Citrus Sinensis ID: 020116

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-
Protein Sequence
MTEEKEEEELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYVGHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG
Secondary Structure (PSIPRED)
ccHHHHHHHccccccccccccccccccccccccccccccEEEEEccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEEEccccccccHHHHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccEEEEEEEEEcccccccccEEEEEEccccccccccccEEEHHccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccHHHHHHHEcccccccccccHHHHcccccEEEEccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHcEEHHHccccHcccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEccccccccHHHHHHHHHHHHcccccccccHHHcccccHHHccccHHHHHHHHHHHHHHHHHcccccccccEEEEEEEcccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHcEEccccccEEEEEEEccccccccccEEEEEEEccHHHHcccccEEEEEcccccccccc
Coil and Loop (DISEMBL)
mteekeeeelkpweqhsrvisiprfdynspssllqrshsgflLTCTIKREKSATKEAISILHKYVghnniensqrlessntagdskrrkvctddmggkcadgaeinsieedsagglqknechssvktdtntetdfdMSLVKLTRNGLllltfprehspntiNIVSNIFQslgsgslkspvwchrifpiqatCVLKEKELQATVSKLVLQFVNDeqnklsrpvkfavgynrrgfeekqnkipkdtkdsdvsalldrnkCFTIVAAAVKEVVsdsavdlkspelSVLVEllpisglpseLLVVGVsilpqklvttkprlSIRALVSGTNAKNG
Flexible Loop (DISEMBL)
mteekeeeelkpweqhsrvisiPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYvghnniensqrlessntagdskrrkvCTDDMGGKCADGAEINSIeedsagglqknechssvktdtntetdfdmsLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFvndeqnklsrpvkfavgynrrgfeekqnkipkdtkdsdvsaLLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILpqklvttkprlsiralvsgtnakng
Low Complexity Region (SEG)
MTeekeeeeLKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYVGHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG
Disordered region (IsUnstruct)
************************F***********SHSGFLLTCTIKREKSATKEAISILHKYVGHN******************************************************************FDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNR********************ALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRAL*********
Disordered Region (DISOPRED)
****************SRVISIPRFDYNSP**LLQRSHSGFLLTCTIKREKSATKEAISILHKYVGH**********************************************************************SLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVND**********FAVGYNRRGFE***********DSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIR***********
Disordered Region (DISEMBL)
**************QHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYVGHNNIENSQ*******************DMGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG
Disordered Region (DISPRO)
********ELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYVGHNN************************DM*************************************TDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEK*********DSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVS*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTEEKEEEELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYVGHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKNG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
225424542	337	PREDICTED: uncharacterized protein LOC10	0.993	0.976	0.614	1e-107
255561747	336	conserved hypothetical protein [Ricinus	0.921	0.907	0.625	1e-106
356575470	320	PREDICTED: uncharacterized protein LOC10	0.939	0.971	0.579	1e-97
42561854	348	uncharacterized protein [Arabidopsis tha	0.963	0.916	0.570	1e-93
24030215	373	unknown protein [Arabidopsis thaliana]	0.963	0.855	0.570	2e-93
388515009	369	unknown [Lotus japonicus]	0.951	0.853	0.557	5e-92
297849234	348	hypothetical protein ARALYDRAFT_471019 [	0.954	0.908	0.562	2e-91
449487893	345	PREDICTED: uncharacterized protein LOC10	0.939	0.901	0.577	5e-91
357136974	359	PREDICTED: uncharacterized protein LOC10	0.960	0.885	0.517	1e-83
283132369	336	hypothetical protein [Lotus japonicus]	0.854	0.842	0.527	8e-82

>gi|225424542|ref|XP_002285300.1| PREDICTED: uncharacterized protein LOC100267955 [Vitis vinifera] gi|296081413|emb|CBI16846.3| unnamed protein product [Vitis vinifera]

 Score =  394 bits (1013), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/335 (61%), Positives = 253/335 (75%), Gaps = 6/335 (1%)

Query: 1   MTEEKEEEELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISI 60
           M+EE+ EE +KPWEQHS VISIPRFDYN+PSSLL  SHSGFL+TCTIKREKSATKEA+ I
Sbjct: 1   MSEEEREEGMKPWEQHSAVISIPRFDYNAPSSLLDHSHSGFLVTCTIKREKSATKEAMPI 60

Query: 61  LHKYVGHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAE----INSIEEDSAGGL 116
           L KYVG  +  +S+ LESS+    +KRRK+CT+++  +C +  E     N+  ED  G L
Sbjct: 61  LEKYVGSFSSCSSESLESSDANATTKRRKICTEEIDEECVNSVENKTASNNCGED-GGEL 119

Query: 117 QKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSL 176
            K+   SS   D   E    +SLVKLTR+GLLL  FPR +S +T+++VS I +SL SGS+
Sbjct: 120 SKDAGVSSANRDAIVENGHVLSLVKLTRSGLLLFVFPRNNSVDTVDVVSQIIRSLQSGSV 179

Query: 177 KSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEK 236
           K P+WCHRIFPIQATC L EKEL   V+KLV+QFVN+EQNK +RP+KFAVGYNRRG EE 
Sbjct: 180 KPPLWCHRIFPIQATCRLDEKELHEVVTKLVVQFVNNEQNKFARPIKFAVGYNRRGIEET 239

Query: 237 QNKIPKDT-KDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLP 295
           + KIPK T +D +  ALLDR KCF++VA AVK  VSDS VDLKSPELSVLVELLP+S +P
Sbjct: 240 EMKIPKSTPRDCNSHALLDRKKCFSVVATAVKGAVSDSVVDLKSPELSVLVELLPLSRVP 299

Query: 296 SELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKN 330
           +  +VV VS+LPQ L+TTKPRL I+AL+S T   N
Sbjct: 300 NGSMVVAVSVLPQNLITTKPRLCIKALLSDTKVGN 334

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561747|ref|XP_002521883.1| conserved hypothetical protein [Ricinus communis] gi|223538921|gb|EEF40519.1| conserved hypothetical protein [Ricinus communis]

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 202/323 (62%), Positives = 240/323 (74%), Gaps = 18/323 (5%)

Query: 10  LKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYVGHNN 69
           +KPWEQH+ +ISIPRFDYN+PS+LL  SHSGFL+TC+IKREKSATKE +SIL KY+G   
Sbjct: 29  MKPWEQHAAIISIPRFDYNAPSALLHNSHSGFLITCSIKREKSATKEVMSILEKYIG--- 85

Query: 70  IENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDT 129
              S   +SSN +   KRRK     MGG CA G E   + ED            S +T T
Sbjct: 86  ---SYTKDSSNGSQGIKRRKTL---MGGTCAQGMESKDVSEDPD--------QVSEETHT 131

Query: 130 NTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQ 189
             ET F +SLVKLTR+GLLLL F  E+SP+   IVSNIFQ + SGSLKSP+WCHRIFPIQ
Sbjct: 132 VEETGFTLSLVKLTRSGLLLLNFVGENSPDATEIVSNIFQRIESGSLKSPLWCHRIFPIQ 191

Query: 190 ATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDT-KDSD 248
           ATC L EKEL+  VSKLVL+F+ND+ NK  RP+K+AVGYNRRG EE Q K  KDT KDS 
Sbjct: 192 ATCCLDEKELRTVVSKLVLRFINDKANKFERPIKYAVGYNRRGIEETQAKNVKDTSKDSA 251

Query: 249 VSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQ 308
           + +LLDRNKCF +VA+AVK+V+SDSAVDLKSPELS+LVELLP+SG+P+  LV  VS+LPQ
Sbjct: 252 LCSLLDRNKCFDVVASAVKDVISDSAVDLKSPELSILVELLPLSGVPNGSLVAAVSVLPQ 311

Query: 309 KLVTTKPRLSIRALVSGTNAKNG 331
            LV+ KPRL I+ LVS  NAK G
Sbjct: 312 NLVSVKPRLCIKPLVSDANAKKG 334

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575470|ref|XP_003555863.1| PREDICTED: uncharacterized protein LOC100797260 [Glycine max]

 Score =  362 bits (930), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 186/321 (57%), Positives = 230/321 (71%), Gaps = 10/321 (3%)

Query: 6   EEEELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYV 65
           EE+ + PWEQHS VI +PRFDYN+PSSLL+ SHSGFL+TCTIKREKSATKEAISILHK++
Sbjct: 3   EEKGMSPWEQHSAVIKLPRFDYNAPSSLLRNSHSGFLITCTIKREKSATKEAISILHKFL 62

Query: 66  GHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSSV 125
           G  +          +T   SKRRK+CT D   +C D       E  +A      +  S V
Sbjct: 63  GSGHYHTLNNPNEEDTT--SKRRKICTQDAAEECFD-------ESPTANSGADGKLSSPV 113

Query: 126 KTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRI 185
           K +   +   ++SLVKLTRNGLLLLTFP    P+T+ IVSNI Q+L SG++  PVWCHRI
Sbjct: 114 KAEAEKDGIANLSLVKLTRNGLLLLTFPINTHPDTVTIVSNIIQALESGTVSLPVWCHRI 173

Query: 186 FPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTK 245
           FPIQATC L EKELQ  VS LV +F+ D+Q+KL RP+KFAVG+NRRG EE      +++ 
Sbjct: 174 FPIQATCNLNEKELQEVVSMLVKKFLADKQDKLERPLKFAVGFNRRGIEE-TTLAKENSN 232

Query: 246 DSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSI 305
           DS   +LLDRNKCF +VA+AV  VV DS VDL+SPELSVLVELLP+SG+P   ++V VS+
Sbjct: 233 DSKAFSLLDRNKCFGVVASAVNHVVEDSVVDLRSPELSVLVELLPLSGVPDASIIVAVSV 292

Query: 306 LPQKLVTTKPRLSIRALVSGT 326
           LP+ LV+TKPRL I+AL S T
Sbjct: 293 LPRNLVSTKPRLCIKALNSNT 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561854|ref|NP_172400.2| uncharacterized protein [Arabidopsis thaliana] gi|14334964|gb|AAK59659.1| unknown protein [Arabidopsis thaliana] gi|332190304|gb|AEE28425.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 187/328 (57%), Positives = 229/328 (69%), Gaps = 9/328 (2%)

Query: 5   KEEEELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKY 64
           +E E L PWEQHS +ISIPRFDY +PSSLL  SHSGFL+TC IKREKSATKE +SIL KY
Sbjct: 27  EEAETLTPWEQHSSIISIPRFDYKAPSSLLHHSHSGFLVTCNIKREKSATKEVMSILGKY 86

Query: 65  VGHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSS 124
           +G  + E  + L S+     SK++KVC  +       G +   +E D+     +N     
Sbjct: 87  IGSMHEEKPEVLNSTA----SKKQKVCAQETE---EGGEKTVPLENDALQETGENPNVED 139

Query: 125 VKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHR 184
           +K   N E +  MSLVKLT++GLLL TFP E+SPNT NIVS +FQS+ SG+LK+P+WCHR
Sbjct: 140 LKL-ANEEHNSLMSLVKLTKSGLLLFTFPVENSPNTTNIVSRVFQSMESGALKAPIWCHR 198

Query: 185 IFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDT 244
           IFP+QATC L EKEL+ TVSKLV +FVND+ N LS+PVKFA GY RRG EE + KI KD 
Sbjct: 199 IFPVQATCGLTEKELRETVSKLVQRFVNDKDNTLSKPVKFAAGYQRRGAEETKGKIRKDA 258

Query: 245 KDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGV 303
            D  V   LLDR KCF  VAA VK++V DS VDLKSPEL VLVELLP+S + S   V  V
Sbjct: 259 SDVLVQCPLLDRIKCFETVAAGVKDIVPDSVVDLKSPELCVLVELLPLSRISSGSFVAAV 318

Query: 304 SILPQKLVTTKPRLSIRALVSGTNAKNG 331
           S+LP +LV+TKP+L I+ LV  +  K G
Sbjct: 319 SVLPHRLVSTKPKLCIKPLVPESKHKKG 346

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24030215|gb|AAN41286.1| unknown protein [Arabidopsis thaliana]

 Score =  348 bits (894), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 187/328 (57%), Positives = 229/328 (69%), Gaps = 9/328 (2%)

Query: 5   KEEEELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKY 64
           +E E L PWEQHS +ISIPRFDY +PSSLL  SHSGFL+TC IKREKSATKE +SIL KY
Sbjct: 52  EEAETLTPWEQHSSIISIPRFDYKAPSSLLHHSHSGFLVTCNIKREKSATKEVMSILGKY 111

Query: 65  VGHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSS 124
           +G  + E  + L S+     SK++KVC  +       G +   +E D+     +N     
Sbjct: 112 IGSMHEEKPEVLNSTA----SKKQKVCAQETE---EGGEKTVPLENDALQETGENPNVED 164

Query: 125 VKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHR 184
           +K   N E +  MSLVKLT++GLLL TFP E+SPNT NIVS +FQS+ SG+LK+P+WCHR
Sbjct: 165 LKL-ANEEHNSLMSLVKLTKSGLLLFTFPVENSPNTTNIVSRVFQSMESGALKAPIWCHR 223

Query: 185 IFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDT 244
           IFP+QATC L EKEL+ TVSKLV +FVND+ N LS+PVKFA GY RRG EE + KI KD 
Sbjct: 224 IFPVQATCGLTEKELRETVSKLVQRFVNDKDNTLSKPVKFAAGYQRRGAEETKGKIRKDA 283

Query: 245 KDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGV 303
            D  V   LLDR KCF  VAA VK++V DS VDLKSPEL VLVELLP+S + S   V  V
Sbjct: 284 SDVLVQCPLLDRIKCFETVAAGVKDIVPDSVVDLKSPELCVLVELLPLSRISSGSFVAAV 343

Query: 304 SILPQKLVTTKPRLSIRALVSGTNAKNG 331
           S+LP +LV+TKP+L I+ LV  +  K G
Sbjct: 344 SVLPHRLVSTKPKLCIKPLVPESKHKKG 371

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388515009|gb|AFK45566.1| unknown [Lotus japonicus]

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 180/323 (55%), Positives = 227/323 (70%), Gaps = 8/323 (2%)

Query: 6   EEEELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYV 65
           E+  + PWEQHS VI + R+DYN+P+SLL  SHSGFL+TCTIKREKSATKEA+SIL K+V
Sbjct: 46  EKAMMTPWEQHSGVIKLSRYDYNTPASLLLHSHSGFLITCTIKREKSATKEALSILEKFV 105

Query: 66  GHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSSV 125
           G  N    +  ++       KR +V T D+GG+C D  E  S+ ++S  G    +  S  
Sbjct: 106 GAFNAGGFECSKNPGEYSSFKRMRVDTQDIGGECLDVKETESVTDNSGDG----KVLSPA 161

Query: 126 KTDTNTETDF-DMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHR 184
           K +   +    D+SLVKLTRNGLLL  +P    P+T+NIVSNI QSL SGS   PVWCHR
Sbjct: 162 KAEAEDKDGVTDLSLVKLTRNGLLLFIYPNNMFPDTVNIVSNIIQSLESGSTSLPVWCHR 221

Query: 185 IFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDT 244
           IFPIQATC L EKE Q  VS LV +F+  +Q KL RP+KFAVGYNRRG E+   K  K+ 
Sbjct: 222 IFPIQATCRLNEKEFQEVVSMLVKKFLASKQGKLERPLKFAVGYNRRGIED--TKFAKEN 279

Query: 245 KD-SDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGV 303
            + S+  +LLDRNKCF++VA+AV +VV DS VDL+SPELS+LVELLP+S +P+  LVV V
Sbjct: 280 SNGSNAFSLLDRNKCFSVVASAVNDVVEDSVVDLRSPELSILVELLPLSRVPNGSLVVAV 339

Query: 304 SILPQKLVTTKPRLSIRALVSGT 326
           S LP+ LV+TKPRL ++AL S T
Sbjct: 340 SALPRNLVSTKPRLCVKALTSNT 362

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849234|ref|XP_002892498.1| hypothetical protein ARALYDRAFT_471019 [Arabidopsis lyrata subsp. lyrata] gi|297338340|gb|EFH68757.1| hypothetical protein ARALYDRAFT_471019 [Arabidopsis lyrata subsp. lyrata]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/329 (56%), Positives = 231/329 (70%), Gaps = 13/329 (3%)

Query: 6   EEEELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYV 65
           E E L PWEQHS +ISIPRFDY +PSSLL  SHSGFL+TCTIKREKSATKE +SIL K++
Sbjct: 28  EAETLPPWEQHSSIISIPRFDYKAPSSLLHHSHSGFLVTCTIKREKSATKEVMSILAKFI 87

Query: 66  GHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSSV 125
           G  + E  Q L S+     SK++K+   ++      G E     ED A  LQ+     +V
Sbjct: 88  GSMHEEKPQVLRSTA----SKKQKLSEQEI----EVGEEKTVPPEDDA--LQETGGDPNV 137

Query: 126 K--TDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCH 183
           +     N E +  MSLVKLT++GLLL TFP E+SP+T NIVS +FQS+ SG+LK+P+WCH
Sbjct: 138 EDLKLANEEHNSLMSLVKLTKSGLLLFTFPIENSPDTTNIVSRVFQSMESGALKAPIWCH 197

Query: 184 RIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKD 243
           RIFP+QATC L EKEL+ TVSKLV +FV+++ N LS+PVKFA GY RRG EE + KI K+
Sbjct: 198 RIFPVQATCGLTEKELRETVSKLVQRFVDNKDNTLSKPVKFAAGYQRRGVEETKGKIQKE 257

Query: 244 TKDS-DVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVG 302
             +  D   LLDR KCF  VAA VK++V DS VDLKSPEL VLVELLP+S +PS   V  
Sbjct: 258 ASEVLDQCPLLDRIKCFETVAAGVKDIVPDSVVDLKSPELCVLVELLPLSRIPSGSFVAA 317

Query: 303 VSILPQKLVTTKPRLSIRALVSGTNAKNG 331
           VS+LP +LV+TKP+L I+ LV  +  K G
Sbjct: 318 VSVLPHRLVSTKPKLCIKPLVPESKHKKG 346

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449487893|ref|XP_004157853.1| PREDICTED: uncharacterized protein LOC101227649 [Cucumis sativus]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 193/334 (57%), Positives = 232/334 (69%), Gaps = 23/334 (6%)

Query: 4   EKEEEELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHK 63
           E E + + PWEQHS VISIPRFDYN+PS+LL R  +GFL+TCTIKREKSATKEAISIL K
Sbjct: 28  ETERKMMTPWEQHSAVISIPRFDYNAPSALLHRCQTGFLITCTIKREKSATKEAISILQK 87

Query: 64  YVGHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHS 123
           YV + N   S+ L  S+    SKRRKV  D              ++  S GG    + H+
Sbjct: 88  YVQYFNSSMSETLVVSDENETSKRRKVSED--------------VDHRSVGGESSTDEHA 133

Query: 124 ------SVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLK 177
                 S K++   E    +SLVKLTR+GLLL TF ++ SP+T+ IV +I QSL + +LK
Sbjct: 134 KETSLISTKSEAKVEKCSPISLVKLTRSGLLLFTFTKDISPDTVYIVKDIMQSLEARTLK 193

Query: 178 SPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQ 237
           S  WCHRIFPIQATC L E +LQ  VSKLVL F+ND+ N LS PVKFA+GYNRRG EE +
Sbjct: 194 SLAWCHRIFPIQATCSLNENDLQGVVSKLVLHFMNDKGNILSHPVKFAIGYNRRGIEETE 253

Query: 238 NKIPKDTKDSD-VSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPS 296
            K  K  +DS  V+ +L R+KCF+IVAAAVK VVSD+ VDLKSPEL VLVELLP+SGLPS
Sbjct: 254 MK--KTFEDSSGVNVILGRDKCFSIVAAAVKGVVSDAIVDLKSPELCVLVELLPVSGLPS 311

Query: 297 ELLVVGVSILPQKLVTTKPRLSIRALVSGTNAKN 330
              VVGVS+L   LVTTKPRL I+AL S T AK+
Sbjct: 312 GSSVVGVSVLSNNLVTTKPRLCIKALTSDTKAKS 345

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357136974|ref|XP_003570077.1| PREDICTED: uncharacterized protein LOC100839515 isoform 1 [Brachypodium distachyon]

 Score =  315 bits (808), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 167/323 (51%), Positives = 221/323 (68%), Gaps = 5/323 (1%)

Query: 10  LKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYVGHNN 69
           L+PWEQH+ VI++PR+DY +  SLL RSHSGFL+TC IKREKSATKEAISIL +Y+   +
Sbjct: 37  LQPWEQHAAVINLPRYDYRASRSLLLRSHSGFLITCPIKREKSATKEAISILGEYINPAS 96

Query: 70  IENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEE--DSAGGLQKNECHSSVKT 127
             +S+ LE       SK+RK C++  G + ++ A  N  ++  +S G ++        KT
Sbjct: 97  SHSSENLEPCVIEVASKKRKTCSEASGIENSEDAVTNGKDDASESTGCIEVETSSLHSKT 156

Query: 128 DTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFP 187
               +   ++SLVKL R+GLL  +F      + + +++ +F SL SG LKSP WCHRIFP
Sbjct: 157 SEIIDRTSNLSLVKLARSGLLFFSF-TSGGLHVVQMLTEVFHSLRSGKLKSPQWCHRIFP 215

Query: 188 IQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDS 247
           IQ TCVL E EL ATVSKL L F+ +++++   P+KFAVGYNRRG +E   K  K+  DS
Sbjct: 216 IQETCVLSETELHATVSKLFLDFLRNKEDQY-EPIKFAVGYNRRGIDETVTKTQKNDNDS 274

Query: 248 DVS-ALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL 306
            +  A++DR KCF +VAAA+K V  D+ VDLKSPE++VLVELLPISG+P    V GVS+L
Sbjct: 275 SIQQAVMDREKCFKVVAAAIKSVAEDAIVDLKSPEVAVLVELLPISGVPIGSSVAGVSVL 334

Query: 307 PQKLVTTKPRLSIRALVSGTNAK 329
           P +LV TKPRL IRALVS T AK
Sbjct: 335 PAELVATKPRLCIRALVSDTKAK 357

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283132369|dbj|BAI63590.1| hypothetical protein [Lotus japonicus]

 Score =  310 bits (793), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 170/322 (52%), Positives = 210/322 (65%), Gaps = 39/322 (12%)

Query: 6   EEEELKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYV 65
           E+  + PWEQHS VI + R+DYN+P+SLL  SHSGFL+TCTIKREKSATKEA+SIL K  
Sbjct: 46  EKAMMTPWEQHSGVIKLSRYDYNAPASLLLHSHSGFLITCTIKREKSATKEALSILEK-- 103

Query: 66  GHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSSV 125
                        +   G  K+       M GK    A+  + ++D              
Sbjct: 104 -------------NCRPGFIKQAWSWALMMAGKVLSPAKAEAEDKDGVT----------- 139

Query: 126 KTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRI 185
                     D+SLVKLTRNGLLL  +P    P+T+NIVSNI QSL SGS   PVWCHRI
Sbjct: 140 ----------DLSLVKLTRNGLLLFIYPNNMFPDTVNIVSNIIQSLESGSTSLPVWCHRI 189

Query: 186 FPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTK 245
           FPIQATC L EKELQ  VS LV +F+  +Q KL RP+KFAVGYNRRG E+   K  K+  
Sbjct: 190 FPIQATCRLNEKELQEVVSMLVKKFLASKQGKLERPLKFAVGYNRRGIED--TKFAKENS 247

Query: 246 D-SDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVS 304
           + S+  +LLDRNKCF++VA+AV +VV DS VDL+SPELS+LVELLP+S +P+  LVV VS
Sbjct: 248 NGSNAFSLLDRNKCFSVVASAVNDVVEDSVVDLRSPELSILVELLPLSRVPNGSLVVAVS 307

Query: 305 ILPQKLVTTKPRLSIRALVSGT 326
            LP+ LV+TKPRL ++AL S T
Sbjct: 308 ALPRNLVSTKPRLCVKALTSNT 329

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	331
TAIR|locus:2203033	348	AT1G09290 "AT1G09290" [Arabido	0.948	0.902	0.578	2.3e-87

TAIR|locus:2203033 AT1G09290 "AT1G09290" [Arabidopsis thaliana (taxid:3702)]

 Score = 873 (312.4 bits), Expect = 2.3e-87, P = 2.3e-87
 Identities = 187/323 (57%), Positives = 227/323 (70%)

Query:    10 LKPWEQHSRVISIPRFDYNSPSSLLQRSHSGFLLTCTIKREKSATKEAISILHKYVGHNN 69
             L PWEQHS +ISIPRFDY +PSSLL  SHSGFL+TC IKREKSATKE +SIL KY+G  +
Sbjct:    32 LTPWEQHSSIISIPRFDYKAPSSLLHHSHSGFLVTCNIKREKSATKEVMSILGKYIGSMH 91

Query:    70 IENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIEEDSAGGLQKNECHSSVKTDT 129
              E  + L S  TA  SK++KVC  +       G +   +E D+     +N     +K   
Sbjct:    92 EEKPEVLNS--TA--SKKQKVCAQETE---EGGEKTVPLENDALQETGENPNVEDLKL-A 143

Query:   130 NTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQ 189
             N E +  MSLVKLT++GLLL TFP E+SPNT NIVS +FQS+ SG+LK+P+WCHRIFP+Q
Sbjct:   144 NEEHNSLMSLVKLTKSGLLLFTFPVENSPNTTNIVSRVFQSMESGALKAPIWCHRIFPVQ 203

Query:   190 ATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDV 249
             ATC L EKEL+ TVSKLV +FVND+ N LS+PVKFA GY RRG EE + KI KD  D  V
Sbjct:   204 ATCGLTEKELRETVSKLVQRFVNDKDNTLSKPVKFAAGYQRRGAEETKGKIRKDASDVLV 263

Query:   250 SA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQ 308
                LLDR KCF  VAA VK++V DS VDLKSPEL VLVELLP+S + S   V  VS+LP 
Sbjct:   264 QCPLLDRIKCFETVAAGVKDIVPDSVVDLKSPELCVLVELLPLSRISSGSFVAAVSVLPH 323

Query:   309 KLVTTKPRLSIRALVSGTNAKNG 331
             +LV+TKP+L I+ LV  +  K G
Sbjct:   324 RLVSTKPKLCIKPLVPESKHKKG 346


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.366    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      331       324   0.00086  116 3  11 23  0.44    34
                                                     33  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  203 KB (2115 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.19u 0.12s 28.31t   Elapsed:  00:00:02
  Total cpu time:  28.19u 0.12s 28.31t   Elapsed:  00:00:02
  Start:  Sat May 11 02:33:36 2013   End:  Sat May 11 02:33:38 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	331
cd11717	158	cd11717, THUMP_THUMPD1_like, THUMP domain-containi	4e-13
COG1818	175	COG1818, COG1818, Predicted RNA-binding protein, c	0.003

>gnl|CDD|212586 cd11717, THUMP_THUMPD1_like, THUMP domain-containing protein 1-like

 Score = 65.7 bits (161), Expect = 4e-13
 Identities = 35/168 (20%), Positives = 64/168 (38%), Gaps = 34/168 (20%)

Query: 140 VKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKEL 199
           V+     ++ +       P  + +V  IF+   S   K   +  R+ PI  TC    +E+
Sbjct: 25  VETGVKNVVFIKTRPPVDP--VELVEKIFEDAASTKKKRTRFIQRLIPIDVTCKASLEEI 82

Query: 200 QATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCF 259
           +    +L+ +     +     P  FAV    R      NK+ +D                
Sbjct: 83  EKLAKELLKKHFPTAE----PPKTFAVECKSRNN----NKLSRD---------------- 118

Query: 260 TIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILP 307
            ++ A  + V     VDLK+P+  +LVE++          V G+S++ 
Sbjct: 119 EVIKAVAELVPEIHKVDLKNPDKVILVEVIK--------NVCGISVVK 158

This family contains THUMP domain-only proteins including THUMP domain-containing protein 1 and Saccharomyces cerevisiae Tan1. Tan1 is non essential and has been shown to be required for the formation of the modified nucleoside N(4)-acetylcytidine (ac(4)C) in tRNA. To date, there is no functional information available about THUMPD1. The THUMP domain is named after thiouridine synthases, methylases and PSUSs. The domain consists of about 110 amino acid residues. It is predicted to be an RNA-binding domain and probably functions by delivering a variety of RNA modification enzymes to their targets. Length = 158

>gnl|CDD|224731 COG1818, COG1818, Predicted RNA-binding protein, contains THUMP domain [General function prediction only]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 29/127 (22%)

Query: 176 LKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEE 235
           LK      R+ P++        E++   ++L        + K+     FAV   RRG   
Sbjct: 55  LKEVPEVERVIPVEIEVETDLDEIEEAAAELA-------EEKIKEGKTFAVRTKRRG--- 104

Query: 236 KQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELL----PI 291
                       D ++         +V  AVK+      VDL+ P+  V VE+L     I
Sbjct: 105 ----------KHDFTSR----DVEVVVGEAVKKATGAE-VDLEDPDKVVWVEVLGDRAGI 149

Query: 292 SGLPSEL 298
           S LP E 
Sbjct: 150 SVLPGEK 156

Length = 175

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	331
KOG3943	291	consensus THUMP domain-containing proteins [Genera	100.0
PF02926	144	THUMP: THUMP domain; InterPro: IPR004114 The THUMP	99.6
COG1818	175	Predicted RNA-binding protein, contains THUMP doma	99.57
PRK01565	394	thiamine biosynthesis protein ThiI; Provisional	98.51
PRK01269	482	tRNA s(4)U8 sulfurtransferase; Provisional	98.31
PRK08384	381	thiamine biosynthesis protein ThiI; Provisional	98.19
TIGR00342	371	thiazole biosynthesis/tRNA modification protein Th	98.0
COG0301	383	ThiI Thiamine biosynthesis ATP pyrophosphatase [Co	97.76
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	94.47
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	94.18
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	90.35

>KOG3943 consensus THUMP domain-containing proteins [General function prediction only]

Probab=100.00  E-value=6.6e-45  Score=330.84  Aligned_cols=243  Identities=19%  Similarity=0.311  Sum_probs=186.0

Q ss_pred             CcccCCCCceEEEEeCCChhhhHHHHHHHHHHHhh-hcccCcccccccCCCccCCccccccccCCCCCCcCCCcccCccc
Q 020116           31 SSLLQRSHSGFLLTCTIKREKSATKEAISILHKYV-GHNNIENSQRLESSNTAGDSKRRKVCTDDMGGKCADGAEINSIE  109 (331)
Q Consensus        31 ~~~L~~G~~GilvTC~~grEk~A~~E~~~LLne~a-d~ly~~~~~~~e~~~~~~~~~~~k~~~~~~~~e~~d~~~~e~e~  109 (331)
                      ...|+||.+|||+||+ ++||||++|+|.||+|.. |..||++.  .+.++. .          +.|.|..++ ..|.|.
T Consensus        36 ~~~lepG~~Gi~~tC~-~HErQA~QEaysl~~ElygD~~~G~~~--~~~~E~-a----------p~gsE~~~~-~aeaEl  100 (291)
T KOG3943|consen   36 PRQLEPGLQGILITCN-MHERQAVQEAYSLLNELYGDDMYGPEK--FTDKEQ-A----------PSGSEGEDD-DAEAEL  100 (291)
T ss_pred             ccccCCCcceEEEEcc-chHHHHHHHHHHHHHHHhcCcccCchh--ccCccc-C----------CCCCcCCCC-hHHHhh
Confidence            3579999999999999 599999999999999975 45665431  001111 1          111111000 111110


Q ss_pred             cccccccccccccCCCcCCCCCCccccccceeccccceEEEEeccCCCCCHHHHHHHHHHhhcc--CCcCCceeEEEeee
Q 020116          110 EDSAGGLQKNECHSSVKTDTNTETDFDMSLVKLTRNGLLLLTFPREHSPNTINIVSNIFQSLGS--GSLKSPVWCHRIFP  187 (331)
Q Consensus       110 ~die~~~ke~e~~k~~krf~~~~~~~~f~~vkl~~~Gv~fi~f~~~~~~dP~~lv~~I~~dv~~--~~~~~tRfi~Rl~P  187 (331)
                      .|.+.+    .++++.-    -+....|.+|+++|+|+.||....  ++.|.++|+.|++|+.+  ++.+++||+|||+|
T Consensus       101 kdEe~g----ddLk~~~----~~~~~P~~Fv~~~~~Cv~f~~t~K--niVpe~~v~~i~~dm~elk~k~kRtR~~Qr~~P  170 (291)
T KOG3943|consen  101 KDEEVG----DDLKAST----EMRLRPFQFVESGANCVVFIRTLK--NIVPEKLVHHILQDMYELKTKKKRTRVIQRMLP  170 (291)
T ss_pred             hhhhhH----HHHhhhh----hhhcCchhhhhccCceEEeecccC--ccCchHHHHHHHHHHHhhhccchhhhhhhhhcc
Confidence            011111    1122100    001124789999999999999865  57999999999999987  56789999999999


Q ss_pred             eeeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhHHHHHHHHHhh
Q 020116          188 IQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVK  267 (331)
Q Consensus       188 I~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~~VA~~V~  267 (331)
                      |++||.|.+++|.+++..+|.+||+....  .+-.||+|+|++||           |      +++.|++||+.|+.+|.
T Consensus       171 i~~tc~a~le~m~k~a~~VI~p~fkap~t--gK~~tf~VE~k~RN-----------n------~~v~r~~vi~~V~~~Vc  231 (291)
T KOG3943|consen  171 ISGTCKAFLEDMKKYAETVIEPWFKAPNT--GKKGTFQVEYKSRN-----------N------SHVNREEVIREVAGIVC  231 (291)
T ss_pred             ccchHHhhHHHHHHHHHHhhcccccCCCC--CcCceEEEEEEecc-----------c------cchhHHHHHHHHHHHHH
Confidence            99999999999999999999999975531  35579999999999           6      99999999999999999


Q ss_pred             hcCCCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEeecCCccccccceeeeeccCCCC
Q 020116          268 EVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRLSIRALVSGTN  327 (331)
Q Consensus       268 ~~~~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv~~y~~~~K~~l~~~~l~~~~~  327 (331)
                      ..++..+|||+|||++|+|||++  .      ++||||+.+|+-++||||  ++++.-+.
T Consensus       232 ~l~se~~VdL~n~D~t~~Ve~~k--s------~I~~~Vv~dy~~~RKYnl--q~~~~s~~  281 (291)
T KOG3943|consen  232 TLNSENKVDLTNPDYTVVVEIIK--A------VICLSVVKDYMLFRKYNL--QEVVKSPK  281 (291)
T ss_pred             hcCccceeeccCCCeEEEEEeee--c------eeeeeehHHHHHHHHhhH--HHhhcccC
Confidence            99999999999999999999999  7      999999999999999998  66665443

>PF02926 THUMP: THUMP domain; InterPro: IPR004114 The THUMP domain is shared by 4-thiouridine, pseudouridine synthases and RNA methylases[] and is probably an RNA-binding domain that adopts an alpha/beta fold similar to that found in the C-terminal domain of translation initiation factor 3 and ribosomal protein S8

Probab=99.60  E-value=5.3e-15  Score=125.49  Aligned_cols=109  Identities=24%  Similarity=0.268  Sum_probs=92.6

Q ss_pred             CHHHHHHHHHHhhccCCcCCceeEEEeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCcccccc
Q 020116          159 NTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQN  238 (331)
Q Consensus       159 dP~~lv~~I~~dv~~~~~~~tRfi~Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~  238 (331)
                      ...+.+.+.+..        +++++|++|++..|.+++++|.+.+..++..++..      ...||+|++++|+      
T Consensus        35 ~~~~~~~~~~~~--------~~~~~ri~p~~~~~~~~~~~i~~~~~~~~~~~~~~------~~~tF~V~~~r~~------   94 (144)
T PF02926_consen   35 GDSEEIYRALEK--------LRGISRIIPICRFCEADLEEIKEKAKELLWEKFIK------EDKTFAVRCRRRG------   94 (144)
T ss_dssp             EHHHHHHHHHHH--------SSSESEEEEEEEEEESSHHHHHHHHHCSHGGGHSH------TTSEEEEEEEEES------
T ss_pred             CCHHHHHHHHhc--------ccceeEEEEEEEEcCCCHHHHHHHHHHHHHHHhCC------CCCEEEEEEEEcC------
Confidence            355555555554        35999999999999999999999999999988842      2239999999999      


Q ss_pred             CCCCCCCCccccc-cCChhHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEeec
Q 020116          239 KIPKDTKDSDVSA-LLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILP  307 (331)
Q Consensus       239 ~~~~~n~~~~~~~-~l~R~~vI~~VA~~V~~~~~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv~  307 (331)
                           +      . .++++++.+.|+++|....+ ++|||+|||++|.||+++  +      .|+|||.+
T Consensus        95 -----~------~~~~~s~ei~~~vg~~i~~~~~-~~Vdl~~Pd~~i~Vev~~--~------~~~i~i~~  144 (144)
T PF02926_consen   95 -----K------HFPFTSMEIEREVGDAIKEKGG-PKVDLKNPDVVIHVEVRK--D------KCYISIDT  144 (144)
T ss_dssp             -----S------SSSSCHHHHHHHHHHHHHHHHH-TEE-SSSSSEEEEEEEET--T------EEEEEEES
T ss_pred             -----C------ccccCHHHHHHHHHHHHHHHhC-CCccCcCcCEEEEEEEEC--C------EEEEEEeC
Confidence                 4      4 89999999999999998655 899999999999999999  9      99999975

The THUMP domain probably functions by delivering a variety of RNA modification enzymes to their targets []. This domain is found in the thiamine biosynthesis proteins (ThiI) (see IPR003720 from INTERPRO).; PDB: 3TLJ_A 3TM5_B 3TM4_A 2DIR_A 3TMA_A 1VBK_B 3K0B_A 2C5S_A 3LDU_A 3V8V_B ....

>COG1818 Predicted RNA-binding protein, contains THUMP domain [General function prediction only]

Probab=99.57  E-value=3.8e-14  Score=126.38  Aligned_cols=109  Identities=28%  Similarity=0.400  Sum_probs=89.4

Q ss_pred             cCCceeEEEeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCCh
Q 020116          176 LKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDR  255 (331)
Q Consensus       176 ~~~tRfi~Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R  255 (331)
                      ....-++.|++|+...|.+++++|...+..+++.+.       .++.||||+.++|+           +      -.++-
T Consensus        55 ~~~~~~~~rv~pv~~~~~~dldeI~~~~~~l~~~~i-------~~~~tFaVr~~rRG-----------~------~~f~s  110 (175)
T COG1818          55 LKEVPEVERVIPVEIEVETDLDEIEEAAAELAEEKI-------KEGKTFAVRTKRRG-----------K------HDFTS  110 (175)
T ss_pred             hcCCCceeeEEEEEeeccCCHHHHHHHHHHHHhccc-------CCCCeEEEEEeecC-----------C------CCccc
Confidence            345678999999999999999999999999999877       47789999999999           2      23333


Q ss_pred             hHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEeecCCccccccce
Q 020116          256 NKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTKPRL  317 (331)
Q Consensus       256 ~~vI~~VA~~V~~~~~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv~~y~~~~K~~l  317 (331)
                      .++--.++++|..+ .+..|||++||++|.|||++  .      .+||||+++....+|+.+
T Consensus       111 ~~~~v~vg~~v~~~-tg~~VdL~~Pd~vv~Vevl~--~------~a~Isv~~~~~e~~k~~~  163 (175)
T COG1818         111 RDVEVVVGEAVKKA-TGAEVDLEDPDKVVWVEVLG--D------RAGISVLPGEKEEKKIKL  163 (175)
T ss_pred             cceeehhHHHHHHH-hCCcccCCCCCEEEEEEEec--C------cceEEEeCchhhhhhccc
Confidence            34434555666653 68999999999999999999  8      899999998877777644

>PRK01565 thiamine biosynthesis protein ThiI; Provisional

Probab=98.51  E-value=8.3e-07  Score=88.71  Aligned_cols=84  Identities=18%  Similarity=0.226  Sum_probs=72.1

Q ss_pred             EEEeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccc-cCChhHHHH
Q 020116          182 CHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSA-LLDRNKCFT  260 (331)
Q Consensus       182 i~Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~-~l~R~~vI~  260 (331)
                      |+.+.|+.. |..++++|.+.+..++..+.       ....||+|+.++++           +      . .++..++-.
T Consensus        71 I~~~s~~~~-~~~~~e~I~~~~~~~~~~~~-------~~~~tF~Vr~rR~~-----------k------~f~~tS~ei~r  125 (394)
T PRK01565         71 IQSFSPVYK-VEKDLEAIKEAALELLKEVY-------KEGKTFKVEARRSD-----------K------SFPLDSMELNR  125 (394)
T ss_pred             cceEEEEEE-ECCCHHHHHHHHHHHHHhhc-------cCCCcEEEEEEECC-----------C------CCCCChHHHHH
Confidence            667778874 78999999999999988764       24569999999998           3      4 789999999


Q ss_pred             HHHHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 020116          261 IVAAAVKEVVSDSAVDLKSPELSVLVELLP  290 (331)
Q Consensus       261 ~VA~~V~~~~~~hkVdLknPd~~IlVEV~k  290 (331)
                      .|++.|....++.+|||+|||++|.|||.+
T Consensus       126 ~vG~~I~~~~~~~~VdL~nPd~~i~vei~~  155 (394)
T PRK01565        126 ELGAYILENFPNLKVDVKNPDVTLRVEVRK  155 (394)
T ss_pred             HHHHHHHhhCCCCcccccCCCeEEEEEEEc
Confidence            999999876556899999999999999987

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional

Probab=98.31  E-value=5.3e-06  Score=84.99  Aligned_cols=85  Identities=18%  Similarity=0.259  Sum_probs=73.2

Q ss_pred             eEEEeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhHHHH
Q 020116          181 WCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFT  260 (331)
Q Consensus       181 fi~Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~  260 (331)
                      =++++.|+..++..++++|...+..++..++.        ..||+|+.++++           +      ..++..++-.
T Consensus        72 Gi~~~~~v~~~~~~~~e~I~~~a~~~~~~~~~--------~~tF~VrarR~~-----------k------~~~~S~ei~r  126 (482)
T PRK01269         72 GIHHFLEVEEYPFTDLHDIFEKALALYREQLE--------GKTFCVRVKRRG-----------K------HDFTSIDVER  126 (482)
T ss_pred             CceEEEEEEEECCCCHHHHHHHHHHHHHHhcC--------CCeEEEEEEeCC-----------C------CCCChHHHHH
Confidence            36788999999889999999999999888762        359999999988           4      4788889999


Q ss_pred             HHHHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 020116          261 IVAAAVKEVVSDSAVDLKSPELSVLVELLP  290 (331)
Q Consensus       261 ~VA~~V~~~~~~hkVdLknPd~~IlVEV~k  290 (331)
                      .|++.|.....+.+|||+|||++|.|||.+
T Consensus       127 ~vG~~I~~~~~~~~VdL~nPD~~i~VeI~~  156 (482)
T PRK01269        127 YVGGGLNQHIESAGVDLKNPDVTVHLEIRD  156 (482)
T ss_pred             HHHHHHHHhCCCCceeCCCCCEEEEEEEEC
Confidence            999999754456899999999999999988

>PRK08384 thiamine biosynthesis protein ThiI; Provisional

Probab=98.19  E-value=1.9e-05  Score=78.81  Aligned_cols=88  Identities=20%  Similarity=0.170  Sum_probs=69.2

Q ss_pred             EEEeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhHHHHH
Q 020116          182 CHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTI  261 (331)
Q Consensus       182 i~Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~~  261 (331)
                      |..+.|+.. |..++++|...+..++..++....   ....||+|+.++.+           .     .-.++..++=..
T Consensus        72 I~~~s~~~~-~~~~~~~i~~~~~~~~~~~~~~~~---~~~~tF~V~~rR~~-----------k-----~f~~tS~ei~~~  131 (381)
T PRK08384         72 IVSLSPAME-IDAELEKINRTALKLFRRKKRELE---LEKPRFRVTARRIT-----------K-----EFPLKSPEIQAK  131 (381)
T ss_pred             ceeEEEEEE-eCCCHHHHHHHHHHHHHHhhhccc---ccCCeEEEEEEeCC-----------C-----CCCCChHHHHHH
Confidence            455666654 557899999999999988763110   12359999999998           2     136888999999


Q ss_pred             HHHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 020116          262 VAAAVKEVVSDSAVDLKSPELSVLVELLP  290 (331)
Q Consensus       262 VA~~V~~~~~~hkVdLknPd~~IlVEV~k  290 (331)
                      |++.|... ++.+|||+|||+.|.|||-+
T Consensus       132 vG~~i~~~-~~~~Vdl~~Pd~~i~vEir~  159 (381)
T PRK08384        132 VGEYILEN-EESEVDLHNYDIEVGVELME  159 (381)
T ss_pred             HHHHHHhc-CCCCccCcCCCEEEEEEEEe
Confidence            99999765 46899999999999999977

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI

Probab=98.00  E-value=4.9e-05  Score=75.50  Aligned_cols=81  Identities=25%  Similarity=0.336  Sum_probs=63.5

Q ss_pred             EeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhHHHHHHH
Q 020116          184 RIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVA  263 (331)
Q Consensus       184 Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~~VA  263 (331)
                      .+-|+. .|..++++|. .+..++..+..       ...||+|+.++++           .     .=.++..++-..|+
T Consensus        71 ~~s~~~-~~~~~~~~i~-~~~~~~~~~~~-------~~~tF~Vr~kR~~-----------k-----~f~~~S~ei~r~~G  125 (371)
T TIGR00342        71 SFSPAF-KCDLPFDEIH-ILLKALKQLRK-------EGKTFKVRTKRRG-----------K-----DFPLNSVEVNKYVG  125 (371)
T ss_pred             EEEEEE-EECCCHHHHH-HHHHHHHHhhc-------cCCcEEEEEEECC-----------C-----CCCCChHHHHHHHH
Confidence            333443 5677899999 78788877652       3459999999998           1     13466999999999


Q ss_pred             HHhhhcCCCCeeeCCCCCeEEEEEEee
Q 020116          264 AAVKEVVSDSAVDLKSPELSVLVELLP  290 (331)
Q Consensus       264 ~~V~~~~~~hkVdLknPd~~IlVEV~k  290 (331)
                      +.|... .+.+|||+|||++|.|||.+
T Consensus       126 ~~i~~~-~~~~VdL~nPd~~i~vei~~  151 (371)
T TIGR00342       126 GGIVEK-IGLKVDLTNPDITVHIEIRE  151 (371)
T ss_pred             HHHHHH-cCCcccccCCCEEEEEEEEC
Confidence            999865 34899999999999999987

The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.

>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]

Probab=97.76  E-value=0.00019  Score=71.49  Aligned_cols=101  Identities=19%  Similarity=0.185  Sum_probs=71.3

Q ss_pred             EEEeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhHHHHH
Q 020116          182 CHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTI  261 (331)
Q Consensus       182 i~Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~~  261 (331)
                      |+-+.|+.. |..+++++...+..++...+       .+..||+|+.++++.          |      -.++..+|=..
T Consensus        70 I~s~sp~~~-v~~~~~~i~~~~~~~~~~~~-------~~g~tF~V~arR~~k----------~------f~~~S~ev~~~  125 (383)
T COG0301          70 IVSFSPAME-VEASLEEIIKAALLALRRKY-------KEGKTFKVRARRAGK----------E------FPFTSLEVNRY  125 (383)
T ss_pred             cceeceeEE-ecCCcHHHHHHHHHHHHHhh-------hcCCeEEEEEEeCCC----------C------CCCCHHHHHHH
Confidence            444555543 45566666666666665554       244599999999992          2      46788899999


Q ss_pred             HHHHhhhcCCCCeeeCCCCCeEEEEEEee------------CCCCCCCccEEEEEee
Q 020116          262 VAAAVKEVVSDSAVDLKSPELSVLVELLP------------ISGLPSELLVVGVSIL  306 (331)
Q Consensus       262 VA~~V~~~~~~hkVdLknPd~~IlVEV~k------------~~~~~~~~~v~giSVv  306 (331)
                      |++.|.....+.+|||+|||++|.|||-.            ..|+|.|++==+|+.|
T Consensus       126 vG~~i~~~~~~~~Vdl~~Pdv~i~iEIr~~~ayi~~~~~~G~GGLPvGt~Gk~l~Ll  182 (383)
T COG0301         126 VGEAILENIESAGVDLKNPDVEIHIEIREDKAYIYTERIKGPGGLPVGTQGKVLLLL  182 (383)
T ss_pred             HHHHHHhhcccceeecCCCCeEEEEEEecCeEEEEEeeeccCCCCccccCCcEEEEE
Confidence            99998876568899999999999999984            1256666554444444

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=94.47  E-value=0.14  Score=51.38  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=68.6

Q ss_pred             ceeEEEeeeeeeEeec-CHHHHHHHHHHH-HHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChh
Q 020116          179 PVWCHRIFPIQATCVL-KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRN  256 (331)
Q Consensus       179 tRfi~Rl~PI~~tc~A-~~~~i~~~~~~l-~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~  256 (331)
                      +|-.+|+.=+-..|.+ +.++|-..+..+ +..||+       +..||+|.++.=+           .      ...+..
T Consensus        53 sRta~Ri~i~l~~fk~~~~~dly~~v~~i~w~~~~~-------~~~tf~V~~~~~~-----------~------~~~~s~  108 (381)
T COG0116          53 SRTASRILLPLGEFKAETLDDLYEAVKAINWEEYFP-------EGATFAVRFRGVG-----------S------HLFTSP  108 (381)
T ss_pred             HHHHHhhheeeeeeeeCCHHHHHHHhhcCCHHHhCC-------CCCEEEEEEEecc-----------C------CccccH
Confidence            4667777777777766 799998888777 788884       5569999966444           1      222223


Q ss_pred             HHHHHHHHHhhhc-----CCCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEeecCCccccc
Q 020116          257 KCFTIVAAAVKEV-----VSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLVTTK  314 (331)
Q Consensus       257 ~vI~~VA~~V~~~-----~~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv~~y~~~~K  314 (331)
                      ++=..|-++|-+.     ...-.||+..||+.|-|++.+  +      .|-|+|=--=.-+.|
T Consensus       109 ~~a~~vkdAIvd~~~~~~~~r~~v~~~~Pdv~i~v~l~~--~------~~~l~iDttG~sLhk  163 (381)
T COG0116         109 DIARIVKDAIVDRFRRKYGRRPSVDLDGPDVRINVELDK--D------TATLGIDTTGDSLHK  163 (381)
T ss_pred             HHHHHHHHHHHHHHhhccCCCCCccccCCCeEEEEEEEc--C------EEEEEEeCCCcchhh
Confidence            3333333333322     222389999999999999999  8      788887532224444

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=94.18  E-value=0.28  Score=47.73  Aligned_cols=81  Identities=20%  Similarity=0.182  Sum_probs=56.6

Q ss_pred             EeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhHHHHHHHHHhhhcC
Q 020116          191 TCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVV  270 (331)
Q Consensus       191 tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~~VA~~V~~~~  270 (331)
                      .|..+.+++...+..+--..+       .. .+|+|..+..+           +      +..++..+-+.+++.+... 
T Consensus        61 ~~~~~~~~l~~~~~~~~~~~~-------~~-~sf~v~~~~~~-----------~------~~~~~~~~~~~ig~~i~~~-  114 (329)
T TIGR01177        61 YDTCAAKDLYDFVAGLEASDL-------DR-KSFAVRVRDLR-----------G------YSVDKARLERKIGAILKKK-  114 (329)
T ss_pred             hcCCCHHHHHHHHhhcchhhc-------cC-CeEEEEEEecC-----------C------CCCCHHHHHHHHHHHHHhc-
Confidence            444567778777665422222       12 59999998877           3      3566655556687777653 


Q ss_pred             CCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEee
Q 020116          271 SDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  306 (331)
Q Consensus       271 ~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv  306 (331)
                       +.+|||+|||+.|.|.+.+  +      .|-+|+.
T Consensus       115 -g~~v~l~~Pd~~i~v~~~~--~------~~~~g~~  141 (329)
T TIGR01177       115 -GFKVSLRRPDIVVRVVITE--D------IFYLGRV  141 (329)
T ss_pred             -CCccccCCCCeEEEEEEEC--C------eEEEEEE
Confidence             3599999999999999988  7      6777764

This family is found exclusively in the Archaea.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=90.35  E-value=1.5  Score=47.32  Aligned_cols=100  Identities=15%  Similarity=0.159  Sum_probs=60.6

Q ss_pred             eeEEEeeeeeeEeec-CHHHHHHHHHHH-HHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhH
Q 020116          180 VWCHRIFPIQATCVL-KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNK  257 (331)
Q Consensus       180 Rfi~Rl~PI~~tc~A-~~~~i~~~~~~l-~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~  257 (331)
                      |...|++=.-....+ +.++|...+..+ +..||+       ...||+|....++           +  +-.++.+--..
T Consensus        52 R~A~RVll~l~~f~a~~~~~Ly~~v~~i~W~~~l~-------~~~tf~V~~~~~~-----------s--~l~~~~~~~~~  111 (702)
T PRK11783         52 RLASRILLPLAEFKVYSDLDLYLGVQAIDWTEHFS-------PDKTFAVDFSGTN-----------D--EIRNTQFGALK  111 (702)
T ss_pred             cchhheEEEeeeeecCCHHHHHHHHHcCCHHHhCC-------CCCeEEEEEEEec-----------C--CccCcHHHHHH
Confidence            444444333334433 788888877765 444553       3459999988776           1  00012222233


Q ss_pred             HHHHHHHHhhhcCC-CCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEeec
Q 020116          258 CFTIVAAAVKEVVS-DSAVDLKSPELSVLVELLPISGLPSELLVVGVSILP  307 (331)
Q Consensus       258 vI~~VA~~V~~~~~-~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv~  307 (331)
                      |-++|.+.+..... .-.||+++||+.|.|.+.+  +      .|.|||=-
T Consensus       112 vKdAI~d~~~~~~~~rp~vd~~~pdv~i~~~~~~--~------~~~l~ld~  154 (702)
T PRK11783        112 VKDAIVDRFRRKGGPRPSVDKEQPDIRINARLNK--G------EATISLDL  154 (702)
T ss_pred             HHHHHHHHHHHhcCCCCCCCCCCCCEEEEEEEeC--C------EEEEEEEC
Confidence            44445555543321 2379999999999999999  8      78888753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	331
2dir_A	98	Thump domain-containing protein 1; structural geno	1e-09

>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3 Length = 98

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 16/119 (13%), Positives = 41/119 (34%), Gaps = 30/119 (25%)

Query: 190 ATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDV 249
           ++     ++++      +  +             F + Y  R                  
Sbjct: 5   SSGKAFLEDMKKYAETFLEPWFKAPN-----KGTFQIVYKSRNNSH-------------- 45

Query: 250 SALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQ 308
              ++R +    +A  V  + S++ VDL +P+ +V+VE++          V  +S++  
Sbjct: 46  ---VNREEVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKA--------VCCLSVVKS 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	331
2dir_A	98	Thump domain-containing protein 1; structural geno	99.76
1vbk_A	307	Hypothetical protein PH1313; structural genomics,	98.41
2c5s_A	413	THII, probable thiamine biosynthesis protein THII;	98.39
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	96.37
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	96.3
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	95.81
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	95.32
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	95.15
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	94.69

>2dir_A Thump domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.308.1.3

Probab=99.76  E-value=2.1e-18  Score=138.62  Aligned_cols=93  Identities=17%  Similarity=0.303  Sum_probs=84.7

Q ss_pred             eeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhHHHHHHHHHhhh
Q 020116          189 QATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKE  268 (331)
Q Consensus       189 ~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~~VA~~V~~  268 (331)
                      ..+|.+++++|.+.|..++.++|+.     .++.||+|++++|+           +      +.|++++|++.||++|.+
T Consensus         4 ~~~~~~~~e~I~~~a~~~~~~~f~~-----~~~~TF~V~~kR~~-----------k------~~~~S~ei~~~vG~~i~~   61 (98)
T 2dir_A            4 GSSGKAFLEDMKKYAETFLEPWFKA-----PNKGTFQIVYKSRN-----------N------SHVNREEVIRELAGIVCT   61 (98)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHHHST-----TCCCEEEEEEECSS-----------C------CSSCHHHHHHHHHHHHHH
T ss_pred             eEEEECCHHHHHHHHHHHHHHhcCc-----CCCceEEEEEEeCC-----------C------CCCCHHHHHHHHHHHHHh
Confidence            4789999999999999999999852     24469999999999           5      599999999999999998


Q ss_pred             cCCCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEeecCCcc
Q 020116          269 VVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSILPQKLV  311 (331)
Q Consensus       269 ~~~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv~~y~~  311 (331)
                      ..++++|||+|||++|.|||.+  +      .|||||+++|+.
T Consensus        62 ~~~~~kVdL~nPd~~I~VEI~~--~------~~~isv~~~y~~   96 (98)
T 2dir_A           62 LNSENKVDLTNPQYTVVVEIIK--A------VCCLSVVKSGPS   96 (98)
T ss_dssp             HCTTCEECSSSCSEEEEEEEET--T------EEEEEEEECCCT
T ss_pred             hCCCCeeEcCCCCEEEEEEEeC--C------EEEEEEcccccc
Confidence            7778999999999999999999  8      999999999975

>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1

Probab=98.41  E-value=1.6e-06  Score=82.56  Aligned_cols=107  Identities=15%  Similarity=0.125  Sum_probs=83.8

Q ss_pred             cceEEEEeccCCCCCHHHHHHHHHHhhccCCcCCceeEEEeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCC-C--
Q 020116          145 NGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSR-P--  221 (331)
Q Consensus       145 ~Gv~fi~f~~~~~~dP~~lv~~I~~dv~~~~~~~tRfi~Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~-p--  221 (331)
                      .|-+|+.   .  .++.+++.++         +..=-|+++.|+.. |..++++|.+.+..++..++.       + .  
T Consensus        48 ~gri~V~---~--~~~~~~~~~L---------~~vfGI~~~s~v~~-~~~dle~I~~~~~~~~~~~~~-------~~~~~  105 (307)
T 1vbk_A           48 HGRIIVK---T--NSPKEAANVL---------VRVFGIVSISPAME-VEASLEKINRTALLMFRKKAK-------EVGKE  105 (307)
T ss_dssp             TTEEEEE---C--SCHHHHHHHH---------TTSTTEEEEEEEEE-EECCHHHHHHHHHHHHHHHHH-------HHTCS
T ss_pred             CCEEEEE---c--CCHHHHHHHH---------hhcCCeEEEEEEEE-eCCCHHHHHHHHHHHHHHhhc-------ccCCC
Confidence            6777774   2  2677655544         12345788899987 568999999999999877542       2 2  


Q ss_pred             -ceeEEEEcccCccccccCCCCCCCCccccccCChhHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 020116          222 -VKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLP  290 (331)
Q Consensus       222 -~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~~VA~~V~~~~~~hkVdLknPd~~IlVEV~k  290 (331)
                       .||+|+.++++.          +      -.++.+++-..|++.|.+.. +.+|||+|||++|.|||..
T Consensus       106 ~~tF~Vr~kR~~k----------~------~~~~S~ei~r~vG~~i~~~~-~~~Vdl~~PD~~i~VEi~~  158 (307)
T 1vbk_A          106 RPKFRVTARRITK----------E------FPLDSLEIQAKVGEYILNNE-NCEVDLKNYDIEIGIEIMQ  158 (307)
T ss_dssp             SCEEEEEEEESSS----------C------SSSCHHHHHHHHHHHHHHHS-SCEECSSSCSEEEEEEEET
T ss_pred             CceEEEEEEeCCC----------C------CCCChHHHHHHHHHHHHHHh-CCceeeeCCCEEEEEEEEc
Confidence             399999999992          2      56888999999999998765 7899999999999999998

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1

Probab=98.39  E-value=2.4e-06  Score=84.36  Aligned_cols=110  Identities=13%  Similarity=0.169  Sum_probs=86.0

Q ss_pred             cceEEEEeccCCCCCHHHHHHHHHHhhccCCcCCceeEEEeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCCCcee
Q 020116          145 NGLLLLTFPREHSPNTINIVSNIFQSLGSGSLKSPVWCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKF  224 (331)
Q Consensus       145 ~Gv~fi~f~~~~~~dP~~lv~~I~~dv~~~~~~~tRfi~Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tf  224 (331)
                      .|.++|...   ..++.+++.++         +..=-|+++.|+.. |..++++|.+.+..++...+       ....||
T Consensus        57 ~gri~v~~~---~~~~~~~~~~L---------~~vfGI~~~~~v~~-~~~dle~I~~~~~~~~~~~~-------~~~~tF  116 (413)
T 2c5s_A           57 HDRMYIQLN---GEDHEAVSERL---------KDVFGIHKFNLAMK-VPSELEDIKKGALAAFLQVK-------GDVKTF  116 (413)
T ss_dssp             SSCEEEECT---TCCHHHHHHHH---------TTCTTEEEEEEEEE-EESSHHHHHHHHHHHHHTCC-------SCCCEE
T ss_pred             CCEEEEEeC---CCCHHHHHHHH---------hhCCCeEEEEEEEE-ecCCHHHHHHHHHHHHHhhc-------cCCCcE
Confidence            577777542   23566654443         23345788899977 46899999999999888655       244699


Q ss_pred             EEEEcccCccccccCCCCCCCCccccccCChhHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEee
Q 020116          225 AVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLP  290 (331)
Q Consensus       225 aI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~~VA~~V~~~~~~hkVdLknPd~~IlVEV~k  290 (331)
                      +|+.++++           .     +-.++.++|-..|++.|....++.+|||+|||+.|.|||.+
T Consensus       117 ~V~~kR~~-----------k-----~f~~~S~ei~r~vG~~i~~~~~~~~Vdl~~Pdi~i~vEI~~  166 (413)
T 2c5s_A          117 KITVHRSY-----------K-----HFPMRTMELLPEIGGHILENTEDITVDVHNPDVNVRVEIRS  166 (413)
T ss_dssp             EEEEEECC-----------T-----TCSSCHHHHHHHHHHHHHTTSSSCEECSSSCSEEEEEEECS
T ss_pred             EEEEEECC-----------C-----CCCCChHHHHHHHHHHHHHhCCCCeeccCCCCeEEEEEEEe
Confidence            99999999           2     23789999999999999887668899999999999999998

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=96.37  E-value=0.0044  Score=58.80  Aligned_cols=95  Identities=18%  Similarity=0.148  Sum_probs=69.4

Q ss_pred             ceeEEEeeeeeeEe--e-cC-HHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCC
Q 020116          179 PVWCHRIFPIQATC--V-LK-EKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLD  254 (331)
Q Consensus       179 tRfi~Rl~PI~~tc--~-A~-~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~  254 (331)
                      .|...|++-+-..+  . .+ +++|.+.+..+--..+       ....||+|..++.+           +      ..++
T Consensus        70 lR~a~rvl~~~~~~~~~~~~~~~~L~~~~~~~~w~~~-------~~~~tF~V~~~~~~-----------~------~~f~  125 (354)
T 3tma_A           70 LRLAHHLVLFRARLLLSREDPLGALERAALALPWPEL-------EGAGSFRVEARREG-----------E------HPFT  125 (354)
T ss_dssp             CSSCSCEEEEEEEEECCSSSHHHHHHHHHHTSCCTTH-------HHHCCEEEEEEEES-----------C------CSSC
T ss_pred             cCCccEEEEEeeeccCCchhhHHHHHHHHHhCchhhc-------CCCCCEEEEEEEcC-----------C------CCCC
Confidence            67777776666666  4 36 7888887765411111       12359999999877           3      5677


Q ss_pred             hhHHHHHHHHHhhhcCCCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEee
Q 020116          255 RNKCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  306 (331)
Q Consensus       255 R~~vI~~VA~~V~~~~~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv  306 (331)
                      ..+|-+.|++.+.... +.+||+++||+.|.|++.+  +      .|.+++-
T Consensus       126 s~~vk~~i~~~l~~~~-g~~v~~~~pd~~i~v~i~~--d------~~~l~~d  168 (354)
T 3tma_A          126 SPEVERRVGEALHRAY-GVPVDLKRPAVRVRVDVRG--E------EAFLGVQ  168 (354)
T ss_dssp             HHHHHHHHHHHHHHHH-CCCBCSSSCSEEEEEEEET--T------EEEEEEE
T ss_pred             HHHHHHHHHHHHHHhh-CCcccCCCCCEEEEEEEEC--C------EEEEEEE
Confidence            8889899998887642 4569999999999999999  8      7877774

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=96.30  E-value=0.01  Score=57.86  Aligned_cols=95  Identities=17%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             eeEEEeeeeeeEeec-CHHHHHHHHHHH-HHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhH
Q 020116          180 VWCHRIFPIQATCVL-KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNK  257 (331)
Q Consensus       180 Rfi~Rl~PI~~tc~A-~~~~i~~~~~~l-~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~  257 (331)
                      |-..|++-+-..+.+ +.++|...+..+ +..||+       ...||+|..++++           +      ..++..+
T Consensus        64 R~a~RVl~~l~~f~a~~~~~L~~~~~~i~w~~~l~-------~~~tF~V~~~~~~-----------s------~~fss~~  119 (393)
T 3k0b_A           64 RVADRVKIVVGVFKATTFDELFEKTKALPWEDYLP-------LDAQFPVAGKSVK-----------S------TLYSVPD  119 (393)
T ss_dssp             SSCSCEEEEEEEEECSSHHHHHHHHHTSCGGGTCC-------TTCBCCEEEEEES-----------S------SCCCHHH
T ss_pred             cceeeEEEEEEEEecCCHHHHHHHHHhCCHHHhCC-------CCCeEEEEEEEec-----------C------CCCCHHH
Confidence            555666655556655 899999988887 567773       4569999987766           3      4555544


Q ss_pred             HHHHHHHHh----hhcC-CCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEee
Q 020116          258 CFTIVAAAV----KEVV-SDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  306 (331)
Q Consensus       258 vI~~VA~~V----~~~~-~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv  306 (331)
                      +-..|.++|    +... ....||+++||+.|.|++..  +      .|-+++=
T Consensus       120 ~~~~vkdAI~d~~~~~~~~rp~vd~~~Pd~~i~v~l~~--~------~~~~~ld  165 (393)
T 3k0b_A          120 CQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILK--D------EVTLTID  165 (393)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCTTCCSCSSBCCEEEEEET--T------EEEEEEE
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEEC--C------EEEEEEe
Confidence            444444444    3321 12379999999999999999  8      8888875

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=95.81  E-value=0.0095  Score=58.01  Aligned_cols=96  Identities=16%  Similarity=0.121  Sum_probs=64.8

Q ss_pred             ceeEEEeeeeeeEeec-CHHHHHHHHHHH-HHhhcccccccCCCCceeEE-EEcccCccccccCCCCCCCCccccccCCh
Q 020116          179 PVWCHRIFPIQATCVL-KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAV-GYNRRGFEEKQNKIPKDTKDSDVSALLDR  255 (331)
Q Consensus       179 tRfi~Rl~PI~~tc~A-~~~~i~~~~~~l-~~~~F~~~~~~~~~p~tfaI-~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R  255 (331)
                      +|-..|++-+-..+.+ +.++|...+..+ +..||+       ...||+| ..++.+           +      ..++.
T Consensus        53 ~R~a~RVl~~l~~f~a~~~~~Ly~~~~~i~W~~~l~-------~~~tf~V~~~~~~~-----------s------~~~~s  108 (384)
T 3ldg_A           53 LRSADRIKIVVGEFPARTFEELFQGVYALDWENYLP-------LGCQFPVAKAKSVK-----------S------KLHNE  108 (384)
T ss_dssp             CSSCSEEEEEEEEEECSSHHHHHHHHHHSCGGGTCC-------TTCBCCBCCCEEES-----------C------SCCCH
T ss_pred             cccceeEEEEEEEEecCCHHHHHHHHHcCCHHHhCC-------CCCeEEEEeeeecC-----------C------CCCCH
Confidence            3566666666666755 899999998887 677773       4569999 765555           2      33443


Q ss_pred             hHHH----HHHHHHhhhcC-CCCe--eeCCCCCeEEEEEEeeCCCCCCCccEEEEEee
Q 020116          256 NKCF----TIVAAAVKEVV-SDSA--VDLKSPELSVLVELLPISGLPSELLVVGVSIL  306 (331)
Q Consensus       256 ~~vI----~~VA~~V~~~~-~~hk--VdLknPd~~IlVEV~k~~~~~~~~~v~giSVv  306 (331)
                      .++-    ++|.+.+.... ....  ||+++||+.|.|.+.+  +      .|-||+=
T Consensus       109 ~~~~~~vkdAi~d~~~~~~~~r~~~~v~~~~pd~~i~v~~~~--~------~~~~~ld  158 (384)
T 3ldg_A          109 PSIQGITKKAIVKKLQHYFHRPDSVPLPENGPEFKIEISLLK--D------QARVMID  158 (384)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCTTSCCCCCSCBCEEEEEEET--T------EEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhCCCCccccCCCCCCEEEEEEEEC--C------EEEEEEe
Confidence            3332    33444444321 1112  9999999999999999  8      8888885

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=95.32  E-value=0.06  Score=56.34  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=68.7

Q ss_pred             eeEEEeeeeeeEeec-CHHHHHHHHHHH-HHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhH
Q 020116          180 VWCHRIFPIQATCVL-KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNK  257 (331)
Q Consensus       180 Rfi~Rl~PI~~tc~A-~~~~i~~~~~~l-~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~  257 (331)
                      |-..|++=.-..+.+ +.++|...+..+ +..||+       ...||+|.++.++           +  ...++.+.-..
T Consensus        53 R~a~Rvl~~l~~f~~~~~~~L~~~~~~~~w~~~~~-------~~~tf~V~~~~~~-----------~--~~~~~~~~~~~  112 (703)
T 3v97_A           53 RLASRIMLPLGECKVYSDLDLYLGVQAINWTEMFN-------PGATFAVHFSGLN-----------D--TIRNSQYGAMK  112 (703)
T ss_dssp             SSCSEEEEEEEEEECSSHHHHHHHHHTSCHHHHBC-------TTCCEEEEEECCC-----------S--SCCSHHHHHHH
T ss_pred             CceeEEEEEEEEEecCCHHHHHHHHHcCCHHHhCC-------CCceEEEEEEEec-----------C--CcCChHHHHHH
Confidence            556666666666755 899999988887 777883       5569999998877           1  00012222234


Q ss_pred             HHHHHHHHhhhcC-CCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEee
Q 020116          258 CFTIVAAAVKEVV-SDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  306 (331)
Q Consensus       258 vI~~VA~~V~~~~-~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv  306 (331)
                      |-++|.+.+.... ....||+++||+.|.|.+.+  +      .|-+|+=
T Consensus       113 vk~ai~d~~~~~~g~rp~v~~~~pd~~i~v~l~~--~------~~~l~ld  154 (703)
T 3v97_A          113 VKDAIVDAFTRKNLPRPNVDRDAPDIRVNVWLHK--E------TASIALD  154 (703)
T ss_dssp             HHHHHHHHHHTTTCCCCCBCSSSCSEEEEEEEET--T------EEEEEEE
T ss_pred             HHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEEC--C------EEEEEEe
Confidence            4456666655431 12369999999999999999  8      8999985

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=95.15  E-value=0.099  Score=50.10  Aligned_cols=95  Identities=26%  Similarity=0.248  Sum_probs=65.1

Q ss_pred             ceeEEEeeeeeeEeec----------CHHHHHHHHHHH-HHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCc
Q 020116          179 PVWCHRIFPIQATCVL----------KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDS  247 (331)
Q Consensus       179 tRfi~Rl~PI~~tc~A----------~~~~i~~~~~~l-~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~  247 (331)
                      +|..+|++-+-..+.+          +.++|...+..+ +..||       ....||+|..++.+           +   
T Consensus        72 ~R~a~rv~~~~~~~~~~~~~~~~~~~~~~~L~~~v~~~~w~~~l-------~~~~tF~V~~~~~~-----------~---  130 (373)
T 3tm4_A           72 SRLLHRVIIEIASEKFNGIEKDESEEALKRIKDFVSSLPVEQFV-------KVSETFAVRSFRKG-----------D---  130 (373)
T ss_dssp             CSSCSEEEEEEEEEECTTTTTSCHHHHHHHHHHHHHTSCGGGGS-------CTTSEEEEEEEEES-----------S---
T ss_pred             hhhHhheEEEEEEeEeccccccccCCCHHHHHHHHHhCCHHHhC-------CCCCcEEEEEEECC-----------C---
Confidence            4777787777666644          577777766654 44455       34569999998877           2   


Q ss_pred             cccccCChhHHHHHHHHHhh----hcCCCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEee
Q 020116          248 DVSALLDRNKCFTIVAAAVK----EVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  306 (331)
Q Consensus       248 ~~~~~l~R~~vI~~VA~~V~----~~~~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv  306 (331)
                         ..++..++-..|.++|.    ..+. ..||+++||+.|.|.+.+  +      .+-+++-
T Consensus       131 ---~~~~s~~~~~~vk~aIvd~~~~~g~-~~v~~~~p~~~i~~~~~~--d------~~~~~ld  181 (373)
T 3tm4_A          131 ---HNITSIDIARTVGEAIFERLSRFGT-PLVNLDHPAVIFRAELIK--D------VFFLGID  181 (373)
T ss_dssp             ---CSSCHHHHHHHHHHHHHHHHHTTSC-CEECSSSCSEEEEEEEET--T------EEEEEEE
T ss_pred             ---CcCCHHHHHHHHHHHHHHHHHHhCC-CcccCCCCCeEEEEEEEC--C------EEEEEEE
Confidence               34555455455555543    3222 589999999999999999  8      7777774

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=94.69  E-value=0.091  Score=50.91  Aligned_cols=95  Identities=14%  Similarity=0.161  Sum_probs=63.9

Q ss_pred             eeEEEeeeeeeEeec-CHHHHHHHHHHH-HHhhcccccccCCCCceeEEE-EcccCccccccCCCCCCCCccccccCChh
Q 020116          180 VWCHRIFPIQATCVL-KEKELQATVSKL-VLQFVNDEQNKLSRPVKFAVG-YNRRGFEEKQNKIPKDTKDSDVSALLDRN  256 (331)
Q Consensus       180 Rfi~Rl~PI~~tc~A-~~~~i~~~~~~l-~~~~F~~~~~~~~~p~tfaI~-~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~  256 (331)
                      |...|++-+-..+.+ +.++|...+..+ +..||+       ...||+|. .++++           +      ..++..
T Consensus        57 R~a~RVl~~l~~f~~~~~~~L~~~~~~i~w~~~~~-------~~~tf~V~~~~~~~-----------s------~~~~~~  112 (385)
T 3ldu_A           57 RCAERVHLKIAEFEAKSFDELFENTKRINWSRYIP-------YGAQFPISKASSIK-----------S------KLYSTP  112 (385)
T ss_dssp             SSCSCCEEEEEEEECSSHHHHHHHHHTSCGGGTSC-------TTCBCCEEEEEEES-----------S------SCCCHH
T ss_pred             CceeEEEEEeeeEecCCHHHHHHHHHhCCHHHhCC-------CCceEEEEeecccC-----------C------CcCcHH
Confidence            555555544455655 899999988877 667773       55699999 77766           3      444443


Q ss_pred             HHHHH----HHHHhhhcC-CCCeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEee
Q 020116          257 KCFTI----VAAAVKEVV-SDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL  306 (331)
Q Consensus       257 ~vI~~----VA~~V~~~~-~~hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv  306 (331)
                      ++-..    |.+.+.... ....||+++||+.|.|.+.+  +      .|-+++=
T Consensus       113 ~~~~~vkdAIvd~~~~~~~~rp~v~~~~p~~~i~~~i~~--~------~~~~~lD  159 (385)
T 3ldu_A          113 DVQAIVKKAIVESLKKSYLEDGLLKEDKEKYPIFVFIHK--D------KVTISID  159 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCSCCCCCSCBCCEEEEEET--T------EEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhhCCCCCCCCCCCCEEEEEEEEC--C------EEEEEEe
Confidence            33333    333333321 22379999999999999999  8      8888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	331
d2dira1	85	d.308.1.3 (A:8-92) THUMP domain-containing protein	7e-04

>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: Minimal THUMP
domain: THUMP domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 7e-04
 Identities = 16/110 (14%), Positives = 39/110 (35%), Gaps = 30/110 (27%)

Query: 197 KELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRN 256
           ++++      +  +             F + Y  R                     ++R 
Sbjct: 5   EDMKKYAETFLEPWFKAPNKG-----TFQIVYKSRNNSH-----------------VNRE 42

Query: 257 KCFTIVAAAVKEVVSDSAVDLKSPELSVLVELLPISGLPSELLVVGVSIL 306
           +    +A  V  + S++ VDL +P+ +V+VE++          V  +S++
Sbjct: 43  EVIRELAGIVCTLNSENKVDLTNPQYTVVVEIIKA--------VCCLSVV 84

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	331
d2dira1	85	THUMP domain-containing protein 1 {Human (Homo sap	99.82
d1vbka2	175	Hypothetical protein PH1313, N-terminal domain {Ar	98.99
d2c5sa2	171	Thiamine biosynthesis protein ThiI, N-terminal dom	98.87

>d2dira1 d.308.1.3 (A:8-92) THUMP domain-containing protein 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: Minimal THUMP
domain: THUMP domain-containing protein 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.5e-20  Score=146.08  Aligned_cols=85  Identities=19%  Similarity=0.349  Sum_probs=78.8

Q ss_pred             ecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhHHHHHHHHHhhhcCCC
Q 020116          193 VLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFTIVAAAVKEVVSD  272 (331)
Q Consensus       193 ~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~~VA~~V~~~~~~  272 (331)
                      +|++++|.+.|..++++||+.     .++.||+|.+++|+           |      +.|+|++|++.||++|.+..++
T Consensus         1 ~A~ledi~k~a~~l~~~~~~~-----~~~~TF~V~~krr~-----------~------~~l~s~ev~~~vg~~v~~~~~~   58 (85)
T d2dira1           1 KAFLEDMKKYAETFLEPWFKA-----PNKGTFQIVYKSRN-----------N------SHVNREEVIRELAGIVCTLNSE   58 (85)
T ss_dssp             CHHHHHHHHHHHHHHHHHHST-----TCCCEEEEEEECSS-----------C------CSSCHHHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHHHHHHhcc-----CCCceEEEEEEeCC-----------C------CCCCHHHHHHHHHHHHHhhCCC
Confidence            488999999999999999962     36789999999999           6      7999999999999999888889


Q ss_pred             CeeeCCCCCeEEEEEEeeCCCCCCCccEEEEEeec
Q 020116          273 SAVDLKSPELSVLVELLPISGLPSELLVVGVSILP  307 (331)
Q Consensus       273 hkVdLknPd~~IlVEV~k~~~~~~~~~v~giSVv~  307 (331)
                      |+|||+|||++|+|||++  +      +||||||.
T Consensus        59 ~~VdL~~Pd~~I~Vev~~--~------~~~iSvv~   85 (85)
T d2dira1          59 NKVDLTNPQYTVVVEIIK--A------VCCLSVVK   85 (85)
T ss_dssp             CEECSSSCSEEEEEEEET--T------EEEEEEEE
T ss_pred             ceeeccCCCEEEEEEEeC--C------EEEEEEeC
Confidence            999999999999999999  9      99999984

>d1vbka2 d.308.1.1 (A:1-175) Hypothetical protein PH1313, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: THUMP domain
domain: Hypothetical protein PH1313, N-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.99  E-value=2.1e-09  Score=92.54  Aligned_cols=90  Identities=18%  Similarity=0.163  Sum_probs=75.0

Q ss_pred             eEEEeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhHHHH
Q 020116          181 WCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFT  260 (331)
Q Consensus       181 fi~Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~  260 (331)
                      -|..+.|+. .|..++++|.+++..++..++....   .++.||+|..++++           .     .-.++.+++-.
T Consensus        70 GI~~~s~v~-~ve~~le~I~~~a~~~~~~~~~~~~---~~~~tF~V~~kR~~-----------k-----~f~~tS~ei~~  129 (175)
T d1vbka2          70 GIVSISPAM-EVEASLEKINRTALLMFRKKAKEVG---KERPKFRVTARRIT-----------K-----EFPLDSLEIQA  129 (175)
T ss_dssp             TEEEEEEEE-EEECCHHHHHHHHHHHHHHHHHHHT---CSSCEEEEEEEESS-----------S-----CSSSCHHHHHH
T ss_pred             CCCeEEEEE-EEcCCHHHHHHHHHHHHHHHHHhhc---cCCCcEEEEEEecC-----------C-----CCCCChHHHHH
Confidence            466667874 6789999999999999998875322   35579999999988           2     14799999999


Q ss_pred             HHHHHhhhcCCCCeeeCCCCCeEEEEEEeeCCC
Q 020116          261 IVAAAVKEVVSDSAVDLKSPELSVLVELLPISG  293 (331)
Q Consensus       261 ~VA~~V~~~~~~hkVdLknPd~~IlVEV~k~~~  293 (331)
                      .||+.|... ++++|||+|||++|.|||.+  +
T Consensus       130 ~vG~~i~~~-~~~~VdL~nPd~~i~vEI~~--~  159 (175)
T d1vbka2         130 KVGEYILNN-ENCEVDLKNYDIEIGIEIMQ--G  159 (175)
T ss_dssp             HHHHHHHHH-SSCEECSSSCSEEEEEEEET--T
T ss_pred             HHHHHHhhc-CCCeeeccCCCEEEEEEEEe--C
Confidence            999988764 78999999999999999999  7

>d2c5sa2 d.308.1.1 (A:3-173) Thiamine biosynthesis protein ThiI, N-terminal domain {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a+b)
fold: THUMP domain
superfamily: THUMP domain-like
family: THUMP domain
domain: Thiamine biosynthesis protein ThiI, N-terminal domain
species: Bacillus anthracis [TaxId: 1392]

Probab=98.87  E-value=1.1e-08  Score=87.81  Aligned_cols=87  Identities=16%  Similarity=0.193  Sum_probs=72.1

Q ss_pred             eEEEeeeeeeEeecCHHHHHHHHHHHHHhhcccccccCCCCceeEEEEcccCccccccCCCCCCCCccccccCChhHHHH
Q 020116          181 WCHRIFPIQATCVLKEKELQATVSKLVLQFVNDEQNKLSRPVKFAVGYNRRGFEEKQNKIPKDTKDSDVSALLDRNKCFT  260 (331)
Q Consensus       181 fi~Rl~PI~~tc~A~~~~i~~~~~~l~~~~F~~~~~~~~~p~tfaI~~~~Rn~~~~e~~~~~~n~~~~~~~~l~R~~vI~  260 (331)
                      =|..+.|+.. |..++++|.+.+..++....       .++.||+|+.++++           .     +-.++..++-.
T Consensus        69 GI~~~s~~~~-~~~dle~I~~~a~~~~~~~~-------~~~~tF~Vr~kR~~-----------k-----~f~~tS~ei~~  124 (171)
T d2c5sa2          69 GIHKFNLAMK-VPSELEDIKKGALAAFLQVK-------GDVKTFKITVHRSY-----------K-----HFPMRTMELLP  124 (171)
T ss_dssp             TEEEEEEEEE-EESSHHHHHHHHHHHHHTCC-------SCCCEEEEEEEECC-----------T-----TCSSCHHHHHH
T ss_pred             CccEEEEEEE-eCCCHHHHHHHHHHHHHHhc-------cCCceEEEEEEECC-----------C-----CCCCCCHHHHH
Confidence            3677778775 56899999998888876654       35679999999888           3     23689999999


Q ss_pred             HHHHHhhhcCCCCeeeCCCCCeEEEEEEeeCCC
Q 020116          261 IVAAAVKEVVSDSAVDLKSPELSVLVELLPISG  293 (331)
Q Consensus       261 ~VA~~V~~~~~~hkVdLknPd~~IlVEV~k~~~  293 (331)
                      .|+++|-...++.+|||+|||++|.|||.+  +
T Consensus       125 ~lG~~il~~~~~~kVdL~nPd~~i~veI~~--~  155 (171)
T d2c5sa2         125 EIGGHILENTEDITVDVHNPDVNVRVEIRS--G  155 (171)
T ss_dssp             HHHHHHHTTSSSCEECSSSCSEEEEEEECS--S
T ss_pred             HHHHHHHHhCCCCeeeccCCCEEEEEEEEc--C
Confidence            999999776678999999999999999999  7