dP-~n---peal~~yA~lLy~~~GdyeeAee~~erAL~l 237 (331)
..|+|.+|...+++++|+.+|++++.+ .+ .+ ..++.++|.++. ..|++++|++++++|+++
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYY-RLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhh
Confidence 578999999999999999999999976 22 22 446778898865 789999999999999986
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00027 Score=66.33 Aligned_cols=125 Identities=11% Similarity=0.015 Sum_probs=99.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHc--------------CC---HHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEVR--------------GD---FAKAEELCGRAI 235 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npe---al~~yA~lLy~~~--------------Gd---yeeAee~~erAL 235 (331)
..++|..|.+.+++++|+.+|++.++.+|+++. +++.+|.+.+... .| ..+|.+.|++.|
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li 151 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV 151 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH
Confidence 578999999999999999999999999998754 4566665421110 12 246889999999
Q ss_pred HhCCCCHHHHHH-----------------HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCchH
Q 020109 236 LANPSDGNILSL-----------------YADLIWQAHKDASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 236 ~ldP~d~~vL~~-----------------lA~ll~~~~Gd~deAieyferALeldPdna---~vl~~lA~~L~klG~~eE 295 (331)
...|+..++-.. .|.++++ .+.+.-|+.-++.+++..|+.. ++++.+...|..+|..++
T Consensus 152 ~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~-~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~ 230 (243)
T PRK10866 152 RGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTK-RGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQ 230 (243)
T ss_pred HHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHH
Confidence 999987665222 3678888 9999999999999999998554 678888999999999999
Q ss_pred HHhhhh
Q 020109 296 EEQDNE 301 (331)
Q Consensus 296 a~~~~e 301 (331)
|.....
T Consensus 231 a~~~~~ 236 (243)
T PRK10866 231 ADKVAK 236 (243)
T ss_pred HHHHHH
Confidence 986554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00013 Score=67.27 Aligned_cols=122 Identities=19% Similarity=0.125 Sum_probs=106.1
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIE-ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYADLIW 253 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALe-ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d~~vL~~lA~ll~ 253 (331)
+-+|..+.+.|++.+|..+|++++. +...++..+..+|+..+ ..++...|...+++..+.+|. .|+....+|..+.
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf-a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la 171 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF-AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA 171 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH-hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence 4477888899999999999999987 57788999999998876 579999999999999999986 5667788899998
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|+++.|+..|+.++...| .+.....|+.++.++|+..|+.....
T Consensus 172 a-~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~ 217 (251)
T COG4700 172 A-QGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYV 217 (251)
T ss_pred h-cCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 8 9999999999999999999 56677889999999999888876544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.0001 Score=64.62 Aligned_cols=105 Identities=15% Similarity=0.095 Sum_probs=81.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~---~vL~~l 248 (331)
.+++-|.-..+.++|++|++.|+......|.. +.+...++.+++ ..+++++|...+++-|+++|.++ ++++..
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy-~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYY-KQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 35666777788889999999999988888875 345566777765 57899999999999999988765 456677
Q ss_pred HHHHHHHcCC---------------HHHHHHHHHHHHHhCCCCHHHHH
Q 020109 249 ADLIWQAHKD---------------ASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 249 A~ll~~~~Gd---------------~deAieyferALeldPdna~vl~ 281 (331)
|...+. ..+ ..+|...|++.|+..|++.++--
T Consensus 91 gL~~~~-~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 91 GLSYYE-QDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HHHHHH-HhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 777777 555 77888889999999998876543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=2.3e-05 Score=74.43 Aligned_cols=127 Identities=20% Similarity=0.154 Sum_probs=92.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CC----HH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANP--GN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SD----GN 243 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP--~n----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP--~d----~~ 243 (331)
..--|+.|...+++++|..+|.++....- ++ ...+...+.+ + ...++++|.++|++|+.+-- .+ +.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~-k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~ 115 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-Y-KKGDPDEAIECYEKAIEIYREAGRFSQAAK 115 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-H-HHTTHHHHHHHHHHHHHHHHHCT-HHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-H-HhhCHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 44567788899999999999999987632 22 2233344445 4 34699999999999987632 22 44
Q ss_pred HHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 244 ILSLYADLIWQAH-KDASRAESYFDQAVKSAP--DD----CYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 244 vL~~lA~ll~~~~-Gd~deAieyferALeldP--dn----a~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
++..+|.++.. . +++++|+++|++|+++.- +. ..++..++.++.+.+++++|...+++...
T Consensus 116 ~~~~lA~~ye~-~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 116 CLKELAEIYEE-QLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp HHHHHHHHHCC-TT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67788999888 7 899999999999999843 22 35677899999999999999998886554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.9e-05 Score=54.74 Aligned_cols=41 Identities=20% Similarity=0.148 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYA 284 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA 284 (331)
.++..+|.+++. .|++++|+++|+++++.+|+++.+|..++
T Consensus 2 ~~~~~la~~~~~-~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRR-LGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 344555555555 55555555555555555555555555554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=7.6e-05 Score=75.37 Aligned_cols=118 Identities=15% Similarity=0.100 Sum_probs=100.6
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
.+...+++..|..+-+|+|+.||.+-.++..-|.++- ..++.++|.-.|+.|+.+.|.+.+.+..+-..|.. .+++.|
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~-~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA-~~~~kE 386 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLI-ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA-QKRFKE 386 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHH-hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh-hchHHH
Confidence 3445578999999999999999999999999998874 68999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHH-HHHHHcCC-chHHHhhhh
Q 020109 262 AESYFDQAVKSAPDDCYVLASYA-KFLWDAGE-DEEEEQDNE 301 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA-~~L~klG~-~eEa~~~~e 301 (331)
|...-..+++.-|.++..+--+| .++.-.-. .++|.+-.+
T Consensus 387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 99999999999999999888885 55544433 444544333
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00021 Score=70.96 Aligned_cols=121 Identities=16% Similarity=0.180 Sum_probs=104.5
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHH-----------HHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFL-----------KEVRGDFAKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lL-----------y~~~GdyeeAee~~erAL~ldP~d~~vL 245 (331)
|..+.++|.+++|+.-|.+.|+.+|++. ++...++.+- +-..||+..|+++....|++.|=|+..+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~ 192 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLR 192 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHH
Confidence 3567899999999999999999999654 4444444321 1124799999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
...|.+|.. .|+...|+.-+.++-++.-++...++.+..+++..|+.++.-.+.+
T Consensus 193 ~~Rakc~i~-~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iR 247 (504)
T KOG0624|consen 193 QARAKCYIA-EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIR 247 (504)
T ss_pred HHHHHHHHh-cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 999999999 9999999999999999999999999999999999999988876554
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.91 E-value=1.4e-05 Score=81.26 Aligned_cols=113 Identities=18% Similarity=0.080 Sum_probs=101.0
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
|-|+-++..+.|+.|+..|-|||+++|+++.++.+-|..+ ...+++..|..-+.+||+++|....+++.-|.+... .+
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~-lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~-l~ 86 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAH-LKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMA-LG 86 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhh-eeechhhhHHHHHHhhhhcCchhhheeeeccHHHHh-HH
Confidence 4456667779999999999999999999999998888553 468999999999999999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
++.+|...|+....+.|++.++...+..|-...-+
T Consensus 87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 87 EFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998888777666544
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=9.5e-05 Score=78.23 Aligned_cols=132 Identities=11% Similarity=0.046 Sum_probs=90.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CC-------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEA--NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---NP------- 239 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALel--dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l---dP------- 239 (331)
|......+...|.+.|+.++|.+.|+++++. .|+..- +..+...+. ..|+.++|.++|+...+. .|
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~-~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~ 467 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVT-FLAVLSACR-YSGLSEQGWEIFQSMSENHRIKPRAMHYAC 467 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHH-HHHHHHHHh-cCCcHHHHHHHHHHHHHhcCCCCCccchHh
Confidence 3334567788888888889999999888774 343222 222222222 345555555555555432 12
Q ss_pred ------------------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchH
Q 020109 240 ------------------------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 240 ------------------------~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eE 295 (331)
-+..+|..+...+.. .|+++.|+..+++++++.|++...|..+..+|.+.|++++
T Consensus 468 li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~-~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~ 546 (697)
T PLN03081 468 MIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRI-HKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAE 546 (697)
T ss_pred HHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHH
Confidence 133445556666666 7888888888888999999998899999999999999999
Q ss_pred HHhhhhhcccc
Q 020109 296 EEQDNEEGQHQ 306 (331)
Q Consensus 296 a~~~~e~~~~~ 306 (331)
|.+..+++..+
T Consensus 547 A~~v~~~m~~~ 557 (697)
T PLN03081 547 AAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHHHc
Confidence 99888766554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.4e-05 Score=72.46 Aligned_cols=104 Identities=20% Similarity=0.175 Sum_probs=84.1
Q ss_pred ccccHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 175 FSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 175 ~~~N~A~~y~~----~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
...++|..+.. .+++.+|..+|+......+.++..++.+|.+. ...|+|++|++.+++|+..+|+|++++.+++.
T Consensus 165 ~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~-l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv 243 (290)
T PF04733_consen 165 ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCH-LQLGHYEEAEELLEEALEKDPNDPDTLANLIV 243 (290)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHH-HHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 35555553333 24689999999998888888999999999886 47899999999999999999999999999999
Q ss_pred HHHHHcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 020109 251 LIWQAHKDA-SRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 251 ll~~~~Gd~-deAieyferALeldPdna~vl 280 (331)
+... .|+. +.+.+++.++.+.+|+.+.+.
T Consensus 244 ~~~~-~gk~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 244 CSLH-LGKPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp HHHH-TT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred HHHH-hCCChhHHHHHHHHHHHhCCCChHHH
Confidence 9888 8887 778899999999999988664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00038 Score=77.91 Aligned_cols=121 Identities=15% Similarity=0.065 Sum_probs=58.8
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAILA--NPSDGNILSLYADLIWQA 255 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP-~npeal~~yA~lLy~~~GdyeeAee~~erAL~l--dP~d~~vL~~lA~ll~~~ 255 (331)
+...|.+.|++++|.+.|+++.+.+. .++..|..+...+. ..|++++|.++|++..+. .|+ ...+..+...+.+
T Consensus 585 LI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~-k~G~~deAl~lf~eM~~~Gv~PD-~~TynsLI~a~~k- 661 (1060)
T PLN03218 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS-QKGDWDFALSIYDDMKKKGVKPD-EVFFSALVDVAGH- 661 (1060)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh-
Confidence 33444455555555555555555442 23333333333322 345555555555555443 222 3344444444454
Q ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 256 HKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 256 ~Gd~deAieyferALeld-Pdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.|++++|.++|+++++.. +.+..++..+...|.+.|+.++|...+++
T Consensus 662 ~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~e 709 (1060)
T PLN03218 662 AGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYED 709 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 555555555555555543 23445555555555555555555555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00017 Score=77.99 Aligned_cols=124 Identities=13% Similarity=0.085 Sum_probs=86.5
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+-..|.+.|..++|..+|+.+.+..+- +...+..+..++. ..|++++|++++++. .+.|+ +.+|..+-..+..
T Consensus 594 ~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~-r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~- 669 (857)
T PLN03077 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG-RAGKLTEAYNFINKM-PITPD-PAVWGALLNACRI- 669 (857)
T ss_pred HHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH-hCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHH-
Confidence 3445566666777777777776644322 2344555555554 467777777777764 24454 4455555555555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
.++.+.|+...+++++++|++...+..++.+|...|+++++.+..+++..
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 78888888888889999999999999999999999999999987765544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00015 Score=74.53 Aligned_cols=111 Identities=17% Similarity=0.072 Sum_probs=91.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------------------C----
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS---------------------D---- 241 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~---------------------d---- 241 (331)
.+..+-+++-++||+++|+.+.++..+|.= ......+|+++|++|++.... +
T Consensus 182 Rnp~aRIkaA~eALei~pdCAdAYILLAEE---eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~ 258 (539)
T PF04184_consen 182 RNPQARIKAAKEALEINPDCADAYILLAEE---EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVL 258 (539)
T ss_pred CCHHHHHHHHHHHHHhhhhhhHHHhhcccc---cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchh
Confidence 567888889999999999999998888742 235567788888887754330 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++...+|.++|+ .|+.+||++.|..+++..| ++..+++++..+|...+.|.|+...+.
T Consensus 259 ~y~KrRLAmCark-lGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 259 VYAKRRLAMCARK-LGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhHHHHHHHHHH-hCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4566789999999 9999999999999999988 466799999999999999999987665
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00043 Score=60.77 Aligned_cols=93 Identities=14% Similarity=0.084 Sum_probs=75.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHc
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----NILSLYADLIWQAH 256 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~----~vL~~lA~ll~~~~ 256 (331)
..+.+.++.+.|++.|.++|.+-|.++.++++-|+.+ +.+++.++|..-+++|+++.-... .++..-|.+|.. .
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~-RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl-~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQAL-RLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL-L 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHH-HHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH-h
Confidence 3444557889999999999999999999999999985 578999999999999998876543 345667888888 8
Q ss_pred CCHHHHHHHHHHHHHhCCC
Q 020109 257 KDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 257 Gd~deAieyferALeldPd 275 (331)
|+-+.|..-|+.|-++...
T Consensus 129 g~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSK 147 (175)
T ss_pred CchHHHHHhHHHHHHhCCH
Confidence 9999999888877666543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.4e-05 Score=69.61 Aligned_cols=122 Identities=8% Similarity=0.034 Sum_probs=97.9
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
+|-..|-..-|..-|.++|.++|+-|++++.++..+. ..++++.|.+.|+..+++||.+-++..+.|..++- .|++.-
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~-~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY-~gR~~L 151 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY-GGRYKL 151 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHH-hcccchHHHHHhhhHhccCCcchHHHhccceeeee-cCchHh
Confidence 4455566788999999999999999999988888765 68999999999999999999999999999999888 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccc
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQ 306 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~ 306 (331)
|.+-+.+-.+.+|.++.--..+-..-. .-++++|...+.++..+
T Consensus 152 Aq~d~~~fYQ~D~~DPfR~LWLYl~E~-k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 152 AQDDLLAFYQDDPNDPFRSLWLYLNEQ-KLDPKQAKTNLKQRAEK 195 (297)
T ss_pred hHHHHHHHHhcCCCChHHHHHHHHHHh-hCCHHHHHHHHHHHHHh
Confidence 999999999999999854333322222 22566676665544443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.80 E-value=5.3e-05 Score=52.47 Aligned_cols=42 Identities=26% Similarity=0.223 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.++..||.++ ...|++++|+++|+++|+.+|+|+.++..+|.
T Consensus 2 ~~~~~la~~~-~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAY-RRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHH-HHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 4566666664 35677777777777777777777777666654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00059 Score=76.38 Aligned_cols=125 Identities=9% Similarity=0.007 Sum_probs=68.2
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILA----NPSDGNILSLYADL 251 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~l----dP~d~~vL~~lA~l 251 (331)
..+...|.+.|++++|..+|+++....-. |...+..+...+. ..|++++|.++|++.... .|+ ..++..+...
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~-k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~a 588 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACG-QSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKA 588 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHH
Confidence 34445555556666666666655543211 2333344444433 456666666666666542 333 3344445555
Q ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 252 IWQAHKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeld-Pdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
+.+ .|++++|+++|+++.+.+ +.+..+|..+...|.+.|+.++|...++++.
T Consensus 589 y~k-~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 589 CAN-AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHH-CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 555 666666666666666665 3455566666666666666666666655443
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00043 Score=73.33 Aligned_cols=125 Identities=10% Similarity=0.003 Sum_probs=90.1
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-SDGNILSLYADLIW 253 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP-~d~~vL~~lA~ll~ 253 (331)
....+...|.+.|++++|...|+++. +.|...|+.+...+. ..|++++|.++|++.....- -|...+..+..++.
T Consensus 261 ~~n~Li~~y~k~g~~~~A~~vf~~m~---~~~~vt~n~li~~y~-~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~ 336 (697)
T PLN03081 261 VSCALIDMYSKCGDIEDARCVFDGMP---EKTTVAWNSMLAGYA-LHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336 (697)
T ss_pred eHHHHHHHHHHCCCHHHHHHHHHhCC---CCChhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34456778888888888888888763 346666666666644 57888888888888866432 24456666666777
Q ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 254 QAHKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 254 ~~~Gd~deAieyferALeld-Pdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
+ .+++++|.+++..+++.. +.+..++..+...|.+.|+.++|...++++.
T Consensus 337 ~-~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~ 387 (697)
T PLN03081 337 R-LALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP 387 (697)
T ss_pred h-ccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC
Confidence 7 788888888888888776 4667777778888888888888887776543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=2.7e-05 Score=51.77 Aligned_cols=31 Identities=42% Similarity=0.624 Sum_probs=12.8
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 196 YEKMIEANPGNALLLGNYARFLKEVRGDFAKA 227 (331)
Q Consensus 196 yekALeldP~npeal~~yA~lLy~~~GdyeeA 227 (331)
|++||+++|+|+.++++||.++. ..|++++|
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~-~~g~~~~A 32 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYL-NQGDYEEA 32 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHH-HCcCHHhh
Confidence 34444444444444444444432 33444443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0004 Score=65.95 Aligned_cols=123 Identities=20% Similarity=0.180 Sum_probs=90.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh--CCCC----HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCC--CC----H
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA--NPGN----ALLLGNYARFLKEVR-GDFAKAEELCGRAILANP--SD----G 242 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel--dP~n----peal~~yA~lLy~~~-GdyeeAee~~erAL~ldP--~d----~ 242 (331)
+.+.+.+|.+. ++++|+.+|++|+.+ .-++ +..+..+|.++ +.. +++++|.++|++|+.+-. +. .
T Consensus 78 ~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~y-e~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~ 155 (282)
T PF14938_consen 78 YEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIY-EEQLGDYEKAIEYYQKAAELYEQEGSPHSAA 155 (282)
T ss_dssp HHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH-CCTT--HHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHCCChhhHH
Confidence 45677788777 999999999999997 3333 44567788885 456 899999999999987632 22 3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CH---HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD----DC---YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPd----na---~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.++.+ .++|++|++.|++.....-+ .. ..+...+.|++..|+...|...++
T Consensus 156 ~~~~~~A~l~~~-l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 156 ECLLKAADLYAR-LGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 356678999999 99999999999999986421 11 345677889999999988887776
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0002 Score=68.97 Aligned_cols=130 Identities=17% Similarity=0.097 Sum_probs=111.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----hC--CCCHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKEVRGDFAKAEELCGRAIL----AN--PSDGNILSL 247 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeld-P~npeal~~yA~lLy~~~GdyeeAee~~erAL~----ld--P~d~~vL~~ 247 (331)
.++-|++|+.-.+.|.-....|.+.++.+ |.+|.....++.+.. +.||.+-|..||++.-+ ++ ..+..|...
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~M-Q~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISM-QIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 35678888888999999999999999999 568888899998864 68999999999995432 22 346677888
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccc
Q 020109 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQ 306 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~ 306 (331)
.+.++.- .+++..|...|++++..||.++.+..+.|.|++.+|+..+|.++.+++-.+
T Consensus 258 ~a~i~lg-~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 258 SAFLHLG-QNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhhheec-ccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 8888888 899999999999999999999999999999999999999999998855444
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.64 E-value=5.7e-05 Score=50.18 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=18.1
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 231 CGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 231 ~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
|++||+++|+|+.++..||.++.. .|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~-~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLN-QGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHH-CcCHHhhc
Confidence 455555555555555555555555 55555554
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00047 Score=65.99 Aligned_cols=91 Identities=24% Similarity=0.229 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 020109 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASY 283 (331)
Q Consensus 210 l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~---~vL~~lA~ll~~~~Gd~deAieyferALeldPdn---a~vl~~l 283 (331)
.|+.|.-++ ..|+|..|+.-|..-|+.-|+.. .+++-||.+++. +|+|++|..+|.++++..|+. ++.++.+
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~-qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYA-QGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHh-cccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 555565555 57999999999999999999864 467888999999 999999999999999998844 5889999
Q ss_pred HHHHHHcCCchHHHhhhhh
Q 020109 284 AKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 284 A~~L~klG~~eEa~~~~e~ 302 (331)
|.++.++++.++|-..+++
T Consensus 222 g~~~~~l~~~d~A~atl~q 240 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQ 240 (262)
T ss_pred HHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999883
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0004 Score=66.28 Aligned_cols=93 Identities=23% Similarity=0.320 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
.+|..|..++.+ .+..+.|..+|.+|++..+....++..+|.+-+...++.+.|...|+++++..|.+..+|..|..++
T Consensus 2 ~v~i~~m~~~~r-~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRR-TEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 467788888754 4569999999999997777788999999999776357777799999999999999999999999999
Q ss_pred HHcCCchHHHhhhh
Q 020109 288 WDAGEDEEEEQDNE 301 (331)
Q Consensus 288 ~klG~~eEa~~~~e 301 (331)
...++.+.+...+|
T Consensus 81 ~~~~d~~~aR~lfe 94 (280)
T PF05843_consen 81 IKLNDINNARALFE 94 (280)
T ss_dssp HHTT-HHHHHHHHH
T ss_pred HHhCcHHHHHHHHH
Confidence 99999998887776
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00061 Score=59.72 Aligned_cols=85 Identities=14% Similarity=0.082 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC---YV 279 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL~~lA~ll~~~~Gd~deAieyferALeldPdna---~v 279 (331)
.+..++.-|.-.. ..|+|.+|++.|+.+...-|-.++ +...++.++++ .+++++|+..+++-+++.|.++ ++
T Consensus 9 ~~~~ly~~a~~~l-~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~-~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 9 SPQELYQEAQEAL-QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYK-QGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred CHHHHHHHHHHHH-HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 4556677776654 689999999999999999997654 67789999999 9999999999999999999555 78
Q ss_pred HHHHHHHHHHcCC
Q 020109 280 LASYAKFLWDAGE 292 (331)
Q Consensus 280 l~~lA~~L~klG~ 292 (331)
++..|.+++.+..
T Consensus 87 ~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 87 YYMRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHHHhh
Confidence 8888998888865
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0012 Score=71.57 Aligned_cols=121 Identities=13% Similarity=0.034 Sum_probs=94.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL--ANPSDGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~--ldP~d~~vL~~lA~ll~ 253 (331)
...+-..|.+.|++++|...|+.+ +.|...|+.+...+. ..|+.++|.++|++.++ ..|+...+...+ ..+.
T Consensus 527 ~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~-~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll-~a~~ 600 (857)
T PLN03077 527 PNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYV-AHGKGSMAVELFNRMVESGVNPDEVTFISLL-CACS 600 (857)
T ss_pred chHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCcccHHHHH-HHHh
Confidence 345667888999999999999886 456777777776654 67999999999999887 456665554433 4566
Q ss_pred HHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 254 QAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+ .|+.++|.++|+++.+..+ .+...|..+..+|.+.|+.+||....+++
T Consensus 601 ~-~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 601 R-SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred h-cChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 6 8999999999999985532 36678899999999999999999888744
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00016 Score=79.06 Aligned_cols=109 Identities=11% Similarity=0.032 Sum_probs=94.3
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
+-+|.+.++.-+|+..|+.||+.+|++...|..++.++ ...|.|.-|.+.|.+|..++|.+.++.+-.|...-. .|+|
T Consensus 569 G~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY-~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd-~GkY 646 (1238)
T KOG1127|consen 569 GPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAY-PESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECD-NGKY 646 (1238)
T ss_pred cccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHH-HhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHH-hhhH
Confidence 34677889999999999999999999999999999995 578999999999999999999999999999998888 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.+|+..+...+......--+...++.++.+.
T Consensus 647 keald~l~~ii~~~s~e~~~q~gLaE~~ir~ 677 (1238)
T KOG1127|consen 647 KEALDALGLIIYAFSLERTGQNGLAESVIRD 677 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 9999999988888665555555555555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00022 Score=45.61 Aligned_cols=32 Identities=19% Similarity=0.346 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPd 275 (331)
.++..+|.+++. .|++++|+++|+++++++|+
T Consensus 2 ~~~~~lg~~~~~-~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQ-LGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHH-hCCHHHHHHHHHHHHHHCcC
Confidence 344555555555 55555555555555555554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0012 Score=63.30 Aligned_cols=98 Identities=15% Similarity=0.183 Sum_probs=82.3
Q ss_pred HHhCCCcHHHHHHHHHHHH--------hCCCCHHH----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIE--------ANPGNALL----------LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALe--------ldP~npea----------l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v 244 (331)
+++.++|.+|..+|+.||. ..|.+++. +.||++++ ...++|-++++.+...|..+|.|..+
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~-L~~~e~yevleh~seiL~~~~~nvKA 266 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCL-LKKEEYYEVLEHCSEILRHHPGNVKA 266 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHH-hhHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4467899999999998876 36777654 56888885 47899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
++.-|.+... .=+.++|..-|.++|+++|.-..+...
T Consensus 267 ~frRakAhaa-~Wn~~eA~~D~~~vL~ldpslasvVsr 303 (329)
T KOG0545|consen 267 YFRRAKAHAA-VWNEAEAKADLQKVLELDPSLASVVSR 303 (329)
T ss_pred HHHHHHHHHh-hcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence 9999988877 788999999999999999966655443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0011 Score=68.29 Aligned_cols=122 Identities=20% Similarity=0.331 Sum_probs=103.5
Q ss_pred ccHHHHHH-hCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 177 GSNNNYSN-NNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 177 ~N~A~~y~-~~gd~ekA~e~yekALeldP~n----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
-|||.+-. ..++.+.+...|+.+|.+=|.. +.+|..||.+.- .+.+...|.+.+..||-..|.+-.+ ..|-.+
T Consensus 369 inYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feI-Rq~~l~~ARkiLG~AIG~cPK~KlF-k~YIel 446 (677)
T KOG1915|consen 369 INYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEI-RQLNLTGARKILGNAIGKCPKDKLF-KGYIEL 446 (677)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH-HHcccHHHHHHHHHHhccCCchhHH-HHHHHH
Confidence 46665543 3478899999999999998864 667888998864 5789999999999999999998766 456666
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
-.+ .+++++...+|++-|+..|.+|.+|..+|.+-..+|+.+-|....+
T Consensus 447 Elq-L~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaife 495 (677)
T KOG1915|consen 447 ELQ-LREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFE 495 (677)
T ss_pred HHH-HhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 677 8999999999999999999999999999999999999988876654
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00033 Score=69.08 Aligned_cols=93 Identities=13% Similarity=0.109 Sum_probs=79.2
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNAL----LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npe----al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
|+.|++.++|..|..+|.+.|..+..|+. .++|-|.+.+ ..|+|-.|+.-+.+|++++|.+..+++.=|.+++.
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~-~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~e- 165 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQL-YLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLE- 165 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHH-
Confidence 56788889999999999999999776654 4456666654 46999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC
Q 020109 256 HKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 256 ~Gd~deAieyferALeldP 274 (331)
..++++|..+.+..++++-
T Consensus 166 Le~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 166 LERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred HHHHHHHHHHHhhhhhhhH
Confidence 9998888888887776654
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0024 Score=60.83 Aligned_cols=126 Identities=16% Similarity=0.117 Sum_probs=88.6
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---IL 245 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL 245 (331)
-...++|=|.-....|++++|+.+|+++....|..+. +...++..+| ..++|++|+.++++-+.+.|.++. ++
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Y-k~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYY-KNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHH-hcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 4456888888888999999999999999999998654 5667777776 679999999999999999997654 44
Q ss_pred HHHHHHHHHHc----CC---HHHHHHHHHHHHHhCCCCHHH-----------------HHHHHHHHHHcCCchHHHh
Q 020109 246 SLYADLIWQAH----KD---ASRAESYFDQAVKSAPDDCYV-----------------LASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 246 ~~lA~ll~~~~----Gd---~deAieyferALeldPdna~v-----------------l~~lA~~L~klG~~eEa~~ 298 (331)
+..+...+... .| ..+|+.-|+..|+..|+..++ -..+|++|.+.|.+.-|+.
T Consensus 112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred HHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 44444443311 22 234556666666666655442 2345666666666665554
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00068 Score=67.71 Aligned_cols=119 Identities=11% Similarity=0.022 Sum_probs=79.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--------------HhCCC----
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--------------LANPS---- 240 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL--------------~ldP~---- 240 (331)
.|.|++..|+|++|...|.-+.+.+.-+.+.+.++|.+.+ ..|.|.+|.....+|- +++..
T Consensus 63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~ 141 (557)
T KOG3785|consen 63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRIL 141 (557)
T ss_pred HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHH
Confidence 4678899999999999999988888778888899987754 4577777766544431 11110
Q ss_pred --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 241 --------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 241 --------d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
-.+-...+|-+.+. .-.|++|++.|++.+.-+|+-..+...+|.||+++.-++-+-+.
T Consensus 142 ~fh~~LqD~~EdqLSLAsvhYm-R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqev 207 (557)
T KOG3785|consen 142 TFHSSLQDTLEDQLSLASVHYM-RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEV 207 (557)
T ss_pred HHHHHHhhhHHHHHhHHHHHHH-HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHH
Confidence 00111123344444 45677777777777777777777777777777777666555443
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00023 Score=69.74 Aligned_cols=125 Identities=10% Similarity=0.001 Sum_probs=101.0
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH--------------------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELC-------------------- 231 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~-------------------- 231 (331)
+...+..+|.||....+|..|..||++.-...|....+..-+|+.+|. .+.+..|....
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADALrV~~~~~D~~~L~~~~lqLqaAI 121 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADALRVAFLLLDNPALHSRVLQLQAAI 121 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 445577889999999999999999999999999988887777877763 34333332221
Q ss_pred ----------HHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 232 ----------GRAILANP--SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 232 ----------erAL~ldP--~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+-.++.-| +++.++...|-++++ .|++++|.+-|+.|++....++-+-++++.++++.+++..|-+
T Consensus 122 kYse~Dl~g~rsLveQlp~en~Ad~~in~gCllyk-egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk 199 (459)
T KOG4340|consen 122 KYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYK-EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALK 199 (459)
T ss_pred hcccccCcchHHHHHhccCCCccchhccchheeec-cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHH
Confidence 12223334 677788888999999 9999999999999999999999999999999999999998875
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0022 Score=69.11 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=95.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPS--D----GNI 244 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~np-----eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d----~~v 244 (331)
...++..+...+++++|..++++++...+... .++..++.++. ..|++++|..++++++..... + ..+
T Consensus 455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~-~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~ 533 (903)
T PRK04841 455 NALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHH-CKGELARALAMMQQTEQMARQHDVYHYALWS 533 (903)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 34567788889999999999999999655432 23455666654 689999999999999976432 1 245
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAP--------DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldP--------dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+..+|.+++. .|++++|+.++++++++.. ....++..++.+++..|++++|....+
T Consensus 534 ~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~ 597 (903)
T PRK04841 534 LLQQSEILFA-QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCAR 597 (903)
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 5677888898 9999999999999998732 123445677889999999999986665
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0017 Score=57.07 Aligned_cols=86 Identities=24% Similarity=0.294 Sum_probs=76.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHH
Q 020109 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD----CYVLASYAKFLWD 289 (331)
Q Consensus 214 A~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn----a~vl~~lA~~L~k 289 (331)
|..+. -.|+.+.|++.|.+||.+.|.++-++.+-|..+.. .|+.++|++-+++|+++.-+. +..+.+.|.+|..
T Consensus 50 ~vala-E~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RL-q~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl 127 (175)
T KOG4555|consen 50 AIALA-EAGDLDGALELFGQALCLAPERASAYNNRAQALRL-QGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRL 127 (175)
T ss_pred HHHHH-hccchHHHHHHHHHHHHhcccchHhhccHHHHHHH-cCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHH
Confidence 44444 36999999999999999999999999999999999 999999999999999997644 4568889999999
Q ss_pred cCCchHHHhhhh
Q 020109 290 AGEDEEEEQDNE 301 (331)
Q Consensus 290 lG~~eEa~~~~e 301 (331)
+|+.+.|..|++
T Consensus 128 ~g~dd~AR~DFe 139 (175)
T KOG4555|consen 128 LGNDDAARADFE 139 (175)
T ss_pred hCchHHHHHhHH
Confidence 999999998876
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0004 Score=44.38 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
+++++.+|.+++ ..|++++|+++|++|++++|+|
T Consensus 1 a~~~~~lg~~~~-~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYY-QLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCcCC
Confidence 456777777765 5788888888888888888875
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0025 Score=65.76 Aligned_cols=96 Identities=14% Similarity=0.272 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
.+-...|+.|+...+.|..+|.+|..+.. ..+.+.+-...|.++++..|+++++|...|.-.+...-+.+.|..+|.++
T Consensus 88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~k-k~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrg 166 (568)
T KOG2396|consen 88 NRIVFLYRRATNRFNGDVKLWLSYIAFCK-KKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRG 166 (568)
T ss_pred HHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence 57889999999999999999999998864 56779999999999999999999999999988888344499999999999
Q ss_pred HHhCCCCHHHHHHHHHH
Q 020109 270 VKSAPDDCYVLASYAKF 286 (331)
Q Consensus 270 LeldPdna~vl~~lA~~ 286 (331)
|+.+|+++.+|..+-++
T Consensus 167 LR~npdsp~Lw~eyfrm 183 (568)
T KOG2396|consen 167 LRFNPDSPKLWKEYFRM 183 (568)
T ss_pred hhcCCCChHHHHHHHHH
Confidence 99999999988876544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0032 Score=67.85 Aligned_cols=125 Identities=14% Similarity=0.106 Sum_probs=96.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--------C
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--------D 241 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~--n----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--------d 241 (331)
..+++..+...|++++|..++++++..... + ...+.++|.+++ ..|++++|..++++++.+... .
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 467788889999999999999999986432 1 234456777765 689999999999999886321 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP-----DDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldP-----dna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
...+..+|.+++. .|++++|..++.+++.... .....+..++.++...|++++|...+++
T Consensus 573 ~~~~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~ 637 (903)
T PRK04841 573 EFLLRIRAQLLWE-WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNR 637 (903)
T ss_pred HHHHHHHHHHHHH-hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3345577888888 8999999999999988743 1345566789999999999999866553
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00034 Score=45.16 Aligned_cols=31 Identities=23% Similarity=0.344 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPd 275 (331)
++..+|.+++. ++++++|+++|++|++++|+
T Consensus 3 ~~~~~g~~~~~-~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 3 AYYNLGNAYFQ-LGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-hCCchHHHHHHHHHHHHCcC
Confidence 44444555554 55555555555555555543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00024 Score=70.57 Aligned_cols=86 Identities=16% Similarity=0.085 Sum_probs=79.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 214 ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 214 A~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
|.-++ .+|.|++|+.||.+++.++|.|+.++.+.|.+|++ .+.|..|+.-...|+.++-....+|...+..-..+|+.
T Consensus 104 GN~yF-KQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk-~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 104 GNTYF-KQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLK-QKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhh-hccchhHHHHHhhhhhccCCCCccchhhHHHHHHH-HHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 44433 68999999999999999999999999999999999 99999999999999999998889999999999999999
Q ss_pred hHHHhhhh
Q 020109 294 EEEEQDNE 301 (331)
Q Consensus 294 eEa~~~~e 301 (331)
.||.+|+|
T Consensus 182 ~EAKkD~E 189 (536)
T KOG4648|consen 182 MEAKKDCE 189 (536)
T ss_pred HHHHHhHH
Confidence 99998887
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0022 Score=65.73 Aligned_cols=105 Identities=21% Similarity=0.185 Sum_probs=89.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~----d~~vL~~lA~ll~~~~Gd~deA 262 (331)
.+.+.|...++.+.+..|+.+.+++.-|.++. ..|+.++|.++|++|+..... ....+..+++++.- +.++++|
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~-~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~-~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLER-LKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMF-QHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHH-HchHHHH
Confidence 46689999999999999999999999999964 789999999999999853332 23346678999888 9999999
Q ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCc
Q 020109 263 ESYFDQAVKSAPD-DCYVLASYAKFLWDAGED 293 (331)
Q Consensus 263 ieyferALeldPd-na~vl~~lA~~L~klG~~ 293 (331)
.++|.++++.+.- .+...|..|.|+...++.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccc
Confidence 9999999998874 555667779999999998
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0022 Score=63.82 Aligned_cols=114 Identities=16% Similarity=0.126 Sum_probs=96.4
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCC---HHHHHHHHHHHHHHcCC
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSD---GNILSLYADLIWQAHKD 258 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l-dP~d---~~vL~~lA~ll~~~~Gd 258 (331)
+..+|++-+|...+++.|.-.|.+-.++..--.+++ ..|+...-...+++.+-. +|+- .++.-.||..+.. .|-
T Consensus 113 ~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~f-y~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E-~g~ 190 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHF-YNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEE-CGI 190 (491)
T ss_pred hhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHH-hccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHH-hcc
Confidence 344567788889999999999999887765444433 468888888999999977 7776 6777889999999 999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
|++|++..++|++++|.++++.-..++++.-.++..|+.+
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~e 230 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKE 230 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHH
Confidence 9999999999999999999999999999999999888864
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0004 Score=68.24 Aligned_cols=74 Identities=16% Similarity=0.231 Sum_probs=65.0
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
.|.|.-..+.|+.++|...|+.|+.++|.++.++..++.|. +..++.-+|.+||-+|+.++|.|-+++.+.+..
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~-E~~~~iv~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFR-EMHNEIVEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHH-HhhhhhHhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 45666677889999999999999999999999999999996 467999999999999999999999998876543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00052 Score=44.31 Aligned_cols=33 Identities=24% Similarity=0.254 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
.+|+++|.++. ..+++++|+++|++||+++|+|
T Consensus 2 ~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYF-QLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHH-HhCCchHHHHHHHHHHHHCcCC
Confidence 45666776653 5677777777777777777753
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0005 Score=64.79 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=77.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 218 KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 218 y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
|...|-+.-|..-|.+++.+.|+-|.++..+|..+.. .|+|+.|.+.|+-.++++|..-+++.+.|..++--|+++-|-
T Consensus 75 YDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~-a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq 153 (297)
T COG4785 75 YDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQ 153 (297)
T ss_pred hhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHh-cccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhH
Confidence 4456777889999999999999999999999999999 999999999999999999999999999999999999999998
Q ss_pred hhhh
Q 020109 298 QDNE 301 (331)
Q Consensus 298 ~~~e 301 (331)
.|..
T Consensus 154 ~d~~ 157 (297)
T COG4785 154 DDLL 157 (297)
T ss_pred HHHH
Confidence 7775
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0042 Score=64.07 Aligned_cols=121 Identities=17% Similarity=0.194 Sum_probs=103.7
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
-||.|-..++++..|...|++||..|-.+--.|..||.+- .......-|...+++|+.+=|.--..++-|...-.. .|
T Consensus 78 kYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~E-mknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~-Lg 155 (677)
T KOG1915|consen 78 KYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFE-MKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEM-LG 155 (677)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHH-HhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHH-hc
Confidence 3788999999999999999999999999999999999985 356788999999999999999988888888777666 88
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+..-|...|++=++..| +..+|..+..+-.+-.+.+-|..+.+
T Consensus 156 Ni~gaRqiferW~~w~P-~eqaW~sfI~fElRykeieraR~IYe 198 (677)
T KOG1915|consen 156 NIAGARQIFERWMEWEP-DEQAWLSFIKFELRYKEIERARSIYE 198 (677)
T ss_pred ccHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 99999999999888888 45677777788777777777776665
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.002 Score=60.23 Aligned_cols=85 Identities=19% Similarity=0.140 Sum_probs=75.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 220 VRGDFAKAEELCGRAILANPSDGN-----ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~-----vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
..|+|++|..-|..||...|.-+. .+.+-|.++++ ++..+.|++-..+||+++|.+..++...|.+|-+..+++
T Consensus 107 ~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iK-l~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~e 185 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIK-LRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYE 185 (271)
T ss_pred hcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHH-hhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHH
Confidence 579999999999999999997543 34556788888 999999999999999999999999999999999999999
Q ss_pred HHHhhhhhccc
Q 020109 295 EEEQDNEEGQH 305 (331)
Q Consensus 295 Ea~~~~e~~~~ 305 (331)
+|..|++.+..
T Consensus 186 ealeDyKki~E 196 (271)
T KOG4234|consen 186 EALEDYKKILE 196 (271)
T ss_pred HHHHHHHHHHH
Confidence 99998885443
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.001 Score=63.26 Aligned_cols=83 Identities=16% Similarity=0.105 Sum_probs=78.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
....|..|+.+|-+||.++|..+.++.+-|.++++ ..+++.+..--.+|++++|+....++.++.++.....+.+++..
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 35688999999999999999999999999999999 99999999999999999999999999999999999999999998
Q ss_pred hhhc
Q 020109 300 NEEG 303 (331)
Q Consensus 300 ~e~~ 303 (331)
+..-
T Consensus 101 Lqra 104 (284)
T KOG4642|consen 101 LQRA 104 (284)
T ss_pred HHHH
Confidence 8733
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.014 Score=49.36 Aligned_cols=105 Identities=14% Similarity=0.039 Sum_probs=48.1
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
....++.+.+...+++++.+-.++...-... ..........++.. ...++..++..+.. .|++++|
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------~~W~~~~r~~l~~~------~~~~~~~l~~~~~~-~~~~~~a 81 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD-------EEWVEPERERLREL------YLDALERLAEALLE-AGDYEEA 81 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------STTHHHHHHHHHHH------HHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------cHHHHHHHHHHHHH------HHHHHHHHHHHHHh-ccCHHHH
Confidence 3456677888899999888755432211000 00111111222222 11233344444444 5555555
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.++++++..+|.+-.++..+..+|...|+..+|...++
T Consensus 82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~ 120 (146)
T PF03704_consen 82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYE 120 (146)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 555555555555555555555555555555555554433
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.012 Score=54.57 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=99.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL-ANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~-ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
....++=|.+.+..-..+.+..-|.+..- +.+|..+. ..|++.+|+..|++++. +.-+|+..+..+|...+. .+++
T Consensus 64 ~a~~q~ldP~R~~Rea~~~~~~ApTvqnr-~rLa~al~-elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa-~~~~ 140 (251)
T COG4700 64 MALQQKLDPERHLREATEELAIAPTVQNR-YRLANALA-ELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFA-IQEF 140 (251)
T ss_pred HHHHHhcChhHHHHHHHHHHhhchhHHHH-HHHHHHHH-HhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHh-hccH
Confidence 34445556677777777888888876654 45777765 46999999999999985 556899999999999999 9999
Q ss_pred HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 260 SRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 260 deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..|...++...+.+| ..++....+++.|...|++++|+..+|
T Consensus 141 A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe 184 (251)
T COG4700 141 AAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFE 184 (251)
T ss_pred HHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHH
Confidence 999999999999998 677889999999999999999887665
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.002 Score=58.78 Aligned_cols=68 Identities=22% Similarity=0.220 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 224 FAKAEELCGRAILANPSDGNILSLYADLIWQAH----------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 224 yeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~----------Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
++.|.+.++.+...||.|++.|...|.++.. . .-+++|+.-|++||+++|+..++++.+|.+|...+.
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLE-LAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~ 84 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLE-LAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF 84 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHH-HHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHH-HHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence 5689999999999999999999999988866 4 335678888999999999999999999999998875
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0025 Score=62.61 Aligned_cols=117 Identities=13% Similarity=0.026 Sum_probs=97.1
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
+.+..+|+.|+.++.--.+.+|.+-..+..+|.++| ..+++..|..||++.-.+.|....+...+|.-+++ .+.+..|
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY-~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~-A~i~ADA 97 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYY-RLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK-ACIYADA 97 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-hcccHHH
Confidence 366789999999999999999999999999999988 56899999999999999999999999999998888 8888888
Q ss_pred HHHHHHH----------HH--------------------hCC--CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 263 ESYFDQA----------VK--------------------SAP--DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 263 ieyferA----------Le--------------------ldP--dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+....+. ++ --| +++++..+.|.++++.|++++|.+-.+
T Consensus 98 LrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 98 LRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 6554432 22 123 566778888888999999988875544
|
|
| >KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0023 Score=63.11 Aligned_cols=67 Identities=21% Similarity=0.289 Sum_probs=62.6
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
.+|+.++|..+|+-|++++|.++.++..+|.+... .++.-+|..+|-+|+.++|.+..++.+.++..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~-~~~iv~ADq~Y~~ALtisP~nseALvnR~RT~ 194 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREM-HNEIVEADQCYVKALTISPGNSEALVNRARTT 194 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHh-hhhhHhhhhhhheeeeeCCCchHHHhhhhccc
Confidence 58999999999999999999999999999999998 89999999999999999999999888776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.01 Score=62.37 Aligned_cols=115 Identities=15% Similarity=0.049 Sum_probs=88.4
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
--|+|.++.+..++|..+++ -.++.+..++-..|+++| ..++|++|...|+..++.+-++.+.......+...
T Consensus 84 EKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlY-rl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~--- 156 (652)
T KOG2376|consen 84 EKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLY-RLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA--- 156 (652)
T ss_pred HHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH---
Confidence 35778888899999999988 567777777788899988 47999999999999999888888876655544333
Q ss_pred CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPD-DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPd-na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
-.-.+. +.+.+...|+ ..+.+|+.|.++...|+|.+|++.++
T Consensus 157 a~l~~~--~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~ 199 (652)
T KOG2376|consen 157 AALQVQ--LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLE 199 (652)
T ss_pred HhhhHH--HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 111111 5666777775 66789999999999999999997654
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.012 Score=56.89 Aligned_cols=117 Identities=17% Similarity=0.080 Sum_probs=96.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLK---EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy---~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
..++.+..+++-|+...+++.+.|.+- .+..||..+- .-...+..|.-+|+..-...|-.+..+...|.+.+. +
T Consensus 144 VqI~lk~~r~d~A~~~lk~mq~ided~--tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~-~ 220 (299)
T KOG3081|consen 144 VQILLKMHRFDLAEKELKKMQQIDEDA--TLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQ-L 220 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccchHH--HHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHH-h
Confidence 346667788899999999998888653 3344554321 112468899999999999888899999999999999 9
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 257 KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 257 Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
+++++|+..++.|+..++.++.++.++..+-..+|...+....
T Consensus 221 ~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r 263 (299)
T KOG3081|consen 221 GRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTER 263 (299)
T ss_pred cCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHH
Confidence 9999999999999999999999999999999999999776643
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0078 Score=65.50 Aligned_cols=109 Identities=13% Similarity=0.020 Sum_probs=97.2
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAiey 265 (331)
.+++.+|.....+.++..|+.+.+...-|..+. ..|..++|..+++..-..-++|-..+..+-.+|.+ .+++++|...
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~-r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d-~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLF-RLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRD-LGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHH-HhhhhHHHHH
Confidence 468899999999999999999888888888875 57999999999998888888999999999999999 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 266 FDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 266 ferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
|+++++.+|. -..++.+=.+|.+.+.|.+.-
T Consensus 100 Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 100 YERANQKYPS-EELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999998 888888888888888775543
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.028 Score=56.53 Aligned_cols=115 Identities=16% Similarity=0.040 Sum_probs=94.0
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA-~lLy~~~GdyeeAee~~erAL~ldP~-d~~vL~~lA~ll~~~~Gd~de 261 (331)
.-.|+|.+|+....++-+..+. |...+..| .. ....||+++|..|..+|-+..++ ...+....+.++.. .+|+..
T Consensus 95 l~eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~A-A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~-~~d~~a 171 (400)
T COG3071 95 LFEGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEA-AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLN-RRDYPA 171 (400)
T ss_pred HhcCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHH-HHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHh-CCCchh
Confidence 3458999999999886555554 44444444 55 45789999999999999998544 45577788999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|..-++++++..|.++.++.-...+|.+.|++.+....+.
T Consensus 172 A~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~ 211 (400)
T COG3071 172 ARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILP 211 (400)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHH
Confidence 9999999999999999999999999999999988875444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0023 Score=41.05 Aligned_cols=30 Identities=23% Similarity=0.283 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
++..+|.++.. .|++++|+++|+++++++|
T Consensus 3 ~~~~lg~~y~~-~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQ-LGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHH-TTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHhhCC
Confidence 44555555555 5555555555555555555
|
... |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.038 Score=52.46 Aligned_cols=116 Identities=16% Similarity=0.125 Sum_probs=92.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG----NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----------- 240 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~----npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~----------- 240 (331)
.-.+++...+.|.++.|..++.++...++. .+.+...+|.+++ ..|+..+|...++..+.....
T Consensus 149 ~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw-~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~ 227 (352)
T PF02259_consen 149 WLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLW-AQGEQEEAIQKLRELLKCRLSKNIDSISNAEL 227 (352)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhhccccccHHHH
Confidence 457889999999999999999999987632 5778888999998 689999999999888871111
Q ss_pred -----------------------CHHHHHHHHHHHHHHc------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 241 -----------------------DGNILSLYADLIWQAH------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 241 -----------------------d~~vL~~lA~ll~~~~------Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
.+.++..+|..... . ++.++++.+|.+|++++|....+|+.+|.++.+.=
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~ 306 (352)
T PF02259_consen 228 KSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDE-LYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLL 306 (352)
T ss_pred hhccccccccccccchhhhhHHHHHHHHHHHHHHHHh-hccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHH
Confidence 12334455555555 5 88999999999999999999999999999988774
Q ss_pred Cc
Q 020109 292 ED 293 (331)
Q Consensus 292 ~~ 293 (331)
+.
T Consensus 307 ~~ 308 (352)
T PF02259_consen 307 ES 308 (352)
T ss_pred Hh
Confidence 43
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.011 Score=56.74 Aligned_cols=88 Identities=15% Similarity=0.129 Sum_probs=73.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--------HhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 212 NYARFLKEVRGDFAKAEELCGRAI--------LANPS----------DGNILSLYADLIWQAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 212 ~yA~lLy~~~GdyeeAee~~erAL--------~ldP~----------d~~vL~~lA~ll~~~~Gd~deAieyferALeld 273 (331)
.-|.-+| ..++|.+|...|+.|| +..|. +...+.+|+.+++. .++|-++++.....|+..
T Consensus 183 q~GN~lf-k~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~-~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 183 QEGNRLF-KLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLK-KEEYYEVLEHCSEILRHH 260 (329)
T ss_pred Hhhhhhh-hhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhh-HHHHHHHHHHHHHHHhcC
Confidence 3344445 4689999999998886 23444 34456789999999 999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 274 PDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 274 Pdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.|..+++..|.++....+.+||..|+.
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~ 288 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQ 288 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHH
Confidence 9999999999999999999999998875
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0066 Score=63.93 Aligned_cols=111 Identities=20% Similarity=0.061 Sum_probs=92.0
Q ss_pred cccHHH-HHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 176 SGSNNN-YSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~-~y~~~gd~ekA~e~yekALeldP~npe-al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
-.|.|- ++..+|+-..|.+|++.|+...|.... -+.++|.++- .-+-...|-.++.++|.++-..|..++.+|..++
T Consensus 609 ~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~-~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l 687 (886)
T KOG4507|consen 609 ILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLI-HYGLHLDATKLLLQALAINSSEPLTFLSLGNAYL 687 (886)
T ss_pred EeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHH-HhhhhccHHHHHHHHHhhcccCchHHHhcchhHH
Confidence 334443 445678889999999999999997544 4678898864 4567788999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
. ..+.+.|++.|.+|++++|+++.....+-.+-.
T Consensus 688 ~-l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 688 A-LKNISGALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred H-HhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 8 999999999999999999999987766654443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.025 Score=54.70 Aligned_cols=90 Identities=22% Similarity=0.237 Sum_probs=79.0
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH-HHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR-AESYF 266 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de-Aieyf 266 (331)
.+..|-.+|+.+-+.-|-++..+.+.|.+. ...++|++|+..++.||..++++|+++.++-.+... .|.-.+ -..++
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~-l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~-~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCH-LQLGRYEEAESLLEEALDKDAKDPETLANLIVLALH-LGKDAEVTERNL 265 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHH-HHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH-hCCChHHHHHHH
Confidence 578999999999998888899999999886 468999999999999999999999999999988888 665544 56888
Q ss_pred HHHHHhCCCCHHH
Q 020109 267 DQAVKSAPDDCYV 279 (331)
Q Consensus 267 erALeldPdna~v 279 (331)
.|.....|+.+.+
T Consensus 266 ~QLk~~~p~h~~v 278 (299)
T KOG3081|consen 266 SQLKLSHPEHPFV 278 (299)
T ss_pred HHHHhcCCcchHH
Confidence 9999999988865
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.024 Score=64.38 Aligned_cols=107 Identities=12% Similarity=0.214 Sum_probs=94.7
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
...-||.++..+++-+.|...+.+||+--|. +.++....|++-| ..||.+++..+|+-.+...|.-.++|..|.+.-
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF-k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~e 1644 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF-KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDME 1644 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh-hcCCchhhHHHHHHHHhhCccchhHHHHHHHHH
Confidence 3456899999999999999999999999998 7889999999987 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 020109 253 WQAHKDASRAESYFDQAVKSA--PDDCYVLASY 283 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeld--Pdna~vl~~l 283 (331)
++ .++.+.+..+|+|++.+. |......+..
T Consensus 1645 ik-~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1645 IK-HGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred Hc-cCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 99 999999999999999986 4444444433
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0011 Score=65.68 Aligned_cols=91 Identities=20% Similarity=0.095 Sum_probs=78.4
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
....|.++.|++.|..||.++|..+.++..-|.++. ..+....|+.-|..|+.++|+-+.-+-.-+.+... +|++++|
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~l-kl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rl-lg~~e~a 201 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFL-KLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERL-LGNWEEA 201 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceee-eccCCchhhhhhhhhhccCcccccccchhhHHHHH-hhchHHH
Confidence 345578899999999999999999999999998854 57899999999999999999987766666666666 8999999
Q ss_pred HHHHHHHHHhCCC
Q 020109 263 ESYFDQAVKSAPD 275 (331)
Q Consensus 263 ieyferALeldPd 275 (331)
..+|..|.+++-+
T Consensus 202 a~dl~~a~kld~d 214 (377)
T KOG1308|consen 202 AHDLALACKLDYD 214 (377)
T ss_pred HHHHHHHHhcccc
Confidence 9999999999863
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.019 Score=60.42 Aligned_cols=112 Identities=12% Similarity=-0.029 Sum_probs=83.2
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAE 263 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAi 263 (331)
.+.++|++|.....+.|...|+++.++..--.++ .....|++|.++.++-....-.+... +..|.+.++ .+..++|+
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvVal-Iq~~ky~~ALk~ikk~~~~~~~~~~~-fEKAYc~Yr-lnk~Deal 99 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDEDAIRCKVVAL-IQLDKYEDALKLIKKNGALLVINSFF-FEKAYCEYR-LNKLDEAL 99 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhh-hhhhHHHHHHHHHHhcchhhhcchhh-HHHHHHHHH-cccHHHHH
Confidence 3457899999999999999999888765432222 24578888885444433322223222 577888999 99999999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.++ -+++.+..++.-.|.+++++++|+++-.+++
T Consensus 100 k~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~ 134 (652)
T KOG2376|consen 100 KTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQ 134 (652)
T ss_pred HHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 9988 5666677788888999999999999998776
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.036 Score=54.11 Aligned_cols=114 Identities=18% Similarity=0.150 Sum_probs=80.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHHcCCH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA--DLIWQAHKDA 259 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA--~ll~~~~Gd~ 259 (331)
-+...+++..|...|..++..+|++.++...||.++. ..|+.+.|...+...=....++.... .-+ .++.+ ....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l-~~g~~e~A~~iL~~lP~~~~~~~~~~-l~a~i~ll~q-aa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLL-AAGDVEAAQAILAALPLQAQDKAAHG-LQAQIELLEQ-AAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHH-HcCChHHHHHHHHhCcccchhhHHHH-HHHHHHHHHH-HhcC
Confidence 4556788999999999999999999999999998864 67888888887776433333333222 222 22222 2222
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
.+ ..-+++.+..+|+|....+.+|..|...|+.++|..-
T Consensus 220 ~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~ 258 (304)
T COG3118 220 PE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEH 258 (304)
T ss_pred CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 22 2346777888899999999999999999998888743
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0064 Score=38.90 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
.+++.+|.++. ..|++++|.++|+++++++|+
T Consensus 2 ~~~~~lg~~y~-~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 2 EAYYNLGKIYE-QLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHH-HTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC
Confidence 45666676643 567777777777777777774
|
... |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.052 Score=57.89 Aligned_cols=124 Identities=21% Similarity=0.190 Sum_probs=105.7
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--------- 241 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d--------- 241 (331)
+.--||++|...++.+.|...|++|.+.+=.. +.+|..+|..- ....+++.|.++.++|... |.+
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE-lrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~ 466 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME-LRHENFEAALKLMRRATHV-PTNPELEYYDNS 466 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH-HhhhhHHHHHHHHHhhhcC-CCchhhhhhcCC
Confidence 34568999999999999999999999986543 56778888763 3568899999999999753 333
Q ss_pred ----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 ----------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 ----------~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+|..|+++... .|=++.....|++.+.+.--.+.+..+||.+|.....++++.+.+|
T Consensus 467 ~pvQ~rlhrSlkiWs~y~DleEs-~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YE 535 (835)
T KOG2047|consen 467 EPVQARLHRSLKIWSMYADLEES-LGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYE 535 (835)
T ss_pred CcHHHHHHHhHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4568888998887 9999999999999999999999999999999999999999999887
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.013 Score=59.02 Aligned_cols=123 Identities=17% Similarity=0.027 Sum_probs=96.2
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----------
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPS---------- 240 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~---------- 240 (331)
..+++...-.+.++++.++|++|+++..++.+ ++..++.++. ..+|+++|..+..+|..+-.+
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~-~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFA-QLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHH-HHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 34677777788999999999999998554322 4567787765 579999999999999876543
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSA------PDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeld------Pdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
...+++.+|..+.. +|+.-.|.++.+.|.++. |-.+..+..+|++|...|+.+.|...+|
T Consensus 205 r~~~lyhmaValR~-~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 205 RAMSLYHMAVALRL-LGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHHHH-hcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 23456778888888 999999999999998874 2344567788999999999888776555
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.098 Score=51.01 Aligned_cols=112 Identities=18% Similarity=0.204 Sum_probs=91.6
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA--HKDASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~--~Gd~deAieyf 266 (331)
.+.-+.+|++||+.||++...+..|-.+.. ..-+-++..+-+++++..+|+++..+..|-...... .-.+......|
T Consensus 47 ~E~klsilerAL~~np~~~~L~l~~l~~~~-~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSERLLLGYLEEGE-KVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 478899999999999999999998888754 456888889999999999999999999887765441 34677888888
Q ss_pred HHHHHhCC------------------CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 267 DQAVKSAP------------------DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 267 erALeldP------------------dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++++.-. .-.++...++.++++.|..+.|...++
T Consensus 126 ~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Q 178 (321)
T PF08424_consen 126 EKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQ 178 (321)
T ss_pred HHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHH
Confidence 88887632 112567788999999999999998776
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.08 Score=49.68 Aligned_cols=114 Identities=17% Similarity=0.102 Sum_probs=86.2
Q ss_pred CCCcccccHHHHHHh----CCCcHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHh
Q 020109 171 GGSGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGN-ALLLGNYARFLKEVRG--------DFAKAEELCGRAILA 237 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~----~gd~ekA~e~yekALeldP~n-peal~~yA~lLy~~~G--------dyeeAee~~erAL~l 237 (331)
|+.....+||..|.. ..++.+|..+|++|.+..-.. ......++.++. .+ +..+|..+|.+|-..
T Consensus 107 g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~--~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 107 GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYL--SGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHH--cChhhhcccHHHHhHHHHHHHHHHh
Confidence 345556778888777 458899999999999885544 334566666643 23 344899999999887
Q ss_pred CCCCHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 238 NPSDGNILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 238 dP~d~~vL~~lA~ll~~~---~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
. ++.+...++.++..- ..++.+|..+|.+|.+... ...++.++ +++..|
T Consensus 185 ~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 185 G--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred c--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 6 888888899887652 2589999999999999987 77888888 666666
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.08 Score=51.63 Aligned_cols=96 Identities=16% Similarity=0.159 Sum_probs=81.7
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 193 DAYYEKMIEANPGNALLLGNYARFLKEVRG-----------DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 193 ~e~yekALeldP~npeal~~yA~lLy~~~G-----------dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
..-|++.++.+|.|...|..|+.+.-.... -.+..+.+|++||+.+|++...+..|-.+..+ .-+-++
T Consensus 5 ~~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~-~~~~~~ 83 (321)
T PF08424_consen 5 TAELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEK-VWDSEK 83 (321)
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHH
Confidence 346789999999999999999877432211 13567889999999999999999999998888 889999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~k 289 (331)
..+-+++++..+|++..+|..|-.+...
T Consensus 84 l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 84 LAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 9999999999999999999998887776
|
|
| >KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0031 Score=64.58 Aligned_cols=81 Identities=17% Similarity=0.040 Sum_probs=76.7
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
..++++.|...|-+||.++|+++.++..-|.++++ .+++-.|+.=+.+|++++|.....|+..|.+.+..+++-+|..+
T Consensus 16 ~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK-~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~ 94 (476)
T KOG0376|consen 16 KDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLK-VESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLD 94 (476)
T ss_pred ccchHHHHHHHHHHHHhcCCcceeeechhhhhhee-echhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHH
Confidence 46899999999999999999999999999999999 99999999999999999999999999999999999999999877
Q ss_pred hh
Q 020109 300 NE 301 (331)
Q Consensus 300 ~e 301 (331)
++
T Consensus 95 l~ 96 (476)
T KOG0376|consen 95 LE 96 (476)
T ss_pred HH
Confidence 76
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.0076 Score=59.46 Aligned_cols=92 Identities=7% Similarity=0.137 Sum_probs=78.2
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHHcCCHHHHHHHHHHHHH
Q 020109 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY-ADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 193 ~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l-A~ll~~~~Gd~deAieyferALe 271 (331)
.-.|.++-...|+|+.+|..|+... ...+-|.+-...|.++++..|.|.+.|... +.-++. .++++.+...|.++++
T Consensus 93 ~f~~~R~tnkff~D~k~w~~y~~Y~-~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~-~ani~s~Ra~f~~glR 170 (435)
T COG5191 93 IFELYRSTNKFFNDPKIWSQYAAYV-IKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFE-IANIESSRAMFLKGLR 170 (435)
T ss_pred eEeeehhhhcCCCCcHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhh-hccHHHHHHHHHhhhc
Confidence 3445677778999999999999775 467899999999999999999999999874 444555 8999999999999999
Q ss_pred hCCCCHHHHHHHHHH
Q 020109 272 SAPDDCYVLASYAKF 286 (331)
Q Consensus 272 ldPdna~vl~~lA~~ 286 (331)
.+|+++.+|+.+-++
T Consensus 171 ~N~~~p~iw~eyfr~ 185 (435)
T COG5191 171 MNSRSPRIWIEYFRM 185 (435)
T ss_pred cCCCCchHHHHHHHH
Confidence 999999998877543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.032 Score=54.23 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=80.7
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEA----NPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALel----dP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~ 247 (331)
.+..-+++.-.+-|+.+.|..||++.-+. +.. +-.+.-+.|.+ +...+++..|...|.+.+..||.++.+...
T Consensus 213 ~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i-~lg~nn~a~a~r~~~~i~~~D~~~~~a~Nn 291 (366)
T KOG2796|consen 213 QLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFL-HLGQNNFAEAHRFFTEILRMDPRNAVANNN 291 (366)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhh-eecccchHHHHHHHhhccccCCCchhhhch
Confidence 34455667777889999999999955443 332 22233344444 456789999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 248 YADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
.|.++.- .|+...|++.++++++..|...
T Consensus 292 KALcllY-lg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 292 KALCLLY-LGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHhccCCccc
Confidence 9999998 9999999999999999999543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.034 Score=55.56 Aligned_cols=117 Identities=19% Similarity=0.091 Sum_probs=91.1
Q ss_pred HHHhCCCcHHHHHHHHHHHHh-CCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 182 YSNNNHGSSSTDAYYEKMIEA-NPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALel-dP~npeal---~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
.++-+|+.+.-+..++|.|-. ||+-|.+- ..||-.+ +-.|-|++|++..++|+++||.|..+.-..|.++.. .+
T Consensus 146 a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL-~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem-~~ 223 (491)
T KOG2610|consen 146 AHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGL-EECGIYDDAEKQADRALQINRFDCWASHAKAHVLEM-NG 223 (491)
T ss_pred HHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhH-HHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHh-cc
Confidence 455567778888899999988 88875543 4566555 357999999999999999999999999999999998 99
Q ss_pred CHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPDDC-----YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPdna-----~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.++.++..+--..-- .. -.|-..|.|+..-++++.|.+++.
T Consensus 224 r~Keg~eFM~~ted~Wr-~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 224 RHKEGKEFMYKTEDDWR-QSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhhhHHHHHHhcccchh-hhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999998776443322 22 234466888888899998886554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.061 Score=51.46 Aligned_cols=82 Identities=15% Similarity=0.043 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC---YVL 280 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL~~lA~ll~~~~Gd~deAieyferALeldPdna---~vl 280 (331)
+..|++-|.... ..|+|++|..+|+++....|..++ ++..++.++++ .+++++|+.++++-+++.|.++ +++
T Consensus 34 ~~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk-~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 34 ASELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYK-NGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 445555565543 679999999999999999998765 67788999999 9999999999999999998444 566
Q ss_pred HHHHHHHHHc
Q 020109 281 ASYAKFLWDA 290 (331)
Q Consensus 281 ~~lA~~L~kl 290 (331)
+-.|.++...
T Consensus 112 YlkgLs~~~~ 121 (254)
T COG4105 112 YLKGLSYFFQ 121 (254)
T ss_pred HHHHHHHhcc
Confidence 6777775544
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.04 Score=46.52 Aligned_cols=93 Identities=13% Similarity=0.041 Sum_probs=63.1
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcC----------CHHHHHHHHHHHHHhCCCCHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRG----------DFAKAEELCGRAILANPSDGNIL 245 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lLy~~~G----------dyeeAee~~erAL~ldP~d~~vL 245 (331)
.|.-++.+|++-+|.+..+.++..++++. .++..-|.+++.+.. -.--|.++|.+++.+.|+.+..+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L 81 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL 81 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence 46678899999999999999999999876 344445555443221 11236777777777777776666
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALel 272 (331)
+.+|.-+-- ...|+++...-+|+|.+
T Consensus 82 ~~la~~l~s-~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 82 FELASQLGS-VKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHhhh-HHHHHHHHHHHHHHhcc
Confidence 666665544 55566666666666654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.0076 Score=61.40 Aligned_cols=119 Identities=13% Similarity=0.016 Sum_probs=73.2
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHH--H
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAILA----NPSDGN--I 244 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~------npeal~~yA~lLy~~~GdyeeAee~~erAL~l----dP~d~~--v 244 (331)
+|+++.|.-.|+|+.|+.+-+.-|++... .-.++.++|.++- ..|+++.|.++|++++.+ ...-.+ .
T Consensus 199 GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hi-flg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 199 GNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHI-FLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred cccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhh-hhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 35556666667777777777666665332 1335566666643 467788888887776533 222222 2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHH
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldP------dna~vl~~lA~~L~klG~~eEa~ 297 (331)
-+.+|..|.- ..++++||+|+.+-+++.- ....++..+|..+-.+|+.+.|-
T Consensus 278 cYSLgNtytl-l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl 335 (639)
T KOG1130|consen 278 CYSLGNTYTL-LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKAL 335 (639)
T ss_pred HHHhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHH
Confidence 3456677776 7778888888777666532 33455666777777777766665
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.056 Score=54.37 Aligned_cols=125 Identities=16% Similarity=0.059 Sum_probs=90.0
Q ss_pred ccccHHHHHHh---CCCcHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCCCCH
Q 020109 175 FSGSNNNYSNN---NHGSSSTDAYYEKMIE-ANPGNALLLGNYARFLKEVR--------GDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 175 ~~~N~A~~y~~---~gd~ekA~e~yekALe-ldP~npeal~~yA~lLy~~~--------GdyeeAee~~erAL~ldP~d~ 242 (331)
....||-.+.. .|+.++|+..+..++. ..+.+++.+..+|.++.... ...++|+..|.++..++| +.
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~ 259 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DY 259 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cc
Confidence 45567888888 7899999999999554 56678999999998854221 246889999999999995 55
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------Hh----CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAV--------KS----APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferAL--------el----dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.-.++|.++.. .|+..+....+.+.. +. .-.+.+.+..++.+..-.++++++..-.+
T Consensus 260 Y~GIN~AtLL~~-~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 260 YSGINAATLLML-AGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred cchHHHHHHHHH-cCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 555677777776 555333332222211 11 22677888899999999999999987666
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.082 Score=50.84 Aligned_cols=117 Identities=13% Similarity=0.078 Sum_probs=82.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCCH-HHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLL------GNYARFLKEVRGDFAKAEELCGRAILAN-----PSDG-NILS 246 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal------~~yA~lLy~~~GdyeeAee~~erAL~ld-----P~d~-~vL~ 246 (331)
-+..|...+++++|+.++++|++...+|...+ -..|.++ +....+.++..+|++|..+- |+-+ .++-
T Consensus 37 AAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLa-ke~~klsEvvdl~eKAs~lY~E~GspdtAAmale 115 (308)
T KOG1585|consen 37 AAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLA-KELSKLSEVVDLYEKASELYVECGSPDTAAMALE 115 (308)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHH
Confidence 45677888999999999999997655553322 2223333 45678999999999998653 2222 2333
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHh
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna------~vl~~lA~~L~klG~~eEa~~ 298 (331)
..|.+ .. .-+.++|+.+|+|++.+--.+. ..+...+++|.+..+++||..
T Consensus 116 KAak~-le-nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~ 171 (308)
T KOG1585|consen 116 KAAKA-LE-NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAAT 171 (308)
T ss_pred HHHHH-hh-cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHH
Confidence 34443 45 6999999999999999855332 345677888999999888873
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.012 Score=36.98 Aligned_cols=31 Identities=29% Similarity=0.400 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPd 275 (331)
++..+|.++.+ .|++++|+.+|+++++..|+
T Consensus 2 a~~~~a~~~~~-~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYYK-LGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHH-HCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHH-ccCHHHHHHHHHHHHHHCcC
Confidence 45556666666 66666666666666666664
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.084 Score=53.14 Aligned_cols=125 Identities=17% Similarity=0.122 Sum_probs=96.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHH-HHHhCCCCHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA----NPGNALLLGNYARFLKE--VRGDFAKAEELCGR-AILANPSDGNILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel----dP~npeal~~yA~lLy~--~~GdyeeAee~~er-AL~ldP~d~~vL~~l 248 (331)
.-|+=..|....+|+.-+...+.+-.+ -++.+.+.+.||.++.+ ..|+.++|.+.+.. .....+.+++.+..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 346666788889999999998876666 45677788889988753 16899999999999 567777899999999
Q ss_pred HHHH---HHH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLI---WQA-----HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll---~~~-----~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.++ |.. ....++|+.+|.++.+++| +.+.-.+++.++...|...+...+.+
T Consensus 224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~-~~Y~GIN~AtLL~~~g~~~~~~~el~ 283 (374)
T PF13281_consen 224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP-DYYSGINAATLLMLAGHDFETSEELR 283 (374)
T ss_pred HHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc-cccchHHHHHHHHHcCCcccchHHHH
Confidence 9877 221 2357899999999999996 66777788888888887655554444
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.14 Score=51.59 Aligned_cols=129 Identities=13% Similarity=0.061 Sum_probs=98.3
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH---H---------------------------HHHHHHHHHc
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL---G---------------------------NYARFLKEVR 221 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal---~---------------------------~yA~lLy~~~ 221 (331)
++.+.-|+|-+++=.|.|.+|+....+| |++|.-. + .+|.+.| +.
T Consensus 90 ~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhY-mR 164 (557)
T KOG3785|consen 90 PAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHY-MR 164 (557)
T ss_pred CcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHH-HH
Confidence 3346679999999999999998876653 4443321 1 2333444 34
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 222 GDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 222 GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
-.|++|+..|.+.+.-+|+.......+|.++++ ..-++-+.+.++-.++..|+.+.+..-.+..++++=+-.-|+.+.+
T Consensus 165 ~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyK-lDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDNPEYIALNVYMALCYYK-LDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHh-cchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 578999999999999999999999999999999 9999999999999999999999988888888777744333444444
Q ss_pred hcccc
Q 020109 302 EGQHQ 306 (331)
Q Consensus 302 ~~~~~ 306 (331)
+++.+
T Consensus 244 ~ladN 248 (557)
T KOG3785|consen 244 ELADN 248 (557)
T ss_pred HHHhc
Confidence 44433
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.06 Score=43.37 Aligned_cols=47 Identities=21% Similarity=0.142 Sum_probs=24.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 193 ~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
+..++++++.+|+|..+.+.+|..+. ..|++++|.+.+-.+++.+++
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~-~~g~~e~Al~~Ll~~v~~dr~ 54 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALL-AAGDYEEALDQLLELVRRDRD 54 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHH-HTT-HHHHHHHHHHHHCC-TT
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCcc
Confidence 34455555555555555555555543 455555555555555555544
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.048 Score=46.01 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
..++..++..+. ..|++++|..++++++.++|.|-.++..+-.++.. .|+..+|+.+|+++.+.
T Consensus 62 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~-~g~~~~A~~~Y~~~~~~ 125 (146)
T PF03704_consen 62 LDALERLAEALL-EAGDYEEALRLLQRALALDPYDEEAYRLLMRALAA-QGRRAEALRVYERYRRR 125 (146)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-CcCHHHHHHHHHHHHHH
Confidence 445566666654 68999999999999999999999999999999999 99999999999988765
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.17 Score=49.01 Aligned_cols=112 Identities=18% Similarity=0.133 Sum_probs=96.0
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH-HHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS-RAE 263 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~d-eAi 263 (331)
+...-.+|...-+.+|.+||.|.-+|.---.++..+..+..+-.+++.+.++.+|.|..++-.--.+.-. .++.. +-+
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~-l~d~s~rEL 133 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVEL-LGDPSFREL 133 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHH-hcCcccchH
Confidence 3345578888888888889988877765556666667789999999999999999999999988888877 88988 889
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++.+.++..+..+.-+|...-.++..-+.++.+-
T Consensus 134 ef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL 167 (318)
T KOG0530|consen 134 EFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDEL 167 (318)
T ss_pred HHHHHHHhccccchhhhHHHHHHHHHHhhHHHHH
Confidence 9999999999999999999999999998887765
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.085 Score=50.42 Aligned_cols=129 Identities=14% Similarity=0.014 Sum_probs=88.9
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCC----C-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH------
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANP----G-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS------ 246 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP----~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~------ 246 (331)
--|+.|.-.+++..|-..|.+|-...- . +....+.-|.-.| ...+.++|..++++||++-.+-..+..
T Consensus 39 ~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cy-kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~ 117 (288)
T KOG1586|consen 39 RAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCY-KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHI 117 (288)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHh-hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhh
Confidence 345566666777778777777765422 1 1222222222224 467999999999999999887655544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHhhhhhccccc
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGEDEEEEQDNEEGQHQT 307 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna------~vl~~lA~~L~klG~~eEa~~~~e~~~~~~ 307 (331)
.+|.+|..-..++++|+.+|++|-+-....- ..+...+..-..+++|.+|+.+.++..+..
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7788887634899999999999988755222 235566777788899999999988665543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.11 Score=57.03 Aligned_cols=113 Identities=16% Similarity=0.053 Sum_probs=87.9
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
|..+.+.|..++|..+++..-...++|...+.-+-.+ |+..+++++|..+|++|++.+|+ -+.+..+-.++.+ .+.|
T Consensus 50 aLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~-y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR-~~~y 126 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNV-YRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVR-EKSY 126 (932)
T ss_pred HHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHH-HHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHH-HHHH
Confidence 4566788999999988877666777777777666666 56789999999999999999999 8888888888888 8999
Q ss_pred HHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHcCCchH
Q 020109 260 SRAESYFDQAVKSAPDDCYV-LASYAKFLWDAGEDEE 295 (331)
Q Consensus 260 deAieyferALeldPdna~v-l~~lA~~L~klG~~eE 295 (331)
.+-.+.--+..+..|.+++. |.....++...-.+++
T Consensus 127 k~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~~~~~ 163 (932)
T KOG2053|consen 127 KKQQKAALQLYKNFPKRAYYFWSVISLILQSIFSENE 163 (932)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHhccCCcc
Confidence 98888888888899977754 4444444444433433
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.056 Score=59.09 Aligned_cols=95 Identities=19% Similarity=0.258 Sum_probs=75.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHH----------HHhCCC----------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKM----------IEANPG----------NALLLGNYARFLKEVRGDFAKAEELCGRAI 235 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekA----------LeldP~----------npeal~~yA~lLy~~~GdyeeAee~~erAL 235 (331)
.+|||.++..+++.+.|++||+|+ |..+|. ++..|.-+|+++ +..|+.+.|+.+|..|-
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYl-ES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYL-ESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHH-hcccchHHHHHHHHHhh
Confidence 689999999999999999999873 555654 345566677776 57899888888887653
Q ss_pred ---------------------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 236 ---------------------LANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 236 ---------------------~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
.....|..+-+.+|.-|.. .|++.+|+.+|.||...
T Consensus 940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn-~g~v~~Av~FfTrAqaf 996 (1416)
T KOG3617|consen 940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYEN-DGDVVKAVKFFTRAQAF 996 (1416)
T ss_pred hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHH
Confidence 4445677788889998888 99999999999987654
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.07 Score=54.63 Aligned_cols=120 Identities=7% Similarity=0.002 Sum_probs=89.3
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHh----CCCCHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEA----NPGNAL--LLGNYARFLKEVRGDFAKAEELCGRAILANPS------D 241 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALel----dP~npe--al~~yA~lLy~~~GdyeeAee~~erAL~ldP~------d 241 (331)
....|+|+++.-.++++.|+++|.+++.+ -....+ -.+.+|..++ ..+++++|+.|+.+-|++... .
T Consensus 236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtyt-ll~e~~kAI~Yh~rHLaIAqeL~DriGe 314 (639)
T KOG1130|consen 236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYT-LLKEVQKAITYHQRHLAIAQELEDRIGE 314 (639)
T ss_pred HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34789999999999999999999987664 333333 3466777766 578999999999997765442 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHcCCchH
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP--D----DCYVLASYAKFLWDAGEDEE 295 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldP--d----na~vl~~lA~~L~klG~~eE 295 (331)
..+...+|..+-. .|..++|+.+.++.+++.- . ..-+..++....+.+|..+-
T Consensus 315 ~RacwSLgna~~a-lg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds 373 (639)
T KOG1130|consen 315 LRACWSLGNAFNA-LGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDS 373 (639)
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcc
Confidence 4456677887777 9999999999999888732 1 23356677777777776543
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.017 Score=33.74 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
++..+|.+++. .+++++|+.+|+++++++|
T Consensus 3 ~~~~~a~~~~~-~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLK-LGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHH-HhhHHHHHHHHHHHHccCC
Confidence 34455555555 5555555555555555555
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.18 Score=52.40 Aligned_cols=80 Identities=16% Similarity=0.172 Sum_probs=70.4
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
..+-.+|..|..+.+.+.+-...|.++|..+|++|..|..-|.-.++..-+.+.|..+|.++|..+|+.+..+..|-.+-
T Consensus 105 ~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~eyfrmE 184 (568)
T KOG2396|consen 105 VKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWKEYFRME 184 (568)
T ss_pred HHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHHHHHHHH
Confidence 45677899999999999999999999999999999999988877777666799999999999999999999988775443
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.057 Score=39.65 Aligned_cols=38 Identities=24% Similarity=0.246 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 210 l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
++.+|..++ ..|+|.+|.++++++|+.+|+|..+....
T Consensus 4 lY~lAig~y-kl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 4 LYYLAIGHY-KLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHH-HTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred HHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 334444433 34555555555555555555555554433
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.004 Score=61.75 Aligned_cols=81 Identities=25% Similarity=0.167 Sum_probs=75.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
..|++++|++.|-+||+++|..+..+...+.++++ .++...|+.-+..|++++|+.+.-|-..+....-+|++++|..+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lk-l~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLK-LKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeee-ccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 47899999999999999999999999999999999 99999999999999999999998888888888888999999876
Q ss_pred hh
Q 020109 300 NE 301 (331)
Q Consensus 300 ~e 301 (331)
++
T Consensus 205 l~ 206 (377)
T KOG1308|consen 205 LA 206 (377)
T ss_pred HH
Confidence 65
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.025 Score=37.48 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferAL 270 (331)
+..+|.++.+ .|++++|+++|++++
T Consensus 2 l~~Lg~~~~~-~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQ-QGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHH-CT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHH
Confidence 4556666666 666666666666644
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.061 Score=39.51 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
+.++.+|..+++ .|+|++|..+.+++|+++|+|..+..-...+
T Consensus 2 d~lY~lAig~yk-l~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i 44 (53)
T PF14853_consen 2 DCLYYLAIGHYK-LGEYEKARRYCDALLEIEPDNRQAQSLKELI 44 (53)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHTTS-HHHHHHHHHH
T ss_pred hhHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCcHHHHHHHHHH
Confidence 456778888888 8888888888888888888888766544433
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.2 Score=44.90 Aligned_cols=114 Identities=18% Similarity=0.098 Sum_probs=85.4
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
...-...++.+.+...+..+-.+.|+.+++-..-|.++ ...|+|.+|+.+++.+....|..+.+..++|++++. .+|.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~-i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~-~~D~ 94 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLH-IVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA-LGDP 94 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHH-HHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH-cCCh
Confidence 34455667889999999998889999999988888775 478999999999999999999999999999999988 7774
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
. =..|-+++++..+ ++.+. .+...+....+...|..
T Consensus 95 ~-Wr~~A~evle~~~-d~~a~-~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 95 S-WRRYADEVLESGA-DPDAR-ALVRALLARADLEPAHE 130 (160)
T ss_pred H-HHHHHHHHHhcCC-ChHHH-HHHHHHHHhccccchhh
Confidence 3 3444556666665 44443 34444455545544443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.2 Score=52.14 Aligned_cols=104 Identities=15% Similarity=0.031 Sum_probs=79.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILA-NPSDGNILSLYADL 251 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~l-dP~d~~vL~~lA~l 251 (331)
....+|.++.+.|+.++|++.|+.+++.+|. +-.+..++...+. ..+.|.++...+.+--.+ -|+.+...+..|.+
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LL-elq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALL-ELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHH-hcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 4567999999999999999999999999886 4556777877764 579999999998885332 25567777777776
Q ss_pred HHHHcCCH---------------HHHHHHHHHHHHhCCCCHHH
Q 020109 252 IWQAHKDA---------------SRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 252 l~~~~Gd~---------------deAieyferALeldPdna~v 279 (331)
.+++.+|- ..|.+.+.||++.+|..+..
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y 382 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY 382 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence 66544441 34678999999999977754
|
The molecular function of this protein is uncertain. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=95.49 E-value=1.2 Score=40.03 Aligned_cols=73 Identities=22% Similarity=0.120 Sum_probs=69.1
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
..++.++++.+++..-.+.|+.+.+...-|++++. .|++.+|+.+|+.+.+..|..+++-.-++.||..+++.
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~-r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIV-RGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP 94 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-hCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh
Confidence 46799999999999999999999999999999999 99999999999999999999999999999999999884
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.097 Score=50.34 Aligned_cols=68 Identities=15% Similarity=-0.015 Sum_probs=60.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 218 KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 218 y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
+...+++++|..+.++++.++|++++-+...|.++.+ .+.+..|..-++..|+.-|+++.+..-...+
T Consensus 191 ~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~q-L~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql 258 (269)
T PRK10941 191 LMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQ-LDCEHVALSDLSYFVEQCPEDPISEMIRAQI 258 (269)
T ss_pred HHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence 4568999999999999999999999999999999999 9999999999999999999888775544433
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.015 Score=38.58 Aligned_cols=24 Identities=13% Similarity=0.207 Sum_probs=15.8
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMI 200 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekAL 200 (331)
.|+|.+|...|++++|+.+|+++|
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466777777777777777777744
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.029 Score=58.21 Aligned_cols=115 Identities=14% Similarity=0.034 Sum_probs=91.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHH-HHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---------h
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEK-MIEANPG--------NALLLGNYARFLKEVRGDFAKAEELCGRAIL---------A 237 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yek-ALeldP~--------npeal~~yA~lLy~~~GdyeeAee~~erAL~---------l 237 (331)
+..=..+++.+|++.+|.+.+.. -|...|+ ...+|++++.++| ..+.|.-+..+|.+|++ +
T Consensus 243 l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~-~~~~y~~~~~~F~kAL~N~c~qL~~g~ 321 (696)
T KOG2471|consen 243 LLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHY-QLGCYQASSVLFLKALRNSCSQLRNGL 321 (696)
T ss_pred HHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEee-ehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence 33445677888999988887754 3445565 3456788998887 46999999999999996 1
Q ss_pred CC---------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 238 NP---------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 238 dP---------~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
.| ...+++++.|..+.. .|+.-.|.+.|.+|++..-.++.+|..+|.|..-..+
T Consensus 322 ~~~~~~tls~nks~eilYNcG~~~Lh-~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima~~ 384 (696)
T KOG2471|consen 322 KPAKTFTLSQNKSMEILYNCGLLYLH-SGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMALQ 384 (696)
T ss_pred CCCcceehhcccchhhHHhhhHHHHh-cCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh
Confidence 11 356788899999999 9999999999999999999999999999988776543
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.21 Score=48.11 Aligned_cols=71 Identities=7% Similarity=-0.095 Sum_probs=44.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~ 247 (331)
+.|+=..|.+.+++++|..+.+.++..+|+++.-+..-|.+++ ..+.+..|..-++.-|+..|++|.+...
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~-qL~c~~~A~~DL~~fl~~~P~dp~a~~i 254 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYA-QLDCEHVALSDLSYFVEQCPEDPISEMI 254 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHhCCCchhHHHH
Confidence 4555556666666666666666666666666666665565543 4566666666666666666666665443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.14 Score=48.98 Aligned_cols=119 Identities=17% Similarity=0.085 Sum_probs=79.0
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NILSLY 248 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~------~vL~~l 248 (331)
++|.+ .+.++|..|++++|++...-.. ....+|.++-....++++|+.+|++|-..-..+- ..+.-.
T Consensus 82 ~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKv 160 (288)
T KOG1586|consen 82 NCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKV 160 (288)
T ss_pred HHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence 34444 4788899999999988655333 3336677743333789999999999975443221 233444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYV-------LASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~v-------l~~lA~~L~klG~~eEa~~~~e 301 (331)
|.+.-+ .++|.+|+..|++.....-++... ++..+.|++-..+.--+...+|
T Consensus 161 A~yaa~-leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALe 219 (288)
T KOG1586|consen 161 AQYAAQ-LEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALE 219 (288)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHH
Confidence 666666 899999999999999988777644 4455777776555444443343
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.25 Score=50.85 Aligned_cols=113 Identities=13% Similarity=-0.026 Sum_probs=86.0
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH---------H--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLK---------E--VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy---------~--~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+|.+.+...+.++.+ .++--..+..+..+.| . ...+.+.|+++++...+.-|+.+..+...|.++..
T Consensus 202 gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~- 279 (468)
T PF10300_consen 202 GDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERL- 279 (468)
T ss_pred CcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 567899999999877 3332112222221111 1 13467889999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAP----DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldP----dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|+.++|++.|++++.... -....++.++.++.-+.++++|.....
T Consensus 280 ~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~ 329 (468)
T PF10300_consen 280 KGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFL 329 (468)
T ss_pred hcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHH
Confidence 9999999999999986433 233567889999999999999997665
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.15 Score=47.32 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHhCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHH
Q 020109 191 STDAYYEKMIEANPGNALLL---GNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAES 264 (331)
Q Consensus 191 kA~e~yekALeldP~npeal---~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAie 264 (331)
+.+...++.+..++.+..+- ..+|...+ ..+++++|+..++.++..--+. ..+..++|.++++ .+++|+|+.
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~v-e~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q-~~k~D~AL~ 147 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEV-EANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQ-QKKADAALK 147 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHH-hhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHH-hhhHHHHHH
Confidence 66666777777776654432 23455554 3577777777777776432221 1233456777777 777777777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 265 YFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 265 yferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++...... -.+.+....|+++...|+.++|..-++
T Consensus 148 ~L~t~~~~~-w~~~~~elrGDill~kg~k~~Ar~ay~ 183 (207)
T COG2976 148 TLDTIKEES-WAAIVAELRGDILLAKGDKQEARAAYE 183 (207)
T ss_pred HHhcccccc-HHHHHHHHhhhHHHHcCchHHHHHHHH
Confidence 666543321 123344566777777777777776554
|
|
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.19 Score=40.44 Aligned_cols=73 Identities=18% Similarity=0.082 Sum_probs=56.8
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD--DCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 227 Aee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd--na~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
...-+++++..+|+|..+.+.+|..+.. .|++++|++.+-.+++.+++ +..+.-.+-.++.-+|..+.-....
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~-~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~ 81 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLA-AGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEY 81 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHH-TT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHH
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHH
Confidence 3567889999999999999999999999 99999999999999999984 4677777777888888765544443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.068 Score=56.01 Aligned_cols=88 Identities=27% Similarity=0.161 Sum_probs=77.1
Q ss_pred cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 189 SSSTDAYYEKMIEANPGNALLLGNYARFLKEV--RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 189 ~ekA~e~yekALeldP~npeal~~yA~lLy~~--~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
...|+..|.++++.-|....++.++|.++... .++.-.|+.-+..|+.+||....+++.++.++.+ .+++.+|+...
T Consensus 390 ~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~e-l~r~~eal~~~ 468 (758)
T KOG1310|consen 390 VSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNE-LTRYLEALSCH 468 (758)
T ss_pred HHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHH-HhhHHHhhhhH
Confidence 45789999999999999999999998775422 3577789999999999999999999999999999 99999999998
Q ss_pred HHHHHhCCCCH
Q 020109 267 DQAVKSAPDDC 277 (331)
Q Consensus 267 erALeldPdna 277 (331)
..+....|.+.
T Consensus 469 ~alq~~~Ptd~ 479 (758)
T KOG1310|consen 469 WALQMSFPTDV 479 (758)
T ss_pred HHHhhcCchhh
Confidence 88888888544
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.25 Score=52.86 Aligned_cols=123 Identities=21% Similarity=0.253 Sum_probs=92.8
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNILSLYADLIWQA 255 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP--~d~~vL~~lA~ll~~~ 255 (331)
=|+.+.+.-|=++..++.|.+.|.+.=-.|-...|||.+|- -..-+++|.+.|++-|.+.+ +-.+.|..|-..+.+.
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLE-eh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLE-EHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 47778888888999999999999999889999999999974 45667889999999887764 5556666665444331
Q ss_pred --cCCHHHHHHHHHHHHHhCC-CCH-HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 --HKDASRAESYFDQAVKSAP-DDC-YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 --~Gd~deAieyferALeldP-dna-~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
....++|..+|+|||+.-| ..+ .++..||.+--+-|--..|..+++
T Consensus 561 ygg~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiye 610 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYE 610 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4688999999999999877 333 345566777666666666666665
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.15 Score=53.46 Aligned_cols=115 Identities=19% Similarity=0.099 Sum_probs=72.0
Q ss_pred CCCcccccHHHHHHhC-----CCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHH---cC-CHHHHHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNN-----HGSSSTDAYYEKMIE-----ANPGNALLLGNYARFLKEV---RG-DFAKAEELCGRAIL 236 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~-----gd~ekA~e~yekALe-----ldP~npeal~~yA~lLy~~---~G-dyeeAee~~erAL~ 236 (331)
|+......++.+|..- .|.++|+.+|+.|.. ..-.++.+.+.+|.++... .. |+..|..+|.+|-.
T Consensus 242 g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~ 321 (552)
T KOG1550|consen 242 GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAE 321 (552)
T ss_pred cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHh
Confidence 5666666677776654 567888888888876 1122555666777765421 12 66778888887766
Q ss_pred hCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 237 ANPSDGNILSLYADLIWQAH--KDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 237 ldP~d~~vL~~lA~ll~~~~--Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
.. ++.....+|.++..-. .++.+|.+||..|.+.- +..+.+.++.||..
T Consensus 322 ~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la~~y~~ 372 (552)
T KOG1550|consen 322 LG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLALCYEL 372 (552)
T ss_pred cC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHHHHHHh
Confidence 64 5666666777666512 34667777777777653 44455566666554
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.26 Score=45.76 Aligned_cols=101 Identities=19% Similarity=0.150 Sum_probs=69.0
Q ss_pred CCcHHHHHHHHHHHHh----CCCC---HHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCCC------CHHHHH
Q 020109 187 HGSSSTDAYYEKMIEA----NPGN---ALLLGNYARFLKEVRGDF-------AKAEELCGRAILANPS------DGNILS 246 (331)
Q Consensus 187 gd~ekA~e~yekALel----dP~n---peal~~yA~lLy~~~Gdy-------eeAee~~erAL~ldP~------d~~vL~ 246 (331)
..+++|++.|.-||.. .... +..+..+|-+ |+..++. .+|.++|++|++.... ...+++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWl-yR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWL-YRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 4678888888877663 2222 3344556666 3456663 4478888888766543 356778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAPDDC-YVLASYAKFLWD 289 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldPdna-~vl~~lA~~L~k 289 (331)
++|.+.++ .|++++|..+|.+++...-.+. ..+...|+=+|+
T Consensus 170 LigeL~rr-lg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~w~ 212 (214)
T PF09986_consen 170 LIGELNRR-LGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQWQ 212 (214)
T ss_pred HHHHHHHH-hCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHH
Confidence 89999999 9999999999999998855333 455566655554
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.29 Score=51.69 Aligned_cols=107 Identities=17% Similarity=0.078 Sum_probs=87.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH------HHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY------ADLI 252 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l------A~ll 252 (331)
+...+...+....+...+..+|..||.++....+++..+-.......-+....+.|....|+|..++..+ +.++
T Consensus 73 lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 152 (620)
T COG3914 73 LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYL 152 (620)
T ss_pred HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHH
Confidence 3444455567778899999999999999999999998875555556667777778999999999998877 6665
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
-. .++..++..++++++.+.|.++.+...+...
T Consensus 153 ~~-l~~~~~~~~~l~~~~d~~p~~~~~~~~~~~~ 185 (620)
T COG3914 153 KL-LGRTAEAELALERAVDLLPKYPRVLGALMTA 185 (620)
T ss_pred HH-hccHHHHHHHHHHHHHhhhhhhhhHhHHHHH
Confidence 55 8999999999999999999998877666555
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.057 Score=31.42 Aligned_cols=31 Identities=26% Similarity=0.312 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
++..+|.++. ..+++++|..+|+++++++|.
T Consensus 3 ~~~~~a~~~~-~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYL-KLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHH-HHhhHHHHHHHHHHHHccCCC
Confidence 4455565543 356666666666666666654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.27 Score=54.04 Aligned_cols=88 Identities=22% Similarity=0.298 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH----------HHhCC----------CCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRA----------ILANP----------SDGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erA----------L~ldP----------~d~~vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
.+++||..+ +..+|.+.|++||+++ |..+| .|+..|.-.|..+.. .|+.+.|+.+|..
T Consensus 860 Tyy~yA~~L-ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES-~GemdaAl~~Y~~ 937 (1416)
T KOG3617|consen 860 TYYNYAKYL-EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLES-VGEMDAALSFYSS 937 (1416)
T ss_pred hHHHHHHHH-HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhc-ccchHHHHHHHHH
Confidence 467888886 4789999999999975 34444 344445555676666 8999999999986
Q ss_pred HH---------------------HhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 269 AV---------------------KSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 269 AL---------------------eldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
|- .....|-.+-|.+|+.|...|+..+|..
T Consensus 938 A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~ 988 (1416)
T KOG3617|consen 938 AKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVK 988 (1416)
T ss_pred hhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHH
Confidence 53 2234555677788888888888888774
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.85 Score=43.37 Aligned_cols=119 Identities=14% Similarity=0.049 Sum_probs=83.5
Q ss_pred hCCCcHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH------HcC-CHHHHHHHHHHHHHh----CC---C-------CH
Q 020109 185 NNHGSSSTDAYYEKMIEAN-PGNALLLGNYARFLKE------VRG-DFAKAEELCGRAILA----NP---S-------DG 242 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeld-P~npeal~~yA~lLy~------~~G-dyeeAee~~erAL~l----dP---~-------d~ 242 (331)
++|+++.|..+|.|+-... .-+|.....++.++|. ..+ +++.|..++++|+.+ .. . ..
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~ 84 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL 84 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence 5689999999999988766 4455544444444331 357 999999999999877 22 2 12
Q ss_pred HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 243 NILSLYADLIWQAHKD---ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd---~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
.++..++.++.. .+. +++|..+++.+-.-.|+.+.++.-.-.++.+.++.++.+.++..+-
T Consensus 85 ~iL~~La~~~l~-~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 85 SILRLLANAYLE-WDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHHc-CCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 356677777776 544 4567777778877789888888666677777788888887776443
|
It is also involved in sporulation []. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.085 Score=32.99 Aligned_cols=31 Identities=32% Similarity=0.321 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
+++.+|.++. ..|++++|.++|++++...|+
T Consensus 2 a~~~~a~~~~-~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 2 ALYRLARCYY-KLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHH-HccCHHHHHHHHHHHHHHCcC
Confidence 4566666654 457777777777777777665
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.45 E-value=0.13 Score=51.90 Aligned_cols=127 Identities=16% Similarity=-0.010 Sum_probs=95.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NI 244 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~np-----eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~------~v 244 (331)
..|+++-+++--++.+++.|....+.+.-..+ .+...++..+. -.+.++++.++|++|+.+.-++. .+
T Consensus 86 ~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahl-gls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 86 YLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHL-GLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhh-hHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 56888888888889999999888887643333 12233444432 45789999999999987765433 35
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------CCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAP----------DDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldP----------dna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
...++.++-+ .+|+++|.-|..+|.++-- ..+..++.++..|..+|+..+|.+-++|-+
T Consensus 165 cv~Lgslf~~-l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 165 CVSLGSLFAQ-LKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred hhhHHHHHHH-HHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 6788999888 9999999999999998843 123567888999999999988887776543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.31 E-value=0.71 Score=48.45 Aligned_cols=121 Identities=12% Similarity=-0.034 Sum_probs=84.2
Q ss_pred CCCcccccHHHHHHhCC-----CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCCHH
Q 020109 171 GGSGFSGSNNNYSNNNH-----GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~g-----d~ekA~e~yekALeldP~npeal~~yA~lLy~~~--GdyeeAee~~erAL~ldP~d~~ 243 (331)
|.....+.+|++|.+.. +++.|..+|.++-.... +.+.+.+|.++..-. .|+.+|.+||.+|.+.. +..
T Consensus 286 ~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~--~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~ 361 (552)
T KOG1550|consen 286 GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN--PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HIL 361 (552)
T ss_pred cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC--chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChH
Confidence 34556778999999853 67889999998877765 455566666643222 46789999999998875 788
Q ss_pred HHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCchHHH
Q 020109 244 ILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA-GEDEEEE 297 (331)
Q Consensus 244 vL~~lA~ll~~~---~Gd~deAieyferALeldPdna~vl~~lA~~L~kl-G~~eEa~ 297 (331)
+...+|.++..- ..+..+|..+|++|.+..+ +.+.+.++.++.-- +.++.+.
T Consensus 362 A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g~~~~~~~~ 417 (552)
T KOG1550|consen 362 AIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYGVGRYDTAL 417 (552)
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHccccccHHH
Confidence 888889888651 3689999999999999983 33333333333322 5554444
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.78 Score=48.51 Aligned_cols=119 Identities=15% Similarity=0.098 Sum_probs=102.1
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN-PSDGNILSLYADLIWQA 255 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld-P~d~~vL~~lA~ll~~~ 255 (331)
..|..+-.+.|+++...-.|++++.--....++|.+|+..+. ..|+.+-|...+.++.++. |.-+.....+|.+--.
T Consensus 301 ~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~-~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~- 378 (577)
T KOG1258|consen 301 RYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWME-SSGDVSLANNVLARACKIHVKKTPIIHLLEARFEES- 378 (577)
T ss_pred HHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHH-HcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHh-
Confidence 345667778899999999999999999999999999999875 5699999998888887765 4566667777777777
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
.|+++.|...|++..+--|....+-...+....+.|+.+.+.
T Consensus 379 ~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 379 NGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhh
Confidence 899999999999999999999988888899999999887776
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.1 Score=44.72 Aligned_cols=115 Identities=16% Similarity=0.134 Sum_probs=84.7
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHh--------------------------CCCCHH---HHHHHHHHHHHHcCCHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEA--------------------------NPGNAL---LLGNYARFLKEVRGDFAKAE 228 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALel--------------------------dP~npe---al~~yA~lLy~~~GdyeeAe 228 (331)
-++..+..+|+++.|.++.++||-. .+.|.. +++.|...+. .+|-+.-|.
T Consensus 45 qls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~-~RG~~rTAl 123 (360)
T PF04910_consen 45 QLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLG-RRGCWRTAL 123 (360)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHH-hcCcHHHHH
Confidence 3677888899999999998888642 122222 2344555554 579999999
Q ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCc
Q 020109 229 ELCGRAILANPS-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD-----DCYVLASYAKFLWDAGED 293 (331)
Q Consensus 229 e~~erAL~ldP~-d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd-----na~vl~~lA~~L~klG~~ 293 (331)
++++-.+.+||. ||.....+-+.+.-..++++=-+++++........ -+...+.++.+++.+++.
T Consensus 124 E~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~~~l~~~ 194 (360)
T PF04910_consen 124 EWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAYFRLEKE 194 (360)
T ss_pred HHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHHHHhcCc
Confidence 999999999999 99977777766644378888888888876663221 235678888899999888
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.072 Score=50.79 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=55.5
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~ 243 (331)
|++.+.+.++.+.|.+.|.+|+++-|....-|+.++... +..|+.+.|..-|++.++++|.|--
T Consensus 1 ~a~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~-ekag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 1 YAYMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYT-EKAGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred CcchhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhh-hhcccHHHHHHHHHHHHcCCccccc
Confidence 345566778999999999999999999999999999884 5789999999999999999998753
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.94 E-value=0.05 Score=57.55 Aligned_cols=112 Identities=15% Similarity=0.044 Sum_probs=92.2
Q ss_pred HHhCCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 200 IEANPGNALLL-GNYARFLKEVRGDFAKAEELCGRAILANPSDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 200 LeldP~npeal-~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
+-..|.-|..+ .++|.++++..|+-..|..|+.+|+...|..-. .+..+|.++++ -+-...|-.++.|++.+....+
T Consensus 598 ~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~-~~~~~da~~~l~q~l~~~~sep 676 (886)
T KOG4507|consen 598 AINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIH-YGLHLDATKLLLQALAINSSEP 676 (886)
T ss_pred HhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHH-hhhhccHHHHHHHHHhhcccCc
Confidence 33455555433 467888888899999999999999999997655 46789999999 8899999999999999999899
Q ss_pred HHHHHHHHHHHHcCCchHHHhhhhhcccccCCCCC
Q 020109 278 YVLASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHT 312 (331)
Q Consensus 278 ~vl~~lA~~L~klG~~eEa~~~~e~~~~~~~~~~~ 312 (331)
..++.+|.++..+.+.+.|.+-++.-+-++...++
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~ 711 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTTKCPE 711 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChh
Confidence 99999999999999999999877755555444443
|
|
| >KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.29 Score=48.87 Aligned_cols=91 Identities=16% Similarity=0.016 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS----LYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 211 ~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~----~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
-.-|..++ ..++|..|.++|-+.|+..-.|+.+.. +.|-+.+. .|+|-.|+.=..+|++++|.+..+++.=|.|
T Consensus 85 KeeGN~~f-K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~-l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 85 KEEGNEYF-KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLY-LGNYRSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HHHhHHHH-HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 33466655 578999999999999998888776543 44555566 7999999999999999999999999999999
Q ss_pred HHHcCCchHHHhhhhhc
Q 020109 287 LWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 287 L~klG~~eEa~~~~e~~ 303 (331)
++.+.++.+|..-++++
T Consensus 163 ~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 163 LLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 99999977776666544
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.90 E-value=1 Score=47.10 Aligned_cols=128 Identities=13% Similarity=-0.032 Sum_probs=99.4
Q ss_pred cccHHHHHHhCC--CcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------
Q 020109 176 SGSNNNYSNNNH--GSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN------- 243 (331)
Q Consensus 176 ~~N~A~~y~~~g--d~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~------- 243 (331)
+-.+|.++.+.+ +..+++.|.+..+...|.+ +.....+|.+++...++.+.|...+++|..+...-|.
T Consensus 10 LlGlAe~~rt~~PPkIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fydvKf~ 89 (629)
T KOG2300|consen 10 LLGLAEHFRTSGPPKIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFYDVKFQ 89 (629)
T ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHHhhhhH
Confidence 345888999998 8999999999999988874 3344567888888889999999999999866543332
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna----~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+...++.++......+..|...+.+|+++.-..+ ..+++++.++.-..++.-|.+.+.-+
T Consensus 90 a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~idkD~~sA~elLavg 153 (629)
T KOG2300|consen 90 AASLLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAVG 153 (629)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhcc
Confidence 3556788887734488999999999999976554 55677788888888888887766533
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.89 Score=42.58 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=73.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHc-----C
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAH-----K 257 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~---~~GdyeeAee~~erAL~ldP~d-~~vL~~lA~ll~~~~-----G 257 (331)
.+..+|..+|+ ...+.+++.+.++||.++.. +..|+.+|..+|++|....-.. ......++.++.. - -
T Consensus 91 ~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~-g~~~~~~ 167 (292)
T COG0790 91 RDKTKAADWYR--CAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLS-GLQALAV 167 (292)
T ss_pred ccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHc-Chhhhcc
Confidence 45788999998 56677889999999988653 1348999999999999886444 2446777777765 2 1
Q ss_pred --CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 258 --DASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 258 --d~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
+...|+.+|.+|-... +......++.+|..
T Consensus 168 ~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~ 199 (292)
T COG0790 168 AYDDKKALYLYRKAAELG--NPDAQLLLGRMYEK 199 (292)
T ss_pred cHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHc
Confidence 3448999999998887 67777888877755
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.9 Score=40.12 Aligned_cols=75 Identities=19% Similarity=0.156 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHH--cCCHHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 207 ALLLGNYARFLKEV--RGDFAKAEELCGRAIL-ANPS-DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 207 peal~~yA~lLy~~--~GdyeeAee~~erAL~-ldP~-d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
....++||..+-.. ..|..+.+.+++..++ ..|. ..++++++|...++ .++|++|+.|++.+++.+|+|..+..-
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yR-lkeY~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYR-LKEYSKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHH-HhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 44556777665322 3466778999999996 5554 56688889999999 999999999999999999999877543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.6 Score=43.40 Aligned_cols=72 Identities=11% Similarity=-0.004 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHcCCchHH
Q 020109 223 DFAKAEELCGRAIL-ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD----DCYVLASYAKFLWDAGEDEEE 296 (331)
Q Consensus 223 dyeeAee~~erAL~-ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd----na~vl~~lA~~L~klG~~eEa 296 (331)
.-++|.+-|-++-. -.=++++.+..+|.+|. ..|.++|+.+|-+++++... |++++..++.++.+++++++|
T Consensus 121 ~d~~A~~~fL~~E~~~~l~t~elq~aLAtyY~--krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 121 GDQEALRRFLQLEGTPELETAELQYALATYYT--KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CcHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH--ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34455555554432 12257777777777666 47778888888888887542 467778888888888877765
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.89 Score=44.58 Aligned_cols=127 Identities=11% Similarity=-0.015 Sum_probs=88.5
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARF--LKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~l--Ly~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
.|......||.+|...|+.+.|...+...=..... ..+...-+.+ +. ...+..+ ..-+++.+..||+|......+
T Consensus 166 ~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~-~~~~~l~a~i~ll~-qaa~~~~-~~~l~~~~aadPdd~~aa~~l 242 (304)
T COG3118 166 ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQD-KAAHGLQAQIELLE-QAAATPE-IQDLQRRLAADPDDVEAALAL 242 (304)
T ss_pred ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchh-hHHHHHHHHHHHHH-HHhcCCC-HHHHHHHHHhCCCCHHHHHHH
Confidence 55666777999999999999998887653222222 2222222322 11 1111111 245677888999999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldP--dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|..+.. .|+.++|.+.+-..++.+- ++..+.-.+-.++.-.|..+......+
T Consensus 243 A~~~~~-~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 243 ADQLHL-VGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 999999 9999999999999999975 666777778777777776555544443
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.18 Score=32.94 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
.++..+|.++.. .|++++|+.++++++++
T Consensus 3 ~~~~~la~~~~~-~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRA-QGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHH-CT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-hhhcchhhHHHHHHHHH
Confidence 456677777777 78888888877777765
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.095 Score=50.00 Aligned_cols=58 Identities=17% Similarity=0.179 Sum_probs=54.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
..+|.+.|.+.|.+|+.+-|....-|+.++..-.+ .|+++.|...|++.++++|++..
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ek-ag~~daAa~a~~~~L~ldp~D~~ 64 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEK-AGEFDAAAAAYEEVLELDPEDHG 64 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhh-cccHHHHHHHHHHHHcCCccccc
Confidence 46899999999999999999999999999998888 99999999999999999997764
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.2 Score=45.21 Aligned_cols=117 Identities=14% Similarity=0.159 Sum_probs=91.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHhC--CC-CHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE---ELCGRAILAN--PS-DGNILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAe---e~~erAL~ld--P~-d~~vL~~l 248 (331)
..--+|.+...++++..|+..+++..+.-|+..++-...+...+ ..++.+.+. +++...+.-- +. -...+..+
T Consensus 368 i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~-r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~ 446 (577)
T KOG1258|consen 368 IHLLEARFEESNGNFDDAKVILQRIESEYPGLVEVVLRKINWER-RKGNLEDANYKNELYSSIYEGKENNGILEKLYVKF 446 (577)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHH-HhcchhhhhHHHHHHHHhcccccCcchhHHHHHHH
Confidence 45567888889999999999999999999999888888887776 568777777 3333333211 11 12234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
+++.+...++.+.|...+.+|++..|++..++..+.++.....-
T Consensus 447 ~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 447 ARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred HHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 77777768999999999999999999999999999999888873
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.08 E-value=1.4 Score=41.75 Aligned_cols=103 Identities=11% Similarity=-0.013 Sum_probs=73.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHh-CCCC---------------------------------HHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEA-NPGN---------------------------------ALLLGNYARFLK 218 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALel-dP~n---------------------------------peal~~yA~lLy 218 (331)
+....-+|+++-.+|+..+|+..++..+.. ...+ +.++..+|..+.
T Consensus 184 ~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~ 263 (352)
T PF02259_consen 184 PRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLD 263 (352)
T ss_pred cchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHH
Confidence 445566799999999999999999988882 1111 223444454443
Q ss_pred HH-----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------------HHHHHHHHHHHHHhCCC
Q 020109 219 EV-----RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD----------------ASRAESYFDQAVKSAPD 275 (331)
Q Consensus 219 ~~-----~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd----------------~deAieyferALeldPd 275 (331)
.. ..+.+++..+|.+|++.+|+...++..+|.++...... ...|+..|-+|+...+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~ 341 (352)
T PF02259_consen 264 ELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK 341 (352)
T ss_pred hhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence 21 27788899999999999999999999999887652111 13377888888888876
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.38 Score=44.38 Aligned_cols=59 Identities=20% Similarity=0.166 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 192 TDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 192 A~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
|+.||.+|+.+.|++...++.+|.+.. ..++.-.|..+|-|++...--.+.+..++..+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~-~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~l 59 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLAS-YQGDDLDAVYYYIRSLAVRIPFPSARENLQKL 59 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHH-HTT-HHHHHHHHHHHHSSSB--HHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhc-cccchHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 455555555555555555555555532 34555555555555553333334444444443
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.8 Score=42.57 Aligned_cols=81 Identities=21% Similarity=0.194 Sum_probs=65.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----DGNILSLYADLI 252 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP--~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~----d~~vL~~lA~ll 252 (331)
+..|+=.+-+.+.|..-|.+ ++..| ++++..+.+|.++ ...|.++|..++.++|++.+. |++++..+|.++
T Consensus 112 llYy~Wsr~~d~~A~~~fL~-~E~~~~l~t~elq~aLAtyY--~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 112 LLYYHWSRFGDQEALRRFLQ-LEGTPELETAELQYALATYY--TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIY 188 (203)
T ss_pred HHHHHhhccCcHHHHHHHHH-HcCCCCCCCHHHHHHHHHHH--HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 34455566567888888866 44444 4788989999884 479999999999999988765 599999999999
Q ss_pred HHHcCCHHHHH
Q 020109 253 WQAHKDASRAE 263 (331)
Q Consensus 253 ~~~~Gd~deAi 263 (331)
++ .++++.|-
T Consensus 189 ~~-~~~~e~AY 198 (203)
T PF11207_consen 189 QK-LKNYEQAY 198 (203)
T ss_pred HH-hcchhhhh
Confidence 99 99999885
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.25 Score=51.51 Aligned_cols=117 Identities=10% Similarity=0.041 Sum_probs=94.1
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA-ILANPS--------DGNILSLYAD 250 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erA-L~ldP~--------d~~vL~~lA~ 250 (331)
.++|.+..+...++.....+....-+.+.++..-+++.| ..|++.+|.+.+-.. +...|. ...++.++|-
T Consensus 213 Vr~llq~~~Lk~~krevK~vmn~a~~s~~~l~LKsq~eY-~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGc 291 (696)
T KOG2471|consen 213 VRFLLQTRNLKLAKREVKHVMNIAQDSSMALLLKSQLEY-AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGC 291 (696)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCcHHHHHHHHHHH-HhcchHHHHHHHHhcccccccCccccchhhhheeecCcce
Confidence 356677777788888888888888889999999999987 689999999887654 444443 4456678899
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh---------C---------CCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 251 LIWQAHKDASRAESYFDQAVKS---------A---------PDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALel---------d---------Pdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+.++ .+.|+-+..+|.+|++. . .....++|+.|..|.-.|++-+|..
T Consensus 292 Ih~~-~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~Afq 356 (696)
T KOG2471|consen 292 IHYQ-LGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQ 356 (696)
T ss_pred Eeee-hhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHH
Confidence 9999 99999999999999971 1 2456789999999999999988874
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.81 E-value=2.4 Score=44.93 Aligned_cols=126 Identities=12% Similarity=0.102 Sum_probs=92.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
..-+|-++-.+......|...|.+|=+..-.--.++..-|.+-|.-.+|..-|.+.|+--++..++.|.+...|.+++..
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~ 447 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSH 447 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 34455666666677788888887765543332233333343334457899999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHh--CCC-CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKS--APD-DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALel--dPd-na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++-+-|..+|++++.. .|+ ...+|...-.+-...|+..-..+..+
T Consensus 448 -lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lek 496 (656)
T KOG1914|consen 448 -LNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEK 496 (656)
T ss_pred -hCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 99999999999999998 553 33677777777777888766665444
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.79 E-value=2.7 Score=43.11 Aligned_cols=117 Identities=19% Similarity=0.094 Sum_probs=83.9
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHH---HHHHHHHHHHHcC
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN---PSDGNI---LSLYADLIWQAHK 257 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld---P~d~~v---L~~lA~ll~~~~G 257 (331)
+..|+++.|..|-++|.++-|.-+.++...-.-.+ ..||++.|+++.+...+.. ++-.+- ..+-|...-...-
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~-~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARC-AAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHH-hcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 34578899999999999999988887765443333 4689999988888765433 322221 1111222222146
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|...|...-.+++++.|+....-...+..|.+.|+..++-+.+|
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence 77888888899999999999888899999999999988888776
|
|
| >KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.53 E-value=1.2 Score=45.35 Aligned_cols=107 Identities=12% Similarity=0.124 Sum_probs=85.5
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC---H
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD---A 259 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G-dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd---~ 259 (331)
.++.-.+.-+.+.+.+|+.||+...+|.....++...-- ++..-.+++++++++||.|..++..-=++.-++... .
T Consensus 86 ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~~ 165 (421)
T KOG0529|consen 86 EKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNLE 165 (421)
T ss_pred HHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhcccccc
Confidence 344456788899999999999999999999988642222 478999999999999999988877655555443444 6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.+=++|.++++..++.|.-+|-+...++..+
T Consensus 166 ~~El~ftt~~I~~nfSNYsaWhyRs~lL~~l 196 (421)
T KOG0529|consen 166 KEELEFTTKLINDNFSNYSAWHYRSLLLSTL 196 (421)
T ss_pred hhHHHHHHHHHhccchhhhHHHHHHHHHHHh
Confidence 6778999999999999999999998888744
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=92.52 E-value=1.5 Score=45.61 Aligned_cols=51 Identities=14% Similarity=0.102 Sum_probs=46.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|..++. .|+|.++.-|-....+++| ++.++.-+|.|++...+|+||-+-+.
T Consensus 469 AEyLys-qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~ 519 (549)
T PF07079_consen 469 AEYLYS-QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQ 519 (549)
T ss_pred HHHHHh-cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455677 8999999999999999999 99999999999999999999987665
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.79 Score=40.84 Aligned_cols=71 Identities=14% Similarity=0.074 Sum_probs=42.8
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
..+.+.+...+..+=-+-|+.+++-..-+.++ ...|+|.+|..+++......+.-++...++|++++- ++|
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~-i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~a-l~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLL-IARGNYDEAARILRELLSSAGAPPYGKALLALCLNA-KGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHH-HHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHh-cCC
Confidence 45556666666555556666666555445443 345666666666666666666666666666666665 554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=92.37 E-value=1 Score=44.88 Aligned_cols=104 Identities=8% Similarity=0.003 Sum_probs=81.0
Q ss_pred CCCcc---cccHHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CC
Q 020109 171 GGSGF---SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANP-----SD 241 (331)
Q Consensus 171 ~~~~~---~~N~A~~y~~~gd~ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP-----~d 241 (331)
.|+.+ +..+...+.++|-+..|.++.+-.+.+||. ||......-+++....++|+--+++++....... .-
T Consensus 98 eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~l 177 (360)
T PF04910_consen 98 ENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLL 177 (360)
T ss_pred cchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhC
Confidence 46655 456677888999999999999999999999 8887777777766677888877777777655211 13
Q ss_pred HHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHhCCC
Q 020109 242 GNILSLYADLIWQAHKDA---------------SRAESYFDQAVKSAPD 275 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~---------------deAieyferALeldPd 275 (331)
|...+..|.+++. .++. ++|.+++.+|+...|.
T Consensus 178 Pn~a~S~aLA~~~-l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 178 PNFAFSIALAYFR-LEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred ccHHHHHHHHHHH-hcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 4566777888888 7777 8999999999998773
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.35 E-value=1.5 Score=39.44 Aligned_cols=95 Identities=12% Similarity=-0.002 Sum_probs=47.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHH----H
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNIL----S 246 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~ld--P~d~~vL----~ 246 (331)
+..+|.+|.+.|+.+.|.++|.++......... .+.++..+.. ..+|+.....++.+|-..- +.|.... .
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 345666666666666666666665555433221 1222222221 3466666666666664322 2222222 2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALel 272 (331)
.-|..++. .++|.+|...|-.++..
T Consensus 118 ~~gL~~l~-~r~f~~AA~~fl~~~~t 142 (177)
T PF10602_consen 118 YEGLANLA-QRDFKEAAELFLDSLST 142 (177)
T ss_pred HHHHHHHH-hchHHHHHHHHHccCcC
Confidence 22444444 56666666666555433
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.61 Score=41.13 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=56.4
Q ss_pred cccHHHHHHhCCC---cHHHHHHHHHHHH-hCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 176 SGSNNNYSNNNHG---SSSTDAYYEKMIE-ANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd---~ekA~e~yekALe-ldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
..|||-.+....+ ..+.+.+++..++ ..|. .-+.++.+|.-+| ..++|++|.+|++..+..+|+|..++.+-
T Consensus 35 ~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~y-RlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 35 QFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHY-RLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred HHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHH-HHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 3577877777654 4678899999997 6665 4556677777777 57999999999999999999999886543
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.17 Score=33.07 Aligned_cols=27 Identities=11% Similarity=-0.013 Sum_probs=17.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA 202 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel 202 (331)
+.|+|.+|..+|++++|..++++++.+
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 456677777777777777777776664
|
|
| >COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.6 Score=46.34 Aligned_cols=115 Identities=17% Similarity=-0.021 Sum_probs=84.7
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNY--ARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~y--A~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
..+.-.-++..+..-+..+|.++.++..+ ... ....++...|...++.++..||+++.+...++..+.. .+....+
T Consensus 43 ~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~-~~~~~~~ 120 (620)
T COG3914 43 AEGLQALAIYALLLGIAINDVNPELLLAAFLSIL-LAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALEL-DGLQFLA 120 (620)
T ss_pred ccCchhHHHHHHHccCccCCCCHHHHHHHHHHhh-ccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHH-hhhHHHH
Confidence 33333446666667777899999985443 333 3356777889999999999999999999999999987 5555555
Q ss_pred H-HHHHHHHHhCCCCHHHHHHH------HHHHHHcCCchHHHhhhh
Q 020109 263 E-SYFDQAVKSAPDDCYVLASY------AKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 263 i-eyferALeldPdna~vl~~l------A~~L~klG~~eEa~~~~e 301 (331)
. ...+.+.+..|++..+...+ +..+..+++..++...++
T Consensus 121 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~ 166 (620)
T COG3914 121 LADISEIAEWLSPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALE 166 (620)
T ss_pred HHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 4 55555999999999888777 777777777777665443
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=91.80 E-value=0.48 Score=29.04 Aligned_cols=29 Identities=28% Similarity=0.550 Sum_probs=16.1
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~ 286 (331)
+.++|..+|+++++..|.+..+|..++.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 44555555555555555555555555544
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.74 E-value=1.1 Score=43.39 Aligned_cols=67 Identities=18% Similarity=-0.002 Sum_probs=59.5
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 218 KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 218 y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~ 285 (331)
+...++++.|..+.++.+.++|+||+-+.--|.+|.+ .+.+.-|++-++..++.-|+++.+-.....
T Consensus 191 ~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~q-l~c~~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 191 LLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQ-LGCYHVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHh-cCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 3467899999999999999999999999999999999 999999999999999999988876554443
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.41 E-value=1.3 Score=47.64 Aligned_cols=93 Identities=6% Similarity=-0.050 Sum_probs=53.8
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
-|-|.-.+++++|..++..|...+..-|.|-. ...+++.+ |....+.++|.++++.|-+.+|.++......-.
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~C-YL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~ 436 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVC-YLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ 436 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 34555566666676677766666666554322 22233333 344566677777777777777766666655555
Q ss_pred HHHHHcCCHHHHHHHHHHHHH
Q 020109 251 LIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALe 271 (331)
+... .+.-++|+........
T Consensus 437 ~~~~-E~~Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 437 SFLA-EDKSEEALTCLQKIKS 456 (872)
T ss_pred HHHH-hcchHHHHHHHHHHHh
Confidence 5554 5666666665554443
|
|
| >COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.26 Score=48.93 Aligned_cols=79 Identities=10% Similarity=0.063 Sum_probs=67.2
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
..+-.-|+.+-.+.+-|.+....|.+++..+|.|.+.|..-+.+-+...++.+.+...|.++|..||.+|..|..|-.+
T Consensus 107 ~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~ 185 (435)
T COG5191 107 PKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM 185 (435)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence 4455668888888899999999999999999999999876565545567999999999999999999999998876543
|
|
| >smart00386 HAT HAT (Half-A-TPR) repeats | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.55 Score=28.77 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=17.3
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARF 216 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~l 216 (331)
+++.|...|++++...|.++.+|..|+.+
T Consensus 2 ~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 2 DIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred cHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 34556666666666666666666665554
|
Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.86 E-value=3.5 Score=38.42 Aligned_cols=94 Identities=13% Similarity=0.102 Sum_probs=61.6
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+|+.+...+++++|+..++.++..-.+. +.+-.++|.++. .++.+++|...++....-+ =.+.+....|+++..
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill~- 171 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEES-WAAIVAELRGDILLA- 171 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHHH-
Confidence 4566777788888888887777543321 334456777765 4678888877776543211 133344566788777
Q ss_pred cCCHHHHHHHHHHHHHhCCC
Q 020109 256 HKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 256 ~Gd~deAieyferALeldPd 275 (331)
.|+-++|..-|++|++.+++
T Consensus 172 kg~k~~Ar~ay~kAl~~~~s 191 (207)
T COG2976 172 KGDKQEARAAYEKALESDAS 191 (207)
T ss_pred cCchHHHHHHHHHHHHccCC
Confidence 88888888888888888743
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=90.81 E-value=3.1 Score=33.11 Aligned_cols=54 Identities=22% Similarity=0.227 Sum_probs=32.2
Q ss_pred HcCCHHHHHHHHHHHH----HhCCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 220 VRGDFAKAEELCGRAI----LANPSD-----GNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 220 ~~GdyeeAee~~erAL----~ldP~d-----~~vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
..+||..|.+.+.+.+ ..+... ..++..+|.+... .|++++|+..+++||++.-
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~-~G~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRR-FGHYEEALQALEEAIRLAR 72 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH
Confidence 3577777744444433 333222 3455566666666 7777777777777777743
|
|
| >PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ] | Back alignment and domain information |
|---|
Probab=90.68 E-value=1 Score=41.60 Aligned_cols=62 Identities=23% Similarity=0.141 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 227 AEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 227 Aee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
|+.||.+|+.+.|++...+..+|.+... .++.=.|+-+|-|++...-..+.+..++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~-~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASY-QGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHH-TT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcc-ccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7899999999999999999999999999 9999999999999998876678889999999988
|
This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=90.56 E-value=2 Score=39.94 Aligned_cols=79 Identities=16% Similarity=0.164 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHH----hCCC---CHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHhCC------CCHHHHH
Q 020109 222 GDFAKAEELCGRAIL----ANPS---DGNILSLYADLIWQAHKDA-------SRAESYFDQAVKSAP------DDCYVLA 281 (331)
Q Consensus 222 GdyeeAee~~erAL~----ldP~---d~~vL~~lA~ll~~~~Gd~-------deAieyferALeldP------dna~vl~ 281 (331)
..+++|.+.|..|+. .... -+.....+||++.. .++. .+|.++|++|++... +...+++
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~-~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRD-LGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 455666666655542 1212 24566778999988 8884 456666677776653 3357888
Q ss_pred HHHHHHHHcCCchHHHhhhh
Q 020109 282 SYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 282 ~lA~~L~klG~~eEa~~~~e 301 (331)
-+|.+.++.|++++|..-..
T Consensus 170 LigeL~rrlg~~~eA~~~fs 189 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFS 189 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999996543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.30 E-value=4.8 Score=41.38 Aligned_cols=93 Identities=16% Similarity=0.105 Sum_probs=52.0
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKA-EELCGRAILANPSDGNILSLYADLIWQAHKD 258 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeA-ee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd 258 (331)
|+.|++.++..++-..++.+.+.+|. |.++..|-.. ..||-... .+-.++...+.|||.+.....+...+. .|+
T Consensus 270 Aralf~d~~~rKg~~ilE~aWK~ePH-P~ia~lY~~a---r~gdta~dRlkRa~~L~slk~nnaes~~~va~aAld-a~e 344 (531)
T COG3898 270 ARALFRDGNLRKGSKILETAWKAEPH-PDIALLYVRA---RSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALD-AGE 344 (531)
T ss_pred HHHHHhccchhhhhhHHHHHHhcCCC-hHHHHHHHHh---cCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHh-ccc
Confidence 45555666666666666666666663 3333333222 12332221 233344455566666666666777776 777
Q ss_pred HHHHHHHHHHHHHhCCCCH
Q 020109 259 ASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 259 ~deAieyferALeldPdna 277 (331)
+..|..--+.+....|...
T Consensus 345 ~~~ARa~Aeaa~r~~pres 363 (531)
T COG3898 345 FSAARAKAEAAAREAPRES 363 (531)
T ss_pred hHHHHHHHHHHhhhCchhh
Confidence 7777777777777777433
|
|
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=90.30 E-value=0.91 Score=30.68 Aligned_cols=33 Identities=12% Similarity=0.057 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 020109 208 LLLGNYARFLKEVRGDFAKAEEL--CGRAILANPSD 241 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~--~erAL~ldP~d 241 (331)
+.+..+|..++ ..|++++|+.+ |+-+..+++.|
T Consensus 2 e~~y~~a~~~y-~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFY-QKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHH-HTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHhcccC
Confidence 34555565554 45666666666 33565555543
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=90.25 E-value=5.5 Score=37.84 Aligned_cols=98 Identities=8% Similarity=-0.030 Sum_probs=72.8
Q ss_pred ccccHHHHHHhCC-CcHHHHHHHHHHHHh----C---CCCHHH-------HHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNH-GSSSTDAYYEKMIEA----N---PGNALL-------LGNYARFLKEVRG---DFAKAEELCGRAIL 236 (331)
Q Consensus 175 ~~~N~A~~y~~~g-d~ekA~e~yekALel----d---P~npea-------l~~yA~lLy~~~G---dyeeAee~~erAL~ 236 (331)
..+|.|.-+.+++ +++.|...+++|+++ . ...+.+ +..++.++. ..+ .+++|..+.+.+-.
T Consensus 37 ~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l-~~~~~~~~~ka~~~l~~l~~ 115 (278)
T PF08631_consen 37 VCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYL-EWDTYESVEKALNALRLLES 115 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHH
Confidence 4689999999999 999999999999998 2 222222 334454432 223 44567888888888
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 237 ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 237 ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
..|+.+.++...-.++.+ .++.+++.+.+.+++..-+
T Consensus 116 e~~~~~~~~~L~l~il~~-~~~~~~~~~~L~~mi~~~~ 152 (278)
T PF08631_consen 116 EYGNKPEVFLLKLEILLK-SFDEEEYEEILMRMIRSVD 152 (278)
T ss_pred hCCCCcHHHHHHHHHHhc-cCChhHHHHHHHHHHHhcc
Confidence 889888887666666666 7999999999999999865
|
It is also involved in sporulation []. |
| >PLN03138 Protein TOC75; Provisional | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.86 Score=50.05 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=6.7
Q ss_pred HHHHHHHHHHhCCC
Q 020109 227 AEELCGRAILANPS 240 (331)
Q Consensus 227 Aee~~erAL~ldP~ 240 (331)
.++.+.+++.+.|.
T Consensus 166 ~e~~l~~~i~~kpG 179 (796)
T PLN03138 166 TEDSFFEMVTLRPG 179 (796)
T ss_pred hHHHHHHHHhcCCC
Confidence 34444455555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=89.33 E-value=7.1 Score=41.49 Aligned_cols=126 Identities=16% Similarity=0.217 Sum_probs=90.6
Q ss_pred ccccHHHHHHhCCC---cHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHG---SSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 175 ~~~N~A~~y~~~gd---~ekA~e~yekALeldP~np-eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+-.-|+.+-+..-+ +++-..+|++++.+.-.++ .++..|-.+.. ...-...|...|.+|-+.--.--.++...|.
T Consensus 330 Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~ir-R~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~ 408 (656)
T KOG1914|consen 330 LYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIR-RAEGLKAARKIFKKAREDKRTRHHVFVAAAL 408 (656)
T ss_pred HHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHH-HhhhHHHHHHHHHHHhhccCCcchhhHHHHH
Confidence 33344444444444 6777788888888755443 35566666654 3345677888888887644333355555566
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+-+...+|.+-|...|+-.++..++.+..-..+.++|..+++...+....|
T Consensus 409 mEy~cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFE 459 (656)
T KOG1914|consen 409 MEYYCSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFE 459 (656)
T ss_pred HHHHhcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHH
Confidence 555548999999999999999999999999999999999999888876554
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.30 E-value=0.88 Score=48.05 Aligned_cols=80 Identities=18% Similarity=-0.025 Sum_probs=69.5
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 222 GDFAKAEELCGRAILANPSDGNILSLYADLIWQ--AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 222 GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~--~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
.....|+..|.++++..|+..+.+.++|.++.+ +.++.-.|+.-...|++++|-...+|+.+++++..++++.||...
T Consensus 388 ~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~~eal~~ 467 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRYLEALSC 467 (758)
T ss_pred HHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhh
Confidence 456778999999999999999999998887754 247777788888899999999999999999999999999999865
Q ss_pred hh
Q 020109 300 NE 301 (331)
Q Consensus 300 ~e 301 (331)
..
T Consensus 468 ~~ 469 (758)
T KOG1310|consen 468 HW 469 (758)
T ss_pred HH
Confidence 55
|
|
| >KOG2300 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.88 E-value=4.8 Score=42.28 Aligned_cols=122 Identities=17% Similarity=0.187 Sum_probs=87.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCC-CH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG-NA--LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------- 241 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~-np--eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---------- 241 (331)
....+|.+....+.++.|...|..|.++-.. +- ....++|.. |...+ +++.+|+-.-.+.|.|
T Consensus 369 ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~-YL~~~---~~ed~y~~ld~i~p~nt~s~ssq~l~ 444 (629)
T KOG2300|consen 369 IHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS-YLRIG---DAEDLYKALDLIGPLNTNSLSSQRLE 444 (629)
T ss_pred HHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH-HHHhc---cHHHHHHHHHhcCCCCCCcchHHHHH
Confidence 3455666777788999999999999988554 32 333466766 44444 4666777666777764
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH-----HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAP-DDC-----YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldP-dna-----~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+++.+|.+.+. +++++||...+.+.++..- .+- -.+.-++++..-.|+..|+....+
T Consensus 445 a~~~~v~glfaf~-qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvr 509 (629)
T KOG2300|consen 445 ASILYVYGLFAFK-QNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVR 509 (629)
T ss_pred HHHHHHHHHHHHH-hccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccc
Confidence 3467788999999 9999999999999999873 111 123356777788899888886554
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.43 E-value=3 Score=37.25 Aligned_cols=73 Identities=16% Similarity=0.078 Sum_probs=68.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
...+.++++..++..--+-|+.+.+-..-++++.. .|++.+|+.+|....+-.+..++...-++.|+.-+++.
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~-rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~Dp 94 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIA-RGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGDA 94 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHH-cCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCCh
Confidence 36899999999999999999999999999999999 99999999999999999999899989999999998874
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [] | Back alignment and domain information |
|---|
Probab=87.94 E-value=1.7 Score=29.35 Aligned_cols=33 Identities=12% Similarity=0.029 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHHhCCCC
Q 020109 243 NILSLYADLIWQAHKDASRAESY--FDQAVKSAPDD 276 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAiey--ferALeldPdn 276 (331)
+.+..+|..+.. +|++++|+++ |.-+..+++.|
T Consensus 2 e~~y~~a~~~y~-~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 2 EYLYGLAYNFYQ-KGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHTTT-
T ss_pred cHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHhcccC
Confidence 567788999999 9999999999 55888888764
|
; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.84 E-value=6.6 Score=36.42 Aligned_cols=132 Identities=13% Similarity=0.020 Sum_probs=96.6
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-----H
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLL--GNYARFLKEVRGDFAKAEELCGRAILANPSDGN-----I 244 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal--~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-----v 244 (331)
+++.-+.-|.-+-..++.++|...|...-.-.-++...+ ...|.++. ..|+-..|..+|..+-.-.|- |. +
T Consensus 57 ~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a-~kgdta~AV~aFdeia~dt~~-P~~~rd~A 134 (221)
T COG4649 57 KSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLA-QKGDTAAAVAAFDEIAADTSI-PQIGRDLA 134 (221)
T ss_pred cchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHh-hcccHHHHHHHHHHHhccCCC-cchhhHHH
Confidence 444555566667777889999999977655555554444 34456654 679999999999998765442 32 3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccc
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAV-KSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQ 306 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferAL-eldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~ 306 (331)
....|+++.. .|-|+.....++.+- .-+|-...+...++...|+.|++.+|...++++...
T Consensus 135 Rlraa~lLvD-~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVD-NGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhc-cccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 4456788888 999999888777643 345677788889999999999999999888766553
|
|
| >KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.72 E-value=5.6 Score=40.24 Aligned_cols=111 Identities=14% Similarity=-0.046 Sum_probs=72.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----------------
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----------------- 240 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~----------------- 240 (331)
.|-....+++ -..-+.....||++||+.+.++..+|.= ..--..+|++++++|++....
T Consensus 190 IMQ~AWRERn-p~~RI~~A~~ALeIN~eCA~AyvLLAEE---Ea~Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da 265 (556)
T KOG3807|consen 190 IMQKAWRERN-PPARIKAAYQALEINNECATAYVLLAEE---EATTIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEA 265 (556)
T ss_pred HHHHHHHhcC-cHHHHHHHHHHHhcCchhhhHHHhhhhh---hhhhHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhh
Confidence 3444555543 3455666678999999999988888743 223456788888888754321
Q ss_pred --------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCc
Q 020109 241 --------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD--CYVLASYAKFLWDAGED 293 (331)
Q Consensus 241 --------d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn--a~vl~~lA~~L~klG~~ 293 (331)
-.++...+|.+..+ .|+..+|++.|....+-.|-. ..++.++-..+....-|
T Consensus 266 ~~rRDtnvl~YIKRRLAMCARk-lGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAY 327 (556)
T KOG3807|consen 266 QLRRDTNVLVYIKRRLAMCARK-LGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAY 327 (556)
T ss_pred hhhcccchhhHHHHHHHHHHHH-hhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHH
Confidence 12345567888888 999999999999888888822 23444444444444333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.07 E-value=8.1 Score=34.64 Aligned_cols=92 Identities=17% Similarity=0.044 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLYADLIWQAHKDASRAESYFDQAVKSAPD--DCY---- 278 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL~~lA~ll~~~~Gd~deAieyferALeldPd--na~---- 278 (331)
.++..+|.+++ ..||+++|.+.|.++......... .......+.+. .+++..+..++.+|-.+-.. +..
T Consensus 37 ~~~~~l~~~~~-~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~-~~d~~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 37 MALEDLADHYC-KIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIF-FGDWSHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHHHHHHHH-HhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhccchHHHHHH
Confidence 35567888865 689999999999999887655433 33445555566 79999999999999887542 222
Q ss_pred HHHHHHHHHHHcCCchHHHhhhh
Q 020109 279 VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 279 vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+...-|..++..+++.+|...+-
T Consensus 115 lk~~~gL~~l~~r~f~~AA~~fl 137 (177)
T PF10602_consen 115 LKVYEGLANLAQRDFKEAAELFL 137 (177)
T ss_pred HHHHHHHHHHHhchHHHHHHHHH
Confidence 23455778888899999987664
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.96 E-value=6.3 Score=38.56 Aligned_cols=90 Identities=16% Similarity=0.230 Sum_probs=74.2
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
.+|.++..||+..|..+...+.+ .++-+.+|.++|.+..++..--.++.....+..+-++|+
T Consensus 40 e~fr~~m~YfRAI~~~~E~S~RA------------------l~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l 101 (318)
T KOG0530|consen 40 EDFRDVMDYFRAIIAKNEKSPRA------------------LQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYL 101 (318)
T ss_pred hhHHHHHHHHHHHHhccccCHHH------------------HHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHH
Confidence 46788888888777766665554 445556777899999999888777766468899999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 267 DQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 267 erALeldPdna~vl~~lA~~L~klG~~e 294 (331)
++.++-+|.|..+|...-.++...+++.
T Consensus 102 ~eI~e~npKNYQvWHHRr~ive~l~d~s 129 (318)
T KOG0530|consen 102 DEIIEDNPKNYQVWHHRRVIVELLGDPS 129 (318)
T ss_pred HHHHHhCccchhHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999765
|
|
| >COG2912 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.74 E-value=3.1 Score=40.29 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=64.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+..|+=..|...++++.|..+.++.|..+|++|.-+..-|.++. ..+-+.-|.+-++..+...|+++++-..-+.+
T Consensus 183 ll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~-ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l 258 (269)
T COG2912 183 LLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYA-QLGCYHVALEDLSYFVEHCPDDPIAEMIRAQL 258 (269)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHH-hcCCchhhHHHHHHHHHhCCCchHHHHHHHHH
Confidence 35666677888899999999999999999999988888887754 67999999999999999999999886554443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.70 E-value=7.3 Score=37.86 Aligned_cols=119 Identities=18% Similarity=0.136 Sum_probs=76.8
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhC-----CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHH
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEAN-----PGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NILSL 247 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeld-----P~n-peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~------~vL~~ 247 (331)
+..+.+...+.++..+|++|...- |+. +.++-.-|.++ ..-+.++|+++|++++.+--++- +.+..
T Consensus 78 amLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~l--env~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 78 AMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKAL--ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 334455667778888888888762 222 22333445554 25788999999999986544332 23334
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH----HHh--CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 248 YADLIWQAHKDASRAESYFDQA----VKS--APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferA----Lel--dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+.++.+ .+.|.+|-..+.+- ++. .|..+..+.....+|.-..+|..|++..+
T Consensus 156 ~sr~lVr-l~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r 214 (308)
T KOG1585|consen 156 CSRVLVR-LEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYR 214 (308)
T ss_pred hhhHhhh-hHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 5677777 88999987777653 233 34445555666667777778988887665
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=85.55 E-value=1 Score=27.70 Aligned_cols=23 Identities=17% Similarity=0.147 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHH
Q 020109 244 ILSLYADLIWQAHKDASRAESYFD 267 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyfe 267 (331)
++..+|.+++. .|+.++|+..++
T Consensus 3 a~~~la~~~~~-~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLA-QGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHh
Confidence 34455555555 555555555443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.31 E-value=10 Score=40.25 Aligned_cols=116 Identities=14% Similarity=0.124 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHH-hCCC---CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH----HHHHHHHHHHHcCCH
Q 020109 190 SSTDAYYEKMIE-ANPG---NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNI----LSLYADLIWQAHKDA 259 (331)
Q Consensus 190 ekA~e~yekALe-ldP~---npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d~~v----L~~lA~ll~~~~Gd~ 259 (331)
..|+.|++-+++ ..+. .+.+...||.++++-..++++|+.+++|++.+... ..+. ...++.++.+ .+..
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~-~~~~ 116 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFK-TNPK 116 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHh-cCHH
Confidence 467888887774 2222 34567789999888889999999999999888743 3322 3345677776 5555
Q ss_pred HHHHHHHHHHHHhCCC---CHHH-HHHHHH--HHHHcCCchHHHhhhhhccccc
Q 020109 260 SRAESYFDQAVKSAPD---DCYV-LASYAK--FLWDAGEDEEEEQDNEEGQHQT 307 (331)
Q Consensus 260 deAieyferALeldPd---na~v-l~~lA~--~L~klG~~eEa~~~~e~~~~~~ 307 (331)
. |..+++++++..-. ..+. .+.+.. .+...+++.-|...++.+....
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 5 99999999988654 2222 222221 2222357777777776555443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=85.00 E-value=18 Score=37.86 Aligned_cols=119 Identities=10% Similarity=0.030 Sum_probs=90.2
Q ss_pred HHHHhCCCcHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 181 NYSNNNHGSSSTDAYYEKMIEANPGNALLLG-----NYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 181 ~~y~~~gd~ekA~e~yekALeldP~npeal~-----~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
-.+.+++++.+|...|.|....-.+.+..+- +.-.-.| ...+.+.-+.+.-..-+..|+.+++..-.|...++
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAf-fl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~- 91 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAF-FLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYK- 91 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH-
Confidence 4678899999999999999988777754433 2221112 35888888889888899999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHh----CC-----------CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKS----AP-----------DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALel----dP-----------dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+++++|++.+..--.. .| .+...-...|+++..+|++.|+..++.
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 99999999887644333 11 122223456999999999999987765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.67 E-value=18 Score=38.79 Aligned_cols=114 Identities=17% Similarity=0.183 Sum_probs=76.4
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHH---------------------hCCCCHHHH---HHHHHHHHHHcCCHHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIE---------------------ANPGNALLL---GNYARFLKEVRGDFAKAEELCGR 233 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALe---------------------ldP~npeal---~~yA~lLy~~~GdyeeAee~~er 233 (331)
-+|.....+|+.+-|....+++|= +.|.|-.++ +.|-..+. ..|=+.-|.++|+.
T Consensus 289 qva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~-~RGC~rTA~E~cKl 367 (665)
T KOG2422|consen 289 QVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLA-QRGCWRTALEWCKL 367 (665)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHH-hcCChHHHHHHHHH
Confidence 367777888887776666666654 244443332 33344443 56888999999999
Q ss_pred HHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 234 AILANPS-DGNILSLYADLIWQAHKDASRAESYFDQA-----VKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 234 AL~ldP~-d~~vL~~lA~ll~~~~Gd~deAieyferA-----LeldPdna~vl~~lA~~L~klG~~ 293 (331)
.++++|. ||.....+-++|....++|+=-+.+++.. +..-|+-.+ -..+|.+|......
T Consensus 368 llsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~y-S~AlA~f~l~~~~~ 432 (665)
T KOG2422|consen 368 LLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGY-SLALARFFLRKNEE 432 (665)
T ss_pred HhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchH-HHHHHHHHHhcCCh
Confidence 9999999 99988777777755478887777777765 445565443 34556666665543
|
|
| >KOG2422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.08 E-value=14 Score=39.66 Aligned_cols=95 Identities=15% Similarity=0.139 Sum_probs=70.2
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHH-----HHhCCCCHHHHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRA-----ILANPSDGNILSLYADLI 252 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erA-----L~ldP~d~~vL~~lA~ll 252 (331)
|-..+.++|=+..|.+++.-.+.++|. ||.....+-+++.+...+|+==+++++.+ +..-|+-++.+. +|.++
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~yS~A-lA~f~ 426 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFGYSLA-LARFF 426 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCchHHHH-HHHHH
Confidence 344566778889999999999999998 99887777666666667776656665555 566677776643 55555
Q ss_pred HHHcC--CHHHHHHHHHHHHHhCC
Q 020109 253 WQAHK--DASRAESYFDQAVKSAP 274 (331)
Q Consensus 253 ~~~~G--d~deAieyferALeldP 274 (331)
..... +.+.|...+.||++..|
T Consensus 427 l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 427 LRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred HhcCChhhHHHHHHHHHHHHHhCc
Confidence 55133 26789999999999988
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.00 E-value=19 Score=38.10 Aligned_cols=86 Identities=15% Similarity=0.023 Sum_probs=57.6
Q ss_pred HcCCHHHHHHHHHHHHHhC---C------CCHHHHHHHHHHHHHHcCCHHHHHHHHH--------HHHHhCCCCH---HH
Q 020109 220 VRGDFAKAEELCGRAILAN---P------SDGNILSLYADLIWQAHKDASRAESYFD--------QAVKSAPDDC---YV 279 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ld---P------~d~~vL~~lA~ll~~~~Gd~deAieyfe--------rALeldPdna---~v 279 (331)
..+++.+|....+.+.... | ..+..++..|..+.. .|+.+.|+.+|. .+....+.+. .+
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~-~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQS-TGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHH-cCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 4689999988888777553 2 247778888888887 999999999998 4445555333 23
Q ss_pred HHHHHHHHHHcCCchH----HHhhhhhcccc
Q 020109 280 LASYAKFLWDAGEDEE----EEQDNEEGQHQ 306 (331)
Q Consensus 280 l~~lA~~L~klG~~eE----a~~~~e~~~~~ 306 (331)
..++..++...+...+ ....++.++..
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~ 482 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPL 482 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCcc
Confidence 3456666666665444 44555544443
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.97 E-value=8.3 Score=36.93 Aligned_cols=71 Identities=24% Similarity=0.174 Sum_probs=59.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
-+.+.+...+|+...+.-++.+|.++...-.|-++++ ..|+|++|...++-+-+++|++..-...|-.+..
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlc-vaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLC-VAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHh-hcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3455678899999999999999999988877888876 7899999999999999999998776555554443
|
|
| >KOG4814 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=83.56 E-value=7.4 Score=42.19 Aligned_cols=77 Identities=9% Similarity=0.009 Sum_probs=64.4
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 221 RGDFAKAEELCGRAILANPSDGN------ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 221 ~GdyeeAee~~erAL~ldP~d~~------vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
..+|..+.+.|...+..-|.|.+ ..+.++.+|.. ..+.|+|.++++.|-+.+|.++......-......++-+
T Consensus 367 ~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~-L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se 445 (872)
T KOG4814|consen 367 MEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLK-LEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSE 445 (872)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchH
Confidence 48999999999999988887654 45678888888 999999999999999999999887777766666677777
Q ss_pred HHHh
Q 020109 295 EEEQ 298 (331)
Q Consensus 295 Ea~~ 298 (331)
+|-.
T Consensus 446 ~AL~ 449 (872)
T KOG4814|consen 446 EALT 449 (872)
T ss_pred HHHH
Confidence 7763
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.27 E-value=24 Score=32.81 Aligned_cols=108 Identities=14% Similarity=0.154 Sum_probs=71.3
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHH----HHHHcCCHHHHHHHHHHH-HHhCCCCHHHHHHHHHHHH
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARF----LKEVRGDFAKAEELCGRA-ILANPSDGNILSLYADLIW 253 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~l----Ly~~~GdyeeAee~~erA-L~ldP~d~~vL~~lA~ll~ 253 (331)
.|-.+.++|+...|..+|..+- .+..-|.....+|.+ +....|-|+.-....+.+ ...+|--..+.-.++...|
T Consensus 100 ~at~~a~kgdta~AV~aFdeia-~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~ 178 (221)
T COG4649 100 AATLLAQKGDTAAAVAAFDEIA-ADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAY 178 (221)
T ss_pred HHHHHhhcccHHHHHHHHHHHh-ccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHH
Confidence 4556778889999999998744 444456655444432 223457787765555543 3344445556778899999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
+ .|++.+|..+|++... +..-+....+.+.+.++
T Consensus 179 k-agd~a~A~~~F~qia~-Da~aprnirqRAq~mld 212 (221)
T COG4649 179 K-AGDFAKAKSWFVQIAN-DAQAPRNIRQRAQIMLD 212 (221)
T ss_pred h-ccchHHHHHHHHHHHc-cccCcHHHHHHHHHHHH
Confidence 9 9999999999999887 44444444555554443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.10 E-value=5.2 Score=38.96 Aligned_cols=51 Identities=20% Similarity=0.077 Sum_probs=30.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALe 271 (331)
.+++++.+.+.+++.+..+|.|-..+..+-..+.+ .|+...|+..|+++-+
T Consensus 165 ~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~-~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 165 ACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLV-NGRQSAAIRAYRQLKK 215 (280)
T ss_pred hcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHH-cCCchHHHHHHHHHHH
Confidence 44556666666666666666666555555555555 6666666666655544
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=82.93 E-value=7.5 Score=47.23 Aligned_cols=111 Identities=11% Similarity=-0.024 Sum_probs=83.2
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--------H-----
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--------G----- 242 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d--------~----- 242 (331)
..++|++....|.++.|-.+.-+|.+.. -+++....|..++ ..||...|..++++.+.++--+ |
T Consensus 1673 wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW-~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~ 1749 (2382)
T KOG0890|consen 1673 WLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLW-QTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNL 1749 (2382)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHH-hhccHHHHHHHHHHHHHhhcccccCCccccchhhhh
Confidence 4578999999999999999999999888 5778888999998 5799999999999999665433 1
Q ss_pred ----HHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 243 ----NILSLYADLIWQAHKDA--SRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 243 ----~vL~~lA~ll~~~~Gd~--deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
.++..++...-. .+++ +.-+++|..+++..|...+-++.+|..|.+.
T Consensus 1750 ~i~~~~~L~~~~~~~e-s~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kl 1802 (2382)
T KOG0890|consen 1750 LIFKKAKLKITKYLEE-SGNFESKDILKYYHDAKAILPEWEDKHYHLGKYYDKL 1802 (2382)
T ss_pred hhhhhHHHHHHHHHHH-hcchhHHHHHHHHHHHHHHcccccCceeeHHHHHHHH
Confidence 122233333333 3433 3457999999999997777777777666554
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=82.80 E-value=6.6 Score=31.25 Aligned_cols=55 Identities=18% Similarity=0.133 Sum_probs=39.8
Q ss_pred hCCCcHHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 185 NNHGSSSTDAYYEKMIEA----NPGN-----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 185 ~~gd~ekA~e~yekALel----dP~n-----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
..++|..|.+.+.+.+.. +... ..++.++|.+.. ..|++++|...+++||.+...
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~-~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHR-RFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHH
Confidence 457899997777776665 2222 345667787764 689999999999999876543
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=82.40 E-value=8.9 Score=32.51 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=63.9
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHH---cCC-------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQA---HKD-------ASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~---~vL~~lA~ll~~~---~Gd-------~deAieyferALeldPdna~vl~~lA~~ 286 (331)
..||+-+|+++.+.++...+++. .++..-|.++++. ..+ .--|++.|.+++.+.|+.+..++.+|.-
T Consensus 8 ~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~la~~ 87 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFELASQ 87 (111)
T ss_pred HccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHHHHH
Confidence 58999999999999999999877 3444445555431 122 2346888999999999999999999988
Q ss_pred HHHcCCchHHHhhhhhc
Q 020109 287 LWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 287 L~klG~~eEa~~~~e~~ 303 (331)
+-..-.|+++-..++++
T Consensus 88 l~s~~~Ykk~v~kak~~ 104 (111)
T PF04781_consen 88 LGSVKYYKKAVKKAKRG 104 (111)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 77777788887777643
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=82.25 E-value=5.8 Score=31.77 Aligned_cols=52 Identities=6% Similarity=-0.027 Sum_probs=37.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYAD---LIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~---ll~~~~Gd~deAieyferALel 272 (331)
..++.++|+..|.+|++..++.+.-+..+|. ++.. .|+|.++++|..+-+++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e-~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHME-WGKYREMLAFALQQLEI 72 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 3577788888888888888887766555544 4455 68888888877766655
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=82.18 E-value=21 Score=35.91 Aligned_cols=59 Identities=14% Similarity=0.031 Sum_probs=42.0
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH--HHHHHH--HHHHHHcCCHHHHHHHHHHHHHh
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNAL--LLGNYA--RFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npe--al~~yA--~lLy~~~GdyeeAee~~erAL~l 237 (331)
..+.-++..++|..|...|..++..-|.+.. .+..++ ...| ...++.+|.+++++.+..
T Consensus 136 ~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~W-D~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 136 RRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAW-DRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHH
Confidence 4566788899999999999999986444444 333333 2234 467899999999977653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.08 E-value=8 Score=37.67 Aligned_cols=64 Identities=9% Similarity=0.015 Sum_probs=57.2
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
...++..++..+.. .++++.+++.+++.++.+|.+-..|..+...|++.|+...|+..++.+..
T Consensus 152 ~~~~l~~lae~~~~-~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 152 FIKALTKLAEALIA-CGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHh-cccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 56677788888888 99999999999999999999999999999999999999999988775544
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=81.58 E-value=11 Score=42.59 Aligned_cols=96 Identities=14% Similarity=-0.049 Sum_probs=73.4
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVR---G---DFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~---G---dyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.+...+.|++|+..|++.-.-.|+- .++.+..|..+.+.. + .+.+|..-|++.-. .|.-|-=+...|.+|
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 484 AFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHG-GVGAPLEYLGKALVY 562 (932)
T ss_pred HHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcC-CCCCchHHHhHHHHH
Confidence 4455689999999999999999874 556677776543321 2 46677777776543 566676677788888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~v 279 (331)
.+ .++++|-++.|.-|++..|..+.+
T Consensus 563 ~~-~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 563 QR-LGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred HH-hhhHHHHHHHHHHHHHhcCCCCcc
Confidence 88 999999999999999999977753
|
|
| >KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=80.46 E-value=1.5 Score=44.01 Aligned_cols=77 Identities=9% Similarity=0.014 Sum_probs=52.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
..|.+.+..+.+++..|...-..+++.++....+++..+... ....++++|++.++.|.+..|++......+...-.
T Consensus 278 ~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~-~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~ 354 (372)
T KOG0546|consen 278 RRNLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAY-KLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQ 354 (372)
T ss_pred ccchHHhcccccCCCcceeccccccccChhhCcHHHHHHhHH-HhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhh
Confidence 345666666667777777777777777777777777766663 35677778888888888888877776665554443
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=80.01 E-value=6 Score=41.00 Aligned_cols=126 Identities=12% Similarity=0.037 Sum_probs=77.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI---LANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL---~ldP~d~~vL~~lA~ll~~ 254 (331)
-+.-||...++.+-|..+..+.|.+||....-+..-|.++ +...+|.+|.+-+=-|. -++-.+-.....+-.+||+
T Consensus 233 klv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavf-R~LeRy~eAarSamia~ymywl~g~~~q~~S~lIklyWq 311 (569)
T PF15015_consen 233 KLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVF-RRLERYSEAARSAMIADYMYWLSGGSEQRISKLIKLYWQ 311 (569)
T ss_pred HHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHHHHHH
Confidence 4566888999999999999999999998888777777775 45678888766554442 3344344444556667776
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcccccCCCCCCCCCccCC
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHTSPPNFFHG 320 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~~~~~~~~~~~~~~f~~ 320 (331)
...++|+...+.....|.=.+. ..+..+-++...+.. .+||.|-.-+|..
T Consensus 312 ---------amiEeAiTr~esfsVmYtPfat-ki~~d~iek~k~~F~------k~HPaY~~~IytD 361 (569)
T PF15015_consen 312 ---------AMIEEAITRAESFSVMYTPFAT-KIKADKIEKVKEVFT------KTHPAYVEYIYTD 361 (569)
T ss_pred ---------HHHHHHHhcccceeEEeecccc-cccHHHHHHHHHHHH------hhCccceeEEecc
Confidence 4567777777655444333332 223333333333332 4555554444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.77 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.75 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.75 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.74 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.72 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.69 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.69 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.69 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.68 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.68 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.67 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.67 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.67 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.66 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.66 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.64 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.64 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.63 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.63 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.63 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.62 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.62 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.61 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.61 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.61 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.61 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.61 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.61 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.61 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.6 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.59 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.59 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.59 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.59 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.58 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.58 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.58 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.58 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.58 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.58 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.58 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.57 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.57 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.57 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.56 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.56 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.56 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.56 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.55 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.55 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.55 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.55 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.55 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.55 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.54 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.54 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.53 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.53 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.52 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.52 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.52 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.51 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.51 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.51 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.5 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.5 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.5 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.48 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 99.48 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.48 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.48 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.48 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.47 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.47 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.46 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.46 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.46 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.46 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.45 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.45 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.45 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.45 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.45 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.43 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 99.43 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.42 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.42 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.42 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.41 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.4 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.4 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.39 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.39 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.38 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.37 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.37 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.36 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.36 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.36 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.35 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.34 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.34 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.34 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.34 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.34 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.33 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.33 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.33 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.32 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.32 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.31 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.31 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 99.3 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.3 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.3 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.3 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.29 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.28 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.27 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.26 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.26 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.26 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.24 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.24 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.24 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.24 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.24 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.23 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.22 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 99.22 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.2 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.2 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.19 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.19 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 99.19 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.18 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.18 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.18 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.16 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 99.16 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.15 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 99.15 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.14 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.14 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 99.14 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 99.08 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.07 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.06 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.05 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 99.03 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.02 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.0 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.99 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.98 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.96 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.96 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 98.96 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 98.95 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.94 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.94 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.92 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.91 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.89 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.86 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.83 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.83 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.82 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.81 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 98.79 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 98.79 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.78 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.76 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.73 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.73 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.72 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.67 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.63 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.62 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.61 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.59 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.58 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.54 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.51 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.43 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 98.42 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.4 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.39 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.34 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.32 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.28 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.26 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.23 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.12 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 98.11 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 98.02 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 97.96 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.96 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.94 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.92 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.86 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.76 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 97.67 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.64 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.59 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.55 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.32 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 97.24 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.2 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 97.05 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 96.98 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.94 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 96.91 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 96.56 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 96.5 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.49 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 95.11 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 94.25 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 94.21 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.89 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 93.41 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 93.35 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.22 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 92.63 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.35 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 91.15 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.57 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 89.79 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 89.73 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.39 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 87.71 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.39 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 81.76 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 81.74 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 81.28 |
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.77 E-value=8.8e-18 Score=137.26 Aligned_cols=110 Identities=17% Similarity=0.185 Sum_probs=105.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..|.|+.|++.|+|++|+.+|+++|+++|.++.++.++|.++. ..|++++|+++|++||+++|+++.++..+|.+++.
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~- 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLT-KLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVA- 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHH-hhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence 4588999999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
.|++++|+++|+++++++|++..++..++.|+
T Consensus 94 ~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l 125 (126)
T 4gco_A 94 MREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence 99999999999999999999999999998875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.2e-18 Score=145.77 Aligned_cols=118 Identities=9% Similarity=0.061 Sum_probs=63.4
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
++|..+..++++++|++.|++++..+|+++..++.+|.+++ ..|++++|+++|++||+++|+++.++..+|.++.. .|
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~-~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~ 79 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYY-EAKEYDLAKKYICTYINVQERDPKAHRFLGLLYEL-EE 79 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cC
Confidence 34444455555555555555555555555555555555543 34555555555555555555555555555555555 55
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++++|+.+|+++++++|+++.++..+|.+|.+.++++++.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa 119 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRA 119 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 5555555555555555555555555555555555554444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=139.12 Aligned_cols=118 Identities=16% Similarity=0.122 Sum_probs=109.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|.+.+++++|+.+|+++|+++|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.++
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYE-LEENTDKAVECYRRSVELNPTQKDLVLKIAELL 109 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3446789999999999999999999999999999999999999965 789999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 253 WQAHKDASRAESY-FDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 253 ~~~~Gd~deAiey-ferALeldPdna~vl~~lA~~L~klG~ 292 (331)
++ .+++++|... +++|++++|+++.++..++.++...|+
T Consensus 110 ~~-~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 110 CK-NDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HH-HCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HH-cCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 99 9999877665 699999999999999999999988886
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=144.29 Aligned_cols=125 Identities=14% Similarity=-0.020 Sum_probs=78.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..+...+++++|+.+|+++|+.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++..+|.++..
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 85 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA 85 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 34556666666666666666666666666666666666666643 45666666666666666666666666666666666
Q ss_pred Hc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AH-----------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~-----------Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. |++++|+..|+++++++|++..++..+|.++...|++++|+..++
T Consensus 86 -~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~ 142 (217)
T 2pl2_A 86 -LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLK 142 (217)
T ss_dssp -HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred -hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 5 666666666666666666666666666666666666666665444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=133.77 Aligned_cols=128 Identities=13% Similarity=0.063 Sum_probs=95.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-----------------------------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG----------------------------- 222 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G----------------------------- 222 (331)
+.....|+|..|..+|++++|+.+|+++|+++|+++.++..+|.++. ..|
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 34456788999999999999999999999999999999998888754 344
Q ss_pred -----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 223 -----DFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 223 -----dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++++|.+++.+++.++|+++.++..+|.++.. .|++++|+++|+++++++|+++.++..+|.+|..+|++++|.
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS-MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 55555666666666666666666666777776 777777777777777777777777777777777777777777
Q ss_pred hhhh
Q 020109 298 QDNE 301 (331)
Q Consensus 298 ~~~e 301 (331)
..++
T Consensus 162 ~~~~ 165 (184)
T 3vtx_A 162 KYFK 165 (184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-17 Score=143.87 Aligned_cols=127 Identities=20% Similarity=0.098 Sum_probs=110.3
Q ss_pred CCcccccHHHHHHhC-----------CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 172 GSGFSGSNNNYSNNN-----------HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~-----------gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
+.....|+|.+|... |++++|+.+|+++++++|+++.++.++|.++. ..|++++|+.+|++|++++ +
T Consensus 72 ~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~-~ 149 (217)
T 2pl2_A 72 YLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYA-LLGERDKAEASLKQALALE-D 149 (217)
T ss_dssp CHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHC-C
T ss_pred cHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-HcCChHHHHHHHHHHHhcc-c
Confidence 455678999999999 99999999999999999999999999999975 6899999999999999999 9
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.++..+|.++.. .|++++|+.+|+++++++|++..++..++.++...|++++|...++
T Consensus 150 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 150 TPEIRSALAELYLS-MGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp CHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC------------
T ss_pred chHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999999999999 9999999999999999999999999999999999999999998887
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=7.9e-17 Score=169.16 Aligned_cols=127 Identities=18% Similarity=0.164 Sum_probs=87.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
...+.|+|..|.++|++++|+.+|++||+++|+++.+++++|.++. ..|++++|+++|++||+++|+++.++..+|.++
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456677777777777777777777777777777777777776654 567777777777777777777777777777776
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+++|++|++++|+++.++.++|.+|..+|++++|+..++
T Consensus 88 ~~-~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~ 135 (723)
T 4gyw_A 88 KE-MQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135 (723)
T ss_dssp HH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66 6777777777777777777777777777777777777766665444
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.2e-16 Score=128.48 Aligned_cols=104 Identities=13% Similarity=-0.025 Sum_probs=96.3
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....+++.++...++++.|..++.+++..+|+++.++..+|.++. ..|++++|+++|+++++++|+++.++..+|.++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~ 151 (184)
T 3vtx_A 73 AEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD-SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAY 151 (184)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHH
Confidence 3446678899999999999999999999999999999999999965 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~ 278 (331)
+. .|++++|+.+|++|++++|+++.
T Consensus 152 ~~-~g~~~~A~~~~~~al~~~p~~a~ 176 (184)
T 3vtx_A 152 EG-KGLRDEAVKYFKKALEKEEKKAK 176 (184)
T ss_dssp HH-TTCHHHHHHHHHHHHHTTHHHHH
T ss_pred HH-CCCHHHHHHHHHHHHhCCccCHH
Confidence 99 99999999999999999997653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-16 Score=121.55 Aligned_cols=120 Identities=17% Similarity=0.109 Sum_probs=113.4
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.......++|..+...+++++|+.+|+++++.+|+++.++..+|.++. ..+++++|+++|++++..+|+++.++..+|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYT-KLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHT-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 455668899999999999999999999999999999999999999965 6899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
+++. .|++++|+.+|+++++++|.+..++..++.++...++
T Consensus 93 ~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEA-MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHH-HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 9999 9999999999999999999999999999999998764
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=1.6e-15 Score=116.96 Aligned_cols=118 Identities=21% Similarity=0.233 Sum_probs=111.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..+...+++++|+.+|++++..+|+++.++..+|.++. ..+++++|.++|++++..+|+++.++..+|.+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYS-KLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
.+++++|+.+|+++++++|++..++..++.++...|+++
T Consensus 93 -~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 93 -LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp -TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred -hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999998763
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3e-16 Score=164.81 Aligned_cols=128 Identities=18% Similarity=0.082 Sum_probs=121.8
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....|+|..|...|++++|+.+|++||+++|+++.+++++|.++. ..|++++|+++|++||+++|+++.++..+|.+
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~ 120 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK-EMQDVQGALQCYTRAIQINPAFADAHSNLASI 120 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45568899999999999999999999999999999999999999975 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. .|++++|+++|++|++++|+++.++.+++.+|..++++++|++.++
T Consensus 121 ~~~-~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ 169 (723)
T 4gyw_A 121 HKD-SGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169 (723)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999986544
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=121.29 Aligned_cols=113 Identities=19% Similarity=0.076 Sum_probs=106.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+.+.|..+...+++++|+.+|+++|+.+|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.+++.
T Consensus 7 ~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~- 84 (126)
T 3upv_A 7 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALA-KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA- 84 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 4678999999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHc
Q 020109 256 HKDASRAESYFDQAVKSA------PDDCYVLASYAKFLWDA 290 (331)
Q Consensus 256 ~Gd~deAieyferALeld------Pdna~vl~~lA~~L~kl 290 (331)
.|++++|+.+|+++++++ |++..++..+..+..++
T Consensus 85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l 125 (126)
T 3upv_A 85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR 125 (126)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence 999999999999999999 99999999998887654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.1e-15 Score=132.50 Aligned_cols=127 Identities=13% Similarity=0.087 Sum_probs=120.2
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP-~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+....+.|..+...+++++|+.+|+++++.+| .++.+++++|.++. ..|++++|+++|++|+..+|+++.++..+|.+
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 45677899999999999999999999999999 89999999999865 78999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDC-------YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna-------~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. .|++++|+.+|+++++++|++. .++..+|.++...|++++|+..++
T Consensus 86 ~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~ 141 (228)
T 4i17_A 86 YRD-MKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYK 141 (228)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHH
Confidence 999 9999999999999999999999 669999999999999999998876
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=6.2e-16 Score=134.98 Aligned_cols=117 Identities=12% Similarity=0.116 Sum_probs=109.3
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGN----------------YARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~----------------yA~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
+...|..+...|++++|+.+|+++++.+|+++.+++. +|.++. ..|++++|+.+|++|++++|
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p 85 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK-KNRNYDKAYLFYKELLQKAP 85 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHCC
Confidence 3457888999999999999999999999999999999 999865 78999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
+++.++..+|.+++. .|++++|+.+|+++++++|+++.+++.+|.+|+..++.+
T Consensus 86 ~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~ 139 (208)
T 3urz_A 86 NNVDCLEACAEMQVC-RGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE 139 (208)
T ss_dssp TCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence 999999999999999 999999999999999999999999999999998776543
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.67 E-value=9.4e-16 Score=127.65 Aligned_cols=116 Identities=16% Similarity=0.124 Sum_probs=106.1
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
...+.++|..|...+++++|+.+|+++|+++|+++.+++++|.+++ ..|++++|+.+|++|+.++|+++.++..+|.++
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYS-ASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3457789999999999999999999999999999999999999975 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
+. .|++++|+.+|+++++++|++..+++..+....+.
T Consensus 90 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 126 (164)
T 3sz7_A 90 FD-MADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKR 126 (164)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HH-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHH
Confidence 99 99999999999999999999988666666554443
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.2e-15 Score=122.20 Aligned_cols=124 Identities=19% Similarity=0.093 Sum_probs=114.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|.++|++++.++|+++.++..+|.++..
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~- 93 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA- 93 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence 5678999999999999999999999999999999999999965 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKF--LWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~--L~klG~~eEa~~~~e 301 (331)
.|++++|+.+|+++++++|++..++..++.+ +...|++++|....+
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 141 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 141 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 9999999999999999999999888555544 888899999987655
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.66 E-value=4.1e-15 Score=114.34 Aligned_cols=125 Identities=17% Similarity=0.235 Sum_probs=118.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|..+|++++..+|.++.++..+|.++..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~- 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK- 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH-
Confidence 4578899999999999999999999999999999999999865 67999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.|++++|+.+|+++++..|.+..++..++.++...|++++|...+++
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 128 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQK 128 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999977763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.5e-15 Score=129.47 Aligned_cols=104 Identities=13% Similarity=0.072 Sum_probs=90.3
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+....+++|..|...|++++|+.+|++++.++|+++.+|.++|.++. ..|++++|+.+|++|++++|+++.++..+|.+
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~-~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQ-IKEQFQQAADLYAVAFALGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence 34457788888999999999999999999999999999999988865 67899999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna 277 (331)
++. .|++++|+.+|++++++.|+..
T Consensus 114 ~~~-lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 114 QLR-LKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCHH
Confidence 888 9999999999999999988765
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.7e-15 Score=119.39 Aligned_cols=128 Identities=14% Similarity=0.010 Sum_probs=120.4
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..+++++|.++|++++..+|.++.++..+|.++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence 4567789999999999999999999999999999999999999865 679999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.. .|++++|+.+|+++++..|++..++..++.++...|++++|...++.
T Consensus 121 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 169 (186)
T 3as5_A 121 DN-LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK 169 (186)
T ss_dssp HH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999987763
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.65 E-value=8.7e-17 Score=137.13 Aligned_cols=112 Identities=10% Similarity=-0.002 Sum_probs=104.0
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFD 267 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyfe 267 (331)
++..+...|+++++++|+++.+++.+|.+++ ..|++++|+.+|++|+.++|+++.++..+|.++.. .|++++|+.+|+
T Consensus 17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~-~g~~~~Ai~~~~ 94 (151)
T 3gyz_A 17 DAINSGATLKDINAIPDDMMDDIYSYAYDFY-NKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQI-KEQFQQAADLYA 94 (151)
T ss_dssp HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHH
T ss_pred HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HccHHHHHHHHH
Confidence 3444556677888899999999999999976 68999999999999999999999999999999999 999999999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 268 QAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 268 rALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|++++|+++.+|+++|.+|..+|++++|...++
T Consensus 95 ~al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~ 128 (151)
T 3gyz_A 95 VAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFE 128 (151)
T ss_dssp HHHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999998776
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=1.5e-15 Score=147.62 Aligned_cols=128 Identities=11% Similarity=0.001 Sum_probs=117.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd-yeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+.....+++.+|...+++++|+.+|+++|+++|+++.+|+++|.++. ..|+ +++|+.+|++||.++|+++.++..+|.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~-~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~ 174 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence 44567889999999999999999999999999999999999999975 5785 999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.. .|++++|+.+|++||+++|++..+|+++|.++..+|++++|...++
T Consensus 175 ~~~~-~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~ 224 (382)
T 2h6f_A 175 LVEW-LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 224 (382)
T ss_dssp HHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred HHHH-ccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999987665
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.5e-14 Score=110.51 Aligned_cols=116 Identities=18% Similarity=0.241 Sum_probs=109.4
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|..+...+++++|+.+|++++..+|.++.++..+|.++. ..+++++|..+|++++..+|.++.++..+|.+++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 456788999999999999999999999999999999999999975 6899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
. .+++++|+.+|+++++.+|++..++..++.++...|
T Consensus 89 ~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 89 K-QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp H-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred H-hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 9 999999999999999999999999999999987654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.64 E-value=2.1e-15 Score=123.50 Aligned_cols=115 Identities=13% Similarity=-0.079 Sum_probs=102.7
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|..+...+++++|+.+|++++..+|+++.++..+|.++. ..|++++|+.+|++|+.++|+++.++..+|.+++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQ-SLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999965 6899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
. .|++++|+.+|+++++++|+++........+...+
T Consensus 98 ~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l 133 (142)
T 2xcb_A 98 Q-LGDLDGAESGFYSARALAAAQPAHEALAARAGAML 133 (142)
T ss_dssp H-TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHH
T ss_pred H-cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHH
Confidence 9 99999999999999999998876665555444433
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=125.96 Aligned_cols=107 Identities=8% Similarity=-0.043 Sum_probs=97.3
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|..+...|++++|+.+|++++..+|+++.++.++|.++. ..|++++|+.+|++|+.++|+++.++..+|.++
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQ-AMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3456788999999999999999999999999999999999999865 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
.. .|++++|+.+|+++++++|+++....
T Consensus 100 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 100 LQ-XGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HH-TTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred HH-cCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 99 99999999999999999998775543
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=141.01 Aligned_cols=122 Identities=14% Similarity=0.046 Sum_probs=116.1
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---------------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
...++|..|...+++++|+.+|++||+++|++ ..++.++|.++. ..+++++|+.+|++|++++|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCC
Confidence 46789999999999999999999999999999 689999999965 78999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
+++.++..+|.+++. .|++++|+.+|++|++++|++..++..++.++..++++++++.
T Consensus 228 ~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 9999999999999999999999999999999999999998853
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=110.12 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=104.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|++++..+|.++.++..+|.++. ..+++++|..++++++..+|+++.++..+|.++..
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~- 84 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF- 84 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-hhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH-
Confidence 4578899999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
.|++++|+.+|+++++.+|++..++..++.+..
T Consensus 85 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 117 (118)
T 1elw_A 85 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 117 (118)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence 999999999999999999999999999887753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.5e-15 Score=130.33 Aligned_cols=119 Identities=14% Similarity=0.085 Sum_probs=112.4
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-------NIL 245 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~-------~vL 245 (331)
.....|+|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|+++++++|+++ .++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 120 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYY 120 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999975 78999999999999999999999 668
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCc
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKSAPD--DCYVLASYAKFLWDAGED 293 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALeldPd--na~vl~~lA~~L~klG~~ 293 (331)
..+|.+++. .|++++|+++|+++++++|+ ++.++..+|.++...|+.
T Consensus 121 ~~~g~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 121 LKEGQKFQQ-AGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHH-hccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 999999999 99999999999999999999 999999999999999887
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2e-14 Score=123.14 Aligned_cols=128 Identities=15% Similarity=0.176 Sum_probs=109.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|.++|+++++.+|+++.++..+|.++
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 135 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTVL 135 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4566778888888888899999999988888888888888888864 678888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.. .|++++|+.+|+++++..|++..++..++.++...|++++|...+++
T Consensus 136 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 136 VK-LEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HH-TSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HH-hccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88 88888888888888888888888888888888888888888876663
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=123.40 Aligned_cols=128 Identities=13% Similarity=-0.006 Sum_probs=121.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+.+|+++++.+|+++.++..+|.++
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 169 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCL 169 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999865 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+. .|++++|+.+|+++++.+|++..++..++.++...|++++|...+++
T Consensus 170 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 218 (243)
T 2q7f_A 170 AN-EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDK 218 (243)
T ss_dssp HH-HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99 99999999999999999999999999999999999999999987763
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-14 Score=124.64 Aligned_cols=127 Identities=16% Similarity=0.061 Sum_probs=118.7
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIE--------------------------ANPGNALLLGNYARFLKEVRGDFAKA 227 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALe--------------------------ldP~npeal~~yA~lLy~~~GdyeeA 227 (331)
....++|.+|...+++++|+.+|++++. .+|.++.++..+|.++. ..|++++|
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A 158 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF-TKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-HTTCHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH-HhcCHHHH
Confidence 4567899999999999999999999999 67777888999999875 68999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 228 EELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 228 ee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
..+|++++..+|+++.++..+|.++.. .|++++|+.+|+++++.+|++..++..+|.++...|++++|...++.
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999999999999999999999 99999999999999999999999999999999999999999977663
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.61 E-value=8.8e-15 Score=134.58 Aligned_cols=128 Identities=12% Similarity=0.128 Sum_probs=112.0
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
....+++.+|...+++++|+.+|+++++.+|+ ++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.+
T Consensus 178 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 256 (365)
T 4eqf_A 178 GLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH-LSGEFNRAIDAFNAALTVRPEDYSLWNRLGAT 256 (365)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 44567788999999999999999999999999 9999999999975 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+.. .|++++|+.+|+++++++|++..++..+|.+|..+|++++|...++..
T Consensus 257 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 257 LAN-GDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999 999999999999999999999999999999999999999999777643
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=126.73 Aligned_cols=107 Identities=12% Similarity=-0.026 Sum_probs=102.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 193 ~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
..+|++++.++|+++.+++.+|.+++ ..|++++|+.+|++++.++|+++.++..+|.++.. .|++++|+.+|++++++
T Consensus 7 ~~~~~~al~~~p~~~~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 7 GGTIAMLNEISSDTLEQLYSLAFNQY-QSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA-MGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CCSHHHHTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred hhhHHHHHcCCHhhHHHHHHHHHHHH-HcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhc
Confidence 45688999999999999999999976 68999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 273 APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 273 dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|+++.+++.+|.+|..+|++++|...++
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 113 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLF 113 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998776
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.1e-15 Score=116.74 Aligned_cols=119 Identities=13% Similarity=0.003 Sum_probs=108.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|..+...+++++|+.+|++++..+|+++.++.++|.++. ..+++++|+.+|++++.++|+++.++..+|.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 34557789999999999999999999999999999999999999975 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCC
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPD-----DCYVLASYAKFLWDAGE 292 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPd-----na~vl~~lA~~L~klG~ 292 (331)
++. .|++++|+.+|+++++++|+ +..++..+..+..+...
T Consensus 87 ~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~ 131 (137)
T 3q49_B 87 QLE-MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWN 131 (137)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHH
T ss_pred HHH-HhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999 99999999999999999998 77777777776655543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=118.60 Aligned_cols=126 Identities=12% Similarity=0.056 Sum_probs=119.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..+...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|.++++++++.+|+++.++..+|.++..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYV-KTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999865 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.+++++|+++|+++++..|++..++..+|.++...|++++|...+++
T Consensus 89 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 135 (186)
T 3as5_A 89 -VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKI 135 (186)
T ss_dssp -HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.61 E-value=2.9e-15 Score=124.40 Aligned_cols=116 Identities=15% Similarity=0.084 Sum_probs=105.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA------------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA 237 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel------------------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l 237 (331)
+.+.|..++..++|++|+.+|+++|.. +|.+..++.++|.++. ..|++++|+.+|++||.+
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYL-NIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhc
Confidence 457899999999999999999999999 7777899999999965 689999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHcCCc
Q 020109 238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC-YVLASYAKFLWDAGED 293 (331)
Q Consensus 238 dP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna-~vl~~lA~~L~klG~~ 293 (331)
+|+++.++..+|.++.. .|++++|+.+|+++++++|++. .+...+..+.....+.
T Consensus 93 ~p~~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~ 148 (162)
T 3rkv_A 93 EETNEKALFRRAKARIA-AWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEK 148 (162)
T ss_dssp STTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHHHH-HhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 9999999999999999999998 7777887777665443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.61 E-value=9e-15 Score=125.26 Aligned_cols=121 Identities=12% Similarity=0.034 Sum_probs=112.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----------------LLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np----------------eal~~yA~lLy~~~GdyeeAee~~erAL~ld 238 (331)
...++|..+...+++++|+.+|++++...|.++ .++.++|.++. ..+++++|+.+|++|+.++
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhC
Confidence 356889999999999999999999999999988 88999999965 6899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 239 P~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
|+++.++..+|.+++. .|++++|+.+|+++++++|++..++..++.++..+++.++++
T Consensus 119 p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 119 KNNVKALYKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp TTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999999999999999999999998776665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.5e-14 Score=117.71 Aligned_cols=105 Identities=18% Similarity=0.252 Sum_probs=94.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG-------NILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~-------~vL~~l 248 (331)
..|+|+.++++++|++|+.+|++||+++|+++.++.++|.++. ..|++++|+++|++||+++|++. .++..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYF-EEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHH-HhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 4589999999999999999999999999999999999999975 68999999999999999999764 477888
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
|.++.. .+++++|+++|+++++..|+ +.+...+
T Consensus 90 g~~~~~-~~~~~~A~~~~~kal~~~~~-~~~~~~l 122 (127)
T 4gcn_A 90 GNAFQK-QNDLSLAVQWFHRSLSEFRD-PELVKKV 122 (127)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHH-cCCHHHHHHHHHHHHhhCcC-HHHHHHH
Confidence 999998 99999999999999999984 5544433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.7e-15 Score=128.55 Aligned_cols=126 Identities=10% Similarity=0.094 Sum_probs=113.3
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH----HHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI----LSLY 248 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v----L~~l 248 (331)
...+.++|.++...+++++|+.+|+++++.+|+++.++..+|.+++ ..|++++|+++|++++. .|.++.+ +..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~-~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYY-ELAKYDLAQKDIETYFS-KVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHH-HTTCHHHHHHHHHHHHT-TSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HHhhHHHHHHHHHHHHh-ccCchhHHHHHHHHH
Confidence 4456789999999999999999999999999999999999999865 68999999999999999 5555444 8899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.+++. .|++++|+++|+++++++|++..++..+|.++...|++++|...++
T Consensus 81 g~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 132 (272)
T 3u4t_A 81 GKILMK-KGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYME 132 (272)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHG
T ss_pred HHHHHH-cccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999998886
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=5.5e-15 Score=123.56 Aligned_cols=115 Identities=11% Similarity=0.140 Sum_probs=104.7
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHHcCCH--HH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL-IWQAHKDA--SR 261 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l-l~~~~Gd~--de 261 (331)
..+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|+++++++|+++.++..+|.+ ++. .+++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~-~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANPQNSEQWALLGEYYL-WQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQ-ASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCCSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH-TTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh-cCCcchHH
Confidence 4578999999999999999999999999999965 68999999999999999999999999999999 667 8998 99
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|+.+|+++++.+|++..+++.+|.++...|++++|...++
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 139 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQ 139 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9999999999999999999999999999999999998776
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.59 E-value=8e-15 Score=119.59 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=95.5
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 198 KMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 198 kALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
++..+||+.++.+.+.|..++ ..|+|++|+++|++||+++|+++.++..+|.+++. .|++++|+..|++|++++|++.
T Consensus 4 r~a~inP~~a~~~~~~G~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~A~~~~~~al~~~p~~~ 81 (126)
T 4gco_A 4 RLAYINPELAQEEKNKGNEYF-KKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTK-LMEFQRALDDCDTCIRLDSKFI 81 (126)
T ss_dssp ---CCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHCHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHh-hccHHHHHHHHHHHHHhhhhhh
Confidence 445689999999999999976 68999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 278 YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 278 ~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+|+.+|.+|..+|++++|...++
T Consensus 82 ~a~~~lg~~~~~~~~~~~A~~~~~ 105 (126)
T 4gco_A 82 KGYIRKAACLVAMREWSKAQRAYE 105 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999998876
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=2e-14 Score=122.33 Aligned_cols=122 Identities=12% Similarity=0.042 Sum_probs=113.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|..+...+++++|+.+|++++ +| ++.+++++|.++. ..|++++|+++|++|+.++|+++.++..+|.+++.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~- 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ- 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH-
Confidence 5688999999999999999999996 44 7899999999965 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDC----------------YVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna----------------~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.|++++|+.+|++++++.|.+. .+++.+|.++...|++++|...++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 146 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLAL 146 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999999888776 9999999999999999999976653
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=130.25 Aligned_cols=125 Identities=11% Similarity=0.006 Sum_probs=80.4
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|.+|...+++++|+.+|++++..+|+++.++..+|.++. ..|++++|+.+|++++.++|+++.++..+|.++.
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~ 296 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCI 296 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345566666666666666666666666666666666666666643 4566666666666666666666666666666666
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHcCCchHHHhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDD-----------CYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdn-----------a~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
. .|++++|+.+|++++++.|++ ..+|..++.++..+|++++|....
T Consensus 297 ~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 297 N-LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp H-HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHH
T ss_pred H-CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhH
Confidence 6 666666666666666666655 566666666666666666665444
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.9e-14 Score=118.72 Aligned_cols=122 Identities=16% Similarity=0.113 Sum_probs=61.8
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~ 256 (331)
.++|..+...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|.++|++++..+|+++.++..+|.++.. .
T Consensus 12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~ 89 (225)
T 2vq2_A 12 TQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQ-YLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG-R 89 (225)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-h
Confidence 344455555555555555555555555555555555554432 34555555555555555555555555555555554 5
Q ss_pred -CCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 257 -KDASRAESYFDQAVK--SAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 257 -Gd~deAieyferALe--ldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
|++++|+.+|+++++ ..|.+..++..+|.++...|++++|...+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 136 (225)
T 2vq2_A 90 LNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYL 136 (225)
T ss_dssp TCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555555555555555 33444455555555555555555554433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=7.5e-15 Score=142.72 Aligned_cols=125 Identities=12% Similarity=0.041 Sum_probs=117.1
Q ss_pred CCCcccccHHHHHHhCCC-cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHG-SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd-~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
.+.....|+|.+|...++ +++|+.+|+++|+++|+++.+|+++|.++. ..|++++|+.+|++||.++|+++.++..+|
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg 207 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQ 207 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHH
Confidence 466678899999999996 999999999999999999999999999975 679999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-cCCchHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD-AGEDEEEE 297 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k-lG~~eEa~ 297 (331)
+++.. .|++++|+.+|+++|+++|++..+|.++|.+|.. .+..++|.
T Consensus 208 ~~~~~-~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 208 WVIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp HHHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred HHHHH-cCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 99999 9999999999999999999999999999999999 55557774
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-14 Score=119.01 Aligned_cols=127 Identities=13% Similarity=0.061 Sum_probs=115.5
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-GDFAKAEELCGRAIL--ANPSDGNILSLYAD 250 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~-GdyeeAee~~erAL~--ldP~d~~vL~~lA~ 250 (331)
....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. .. |++++|..+|++++. .+|.++.++..+|.
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 121 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGI 121 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHH
Confidence 456788999999999999999999999999999999999998865 68 999999999999999 77777899999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
++.. .|++++|+.+|+++++..|++..++..++.++...|++++|...++.
T Consensus 122 ~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 172 (225)
T 2vq2_A 122 CSAK-QGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKK 172 (225)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999 99999999999999999999999999999999999999999977763
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=4.4e-14 Score=122.68 Aligned_cols=128 Identities=18% Similarity=0.213 Sum_probs=114.9
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL--ANPSDGNILSLYAD 250 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~--ldP~d~~vL~~lA~ 250 (331)
.....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+++|++++. .+|.++.++..+|.
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY-EQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 3457788999999999999999999999999999999999998865 68999999999999999 88889999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+++. .|++++|+.+|+++++..|.+..++..++.++...|++++|...++.
T Consensus 150 ~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 200 (252)
T 2ho1_A 150 VSLQ-MKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDL 200 (252)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9998 99999999999999999999999999999999999999999877763
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.58 E-value=7.9e-14 Score=109.56 Aligned_cols=116 Identities=10% Similarity=-0.005 Sum_probs=104.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~l 248 (331)
...++|..+...+++++|+.+|+++++.+|+++ .+++.+|.+++ ..|++++|..+|++++..+|++ +.++..+
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 82 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYY-ATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKL 82 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHCCCCcccHHHHHHH
Confidence 356789999999999999999999999999998 79999999975 6899999999999999999999 8999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
|.+++. .|++++|+.+|+++++..|++..+......+..-.++
T Consensus 83 a~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~l~~~ 125 (129)
T 2xev_A 83 GLSQYG-EGKNTEAQQTLQQVATQYPGSDAARVAQERLQSIRLG 125 (129)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHC--
T ss_pred HHHHHH-cCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhh
Confidence 999999 9999999999999999999999887777666554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.58 E-value=5.7e-15 Score=120.88 Aligned_cols=107 Identities=7% Similarity=-0.074 Sum_probs=98.4
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 193 ~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
-..|++++..+|++...++.+|.+++ ..|++++|+.+|++++..+|+++.++..+|.++.. .|++++|+.+|++++++
T Consensus 4 ~~~l~~al~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 4 GGTLAMLRGLSEDTLEQLYALGFNQY-QAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQS-LGLYEQALQSYSYGALM 81 (142)
T ss_dssp -----CCTTCCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHcCCHHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhc
Confidence 35788899999999999999999876 68999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 273 APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 273 dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|+++.+++.+|.+|..+|++++|...++
T Consensus 82 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 110 (142)
T 2xcb_A 82 DINEPRFPFHAAECHLQLGDLDGAESGFY 110 (142)
T ss_dssp CTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999998776
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=117.47 Aligned_cols=102 Identities=11% Similarity=-0.048 Sum_probs=90.8
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..+...|++++|+.+|+++++.+|+++.+++.+|.++. ..|++++|+.+|++|++++|+++.++..+|.++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQA-ENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~ 278 (331)
.|++++|+.+|+++++++|++..
T Consensus 98 -~g~~~~A~~~~~~al~~~P~~~~ 120 (121)
T 1hxi_A 98 -EHNANAALASLRAWLLSQPQYEQ 120 (121)
T ss_dssp -HHHHHHHHHHHHHHHC-------
T ss_pred -cCCHHHHHHHHHHHHHhCcCCCC
Confidence 99999999999999999997653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-14 Score=133.19 Aligned_cols=128 Identities=19% Similarity=0.178 Sum_probs=97.5
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....|+|..|...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|+++++++|+++.++..++.+
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence 34456677777777777777777777777777777777777777754 56777777777777777777777777777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. .|++++|+.+|+++++++|++..++..++.+|...|++++|...++
T Consensus 315 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 363 (388)
T 1w3b_A 315 KRE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HHT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 777 7777777777777777777777777777777777777777777665
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.58 E-value=3.8e-14 Score=123.05 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=120.6
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|.++|++++..+|.++.++..+|.++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQ-TEMEPKLADEEYRKALASDSRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999965 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 253 WQAHKDASRAESYFDQAVK--SAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 253 ~~~~Gd~deAieyferALe--ldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+. .|++++|+++|+++++ ..|.+..++..+|.++...|++++|...+++
T Consensus 116 ~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 166 (252)
T 2ho1_A 116 YE-QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEK 166 (252)
T ss_dssp HH-TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HH-HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99 9999999999999999 8899999999999999999999999987763
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.5e-14 Score=112.90 Aligned_cols=116 Identities=16% Similarity=0.054 Sum_probs=107.5
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSL 247 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~ 247 (331)
.+.....++|..+...+++++|+.+|+++++.+|++ ..++.++|.++. ..+++++|+.+|++++.++|+++.++..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 104 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHL-KLEDYDKAETEASKAIEKDGGDVKALYR 104 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHH-HHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence 355567889999999999999999999999999998 889999999865 6899999999999999999999999999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
+|.+++. .+++++|+.+|+++++++|++..++..++.+..
T Consensus 105 ~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 105 RSQALEK-LGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHH-HTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred HHHHHHH-cCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence 9999999 999999999999999999999999988887754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-14 Score=141.71 Aligned_cols=129 Identities=12% Similarity=0.065 Sum_probs=122.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|..|...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|.++|++|++++|+++.++..+|.+
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~ 100 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHA 100 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 45568899999999999999999999999999999999999999965 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCchHHHhhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA---GEDEEEEQDNEE 302 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl---G~~eEa~~~~e~ 302 (331)
++. .|++++|+++|+++++++|++..++..++.++..+ |++++|...+++
T Consensus 101 ~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 101 LED-AGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 999 99999999999999999999999999999999999 999999977763
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.57 E-value=7.2e-14 Score=124.29 Aligned_cols=128 Identities=15% Similarity=0.057 Sum_probs=119.0
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|..+|+++++.+|+++.++..+|.+
T Consensus 171 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~ 249 (327)
T 3cv0_A 171 DAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLA-NGNRPQEALDAYNRALDINPGYVRVMYNMAVS 249 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 45667889999999999999999999999999999999999999875 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPD------------DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPd------------na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.. .|++++|+.+|+++++..|+ +..++..++.++...|++++|....+
T Consensus 250 ~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 250 YSN-MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHH-hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999 99999999999999999998 78999999999999999999987765
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.8e-14 Score=122.69 Aligned_cols=129 Identities=14% Similarity=0.124 Sum_probs=116.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAIL-------- 236 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n-------peal~~yA~lLy~~~GdyeeAee~~erAL~-------- 236 (331)
+.....++|.+|...+++++|+.+|+++++.+|++ +.++..+|.++. ..+++++|.++|++++.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 115 (258)
T 3uq3_A 37 DITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRTADIL 115 (258)
T ss_dssp CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCHHHH
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCchhHHH
Confidence 34567789999999999999999999999999887 788899998865 68999999999999999
Q ss_pred ------------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 237 ------------------ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 237 ------------------ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
.+|.++.++..+|.+++. .|++++|+.+|+++++.+|++..++..+|.++...|++++|..
T Consensus 116 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 116 TKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFT-KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHH
Confidence 777788899999999999 9999999999999999999999999999999999999999998
Q ss_pred hhhh
Q 020109 299 DNEE 302 (331)
Q Consensus 299 ~~e~ 302 (331)
.++.
T Consensus 195 ~~~~ 198 (258)
T 3uq3_A 195 DCNK 198 (258)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.3e-14 Score=125.31 Aligned_cols=131 Identities=15% Similarity=0.037 Sum_probs=122.1
Q ss_pred CCcccccHHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~g-d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+.....++|.++...+ ++++|+.+|+++++.+|.++.++..+|.++. ..|++++|.++|++++..+|++..++..+|.
T Consensus 89 ~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~ 167 (330)
T 3hym_B 89 NPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESEHDQAMAAYFTAAQLMKGCHLPMLYIGL 167 (330)
T ss_dssp STHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3456788999999999 9999999999999999999999999999975 6899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
+++. .|++++|+.+|+++++.+|++..++..+|.++...|++++|...+++..
T Consensus 168 ~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 168 EYGL-TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHH-TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHH-HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999998776443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=7.2e-14 Score=129.87 Aligned_cols=127 Identities=19% Similarity=0.168 Sum_probs=106.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.++...+++++|+.+|++++..+|+++.++.++|.++. ..|++++|+++|++++.++|+++.++..+|.++
T Consensus 203 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 281 (388)
T 1w3b_A 203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-EQGLIDLAIDTYRRAIELQPHFPDAYCNLANAL 281 (388)
T ss_dssp HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 3456677888888888888888888888888888888888888765 678888888888888888888888888888888
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+++|++++++.|++..++..++.++...|++++|...++
T Consensus 282 ~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 329 (388)
T 1w3b_A 282 KE-KGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYR 329 (388)
T ss_dssp HH-HSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88 8888888888888888888888888888888888888888887776
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.56 E-value=1.9e-14 Score=141.62 Aligned_cols=123 Identities=13% Similarity=0.090 Sum_probs=112.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---------------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
...++|..|++.++|++|+.+|++||+++|.+ ..+++++|.++. ..++|++|+.+|++||.++|
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p 348 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDS 348 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCC
Confidence 35688999999999999999999999999998 689999999965 78999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhh
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQD 299 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~ 299 (331)
+++.+++.+|.+++. .+++++|+.+|++|++++|++..++..++.++..++++++++..
T Consensus 349 ~~~~a~~~~g~a~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 349 ANEKGLYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 99999999999999999999999999999999999999888753
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=7.4e-14 Score=128.41 Aligned_cols=126 Identities=17% Similarity=0.116 Sum_probs=77.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--------------
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP-------------- 239 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP-------------- 239 (331)
....++|.+|...+++++|+.+|+++++++|+++.++..+|.++. ..|++++|+++|++++.++|
T Consensus 100 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~ 178 (365)
T 4eqf_A 100 EAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPG 178 (365)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCHHHHCC---------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchH
Confidence 345566666666666666666666666666666666666665543 44555555554444444333
Q ss_pred ------------------------------C--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 240 ------------------------------S--DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 240 ------------------------------~--d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
+ ++.++..+|.++.. .|++++|+.+|++++++.|+++.++..+|.++
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 257 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL-SGEFNRAIDAFNAALTVRPEDYSLWNRLGATL 257 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3 55666666666666 66666666666666666666666666666666
Q ss_pred HHcCCchHHHhhhh
Q 020109 288 WDAGEDEEEEQDNE 301 (331)
Q Consensus 288 ~klG~~eEa~~~~e 301 (331)
...|++++|...++
T Consensus 258 ~~~g~~~~A~~~~~ 271 (365)
T 4eqf_A 258 ANGDRSEEAVEAYT 271 (365)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 66666666665554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=149.96 Aligned_cols=128 Identities=8% Similarity=-0.048 Sum_probs=122.8
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.+.....++|..|...|++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+++|++|++++|+++.++..+|.
T Consensus 431 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~ 509 (681)
T 2pzi_A 431 ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAEL-LTGDYDSATKHFTEVLDTFPGELAPKLALAA 509 (681)
T ss_dssp TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCSHHHHHHHH
T ss_pred cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 456678899999999999999999999999999999999999999976 6899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.. .|++++ +++|++|++++|++..+++++|.+|..+|++++|...++
T Consensus 510 ~~~~-~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 510 TAEL-AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp HHHH-HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH-cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999 999999 999999999999999999999999999999999998887
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=143.30 Aligned_cols=126 Identities=12% Similarity=0.009 Sum_probs=79.2
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCCCHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR---------GDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~---------GdyeeAee~~erAL~ldP~d~~ 243 (331)
.....++|.+|...+++++|+.+|+++++++|+ +.++.++|.++. .. |++++|+++|++|++++|+++.
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 214 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR 214 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH
Confidence 344556666666666666666666666666665 455666665543 34 5666666666666666666666
Q ss_pred HHHHHHHHHHHHc--------CCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 244 ILSLYADLIWQAH--------KDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 244 vL~~lA~ll~~~~--------Gd~deAieyferALeldP---dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++..+|.+++. . +++++|+.+|++|++++| +++.+|+.+|.+|+..|++++|...++
T Consensus 215 ~~~~lg~~~~~-~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 282 (474)
T 4abn_A 215 SWYILGNAYLS-LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFS 282 (474)
T ss_dssp HHHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 66666666666 5 666666666666666666 666666666666666666666665444
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=120.26 Aligned_cols=126 Identities=8% Similarity=0.025 Sum_probs=114.5
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|..+|++++.++|+++.++..+|.++
T Consensus 43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~ 121 (275)
T 1xnf_A 43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL 121 (275)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCccccHHHHHHHHHH
Confidence 4457789999999999999999999999999999999999999965 689999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+. .|++++|+.+|+++++++|++...+..++.+ ...|++++|...++
T Consensus 122 ~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~ 168 (275)
T 1xnf_A 122 YY-GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLK 168 (275)
T ss_dssp HH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHH
T ss_pred HH-hccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHH
Confidence 99 9999999999999999999998776666654 56689999987775
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-14 Score=107.82 Aligned_cols=114 Identities=18% Similarity=0.222 Sum_probs=105.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-------GNILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d-------~~vL~~l 248 (331)
..++|..+...+++++|+.+|++++..+|.++.++..+|.++. ..+++++|..+|++++..+|++ +.++..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999975 6899999999999999999988 9999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
|.+++. .|++++|+.+|+++++..| +..++..++.++..+++
T Consensus 86 a~~~~~-~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 86 GNSYFK-EEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-hccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence 999999 9999999999999999999 68888888888776544
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=142.33 Aligned_cols=127 Identities=9% Similarity=-0.021 Sum_probs=121.1
Q ss_pred CCcccccHHHHHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~-ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+.....++|..|...+++ ++|+.+|+++++++|+++.++..+|.+++ ..|++++|+++|++|++++|+ +.++..+|.
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYW-KKGDVTSAHTCFSGALTHCKN-KVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCC-HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCC-HHHHHHHHH
Confidence 566789999999999999 99999999999999999999999999976 689999999999999999999 799999999
Q ss_pred HHHHHc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------CCchHHHhhhh
Q 020109 251 LIWQAH---------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA--------GEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~---------Gd~deAieyferALeldPdna~vl~~lA~~L~kl--------G~~eEa~~~~e 301 (331)
+++. . |++++|+.+|++|++++|++..+|+.+|.+|... |++++|...++
T Consensus 179 ~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~ 245 (474)
T 4abn_A 179 VLRQ-LQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYA 245 (474)
T ss_dssp HHTT-CCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHH-hccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHH
Confidence 9999 9 9999999999999999999999999999999999 99999998776
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=123.30 Aligned_cols=126 Identities=12% Similarity=0.057 Sum_probs=96.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------CCCHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN---------PSDGNI 244 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld---------P~d~~v 244 (331)
....++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+.+|++++.+. |.++.+
T Consensus 160 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 238 (330)
T 3hym_B 160 LPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAF-QNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPL 238 (330)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcccHHHHHHHHHHHHHHhhhccccccccHHHHH
Confidence 345567777777777777777777777777777777777777754 5677777777777777776 666777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+..+|.++.. .|++++|+.+|+++++++|++..++..+|.++...|++++|...++
T Consensus 239 ~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 294 (330)
T 3hym_B 239 LNNLGHVCRK-LKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFH 294 (330)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7777777777 7888888888888888888777788888888888888877777666
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-13 Score=103.99 Aligned_cols=103 Identities=12% Similarity=0.014 Sum_probs=92.6
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--DGNILSLYA 249 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d~~vL~~lA 249 (331)
+.....++|..+...+++++|+.+|+++++.+|.++.++.++|.++. ..+++++|.++|+++++.+|+ ++.++..+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALY-NLERYEEAVDCYNYVINVIEDEYNKDVWAAKA 83 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence 45567889999999999999999999999999999999999998865 689999999999999999999 999999999
Q ss_pred HHHHHHc-CCHHHHHHHHHHHHHhCCCC
Q 020109 250 DLIWQAH-KDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 250 ~ll~~~~-Gd~deAieyferALeldPdn 276 (331)
.++.. . |++++|+++|+++++..|.+
T Consensus 84 ~~~~~-~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 84 DALRY-IEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHHTT-CSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHH-HhCCHHHHHHHHHHHhhcccCC
Confidence 99998 9 99999999999999998865
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.54 E-value=8.6e-14 Score=122.22 Aligned_cols=127 Identities=9% Similarity=-0.023 Sum_probs=111.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHH-----------------cCCHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL---LLGNYARFLKEV-----------------RGDFAKAEELCGRA 234 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe---al~~yA~lLy~~-----------------~GdyeeAee~~erA 234 (331)
...++|.+|...+++++|+.+|+++++.+|+++. +++.+|.+++.. .+++++|..+|+++
T Consensus 43 a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 122 (225)
T 2yhc_A 43 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKL 122 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHH
Confidence 5678899999999999999999999999999875 677788776532 46899999999999
Q ss_pred HHhCCCCHHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcCCch
Q 020109 235 ILANPSDGNIL-----------------SLYADLIWQAHKDASRAESYFDQAVKSAPDDC---YVLASYAKFLWDAGEDE 294 (331)
Q Consensus 235 L~ldP~d~~vL-----------------~~lA~ll~~~~Gd~deAieyferALeldPdna---~vl~~lA~~L~klG~~e 294 (331)
++.+|+++.+. ..+|.+++. .|++++|+..|+++++..|+++ .+++.++.++.++|+++
T Consensus 123 l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~ 201 (225)
T 2yhc_A 123 VRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTE-RGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNA 201 (225)
T ss_dssp HTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcH
Confidence 99999998665 467888898 9999999999999999999886 67999999999999999
Q ss_pred HHHhhhhh
Q 020109 295 EEEQDNEE 302 (331)
Q Consensus 295 Ea~~~~e~ 302 (331)
+|...++.
T Consensus 202 ~A~~~~~~ 209 (225)
T 2yhc_A 202 QAEKVAKI 209 (225)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99976663
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-13 Score=125.71 Aligned_cols=124 Identities=10% Similarity=0.107 Sum_probs=116.1
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
.+++.++ ..+++++|+.+|+++++.+|. ++.++..+|.++. ..|++++|+.+|++++.++|+++.++..+|.++..
T Consensus 186 ~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~ 263 (368)
T 1fch_A 186 RILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN 263 (368)
T ss_dssp CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence 3666777 889999999999999999999 8999999999965 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
.|++++|+.+|+++++++|++..++..+|.++...|++++|...++..
T Consensus 264 -~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 264 -GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999877643
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.53 E-value=3.9e-14 Score=136.47 Aligned_cols=123 Identities=18% Similarity=0.116 Sum_probs=115.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIE----------------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALe----------------ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
+.++|..|.+.+++++|+.+|++||+ .+|.++.++.++|.+++ ..+++++|+++|++|++++|
T Consensus 226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~p 304 (370)
T 1ihg_A 226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDP 304 (370)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHhCc
Confidence 56789999999999999999999999 78888999999999975 78999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
+++.++..+|.+++. .+++++|+.+|++|++++|++..++..++.++..+++++++.+..
T Consensus 305 ~~~~a~~~lg~~~~~-~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~ 364 (370)
T 1ihg_A 305 SNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAA 364 (370)
T ss_dssp TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999999999988887543
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-14 Score=122.09 Aligned_cols=124 Identities=12% Similarity=0.115 Sum_probs=111.7
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|.+|...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|+++|++++.++|+++.++..+|..++.
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~- 154 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY- 154 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH-
Confidence 5789999999999999999999999999999999999999965 68999999999999999999999999999955555
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC---chHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE---DEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~---~eEa~~~~e 301 (331)
.+++++|+.+|+++++++|++..++..++.++...++ +++|...++
T Consensus 155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 203 (272)
T 3u4t_A 155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203 (272)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHH
Confidence 6799999999999999999999999999999999998 766765554
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=122.50 Aligned_cols=126 Identities=12% Similarity=0.033 Sum_probs=118.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..+...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|++++.++|+++.++..+|.+++.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 83 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLK 83 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCC---CCHHHHHHH------------HHHHHHcCCchHHHhhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAP---DDCYVLASY------------AKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 255 ~~Gd~deAieyferALeldP---dna~vl~~l------------A~~L~klG~~eEa~~~~e~ 302 (331)
.|++++|+.+|+++++.+| ++..++..+ +.++...|++++|...++.
T Consensus 84 -~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 145 (359)
T 3ieg_A 84 -QGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDK 145 (359)
T ss_dssp -HTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -cCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999999999999 999998887 7999999999999987763
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.5e-14 Score=119.95 Aligned_cols=124 Identities=17% Similarity=0.062 Sum_probs=85.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..+.|..+...|++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|++++..+| ++.++..++.+.+..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLL-ETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHH-HTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHh
Confidence 3456777777777777777777777777777777777777754 56777777777777777777 666655555443321
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+..+|+..|+++++++|+++.+++.+|.++...|++++|...++
T Consensus 87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~ 132 (176)
T 2r5s_A 87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLW 132 (176)
T ss_dssp HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 2333456777777777777777777777777777777777776655
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.8e-14 Score=143.09 Aligned_cols=125 Identities=18% Similarity=0.081 Sum_probs=113.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|..|..++++++|+.+|++|++++|+++.++.++|.++. ..+++++|+++|++|++++|+++.++..+|.++..
T Consensus 8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 86 (477)
T ss_dssp TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35677788889999999999999999999999999999999975 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--HHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKF--LWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~--L~klG~~eEa~~~~e 301 (331)
.|++++|+++|++|++++|++..++..++.+ +.+.+++++|....+
T Consensus 87 -~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 -LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp -HTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999988 888899999987665
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-14 Score=113.58 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=91.9
Q ss_pred CCCcHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 186 NHGSSSTDAYYEKMIEA---NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 186 ~gd~ekA~e~yekALel---dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
.|++++|+.+|+++|+. +|+++.++.++|.++. ..|++++|+.+|++|++++|+++.++..+|.+++. .|++++|
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A 80 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFR-TLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYN-LGRYEQG 80 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH-cCCHHHH
Confidence 47899999999999999 6999999999999975 68999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
+.+|+++++..|++..+......+....+..
T Consensus 81 ~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 81 VELLLKIIAETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 9999999999999998766555555444443
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3.2e-14 Score=120.13 Aligned_cols=129 Identities=9% Similarity=-0.025 Sum_probs=113.1
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.+.....++|.+|...|++++|+.+|++++..+| ++.++..++.+......+..+|+.+|++++.++|+++.++..+|.
T Consensus 38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~ 116 (176)
T 2r5s_A 38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAV 116 (176)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 3455678999999999999999999999999999 988777666553323334456899999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDD--CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdn--a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.. .|++++|+.+|+++++.+|+. ..++..++.++..+|+.++|...++
T Consensus 117 ~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 117 QYNQ-VGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp HHHH-TTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred HHHH-cccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 9999 999999999999999999975 6699999999999999999987775
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=114.52 Aligned_cols=109 Identities=14% Similarity=0.097 Sum_probs=100.8
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDF--AKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gdy--eeAee~~erAL~ldP~d~~vL~~lA 249 (331)
+.....++|.+|...+++++|+.+|+++++.+|+++.++..+|.+++...+++ ++|+.+|++++.++|+++.++..+|
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la 122 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLA 122 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 44567889999999999999999999999999999999999999955578998 9999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
.+++. .|++++|+.+|+++++++|++.....
T Consensus 123 ~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~ 153 (177)
T 2e2e_A 123 SDAFM-QANYAQAIELWQKVMDLNSPRINRTQ 153 (177)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred HHHHH-cccHHHHHHHHHHHHhhCCCCccHHH
Confidence 99999 99999999999999999998865543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=121.12 Aligned_cols=131 Identities=14% Similarity=-0.006 Sum_probs=117.5
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNI 244 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~v 244 (331)
.+...+++.|..+...+++++|+.+|+++++.+|++ +.+++.+|.+++ ..|++++|+.+|++++.++|++ +.+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYY-QNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 355668899999999999999999999999999999 899999999976 6899999999999999998855 667
Q ss_pred HHHHHHHHHHH-------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCchHHHhhh
Q 020109 245 LSLYADLIWQA-------HKDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 245 L~~lA~ll~~~-------~Gd~deAieyferALeldPdna~vl-----------------~~lA~~L~klG~~eEa~~~~ 300 (331)
+..+|.+++.. .|++++|+.+|+++++..|++..+. +.+|.+|...|++++|+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 171 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTY 171 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHH
Confidence 88899987642 6999999999999999999987766 88899999999999999888
Q ss_pred hh
Q 020109 301 EE 302 (331)
Q Consensus 301 e~ 302 (331)
+.
T Consensus 172 ~~ 173 (261)
T 3qky_A 172 EA 173 (261)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.1e-13 Score=121.05 Aligned_cols=127 Identities=15% Similarity=0.055 Sum_probs=99.0
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CCHHHHHHH-
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP---SDGNILSLY- 248 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP---~d~~vL~~l- 248 (331)
.....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|..+|++++.++| +++.++..+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~ 115 (359)
T 3ieg_A 37 YIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV 115 (359)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence 3456677888888888888888888888888888888888887764 56888888888888888888 777777666
Q ss_pred -----------HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 -----------ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 -----------A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.+++. .|++++|+++|+++++..|++..++..++.++...|++++|...++
T Consensus 116 ~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 178 (359)
T 3ieg_A 116 KADEMQRLRSQALDAFD-GADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLK 178 (359)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 566777 7888888888888888888777777788888888888777776665
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.50 E-value=5.1e-13 Score=123.54 Aligned_cols=125 Identities=10% Similarity=-0.062 Sum_probs=111.2
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL-KEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lL-y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+.....+++..|...|++++|+.+|+++++.+|++.......+.+. +...+++++|..+|++++..+|+++.++..+|.
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~ 208 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAA 208 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 5567889999999999999999999999999999875544333221 123489999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++.. .|++++|+.+|+++++++|+++.++.+++.+++..|+.+++.
T Consensus 209 ~~~~-~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa 254 (291)
T 3mkr_A 209 CHMA-QGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVT 254 (291)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHH
Confidence 9999 999999999999999999999999999999999999998754
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=120.62 Aligned_cols=124 Identities=10% Similarity=0.093 Sum_probs=105.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
+..++|.+|...|++++|+.+|+++|+++|+++.++.++|.++. ..|++++|+.+|+++++++|+++.++..+|.+++.
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~ 134 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQV-CRGQEKDALRMYEKILQLEADNLAANIFLGNYYYL 134 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 34569999999999999999999999999999999999999975 68999999999999999999999999999999876
Q ss_pred HcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~G--d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+ +.++++..|.+++...| ...+++.+|.++...+++++|+..++
T Consensus 135 -~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g~~~~~~~~~~~A~~~~~ 181 (208)
T 3urz_A 135 -TAEQEKKKLETDYKKLSSPTK-MQYARYRDGLSKLFTTRYEKARNSLQ 181 (208)
T ss_dssp -HHHHHHHHHHHHHC---CCCH-HHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred -HhHHHHHHHHHHHHHHhCCCc-hhHHHHHHHHHHHHccCHHHHHHHHH
Confidence 54 45667788888765433 34567888999999999999998776
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=121.82 Aligned_cols=127 Identities=14% Similarity=-0.041 Sum_probs=114.1
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHhCCCC
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEV--------RGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~--------~GdyeeAee~~erAL~ldP~d 241 (331)
.....++|.+|...+++++|+.+|++++..+|++ +.+++.+|.+++ . .|++++|+.+|++++..+|++
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 3457889999999999999999999999998865 567888998865 5 799999999999999999999
Q ss_pred HHHH-----------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHc----------C
Q 020109 242 GNIL-----------------SLYADLIWQAHKDASRAESYFDQAVKSAPD---DCYVLASYAKFLWDA----------G 291 (331)
Q Consensus 242 ~~vL-----------------~~lA~ll~~~~Gd~deAieyferALeldPd---na~vl~~lA~~L~kl----------G 291 (331)
+.+. ..+|.+++. .|++++|+.+|+++++..|+ ...+++.+|.+|..+ |
T Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 131 ELVDDATQKIRELRAKLARKQYEAARLYER-RELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 8777 778999999 99999999999999999998 567999999999987 8
Q ss_pred CchHHHhhhh
Q 020109 292 EDEEEEQDNE 301 (331)
Q Consensus 292 ~~eEa~~~~e 301 (331)
++++|...++
T Consensus 210 ~~~~A~~~~~ 219 (261)
T 3qky_A 210 RYRRAVELYE 219 (261)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 8899998776
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=1.3e-13 Score=120.28 Aligned_cols=117 Identities=17% Similarity=0.123 Sum_probs=108.4
Q ss_pred hCCCcHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH
Q 020109 185 NNHGSSSTDAYYEKMIEA----NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDAS 260 (331)
Q Consensus 185 ~~gd~ekA~e~yekALel----dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~d 260 (331)
..+++++|+.+|+++++. +|.++.++..+|.++. ..|++++|..+|++++.++|+++.++..+|.+++. .|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHH-HcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-ccCHH
Confidence 457899999999999998 4567888999999975 68999999999999999999999999999999999 99999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 261 RAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 261 eAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+|+.+|+++++++|++..++..+|.++...|++++|...++..
T Consensus 95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.6e-13 Score=119.75 Aligned_cols=118 Identities=13% Similarity=0.158 Sum_probs=111.9
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
+...+++++|+.+|+++++.+|.++.++..+|.++. ..|++++|.+++++++..+|+++.++..+|.+++. .|++++|
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A 225 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYN-LSNNYDSAAANLRRAVELRPDDAQLWNKLGATLAN-GNRPQEA 225 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHH
Confidence 556688999999999999999999999999999975 68999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+.+|+++++..|++..++..++.++...|++++|...+++
T Consensus 226 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 265 (327)
T 3cv0_A 226 LDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVR 265 (327)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999999999999999999987763
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.7e-13 Score=102.19 Aligned_cols=98 Identities=15% Similarity=0.159 Sum_probs=93.4
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Q 020109 202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD--DCYV 279 (331)
Q Consensus 202 ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd--na~v 279 (331)
++|+++.++..+|.++. ..+++++|..+|+++++++|.++.++..+|.+++. .+++++|+.+|+++++.+|+ +..+
T Consensus 1 l~p~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~ 78 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQY-DAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYN-LERYEEAVDCYNYVINVIEDEYNKDV 78 (112)
T ss_dssp CCCSSTTGGGGHHHHHH-SSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTSCCTTCHHH
T ss_pred CCCCcHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCcccchHHH
Confidence 37889999999999965 68999999999999999999999999999999999 99999999999999999999 9999
Q ss_pred HHHHHHHHHHc-CCchHHHhhhh
Q 020109 280 LASYAKFLWDA-GEDEEEEQDNE 301 (331)
Q Consensus 280 l~~lA~~L~kl-G~~eEa~~~~e 301 (331)
+..++.++..+ |++++|...++
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~ 101 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEA 101 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999 99999998887
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.4e-13 Score=105.64 Aligned_cols=97 Identities=13% Similarity=0.007 Sum_probs=90.6
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 204 P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
|.++..+..+|..++ ..|++++|+.+|++|+.++|+++.++..+|.+++. .|++++|+.+|+++++++|++..+++.+
T Consensus 1 p~~a~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (126)
T 3upv_A 1 SMKAEEARLEGKEYF-TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAK-LMSFPEAIADCNKAIEKDPNFVRAYIRK 78 (126)
T ss_dssp CHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CchHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence 445678888998876 68999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHhhhhh
Q 020109 284 AKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 284 A~~L~klG~~eEa~~~~e~ 302 (331)
|.++..+|++++|...++.
T Consensus 79 g~~~~~~~~~~~A~~~~~~ 97 (126)
T 3upv_A 79 ATAQIAVKEYASALETLDA 97 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHH
Confidence 9999999999999987763
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.9e-13 Score=125.56 Aligned_cols=127 Identities=12% Similarity=0.004 Sum_probs=88.5
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|..+...|++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+.+|++++..+|+........+..+
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l 195 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLI-ALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIEL 195 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH-HTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHH-HCCCHHHHHHHHHhCchhhcchHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999864 689998887777776655554443333344434
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .++.++|+..|+++++.+|++..+++.+|.+|...|++++|...++
T Consensus 196 ~~-~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~ 243 (287)
T 3qou_A 196 LX-QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLF 243 (287)
T ss_dssp HH-HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred Hh-hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 44 4555555555555555555555555555555555555555554443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.48 E-value=5.3e-13 Score=127.80 Aligned_cols=127 Identities=16% Similarity=0.152 Sum_probs=115.8
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|++++.++|+++.++..+|.+++
T Consensus 277 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 355 (537)
T 3fp2_A 277 NSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF-ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLY 355 (537)
T ss_dssp HHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 346678888999999999999999999999999999999998865 6899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
. .|++++|+.+|+++++.+|++..++..+|.++...|++++|...+++
T Consensus 356 ~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 403 (537)
T 3fp2_A 356 K-QGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDI 403 (537)
T ss_dssp H-TTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred H-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9 99999999999999999999999999999999999999999977764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1e-12 Score=123.21 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=105.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNY------------ARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~y------------A~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
+.....++|.+|...+++++|+.+|++++..+|+++.++..+ |.++. ..|++++|..+|++++.++|
T Consensus 210 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~A~~~~~~~l~~~p 288 (450)
T 2y4t_A 210 NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI-RDGRYTDATSKYESVMKTEP 288 (450)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCC
Confidence 345677888888888888888888888888888888877666 66654 56888888888888888888
Q ss_pred CCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 240 SDGN----ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 240 ~d~~----vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++. ++..+|.++.. .|++++|+.+|+++++++|++..+|..+|.++...|++++|...++
T Consensus 289 ~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~ 353 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSK-DEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYE 353 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8854 66778888888 8999999999999999999888999999999999999988887776
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-13 Score=123.39 Aligned_cols=129 Identities=14% Similarity=0.140 Sum_probs=107.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe-al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+..+..++|.++...+++++|..+|+++|+++|.++. +|.+|+.++. ..|++++|..+|++|++.+|.+..++..++.
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~ 176 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAAL 176 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 3456778999999999999999999999999999987 8999998864 5688888888888888888888777776666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.+...|++++|+.+|+++++.+|+++.+|..++.++...|++++|...++
T Consensus 177 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~ 227 (308)
T 2ond_A 177 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 654325888888888888888888888888888888888888888887766
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=3.5e-13 Score=133.86 Aligned_cols=113 Identities=16% Similarity=0.161 Sum_probs=91.7
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYF 266 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyf 266 (331)
+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+++|++|++++|+++.++..+|.+++. .|++++|+++|
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAEL-GMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWT-QQRHAEAAVLL 80 (568)
T ss_dssp ------------------CCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-CCCHHHHHHHH
Confidence 68899999999999999999999999999975 68999999999999999999999999999999999 99999999999
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 267 DQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 267 erALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++++++|++..+++.+|.+|...|++++|...++
T Consensus 81 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 115 (568)
T 2vsy_A 81 QQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYT 115 (568)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999999999999999999997776
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-12 Score=122.49 Aligned_cols=129 Identities=12% Similarity=0.036 Sum_probs=118.5
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+......+|..|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|+.+|+++++++|+++.++..+|.+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFL-AMGKSKAALPDLTKVIQLKMDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 44557789999999999999999999999999999999999999975 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHH------------HHHHHHcCCchHHHhhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDC---YVLASY------------AKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna---~vl~~l------------A~~L~klG~~eEa~~~~e~ 302 (331)
+.. .|++++|+.+|+++++++|++. .++..+ |.++...|++++|...++.
T Consensus 104 ~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~ 168 (450)
T 2y4t_A 104 LLK-QGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDK 168 (450)
T ss_dssp HHH-TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHH-cCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999 9999999999999999999988 776655 6669999999999987764
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.2e-13 Score=119.22 Aligned_cols=111 Identities=13% Similarity=0.033 Sum_probs=99.2
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-------NAL-----LLGNYARFLKEVRGDFAKAEELCGRAILA------ 237 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~-------npe-----al~~yA~lLy~~~GdyeeAee~~erAL~l------ 237 (331)
+.|.|..+++.|+|++|+.+|++||+++|+ +.. +|.++|.++. ..|+|++|+.+|++||++
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~-~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhhhcccc
Confidence 467899999999999999999999999999 443 8999999875 689999999999999999
Q ss_pred -CCCCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 238 -NPSDGNIL----SLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 238 -dP~d~~vL----~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
+|+++.+| +..|.++.. .|++++|+..|++|++++|++..+.-.+..+..
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~-lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~ 147 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEERKGETPGKERMME 147 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHH
T ss_pred CCCchHHHHHHHHHhHHHHHHH-CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99999999 999999999 999999999999999999988766555544433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.7e-12 Score=102.83 Aligned_cols=100 Identities=15% Similarity=0.064 Sum_probs=92.7
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020109 201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 201 eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl 280 (331)
..+|.++..+..+|.+++ ..+++++|+.+|++++.++|+++.++..+|.+++. .+++++|+.+|+++++++|++..++
T Consensus 3 ~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~ 80 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAH 80 (137)
T ss_dssp ---CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHH-HhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCchhHHHH
Confidence 457889999999999976 68999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHhhhhh
Q 020109 281 ASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 281 ~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+.+|.++...|++++|...++.
T Consensus 81 ~~l~~~~~~~~~~~~A~~~~~~ 102 (137)
T 3q49_B 81 FFLGQCQLEMESYDEAIANLQR 102 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999977763
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-12 Score=127.02 Aligned_cols=129 Identities=11% Similarity=0.019 Sum_probs=112.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....+++..|.+.|++++|+.+|+++++.+|.+..++..++.++. ..|++++|+++|++++..+|+++.++..++.++
T Consensus 373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 4456778888899999999999999999999999988888888865 579999999999999999999999999999998
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
.+ .|++++|+++|+++++..|+++.++..++.+|.+.|++++|...+++.
T Consensus 452 ~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 452 MQ-LGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HH-HTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88 899999999999999999999999999999999999999998777644
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-13 Score=117.88 Aligned_cols=128 Identities=20% Similarity=0.244 Sum_probs=115.2
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-------- 237 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALel--------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l-------- 237 (331)
....++|.+|...+++++|+.+|+++++. +|....++.++|.++. ..|++++|+++|++|+.+
T Consensus 44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 35778999999999999999999999988 4666778889998865 689999999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 238 NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS--------APDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 238 dP~d~~vL~~lA~ll~~~~Gd~deAieyferALel--------dPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+|....++..+|.+++. .|++++|+.+|++++++ .|....++..+|.++...|++++|...+++.
T Consensus 123 ~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQN-QGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp CHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 57788899999999999 99999999999999999 7788899999999999999999999766543
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.3e-12 Score=127.38 Aligned_cols=125 Identities=12% Similarity=-0.032 Sum_probs=63.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCC-HHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSD-GNILSL 247 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l------dP~d-~~vL~~ 247 (331)
...+++..|...|++++|+.+|+++++.+|.++.++..++.++. ..|++++|+++|++++.+ +|++ ..++..
T Consensus 443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~ 521 (597)
T 2xpi_A 443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF-NKSDMQTAINHFQNALLLVKKTQSNEKPWAATWAN 521 (597)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHH
Confidence 34444445555555555555555555555555555555554433 345555555555555544 3332 444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 248 YADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 248 lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.+++. .|++++|+++|+++++++|++..++..++.+|...|++++|...++
T Consensus 522 l~~~~~~-~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 574 (597)
T 2xpi_A 522 LGHAYRK-LKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLH 574 (597)
T ss_dssp HHHHHHH-TTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHH-hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 5555555 5555555555555555555555555555555555555555554443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.4e-13 Score=122.06 Aligned_cols=126 Identities=14% Similarity=0.021 Sum_probs=112.0
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC-----
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVR-GDFAKAEELCGRAILANPSD----- 241 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~-GdyeeAee~~erAL~ldP~d----- 241 (331)
....|+|.+|...|++++|+.+|++||++.|.. ..++.++|.++. .. |++++|+++|++|+.+.|.+
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~~lg~~~~A~~~~~~Al~~~~~~~~~~~ 156 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILE-NDLHDYAKAIDCYELAGEWYAQDQSVAL 156 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence 357799999999999999999999999998754 457888998864 65 99999999999999998865
Q ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 -GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY-------VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 -~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~-------vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..++..+|.++.. .|++++|+.+|++++++.|++.. ++..+|.++..+|++++|...++
T Consensus 157 ~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 223 (292)
T 1qqe_A 157 SNKCFIKCADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (292)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5678899999999 99999999999999999997653 67899999999999999998887
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-12 Score=109.15 Aligned_cols=97 Identities=15% Similarity=0.102 Sum_probs=90.9
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
++.++..+..+|.+++ ..+++++|+++|++|+.++|+++.++..+|.+++. .|++++|+.+|+++++++|++..+|+.
T Consensus 7 ~~~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~ 84 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAM-ARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSA-SGQHEKAAEDAELATVVDPKYSKAWSR 84 (164)
T ss_dssp CCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred hhhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 4556788899998876 68999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHhhhh
Q 020109 283 YAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 283 lA~~L~klG~~eEa~~~~e 301 (331)
+|.+|..+|++++|...++
T Consensus 85 lg~~~~~~g~~~~A~~~~~ 103 (164)
T 3sz7_A 85 LGLARFDMADYKGAKEAYE 103 (164)
T ss_dssp HHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHH
Confidence 9999999999999997655
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.43 E-value=8.6e-13 Score=115.82 Aligned_cols=126 Identities=16% Similarity=0.071 Sum_probs=111.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---HHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN---ILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np---eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~---vL~~l 248 (331)
..++.|..+...|++++|+.+|++++..+|+++ .+++.+|.+++ ..|++++|+..|+++++.+|+++. ++..+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 467889999999999999999999999999874 68899999876 689999999999999999999875 67888
Q ss_pred HHHHHHH-----------------cCCHHHHHHHHHHHHHhCCCCHHHH-----------------HHHHHHHHHcCCch
Q 020109 249 ADLIWQA-----------------HKDASRAESYFDQAVKSAPDDCYVL-----------------ASYAKFLWDAGEDE 294 (331)
Q Consensus 249 A~ll~~~-----------------~Gd~deAieyferALeldPdna~vl-----------------~~lA~~L~klG~~e 294 (331)
|.+++.. .|++++|+.+|+++++..|++..++ ..+|.+|...|+++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~ 164 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWV 164 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHH
Confidence 8887641 4789999999999999999988665 57899999999999
Q ss_pred HHHhhhh
Q 020109 295 EEEQDNE 301 (331)
Q Consensus 295 Ea~~~~e 301 (331)
+|...++
T Consensus 165 ~A~~~~~ 171 (225)
T 2yhc_A 165 AVVNRVE 171 (225)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998777
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-13 Score=117.54 Aligned_cols=101 Identities=19% Similarity=0.161 Sum_probs=88.3
Q ss_pred HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd----------yeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
.+.+.+++|+.+|+++++++|+++++|+++|.++. ..++ +++|+.+|++||+++|+++.+++.+|.++.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~-~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLL-ELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 34467899999999999999999999999999865 3444 569999999999999999999999999999
Q ss_pred HHc-----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 254 QAH-----------KDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 254 ~~~-----------Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
. . +++++|+++|++|++++|++...+..+..+
T Consensus 92 ~-lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~ 134 (158)
T 1zu2_A 92 S-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT 134 (158)
T ss_dssp H-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred H-hcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 8 6 489999999999999999998665555433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.7e-13 Score=129.50 Aligned_cols=124 Identities=15% Similarity=0.047 Sum_probs=88.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----------------LLLGNYARFLKEVRGDFAKAEELCGRAILAN 238 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~np-----------------eal~~yA~lLy~~~GdyeeAee~~erAL~ld 238 (331)
..++|..+...+++++|+.+|++||..+|.+. .++.++|.++. ..++|++|+.+|++||+++
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~~ 260 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTEE 260 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhC
Confidence 45788899999999999999999999999987 38889999865 6899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-CCchHHHhhhh
Q 020109 239 PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA-GEDEEEEQDNE 301 (331)
Q Consensus 239 P~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl-G~~eEa~~~~e 301 (331)
|+++.+++.+|.+++. .|++++|+.+|+++++++|++..++..++.+.... +..+++...++
T Consensus 261 p~~~~a~~~lg~a~~~-~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~ 323 (338)
T 2if4_A 261 EKNPKALFRRGKAKAE-LGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYK 323 (338)
T ss_dssp TTCHHHHHHHHHHHHT-TTCHHHHHHHHHHTTC-------------------------------
T ss_pred CCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 99999999999999999999999999999885554 44545544443
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-13 Score=115.06 Aligned_cols=127 Identities=15% Similarity=0.165 Sum_probs=114.5
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA------- 237 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALel--------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l------- 237 (331)
.....++|.+|...+++++|+.+|++++.. +|....++.++|.++. ..|++++|+++|++++.+
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~ 163 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGP 163 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 345789999999999999999999999998 5777888899999865 689999999999999999
Q ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------
Q 020109 238 -NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS-------------------------------------------- 272 (331)
Q Consensus 238 -dP~d~~vL~~lA~ll~~~~Gd~deAieyferALel-------------------------------------------- 272 (331)
+|....++..+|.+++. .|++++|+.+|++++++
T Consensus 164 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (283)
T 3edt_B 164 DDPNVAKTKNNLASCYLK-QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYK 242 (283)
T ss_dssp TCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------
T ss_pred CCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHH
Confidence 78888899999999999 99999999999999987
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 273 -----APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 273 -----dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|....++..+|.+|...|++++|...++
T Consensus 243 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 276 (283)
T 3edt_B 243 ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLED 276 (283)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 25566789999999999999999998776
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-12 Score=108.84 Aligned_cols=104 Identities=10% Similarity=0.002 Sum_probs=97.2
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---------- 242 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~---------- 242 (331)
.....|+|.+|...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|++++.+.|.+.
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH-HcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 4467899999999999999999999999999999999999999975 68999999999999999988877
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 243 ------NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 243 ------~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
.++..+|.+++. .|++++|+.+|+++++++|++..
T Consensus 116 ~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~al~~~p~~~~ 156 (213)
T 1hh8_A 116 FKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRH 156 (213)
T ss_dssp CEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGG
T ss_pred cCccchHHHHHHHHHHHH-ccCHHHHHHHHHHHHHcCccccc
Confidence 999999999999 99999999999999999997643
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=123.84 Aligned_cols=125 Identities=15% Similarity=0.110 Sum_probs=118.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...++|.++...+++++|+.+|+++++.+|+ +.++..+|.++. ..|++++|.++|++++..+|+++.++..+|.+++.
T Consensus 245 ~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 322 (537)
T 3fp2_A 245 ALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLA-DKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFI 322 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTC-CSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHH-HhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHh
Confidence 3667889999999999999999999999999 999999999865 68999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.|++++|+.+|+++++.+|++..++..+|.++...|++++|...+++
T Consensus 323 -~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 369 (537)
T 3fp2_A 323 -LQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNE 369 (537)
T ss_dssp -TTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987763
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.7e-12 Score=101.74 Aligned_cols=102 Identities=16% Similarity=0.159 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
+.|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++++.++|+++.++..+|.++.. .|++++|+.+|+++
T Consensus 2 ~~a~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNMLLRFTLGKTYA-EHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQG-QGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHH
Confidence 46899999999999999999999999965 68999999999999999999999999999999999 99999999999999
Q ss_pred HHhCC--CCHHHHHHHHHHHHHcCCc
Q 020109 270 VKSAP--DDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 270 LeldP--dna~vl~~lA~~L~klG~~ 293 (331)
+++.| .+......+...+..+++.
T Consensus 80 l~~~~~~~~~~~~~~l~~~l~~l~~~ 105 (115)
T 2kat_A 80 LAAAQSRGDQQVVKELQVFLRRLARE 105 (115)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccccccHHHHHHHHHHHHHhccc
Confidence 99998 4566667777777666544
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-13 Score=123.14 Aligned_cols=101 Identities=16% Similarity=0.056 Sum_probs=95.8
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
..+.++|..+...+++++|+.+|+++++.+|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++..+|.++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYL-KMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999965 7899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 020109 254 QAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdn 276 (331)
. .|++++|+.+|+++++++|++
T Consensus 84 ~-~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 84 E-MESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp H-TTCHHHHHHHHHHHHHHHHHT
T ss_pred H-cCCHHHHHHHHHHHHHhCccc
Confidence 9 999999999999999999865
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=8.5e-13 Score=121.15 Aligned_cols=129 Identities=9% Similarity=-0.033 Sum_probs=116.1
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.+.....++|..|...|++++|+.+|++++..+|++.......+..+. ..++.++|+..|++++..+|+++.++..+|.
T Consensus 149 ~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~-~~~~~~~a~~~l~~al~~~P~~~~~~~~la~ 227 (287)
T 3qou_A 149 QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELL-XQAADTPEIQQLQQQVAENPEDAALATQLAL 227 (287)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHH-HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHH-hhcccCccHHHHHHHHhcCCccHHHHHHHHH
Confidence 677789999999999999999999999999999965555555554443 5688889999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDD--CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdn--a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++.. .|++++|+..|.++++.+|++ ..++..++.++..+|+.++|....+
T Consensus 228 ~l~~-~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r 279 (287)
T 3qou_A 228 QLHQ-VGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYR 279 (287)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHH-cccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHH
Confidence 9999 999999999999999999988 8999999999999999999987665
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.39 E-value=2.7e-13 Score=127.80 Aligned_cols=114 Identities=10% Similarity=-0.041 Sum_probs=108.6
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------------GNILSLYAD 250 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---------------~~vL~~lA~ 250 (331)
..++++|+.+|++++..+|+++.++.++|.+++ ..+++++|+.+|++|+.++|++ ..++..+|.
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~ 204 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQSTIVKERGTVYF-KEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAM 204 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999976 6899999999999999999999 699999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++. .|++++|+.+|++|++++|++..+++.+|.+|..+|++++|...++
T Consensus 205 ~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 254 (336)
T 1p5q_A 205 CHLK-LQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 254 (336)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9999 9999999999999999999999999999999999999999998776
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.5e-12 Score=123.34 Aligned_cols=129 Identities=13% Similarity=0.131 Sum_probs=112.1
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|.+|...+++++|+.+|++++..+|.++.++..+|.++. ..|++++|..+|++++.++|+++.++..+|.++
T Consensus 270 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 348 (514)
T 2gw1_A 270 VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNF-ILQNYDQAGKDFDKAKELDPENIFPYIQLACLA 348 (514)
T ss_dssp HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHH-HTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHH
Confidence 3456778888888888888888888888888888888888888865 678999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
.. .|++++|+.+|+++++..|++..++..+|.++...|++++|...++..
T Consensus 349 ~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 349 YR-ENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp TT-TTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HH-cCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88 999999999999999999999999999999999999999998776633
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.37 E-value=8.5e-12 Score=95.57 Aligned_cols=101 Identities=19% Similarity=0.247 Sum_probs=94.6
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|..+...+++++|+.+|++++..+|.++.++..+|.++. ..|++++|.+++++++..+|.++.++..+|.+++
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 114 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 114 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 446678999999999999999999999999999999999999865 6899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCC
Q 020109 254 QAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdn 276 (331)
. .|++++|+.+|+++++.+|++
T Consensus 115 ~-~~~~~~A~~~~~~~~~~~~~~ 136 (136)
T 2fo7_A 115 K-QGDYDEAIEYYQKALELDPRS 136 (136)
T ss_dssp T-TTCHHHHHHHHHHHHHHSTTC
T ss_pred H-HccHHHHHHHHHHHHccCCCC
Confidence 9 999999999999999999863
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=132.81 Aligned_cols=115 Identities=16% Similarity=-0.049 Sum_probs=108.4
Q ss_pred HhCCCcHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 184 NNNHGSSSTDAYYEKMI--------EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 184 ~~~gd~ekA~e~yekAL--------eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
...+++++|+++|++++ +.+|+++.++..+|.++. ..|++++|+++|++|++++|+++.++..+|.++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~- 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALL-DLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELL- 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHH-hcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHH-
Confidence 56789999999999999 999999999999999975 67999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++++|+++|++|++++|++..+++++|.+|..+|++++ +..++
T Consensus 480 ~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~ 524 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQ 524 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHH
Confidence 9999999999999999999999999999999999999988 76665
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.5e-12 Score=116.31 Aligned_cols=126 Identities=12% Similarity=0.091 Sum_probs=115.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...+++.++...+++++|..+|++|++.+|.+..++..++.+.+...|++++|..+|++|++.+|+++.++..++.++..
T Consensus 136 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 215 (308)
T 2ond_A 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999998887777644346999999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHh---CC-CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKS---AP-DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALel---dP-dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++++|+.+|+++++. .| +...+|..++.++...|+.+++...++
T Consensus 216 -~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~ 265 (308)
T 2ond_A 216 -LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp -TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999999999996 55 488999999999999999999987665
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.36 E-value=6e-12 Score=102.16 Aligned_cols=94 Identities=15% Similarity=0.133 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD-------CY 278 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn-------a~ 278 (331)
.+.++.++|..++ ..|+|++|+++|++||+++|+++.++..+|.+++. .|++++|+++|+++++++|++ +.
T Consensus 7 ~A~a~~~lG~~~~-~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~a~ 84 (127)
T 4gcn_A 7 AAIAEKDLGNAAY-KQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFE-EKKFAECVQFCEKAVEVGRETRADYKLIAK 84 (127)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHH-hhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence 3556778998876 68999999999999999999999999999999999 999999999999999999865 35
Q ss_pred HHHHHHHHHHHcCCchHHHhhhh
Q 020109 279 VLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 279 vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++..+|.++..++++++|...++
T Consensus 85 ~~~~lg~~~~~~~~~~~A~~~~~ 107 (127)
T 4gcn_A 85 AMSRAGNAFQKQNDLSLAVQWFH 107 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHH
Confidence 78899999999999999997765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=122.29 Aligned_cols=129 Identities=16% Similarity=0.118 Sum_probs=120.7
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|.+|...+++++|+.+|+++++.+|+++.++..+|.++. ..|++++|..+|++++..+|+++.++..+|.+
T Consensus 303 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 381 (514)
T 2gw1_A 303 NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAY-RENKFDDCETLFSEAKRKFPEAPEVPNFFAEI 381 (514)
T ss_dssp CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTT-TTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHcccCHHHHHHHHHH
Confidence 45567899999999999999999999999999999999999999965 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---cCCchHHHhhhhh
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCY------VLASYAKFLWD---AGEDEEEEQDNEE 302 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~------vl~~lA~~L~k---lG~~eEa~~~~e~ 302 (331)
++. .|++++|+.+|+++++..|++.. ++..+|.++.. .|++++|...++.
T Consensus 382 ~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~ 440 (514)
T 2gw1_A 382 LTD-KNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEK 440 (514)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHH
T ss_pred HHH-CCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHH
Confidence 999 99999999999999999998855 99999999999 9999999987763
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.9e-12 Score=97.15 Aligned_cols=98 Identities=19% Similarity=0.131 Sum_probs=92.0
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
.|.++..+..+|.+++ ..+++++|+++|++++..+|+++.++..+|.+++. .+++++|+.+|+++++.+|++..+++.
T Consensus 12 ~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~ 89 (133)
T 2lni_A 12 NPDLALMVKNKGNECF-QKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTK-LLEFQLALKDCEECIQLEPTFIKGYTR 89 (133)
T ss_dssp SSCHHHHHHHHHHHHH-HTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTT-TTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHH-hccHHHHHHHHHHHHHhCCCchHHHHH
Confidence 5667888999998865 68999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHhhhhh
Q 020109 283 YAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 283 lA~~L~klG~~eEa~~~~e~ 302 (331)
+|.++...|++++|...+++
T Consensus 90 la~~~~~~~~~~~A~~~~~~ 109 (133)
T 2lni_A 90 KAAALEAMKDYTKAMDVYQK 109 (133)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHH
Confidence 99999999999999987763
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-12 Score=113.14 Aligned_cols=127 Identities=16% Similarity=0.197 Sum_probs=113.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEAN--------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILA------- 237 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeld--------P~npeal~~yA~lLy~~~GdyeeAee~~erAL~l------- 237 (331)
.....++|.+|...+++++|+.+|+++++.. |....++..+|.++. ..|++++|+++|++++.+
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3457899999999999999999999999984 556777888998865 689999999999999998
Q ss_pred -CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------------------------------------------
Q 020109 238 -NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKS-------------------------------------------- 272 (331)
Q Consensus 238 -dP~d~~vL~~lA~ll~~~~Gd~deAieyferALel-------------------------------------------- 272 (331)
+|..+.++..+|.+++. .|++++|+.+|++++++
T Consensus 190 ~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 268 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLK-QGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYK 268 (311)
T ss_dssp TCHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC----
T ss_pred CCHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHh
Confidence 78888899999999999 99999999999999985
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 273 -----APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 273 -----dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|....++..+|.+|...|++++|...++
T Consensus 269 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 302 (311)
T 3nf1_A 269 ACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEE 302 (311)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 46777889999999999999999997765
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=9.2e-12 Score=100.43 Aligned_cols=90 Identities=11% Similarity=-0.053 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 210 l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
++.+|..+. ..|++++|+.+|++|++++|+++.++..+|.++.. .|++++|+.+|++|++++|++..+++.+|.+|..
T Consensus 20 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 566777765 68999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchHHHhhhh
Q 020109 290 AGEDEEEEQDNE 301 (331)
Q Consensus 290 lG~~eEa~~~~e 301 (331)
.|++++|...++
T Consensus 98 ~g~~~~A~~~~~ 109 (121)
T 1hxi_A 98 EHNANAALASLR 109 (121)
T ss_dssp HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH
Confidence 999999998876
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.1e-12 Score=112.90 Aligned_cols=128 Identities=20% Similarity=0.227 Sum_probs=114.0
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEA--------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILAN------- 238 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALel--------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ld------- 238 (331)
....++|.+|...+++++|+.+|++++.. +|....++..+|.++. ..|++++|+++|++++.+.
T Consensus 70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~ 148 (311)
T 3nf1_A 70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYG-KRGKYKEAEPLCKRALEIREKVLGKD 148 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-HcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence 45778999999999999999999999998 4566778889998865 6899999999999999884
Q ss_pred -CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 239 -PSDGNILSLYADLIWQAHKDASRAESYFDQAVKS--------APDDCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 239 -P~d~~vL~~lA~ll~~~~Gd~deAieyferALel--------dPdna~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
|....++..+|.+++. .|++++|+++|++++++ .|....++..+|.++...|++++|...+++.
T Consensus 149 ~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 149 HPDVAKQLNNLALLCQN-QGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp CHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6677788999999999 99999999999999999 7788889999999999999999999766543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-12 Score=96.15 Aligned_cols=94 Identities=12% Similarity=-0.012 Sum_probs=85.5
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYV 279 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn------a~v 279 (331)
++..+..+|.+++ ..|++++|+++|++|+.++|+++.++..+|.+++. .|++++|+++|+++++++|++ ..+
T Consensus 3 ~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 80 (111)
T 2l6j_A 3 QFEKQKEQGNSLF-KQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIK-LGEYTQAIQMCQQGLRYTSTAEHVAIRSKL 80 (111)
T ss_dssp HHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTSCSSTTSHHHHHHH
T ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCccHHHHHHHH
Confidence 4567888898865 68999999999999999999999999999999999 999999999999999999998 889
Q ss_pred HHHHHHHHHHcCCchHHHhhhh
Q 020109 280 LASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 280 l~~lA~~L~klG~~eEa~~~~e 301 (331)
++.++.++..+|+++++...++
T Consensus 81 ~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 81 QYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHHhHhhhHhHHH
Confidence 9999999999998888876655
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.34 E-value=5.9e-12 Score=99.52 Aligned_cols=125 Identities=13% Similarity=0.023 Sum_probs=107.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------G 242 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np------eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~ 242 (331)
...++|.+|...+++++|+.+|+++++..+... .++..+|.++. ..|++++|.++|++++.+.+.. .
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 457899999999999999999999999866432 46778888865 6899999999999999887653 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldP------dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.+++. .|++++|+.++++++++.+ ....++..++.++...|++++|...++
T Consensus 90 ~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 153 (164)
T 3ro3_A 90 QSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 153 (164)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 678899999999 9999999999999998843 235678899999999999999997665
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.2e-11 Score=95.07 Aligned_cols=100 Identities=16% Similarity=0.081 Sum_probs=92.2
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020109 201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 201 eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl 280 (331)
+.+|.++..+..+|.+++ ..+++++|..+|++++..+|+++.++..+|.+++. .+++++|+.+|+++++.+|++..++
T Consensus 6 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~ 83 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQM-KVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSK-LGNYAGAVQDCERAICIDPAYSKAY 83 (131)
T ss_dssp -CHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hcchhhhHHHHHHHHHHH-HccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH-hhchHHHHHHHHHHHhcCccCHHHH
Confidence 345667888889998865 68999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHhhhhh
Q 020109 281 ASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 281 ~~lA~~L~klG~~eEa~~~~e~ 302 (331)
..+|.++...|++++|...++.
T Consensus 84 ~~~~~~~~~~~~~~~A~~~~~~ 105 (131)
T 2vyi_A 84 GRMGLALSSLNKHVEAVAYYKK 105 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999987763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=8.9e-12 Score=118.17 Aligned_cols=125 Identities=19% Similarity=0.171 Sum_probs=103.3
Q ss_pred ccHHHHH--HhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 177 GSNNNYS--NNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 177 ~N~A~~y--~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~--~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.|.|..+ ...++|++|+.+|++|++++|+++.++..++.+++. ..+++++|+++|++|++++|+++.++..++..+
T Consensus 140 ~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~ 219 (472)
T 4g1t_A 140 CEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL 219 (472)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence 3444333 445689999999999999999999999999877543 357788999999999999999999999888766
Q ss_pred HH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQ---AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~---~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. ..+++++|+.+|+++++.+|++..++..+|.+|...|++++|...++
T Consensus 220 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 271 (472)
T 4g1t_A 220 HKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLK 271 (472)
T ss_dssp HHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 54 14788899999999999999999999999999999999999997765
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.6e-11 Score=113.42 Aligned_cols=125 Identities=10% Similarity=-0.036 Sum_probs=110.9
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|..|...|++++|+.+|++ |.++.++..++.++. ..|++++|+++|+++++.+|++..+....+++
T Consensus 100 ~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~ 173 (291)
T 3mkr_A 100 NTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSLECMAMTVQILL-KLDRLDLARKELKKMQDQDEDATLTQLATAWV 173 (291)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHH
Confidence 556788999999999999999999998 899999999999865 78999999999999999999998666555544
Q ss_pred HHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 252 IWQA-HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 252 l~~~-~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.+.. .|++++|+.+|+++++..|+++.++..+|.++..+|++++|+..+++
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 4321 48999999999999999999999999999999999999999988873
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.5e-11 Score=91.03 Aligned_cols=94 Identities=18% Similarity=0.017 Sum_probs=88.3
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~ 285 (331)
.+..+..+|.++. ..+++++|..+|++++..+|+++.++..+|.+++. .+++++|+.+|+++++.+|++..++..+|.
T Consensus 3 ~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3567788888865 68999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcCCchHHHhhhh
Q 020109 286 FLWDAGEDEEEEQDNE 301 (331)
Q Consensus 286 ~L~klG~~eEa~~~~e 301 (331)
++...|++++|...++
T Consensus 81 ~~~~~~~~~~A~~~~~ 96 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYE 96 (118)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHH
Confidence 9999999999998776
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=8.2e-12 Score=114.21 Aligned_cols=123 Identities=11% Similarity=0.020 Sum_probs=106.7
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPG------NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNIL 245 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~------npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~~vL 245 (331)
..+..|...+++++|+.+|++|+++.+. .+.++.++|.++. ..|++++|+.+|++|+.+.|.. +.++
T Consensus 42 ~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~ 120 (292)
T 1qqe_A 42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFK-SGGNSVNAVDSLENAIQIFTHRGQFRRGANFK 120 (292)
T ss_dssp HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3466888999999999999999998542 2567888998864 7899999999999999998764 5688
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 246 SLYADLIWQAH-KDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 246 ~~lA~ll~~~~-Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
..+|.++.. . |++++|+.+|++|+++.|.+ ..++..+|.++..+|++++|...+++
T Consensus 121 ~~lg~~~~~-~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 183 (292)
T 1qqe_A 121 FELGEILEN-DLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183 (292)
T ss_dssp HHHHHHHHH-TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-hhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 899999998 8 99999999999999998854 56789999999999999999987763
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.31 E-value=5.7e-11 Score=90.45 Aligned_cols=99 Identities=18% Similarity=0.318 Sum_probs=89.2
Q ss_pred hCCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020109 202 ANPGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 202 ldP~n-peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl 280 (331)
.+|.+ ..++..+|.++. ..+++++|+++|++++..+|+++.++..+|.+++. .|++++|+.+|+++++..|++..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~ 80 (125)
T 1na0_A 3 MDPGNSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAW 80 (125)
T ss_dssp ----CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CCccccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHhCCccHHHH
Confidence 45665 778888998865 68999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHcCCchHHHhhhhh
Q 020109 281 ASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 281 ~~lA~~L~klG~~eEa~~~~e~ 302 (331)
..++.++...|++++|...+++
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 81 YNLGNAYYKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999987763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=2.3e-12 Score=110.24 Aligned_cols=115 Identities=13% Similarity=-0.032 Sum_probs=102.6
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----------------NILSLY 248 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~----------------~vL~~l 248 (331)
..+.+++|++.|+......+..+..+..+|.+++ ..++|++|+++|++|+.+.|.++ .++..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFF-KKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 3478889999998888888888999999999876 68999999999999999999998 899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|.+++. .+++++|+.+|+++++++|++..+++.+|.+|..+|++++|...++
T Consensus 95 a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ 146 (198)
T 2fbn_A 95 ATCYNK-NKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLY 146 (198)
T ss_dssp HHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHH-hcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 999999 9999999999999999999999999999999999999999997776
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-11 Score=96.10 Aligned_cols=100 Identities=16% Similarity=0.093 Sum_probs=93.5
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 201 eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
..+|.+...+..+|..++ ..+++++|+++|++++.++|++ ..++..+|.+++. .+++++|+.+|+++++++|++.
T Consensus 22 ~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~~~~~~~~~~ 99 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELF-KCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLK-LEDYDKAETEASKAIEKDGGDV 99 (148)
T ss_dssp CTTCCCHHHHHHHHHHHH-TTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTSCCH
T ss_pred ccchHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHH-HccHHHHHHHHHHHHhhCccCH
Confidence 457889999999998865 6899999999999999999998 8999999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 278 YVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 278 ~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.+++.+|.++...|++++|...+++
T Consensus 100 ~~~~~~a~~~~~~~~~~~A~~~~~~ 124 (148)
T 2dba_A 100 KALYRRSQALEKLGRLDQAVLDLQR 124 (148)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999999999999987763
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=3.7e-11 Score=113.89 Aligned_cols=125 Identities=10% Similarity=0.048 Sum_probs=99.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEA---------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA-------- 237 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALel---------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l-------- 237 (331)
...++|..|..+|++++|+.+|++|+++ +|.....+.++|.+++ ..|++++|+.+|++++++
T Consensus 53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~-~~g~~~~A~~~~~ka~~i~~~~~~~~ 131 (472)
T 4g1t_A 53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYY-HMGRLSDVQIYVDKVKHVCEKFSSPY 131 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHhHhccccc
Confidence 3456899999999999999999999986 6777888889998865 689999999999999886
Q ss_pred CCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---CCchHHHhhh
Q 020109 238 NPSDGNILSLYADLIWQA-HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA---GEDEEEEQDN 300 (331)
Q Consensus 238 dP~d~~vL~~lA~ll~~~-~Gd~deAieyferALeldPdna~vl~~lA~~L~kl---G~~eEa~~~~ 300 (331)
.+..+.++...|+++... .+++++|+++|++|++++|+++.++..++.++... ++.++|...+
T Consensus 132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~ 198 (472)
T 4g1t_A 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL 198 (472)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHH
T ss_pred chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 345677888888776551 35789999999999999999999988888876544 5555555444
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-11 Score=88.78 Aligned_cols=85 Identities=16% Similarity=0.251 Sum_probs=76.6
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYA 284 (331)
Q Consensus 205 ~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA 284 (331)
.++.+++.+|.++. ..+++++|+.+|++++.++|+++.++..+|.+++. .+++++|+.+|+++++++|++..++..++
T Consensus 7 ~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p~~~~~~~~l~ 84 (91)
T 1na3_A 7 NSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK-QGDYDEAIEYYQKALELDPNNAEAKQNLG 84 (91)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH-HhhHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 45778888898865 68999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHHHHcC
Q 020109 285 KFLWDAG 291 (331)
Q Consensus 285 ~~L~klG 291 (331)
.++...|
T Consensus 85 ~~~~~~g 91 (91)
T 1na3_A 85 NAKQKQG 91 (91)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9987754
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=127.96 Aligned_cols=115 Identities=12% Similarity=0.014 Sum_probs=108.9
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---------------HHHHHHHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------------GNILSLYA 249 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---------------~~vL~~lA 249 (331)
..+++++|+.+|+++++.+|.++..+.++|.+++ ..++|++|+.+|++|+.++|++ ..++..+|
T Consensus 246 ~l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~-~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla 324 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYF-KGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLA 324 (457)
T ss_dssp EEEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHH
Confidence 4467889999999999999999999999999976 6899999999999999999999 79999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++++ .+++++|+.+|++|++++|++..+++.+|.+|..++++++|...++
T Consensus 325 ~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~ 375 (457)
T 1kt0_A 325 MCYLK-LREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFE 375 (457)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHH-hcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 99999 9999999999999999999999999999999999999999998876
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-11 Score=104.66 Aligned_cols=123 Identities=15% Similarity=0.091 Sum_probs=87.8
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILSL 247 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP~d~~vL~~ 247 (331)
+.....++|..|...+++++|+.+|+++++ |+++.+++.+|.++. . .+++++|.++|++|++.+ ++.++..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~-~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYY-QGQGVEKNLKKAASFYAKACDLN--YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHH-cCCCcCCCHHHHHHHHHHHHHCC--CHHHHHH
Confidence 444566777777777777777777777777 667777777777753 5 677777777777777764 6777777
Q ss_pred HHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 248 YADLIWQ---AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 248 lA~ll~~---~~Gd~deAieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
+|.+++. ..+++++|+.+|+++++.+ ++.++..+|.+|.. .+++++|...++
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~ 138 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFT 138 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 7777653 1577777777777777763 67777777777777 777777776554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.4e-11 Score=108.14 Aligned_cols=119 Identities=10% Similarity=0.016 Sum_probs=103.4
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAI---LANPSDG---- 242 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL---~ldP~d~---- 242 (331)
..++|.++...+++++|+.+|++++...+.. ..++.++|.++. ..|++++|.++|++|+ ...|++.
T Consensus 118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 3557788899999999999999999876554 557888998865 6899999999999999 6677754
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCchHH
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD------DCYVLASYAKFLWDAGEDEEE 296 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPd------na~vl~~lA~~L~klG~~eEa 296 (331)
.++..+|.+++. .|++++|+.+|++|+++.++ .+.+++.+|.+|..+|++++|
T Consensus 197 ~~~~nlg~~y~~-~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 255 (293)
T 2qfc_A 197 KVRYNHAKALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE 255 (293)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhHHHHHHH-HhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 688899999999 99999999999999998653 278899999999999999999
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=115.24 Aligned_cols=127 Identities=10% Similarity=0.014 Sum_probs=111.5
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG--- 242 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n-------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~--- 242 (331)
.....++|.+|...+++++|+.+|++|+++.+.. ..++.++|.++. ..|++++|+++|++|+.+.+...
T Consensus 143 a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~ 221 (383)
T 3ulq_A 143 AEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQ 221 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChH
Confidence 4568899999999999999999999999985543 457788888864 78999999999999998866443
Q ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hC-CCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 ---NILSLYADLIWQAHKDASRAESYFDQAVK-----SA-PDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ---~vL~~lA~ll~~~~Gd~deAieyferALe-----ld-Pdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.+++. .|++++|+.+|++|++ .+ |..+.++..+|.++..+|++++|...++
T Consensus 222 ~~~~~~~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 288 (383)
T 3ulq_A 222 LMGRTLYNIGLCKNS-QSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHS 288 (383)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 488899999999 9999999999999999 56 8889999999999999999999997655
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-11 Score=114.46 Aligned_cols=125 Identities=9% Similarity=0.047 Sum_probs=112.8
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNI 244 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np----eal~~yA~lLy~~~GdyeeAee~~erAL~l------dP~d~~v 244 (331)
.+...|..+...+++++|+.+|+++++.+|+++ .++..+|.+++ ..|++++|+++|++|+.+ +|....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYF-YLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 356789999999999999999999999999997 47788898865 689999999999999998 6888899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCC-----------------chHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKS------APDDCYVLASYAKFLWDAGE-----------------DEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALel------dPdna~vl~~lA~~L~klG~-----------------~eEa~~~~e 301 (331)
+..+|.+++. .|++++|+.+|++++++ .|....++..+|.+|...|+ +++|...++
T Consensus 129 ~~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 129 SGNLGNTLKV-MGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 9999999999 99999999999999999 66778899999999999999 888876554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.26 E-value=3.4e-11 Score=92.75 Aligned_cols=96 Identities=11% Similarity=0.140 Sum_probs=88.5
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------H
Q 020109 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD-------C 277 (331)
Q Consensus 205 ~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn-------a 277 (331)
..+..+..+|.+++ ..+++++|..+|++++..+|+++.++..+|.+++. .+++++|+.+|+++++..|++ .
T Consensus 2 ~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 79 (131)
T 1elr_A 2 KQALKEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIA 79 (131)
T ss_dssp HHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred hHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhccccchhHHHHH
Confidence 34677888998865 68999999999999999999999999999999999 999999999999999999877 9
Q ss_pred HHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 278 YVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 278 ~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
.+++.+|.++...|++++|...++.
T Consensus 80 ~~~~~la~~~~~~~~~~~A~~~~~~ 104 (131)
T 1elr_A 80 KAYARIGNSYFKEEKYKDAIHFYNK 104 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999999999999987763
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-11 Score=119.95 Aligned_cols=129 Identities=15% Similarity=0.153 Sum_probs=116.4
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~np-eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+..+..+++.++...+++++|..+|+++++.+|.++ .+|..|+.++. ..|++++|.++|++|++..|.+..++...+.
T Consensus 320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~ 398 (530)
T 2ooe_A 320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAAL 398 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHTCTTCCTHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHH-HhcCHHHHHHHHHHHHhccCCchHHHHHHHH
Confidence 456788999999999999999999999999999996 68999999865 5789999999999999999998888777777
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+.+...|++++|..+|+++++..|+++.+|..++.++...|+.++|...++
T Consensus 399 ~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~ 449 (530)
T 2ooe_A 399 MEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 449 (530)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHH
T ss_pred HHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHH
Confidence 654338999999999999999999999999999999999999999998776
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.26 E-value=5.1e-11 Score=93.32 Aligned_cols=92 Identities=18% Similarity=0.163 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDG---NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLAS 282 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~---~vL~~lA~ll~~~~Gd~deAieyferALeldPdn---a~vl~~ 282 (331)
.++.+|.+++ ..|++++|..+|++++..+|+++ .++..+|.+++. .|++++|+.+|+++++.+|++ +.+++.
T Consensus 4 ~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (129)
T 2xev_A 4 TAYNVAFDAL-KNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYA-TRNFQLAEAQFRDLVSRYPTHDKAAGGLLK 81 (129)
T ss_dssp CHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTSTTHHHHHHH
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHCCCCcccHHHHHH
Confidence 4567787765 68999999999999999999999 799999999999 999999999999999999999 899999
Q ss_pred HHHHHHHcCCchHHHhhhhh
Q 020109 283 YAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 283 lA~~L~klG~~eEa~~~~e~ 302 (331)
+|.++..+|++++|...++.
T Consensus 82 la~~~~~~g~~~~A~~~~~~ 101 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQ 101 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 99999999999999987763
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-11 Score=98.26 Aligned_cols=93 Identities=18% Similarity=0.094 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILA------------------NPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~l------------------dP~d~~vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
+..+...|..++ ..|+|++|+.+|.+||.+ +|.++.++..+|.+++. .|++++|+.++++
T Consensus 11 a~~~~~~G~~~~-~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~~~~~~A~~~~~~ 88 (162)
T 3rkv_A 11 VEALRQKGNELF-VQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLN-IGDLHEAEETSSE 88 (162)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHH-HTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHh-cCcHHHHHHHHHH
Confidence 456677888876 689999999999999999 77888999999999999 9999999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 269 AVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 269 ALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++++|+++.+++.+|.+|..+|++++|...++
T Consensus 89 al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~ 121 (162)
T 3rkv_A 89 VLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121 (162)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHH
Confidence 999999999999999999999999999998776
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.3e-11 Score=111.97 Aligned_cols=124 Identities=10% Similarity=0.040 Sum_probs=107.7
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------G 242 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~--n----peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~ 242 (331)
.+.|+|.+|...+++++|+.+|++|+++.+. + ..++.++|.++. . |++++|+++|++|+.+.|.. .
T Consensus 78 ~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~~~~~~~~ 155 (307)
T 2ifu_A 78 AFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLME-P-LDLSKAVHLYQQAAAVFENEERLRQAA 155 (307)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT-T-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-c-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence 5678999999999999999999999998543 3 356778888864 5 99999999999999998764 6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.++.. .|++++|+.+|++++++.|.+ ..++..++.++..+|++++|...++
T Consensus 156 ~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~ 219 (307)
T 2ifu_A 156 ELIGKASRLLVR-QQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVR 219 (307)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 788899999999 999999999999999997643 3478889999999999999998887
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.24 E-value=2e-11 Score=102.12 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=106.5
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCC--
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIE------ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILA---NPSD-- 241 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALe------ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~l---dP~d-- 241 (331)
.....++|.+|...+++++|+.+|++++. ..|....++.++|.++. ..|++++|+++|++|+.+ .+++
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~ 104 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER-MAGNWDAARRCFLEERELLASLPEDPL 104 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCccHH
Confidence 34577899999999999999999999999 44556778888998865 789999999999999998 4433
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 --GNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDC----YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 --~~vL~~lA~ll~~~~Gd~deAieyferALeldP--dna----~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..++..+|.+++. .|++++|+.+|++++++.+ .+. .++..+|.++...|++++|...++
T Consensus 105 ~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 171 (203)
T 3gw4_A 105 AASANAYEVATVALH-FGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWL 171 (203)
T ss_dssp HHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 4568889999999 9999999999999998743 232 346899999999999999986554
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-10 Score=93.12 Aligned_cols=94 Identities=17% Similarity=-0.012 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~ 286 (331)
+..+..+|.+++ ..|++++|..+|++++.++|+++.++..+|.+++. .+++++|+.+|+++++++|++..+++.+|.+
T Consensus 13 ~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~-~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 13 AEELKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 566778888865 68999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred HHHcCCchHHHhhhhh
Q 020109 287 LWDAGEDEEEEQDNEE 302 (331)
Q Consensus 287 L~klG~~eEa~~~~e~ 302 (331)
+...|++++|...++.
T Consensus 91 ~~~~~~~~~A~~~~~~ 106 (166)
T 1a17_A 91 NMALGKFRAALRDYET 106 (166)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHH
Confidence 9999999999987763
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.24 E-value=2.7e-11 Score=110.13 Aligned_cols=122 Identities=10% Similarity=0.018 Sum_probs=101.0
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILA-------NPSDGNI 244 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL~l-------dP~d~~v 244 (331)
+++.++...+++++|+.+|++|+...+.. ..++.++|.++. ..|++++|+++|++|+.. .+..+.+
T Consensus 120 ~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 198 (293)
T 3u3w_A 120 YVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKV 198 (293)
T ss_dssp HHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence 47778888889999999999999975543 236788998865 689999999999999952 2234457
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC-chHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGE-DEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~-~eEa~~~~e 301 (331)
+..+|.+++. .|++++|++++++|+++.+.. +.+++.+|.++..+|+ +++|...++
T Consensus 199 ~~nlg~~y~~-~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~ 261 (293)
T 3u3w_A 199 RYNHAKALYL-DSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYK 261 (293)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 8899999999 999999999999999987644 7899999999999996 488875443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2e-11 Score=111.69 Aligned_cols=126 Identities=13% Similarity=-0.008 Sum_probs=111.4
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSD------ 241 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------ 241 (331)
....|+|.+|...+++++|+.+|++++++.|.... ++.++|.++. ..|++++|+.+|++++.+.|..
T Consensus 188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 266 (406)
T 3sf4_A 188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVE 266 (406)
T ss_dssp HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHhCcCchHH
Confidence 35778999999999999999999999998776543 7888898865 6899999999999999998876
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..++..+|.++.. .|++++|+.+|++++++.+.. ..++..+|.+|...|++++|...++
T Consensus 267 ~~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 331 (406)
T 3sf4_A 267 AQSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE 331 (406)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 7888999999999 999999999999999996644 6789999999999999999996554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.1e-10 Score=106.91 Aligned_cols=97 Identities=15% Similarity=0.064 Sum_probs=91.9
Q ss_pred CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 204 PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 204 P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
|.++..+..+|..++ ..|++++|+.+|++|+..+|+++.++..+|.+++. .|++++|+.+|++|++++|++..+++.+
T Consensus 1 p~~a~~~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l 78 (281)
T 2c2l_A 1 SPSAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFL 78 (281)
T ss_dssp CCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHH
T ss_pred ChhHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 678889999999876 68999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHcCCchHHHhhhhh
Q 020109 284 AKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 284 A~~L~klG~~eEa~~~~e~ 302 (331)
|.+|..+|++++|...++.
T Consensus 79 g~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHH
Confidence 9999999999999987763
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=4.7e-12 Score=96.51 Aligned_cols=92 Identities=14% Similarity=0.109 Sum_probs=83.5
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILSLY 248 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~~vL~~l 248 (331)
...++|..+...+++++|+.+|+++++.+|+++.++.++|.++. ..|++++|+++|++++.++|++ ..++..+
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~ 84 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALI-KLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL 84 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence 35678999999999999999999999999999999999999975 6899999999999999999999 8899999
Q ss_pred HHHHHHHcCCHHHHHHHHHH
Q 020109 249 ADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyfer 268 (331)
+.++.. .|++++|+..|++
T Consensus 85 ~~~~~~-~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 85 ELAQGA-VGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHH-HHCCCCCSSSSSS
T ss_pred HHHHHH-HHhHhhhHhHHHH
Confidence 999888 8888877766554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-10 Score=99.97 Aligned_cols=122 Identities=19% Similarity=0.130 Sum_probs=65.3
Q ss_pred CcccccHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 173 SGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 173 ~~~~~N~A~~y~~----~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP~d~~v 244 (331)
.....++|.+|.. .+++++|+.+|+++++.+ ++.++.++|.++. . .+++++|+++|++|++.+ ++.+
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~-~~~~~~~~~~~A~~~~~~a~~~~--~~~a 148 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYH-DGKVVTRDFKKAVEYFTKACDLN--DGDG 148 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHTT--CHHH
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHH-cCCCcccCHHHHHHHHHHHHhcC--cHHH
Confidence 3344555555555 555555555555555542 5555555555532 3 455555555555555544 4555
Q ss_pred HHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 245 LSLYADLIWQ---AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~---~~Gd~deAieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
+..+|.++.. ..+++++|+.+|+++++. +++.+++.+|.+|.. .+++++|..-++
T Consensus 149 ~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 149 CTILGSLYDAGRGTPKDLKKALASYDKACDL--KDSPGCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 5555555443 135555555555555555 234555555555555 555555554443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.20 E-value=5.6e-11 Score=104.50 Aligned_cols=115 Identities=8% Similarity=0.064 Sum_probs=101.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNIL 245 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~np----eal~~yA~lLy~~~GdyeeAee~~erAL~l------dP~d~~vL 245 (331)
+...|..+...+++++|+.+|+++++.+|+++ .++..+|.++. ..|++++|.+++++++.+ .|..+.++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 34568899999999999999999999999995 56778888865 689999999999999988 56678889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGE 292 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~ 292 (331)
..+|.+++. .|++++|+.+|++++++.+.. ..++..++.++...|+
T Consensus 87 ~~l~~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 87 GNLGNTLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 999999999 999999999999999987643 4488999999999999
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.1e-11 Score=106.18 Aligned_cols=125 Identities=13% Similarity=-0.001 Sum_probs=109.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------H
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------G 242 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np------eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~ 242 (331)
...++|.+|...+++++|+.+|+++++..+... .++..+|.++. ..|++++|.+++++++.+.+.. .
T Consensus 185 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (338)
T 3ro2_A 185 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI-FLGEFETASEYYKKTLLLARQLKDRAVEA 263 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence 577899999999999999999999999866532 27788888865 6899999999999999988776 7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.+++. .|++++|+.+|++++++.+.. ..++..++.++...|++++|...++
T Consensus 264 ~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (338)
T 3ro2_A 264 QSCYSLGNTYTL-LQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAE 327 (338)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 788999999999 999999999999999986632 5688899999999999999997765
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.4e-11 Score=108.34 Aligned_cols=116 Identities=8% Similarity=0.052 Sum_probs=103.7
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNI 244 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np----eal~~yA~lLy~~~GdyeeAee~~erAL~l------dP~d~~v 244 (331)
.+.+.|..+...+++++|+.+|+++++.+|+++ .++..+|.+++ ..|++++|..+|++|+.+ .|..+.+
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYF-YLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 467889999999999999999999999999985 56778888865 689999999999999988 4566788
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCC
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGE 292 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~ 292 (331)
+..+|.+++. .|++++|+.+|++++++.|.. +.++..+|.++...|+
T Consensus 90 ~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 142 (406)
T 3sf4_A 90 SGNLGNTLKV-LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 142 (406)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence 9999999999 999999999999999997743 5589999999999999
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-10 Score=90.16 Aligned_cols=89 Identities=12% Similarity=0.051 Sum_probs=75.5
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHH
Q 020109 202 ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP--DDCYV 279 (331)
Q Consensus 202 ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldP--dna~v 279 (331)
.+|+++.+++.+|.+++ ..|++++|+.+|++|++++|+++.++..+|.++.. .|++++|+.+|++++++.| .+...
T Consensus 2 ~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~~~~~ 79 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHL-KHDNASRALALFEELVETDPDYVGTYYHLGKLYER-LDRTDDAIDTYAQGIEVAREEGTQKD 79 (100)
T ss_dssp ---CCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCccCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhhhcCCchhH
Confidence 58999999999999975 68999999999999999999999999999999999 9999999999999999987 45556
Q ss_pred HHHHHHHHHHcCC
Q 020109 280 LASYAKFLWDAGE 292 (331)
Q Consensus 280 l~~lA~~L~klG~ 292 (331)
...+..++...+.
T Consensus 80 ~~~l~~~l~~~~~ 92 (100)
T 3ma5_A 80 LSELQDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHccc
Confidence 6666666655443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.9e-10 Score=100.60 Aligned_cols=93 Identities=22% Similarity=0.150 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------DGN-----ILSLYADLIWQAHKDASRAESYFDQAVKS-- 272 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-------d~~-----vL~~lA~ll~~~~Gd~deAieyferALel-- 272 (331)
...+.+.|..++ ..|+|++|+.+|++||+++|+ +.. +|.++|.++.. .|++++|+..|++||++
T Consensus 11 a~~~~~~G~~l~-~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~-Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 11 AYLALSDAQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhhh
Confidence 455677888876 579999999999999999999 544 99999999999 99999999999999999
Q ss_pred -----CCCCHHHH----HHHHHHHHHcCCchHHHhhhh
Q 020109 273 -----APDDCYVL----ASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 273 -----dPdna~vl----~~lA~~L~klG~~eEa~~~~e 301 (331)
+|++..+| +++|.+|..+|+++||...++
T Consensus 89 ~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~ 126 (159)
T 2hr2_A 89 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFK 126 (159)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHH
Confidence 99999999 999999999999999997765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.9e-11 Score=112.18 Aligned_cols=122 Identities=13% Similarity=-0.018 Sum_probs=105.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHh---CC---CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------CHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEA---NP---GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-------DGNI 244 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALel---dP---~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-------d~~v 244 (331)
..|.++...+++++|+.+|++|+.+ .+ ..+.++..+|.+++ ..|++++|.+++++|+.+.+. .+.+
T Consensus 108 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 186 (383)
T 3ulq_A 108 FRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYY-YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC 186 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhCccchHHHHHH
Confidence 4788999999999999999999997 23 35678899999965 689999999999999998544 3458
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPDDC------YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPdna------~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+..+|.++.. .|++++|+++|++|+++.+... .++.++|.+|..+|++++|...++
T Consensus 187 ~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 187 HSLFATNFLD-LKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 8899999999 9999999999999999966332 589999999999999999997665
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.3e-11 Score=111.11 Aligned_cols=126 Identities=12% Similarity=-0.016 Sum_probs=109.8
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPSD------ 241 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------ 241 (331)
....++|.+|...+++++|+.+|++++++.|.... ++.++|.++. ..|++++|+++|++++.+.+..
T Consensus 224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~ 302 (411)
T 4a1s_A 224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVE 302 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 35788999999999999999999999999876433 7788898864 6899999999999999998855
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPD------DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldPd------na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..++..+|.+++. .|++++|+.+|++++++.+. ...++..+|.+|...|++++|...++
T Consensus 303 ~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 367 (411)
T 4a1s_A 303 AQSCYSLGNTYTL-LHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE 367 (411)
T ss_dssp HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 7788999999999 99999999999999999653 25688999999999999999985433
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=99.54 Aligned_cols=124 Identities=10% Similarity=-0.022 Sum_probs=103.6
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALL------LGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNI 244 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npea------l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~~v 244 (331)
.+.+..+...+++++|+.+|+++++..+..... ++.+|.++ ...+++++|+++|++|+.+.+.. ..+
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYV-LKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHH-HTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 456778899999999999999999998876533 34455553 35789999999999999876654 668
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAV---KSAPDDC----YVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferAL---eldPdna----~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+..+|.++.. .|++++|+.+|++|+ +..|++. .+++++|.+|..+|++++|..-+++
T Consensus 158 ~~~lg~~y~~-~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~k 221 (293)
T 2qfc_A 158 ENAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNK 221 (293)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 8999999999 999999999999999 5567643 6899999999999999999976653
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.16 E-value=5.2e-11 Score=90.24 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=69.6
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npe-al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+.|..+...+++++|+.+|+++++.+|+++. ++.++|.++. ..|++++|+++|++++.++|+++.++..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~-------- 74 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYR-KLGDWQKALNNYQSAIELNPDSPALQAR-------- 74 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence 45677788888888888888888888888888 8888888764 5688888888888888888888776522
Q ss_pred cCCHHHHHHHHHHHHHhCCCCH
Q 020109 256 HKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna 277 (331)
+.+.+|+.+|+++++.+|++.
T Consensus 75 -~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 75 -KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp -HHHHHHHHHHCCTTHHHHCCS
T ss_pred -HHHHHHHHHHHHHhccCcccc
Confidence 445677777887777777543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=109.67 Aligned_cols=128 Identities=16% Similarity=-0.049 Sum_probs=110.8
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS----- 240 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~n-------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~----- 240 (331)
.....++|.+|...+++++|+.+|++|++..+.. +.++.++|.++. ..|++++|+++|++|+.+.+.
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~ 219 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDR 219 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 4568899999999999999999999999985542 346678888864 789999999999999987431
Q ss_pred -CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 241 -DGNILSLYADLIWQAHKDASRAESYFDQAVK-----SAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 241 -d~~vL~~lA~ll~~~~Gd~deAieyferALe-----ldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
...++..+|.++.. .|++++|+.+|++|++ .+|..+.++..+|.++..+|++++|...+++
T Consensus 220 ~~~~~~~~lg~~y~~-~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 286 (378)
T 3q15_A 220 FIAISLLNIANSYDR-SGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEE 286 (378)
T ss_dssp HHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34578889999999 9999999999999999 8888899999999999999999999976663
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=99.15 E-value=4.8e-10 Score=82.45 Aligned_cols=80 Identities=19% Similarity=0.187 Sum_probs=74.8
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....++|..+...+++++|+.+|+++++.+|+++.++.++|.++. ..+++++|..+|+++++++|+++.++..+|.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 346789999999999999999999999999999999999999975 6899999999999999999999999999999887
Q ss_pred H
Q 020109 254 Q 254 (331)
Q Consensus 254 ~ 254 (331)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 6
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-10 Score=102.41 Aligned_cols=125 Identities=11% Similarity=0.091 Sum_probs=101.9
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG----DFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G----dyeeAee~~erAL~ldP~d~~vL~ 246 (331)
|+.....++|.+|...+++++|+.+|+++++. +++.+++++|.++. . + ++++|.++|++|+. +.++.++.
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~ 89 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKI-R-NPQQADYPQARQLAEKAVE--AGSKSGEI 89 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHHHHH--TTCHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHHHHH--CCCHHHHH
Confidence 46667788999999999999999999998765 68888899998854 3 6 89999999999954 57888888
Q ss_pred HHHHHHHH---HcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 247 LYADLIWQ---AHKDASRAESYFDQAVKSAP--DDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 247 ~lA~ll~~---~~Gd~deAieyferALeldP--dna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
.+|.++.. ..+++++|+++|++|++..| +++.+++.+|.+|.. .+++++|..-++
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99988763 14789999999999998888 458888999999988 778888886555
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.3e-10 Score=112.43 Aligned_cols=127 Identities=11% Similarity=0.043 Sum_probs=113.1
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
....+++.++...+++++|..+|++|++..|.+...+...+.+.+...|++++|..+|++|++.+|+++.++..|+.+++
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~ 436 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS 436 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 35778999999999999999999999999999888877777665556899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDC----YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna----~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
. .|+.++|..+|++|++..|.++ .+|..+..+....|+.+.+....+
T Consensus 437 ~-~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~ 487 (530)
T 2ooe_A 437 H-LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 487 (530)
T ss_dssp T-TTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred h-CCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9 9999999999999999977554 489999999999999888875443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.14 E-value=3.2e-11 Score=95.23 Aligned_cols=80 Identities=19% Similarity=0.127 Sum_probs=73.5
Q ss_pred cCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 221 RGDFAKAEELCGRAILA---NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 221 ~GdyeeAee~~erAL~l---dP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
.|++++|+.+|++|+++ +|+++.++..+|.+++. .|++++|+.+|+++++++|+++.+++.+|.++..+|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRT-LGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 58899999999999999 69999999999999999 999999999999999999999999999999999999999999
Q ss_pred hhhh
Q 020109 298 QDNE 301 (331)
Q Consensus 298 ~~~e 301 (331)
..++
T Consensus 82 ~~~~ 85 (117)
T 3k9i_A 82 ELLL 85 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8766
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.4e-11 Score=110.99 Aligned_cols=103 Identities=11% Similarity=-0.019 Sum_probs=58.4
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...|+|.+|...+++++|+.+|+++|+++|+++.+++++|.++. ..|++++|+.+|++|++++|+++.++..++.+...
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~-~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~ 310 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKA-ELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQ 310 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHTTC------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999975 68999999999999999999999999999998555
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~ 278 (331)
..++.+++..+|.+++...|++..
T Consensus 311 ~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 311 EKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHhhCCCCCCCC
Confidence 378889999999999999997653
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.7e-10 Score=98.86 Aligned_cols=126 Identities=14% Similarity=0.049 Sum_probs=106.7
Q ss_pred CCCcccccHHHHHHhCC----CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCC--C
Q 020109 171 GGSGFSGSNNNYSNNNH----GSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANP--S 240 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~g----d~ekA~e~yekALeldP~npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP--~ 240 (331)
|+.....|+|.+|.. + ++++|+.+|++++ +++++.+++++|.++. . .+++++|+++|++|+..+| +
T Consensus 48 g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~--~~g~~~a~~~Lg~~y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~ 123 (212)
T 3rjv_A 48 GDGDALALLAQLKIR-NPQQADYPQARQLAEKAV--EAGSKSGEIVLARVLV-NRQAGATDVAHAITLLQDAARDSESDA 123 (212)
T ss_dssp TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH--HTTCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHTSSTTSHH
T ss_pred CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH--HCCCHHHHHHHHHHHH-cCCCCccCHHHHHHHHHHHHHcCCCcc
Confidence 355667889999988 6 8999999999995 5689999999998864 3 6799999999999999988 4
Q ss_pred CHHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-C-----CchHHHhhhh
Q 020109 241 DGNILSLYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA-G-----EDEEEEQDNE 301 (331)
Q Consensus 241 d~~vL~~lA~ll~~~---~Gd~deAieyferALeldPdna~vl~~lA~~L~kl-G-----~~eEa~~~~e 301 (331)
++.++..+|.++..- .+++++|+.+|++|++. |.++.+++.+|.+|..- + ++++|..-++
T Consensus 124 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~ 192 (212)
T 3rjv_A 124 AVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLN 192 (212)
T ss_dssp HHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHH
Confidence 599999999998762 36899999999999999 77888999999999875 3 7888875443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.06 E-value=4e-10 Score=103.67 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=103.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----HH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS--D----GN 243 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~--d----~~ 243 (331)
....+..|...+++++|+.+|++++++.+.. ..++.++|.++ ...|++++|+.+|++|+.+.+. + ..
T Consensus 39 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 117 (307)
T 2ifu_A 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMML-KDLQRMPEAVQYIEKASVMYVENGTPDTAAM 117 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCGGGGHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3344678999999999999999999997643 44677788775 4689999999999999988543 2 45
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDD------CYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdn------a~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
++..+|.++.. |++++|+++|++|+++.|.. ..++.++|.+|..+|++++|...+++
T Consensus 118 ~~~~lg~~~~~--g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 180 (307)
T 2ifu_A 118 ALDRAGKLMEP--LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQK 180 (307)
T ss_dssp HHHHHHHHHTT--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77788888864 99999999999999998743 57889999999999999999976663
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.05 E-value=8.7e-10 Score=100.11 Aligned_cols=122 Identities=11% Similarity=-0.025 Sum_probs=99.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALL------LGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNIL 245 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npea------l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~~vL 245 (331)
+.+..+...+++++|..+|++++...+.++.. +..++.++ ...+++++|..+|++|+.+.+.. ..++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYV-LKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHH-TTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHH-HcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 44677888999999999999999998887763 22355553 35679999999999999975543 3368
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-------CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKS-------APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALel-------dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
..+|.++.. .|++++|+.+|++|++. .+..+.+++++|.+|..+|++++|..-++
T Consensus 159 ~~lg~~y~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~ 220 (293)
T 3u3w_A 159 NAIANIYAE-NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVN 220 (293)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHH-cCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 899999999 99999999999999963 22344688999999999999999997554
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.5e-09 Score=84.63 Aligned_cols=75 Identities=13% Similarity=0.038 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 226 KAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 226 eAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|+++|+++++.+|+++.++..+|.+++. .|++++|+.+|+++++++|++..+++.+|.+|...|++++|...++
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAE-HEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 58899999999999999999999999999 9999999999999999999999999999999999999999997665
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.02 E-value=1.1e-09 Score=91.47 Aligned_cols=116 Identities=10% Similarity=0.028 Sum_probs=95.3
Q ss_pred HhCCCcHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH------hCCCCHHHHHHHHHHHHHHc
Q 020109 184 NNNHGSSSTDAYYEKMIEANP-GNALLLGNYARFLKEVRGDFAKAEELCGRAIL------ANPSDGNILSLYADLIWQAH 256 (331)
Q Consensus 184 ~~~gd~ekA~e~yekALeldP-~npeal~~yA~lLy~~~GdyeeAee~~erAL~------ldP~d~~vL~~lA~ll~~~~ 256 (331)
...|++++|+.+++.... +| ..+.++..+|.++. ..|++++|+.+|++|+. ..|....++..+|.++.. .
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~-~ 79 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYA-FMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERM-A 79 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH-T
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-c
Confidence 356899999996655544 56 67888899998865 68999999999999999 556677889999999999 9
Q ss_pred CCHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 257 KDASRAESYFDQAVKS---APD----DCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 257 Gd~deAieyferALel---dPd----na~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
|++++|+.+|++++++ .++ ...++..+|.++...|++++|...+++
T Consensus 80 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 80 GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 9999999999999999 443 356789999999999999999876653
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=9e-09 Score=104.93 Aligned_cols=117 Identities=12% Similarity=0.020 Sum_probs=103.4
Q ss_pred HHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 183 SNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 183 y~~~gd~-ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd----------yeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.+.+.+ ++|++++.++|+.+|++..+|+.-+.++.. .++ +++|.+++++|++.+|+++.+|...+++
T Consensus 38 ~~~~~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~-l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~ 116 (567)
T 1dce_A 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWL 116 (567)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHh-cccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3444544 789999999999999999999999988764 455 9999999999999999999999999999
Q ss_pred HHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-CchHHHhhhh
Q 020109 252 IWQAHK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG-EDEEEEQDNE 301 (331)
Q Consensus 252 l~~~~G--d~deAieyferALeldPdna~vl~~lA~~L~klG-~~eEa~~~~e 301 (331)
+.. .+ ++++|+++++++++.+|.+..+|...+.++...+ .+++|..-.+
T Consensus 117 l~~-l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 117 LSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHH-cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 999 99 7799999999999999999999999999999999 6666665433
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.99 E-value=2.1e-09 Score=99.42 Aligned_cols=127 Identities=13% Similarity=0.078 Sum_probs=105.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN--A----LLLGNYARFLKEVRGDFAKAEELCGRAILAN--------PS 240 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n--p----eal~~yA~lLy~~~GdyeeAee~~erAL~ld--------P~ 240 (331)
...++|.+|...|++++|..+|++++...|.. + .++.++|.++. ..|++++|+.+|++++.+. |.
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 133 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF-AQGFLQTAWETQEKAFQLINEQHLEQLPM 133 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCTTSTH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHhccccCcH
Confidence 45688899999999999999999999986643 2 23567787754 6899999999999999875 34
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPD-----DCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldPd-----na~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
...++..+|.+++. .|++++|+.++++++++.+. ...++..++.++...|++++|...+++.
T Consensus 134 ~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 134 HEFLVRIRAQLLWA-WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 56677889999999 99999999999999999874 3467889999999999999999776643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.98 E-value=2.1e-10 Score=113.72 Aligned_cols=103 Identities=14% Similarity=0.020 Sum_probs=90.3
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....|+|.+|...+++++|+.+|++|++++|+++.+++++|.++. ..|++++|+++|++|++++|+++.++..++.+
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~-~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM-ALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45668899999999999999999999999999999999999999975 68999999999999999999999999999988
Q ss_pred --HHHHcCCHHHHHHHHH-----------HHHHhCCCC
Q 020109 252 --IWQAHKDASRAESYFD-----------QAVKSAPDD 276 (331)
Q Consensus 252 --l~~~~Gd~deAieyfe-----------rALeldPdn 276 (331)
+.. .+++++|+++++ ++++++|+.
T Consensus 118 ~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~ 154 (477)
T 1wao_1 118 NKIVK-QKAFERAIAGDEHKRSVVDSLDIESMTIEDEY 154 (477)
T ss_dssp HHHHH-HHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred HHHHH-HHHHHHHhccccccchhHhhhhhhhccccccc
Confidence 777 899999999999 888888753
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.96 E-value=1.5e-08 Score=96.23 Aligned_cols=121 Identities=12% Similarity=-0.030 Sum_probs=106.0
Q ss_pred cHHHHHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--
Q 020109 178 SNNNYSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGNILSLYADLI-- 252 (331)
Q Consensus 178 N~A~~y~~~gd~-ekA~e~yekALeldP~npeal~~yA~lLy~~~G--dyeeAee~~erAL~ldP~d~~vL~~lA~ll-- 252 (331)
++.+...+.+.+ ++|+.++.++|.+||++..+|+.-+.++. ..+ ++++|+++++++|.++|++..++...++++
T Consensus 37 ~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~-~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~ 115 (306)
T 3dra_A 37 GLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILK-NLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQ 115 (306)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHH-HcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHH
Confidence 344444555655 79999999999999999999999998875 456 999999999999999999999999999999
Q ss_pred --HHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch--HHHhhh
Q 020109 253 --WQAH---KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE--EEEQDN 300 (331)
Q Consensus 253 --~~~~---Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~e--Ea~~~~ 300 (331)
.. . +++++++++++++++.+|.+..+|...+.++...+.++ ++..-+
T Consensus 116 ~~~~-l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~ 169 (306)
T 3dra_A 116 IMEL-NNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFV 169 (306)
T ss_dssp HHHH-TTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHh-ccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHH
Confidence 65 6 78999999999999999999999999999999999887 665433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-09 Score=102.95 Aligned_cols=94 Identities=13% Similarity=0.001 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAIL----------------ANPSDGNILSLYADLIWQAHKDASRAESYFDQAV 270 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~----------------ldP~d~~vL~~lA~ll~~~~Gd~deAieyferAL 270 (331)
+..+..+|..++ ..++|++|+++|++|++ ++|.++.++..+|.+++. .+++++|+++|++|+
T Consensus 223 a~~~~~~g~~~~-~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~-~g~~~~A~~~~~~al 300 (370)
T 1ihg_A 223 SEDLKNIGNTFF-KSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLK-MSDWQGAVDSCLEAL 300 (370)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHH
Confidence 455778888865 68999999999999999 888999999999999999 999999999999999
Q ss_pred HhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 271 KSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 271 eldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+++|+++.+++.+|.+|..++++++|...++.
T Consensus 301 ~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~ 332 (370)
T 1ihg_A 301 EIDPSNTKALYRRAQGWQGLKEYDQALADLKK 332 (370)
T ss_dssp TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhCchhHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 99999999999999999999999999988763
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=2.7e-09 Score=99.85 Aligned_cols=98 Identities=13% Similarity=-0.022 Sum_probs=87.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCC--C----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCCHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANP--G----NALLLGNYARFLKEVRGDFAKAEELCGRAIL-----ANPSDGN 243 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP--~----npeal~~yA~lLy~~~GdyeeAee~~erAL~-----ldP~d~~ 243 (331)
...|+|.+|...+++++|+.+|++|+++.+ + ...++.++|.++. ..|++++|+++|++|+. .+|..+.
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 262 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPK 262 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHH
Confidence 467899999999999999999999999743 2 2456778898865 68999999999999999 8899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
++..+|.+++. .|++++|+.+|++++++.+
T Consensus 263 ~~~~la~~~~~-~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 263 VLFGLSWTLCK-AGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHHH
Confidence 99999999999 9999999999999999854
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=98.95 E-value=4.2e-09 Score=97.29 Aligned_cols=125 Identities=12% Similarity=0.162 Sum_probs=103.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-----LLGNYARFLKEVRGDFAKAEELCGRAILANPSDG------NI 244 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npe-----al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~------~v 244 (331)
....|..+...+++++|..++++++...|.+.. ++..+|.++. ..|++++|+.++++|+.+.|... .+
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 95 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWS 95 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 345678888999999999999999999886532 4567777754 68999999999999998776432 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSA--------PDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeld--------Pdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+..+|.+++. .|++++|+.+|++++++. |....++..++.+++..|++++|...+++
T Consensus 96 ~~~la~~~~~-~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 160 (373)
T 1hz4_A 96 LIQQSEILFA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS 160 (373)
T ss_dssp HHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 6788999999 999999999999999986 34556788899999999999999977663
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.2e-09 Score=83.08 Aligned_cols=73 Identities=19% Similarity=0.055 Sum_probs=67.3
Q ss_pred CCCCHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 203 NPGNALLLGNYARFLKEVRGD---FAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~Gd---yeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
+|+|+.++..||.+++. .++ .++|..++++|+++||+++.++..+|..+++ .|+|++|+.+|+++++.+|.++
T Consensus 2 ~p~~~~~~~~~a~al~~-~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~-~g~y~~Ai~~w~~~l~~~p~~~ 77 (93)
T 3bee_A 2 NAVTATQLAAKATTLYY-LHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFI-SFRFQEAIDTWVLLLDSNDPNL 77 (93)
T ss_dssp CCCCHHHHHHHHHHHHH-TTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTCCCTTC
T ss_pred CCCCHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCc
Confidence 79999999999999874 444 6999999999999999999999999999999 9999999999999999999843
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=4.3e-09 Score=107.28 Aligned_cols=113 Identities=12% Similarity=0.069 Sum_probs=103.0
Q ss_pred cccHHHHHHhCCC----------cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHhCCCCHH
Q 020109 176 SGSNNNYSNNNHG----------SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG--DFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 176 ~~N~A~~y~~~gd----------~ekA~e~yekALeldP~npeal~~yA~lLy~~~G--dyeeAee~~erAL~ldP~d~~ 243 (331)
-.+.+.++...++ +++|+++++++|+.+|++..+|+.-+.++. ..+ ++++|.+++++++++||.|..
T Consensus 66 W~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~-~l~~~~~~~el~~~~k~l~~d~~N~~ 144 (567)
T 1dce_A 66 WNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS-RLPEPNWARELELCARFLEADERNFH 144 (567)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TCSSCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcccccHHHHHHHHHHHHhhcccccc
Confidence 3445566666666 899999999999999999999999998875 578 779999999999999999999
Q ss_pred HHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 244 ILSLYADLIWQAHK-DASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 244 vL~~lA~ll~~~~G-d~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
+|...++++.. .+ .+++|+++++++++.+|.+..+|..++.++..+
T Consensus 145 aW~~R~~~l~~-l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l 191 (567)
T 1dce_A 145 CWDYRRFVAAQ-AAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 191 (567)
T ss_dssp HHHHHHHHHHH-TCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence 99999999999 88 999999999999999999999999999999986
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.1e-09 Score=103.61 Aligned_cols=126 Identities=10% Similarity=-0.145 Sum_probs=108.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD--GNILSLYADLI 252 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d--~~vL~~lA~ll 252 (331)
+.-.||..|...|+|++|.+.|+.++..+|++. ..+.+|.+++ ..++|++|+.+|++++...+.. ..+++.+|.++
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 445689999999999999999999999999988 8888998865 6899999999999887753221 34789999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 253 WQAHKDASRAESYFDQAVKSA--PD-DCYVLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeld--Pd-na~vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
.. .|++++|+.+|++++... |. ...+++.+|.++..+|+.++|...++..
T Consensus 182 ~~-LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 182 AN-LALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HH-TTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HH-CCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99 999999999999999654 54 6679999999999999999999877643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-08 Score=76.09 Aligned_cols=79 Identities=15% Similarity=0.109 Sum_probs=67.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHH
Q 020109 211 GNYARFLKEVRGDFAKAEELCGRAILANPSDGN-ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL--ASYAKFL 287 (331)
Q Consensus 211 ~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl--~~lA~~L 287 (331)
+..|..+. ..+++++|+++|+++++.+|+++. ++..+|.+++. .|++++|+++|+++++++|++..++ ..++.++
T Consensus 4 ~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~a~ 81 (99)
T 2kc7_A 4 LKTIKELI-NQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRK-LGDWQKALNNYQSAIELNPDSPALQARKMVMDIL 81 (99)
T ss_dssp HHHHHHHH-HHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 34566654 679999999999999999999999 99999999999 9999999999999999999999887 4444444
Q ss_pred HHcC
Q 020109 288 WDAG 291 (331)
Q Consensus 288 ~klG 291 (331)
....
T Consensus 82 ~~~~ 85 (99)
T 2kc7_A 82 NFYN 85 (99)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 4433
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.89 E-value=7.6e-09 Score=81.43 Aligned_cols=99 Identities=10% Similarity=0.034 Sum_probs=84.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DG 242 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~------d~ 242 (331)
...++|.+|...+++++|+.+|++++...+.. ..++.++|.++. ..+++++|.+++++++.+.+. .+
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 129 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYT-LLQDYEKAIDYHLKHLAIAQELKDRIGEG 129 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence 46789999999999999999999999986543 556778888865 689999999999999977432 25
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPD 275 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPd 275 (331)
.++..+|.+++. .|++++|++++++++++...
T Consensus 130 ~~~~~la~~~~~-~g~~~~A~~~~~~a~~~~~~ 161 (164)
T 3ro3_A 130 RACWSLGNAYTA-LGNHDQAMHFAEKHLEISRE 161 (164)
T ss_dssp HHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH-ccCHHHHHHHHHHHHHHHHH
Confidence 678889999999 99999999999999988553
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.86 E-value=4e-08 Score=93.33 Aligned_cols=109 Identities=10% Similarity=0.066 Sum_probs=100.8
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC------
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFA--KAEELCGRAILANPSDGNILSLYADLIWQAHKD------ 258 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gdye--eAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd------ 258 (331)
+++++++.++.++|+.+|+|..+|..-+.++. ..+.++ ++.++++++|+.+|.|..++...++++.. .++
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~-~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~-l~~~~~~~~ 201 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVD-TFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS-KKHLATDNT 201 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS-SGGGCCHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh-ccccchhhh
Confidence 67899999999999999999999999988875 578888 99999999999999999999999999988 887
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
+++++++++++++.+|.|..+|..+..++...|+..++.
T Consensus 202 ~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~ 240 (306)
T 3dra_A 202 IDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQL 240 (306)
T ss_dssp HHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGG
T ss_pred HHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHH
Confidence 999999999999999999999999999999999865544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.4e-08 Score=94.57 Aligned_cols=121 Identities=11% Similarity=0.043 Sum_probs=69.0
Q ss_pred CCcccccHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHhCCCCH
Q 020109 172 GSGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR-----GDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 172 ~~~~~~N~A~~y~~----~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~-----GdyeeAee~~erAL~ldP~d~ 242 (331)
+.....++|.+|.. .+++++|+.+|+++++. +++.+++.+|.++. .. +++++|..+|++|++. .++
T Consensus 254 ~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~~~~g~~~~~~~A~~~~~~a~~~--~~~ 328 (490)
T 2xm6_A 254 NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ--GNSDGQYYLAHLYD-KGAEGVAKNREQAISWYTKSAEQ--GDA 328 (490)
T ss_dssp CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT--TCHHHHHHHHHHHH-HCBTTBCCCHHHHHHHHHHHHHT--TCH
T ss_pred CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH-cCCCCCcCCHHHHHHHHHHHHhc--CCH
Confidence 34445556666665 56666666666666543 45556666665543 33 5666666666666554 345
Q ss_pred HHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhh
Q 020109 243 NILSLYADLIWQAHK---DASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDN 300 (331)
Q Consensus 243 ~vL~~lA~ll~~~~G---d~deAieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~ 300 (331)
.++..+|.++.. .| ++++|+++|++|++. .++.+++.+|.+|.. .+++++|..-+
T Consensus 329 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~ 390 (490)
T 2xm6_A 329 TAQANLGAIYFR-LGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWM 390 (490)
T ss_dssp HHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 555566666555 44 556666666666655 455566666666666 55565555443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=4.5e-09 Score=91.81 Aligned_cols=81 Identities=12% Similarity=0.064 Sum_probs=73.3
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA----------SRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~----------deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
..+.+++|.+.|++|++++|+++.++..+|.++.. .+++ ++|+..|++||+++|++..+|+++|.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~-l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLE-LSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 35678999999999999999999999999999988 7765 599999999999999999999999999998
Q ss_pred cC-----------CchHHHhhhh
Q 020109 290 AG-----------EDEEEEQDNE 301 (331)
Q Consensus 290 lG-----------~~eEa~~~~e 301 (331)
+| ++++|+.-++
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~ 115 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQ 115 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHH
Confidence 85 7888886554
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.3e-08 Score=97.71 Aligned_cols=122 Identities=15% Similarity=0.099 Sum_probs=97.4
Q ss_pred CCcccccHHHHHHhCC---CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHhCCCCHHH
Q 020109 172 GSGFSGSNNNYSNNNH---GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVR----GDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~g---d~ekA~e~yekALeldP~npeal~~yA~lLy~~~----GdyeeAee~~erAL~ldP~d~~v 244 (331)
++....++|.+|...+ ++++|+.+|+++++.+|.++..++++|.++. .. +++++|.++|++|. |.++.+
T Consensus 175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa---~g~~~a 250 (452)
T 3e4b_A 175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQALLEKIA---PGYPAS 250 (452)
T ss_dssp CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHG---GGSTHH
T ss_pred CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 4447788999998888 8899999999999999988888888888753 22 58888888888887 888888
Q ss_pred HHHHHHHHH---HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----CchHHHhhhh
Q 020109 245 LSLYADLIW---QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG-----EDEEEEQDNE 301 (331)
Q Consensus 245 L~~lA~ll~---~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG-----~~eEa~~~~e 301 (331)
+..+|.+++ . .+++++|+.+|++|++.. ++.+++.+|.+|. .| ++++|..-++
T Consensus 251 ~~~Lg~~~~~~~~-~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 251 WVSLAQLLYDFPE-LGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHHHHHSGG-GCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-CCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 888888743 4 788888888888888654 7888888888887 45 7777776554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.9e-08 Score=95.58 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=101.2
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-C-C
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIWQAH-K-D 258 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G-dyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~-G-d 258 (331)
.+.+....++|+.++.++|.+||++..+|+.-+.++. ..+ ++++++++++++|..+|++..++...++++.. . + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~-~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~-l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLT-SLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDR-ISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH-HCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-hcCCC
Confidence 3444455689999999999999999999999998875 456 69999999999999999999999999999988 6 7 9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 259 ASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 259 ~deAieyferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
+++++++++++++.+|.|..+|...+.++...+.++
T Consensus 141 ~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~ 176 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLG 176 (349)
T ss_dssp CHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999999998876
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-08 Score=97.03 Aligned_cols=115 Identities=17% Similarity=0.141 Sum_probs=97.6
Q ss_pred ccHHHHHHhC----CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 177 GSNNNYSNNN----HGSSSTDAYYEKMIEANPGNALLLGNYARFLK--EVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 177 ~N~A~~y~~~----gd~ekA~e~yekALeldP~npeal~~yA~lLy--~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
.|+|.+|... +++++|+.+|+++. |+++.+++++|.+++ ...+++++|.++|++|+.. .++.++..+|.
T Consensus 217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~ 291 (452)
T 3e4b_A 217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGK 291 (452)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHH
Confidence 7888888765 78899999999988 899999999998854 4578999999999999865 48999999999
Q ss_pred HHHHHcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 251 LIWQAHK-----DASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 251 ll~~~~G-----d~deAieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
++.. | ++++|+.+|++|+ +.++.+++++|.+|.. ..++++|..-++
T Consensus 292 ~y~~--G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~ 346 (452)
T 3e4b_A 292 LYYE--GKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLL 346 (452)
T ss_dssp HHHH--CSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHH
T ss_pred HHHc--CCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 8875 5 9999999999999 8899999999988887 337777776554
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.1e-07 Score=92.40 Aligned_cols=123 Identities=11% Similarity=0.029 Sum_probs=72.9
Q ss_pred CCcccccHHHHHHh----CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHH
Q 020109 172 GSGFSGSNNNYSNN----NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 172 ~~~~~~N~A~~y~~----~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP~d~~ 243 (331)
+.....++|.+|.. .+++++|+.+|+++++. +++.+++.+|.++. . .+++++|+++|++|+.. +++.
T Consensus 74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~-~g~g~~~~~~~A~~~~~~a~~~--~~~~ 148 (490)
T 2xm6_A 74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQNLGVMYH-EGNGVKVDKAESVKWFRLAAEQ--GRDS 148 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HTSSSCCCHHHHHHHHHHHHHT--TCHH
T ss_pred CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHHHC--CCHH
Confidence 34455566666666 66666666666666553 45666666666543 3 45666666666666554 3566
Q ss_pred HHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 244 ILSLYADLIWQ---AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 244 vL~~lA~ll~~---~~Gd~deAieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
++..+|.+++. ..+++++|+++|+++++. .++.+++.+|.+|.. .+++++|..-++
T Consensus 149 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~ 211 (490)
T 2xm6_A 149 GQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQWYR 211 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence 66666666553 134666666666666654 356666666666666 556666654443
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.5e-08 Score=102.07 Aligned_cols=123 Identities=10% Similarity=0.030 Sum_probs=100.4
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH-
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGNI- 244 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALel-----dP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~l-----dP~d~~v- 244 (331)
.+.-+..+|+|++|+..|+++|++ .|+++. .+.++|.++ ..+|+|++|+.++++||.+ .|++|.+
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y-~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVL-SYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 344577899999999999999996 455554 567788885 4789999999999999965 5777765
Q ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCchHHHhhhhhc
Q 020109 245 --LSLYADLIWQAHKDASRAESYFDQAVKS-----APDDCY---VLASYAKFLWDAGEDEEEEQDNEEG 303 (331)
Q Consensus 245 --L~~lA~ll~~~~Gd~deAieyferALel-----dPdna~---vl~~lA~~L~klG~~eEa~~~~e~~ 303 (331)
+..+|.+++. +|++++|+.+|++|+++ .|+++. +...++.++..++.+++|+..++..
T Consensus 394 ~~l~nLa~~~~~-~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~ 461 (490)
T 3n71_A 394 MAVMRAGLTNWH-AGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKM 461 (490)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678999999 99999999999999986 566664 4568889999999999999777643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.76 E-value=2.5e-08 Score=77.18 Aligned_cols=64 Identities=20% Similarity=0.229 Sum_probs=59.1
Q ss_pred hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 237 ANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 237 ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.+|+++.++..+|.+++. .|++++|+.+|+++++++|++..+|+.+|.+|...|++++|...++
T Consensus 2 ~~p~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 65 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLK-HDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYA 65 (100)
T ss_dssp ---CCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 589999999999999999 9999999999999999999999999999999999999999997665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.5e-07 Score=89.11 Aligned_cols=115 Identities=12% Similarity=0.015 Sum_probs=95.0
Q ss_pred HHHhCCCc-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 182 YSNNNHGS-SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD----------FAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 182 ~y~~~gd~-ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd----------yeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
...+.+.+ ++|+.++.++|.+||++..+|+.-+.++.. .+. ++++..++++++..+|.++.++...++
T Consensus 38 ~~~~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~-l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~w 116 (331)
T 3dss_A 38 QKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQH-LETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCW 116 (331)
T ss_dssp HHHHTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-HHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHH-hcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34455666 589999999999999999998887777643 233 688999999999999999999999999
Q ss_pred HHHHHcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc-hHHHh
Q 020109 251 LIWQAHK--DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED-EEEEQ 298 (331)
Q Consensus 251 ll~~~~G--d~deAieyferALeldPdna~vl~~lA~~L~klG~~-eEa~~ 298 (331)
++.. .+ ++++++++++++++.+|.|..+|...+.++...+.. +++..
T Consensus 117 lL~~-l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~ 166 (331)
T 3dss_A 117 LLSR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELA 166 (331)
T ss_dssp HHHH-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHhc-cCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 9888 87 489999999999999999999999999999999884 55553
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=6.9e-08 Score=93.83 Aligned_cols=116 Identities=6% Similarity=-0.045 Sum_probs=104.9
Q ss_pred cccHHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG-DFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 176 ~~N~A~~y~~~g-d~ekA~e~yekALeldP~npeal~~yA~lLy~~~G-dyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
-.+.+.++...+ .+++++.++.++|..+|++..+|..-+.++....+ ++++++++++++++++|.|..++...++++.
T Consensus 91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~ 170 (349)
T 3q7a_A 91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYS 170 (349)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 344566777777 59999999999999999999999999988765436 8999999999999999999999999999998
Q ss_pred HHcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 254 QAHKDAS--------RAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 254 ~~~Gd~d--------eAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
. .+.++ +++++++++++.+|.|..+|.+++.++...++
T Consensus 171 ~-l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 171 H-FSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp H-HHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTT
T ss_pred H-hccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccc
Confidence 8 77777 99999999999999999999999999999986
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.5e-07 Score=90.76 Aligned_cols=110 Identities=12% Similarity=-0.069 Sum_probs=69.7
Q ss_pred HHHHHHhCC--CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 179 NNNYSNNNH--GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGD-FAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 179 ~A~~y~~~g--d~ekA~e~yekALeldP~npeal~~yA~lLy~~~Gd-yeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
.+.++...+ .+++++.++.++|+.||.|..+|..-+.++. ..+. ++++.++++++|..+|.|..++...+.++..
T Consensus 114 R~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~-~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~- 191 (331)
T 3dss_A 114 RCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAA-QAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ- 191 (331)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-
T ss_pred HHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-
Confidence 334444444 3567777777777777777777766665553 3455 4667777777777777777777776666665
Q ss_pred c--------------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 256 H--------------KDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 256 ~--------------Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
. +.++++++++++++..+|+|..+|..+..++...
T Consensus 192 l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~ 240 (331)
T 3dss_A 192 LHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAG 240 (331)
T ss_dssp HSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSS
T ss_pred hhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 4 3466777777777777777777765554444443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=1.9e-07 Score=81.09 Aligned_cols=99 Identities=12% Similarity=0.024 Sum_probs=86.8
Q ss_pred CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHH
Q 020109 188 GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILAN-P-SDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 188 d~ekA~e~yekALeldP~npeal~~yA~lLy~~~G---dyeeAee~~erAL~ld-P-~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
....+...|++.+..++.+....++||.++.. .. +..+++.+++.++..+ | ++.++++++|..+++ .++|++|
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~-S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~k-l~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-SKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHT-CSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH-TSCHHHH
T ss_pred HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHH-ccCHHHH
Confidence 45688899999999999999999999998763 45 6779999999999999 7 679999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~ 288 (331)
..|++++++++|++..+..-.-.+-.
T Consensus 91 ~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 91 LKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999987766544443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.3e-07 Score=74.86 Aligned_cols=106 Identities=16% Similarity=0.108 Sum_probs=82.1
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---AHKDASRAE 263 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~---~~Gd~deAi 263 (331)
+++++|+.+|+++.+.... .+. +|.++. .....++|.++|++|... .++.++..+|.++.. ..+++++|+
T Consensus 9 ~d~~~A~~~~~~aa~~g~~--~a~--lg~~y~-~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEM--FGC--LSLVSN-SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCT--THH--HHHHTC-TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCCH--hhh--HHHHHH-cCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 5778888888888887643 333 776643 456778888888888877 688888888888775 147888899
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhhh
Q 020109 264 SYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDNE 301 (331)
Q Consensus 264 eyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~e 301 (331)
++|++|.+. .++.++++++.+|.. ..++++|..-++
T Consensus 82 ~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 82 QYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 999888887 678888888888888 788888875444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=9e-08 Score=91.43 Aligned_cols=89 Identities=13% Similarity=0.179 Sum_probs=79.2
Q ss_pred CCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHHcCCH
Q 020109 187 HGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSD-GNILSLYADLIWQAHKDA 259 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP~d-~~vL~~lA~ll~~~~Gd~ 259 (331)
.....|+..+++||++||+ +..++..+|.+++.+ .|+.++|+++|++||+++|+. +.+++.||..+....+++
T Consensus 177 ~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 177 DTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 3568999999999999999 777999999886532 599999999999999999975 999999999987724999
Q ss_pred HHHHHHHHHHHHhCCC
Q 020109 260 SRAESYFDQAVKSAPD 275 (331)
Q Consensus 260 deAieyferALeldPd 275 (331)
++|..++++|++.+|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 9999999999999886
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=4e-07 Score=75.01 Aligned_cols=105 Identities=14% Similarity=0.040 Sum_probs=87.7
Q ss_pred CCCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 171 GGSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV----RGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~----~GdyeeAee~~erAL~ldP~d~~vL~ 246 (331)
|+.... +|.+|.....+++|+.+|++|.+. +++.+++++|.++. . .+|+++|.++|++|.+. .++.+..
T Consensus 25 g~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~ 97 (138)
T 1klx_A 25 NEMFGC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYE-NGKYVKKDLRKAAQYYSKACGL--NDQDGCL 97 (138)
T ss_dssp TCTTHH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred CCHhhh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHH-cCCCCCccHHHHHHHHHHHHcC--CCHHHHH
Confidence 344444 899999999999999999999987 78999999999964 4 68999999999999987 6899999
Q ss_pred HHHHHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 247 LYADLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYA 284 (331)
Q Consensus 247 ~lA~ll~~~---~Gd~deAieyferALeldPdna~vl~~lA 284 (331)
.+|.++..- .+++++|+++|++|.+.. +..+...++
T Consensus 98 ~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l~ 136 (138)
T 1klx_A 98 ILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGILN 136 (138)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC-
T ss_pred HHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHh
Confidence 999998761 489999999999999984 444444443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.59 E-value=2.3e-07 Score=88.89 Aligned_cols=122 Identities=10% Similarity=-0.022 Sum_probs=102.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CHH-HHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANP--GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-----DGN-ILSL 247 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP--~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-----d~~-vL~~ 247 (331)
...+|..|...|++++|+..+.+.|..+| ++.+++...+.++ ...|+.+.|.+.++++.+.+|+ +.. +...
T Consensus 103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~-L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La 181 (310)
T 3mv2_B 103 LYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVA-LLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA 181 (310)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHH-HHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence 45788999999999999999999999997 7888888888886 4789999999999999999993 333 3333
Q ss_pred HHHHHHHHcC--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 248 YADLIWQAHK--DASRAESYFDQAVKSAPD--DCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 248 lA~ll~~~~G--d~deAieyferALeldPd--na~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
-||+.+. .| ++++|..+|+++.+..|+ ....+++ +++.+|++++|+.+++.
T Consensus 182 ea~v~l~-~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 182 ESYIKFA-TNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHHHH-HTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHH
T ss_pred HHHHHHH-hCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHH
Confidence 4666776 66 999999999999998887 3445555 89999999999998863
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.58 E-value=7.1e-07 Score=70.32 Aligned_cols=77 Identities=12% Similarity=0.082 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILAN-------PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ld-------P~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
++.-.+.+|.+++ ..++|..|...|++|++.. +..+.++..+|.++++ .|++++|+.++++|++++|++..
T Consensus 4 sa~dc~~lG~~~~-~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~-~g~~~~A~~~~~~al~l~P~~~~ 81 (104)
T 2v5f_A 4 TAEDCFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQR 81 (104)
T ss_dssp CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHH
T ss_pred CHHHHHHHHHHHH-HccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhcCCCCHH
Confidence 3455667777766 5788888888888888753 3467778888888888 88888888888888888888888
Q ss_pred HHHHHH
Q 020109 279 VLASYA 284 (331)
Q Consensus 279 vl~~lA 284 (331)
++.++.
T Consensus 82 ~~~n~~ 87 (104)
T 2v5f_A 82 ANGNLK 87 (104)
T ss_dssp HHHHHH
T ss_pred HHhhHH
Confidence 877776
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.7e-07 Score=87.25 Aligned_cols=114 Identities=10% Similarity=-0.137 Sum_probs=95.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhC-CCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEAN-PGN-ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PS-DGNILSLYA 249 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeld-P~n-peal~~yA~lLy~~~GdyeeAee~~erAL~ld--P~-d~~vL~~lA 249 (331)
..+++|..+.+.+++++|+.+|++++... |.. ..+++++|.++. ..|++++|+.+|++++... |. .+++++.+|
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~-~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~g 215 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAA-NLALFTEAERRLTEANDSPAGEACARAIAWYLA 215 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHH-HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHH
Confidence 77899999999999999999999887653 221 347888898865 7899999999999999654 55 677999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
.++.. +|+.++|...|++++..+|+ ..++..+...-+...
T Consensus 216 laL~~-lGr~deA~~~l~~a~a~~P~-~~~~~aL~~~~~~~~ 255 (282)
T 4f3v_A 216 MARRS-QGNESAAVALLEWLQTTHPE-PKVAAALKDPSYRLK 255 (282)
T ss_dssp HHHHH-HTCHHHHHHHHHHHHHHSCC-HHHHHHHHCTTCCCC
T ss_pred HHHHH-cCCHHHHHHHHHHHHhcCCc-HHHHHHHhCCCCCCC
Confidence 99999 99999999999999999999 887777755544444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-06 Score=85.58 Aligned_cols=124 Identities=7% Similarity=-0.066 Sum_probs=94.1
Q ss_pred cccHHHHHHhC---CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--cC--CHH--HH-HHHHH--HHHHhCCCCHH
Q 020109 176 SGSNNNYSNNN---HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV--RG--DFA--KA-EELCG--RAILANPSDGN 243 (331)
Q Consensus 176 ~~N~A~~y~~~---gd~ekA~e~yekALeldP~npeal~~yA~lLy~~--~G--dye--eA-ee~~e--rAL~ldP~d~~ 243 (331)
.+-.|..+..+ .++.+|+.+|++||++||+++.++..++.++... .+ ... .+ ...++ .++..+|.++.
T Consensus 199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~ 278 (372)
T 3ly7_A 199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI 278 (372)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence 44444554443 3458999999999999999999998777654211 11 111 11 11222 23467899999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++..+|..++. .|++++|+.++++|++++| +...|..+|.++.-.|++++|...++
T Consensus 279 ~~~alal~~l~-~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~ 334 (372)
T 3ly7_A 279 IYQIKAVSALV-KGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYL 334 (372)
T ss_dssp HHHHHHHHHHH-HTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999988 8999999999999999997 57788899999999999999997775
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=9.3e-07 Score=87.71 Aligned_cols=93 Identities=14% Similarity=0.066 Sum_probs=75.9
Q ss_pred CCCcHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHH
Q 020109 186 NHGSSSTDAYYEKMIEA-----NPGNALL---LGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGNI---LSLYA 249 (331)
Q Consensus 186 ~gd~ekA~e~yekALel-----dP~npea---l~~yA~lLy~~~GdyeeAee~~erAL~l-----dP~d~~v---L~~lA 249 (331)
.|+|++|+..|+++|++ .|+++.. +.++|.++ ..+|+|++|+.+++++|++ .|++|.+ +.++|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y-~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVC-LYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHH-HhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46789999999999995 5666654 56778885 4789999999999999954 5666665 66889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKS-----APDDCYVL 280 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALel-----dPdna~vl 280 (331)
.+++. +|++++|+.+|+||+++ .|+++.+.
T Consensus 390 ~~~~~-qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 390 RLYMG-LENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HHHHh-ccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 99999 99999999999999987 46666554
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.6e-07 Score=69.68 Aligned_cols=73 Identities=12% Similarity=-0.010 Sum_probs=63.7
Q ss_pred CCCcccccHHHHHHhCCC---cHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 171 GGSGFSGSNNNYSNNNHG---SSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNI 244 (331)
Q Consensus 171 ~~~~~~~N~A~~y~~~gd---~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~v 244 (331)
.|+..+..||..+.-.++ .++|..++++||++||+++.++..+|.+++ ..|+|++|..+|++++..+|.++..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~-~~g~y~~Ai~~w~~~l~~~p~~~~~ 79 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHF-ISFRFQEAIDTWVLLLDSNDPNLDR 79 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTCCCTTCCH
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCccH
Confidence 456677788888865554 699999999999999999999999999976 6899999999999999999996553
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-06 Score=67.70 Aligned_cols=74 Identities=12% Similarity=0.066 Sum_probs=65.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEAN-------PGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeld-------P~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
-..+|.+++.+++|..|+..|++|++.. +..+.++..||.+++ ..|++++|..++++|++++|+++.++.++
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~-~~g~~~~A~~~~~~al~l~P~~~~~~~n~ 86 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNL 86 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHhhH
Confidence 4578999999999999999999999974 345788899999976 68999999999999999999999998877
Q ss_pred HH
Q 020109 249 AD 250 (331)
Q Consensus 249 A~ 250 (331)
+.
T Consensus 87 ~~ 88 (104)
T 2v5f_A 87 KY 88 (104)
T ss_dssp HH
T ss_pred HH
Confidence 73
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=2e-06 Score=82.11 Aligned_cols=98 Identities=12% Similarity=0.026 Sum_probs=81.0
Q ss_pred CCCCHHHHHHHHHHHHHH----cC------CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHc-----CCHHHHHHH
Q 020109 203 NPGNALLLGNYARFLKEV----RG------DFAKAEELCGRAILANPS--DGNILSLYADLIWQAH-----KDASRAESY 265 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~----~G------dyeeAee~~erAL~ldP~--d~~vL~~lA~ll~~~~-----Gd~deAiey 265 (331)
+|+++++++..|....-. .+ ...+|...+++||++||+ +..++..+|.+|.. . |+.++|.++
T Consensus 148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~-vPp~~gGd~ekA~~~ 226 (301)
T 3u64_A 148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAA-APESFGGGMEKAHTA 226 (301)
T ss_dssp CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH-SCTTTTCCHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHh-CCCccCCCHHHHHHH
Confidence 455567666666553211 12 457899999999999999 77799999999887 6 999999999
Q ss_pred HHHHHHhCCCC-HHHHHHHHHHHHHc-CCchHHHhhhh
Q 020109 266 FDQAVKSAPDD-CYVLASYAKFLWDA-GEDEEEEQDNE 301 (331)
Q Consensus 266 ferALeldPdn-a~vl~~lA~~L~kl-G~~eEa~~~~e 301 (331)
|+||++++|+. ..+++.||.+|... +++++++..++
T Consensus 227 ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~ 264 (301)
T 3u64_A 227 FEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALD 264 (301)
T ss_dssp HHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 99999999975 99999999999985 89999987776
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.34 E-value=2.8e-06 Score=88.80 Aligned_cols=110 Identities=8% Similarity=-0.018 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 190 SSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAE-ELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQ 268 (331)
Q Consensus 190 ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAe-e~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyfer 268 (331)
++....|++||...|.++.+|..||.++. ..++.++|. +.|++|+...|.+..++..||.+... .+++++|.+.|++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~-~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~-~~~~e~aR~iyek 403 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPEIWFNMANYQG-EKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYEL-NTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHH
Confidence 45678999999999999999999999975 578888996 99999999999999999999999999 9999999999999
Q ss_pred HHHh-----------CCC-----------CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 269 AVKS-----------APD-----------DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 269 ALel-----------dPd-----------na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++. .|. .+.+|..++.+..+.++.+.|...++
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~ 458 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFG 458 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9986 253 45689999999999999988887765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.34 E-value=1.5e-06 Score=90.81 Aligned_cols=125 Identities=12% Similarity=0.076 Sum_probs=108.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA-NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel-dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
--.|+++....++.+.|...|.+|++. .+....++..+|.+-+...+++++|..+|+++++..|+++.++..|+.+.+.
T Consensus 437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~ 516 (679)
T 4e6h_A 437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY 516 (679)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence 345677777888999999999999998 5556777777787765444669999999999999999999999999999998
Q ss_pred HcCCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAP---DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldP---dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++.++|..+|++|++..| ....+|..+..+....|+.+.+....+
T Consensus 517 -~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 517 -VNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp -HTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999998 466899999999999999988887665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.34 E-value=1e-06 Score=82.37 Aligned_cols=123 Identities=7% Similarity=0.021 Sum_probs=89.1
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-----------------LLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npe-----------------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
.-|+-+.+.|+|++|+..|.+++..+|.... ++..+|.++. ..|++++|.+++.+++.+.+.
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~-~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYV-TMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHH
Confidence 3466677778888888888888888887532 4667787754 678888888888888876655
Q ss_pred CHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 241 DGN------ILSLYADLIWQAHKDASRAESYFDQAVKSAP------DDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 241 d~~------vL~~lA~ll~~~~Gd~deAieyferALeldP------dna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
... ++..++.++.. .+++++|+.++++++...+ ..+.++..+|.+|...|++++|...+++
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQV-PDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSC-CSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 332 33445555555 7888888888888887643 3356777888888888888888866553
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.4e-06 Score=81.48 Aligned_cols=124 Identities=11% Similarity=0.041 Sum_probs=101.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL------LLGNYARFLKEVRGDFAKAEELCGRAILANPS------DGN 243 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npe------al~~yA~lLy~~~GdyeeAee~~erAL~ldP~------d~~ 243 (331)
+.++|..|...|++++|..+|++++...+.... +...++.+ +...+++++|.+++++++...+. -..
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKF-EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHH-CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 578999999999999999999999998666433 23344444 34578999999999999876443 356
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKS------APDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALel------dPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++..+|.++.. .|++++|+.++++++.. .+....++...+.+|..++++++|...++
T Consensus 137 ~~~~la~~~~~-~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 199 (434)
T 4b4t_Q 137 LSIKLATLHYQ-KKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLT 199 (434)
T ss_dssp HHHHHHHHHHH-HTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHH-ccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 78899999999 99999999999999887 34456789999999999999999987654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1.7e-06 Score=85.45 Aligned_cols=98 Identities=11% Similarity=-0.051 Sum_probs=79.3
Q ss_pred HHHhCCCcHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---H
Q 020109 182 YSNNNHGSSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAILA-----NPSDGNI---L 245 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALel-----dP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~l-----dP~d~~v---L 245 (331)
-+..+++|++|+..|+++|++ .|+++. .+.++|.++ ..+|+|++|+.+++++|.+ .|++|.+ +
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y-~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDAC-INLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHH-HhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 355678999999999999985 566655 456777775 4689999999999999954 5777775 6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHH
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKS-----APDDCYVLA 281 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALel-----dPdna~vl~ 281 (331)
..+|.+++. +|++++|+.+|++|+++ -|+++.+..
T Consensus 375 ~nLa~~~~~-~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 375 MKVGKLQLH-QGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 678999999 99999999999999987 567775543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.26 E-value=3.6e-06 Score=80.57 Aligned_cols=123 Identities=15% Similarity=0.139 Sum_probs=100.4
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP--SDGNILSLYADL 251 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP--~d~~vL~~lA~l 251 (331)
..+.-|+.|+.. .|+.+|++.+...+.++..+..+|.++. ..|++++|++++.+.|..+| ++.+++...+.+
T Consensus 72 ~a~~~la~~~~~-----~a~~~l~~l~~~~~~~~~~~~~la~i~~-~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi 145 (310)
T 3mv2_B 72 KVLDLYVQFLDT-----KNIEELENLLKDKQNSPYELYLLATAQA-ILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEV 145 (310)
T ss_dssp HHHHHHHHHHTT-----TCCHHHHHTTTTSCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc-----cHHHHHHHHHhcCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHH
Confidence 356677777752 2899999998887677777777888765 68999999999999999997 899999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcC--CchHHHhhhhhc
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPD------DCYVLASYAKFLWDAG--EDEEEEQDNEEG 303 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPd------na~vl~~lA~~L~klG--~~eEa~~~~e~~ 303 (331)
+.+ +|+.++|.++++++.+.+|+ ...++..-+++....| ++++|...++|+
T Consensus 146 ~L~-~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El 204 (310)
T 3mv2_B 146 ALL-NNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL 204 (310)
T ss_dssp HHH-TTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred HHH-CCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 999 99999999999999999993 3344444465576666 899999888854
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.23 E-value=2.7e-06 Score=85.59 Aligned_cols=97 Identities=10% Similarity=0.060 Sum_probs=80.8
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHH-----hCCCC
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEA-----NPGNAL---LLGNYARFLKEVRGDFAKAEELCGRAIL-----ANPSD 241 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALel-----dP~npe---al~~yA~lLy~~~GdyeeAee~~erAL~-----ldP~d 241 (331)
.+.|+|..|..+|+|++|+.+|+++|++ -|++|. .++++|.++. .+|+|++|+.+|++|+. +.|++
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~-~~G~~~eA~~~~~~Al~i~~~~lG~~H 431 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNW-HAGHIEVGHGMICKAYAILLVTHGPSH 431 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHTCTTS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 3789999999999999999999999986 455554 5678898865 78999999999999985 57888
Q ss_pred HHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHhC
Q 020109 242 GNILS---LYADLIWQAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 242 ~~vL~---~lA~ll~~~~Gd~deAieyferALeld 273 (331)
|.+.. +++.++.. ++.+++|+..|.+|.+..
T Consensus 432 p~~~~~~~~l~~~~~e-~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 432 PITKDLEAMRMQTEME-LRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 88765 56666677 899999999999886654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.12 E-value=4.1e-05 Score=76.37 Aligned_cols=127 Identities=13% Similarity=0.089 Sum_probs=100.9
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHH-----------------------------------
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFL----------------------------------- 217 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lL----------------------------------- 217 (331)
..+-.+|+.++...++.++|...|++|+.. |.+..++..|+.+.
T Consensus 213 ~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~ 291 (493)
T 2uy1_A 213 EEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRIN 291 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHH
Confidence 456778999999999999999999999999 99877666665431
Q ss_pred ----HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 218 ----KEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 218 ----y~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
....++.++|...|++| ...+....++..+|.+-+...++.++|...|+++++..|+++..|..++.++...|+.
T Consensus 292 y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~ 370 (493)
T 2uy1_A 292 HLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDE 370 (493)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH
Confidence 01245688899999999 4333466777777877776244799999999999999999998888899988888888
Q ss_pred hHHHhhhh
Q 020109 294 EEEEQDNE 301 (331)
Q Consensus 294 eEa~~~~e 301 (331)
+.+....+
T Consensus 371 ~~aR~l~e 378 (493)
T 2uy1_A 371 ENARALFK 378 (493)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776555
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=2.2e-05 Score=88.24 Aligned_cols=115 Identities=10% Similarity=0.021 Sum_probs=87.8
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------- 241 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---------- 241 (331)
.+...+++|+.+...|++++|+.+|.+| +++..+...+.++ ...|+|++|.++|.+|.+.+++.
T Consensus 1104 ~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~-~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaY 1177 (1630)
T 1xi4_A 1104 EPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAA-NTSGNWEELVKYLQMARKKARESYVETELIFAL 1177 (1630)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhcccccccHHHHHHH
Confidence 3556778888888888888888888775 7888888888885 46788888888888877666331
Q ss_pred -----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 -----------------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 -----------------~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
...+...|..++. .|+|++|..+|.+| ..|..++.+|.++|++++|.+..+
T Consensus 1178 AKl~rleele~fI~~~n~ad~~~iGd~le~-eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1178 AKTNRLAELEEFINGPNNAHIQQVGDRCYD-EKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred HhhcCHHHHHHHHhCCCHHHHHHHHHHHHh-cCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 1223456777777 88888888888885 478888888888888888886654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=1.3e-05 Score=69.49 Aligned_cols=79 Identities=8% Similarity=-0.070 Sum_probs=68.1
Q ss_pred CCcccccHHHHHHhCC---CcHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 172 GSGFSGSNNNYSNNNH---GSSSTDAYYEKMIEAN-P-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~g---d~ekA~e~yekALeld-P-~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~ 246 (331)
......|||.++.+.+ ++++++.+++..++.+ | .+.++++++|..++ ..++|++|.+|++++|+++|+|..+..
T Consensus 31 ~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~-kl~~Y~~A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 31 SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHH-HccCHHHHHHHHHHHHhcCCCCHHHHH
Confidence 3445779999999988 6679999999999999 7 67899999998876 689999999999999999999998876
Q ss_pred HHHHH
Q 020109 247 LYADL 251 (331)
Q Consensus 247 ~lA~l 251 (331)
..-.+
T Consensus 110 Lk~~i 114 (152)
T 1pc2_A 110 LERLI 114 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=97.96 E-value=3.3e-05 Score=86.76 Aligned_cols=97 Identities=13% Similarity=0.049 Sum_probs=61.7
Q ss_pred hCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHH
Q 020109 185 NNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAES 264 (331)
Q Consensus 185 ~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAie 264 (331)
..+++++|.+++++ .+++.+|+.||..+ +..|++++|+.+|.+| +|+..+...+.++.+ .|++++|++
T Consensus 1088 ~i~nldrAiE~Aer-----vn~p~vWsqLAKAq-l~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~-lGkyEEAIe 1155 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAER-----CNEPAVWSQLAKAQ-LQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANT-SGNWEELVK 1155 (1630)
T ss_pred HHhhHHHHHHHHHh-----cCCHHHHHHHHHHH-HhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHH-cCCHHHHHH
Confidence 44444444444443 35677777777774 4677888888888776 677777777877777 788888888
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCch
Q 020109 265 YFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 265 yferALeldPdna~vl~~lA~~L~klG~~e 294 (331)
+|..|++..++. .+-..+|.+|.++++.+
T Consensus 1156 yL~mArk~~~e~-~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1156 YLQMARKKARES-YVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHHHHhhcccc-cccHHHHHHHHhhcCHH
Confidence 887777776432 11223555555554444
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-05 Score=79.73 Aligned_cols=80 Identities=10% Similarity=0.035 Sum_probs=67.7
Q ss_pred cCCHHHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHH
Q 020109 221 RGDFAKAEELCGRAIL-----ANPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS-----APDDC---YVLASYA 284 (331)
Q Consensus 221 ~GdyeeAee~~erAL~-----ldP~d~~v---L~~lA~ll~~~~Gd~deAieyferALel-----dPdna---~vl~~lA 284 (331)
.|+|++|+.+|+++++ +.|+++.+ +..+|.++.. +|+|++|+.++++++++ -|+++ ..+.++|
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~-~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLY-MQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4789999999999997 46777765 5577899999 99999999999999987 34555 4588999
Q ss_pred HHHHHcCCchHHHhhhh
Q 020109 285 KFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 285 ~~L~klG~~eEa~~~~e 301 (331)
.+|+.+|++++|+..++
T Consensus 390 ~~~~~qg~~~eA~~~~~ 406 (433)
T 3qww_A 390 RLYMGLENKAAGEKALK 406 (433)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHH
Confidence 99999999999997554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.94 E-value=7.3e-05 Score=62.97 Aligned_cols=98 Identities=12% Similarity=0.051 Sum_probs=82.3
Q ss_pred CCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHH
Q 020109 187 HGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRG---DFAKAEELCGRAILAN-P-SDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~G---dyeeAee~~erAL~ld-P-~d~~vL~~lA~ll~~~~Gd~de 261 (331)
.....+...|.+++..++.+....++||..+-. .. +..+++.+++..+..+ | ..-++++.+|..+++ .|+|++
T Consensus 15 ~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~-S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yk-lg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR-LKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHH-hhhHHH
Confidence 345688889999999999999999999988643 33 3455999999999887 5 678899999999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKF 286 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~ 286 (331)
|..|++.+|+.+|+|..+..-...+
T Consensus 93 A~~~~~~lL~~eP~n~QA~~Lk~~i 117 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQAKELERLI 117 (126)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998776554433
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.92 E-value=9.4e-05 Score=73.78 Aligned_cols=125 Identities=11% Similarity=0.084 Sum_probs=104.6
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
.+--+|++++...++.+.|...|++| ...+.....+..+|.+-+...++.+.|..+|+++++..|+++.++..|+.+..
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~ 365 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLL 365 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 34567888888888999999999999 43334667777788876656668999999999999999999999999999888
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
. .|+.+.|..+|+++ +....+|..+..+....|+.+.+...++...
T Consensus 366 ~-~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 366 R-IGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp H-HTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred H-cCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8 99999999999998 4568899999999999999888876555333
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.86 E-value=8.1e-05 Score=73.01 Aligned_cols=74 Identities=12% Similarity=-0.032 Sum_probs=66.1
Q ss_pred HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 201 EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC 277 (331)
Q Consensus 201 eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna 277 (331)
..+|.++.++..+|..+. ..|++++|..++++|+.++|+ ..++..+|+++.. .|++++|++.|++|+.++|...
T Consensus 271 ~~~~~~a~~~~alal~~l-~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~-~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSAL-VKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM-KGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp GGGTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHSCSHH
T ss_pred ccCCcCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcC
Confidence 567999999999887754 579999999999999999975 6778899999998 9999999999999999999664
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.86 E-value=5.3e-05 Score=75.95 Aligned_cols=101 Identities=9% Similarity=0.028 Sum_probs=51.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...+.|..|...|.|++|+.+|.++ ..+..+|.+++ ..|+|++|.+.|++| +++.+|.....++..
T Consensus 124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~-~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~ 189 (449)
T 1b89_A 124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLV-HLGEYQAAVDGARKA-----NSTRTWKEVCFACVD 189 (449)
T ss_dssp -------------CTTTHHHHHHHT--------TCHHHHHHHHH-TTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHH-HhccHHHHHHHHHHc-----CCchhHHHHHHHHHH
Confidence 4556666667777777777777765 35566666665 457777777777777 355555544444444
Q ss_pred -----------------------------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 255 -----------------------------AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 255 -----------------------------~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
..|++++|+.+|++++.+++....++..++.+|.+
T Consensus 190 ~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k 253 (449)
T 1b89_A 190 GKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 253 (449)
T ss_dssp TTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred cCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence 05555555555555555555555555555555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=5.6e-05 Score=74.52 Aligned_cols=81 Identities=10% Similarity=0.011 Sum_probs=67.9
Q ss_pred HcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCH---HHHHHH
Q 020109 220 VRGDFAKAEELCGRAILA-----NPSDGNI---LSLYADLIWQAHKDASRAESYFDQAVKS-----APDDC---YVLASY 283 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~l-----dP~d~~v---L~~lA~ll~~~~Gd~deAieyferALel-----dPdna---~vl~~l 283 (331)
.+|+|++|+.+|++++++ .|+++.+ +..+|.++.. +|++++|+.++++++++ -|+++ ..+.++
T Consensus 299 ~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~-~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nL 377 (429)
T 3qwp_A 299 AHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACIN-LGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKV 377 (429)
T ss_dssp HTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHh-hccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHH
Confidence 579999999999999964 5677765 5667888888 99999999999999977 34555 457899
Q ss_pred HHHHHHcCCchHHHhhhh
Q 020109 284 AKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 284 A~~L~klG~~eEa~~~~e 301 (331)
|.+|+.+|++++|+..++
T Consensus 378 a~~~~~~g~~~eA~~~~~ 395 (429)
T 3qwp_A 378 GKLQLHQGMFPQAMKNLR 395 (429)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHH
Confidence 999999999999997554
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=97.67 E-value=0.00026 Score=71.02 Aligned_cols=119 Identities=9% Similarity=-0.103 Sum_probs=79.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHH-----------------------------HHHHHcCCHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYAR-----------------------------FLKEVRGDFA 225 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~-----------------------------lLy~~~Gdye 225 (331)
....+|.+|.+.|+++.|+++|++| +++..|..... -+|+..|+++
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA-----~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc-----CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHH
Confidence 3557899999999999999999999 34544333111 2356789999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCC--CC-HHHHHHHHHHHHHc--CCchHHHh
Q 020109 226 KAEELCGRAILANPSDGNILSLYADLIWQA-HKDASRAESYFDQAVKSAP--DD-CYVLASYAKFLWDA--GEDEEEEQ 298 (331)
Q Consensus 226 eAee~~erAL~ldP~d~~vL~~lA~ll~~~-~Gd~deAieyferALeldP--dn-a~vl~~lA~~L~kl--G~~eEa~~ 298 (331)
+|..++++++.+++.....+..+|.++.+- .++..++++.|...+.+.| .- ..++.....++.-. ++++.|..
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 999999999999999999999999988540 2455555555554444433 01 11333344444444 55666653
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00027 Score=62.23 Aligned_cols=30 Identities=10% Similarity=-0.110 Sum_probs=25.4
Q ss_pred CHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 276 DCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 276 na~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
+.++.|.++.||.+++++++|..+++.+-.
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 447889999999999999999999885433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00028 Score=61.58 Aligned_cols=113 Identities=14% Similarity=0.048 Sum_probs=88.3
Q ss_pred ccHHHHHHhCCCc------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 177 GSNNNYSNNNHGS------SSTDAYYEKMIEANPGN--------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 177 ~N~A~~y~~~gd~------ekA~e~yekALeldP~n--------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~ 242 (331)
-+|...+++.|+. ++-.+.|++|+..-|-. ...|..||.+. ..+|.++|.+.|+.|+.+....+
T Consensus 17 ~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~--ei~D~d~aR~vy~~a~~~hKkFA 94 (161)
T 4h7y_A 17 LSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELK--AIQEPDDARDYFQMARANCKKFA 94 (161)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHH--HHHCGGGCHHHHHHHHHHCTTBH
T ss_pred HHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHhHHHH
Confidence 3577778888888 88889999999986642 34456667652 45899999999999998888889
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
.++..+|.+-.+ +|+..+|.+.+.+|+.+.|.....+ ..|..-++.|+.
T Consensus 95 Kiwi~~AqFEiR-qgnl~kARkILg~AiG~~~k~~~~l-e~a~~nl~~~~~ 143 (161)
T 4h7y_A 95 FVHISFAQFELS-QGNVKKSKQLLQKAVERGAVPLEML-EIALRNLNLQKK 143 (161)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTCBCHHHH-HHHHHHHHTTCS
T ss_pred HHHHHHHHHHHH-cccHHHHHHHHHHHhccCCCcHHHH-HHHHHhhhcCCC
Confidence 999999999998 9999999999999999998766554 344445555553
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00085 Score=58.55 Aligned_cols=74 Identities=24% Similarity=0.268 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 226 KAEELCGRAILANPS--------DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 226 eAee~~erAL~ldP~--------d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
+-.+.|++|+..-|- .++.+..||.+ .. .+|.++|.+.|+.|+++....+.+|..+|.|..++|+...|.
T Consensus 37 rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~e-i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kAR 114 (161)
T 4h7y_A 37 KLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KA-IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSK 114 (161)
T ss_dssp HHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HH-HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HH-hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHH
Confidence 334678888877663 56667778865 44 799999999999999998888999999999999999999988
Q ss_pred hhhh
Q 020109 298 QDNE 301 (331)
Q Consensus 298 ~~~e 301 (331)
+.+.
T Consensus 115 kILg 118 (161)
T 4h7y_A 115 QLLQ 118 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.001 Score=58.58 Aligned_cols=106 Identities=13% Similarity=-0.016 Sum_probs=80.0
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHH---------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----------
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNAL---------LLGNYARFLKEVRGDFAKAEELCGRAILANP---------- 239 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npe---------al~~yA~lLy~~~GdyeeAee~~erAL~ldP---------- 239 (331)
-.+-+...+.|+.|+.....++....+++. ++..+|+.+| .+++|.+|+.+|++||+..-
T Consensus 26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf-~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLF-HDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 345556678999999999997777544444 6788899987 68999999999999864321
Q ss_pred ---------------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 240 ---------------SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFL 287 (331)
Q Consensus 240 ---------------~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L 287 (331)
.+.++.+..|.++.. .+++++|+.+++..-. .-..+.+...+|+.|
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~-l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTV-LKQDKDAIAILDGIPS-RQRTPKINMLLANLY 165 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHH-TTCHHHHHHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHH-HCCHHHHHHHHhcCCc-hhcCHHHHHHHHHHh
Confidence 223788999999999 9999999998664311 125667777777765
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0045 Score=53.23 Aligned_cols=83 Identities=14% Similarity=-0.011 Sum_probs=68.5
Q ss_pred CCCHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Q 020109 204 PGNALLLGNYARFLKEVR--GDFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280 (331)
Q Consensus 204 P~npeal~~yA~lLy~~~--GdyeeAee~~erAL~ldP-~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl 280 (331)
.-.+...++||..|-... .+..+++.+++..+..+| ...++++.+|..+++ .|+|++|..|.+.+|+.+|+|..+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~yk-l~~Y~~Ar~y~d~lL~~eP~n~QA~ 114 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVG 114 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHH-hhhHHHHHHHHHHHHhcCCCcHHHH
Confidence 457888899998875322 245679999999999999 577899999999999 9999999999999999999998776
Q ss_pred HHHHHHH
Q 020109 281 ASYAKFL 287 (331)
Q Consensus 281 ~~lA~~L 287 (331)
.-...+-
T Consensus 115 ~Lk~~Ie 121 (144)
T 1y8m_A 115 ALKSMVE 121 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5544443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0067 Score=60.69 Aligned_cols=116 Identities=16% Similarity=0.025 Sum_probs=92.8
Q ss_pred CCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHH
Q 020109 187 HGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYADLIWQAHKDASRAES 264 (331)
Q Consensus 187 gd~ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-d~~vL~~lA~ll~~~~Gd~deAie 264 (331)
++.++|...|+++.+..-. |...+..+...+. ..|+.++|.++|++.....-. |...+..+-..+.+ .|+.++|.+
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~-~g~~~~A~~ 161 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAV-AKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR-KGDADKAYE 161 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH-CCCHHHHHH
Confidence 4578999999999886322 4555566665554 579999999999999876422 56666777777788 999999999
Q ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHcCCchHHHhhhhhcc
Q 020109 265 YFDQAVKSAP-DDCYVLASYAKFLWDAGEDEEEEQDNEEGQ 304 (331)
Q Consensus 265 yferALeldP-dna~vl~~lA~~L~klG~~eEa~~~~e~~~ 304 (331)
+|+++++..- .+...|..+...+.+.|+.++|...++++.
T Consensus 162 l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 162 VDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 9999998753 488899999999999999999998887654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0013 Score=55.34 Aligned_cols=79 Identities=8% Similarity=-0.073 Sum_probs=65.1
Q ss_pred CCcccccHHHHHHhCCCcHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSS---TDAYYEKMIEAN-P-GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILS 246 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ek---A~e~yekALeld-P-~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~ 246 (331)
+.....|||-.+.+..+... ++..++..+..+ | ..-+.++.+|..+| ..|+|.+|.++++.+|+.+|+|..++.
T Consensus 34 s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~y-klg~Y~~A~~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 34 SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY-RLKEYEKALKYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34456789999988876654 999999988887 5 56778899998877 689999999999999999999998877
Q ss_pred HHHHH
Q 020109 247 LYADL 251 (331)
Q Consensus 247 ~lA~l 251 (331)
+...+
T Consensus 113 Lk~~i 117 (126)
T 1nzn_A 113 LERLI 117 (126)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0069 Score=64.25 Aligned_cols=121 Identities=12% Similarity=0.115 Sum_probs=89.1
Q ss_pred HHHHHhCCC-cHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHh--------CCCC--------
Q 020109 180 NNYSNNNHG-SSSTDAYYEKMIEANPGNALLLGNYA-RFLKEVRGDFAKAEELCGRAILA--------NPSD-------- 241 (331)
Q Consensus 180 A~~y~~~gd-~ekA~e~yekALeldP~npeal~~yA-~lLy~~~GdyeeAee~~erAL~l--------dP~d-------- 241 (331)
-++....++ ++.|+.++++..+.+|.....+.... .++.....+.-+|.+...++++. .+.+
T Consensus 255 l~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~ 334 (754)
T 4gns_B 255 KSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMN 334 (754)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHH
T ss_pred HHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccC
Confidence 344444555 58899999999999997655433211 11111223456788888888742 2333
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 242 --GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 242 --~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
...+..-|.++.. +++++-|+++.++|+...|.+-..|+.++.+|..+|+++.|--.+-
T Consensus 335 ~~~~LL~~Qa~FLl~-K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLN 395 (754)
T 4gns_B 335 CMSDLLNIQTNFLLN-RGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAIN 395 (754)
T ss_dssp HHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cchHHHHHHHHHHhc-cCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHh
Confidence 2345555888888 9999999999999999999999999999999999999999986543
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0044 Score=52.65 Aligned_cols=81 Identities=15% Similarity=-0.014 Sum_probs=66.4
Q ss_pred CHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 206 NALLLGNYARFLKEVR--GDFAKAEELCGRAILANP-SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 206 npeal~~yA~lLy~~~--GdyeeAee~~erAL~ldP-~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
.+...++||..+-... .+..+++.+++..+..+| ..-++++.+|..+++ .|+|++|..|.+++++..|+|..+..-
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yk-lgdY~~Ar~y~d~lL~~eP~N~QA~~L 117 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGAL 117 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHH-hhhHHHHHHHHHHHHhhCCCCHHHHHH
Confidence 5778889997765332 245679999999999999 468899999999999 999999999999999999999987665
Q ss_pred HHHHH
Q 020109 283 YAKFL 287 (331)
Q Consensus 283 lA~~L 287 (331)
...+-
T Consensus 118 k~~Ie 122 (134)
T 3o48_A 118 KSMVE 122 (134)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.014 Score=58.44 Aligned_cols=128 Identities=6% Similarity=-0.018 Sum_probs=98.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHhCCC-CHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPG-NALLLGNYARFLKEVR---------GDFAKAEELCGRAILANPS-DGNI 244 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~-npeal~~yA~lLy~~~---------GdyeeAee~~erAL~ldP~-d~~v 244 (331)
+.+.-..|.+.|+.++|...|+++.+..-. |...++.+-.++. .. ++.++|.++|++.....-. |..+
T Consensus 29 l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~-~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t 107 (501)
T 4g26_A 29 LKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCS-LAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT 107 (501)
T ss_dssp HHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT-TCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-hCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence 445556777889999999999999987322 3444443333322 11 2478899999998876433 6677
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSA-PDDCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeld-Pdna~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
+..+...+.+ .|+.++|+++|+++.+.. ..+...|..+...|.+.|+.++|...++++..
T Consensus 108 yn~lI~~~~~-~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 108 FTNGARLAVA-KDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 7888888888 999999999999999874 34888999999999999999999998886654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.011 Score=55.67 Aligned_cols=68 Identities=22% Similarity=0.214 Sum_probs=59.8
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.+.++.+.|++.....|+.+|.|+.....|.++++ ..|++++|.+.++.+.+++|........|-.+
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLc-v~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l 74 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHL 74 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence 445689999999999999999999999999999987 78999999999999999999987765555433
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.013 Score=50.27 Aligned_cols=78 Identities=5% Similarity=-0.126 Sum_probs=64.8
Q ss_pred CcccccHHHHHHhCCCc---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGS---SSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~---ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
.....|||-++.+..+. .+++..++..+..+|. .-+.++.+|.-+| ..++|.+|.+|++.+|+.+|+|..+..+.
T Consensus 39 ~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~y-kl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 39 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 34567999999888754 5899999999999995 5667888888877 68999999999999999999999887655
Q ss_pred HHH
Q 020109 249 ADL 251 (331)
Q Consensus 249 A~l 251 (331)
..+
T Consensus 118 ~~I 120 (144)
T 1y8m_A 118 SMV 120 (144)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.012 Score=49.98 Aligned_cols=76 Identities=5% Similarity=-0.117 Sum_probs=64.1
Q ss_pred ccccHHHHHHhCCCc---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGS---SSTDAYYEKMIEANPG-NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~---ekA~e~yekALeldP~-npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
...|||-.+.+-++. .+++..++..+..+|. .-+.++.+|.-+| ..|+|.+|.++++++|+.+|+|..+......
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~y-klgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~ 120 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSM 120 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHH-HhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence 456899888887654 5899999999999995 4778888888877 5799999999999999999999998776554
Q ss_pred H
Q 020109 251 L 251 (331)
Q Consensus 251 l 251 (331)
+
T Consensus 121 I 121 (134)
T 3o48_A 121 V 121 (134)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.49 E-value=0.21 Score=50.28 Aligned_cols=31 Identities=16% Similarity=0.014 Sum_probs=19.8
Q ss_pred CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 203 NPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 203 dP~npeal~~yA~lLy~~~GdyeeAee~~erA 234 (331)
.-+++..|..+|..+ ...++++.|+++|.++
T Consensus 677 ~~~~~~~W~~la~~a-l~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 677 DESAEMKWRALGDAS-LQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TCCCHHHHHHHHHHH-HHTTCHHHHHHHHHHH
T ss_pred hhCcHhHHHHHHHHH-HHcCCHHHHHHHHHHc
Confidence 334566666777664 3567777777777764
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.11 E-value=0.11 Score=52.53 Aligned_cols=69 Identities=19% Similarity=0.093 Sum_probs=37.2
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
....+..|..+|.+|+.++|++...+..+|.+... .++.-+|+-||-|++......+.+..++..++.+
T Consensus 164 Y~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~-~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 164 YRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS-KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH-TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhc-ccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 34455555555555555555555555555555555 5555555555555555544455555555444443
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.25 E-value=0.91 Score=40.78 Aligned_cols=119 Identities=11% Similarity=0.143 Sum_probs=78.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHH-----------------hCCCCHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIE-----------------ANPGNALLLGN-YARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALe-----------------ldP~npeal~~-yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
+.||.+.++|.+|+.++++.|. .||.+.+++.+ +|.++ .+.|+.++|+.+|.+....+|-.
T Consensus 69 ~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~ll-tq~g~r~EaI~y~~~Sf~~~~lf 147 (242)
T 3kae_A 69 SLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLC-TLSGYREEGIGHYVRSFGKSFLF 147 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHH-HHhcCHHHhhhHhhhhcCCcccc
Confidence 4588899999999999999993 36888887765 56665 47899999999999999999987
Q ss_pred HHHHHHHH-----------HHHHHHcCCHHHHHH---------------HHHHHHHhCCC-CHHHHHHHHHHHHHcCCch
Q 020109 242 GNILSLYA-----------DLIWQAHKDASRAES---------------YFDQAVKSAPD-DCYVLASYAKFLWDAGEDE 294 (331)
Q Consensus 242 ~~vL~~lA-----------~ll~~~~Gd~deAie---------------yferALeldPd-na~vl~~lA~~L~klG~~e 294 (331)
+.+-..+- .+.. .|+..--.+ +.++--+.-|. -.++...++.-|..+|-.+
T Consensus 148 ~~vEnliyeN~vp~~~d~~~i~~--~~~~~i~~~y~~d~~~lHe~~s~~~ikkY~n~iPGiGSY~va~aa~~yf~lg~~d 225 (242)
T 3kae_A 148 SPVENLLLENKVPQKRDKENVRQ--TGRRGIEEEYVSDSIEFHESLSPSLVKKYMEHVPGIGSYFISNAARRYFNLGMND 225 (242)
T ss_dssp HHHHHHHHTTCCCCCC-------------CHHHHHHHHHHHHHHHCCHHHHHHHHTSTTTHHHHHHHHHHHHHHHTTCHH
T ss_pred chHHHHHhhcCCCcccchHHHHh--hhhccchhhhhhhHHHHHHhccHHHHHHHHHhCCCchhHHHHHHHHHHHhcccch
Confidence 77643221 1111 111111112 22233333442 2356778889999999888
Q ss_pred HHHhhhh
Q 020109 295 EEEQDNE 301 (331)
Q Consensus 295 Ea~~~~e 301 (331)
+...-.+
T Consensus 226 ~s~~lf~ 232 (242)
T 3kae_A 226 KSKACFE 232 (242)
T ss_dssp HHHHHHH
T ss_pred hHHHHHH
Confidence 7765443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.67 Score=46.51 Aligned_cols=108 Identities=17% Similarity=0.035 Sum_probs=62.1
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHH--------HhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMI--------EANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekAL--------eldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
.++|..+.+.++++.|+.+|.++- ....++.+.+..++... +..|++..|..+|.++ .+++ ..
T Consensus 685 ~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a-~~~~~~~~A~~~~~~~-----g~~~---~a 755 (814)
T 3mkq_A 685 RALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDA-ETTGKFNLAFNAYWIA-----GDIQ---GA 755 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHH-----TCHH---HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHH-HHcCchHHHHHHHHHc-----CCHH---HH
Confidence 689999999999999999999851 12233444444444443 2345555554444332 1211 11
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcCCchHHH
Q 020109 249 ADLIWQAHKDASRAESYFDQAVKSAPDD---CYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 249 A~ll~~~~Gd~deAieyferALeldPdn---a~vl~~lA~~L~klG~~eEa~ 297 (331)
..++.+ .+++++|+.+.+ +..|.. ..+...++..+...|+++.|+
T Consensus 756 ~~~~~~-~~~~~~A~~lA~---~~~~~~~~i~~~~~~~~~~L~~~~~~~~a~ 803 (814)
T 3mkq_A 756 KDLLIK-SQRFSEAAFLGS---TYGLGDNEVNDIVTKWKENLILNGKNTVSE 803 (814)
T ss_dssp HHHHHH-TTCHHHHHHHHH---HTTCCHHHHHHHHHHHHHHHHTTTCHHHHT
T ss_pred HHHHHH-cCChHHHHHHHH---HhCCChHHHHHHHHHHHHHHHhccchhHHH
Confidence 223334 555555555433 245544 367778888888888765555
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.89 E-value=0.47 Score=45.63 Aligned_cols=85 Identities=8% Similarity=-0.001 Sum_probs=65.7
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHH--------H--------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNAL--------L--------------LGNYARFLKEVRGDFAKAEELCGRAILANPSDGN 243 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npe--------a--------------l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~ 243 (331)
.++.+.|...+++|+.+-.+.+. + +..++..+ ...|++.+|...+.+++..+|-+-.
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~-l~~g~~~~a~~~l~~~~~~~P~~E~ 206 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAE-IACGRASAVIAELEALTFEHPYREP 206 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 46788899999999997443211 0 11122222 3568999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
++..+-.+++. .|+..+|+..|+++.+.
T Consensus 207 ~~~~lm~al~~-~Gr~~~Al~~y~~~r~~ 234 (388)
T 2ff4_A 207 LWTQLITAYYL-SDRQSDALGAYRRVKTT 234 (388)
T ss_dssp HHHHHHHHHHT-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHH
Confidence 99999999998 99999999999987664
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.46 Score=46.37 Aligned_cols=98 Identities=9% Similarity=-0.052 Sum_probs=72.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHH----H
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN---ALLLGNYARFLKEVRGDFAKAEELCGRAILAN--PSDGNI----L 245 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n---peal~~yA~lLy~~~GdyeeAee~~erAL~ld--P~d~~v----L 245 (331)
...-+|.+|...|++++|.++|.++....... .+++.....+. ...+|+..|..++.+|...- ..++.. .
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~-l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk 211 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLG-FFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK 211 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence 45678999999999999999999998875443 33444444443 35799999999999996542 233333 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 246 SLYADLIWQAHKDASRAESYFDQAVKSAP 274 (331)
Q Consensus 246 ~~lA~ll~~~~Gd~deAieyferALeldP 274 (331)
...|.+++. .++|.+|..+|-.++....
T Consensus 212 ~~~gl~~l~-~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 212 TYYGIHCLA-VRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp HHHHHGGGG-TSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHH-hChHHHHHHHHHHHhccCC
Confidence 344566666 8999999999999887754
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.35 E-value=0.28 Score=49.48 Aligned_cols=78 Identities=13% Similarity=0.107 Sum_probs=63.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
+-++|+...-+..++.|..||++|+.++|++...+..+|.+.. ..++.-+|..+|-|++....-.+.+..++..++-+
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~-~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILAS-SKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHH-HTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHh-cccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence 4556777777778899999999999999999999999998864 68999999999999987766666666666655543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.25 Score=52.39 Aligned_cols=59 Identities=17% Similarity=0.088 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
.+..-|.||- ..++|+-|+++.++|+...|.+...|+.||.+|.. +|||+.|+-.+.-+
T Consensus 339 LL~~Qa~FLl-~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~-l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLL-NRGDYELALGVSNTSTELALDSFESWYNLARCHIK-KEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-TTCHHHHHHHHHHS
T ss_pred HHHHHHHHHh-ccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHH-hccHHHHHHHHhcC
Confidence 3444566653 68999999999999999999999999999999999 99999999766644
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=92.63 E-value=0.52 Score=44.29 Aligned_cols=63 Identities=27% Similarity=0.316 Sum_probs=56.8
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
..++.++|++.+...|+.+|.|+.....|..++.- .|++++|.+.++.+.+++|........|
T Consensus 9 ~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv-~G~w~RA~~QL~~~a~l~p~~~~~a~~y 71 (273)
T 1zbp_A 9 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQL 71 (273)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCchhhHHHHHH
Confidence 47899999999999999999999999999999888 9999999999999999999776554333
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.35 E-value=1.9 Score=42.26 Aligned_cols=94 Identities=14% Similarity=-0.018 Sum_probs=68.1
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCC--CCHHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHHHH---
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANP--GNALLL----GNYARFLKEVRGDFAKAEELCGRAILAN---PSDGNIL--- 245 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP--~npeal----~~yA~lLy~~~GdyeeAee~~erAL~ld---P~d~~vL--- 245 (331)
.+|.+|...++|.+|...+.+.++.-. ++...+ ..-..+ |...+++.++..++.+|.+.. +.+|.+.
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~-~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKT-YHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHH-HHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 689999999999999999999888522 223222 222344 346799999999999997554 2445432
Q ss_pred -HHHHHHHH-HHcCCHHHHHHHHHHHHHhC
Q 020109 246 -SLYADLIW-QAHKDASRAESYFDQAVKSA 273 (331)
Q Consensus 246 -~~lA~ll~-~~~Gd~deAieyferALeld 273 (331)
..-|.++. . .++|.+|..+|-.+++..
T Consensus 183 ~~~~Gi~~l~~-~rdyk~A~~~F~eaf~~f 211 (394)
T 3txn_A 183 DLQSGILHAAD-ERDFKTAFSYFYEAFEGF 211 (394)
T ss_dssp HHHHHHHHHHT-TSCHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHh-ccCHHHHHHHHHHHHhcc
Confidence 33456666 6 999999999999998654
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=91.15 E-value=2.7 Score=37.75 Aligned_cols=93 Identities=11% Similarity=-0.076 Sum_probs=56.9
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHH--Hh---------------CCCC
Q 020109 179 NNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAI--LA---------------NPSD 241 (331)
Q Consensus 179 ~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL--~l---------------dP~d 241 (331)
|...+.-.|.|.+|.-++- +-+..-..+--+.+ +...+||.+|..+++..+ .+ ||.|
T Consensus 39 ~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LC-y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~D 112 (242)
T 3kae_A 39 MSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLC-YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGD 112 (242)
T ss_dssp HHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHH-HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTC
T ss_pred hhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccch
Confidence 3444555566655554431 11222222222223 346788889988888888 22 3445
Q ss_pred HHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Q 020109 242 GNI-LSLYADLIWQAHKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 242 ~~v-L~~lA~ll~~~~Gd~deAieyferALeldPdna~ 278 (331)
-++ ...+|.++.+ .|+.+||+.+|.+.....|-.+.
T Consensus 113 kEfFy~l~a~lltq-~g~r~EaI~y~~~Sf~~~~lf~~ 149 (242)
T 3kae_A 113 EEFFESLLGDLCTL-SGYREEGIGHYVRSFGKSFLFSP 149 (242)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHHHHHHH-hcCHHHhhhHhhhhcCCccccch
Confidence 553 4567888888 89999999999888888884443
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.57 E-value=1.3 Score=48.47 Aligned_cols=117 Identities=11% Similarity=-0.091 Sum_probs=83.1
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hC----------------
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAIL---AN---------------- 238 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~---ld---------------- 238 (331)
.+...+...+.++-|.+ .+..-|.++...+.+|.++ ...|++++|.++|++|-. .+
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~-L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIY-LKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHH-HHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHH-HhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 34445555666655543 4556788888888889885 478999999999998731 11
Q ss_pred ----CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHH----HHHHHHHHHHHcCCchHHHhhh
Q 020109 239 ----PSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAP-DDCY----VLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 239 ----P~d~~vL~~lA~ll~~~~Gd~deAieyferALeldP-dna~----vl~~lA~~L~klG~~eEa~~~~ 300 (331)
..-+.++.....++.+ .+.++.++++...|++..+ ++.. .|.++=..+..+++|++|-..+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~-~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL 961 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFE-ESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVAL 961 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHH-TSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHH
T ss_pred ccccccHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 1122344445555555 8999999999999999875 4432 6777888899999999997554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.79 E-value=9.7 Score=33.31 Aligned_cols=46 Identities=9% Similarity=0.028 Sum_probs=37.1
Q ss_pred HHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 183 SNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRA 234 (331)
Q Consensus 183 y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erA 234 (331)
..+.|+++.|.+..+.. ++...|..+|... ...|+++-|+++|.++
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~A-L~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEA-LAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHH-HHTTCHHHHHHHHHHT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHH-HHcCChHHHHHHHHHh
Confidence 34568899998887654 6788999999885 4789999999999876
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.73 E-value=3.4 Score=40.52 Aligned_cols=94 Identities=10% Similarity=0.191 Sum_probs=69.1
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCCCCHH----
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPG--N----ALLLGNYARFLKEVRGDFAKAEELCGRAI---LANPSDGN---- 243 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~--n----peal~~yA~lLy~~~GdyeeAee~~erAL---~ldP~d~~---- 243 (331)
.-+|..|+..|++.+|...+......--+ + .+++.....++ ...+|+.+|..++.++. ...+.++.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~-l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS-ILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45899999999999999999987653111 1 33444445554 46799999999999973 34445543
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKS 272 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALel 272 (331)
++...|.++.. .++|.+|..+|..+++.
T Consensus 220 ~~~~~~~~~~~-e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 220 YYNLLVKISLH-KREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHHHHHHHHH-HCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHhc
Confidence 44556777777 89999999999999875
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.93 Score=43.55 Aligned_cols=58 Identities=7% Similarity=-0.059 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
++..++.++.. .|++++|+..+.+++..+|.+-.+|..+..+|+..|+..+|...++.
T Consensus 173 a~~~~~~~~l~-~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~ 230 (388)
T 2ff4_A 173 AHTAKAEAEIA-CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 230 (388)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556777777 99999999999999999999999999999999999999999876653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.71 E-value=4.1 Score=45.00 Aligned_cols=95 Identities=7% Similarity=-0.153 Sum_probs=59.3
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIE-----ANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPS-DGNILSLYA 249 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALe-----ldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~-d~~vL~~lA 249 (331)
..-+-+.|.+.|+.++|...|.++-+ ..|+ ...|+.+-.-++ ..|+.++|.++|++.....-. |...+..+-
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glc-k~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI 207 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWA-RQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHH-hCCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence 34455577777888888888866543 2443 444444444434 468888888888888764421 444444455
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHhC
Q 020109 250 DLIWQAHKD-ASRAESYFDQAVKSA 273 (331)
Q Consensus 250 ~ll~~~~Gd-~deAieyferALeld 273 (331)
..+-+ .|+ .++|.++|+++.+..
T Consensus 208 ~glcK-~G~~~e~A~~Ll~EM~~kG 231 (1134)
T 3spa_A 208 QCMGR-QDQDAGTIERCLEQMSQEG 231 (1134)
T ss_dssp HHHHH-HTCCHHHHHHHHHHHHHHT
T ss_pred HHHHh-CCCcHHHHHHHHHHHHHcC
Confidence 55555 565 467778888888775
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.39 E-value=4.6 Score=44.07 Aligned_cols=117 Identities=9% Similarity=-0.088 Sum_probs=76.1
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHHcCCHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEA-----------------------NPGNALLLGNYARFLKEVRGDFAKAE 228 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALel-----------------------dP~npeal~~yA~lLy~~~GdyeeAe 228 (331)
|+...+-+|++|...|++++|..+|++|-.. +...+.++.....+ ++..+.++.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~L-Fe~~~~~~~vi 919 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKK-LFEESAYIDAL 919 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHH-HHHTSCCHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHH-HHHcCCHHHHH
Confidence 4444677899999999999999999887321 11123445555555 45789999999
Q ss_pred HHHHHHHHhCC-CCHH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 229 ELCGRAILANP-SDGN----ILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 229 e~~erAL~ldP-~d~~----vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
++...||+..+ ++.. .+..+-..... .++|++|...+.+.=. .......+..+...+...+
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~-l~~ye~Ay~aL~~~pd-~~~r~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACA-AGKFDAAHVALMVLST-TPLKKSCLLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHH-HCCSGGGGHHHHHHHH-SSSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHh-hCCHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHhCC
Confidence 99999998775 4443 33444555666 8999999777754422 2233444555544444433
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=81.76 E-value=7.3 Score=38.04 Aligned_cols=87 Identities=9% Similarity=-0.062 Sum_probs=63.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH----
Q 020109 212 NYARFLKEVRGDFAKAEELCGRAILANP--SDG----NILSLYADLIWQAHKDASRAESYFDQAVKSA---PDDCY---- 278 (331)
Q Consensus 212 ~yA~lLy~~~GdyeeAee~~erAL~ldP--~d~----~vL~~lA~ll~~~~Gd~deAieyferALeld---Pdna~---- 278 (331)
.+|.+++ ..|+|.+|.+++.+++..-. +|. +++..-..++.. .+++.++..+|.+|.+.. +.++.
T Consensus 104 kL~~l~~-~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~-~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~ 181 (394)
T 3txn_A 104 RLIALYF-DTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHA-LSNLPKARAALTSARTTANAIYCPPKVQGA 181 (394)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHH-HhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhccCCCCHHHHHH
Confidence 6788865 68999999999999886422 122 233444566777 999999999999998774 23443
Q ss_pred HHHHHHHHHH-HcCCchHHHhhh
Q 020109 279 VLASYAKFLW-DAGEDEEEEQDN 300 (331)
Q Consensus 279 vl~~lA~~L~-klG~~eEa~~~~ 300 (331)
+...-|.+++ ..++|.+|...+
T Consensus 182 i~~~~Gi~~l~~~rdyk~A~~~F 204 (394)
T 3txn_A 182 LDLQSGILHAADERDFKTAFSYF 204 (394)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHhhHHHHHhccCHHHHHHHH
Confidence 4455688888 899999998544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.74 E-value=22 Score=39.34 Aligned_cols=95 Identities=8% Similarity=-0.100 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILA----NPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSA-PDDCYVLASY 283 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~l----dP~d~~vL~~lA~ll~~~~Gd~deAieyferALeld-Pdna~vl~~l 283 (331)
.++.+-..++ ..|+.++|.++|++.... -.-|...+..+-..+.+ .|+.++|.++|+++.+.. .-|...|..+
T Consensus 129 TynaLIdglc-K~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck-~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 129 RLLAFFKCCL-LTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR-QGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHH-HHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHh-CCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 3444555554 579999999999765421 23366677778888888 999999999999999875 2588899999
Q ss_pred HHHHHHcCCc-hHHHhhhhhccc
Q 020109 284 AKFLWDAGED-EEEEQDNEEGQH 305 (331)
Q Consensus 284 A~~L~klG~~-eEa~~~~e~~~~ 305 (331)
-.++.+.|+. ++|...+++|..
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHH
Confidence 9999999986 566555555543
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.28 E-value=6.1 Score=34.61 Aligned_cols=55 Identities=15% Similarity=0.084 Sum_probs=45.5
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 020109 205 GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQA 269 (331)
Q Consensus 205 ~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferA 269 (331)
.|+...+.+| ...|+++.|.++.+.+ ++...|..+|..... .|+++-|+..|.++
T Consensus 6 ~D~~~rF~LA----L~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~-~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 6 QDPHIRFDLA----LEYGNLDAALDEAKKL-----NDSITWERLIQEALA-QGNASLAEMIYQTQ 60 (177)
T ss_dssp SCHHHHHHHH----HHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHH-TTCHHHHHHHHHHT
T ss_pred CChHHHHHHH----HhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHH-cCChHHHHHHHHHh
Confidence 4667777776 3579999999998765 689999999999999 99999999888753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 331 | ||||
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 1e-09 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 6e-06 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 1e-06 | |
| d2onda1 | 308 | a.118.8.7 (A:242-549) Cleavage stimulation factor | 0.002 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 7e-06 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-05 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 2e-04 | |
| d1nzna_ | 122 | a.118.8.1 (A:) Mitochondria fission protein Fis1 { | 3e-04 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 0.002 |
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 55.4 bits (133), Expect = 1e-09
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 1/109 (0%)
Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
+ I+A+P +A L ++ L GDF +A+E ++I P S L+
Sbjct: 17 ELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVK 75
Query: 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302
A A+ V ++ + + E+ + +
Sbjct: 76 AAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 44.6 bits (105), Expect = 6e-06
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280
G +A EL AI A+P D ++ S + +L D RA+ Q++K P+
Sbjct: 9 EGQLQQALELLIEAIKASPKDASLRSSFIEL-LCIDGDFERADEQLMQSIKLFPEYLPGA 67
Query: 281 ASYAKFLWDAGEDEEEEQD 299
+ + A ++ Q
Sbjct: 68 SQLRHLVKAAQARKDFAQG 86
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 47.3 bits (111), Expect = 1e-06
Identities = 15/101 (14%), Positives = 33/101 (32%)
Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
+ Y +++ + L+ + +A + ++ A + +
Sbjct: 120 SIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEY 179
Query: 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDE 294
KD S A F+ +K D + +Y +L ED
Sbjct: 180 YCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDN 220
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.3 bits (85), Expect = 0.002
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 14/121 (11%)
Query: 196 YEKMIEANPGNALLLGNYARFLKEV-------------RGDFAKAEELCGRAI-LANPSD 241
YE+ + + + A++L++ + +A + RAI +
Sbjct: 39 YEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 98
Query: 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301
+ YAD K Y D V Y KF A + +
Sbjct: 99 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158
Query: 302 E 302
+
Sbjct: 159 K 159
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.0 bits (105), Expect = 7e-06
Identities = 17/104 (16%), Positives = 31/104 (29%), Gaps = 1/104 (0%)
Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280
GDF AE C + P + +L L + I + R+ + A+K P
Sbjct: 12 AGDFEAAERHCMQLWRQEPDNTGVLLLLS-SIHFQCRRLDRSAHFSTLAIKQNPLLAEAY 70
Query: 281 ASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHTSPPNFFHGASHH 324
++ + G+ +E + N
Sbjct: 71 SNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAA 114
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 4e-05
Identities = 21/131 (16%), Positives = 37/131 (28%), Gaps = 34/131 (25%)
Query: 194 AYYEKMIEANPGNALLLGNYARFLKEV--------------------------------- 220
Y + IE P N A LKE
Sbjct: 258 DTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317
Query: 221 RGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVL 280
+G+ +A L +A+ P S A + Q A ++ +A++ +P
Sbjct: 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLAS-VLQQQGKLQEALMHYKEAIRISPTFADAY 376
Query: 281 ASYAKFLWDAG 291
++ L +
Sbjct: 377 SNMGNTLKEMQ 387
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 13/131 (9%), Positives = 31/131 (23%), Gaps = 1/131 (0%)
Query: 194 AYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253
+ ++ P N +L + + ++ AI NP S ++
Sbjct: 20 RHCMQLWRQEPDNTGVLLLLSSIHFQ-CRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYK 78
Query: 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEEGQHQTDHSHTS 313
+ + E Y + A + + + Q+ D
Sbjct: 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVR 138
Query: 314 PPNFFHGASHH 324
+
Sbjct: 139 SDLGNLLKALG 149
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (87), Expect = 3e-04
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 3/85 (3%)
Query: 195 YYEKMIEANPGNALLLGNYARFLKEV--RGDFAKAEELCGRAILANPSDGNILSLYA-DL 251
++ A + YA L D K L + + ++ +
Sbjct: 21 KFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80
Query: 252 IWQAHKDASRAESYFDQAVKSAPDD 276
K+ +A Y +++ P +
Sbjct: 81 GNYRLKEYEKALKYVRGLLQTEPQN 105
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 0.002
Identities = 9/110 (8%), Positives = 24/110 (21%), Gaps = 1/110 (0%)
Query: 193 DAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252
Y+KM+ + AL + + + ANP+ + + + +
Sbjct: 37 QDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN-RANPNRSEVQANLSLFL 95
Query: 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302
A ++ + +
Sbjct: 96 EAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSS 145
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 331 | |||
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.7 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.69 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.67 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.65 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.64 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.63 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.59 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.57 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.57 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.57 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.55 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 99.54 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.51 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.51 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.5 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.48 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.47 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.46 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.46 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.46 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.45 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.4 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.38 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.35 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.14 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.13 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.12 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.1 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.09 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.08 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.05 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.03 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.03 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.01 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 99.01 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.97 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.96 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.91 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.9 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.87 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.81 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.7 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 98.68 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 98.55 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.46 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.36 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 98.12 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 98.08 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.06 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 97.95 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.72 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.58 |
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=2e-16 Score=126.55 Aligned_cols=111 Identities=16% Similarity=0.146 Sum_probs=104.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+.+-|+.++..|++++|+.+|+++|+.+|+++.++.++|.++. ..|++++|+.+|++++.++|+++.++..+|.++..
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~- 83 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYA-KKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF- 83 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccc-ccccccccchhhhhHHHhccchhhHHHHHHHHHHH-
Confidence 3456889999999999999999999999999999999999965 68999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLW 288 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~ 288 (331)
+|++++|+..|+++++++|++..++..++.+..
T Consensus 84 ~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~ 116 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA 116 (117)
T ss_dssp TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence 999999999999999999999999999887754
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=3e-16 Score=130.45 Aligned_cols=119 Identities=18% Similarity=0.059 Sum_probs=108.2
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHK 257 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~G 257 (331)
..|+.|++.++|++|+.+|+++|+++|+++.++.++|.++. ..|++++|+.+|++||+++|+++.++..+|.++.. .|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~-~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYL-RTECYGYALGDATRAIELDKKYIKGYYRRAASNMA-LG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHH-hccccchHHHHHHHHHHHcccchHHHHHHHHHHHH-cC
Confidence 46788999999999999999999999999999999999975 68999999999999999999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--CCchHHHh
Q 020109 258 DASRAESYFDQAVKSAPDDCYVLASYAKFLWDA--GEDEEEEQ 298 (331)
Q Consensus 258 d~deAieyferALeldPdna~vl~~lA~~L~kl--G~~eEa~~ 298 (331)
++++|+..|+++++++|++..++..++.+.... ..++++..
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~ 135 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIA 135 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999998888776544 33555553
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=6.3e-16 Score=133.85 Aligned_cols=122 Identities=10% Similarity=0.040 Sum_probs=113.7
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIW 253 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~ 253 (331)
..++++|.+|...|++++|+.+|+++|+++|+++.+++++|.++. ..|++++|+++|++|++++|+++.++..+|.+++
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLT-QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHH-HHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence 457889999999999999999999999999999999999999965 7899999999999999999999999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 254 QAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 254 ~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
. .|++++|+.+|+++++.+|.+...+..++.++...+..+.+.
T Consensus 117 ~-~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~ 159 (259)
T d1xnfa_ 117 Y-GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKE 159 (259)
T ss_dssp H-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred H-HhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHH
Confidence 9 999999999999999999999999988888888887655444
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.65 E-value=1.2e-16 Score=134.05 Aligned_cols=112 Identities=14% Similarity=0.032 Sum_probs=99.3
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+-+.|+.|++.|+|++|+.+|++||+++|+++.+++++|.++ ...|++++|+.+|++||+++|+++.++..+|.++..
T Consensus 7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y-~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~- 84 (201)
T d2c2la1 7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCY-LKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLE- 84 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH-HHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHH-hhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHH-
Confidence 457789999999999999999999999999999999999996 478999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
.|++++|+.+|++|++++|++...+...+..+..
T Consensus 85 l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 85 MESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 9999999999999999998655443333333333
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=1.9e-15 Score=133.70 Aligned_cols=127 Identities=19% Similarity=0.183 Sum_probs=120.7
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....++|..|...+++++|+.+|+++++++|+++.++..+|.++. ..+++.+|+++|++++...|.++.++..++.++
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIK 315 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhhhccCCccchhhhHHHHHH
Confidence 3456789999999999999999999999999999999999999975 679999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.. .|++++|+++|+++++++|+++.++..+|.+|...|++++|...++
T Consensus 316 ~~-~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 363 (388)
T d1w3ba_ 316 RE-QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYK 363 (388)
T ss_dssp HT-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HH-CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99 9999999999999999999999999999999999999999998886
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=1.5e-15 Score=140.20 Aligned_cols=126 Identities=12% Similarity=0.043 Sum_probs=117.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...+++.++.+.+.+++|+.+|++||++||++..+|++.|.++....+++++|++++++|++++|++..++..+|+++..
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~ 124 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW 124 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHh
Confidence 35688899999999999999999999999999999999999876444579999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++++|+++|+++++++|++..+|.++|.++..++++++|...++
T Consensus 125 -l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~ 170 (315)
T d2h6fa1 125 -LRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVD 170 (315)
T ss_dssp -HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred -hccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 9999999999999999999999999999999999999999997655
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=4.3e-15 Score=131.36 Aligned_cols=119 Identities=16% Similarity=0.158 Sum_probs=113.3
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
+.....++|.+|...+++++|+.+|++++...|.++.++..++.++. ..|++++|+++|++|++++|+++.++..+|.+
T Consensus 270 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~ 348 (388)
T d1w3ba_ 270 FPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR-EQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348 (388)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 45567889999999999999999999999999999999999999865 68999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Q 020109 252 IWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGE 292 (331)
Q Consensus 252 l~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~ 292 (331)
++. .|++++|+.+|++|++++|+++.++.++|.+|.++|+
T Consensus 349 ~~~-~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 349 LQQ-QGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHT-TTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 999 9999999999999999999999999999999999885
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=2.3e-14 Score=121.41 Aligned_cols=120 Identities=14% Similarity=0.047 Sum_probs=107.2
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA---------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPS 240 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~np---------------eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~ 240 (331)
+.+.|+.++..++|++|+.+|++||...|... .++.++|.++. ..+++++|+.++++||.++|+
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~-k~~~~~~A~~~~~~al~~~p~ 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL-KLQAFSAAIESCNKALELDSN 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHH-hhhhcccccchhhhhhhcccc
Confidence 34678899999999999999999999988652 34567788754 689999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 241 DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 241 d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
++.++..+|.+++. .|++++|+.+|++|++++|++..+...++.++....+..+.+
T Consensus 95 ~~~a~~~~g~~~~~-~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e 150 (170)
T d1p5qa1 95 NEKGLSRRGEAHLA-VNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 150 (170)
T ss_dssp CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHH-hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999999999988887665554
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.7e-15 Score=123.56 Aligned_cols=113 Identities=12% Similarity=0.002 Sum_probs=100.2
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE--VRGDFAKAEELCGRAILANPSD--GNILSLYADLI 252 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~--~~GdyeeAee~~erAL~ldP~d--~~vL~~lA~ll 252 (331)
.|+++.+...+++++|++.|+++|.++|.++.++++||.++.. ..+++.+|+.+|++++..+|++ +.+++.+|.++
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 4778889999999999999999999999999999999999752 1346678999999999999876 45899999999
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDA 290 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~kl 290 (331)
+. .|++++|+.+|+++|+++|++..++..+..+..+.
T Consensus 83 ~~-~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~ 119 (122)
T d1nzna_ 83 YR-LKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAM 119 (122)
T ss_dssp HH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HH-HhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHH
Confidence 99 99999999999999999999999988887776554
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=3.6e-14 Score=122.56 Aligned_cols=121 Identities=12% Similarity=0.058 Sum_probs=109.8
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
+.|-|..+..++++++|+.+|.+ +.|.++.+++++|.+++ ..|++++|+++|++||+++|+++.++..+|.++++
T Consensus 8 l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~-~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~- 82 (192)
T d1hh8a_ 8 LWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYT-ILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ- 82 (192)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh-
Confidence 45788999999999999999986 46778999999999975 78999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 256 HKDASRAESYFDQAVKSAPDD----------------CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdn----------------a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+|++++|+..|++|++..+.+ +.+++++|.++..++++++|...++
T Consensus 83 ~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~ 144 (192)
T d1hh8a_ 83 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLA 144 (192)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999976643 4788999999999999999997654
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=4.4e-14 Score=125.91 Aligned_cols=101 Identities=12% Similarity=-0.020 Sum_probs=58.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..++|.++...+++++|+.+|++++..+|+++.++..+|.++. ..|++++|+++|++|++++|+++.++..+|.+++.
T Consensus 175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~- 252 (323)
T d1fcha_ 175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLA-NGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN- 252 (323)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred chhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhccc-ccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH-
Confidence 3455555556666666666666666666666666665665543 45666666666666666666666666666666655
Q ss_pred cCCHHHHHHHHHHHHHhCCCCHH
Q 020109 256 HKDASRAESYFDQAVKSAPDDCY 278 (331)
Q Consensus 256 ~Gd~deAieyferALeldPdna~ 278 (331)
.|++++|+.+|++|++++|++..
T Consensus 253 ~g~~~~A~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 253 LGAHREAVEHFLEALNMQRKSRG 275 (323)
T ss_dssp HTCHHHHHHHHHHHHHHHHTC--
T ss_pred CCCHHHHHHHHHHHHHhCCcChh
Confidence 56666666666666665555443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.54 E-value=5.4e-15 Score=122.97 Aligned_cols=115 Identities=18% Similarity=0.117 Sum_probs=100.0
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---------VRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~---------~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
-|.+.+.|++|+.+|++||+++|+++.+++++|.++.. ..+++++|+++|++||+++|+++.++..+|.++
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY 85 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence 35666789999999999999999999999999988753 235678999999999999999999999999999
Q ss_pred HHHcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 253 WQAHK-----------DASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 253 ~~~~G-----------d~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
.. .| ++++|+++|++|++++|++..++..++.+....+.+.+..
T Consensus 86 ~~-~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e~~ 140 (145)
T d1zu2a1 86 TS-FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAY 140 (145)
T ss_dssp HH-HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHH
T ss_pred HH-cccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 54 4799999999999999999999999999887766665543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.51 E-value=5.6e-14 Score=117.78 Aligned_cols=120 Identities=18% Similarity=0.113 Sum_probs=107.6
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEA----------------NPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANP 239 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALel----------------dP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP 239 (331)
..+.+..++..++|++|+.+|++||+. +|.+..++.++|.++. ..+++++|+.+|.+||+++|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~~~~~~Ai~~~~~al~~~p 108 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEIDP 108 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHH-hhcccchhhhhhhhhhhhhh
Confidence 346688899999999999999999874 5666777888998864 68999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 240 SDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 240 ~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
+++.++..+|.++.. .|++++|+..|++|++++|++..++..+..+...+....+++
T Consensus 109 ~~~~a~~~~g~~~~~-l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~ 165 (169)
T d1ihga1 109 SNTKALYRRAQGWQG-LKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 165 (169)
T ss_dssp TCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHhHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999 999999999999999999999999999999998877666554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.3e-13 Score=122.88 Aligned_cols=118 Identities=10% Similarity=0.099 Sum_probs=108.8
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPG--NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDA 259 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~--npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~ 259 (331)
.+...+.+.+|+.+|+++++.+|+ ++.++..+|.++. ..|++++|+.+|++++..+|+++.++..+|.++.. .|++
T Consensus 145 ~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~g~~ 222 (323)
T d1fcha_ 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN-GNQS 222 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-TTCH
T ss_pred HHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH-HHHHHhhhhcccccccccccccccchhhhhhcccc-cccc
Confidence 344556789999999999999997 5677888898865 68999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
++|+.+|+++++++|+++.+++.+|.+|..+|++++|...++
T Consensus 223 ~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 264 (323)
T d1fcha_ 223 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFL 264 (323)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999997765
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.50 E-value=1.1e-13 Score=109.61 Aligned_cols=93 Identities=10% Similarity=-0.044 Sum_probs=81.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..+.|..+...|++++|+.+|+++|+.+|+++.++..+|.++ ...+++++|+.+|++|++++|+++.++..+|.++..
T Consensus 19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~-~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~- 96 (112)
T d1hxia_ 19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQ-AENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN- 96 (112)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhh-hhhhhHHHhhcccccccccccccccchHHHHHHHHH-
Confidence 456888888889999999999999999999999988888886 467899999999999999999999999999998888
Q ss_pred cCCHHHHHHHHHHHH
Q 020109 256 HKDASRAESYFDQAV 270 (331)
Q Consensus 256 ~Gd~deAieyferAL 270 (331)
.|++++|+++|+|.|
T Consensus 97 ~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 97 EHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh
Confidence 889999999888875
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=3.2e-13 Score=116.50 Aligned_cols=113 Identities=18% Similarity=0.142 Sum_probs=103.2
Q ss_pred CCcHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHH
Q 020109 187 HGSSSTDAYYEKMIEANP----GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRA 262 (331)
Q Consensus 187 gd~ekA~e~yekALeldP----~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deA 262 (331)
.+.+.|+..+++++...+ ..+.+++.+|.++. ..|++++|+++|++||.++|+++.++..+|.++.. .|++++|
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~-~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~-~g~~~~A 90 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYD-SLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQ-AGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-TTCHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHH-HHHHHHh
Confidence 456788999999987644 35668889998865 78999999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+++|+++++++|++..++..+|.++..+|++++|...++
T Consensus 91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 129 (259)
T d1xnfa_ 91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLL 129 (259)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999999999999999999999999998776
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.47 E-value=3.2e-13 Score=112.26 Aligned_cols=112 Identities=12% Similarity=0.032 Sum_probs=99.6
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNA----------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD 241 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~np----------------eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d 241 (331)
.-|+-+++.++|.+|+.+|++||...+... .++.++|.+++ ..+++++|+++|++||.++|++
T Consensus 22 ~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Al~~~~~al~~~p~~ 100 (153)
T d2fbna1 22 EEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYN-KNKDYPKAIDHASKVLKIDKNN 100 (153)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHH-Hhcccchhhhhhhccccccchh
Confidence 356788899999999999999999766432 24567888865 6899999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Q 020109 242 GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAG 291 (331)
Q Consensus 242 ~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG 291 (331)
..+++.+|.+++. .|++++|+.+|+++++++|++..+...+..+..++.
T Consensus 101 ~ka~~~~g~~~~~-lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~ 149 (153)
T d2fbna1 101 VKALYKLGVANMY-FGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK 149 (153)
T ss_dssp HHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred hhhhHHhHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999 999999999999999999999999999988876653
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=3.6e-13 Score=108.82 Aligned_cols=104 Identities=18% Similarity=0.270 Sum_probs=91.3
Q ss_pred ccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH-------HHHHHH
Q 020109 177 GSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGN-------ILSLYA 249 (331)
Q Consensus 177 ~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~-------vL~~lA 249 (331)
-|.|+.|+..++|++|+.+|+++|+++|+++.++.++|.++. ..|+|++|+++|++||+++|+++. ++..+|
T Consensus 8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~-~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYF-EKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHH-HcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 468899999999999999999999999999999999999976 679999999999999999998865 455667
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 250 DLIWQAHKDASRAESYFDQAVKSAPDDCYVLASY 283 (331)
Q Consensus 250 ~ll~~~~Gd~deAieyferALeldPdna~vl~~l 283 (331)
.++.. .+++++|+++|.+++..+++ ..+...+
T Consensus 87 ~~~~~-~~~~~~A~~~~~kal~~~~~-~~~~~~l 118 (128)
T d1elra_ 87 NSYFK-EEKYKDAIHFYNKSLAEHRT-PDVLKKC 118 (128)
T ss_dssp HHHHH-TTCHHHHHHHHHHHHHHCCC-HHHHHHH
T ss_pred HHHHH-hCCHHHHHHHHHHHHhcCCC-HHHHHHH
Confidence 77777 99999999999999999884 5554444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.46 E-value=5.9e-13 Score=111.92 Aligned_cols=118 Identities=14% Similarity=0.085 Sum_probs=104.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGN---------------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG 242 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~n---------------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~ 242 (331)
..|+.++..|+|.+|+.+|++||...|.. ..++.++|.++. ..+++++|+.+|++|+.++|+++
T Consensus 20 e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~-~l~~~~~Ai~~~~~al~l~p~~~ 98 (168)
T d1kt1a1 20 EKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL-KLREYTKAVECCDKALGLDSANE 98 (168)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHH-HhhhcccchhhhhhhhhcccchH
Confidence 45788999999999999999999865542 233567888865 68999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHH
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEE 297 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~ 297 (331)
.++..+|.++.. .|++++|+..|+++++++|++..++..++.+.....++.+..
T Consensus 99 ~a~~~~~~~~~~-l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~ 152 (168)
T d1kt1a1 99 KGLYRRGEAQLL-MNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERD 152 (168)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHH
Confidence 999999999999 999999999999999999999999999999998887765544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=2e-13 Score=125.75 Aligned_cols=120 Identities=12% Similarity=0.011 Sum_probs=111.4
Q ss_pred CCcccccHHHHHHhCC-CcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 172 GSGFSGSNNNYSNNNH-GSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYAD 250 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~g-d~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ 250 (331)
+.....|.|.++...+ ++++|+.+|+++|+.+|++..++.++|.++. ..|++++|+++|++|++++|++..++..+|+
T Consensus 76 ~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~ 154 (315)
T d2h6fa1 76 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQW 154 (315)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH-hhccHHHHHHHHhhhhhhhhcchHHHHHHHH
Confidence 4445678888888876 5899999999999999999999999999865 6899999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 251 LIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 251 ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
++.. .+++++|+++|+++++++|.+..+|.+++.++...+.+
T Consensus 155 ~~~~-~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~ 196 (315)
T d2h6fa1 155 VIQE-FKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGY 196 (315)
T ss_dssp HHHH-HTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHH-HHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHcccc
Confidence 9999 99999999999999999999999999999999998875
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.45 E-value=4.6e-13 Score=111.70 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAK 285 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~ 285 (331)
++..+...|..++ ..|+|++|+.+|++||.++|+++.++..+|.+++. .|++++|+.+|++|++++|+++.+|+.+|.
T Consensus 3 ~a~~l~~~Gn~~~-~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~-~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 3 SAQELKEQGNRLF-VGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLK-MQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhh-hhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 4556778888876 68999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHcCCchHHHhhhhh
Q 020109 286 FLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 286 ~L~klG~~eEa~~~~e~ 302 (331)
+|..+|++++|...++.
T Consensus 81 ~~~~l~~~~~A~~~~~~ 97 (201)
T d2c2la1 81 CQLEMESYDEAIANLQR 97 (201)
T ss_dssp HHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 99999999999987764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=1.8e-12 Score=111.73 Aligned_cols=108 Identities=9% Similarity=-0.017 Sum_probs=96.6
Q ss_pred CCcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC----------
Q 020109 172 GSGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD---------- 241 (331)
Q Consensus 172 ~~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d---------- 241 (331)
++...+|+|.+|...|++++|+.+|++||++||+++.+++++|.+++ ..|++++|...|++|+...+.+
T Consensus 35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~-~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~ 113 (192)
T d1hh8a_ 35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY-QTEKYDLAIKDLKEALIQLRGNQLIDYKILGL 113 (192)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHH-hhccHHHHHHHHHHHHHhCccCchHHHHHhhh
Confidence 45567899999999999999999999999999999999999999975 6899999999999999886654
Q ss_pred ------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 020109 242 ------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLA 281 (331)
Q Consensus 242 ------~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~ 281 (331)
..++..+|.++.. .+++++|++.|++|+++.|+......
T Consensus 114 ~~~~~~~e~~~n~a~~~~~-~~~~~~A~~~l~~A~~~~~~~~~~~~ 158 (192)
T d1hh8a_ 114 QFKLFACEVLYNIAFMYAK-KEEWKKAEEQLALATSMKSEPRHSKI 158 (192)
T ss_dssp CCEEEHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCSGGGGHH
T ss_pred hcccchHHHHHHHHHHHHH-CCCHHHHHHHHHHHHhcCCCcchHHH
Confidence 4678899999999 99999999999999999997543333
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.38 E-value=2.9e-12 Score=101.80 Aligned_cols=90 Identities=19% Similarity=0.036 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 210 l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
+..-|..++ ..|+|++|+.+|.+||+++|+++.++..+|.+++. .|++++|+.+|+++++++|+++.+|+.+|.++..
T Consensus 6 l~~~g~~~~-~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 6 LKEKGNKAL-SVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAK-KGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHhcCCcchhhhhcccccccc-cccccccchhhhhHHHhccchhhHHHHHHHHHHH
Confidence 345677765 68999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchHHHhhhh
Q 020109 290 AGEDEEEEQDNE 301 (331)
Q Consensus 290 lG~~eEa~~~~e 301 (331)
+|++++|...++
T Consensus 84 ~~~~~~A~~~~~ 95 (117)
T d1elwa_ 84 LNRFEEAKRTYE 95 (117)
T ss_dssp TTCHHHHHHHHH
T ss_pred ccCHHHHHHHHH
Confidence 999999998887
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.37 E-value=2.4e-12 Score=101.76 Aligned_cols=90 Identities=11% Similarity=-0.053 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 210 l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
.+.+|..+. ..|++++|+.+|++|+.++|+++.++..+|.++.. .+++++|+.+|++|++++|++..++..+|.+|..
T Consensus 19 ~~~~g~~~~-~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~-~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~ 96 (112)
T d1hxia_ 19 PMEEGLSML-KLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAE-NEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 96 (112)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHhhhHHHHHHHhhhcccccccchhhhhhhhhhhh-hhhHHHhhcccccccccccccccchHHHHHHHHH
Confidence 456777765 68999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchHHHhhhh
Q 020109 290 AGEDEEEEQDNE 301 (331)
Q Consensus 290 lG~~eEa~~~~e 301 (331)
+|++++|...++
T Consensus 97 ~g~~~~A~~~l~ 108 (112)
T d1hxia_ 97 EHNANAALASLR 108 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999998775
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=6.8e-12 Score=103.59 Aligned_cols=92 Identities=16% Similarity=-0.013 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 210 LGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 210 l~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
+...|..++ ..|+|++|+.+|++|++++|+++.++..+|.+++. .|++++|+..|+++|+++|++..+|..+|.++..
T Consensus 13 l~~~gn~~~-~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~-~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~ 90 (159)
T d1a17a_ 13 LKTQANDYF-KAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLR-TECYGYALGDATRAIELDKKYIKGYYRRAASNMA 90 (159)
T ss_dssp HHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHh-ccccchHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 334576655 68999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred cCCchHHHhhhhhc
Q 020109 290 AGEDEEEEQDNEEG 303 (331)
Q Consensus 290 lG~~eEa~~~~e~~ 303 (331)
+|++++|...++..
T Consensus 91 ~g~~~eA~~~~~~a 104 (159)
T d1a17a_ 91 LGKFRAALRDYETV 104 (159)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999877633
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=1.5e-10 Score=92.97 Aligned_cols=91 Identities=10% Similarity=0.112 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHH
Q 020109 209 LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC-------YVLA 281 (331)
Q Consensus 209 al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna-------~vl~ 281 (331)
.+-.+|..++ ..++|++|+++|.+||.++|+++.++..+|.++.. +|++++|+.+|++||+++|.+. .++.
T Consensus 6 ~~k~~G~~~~-~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~-~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~ 83 (128)
T d1elra_ 6 KEKELGNDAY-KKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFE-KGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (128)
T ss_dssp HHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHH-cCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4456788876 68999999999999999999999999999999999 9999999999999999998765 3566
Q ss_pred HHHHHHHHcCCchHHHhhhh
Q 020109 282 SYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 282 ~lA~~L~klG~~eEa~~~~e 301 (331)
.+|.++..++++++|...++
T Consensus 84 ~lg~~~~~~~~~~~A~~~~~ 103 (128)
T d1elra_ 84 RIGNSYFKEEKYKDAIHFYN 103 (128)
T ss_dssp HHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHH
Confidence 77888888889999987665
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.14 E-value=3.4e-11 Score=109.05 Aligned_cols=118 Identities=10% Similarity=0.065 Sum_probs=102.3
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHcCCH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV-RGDFAKAEELCGRAILANPSDGNILS-LYADLIWQAHKDA 259 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~-~GdyeeAee~~erAL~ldP~d~~vL~-~lA~ll~~~~Gd~ 259 (331)
.+...+.+++|+.+|+++|+.+|+++.++..++.++... .+++++|..++++++.++|.+..++. ..+.++.. .+++
T Consensus 82 ~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~-~~~~ 160 (334)
T d1dcea1 82 PEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQA-AVAP 160 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT-CCCH
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHh-cccc
Confidence 445556789999999999999999999999999876422 24689999999999999999999876 45566666 8999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhh
Q 020109 260 SRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDN 300 (331)
Q Consensus 260 deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~ 300 (331)
++|+.+++++++++|.+..+|..++.++..+|++++|....
T Consensus 161 ~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 161 AEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp HHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 99999999999999999999999999999999998876443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2e-10 Score=88.29 Aligned_cols=81 Identities=12% Similarity=0.088 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Q 020109 207 ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD-------GNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYV 279 (331)
Q Consensus 207 peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d-------~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~v 279 (331)
++-++.+|.+++ ..|+|.+|+.+|++|+++.|.+ +.++..+|.++++ .|++++|+++|++||+++|+++.+
T Consensus 5 addc~~lG~~~~-~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~-~g~~~~A~~~y~~aL~l~P~~~~a 82 (95)
T d1tjca_ 5 AEDSFELGKVAY-TEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQ-QGDLDKALLLTKKLLELDPEHQRA 82 (95)
T ss_dssp HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHh-cCChHHHHHHHHHHHHhCcCCHHH
Confidence 344566777765 4677777777777777775543 5667777887777 788888888888888888888777
Q ss_pred HHHHHHHHHH
Q 020109 280 LASYAKFLWD 289 (331)
Q Consensus 280 l~~lA~~L~k 289 (331)
+.+++.+...
T Consensus 83 ~~Nl~~~~~~ 92 (95)
T d1tjca_ 83 NGNLKYFEYI 92 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777666543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.12 E-value=2.9e-10 Score=95.62 Aligned_cols=85 Identities=12% Similarity=-0.028 Sum_probs=77.5
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA 255 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~ 255 (331)
..|+|.+|.+.+++++|+.+++++|.++|+++.+++.+|.+++ ..|++++|..+|++|++++|+|+.+...++.+...
T Consensus 65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~-~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~- 142 (170)
T d1p5qa1 65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHL-AVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR- 142 (170)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHH-HhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Confidence 5689999999999999999999999999999999999999976 78999999999999999999999999999998766
Q ss_pred cCCHHHH
Q 020109 256 HKDASRA 262 (331)
Q Consensus 256 ~Gd~deA 262 (331)
..+..+.
T Consensus 143 ~~~~~~~ 149 (170)
T d1p5qa1 143 IRRQLAR 149 (170)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5554444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.10 E-value=2e-10 Score=95.64 Aligned_cols=86 Identities=13% Similarity=-0.012 Sum_probs=78.2
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...|+|.+|.+.+++++|+.+|++||+++|+++.+++++|.++. ..|++++|+++|++|++++|+|..+...++.+...
T Consensus 79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~-~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK 157 (169)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999975 68999999999999999999999999999988776
Q ss_pred HcCCHHHH
Q 020109 255 AHKDASRA 262 (331)
Q Consensus 255 ~~Gd~deA 262 (331)
...+.++
T Consensus 158 -l~~~~~~ 164 (169)
T d1ihga1 158 -IKAQKDK 164 (169)
T ss_dssp -HHHHHHH
T ss_pred -HHHHHHH
Confidence 5555444
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.09 E-value=2.7e-10 Score=95.23 Aligned_cols=96 Identities=10% Similarity=-0.014 Sum_probs=82.6
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...|+|.+|.+.+++++|+.+|+++|.++|++..+++++|.++. ..|++++|+.+|++|+.++|+++.++..++.+...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~-~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQL-LMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999999999999999999999975 78999999999999999999999999999998876
Q ss_pred HcCCHH-HHHHHHHHHHHh
Q 020109 255 AHKDAS-RAESYFDQAVKS 272 (331)
Q Consensus 255 ~~Gd~d-eAieyferALel 272 (331)
.+++. +..+.|.++++.
T Consensus 145 -~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 145 -AKEHNERDRRTYANMFKK 162 (168)
T ss_dssp -HHHHHHHHHHHHHHHHHH
T ss_pred -HHhHHHHHHHHHHHHHhh
Confidence 54444 344555555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.08 E-value=3.1e-10 Score=102.40 Aligned_cols=127 Identities=14% Similarity=0.145 Sum_probs=112.7
Q ss_pred cccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 174 GFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNAL-LLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 174 ~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npe-al~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.+...|+.++...++++.|...|+++|..+|.+.. ++..|+.++. ..+++++|.++|++|++..|.+..++..+|.+.
T Consensus 100 ~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~-~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e 178 (308)
T d2onda1 100 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFAR-RAEGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHH-HHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 45677899999999999999999999999998754 6788888864 678999999999999999999999999999877
Q ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
+...++.+.|...|+++++..|+++.+|..++.++...|+.+.|....+
T Consensus 179 ~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe 227 (308)
T d2onda1 179 YYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFE 227 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 6636899999999999999999999999999999999999999887776
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.05 E-value=6.3e-10 Score=100.35 Aligned_cols=126 Identities=11% Similarity=0.058 Sum_probs=113.8
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
..-.|+.++...++++.|..+|++|++..|.+...+..+|.+.+...++.+.|..+|++++..+|+++.++..|+.++..
T Consensus 136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~ 215 (308)
T d2onda1 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSH 215 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999998766567899999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 255 AHKDASRAESYFDQAVKSAPDD----CYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdn----a~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.|++++|..+|++|++..|.+ ..+|..+..+....|+.+.+....+
T Consensus 216 -~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~ 265 (308)
T d2onda1 216 -LNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEK 265 (308)
T ss_dssp -TCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred -cCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999999987744 4589999999999999888876554
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.04 E-value=9.2e-10 Score=98.63 Aligned_cols=126 Identities=13% Similarity=-0.003 Sum_probs=91.3
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGN------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPS------DG 242 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~n------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~------d~ 242 (331)
.+.|+|.+|...+++++|+.+|++++++.+.+ ..++..+|.++....+++++|+++|++|+.+.+. ..
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 46778888888888888888888888875554 4455666666543358888888888888766432 23
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCchHHHhhhh
Q 020109 243 NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDC-------YVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 243 ~vL~~lA~ll~~~~Gd~deAieyferALeldPdna-------~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++..+|.++.. .|+|++|+++|+++++..+.+. .++...+.++...++++.|...++
T Consensus 159 ~~~~~la~~~~~-~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~ 223 (290)
T d1qqea_ 159 KCFIKCADLKAL-DGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQ 223 (290)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHH-cChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 456777888888 8888888888888888877553 345677777788888888876655
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.03 E-value=3.3e-10 Score=93.47 Aligned_cols=95 Identities=12% Similarity=-0.035 Sum_probs=81.7
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------
Q 020109 180 NNYSNNNHGSSSTDAYYEKMIEANPGNA------------LLLGNYARFLKEVRGDFAKAEELCGRAILANPS------- 240 (331)
Q Consensus 180 A~~y~~~gd~ekA~e~yekALeldP~np------------eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~------- 240 (331)
|..++..|+|++|+..|++||+++|+.+ .++.++|.++. ..|++++|.+.++++|.+.|.
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~-~lg~~~~A~~~~~~al~~~~~~~~~~~~ 94 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALA-GLRSFDEALHSADKALHYFNRRGELNQD 94 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHH-HcCccchhhHhhhhhhhccccccccccc
Confidence 6778888999999999999999998754 56778998865 689999999999999987552
Q ss_pred ----CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Q 020109 241 ----DGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDD 276 (331)
Q Consensus 241 ----d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdn 276 (331)
...++..+|.++.. .|++++|++.|++|+++.|..
T Consensus 95 ~~~~~~~a~~~~g~~~~~-lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 95 EGKLWISAVYSRALALDG-LGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHC
T ss_pred ccchhHHHHhhhHHHHHH-HHHHHHHHHHHHHHHHhhHHh
Confidence 24467889999999 999999999999999997643
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.03 E-value=5e-10 Score=100.37 Aligned_cols=129 Identities=9% Similarity=-0.025 Sum_probs=106.0
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANP------GNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GN 243 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP------~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~~ 243 (331)
..+.|++|...+++++|..+|++|+++.. .-...+.++|.++ ...+++++|.++|++|+.+.+.+ ..
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y-~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 118 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCF-KSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHhhHHhhhcccchhHHH
Confidence 55678899999999999999999999732 2245677888885 47899999999999999987766 56
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCchHHHhhhhhccc
Q 020109 244 ILSLYADLIWQAHKDASRAESYFDQAVKSAPD------DCYVLASYAKFLWDAGEDEEEEQDNEEGQH 305 (331)
Q Consensus 244 vL~~lA~ll~~~~Gd~deAieyferALeldPd------na~vl~~lA~~L~klG~~eEa~~~~e~~~~ 305 (331)
++..+|.++....+++++|+++|++|+++.+. ...++..+|.++..+|++++|...+++...
T Consensus 119 ~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 77788888766359999999999999988542 245688999999999999999988775433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.03 E-value=4.5e-10 Score=92.83 Aligned_cols=79 Identities=16% Similarity=0.051 Sum_probs=73.9
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...|+|.+|.+.+++++|+.+|++||+++|.+..+++++|.+++ ..|++++|..+|++|++++|+|+.+...+..+.-+
T Consensus 69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~-~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k 147 (153)
T d2fbna1 69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANM-YFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 147 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999976 68999999999999999999999999988887655
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.01 E-value=5.4e-09 Score=94.22 Aligned_cols=119 Identities=12% Similarity=0.004 Sum_probs=99.5
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEV---------RGDFAKAEELCGRAILANPSDGNILSLYADLI 252 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~---------~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll 252 (331)
.....+..++|+++|+++|+.+|+++.+|...+.++... .+++.+|..+|+++++.+|+++.++..+++++
T Consensus 38 ~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~ 117 (334)
T d1dcea1 38 KRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 117 (334)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHH
Confidence 333434558999999999999999999987776664322 24588999999999999999999999999998
Q ss_pred HHHcC--CHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHcCCchHHHhhhh
Q 020109 253 WQAHK--DASRAESYFDQAVKSAPDDCYVLA-SYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 253 ~~~~G--d~deAieyferALeldPdna~vl~-~lA~~L~klG~~eEa~~~~e 301 (331)
.. .+ ++++|+.+++++++++|.+..++. ..+.++...+++++|...++
T Consensus 118 ~~-~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~ 168 (334)
T d1dcea1 118 SR-LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (334)
T ss_dssp HT-CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HH-hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHH
Confidence 77 65 489999999999999999998864 66788888899999987665
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=6.9e-10 Score=85.18 Aligned_cols=77 Identities=13% Similarity=0.090 Sum_probs=69.1
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGN-------ALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLY 248 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~n-------peal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~l 248 (331)
.+++|..+.+.++|++|+.+|++|+++.|.+ +.++.++|.+++ ..|++++|+.+|++||+++|+++.++.++
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~-~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVY-QQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHH-hcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 4689999999999999999999999997654 678899999976 68999999999999999999999999998
Q ss_pred HHHHH
Q 020109 249 ADLIW 253 (331)
Q Consensus 249 A~ll~ 253 (331)
+.+..
T Consensus 87 ~~~~~ 91 (95)
T d1tjca_ 87 KYFEY 91 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.97 E-value=7.2e-10 Score=89.56 Aligned_cols=88 Identities=13% Similarity=-0.016 Sum_probs=76.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 020109 212 NYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAH---KDASRAESYFDQAVKSAPDD--CYVLASYAKF 286 (331)
Q Consensus 212 ~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~---Gd~deAieyferALeldPdn--a~vl~~lA~~ 286 (331)
+++..+. ..+++++|++.|++|+.++|+++.+++.||+++.+ . +++++|+.+|+++++.+|.+ ..+++.+|.+
T Consensus 4 ~l~n~~~-~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~-s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELV-SVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVR-TRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTT-SSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH-hcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 3444443 56899999999999999999999999999999975 4 45668999999999999855 4589999999
Q ss_pred HHHcCCchHHHhhhh
Q 020109 287 LWDAGEDEEEEQDNE 301 (331)
Q Consensus 287 L~klG~~eEa~~~~e 301 (331)
|..+|++++|...++
T Consensus 82 y~~~g~~~~A~~~~~ 96 (122)
T d1nzna_ 82 NYRLKEYEKALKYVR 96 (122)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHH
Confidence 999999999998776
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=6.3e-10 Score=108.23 Aligned_cols=115 Identities=17% Similarity=0.014 Sum_probs=86.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ 254 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~ 254 (331)
...|+|..+.+.++++.|...|++++..+|. .++.++|.++ ...+++++|+.+|++|+.++|+++.++..+|.++..
T Consensus 122 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~-~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~ 198 (497)
T d1ya0a1 122 KSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIA-RYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASS 198 (497)
T ss_dssp ---------------------CCHHHHHHHH--HHHHHHHHHH-HHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHH
T ss_pred HHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHH-HHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 4567777888889999999999999998874 5677889886 478999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc
Q 020109 255 AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGED 293 (331)
Q Consensus 255 ~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~ 293 (331)
.|++.+|+.+|.||+.++|..+.++.+++.++.+..+.
T Consensus 199 -~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~~ 236 (497)
T d1ya0a1 199 -KGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALES 236 (497)
T ss_dssp -TTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTTS
T ss_pred -cCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999988776543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.91 E-value=1.1e-09 Score=90.30 Aligned_cols=74 Identities=14% Similarity=0.113 Sum_probs=66.2
Q ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 219 EVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---------AHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 219 ~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~---------~~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
+..+.+++|++.|++|++++|+++.++..+|.++.. ..+++++|+.+|++|++++|++..+|+++|.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 345678999999999999999999999999999874 14667899999999999999999999999999988
Q ss_pred cCC
Q 020109 290 AGE 292 (331)
Q Consensus 290 lG~ 292 (331)
+|+
T Consensus 88 ~g~ 90 (145)
T d1zu2a1 88 FAF 90 (145)
T ss_dssp HHH
T ss_pred ccc
Confidence 764
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.90 E-value=6.5e-10 Score=101.20 Aligned_cols=119 Identities=14% Similarity=0.049 Sum_probs=102.1
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
-....|++++|+..|+++|+.+|+|+.++..|+.+++ ..|++++|.+.|+++++++|++..++..|+.++.. .++.++
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~-~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a-~~~~~~ 82 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLC-IDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-AQARKD 82 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh-ccccHH
Confidence 3456799999999999999999999999999999986 68999999999999999999999999999999887 777777
Q ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 262 AESYFDQAVKS-APDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 262 AieyferALel-dPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
+...+.+.+.. .|+....+...+..+...|++++|+...++
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~ 124 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQ 124 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 77665554443 466667777889999999999999976653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1.3e-08 Score=87.51 Aligned_cols=122 Identities=11% Similarity=0.125 Sum_probs=101.3
Q ss_pred cHHHHHHhCCCcHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHH
Q 020109 178 SNNNYSNNNHGSSSTDAYYEKMIEANPGNA-----LLLGNYARFLKEVRGDFAKAEELCGRAILANPSD------GNILS 246 (331)
Q Consensus 178 N~A~~y~~~gd~ekA~e~yekALeldP~np-----eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d------~~vL~ 246 (331)
..|..+...|++++|+.+|+++|+..|.+. .++..+|.++. ..|++++|+.+|++++.+.+.. ..++.
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 95 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDVWHYALWSLI 95 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHH
Confidence 468889999999999999999999999874 46677888865 6899999999999999876543 34566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 247 LYADLIWQAHKDASRAESYFDQAVKSAP--------DDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 247 ~lA~ll~~~~Gd~deAieyferALeldP--------dna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
.++.++.. .+++.+|+.++.+++++.+ ....++..++.++...++++++...++
T Consensus 96 ~~~~~~~~-~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~ 157 (366)
T d1hz4a_ 96 QQSEILFA-QGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASAR 157 (366)
T ss_dssp HHHHHHHH-TTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHH
Confidence 77888888 9999999999999998643 123467788999999999999987665
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.81 E-value=9.7e-10 Score=106.87 Aligned_cols=116 Identities=9% Similarity=-0.018 Sum_probs=75.7
Q ss_pred HHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHH
Q 020109 182 YSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASR 261 (331)
Q Consensus 182 ~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~de 261 (331)
++...+.|+.|+..|++++..+|++...+.+++.++. ..+++++|...+.+++..+|. .++..+|.++.. .+++++
T Consensus 95 l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~-~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~-~~~~~~ 170 (497)
T d1ya0a1 95 LEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISN-KQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARY-RNQTSQ 170 (497)
T ss_dssp HHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHH--HHHHHHHHHHHH-TTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHH-hCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHH-cccHHH
Confidence 3445677889999999999999999999999998864 689999999999999998875 577889999999 999999
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 262 AESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 262 AieyferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
|+.+|++|++++|++...+.++|.++...|+..+|..-+.
T Consensus 171 A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ 210 (497)
T d1ya0a1 171 AESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999999999999999999999999999986543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.70 E-value=7.3e-08 Score=82.24 Aligned_cols=94 Identities=7% Similarity=-0.025 Sum_probs=73.9
Q ss_pred cccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----------------------LLLGNYARFLKEVRGDFAKAEELCGR 233 (331)
Q Consensus 176 ~~N~A~~y~~~gd~ekA~e~yekALeldP~np----------------------eal~~yA~lLy~~~GdyeeAee~~er 233 (331)
+.+.|..+...|++++|..+|.+||.+.+++. .++.+++.++. ..|++++|+.++++
T Consensus 14 ~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g~~~~Al~~~~~ 92 (179)
T d2ff4a2 14 EKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEA 92 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHH
Confidence 34567888899999999999999999988764 23455666643 56888888888888
Q ss_pred HHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 020109 234 AILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVK 271 (331)
Q Consensus 234 AL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALe 271 (331)
++.++|.+..++..++.+++. .|++++|+..|+++.+
T Consensus 93 al~~~P~~e~~~~~l~~al~~-~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 93 LTFEHPYREPLWTQLITAYYL-SDRQSDALGAYRRVKT 129 (179)
T ss_dssp HHHHSTTCHHHHHHHHHHHHT-TTCHHHHHHHHHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHH-hcCHHHHHHHHHHHHH
Confidence 888888888888888888887 8888888888887743
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=98.68 E-value=3.7e-08 Score=80.76 Aligned_cols=86 Identities=19% Similarity=0.072 Sum_probs=73.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------
Q 020109 214 ARFLKEVRGDFAKAEELCGRAILANPSDG------------NILSLYADLIWQAHKDASRAESYFDQAVKSAPD------ 275 (331)
Q Consensus 214 A~lLy~~~GdyeeAee~~erAL~ldP~d~------------~vL~~lA~ll~~~~Gd~deAieyferALeldPd------ 275 (331)
|...+ ..|+|++|++.|++||.++|+.+ .++..+|.+++. .|++++|+..+++++++.|.
T Consensus 16 g~~~~-~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~-lg~~~~A~~~~~~al~~~~~~~~~~~ 93 (156)
T d2hr2a1 16 AQRQL-VAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG-LRSFDEALHSADKALHYFNRRGELNQ 93 (156)
T ss_dssp HHHHH-HHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHH-HcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHH-cCccchhhHhhhhhhhcccccccccc
Confidence 55544 57999999999999999998754 578889999999 99999999999999987542
Q ss_pred -----CHHHHHHHHHHHHHcCCchHHHhhhh
Q 020109 276 -----DCYVLASYAKFLWDAGEDEEEEQDNE 301 (331)
Q Consensus 276 -----na~vl~~lA~~L~klG~~eEa~~~~e 301 (331)
...+++++|.+|..+|++++|...++
T Consensus 94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~ 124 (156)
T d2hr2a1 94 DEGKLWISAVYSRALALDGLGRGAEAMPEFK 124 (156)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccchhHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 23468899999999999999997765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=1.4e-07 Score=80.78 Aligned_cols=122 Identities=20% Similarity=0.119 Sum_probs=98.0
Q ss_pred ccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHH
Q 020109 175 FSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNA----LLLGNYARFLKEVRGDFAKAEELCGRAILA------NPSDGNI 244 (331)
Q Consensus 175 ~~~N~A~~y~~~gd~ekA~e~yekALeldP~np----eal~~yA~lLy~~~GdyeeAee~~erAL~l------dP~d~~v 244 (331)
.....+.++...+++++|..++++++...|.+. ..+.++|.++. ..|++++|..++++++.. .|....+
T Consensus 215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 293 (366)
T d1hz4a_ 215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI-LLGEFEPAEIVLEELNENARSLRLMSDLNRN 293 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHhhcccChHHHHH
Confidence 356678899999999999999999999888753 34556787754 689999999999999843 4556778
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHcCCchHHHh
Q 020109 245 LSLYADLIWQAHKDASRAESYFDQAVKSAPD---------DCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 245 L~~lA~ll~~~~Gd~deAieyferALeldPd---------na~vl~~lA~~L~klG~~eEa~~ 298 (331)
+..+|.+++. .|++++|+++|++|+++.+. ....+..+...+...++.+|++.
T Consensus 294 ~~~la~~~~~-~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 294 LLLLNQLYWQ-AGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHH-HTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHH-CCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 8999999999 99999999999999998542 33455666677777788777764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.46 E-value=7.4e-07 Score=75.77 Aligned_cols=93 Identities=9% Similarity=-0.045 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----------------------HHHHHHHHHHHHHcCCHHHHHHH
Q 020109 208 LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDG----------------------NILSLYADLIWQAHKDASRAESY 265 (331)
Q Consensus 208 eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~----------------------~vL~~lA~ll~~~~Gd~deAiey 265 (331)
+.+...|..+. ..|++++|.++|.+|+.+.+.++ .++..++.++.. .|++++|+.+
T Consensus 12 ~~~~~~g~~~~-~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~-~g~~~~Al~~ 89 (179)
T d2ff4a2 12 VAEKTAGVHAA-AAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIA-CGRASAVIAE 89 (179)
T ss_dssp HHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHH-TTCHHHHHHH
T ss_pred HHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCchHHHHH
Confidence 34555666654 68999999999999999987553 456778999999 9999999999
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHhhhhh
Q 020109 266 FDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQDNEE 302 (331)
Q Consensus 266 ferALeldPdna~vl~~lA~~L~klG~~eEa~~~~e~ 302 (331)
++++++++|.+..+|..++.+|+..|++.+|...++.
T Consensus 90 ~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~ 126 (179)
T d2ff4a2 90 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRR 126 (179)
T ss_dssp HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9999999999999999999999999999999977663
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.36 E-value=4.3e-07 Score=82.13 Aligned_cols=78 Identities=24% Similarity=0.272 Sum_probs=72.5
Q ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCchHHHh
Q 020109 220 VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLASYAKFLWDAGEDEEEEQ 298 (331)
Q Consensus 220 ~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~lA~~L~klG~~eEa~~ 298 (331)
..|++++|+..|+++|+.+|+|+.++..++.++.. .|++++|++.|+++++++|++..++..++.++...+..+++..
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~-~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPKDASLRSSFIELLCI-DGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 47999999999999999999999999999999999 9999999999999999999999999999999887777666543
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.12 E-value=5.9e-06 Score=67.52 Aligned_cols=81 Identities=16% Similarity=-0.012 Sum_probs=67.2
Q ss_pred CHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 206 NALLLGNYARFLKEV--RGDFAKAEELCGRAILANPSDG-NILSLYADLIWQAHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 206 npeal~~yA~lLy~~--~GdyeeAee~~erAL~ldP~d~-~vL~~lA~ll~~~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
.+...++||.++... ..+..+|+.+++.++..+|.+. ++++.+|..+++ .|+|++|..+++++|+++|++..+..-
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyk-lgdy~~A~~~~~~~L~ieP~n~qA~~L 112 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYK-LGEYSMAKRYVDTLFEHERNNKQVGAL 112 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-HTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHccCCCcHHHHHH
Confidence 367778888776421 2466789999999999999775 899999999999 999999999999999999999988665
Q ss_pred HHHHH
Q 020109 283 YAKFL 287 (331)
Q Consensus 283 lA~~L 287 (331)
.-.+.
T Consensus 113 ~~~Ie 117 (124)
T d2pqrb1 113 KSMVE 117 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=98.08 E-value=2.3e-05 Score=62.20 Aligned_cols=106 Identities=15% Similarity=0.100 Sum_probs=84.4
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---cCCHHHH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQA---HKDASRA 262 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~~---~Gd~deA 262 (331)
.+|+++|+.+|+++.+.+ ++.+.+.++.. ...++++|.++|++|.+. +++.+...+|.+++.- ..|+++|
T Consensus 6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~~---~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 6 KKDLKKAIQYYVKACELN--EMFGCLSLVSN---SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTTHHHHHHTC---TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred ccCHHHHHHHHHHHHHCC--Chhhhhhhccc---cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHH
Confidence 368899999999998874 66667777644 458999999999999876 5899999999988751 3678999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHH----cCCchHHHhhh
Q 020109 263 ESYFDQAVKSAPDDCYVLASYAKFLWD----AGEDEEEEQDN 300 (331)
Q Consensus 263 ieyferALeldPdna~vl~~lA~~L~k----lG~~eEa~~~~ 300 (331)
+++|+++.+. .++...+.+|.+|.. ..+.++|..-+
T Consensus 79 ~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~ 118 (133)
T d1klxa_ 79 AQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTF 118 (133)
T ss_dssp HHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred HHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHH
Confidence 9999999986 468888999999887 34566665433
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.06 E-value=2.1e-05 Score=67.52 Aligned_cols=111 Identities=17% Similarity=0.141 Sum_probs=89.1
Q ss_pred CcccccHHHHHHhCCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 020109 173 SGFSGSNNNYSNNNHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSDGNILSLYA 249 (331)
Q Consensus 173 ~~~~~N~A~~y~~~gd~ekA~e~yekALeldP~npeal~~yA~lLy~---~~GdyeeAee~~erAL~ldP~d~~vL~~lA 249 (331)
+....|+|..++.++++++|+.+|++|.+. +++.+.++||.++.. ...++.+|..+++++...+ ++.+...++
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~ 77 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence 445778999999999999999999999765 689999999998643 2569999999999997665 888888888
Q ss_pred HHHHHH---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 020109 250 DLIWQA---HKDASRAESYFDQAVKSAPDDCYVLASYAKFLWD 289 (331)
Q Consensus 250 ~ll~~~---~Gd~deAieyferALeldPdna~vl~~lA~~L~k 289 (331)
.++..- ..+.++|..+|+++.+..+ ......++..+..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~--~~a~~~l~~~~~~ 118 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKY--AEGCASLGGIYHD 118 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhh--hhHHHhhcccccC
Confidence 877641 3788999999999998765 4445566666664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.95 E-value=2.3e-05 Score=63.90 Aligned_cols=75 Identities=5% Similarity=-0.101 Sum_probs=64.1
Q ss_pred cccHHHHHHhCC---CcHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 020109 176 SGSNNNYSNNNH---GSSSTDAYYEKMIEANPGNA-LLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADL 251 (331)
Q Consensus 176 ~~N~A~~y~~~g---d~ekA~e~yekALeldP~np-eal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~l 251 (331)
..|||-++.+.. +.++|+.+++.++..+|.+. +.++.+|..++ ..|+|++|.++++++|+++|+|..++...-.+
T Consensus 38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yy-klgdy~~A~~~~~~~L~ieP~n~qA~~L~~~I 116 (124)
T d2pqrb1 38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCY-KLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 116 (124)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHccCCCcHHHHHHHHHH
Confidence 468998888764 45799999999999999875 79999999877 57999999999999999999999887655444
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.72 E-value=0.0002 Score=56.46 Aligned_cols=85 Identities=16% Similarity=0.151 Sum_probs=71.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCH
Q 020109 186 NHGSSSTDAYYEKMIEANPGNALLLGNYARFLKE---VRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---AHKDA 259 (331)
Q Consensus 186 ~gd~ekA~e~yekALeldP~npeal~~yA~lLy~---~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~---~~Gd~ 259 (331)
..++++|..+|+++.+. +++.+.+.+|.++.. ...|+.+|.++|++|.+. .++.+...+|.++.. ...|+
T Consensus 36 ~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~ 111 (133)
T d1klxa_ 36 QINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNE 111 (133)
T ss_dssp TSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCH
T ss_pred ccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCH
Confidence 35789999999998875 689999999988532 135899999999999886 589999999999876 23689
Q ss_pred HHHHHHHHHHHHhCC
Q 020109 260 SRAESYFDQAVKSAP 274 (331)
Q Consensus 260 deAieyferALeldP 274 (331)
++|+.+|++|.+...
T Consensus 112 ~~A~~~~~~Aa~~G~ 126 (133)
T d1klxa_ 112 KQAVKTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHCCC
Confidence 999999999999865
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.58 E-value=0.00048 Score=58.69 Aligned_cols=88 Identities=14% Similarity=0.104 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 020109 206 NALLLGNYARFLKEVRGDFAKAEELCGRAILANPSDGNILSLYADLIWQ---AHKDASRAESYFDQAVKSAPDDCYVLAS 282 (331)
Q Consensus 206 npeal~~yA~lLy~~~GdyeeAee~~erAL~ldP~d~~vL~~lA~ll~~---~~Gd~deAieyferALeldPdna~vl~~ 282 (331)
||++++++|.+++ ..+|+.+|+++|++|.+. +|+.+...+|.+++. ...++.+|..++.++.+.. ++.....
T Consensus 1 ~p~~~~~lG~~~~-~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~ 75 (265)
T d1ouva_ 1 DPKELVGLGAKSY-KEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHL 75 (265)
T ss_dssp CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred CHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhc
Confidence 6889999998876 689999999999999775 589999999999885 2469999999999988765 6677778
Q ss_pred HHHHHHHc----CCchHHHh
Q 020109 283 YAKFLWDA----GEDEEEEQ 298 (331)
Q Consensus 283 lA~~L~kl----G~~eEa~~ 298 (331)
++.++... .+.+.+..
T Consensus 76 l~~~~~~~~~~~~~~~~a~~ 95 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQ 95 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHH
T ss_pred cccccccccccchhhHHHHH
Confidence 88777653 34455543
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