Citrus Sinensis ID: 020132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQHSSSSWPENGEYSWC
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEccccEEEEcccccccccccHHHHHHHHHHHHccccccEEEEcccEEEccccccccccccccHHHHHHHHHHHcccEEEEEcccccccccccccccccEEcccccHHHHHHHHHccccccccccHHHHHHccccEEEccccccccccEEEEccccccccccccccccEEEEEEEccEEEEEEEcccccccccHHHHHHHHHHHccccEEEEEcccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccccEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHEEcccHHHHHHHHHHHHHHccccEEEEcccEEEEEEcccccccccccccHHHHHHHHHccccccEEEEEEEEEEcccccEEEEcccccHHHHHHHHHHHcccEEEEEEccccEEcccccccccHcccccccHHHHHHHHHHcccccccccHHHHHHccccEEEEEccccccccEEEEccccccHHHHHHHcccEcEEEEcccEEEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEcccccc
Coil and Loop (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFlsnvdsghatesfTDFVVGHGELWSAQMLAAVVRKNgidckwmdtrevlivnptssnqvdpdfseSEKRLEKWfsqspsntiiatgfiastpdnipttlkrdgsdFSAAIMGALLRAHQVtiwtdvdgvysadprkVSEAVILRTLSYQEAWEMSYFganvlhprtiipvmrydipIVIRNifnlsvpgimicrppvdenedeqiidspvkgfatiDNLALVNvegtgmagvpgtaNAIFGAVKDVGANVIMISQASsehsvcfavpEKEVKAVAEALESKFREALnagrlsqhsssswpengeyswc
Flexible Loop (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLivnptssnqvdpdFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREalnagrlsqhsssswpengeyswc
Low Complexity Region (SEG)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFavpekevkavaealeskFREALNAGRLSQHSSSSWPENGEYSWC
Disordered region (IsUnstruct)
***VRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN***************************NTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAV**********************************
Disordered Region (DISOPRED)
MFQ*RNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD*****QIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQHSSSSWPE*G*YSWC
Disordered Region (DISEMBL)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN**************KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN*********************
Disordered Region (DISPRO)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQHSSSSWPENGEYSWC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFQVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQHSSSSWPENGEYSWC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
P37142	921	Bifunctional aspartokinas	N/A	no	0.936	0.335	0.786	1e-144
Q9SA18	911	Bifunctional aspartokinas	yes	no	0.866	0.313	0.840	1e-143
O81852	916	Bifunctional aspartokinas	no	no	0.906	0.326	0.796	1e-143
P49079	920	Bifunctional aspartokinas	N/A	no	0.863	0.309	0.802	1e-137
P49080	917	Bifunctional aspartokinas	N/A	no	0.863	0.310	0.774	1e-132
P27725	819	Bifunctional aspartokinas	N/A	no	0.818	0.329	0.378	4e-50
P00561	820	Bifunctional aspartokinas	N/A	no	0.830	0.334	0.379	2e-48
Q57991	473	Probable aspartokinase OS	yes	no	0.803	0.560	0.392	2e-45
P57290	816	Bifunctional aspartokinas	yes	no	0.845	0.341	0.327	2e-43
P44505	815	Bifunctional aspartokinas	yes	no	0.757	0.306	0.394	7e-42

>sp|P37142|AKH_DAUCA Bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic (Fragment) OS=Daucus carota PE=1 SV=1

 Score =  510 bits (1313), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 243/309 (78%), Positives = 271/309 (87%)

Query: 7   YVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66
           +++ L ++ I       +   +GHATESF+DFVVGHGELWSAQ+L+ V+RKNG DC WMD
Sbjct: 178 FLTRLQHDVITLKAMLRAIYIAGHATESFSDFVVGHGELWSAQLLSFVIRKNGGDCNWMD 237

Query: 67  TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           TR+VL+VNP  SNQVDPD+ ESEKRLEKWFS +   TI+ATGFIASTP NIPTTLKRDGS
Sbjct: 238 TRDVLVVNPAGSNQVDPDYLESEKRLEKWFSSNQCQTIVATGFIASTPQNIPTTLKRDGS 297

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           DFSAAIMGALLRA QVTIWTDV+GVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHP
Sbjct: 298 DFSAAIMGALLRAGQVTIWTDVNGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHP 357

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTI PVMRYDIPIVIRNIFNLS PG MICR  V E ED   ++S VKGFATIDNLAL+NV
Sbjct: 358 RTINPVMRYDIPIVIRNIFNLSAPGTMICRESVGETEDGLKLESHVKGFATIDNLALINV 417

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306
           EGTGMAGVPGTA AIFGAVKDVGANVIMISQASSEHS+CFAVPE EVKAVA+ALE++FR+
Sbjct: 418 EGTGMAGVPGTATAIFGAVKDVGANVIMISQASSEHSICFAVPESEVKAVAKALEARFRQ 477

Query: 307 ALNAGRLSQ 315
           AL+AGRLSQ
Sbjct: 478 ALDAGRLSQ 486

Daucus carota (taxid: 4039)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3

>sp|Q9SA18|AKH1_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH1 PE=1 SV=1

 Score =  508 bits (1307), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 242/288 (84%), Positives = 265/288 (92%), Gaps = 2/288 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQMLAAVVRK+G+DC WMD R+VL+V PTSSNQVDPDF E
Sbjct: 191 AGHATESFSDFVVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVE 250

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLEKWF+Q+ +  IIATGFIASTP NIPTTLKRDGSDFSAAIM AL R+HQ+TIWTD
Sbjct: 251 SEKRLEKWFTQNSAKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTD 310

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVM+YDIPIVIRNIFNL
Sbjct: 311 VDGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNL 370

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICR    ++ED   +D+PVKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVK+
Sbjct: 371 SAPGTMICRQI--DDEDGFKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKE 428

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEVKAV+EAL S+FR+AL  GRLSQ
Sbjct: 429 VGANVIMISQASSEHSVCFAVPEKEVKAVSEALNSRFRQALAGGRLSQ 476

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1

 Score =  507 bits (1306), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 246/309 (79%), Positives = 273/309 (88%), Gaps = 10/309 (3%)

Query: 15  FIRSTYNFLSNVDS--------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD 66
           F+   +N +SN+ +        GHA+ESF+DFV GHGELWSAQML+ VVRK G++CKWMD
Sbjct: 175 FLSHLHNDISNLKAMLRAIYIAGHASESFSDFVAGHGELWSAQMLSYVVRKTGLECKWMD 234

Query: 67  TREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           TR+VLIVNPTSSNQVDPDF ESEKRL+KWFS +PS  IIATGFIASTP NIPTTLKRDGS
Sbjct: 235 TRDVLIVNPTSSNQVDPDFGESEKRLDKWFSLNPSKIIIATGFIASTPQNIPTTLKRDGS 294

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           DFSAAIMGALLRA QVTIWTDVDGVYSADPRKV+EAVIL+TLSYQEAWEMSYFGANVLHP
Sbjct: 295 DFSAAIMGALLRARQVTIWTDVDGVYSADPRKVNEAVILQTLSYQEAWEMSYFGANVLHP 354

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTIIPVMRY+IPIVIRNIFNLS PG +IC+PP  E++ +  + +PVKGFATIDNLAL+NV
Sbjct: 355 RTIIPVMRYNIPIVIRNIFNLSAPGTIICQPP--EDDYDLKLTTPVKGFATIDNLALINV 412

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306
           EGTGMAGVPGTA+ IFG VKDVGANVIMISQASSEHSVCFAVPEKEV AV+EAL S+F E
Sbjct: 413 EGTGMAGVPGTASDIFGCVKDVGANVIMISQASSEHSVCFAVPEKEVNAVSEALRSRFSE 472

Query: 307 ALNAGRLSQ 315
           AL AGRLSQ
Sbjct: 473 ALQAGRLSQ 481

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49079|AKH1_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1

 Score =  487 bits (1254), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 231/288 (80%), Positives = 260/288 (90%), Gaps = 3/288 (1%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+  ++K+G  C WMDTREVL+VNP+ +NQVDPD+ E
Sbjct: 201 AGHATESFSDFVVGHGELWSAQMLSYAIQKSGTPCSWMDTREVLVVNPSGANQVDPDYLE 260

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLEKWFS+ P+ TIIATGFIASTP+NIPTTLKRDGSDFSAAI+G+L++A QVTIWTD
Sbjct: 261 SEKRLEKWFSRCPAETIIATGFIASTPENIPTTLKRDGSDFSAAIIGSLVKARQVTIWTD 320

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGV+SADPRKVSEAVIL TLSYQEAWEMSYFGANVLHPRTIIPVM+Y+IPIVIRNIFN 
Sbjct: 321 VDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTIIPVMKYNIPIVIRNIFNT 380

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MIC+ P +EN D   +++ VK FATID LALVNVEGTGMAGVPGTANAIFGAVKD
Sbjct: 381 SAPGTMICQQPANENGD---LEACVKAFATIDKLALVNVEGTGMAGVPGTANAIFGAVKD 437

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEV  V+ AL ++FREAL AGRLS+
Sbjct: 438 VGANVIMISQASSEHSVCFAVPEKEVALVSAALHARFREALAAGRLSK 485

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P49080|AKH2_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Zea mays GN=AKHSDH2 PE=2 SV=1

 Score =  471 bits (1212), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 223/288 (77%), Positives = 252/288 (87%), Gaps = 3/288 (1%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+  ++K+G  C WMDTREVL+V P+  NQVDPD+ E
Sbjct: 198 AGHATESFSDFVVGHGELWSAQMLSYAIKKSGAPCSWMDTREVLVVTPSGCNQVDPDYLE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
            EKRL+KWFS+ P+  I+ATGFIAST  NIPTTLKRDGSDFSAAI+G+L+RA QVTIWTD
Sbjct: 258 CEKRLQKWFSRQPAEIIVATGFIASTAGNIPTTLKRDGSDFSAAIVGSLVRARQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGV+SADPRKVSEAVIL TLSYQEAWEMSYFGANVLHPRTIIPVM+ +IPIVIRN+FNL
Sbjct: 318 VDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTIIPVMKDNIPIVIRNMFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MIC+ P +EN D   +D+ VK FAT+DNLALVNVEGTGMAGVPGTA+AIF AVKD
Sbjct: 378 SAPGTMICKQPANENGD---LDACVKSFATVDNLALVNVEGTGMAGVPGTASAIFSAVKD 434

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEV  V+  L  +FREAL AGRLS+
Sbjct: 435 VGANVIMISQASSEHSVCFAVPEKEVAVVSAELHDRFREALAAGRLSK 482

Zea mays (taxid: 4577)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P27725|AK1H_SERMA Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1

 Score =  198 bits (504), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 110/291 (37%), Positives = 159/291 (54%), Gaps = 21/291 (7%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G   +S    ++  GE  S  ++  V R  G          V ++NP         + ES
Sbjct: 112 GQCPDSVNAAIICRGEKLSIAIMEGVFRAKGY--------PVTVINPVEKLLAQGHYLES 163

Query: 89  -----EKRLEKWFSQSPSNTII-ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQV 142
                E  L    +  P++ I+   GF A         L R+GSD+SAA++ A LRA   
Sbjct: 164 TVDIAESTLRIAAAAIPADHIVLMAGFTAGNDKGELVVLGRNGSDYSAAVLAACLRADCC 223

Query: 143 TIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
            IWTDVDGVY+ DPR V +A +L+++SYQEA E+SYFGA VLHPRTI P+ ++ IP +I+
Sbjct: 224 EIWTDVDGVYTCDPRTVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIK 283

Query: 203 NIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF 262
           N  N   PG +I +   D        D PVKG   ++N+A++NV G GM G+ G A  +F
Sbjct: 284 NTSNPQAPGTLIGKDSTDA-------DMPVKGITNLNNMAMINVSGPGMKGMVGMAARVF 336

Query: 263 GAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
             +   G +V++I+Q+SSE+S+ F VP+ E++    ALE +F   L  G L
Sbjct: 337 AVMSRAGISVVLITQSSSEYSISFCVPQGELQRARRALEEEFYLELKDGVL 387

Serratia marcescens (taxid: 615)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P00561|AK1H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2

 Score =  192 bits (489), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 109/287 (37%), Positives = 167/287 (58%), Gaps = 13/287 (4%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLI-VNPTSSNQVDPDFSE 87
           G   +S    ++  GE  S  ++A V+   G +   +D  E L+ V     + VD   +E
Sbjct: 112 GQCPDSINAALICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVD--IAE 169

Query: 88  SEKRLEKWFSQSPSN-TIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           S +R+    S+ P++  ++  GF A         L R+GSD+SAA++ A LRA    IWT
Sbjct: 170 STRRIAA--SRIPADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWT 227

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DVDGVY+ DPR+V +A +L+++SYQEA E+SYFGA VLHPRTI P+ ++ IP +I+N  N
Sbjct: 228 DVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGN 287

Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
              PG +I       +EDE     PVKG + ++N+A+ +V G GM G+ G A  +F A+ 
Sbjct: 288 PQAPGTLI---GASRDEDEL----PVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMS 340

Query: 267 DVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
               +V++I+Q+SSE+S+ F VP+ +      A++ +F   L  G L
Sbjct: 341 RARISVVLITQSSSEYSISFCVPQSDCVRAERAMQEEFYLELKEGLL 387

Escherichia coli (strain K12) (taxid: 83333)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|Q57991|AK_METJA Probable aspartokinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0571 PE=1 SV=1

 Score =  183 bits (464), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 109/278 (39%), Positives = 154/278 (55%), Gaps = 13/278 (4%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 115 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 174

Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 175 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290

Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 291 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 343

Query: 267 DVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304
           +   NVI+ISQ SSE ++   V E++V    +AL+ +F
Sbjct: 344 EEEVNVILISQGSSETNISLVVSEEDVDKALKALKREF 381

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 7

EC: .

EC: 2

EC: .

EC: 4

>sp|P57290|AKH_BUCAI Bifunctional aspartokinase/homoserine dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=thrA PE=3 SV=1

 Score =  176 bits (446), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 101/308 (32%), Positives = 166/308 (53%), Gaps = 29/308 (9%)

Query: 20  YNFLSNVDSG-----HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN 74
           +N L N+  G        ++    ++  GE+ S  ++ ++++    +        V I+N
Sbjct: 98  FNELKNIIQGILLLKQCPDNIRAIIISRGEILSVFIMKSILQSKNYN--------VTIIN 149

Query: 75  PTSS------NQVDP--DFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS 126
           P  +      N +D   D SES+K ++   + + SN I+  GFIA   D     L R+GS
Sbjct: 150 PVKNLVAIGDNYLDSTVDISESKKNIQNM-NINQSNIILMAGFIAGNKDKKLVVLGRNGS 208

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D+SAA++ A L A+   IWTDVDGV+++DPRKV  A +L+++SYQEA E+SYFGA VLHP
Sbjct: 209 DYSAAVLAACLDANCCEIWTDVDGVFTSDPRKVPNARLLKSISYQEAMELSYFGAKVLHP 268

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNV 246
           RTI P+ ++ IP +I+N  N+   G +IC     E +        +KG   +D +A+ N+
Sbjct: 269 RTIEPIAQFKIPCLIKNTNNVKSIGTLICEQNCSEKD-------FLKGVTHLDEIAMFNI 321

Query: 247 EGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE 306
            G  +  V    + IF  +      +++I+Q+SSE+ + F V E ++  +      +F+ 
Sbjct: 322 SGPHIKDVGSVISRIFTMMSRGNIKILLITQSSSENKINFCVYEHDIYKILYLFNKEFQL 381

Query: 307 ALNAGRLS 314
            L  G L+
Sbjct: 382 ELKDGLLN 389

Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

>sp|P44505|AKH_HAEIN Bifunctional aspartokinase/homoserine dehydrogenase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=thrA PE=3 SV=1

 Score =  171 bits (433), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 109/276 (39%), Positives = 151/276 (54%), Gaps = 26/276 (9%)

Query: 57  KNGIDCK-----------WMDTR--EVLIVNPTSSNQVDPDFSESEKRLEKWFSQ----- 98
           K  IDC+           W + R   V IV+P         + ES   +E+   +     
Sbjct: 119 KATIDCRGEKLSIAMMKAWFEARGYSVHIVDPVKQLLAKGGYLESSVEIEESTKRVDAAN 178

Query: 99  -SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
            +    ++  GF A         L R+GSD+SAA + A L A    IWTDVDGVY+ DPR
Sbjct: 179 IAKDKVVLMAGFTAGNEKGELVLLGRNGSDYSAACLAACLGASVCEIWTDVDGVYTCDPR 238

Query: 158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
            V +A +L TLSY+EA E+SYFGA V+HPRTI P++  +IP VI+N  N S PG +I   
Sbjct: 239 LVPDARLLPTLSYREAMELSYFGAKVIHPRTIGPLLPQNIPCVIKNTGNPSAPGSII--- 295

Query: 218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
             D N   + +   VKG   +DNLA+ NV G GM G+ G A+ +F A+   G +VI+I+Q
Sbjct: 296 --DGNVKSESLQ--VKGITNLDNLAMFNVSGPGMQGMVGMASRVFSAMSGAGISVILITQ 351

Query: 278 ASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           +SSE+S+ F VP K  +     LE++F   LN  +L
Sbjct: 352 SSSEYSISFCVPVKSAEVAKTVLETEFANELNEHQL 387

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
255569084	920	aspartate kinase, putative [Ricinus comm	0.872	0.313	0.881	1e-149
224145045	829	predicted protein [Populus trichocarpa]	0.866	0.344	0.875	1e-148
224136137	843	predicted protein [Populus trichocarpa]	0.866	0.339	0.868	1e-146
297740938	871	unnamed protein product [Vitis vinifera]	0.896	0.339	0.824	1e-146
147856217	841	hypothetical protein VITISV_034964 [Viti	0.896	0.351	0.824	1e-146
225460063	918	PREDICTED: bifunctional aspartokinase/ho	0.896	0.322	0.824	1e-146
351721667	916	aspartokinase-homoserine dehydrogenase [	0.872	0.314	0.850	1e-144
357518661	917	Bifunctional aspartokinase/homoserine de	0.896	0.322	0.820	1e-144
357518663	909	Bifunctional aspartokinase/homoserine de	0.872	0.316	0.850	1e-144
449481510	918	PREDICTED: bifunctional aspartokinase/ho	0.866	0.311	0.857	1e-144

>gi|255569084|ref|XP_002525511.1| aspartate kinase, putative [Ricinus communis] gi|223535190|gb|EEF36869.1| aspartate kinase, putative [Ricinus communis]

 Score =  535 bits (1377), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 254/288 (88%), Positives = 271/288 (94%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESFTDFVVGHGELWSAQML+ VVRK+G DCKWMDTREVLIVNPTSSNQVDPDF E
Sbjct: 198 AGHATESFTDFVVGHGELWSAQMLSYVVRKSGQDCKWMDTREVLIVNPTSSNQVDPDFVE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WF++ P  TI+ATGFIASTP NIPTTLKRDGSDFSAAIMGALLRA QVTIWTD
Sbjct: 258 SEKRLEEWFAKHPCKTIVATGFIASTPQNIPTTLKRDGSDFSAAIMGALLRARQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPI+IRNIFNL
Sbjct: 318 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIMIRNIFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           + PG MICR   DENED Q ++S VKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 378 ASPGTMICRTSTDENEDCQKLESFVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 437

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEV AVAEAL+S+FR+AL+AGRLSQ
Sbjct: 438 VGANVIMISQASSEHSVCFAVPEKEVNAVAEALQSRFRQALHAGRLSQ 485

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224145045|ref|XP_002325506.1| predicted protein [Populus trichocarpa] gi|222862381|gb|EEE99887.1| predicted protein [Populus trichocarpa]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 252/288 (87%), Positives = 272/288 (94%), Gaps = 2/288 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELW+AQML+ VVRKNG+DC+WMDTREVLIVNP+ SNQVDPDF E
Sbjct: 109 AGHATESFSDFVVGHGELWTAQMLSYVVRKNGLDCEWMDTREVLIVNPSGSNQVDPDFVE 168

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WFS+ PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIMGA++RA QVTIWTD
Sbjct: 169 SEKRLEEWFSRHPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIMGAMVRARQVTIWTD 228

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI+PVMRYDIPI+IRNIFNL
Sbjct: 229 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTILPVMRYDIPIMIRNIFNL 288

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICRP   ENED Q ++SPVKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 289 SAPGTMICRPA--ENEDGQKLESPVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 346

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEV AVAEAL+S+F EALNAGRLSQ
Sbjct: 347 VGANVIMISQASSEHSVCFAVPEKEVTAVAEALKSRFHEALNAGRLSQ 394

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136137|ref|XP_002327390.1| predicted protein [Populus trichocarpa] gi|222835760|gb|EEE74195.1| predicted protein [Populus trichocarpa]

 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 250/288 (86%), Positives = 271/288 (94%), Gaps = 2/288 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESF+DFVVGHGELWSAQML+ VVRKNG+DC+WMDTREVLIVNP+ SNQVDPDF+E
Sbjct: 123 AGHATESFSDFVVGHGELWSAQMLSYVVRKNGLDCEWMDTREVLIVNPSGSNQVDPDFAE 182

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SEKRLE+WFS+ PS TI+ATGFIAST  NIPTTLKRDGSDFSAAIMGAL+RA QVTIWTD
Sbjct: 183 SEKRLEEWFSRHPSKTIVATGFIASTQQNIPTTLKRDGSDFSAAIMGALVRARQVTIWTD 242

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI+PVMRYDIPI+IRN+FNL
Sbjct: 243 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIMPVMRYDIPILIRNVFNL 302

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICRP   ENED Q ++S VKGFATIDN+ALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 303 SAPGTMICRPA--ENEDGQKLESLVKGFATIDNVALVNVEGTGMAGVPGTASAIFGAVKD 360

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVI+ISQASSEHSVCFAVPEKEV AVAEAL+S+F EALNAGRLSQ
Sbjct: 361 VGANVIVISQASSEHSVCFAVPEKEVAAVAEALKSRFHEALNAGRLSQ 408

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297740938|emb|CBI31250.3| unnamed protein product [Vitis vinifera]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/302 (82%), Positives = 273/302 (90%), Gaps = 6/302 (1%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 141 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 194

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 195 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 254

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 255 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 314

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 315 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 374

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           VPGTA+AIF AVKDVGANVIMISQASSEHSVCFAVPEKEV+AVAEAL+S+FR+AL+AGRL
Sbjct: 375 VPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVEAVAEALQSRFRQALDAGRL 434

Query: 314 SQ 315
           SQ
Sbjct: 435 SQ 436

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147856217|emb|CAN82421.1| hypothetical protein VITISV_034964 [Vitis vinifera]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/302 (82%), Positives = 273/302 (90%), Gaps = 6/302 (1%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 111 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 164

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 165 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 224

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 225 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 284

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 285 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 344

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           VPGTA+AIF AVKDVGANVIMISQASSEHSVCFAVPEKEV+AVAEAL+S+FR+AL+AGRL
Sbjct: 345 VPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVEAVAEALQSRFRQALDAGRL 404

Query: 314 SQ 315
           SQ
Sbjct: 405 SQ 406

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460063|ref|XP_002271525.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like [Vitis vinifera]

 Score =  523 bits (1346), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 249/302 (82%), Positives = 273/302 (90%), Gaps = 6/302 (1%)

Query: 14  EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV 73
           E +R+ Y       +GHA+E F+D +VGHGELWSAQML++VVRK GIDCKWMDTR+VLIV
Sbjct: 188 EMLRAIYI------AGHASELFSDIIVGHGELWSAQMLSSVVRKKGIDCKWMDTRDVLIV 241

Query: 74  NPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIM 133
           NPTS+NQVDPDF ESE RLEKWF Q+PS TI+ATGFIASTP NIPTTLKRDGSDFSAAIM
Sbjct: 242 NPTSANQVDPDFVESEMRLEKWFFQNPSKTIVATGFIASTPQNIPTTLKRDGSDFSAAIM 301

Query: 134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM 193
           GAL RA QVTIWTDVDGVYSADPRKV+EAVIL  LSYQEAWEMSYFGANVLHPRTIIPVM
Sbjct: 302 GALFRARQVTIWTDVDGVYSADPRKVAEAVILNQLSYQEAWEMSYFGANVLHPRTIIPVM 361

Query: 194 RYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAG 253
           +Y IPIVIRNIFNLS PG MICRP VDENE  Q ++SPVKGFATIDN+AL+NVEGTGMAG
Sbjct: 362 QYGIPIVIRNIFNLSAPGTMICRPSVDENEGNQRLESPVKGFATIDNVALINVEGTGMAG 421

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           VPGTA+AIF AVKDVGANVIMISQASSEHSVCFAVPEKEV+AVAEAL+S+FR+AL+AGRL
Sbjct: 422 VPGTASAIFSAVKDVGANVIMISQASSEHSVCFAVPEKEVEAVAEALQSRFRQALDAGRL 481

Query: 314 SQ 315
           SQ
Sbjct: 482 SQ 483

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721667|ref|NP_001237473.1| aspartokinase-homoserine dehydrogenase [Glycine max] gi|2970447|gb|AAC05981.1| aspartokinase-homoserine dehydrogenase [Glycine max]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/288 (85%), Positives = 266/288 (92%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHATESFTDFVVGHGELWSAQML+ V+RKNG DCKWMDTR+VLIVNPT SNQVDPD+ E
Sbjct: 194 AGHATESFTDFVVGHGELWSAQMLSLVIRKNGTDCKWMDTRDVLIVNPTGSNQVDPDYLE 253

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLEKW+S +P   IIATGFIASTP NIPTTLKRDGSDFSAAIMGAL +A QVTIWTD
Sbjct: 254 SEQRLEKWYSLNPCKVIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALFKARQVTIWTD 313

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIFNL
Sbjct: 314 VDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPIMIRNIFNL 373

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG  IC P V+++ED Q + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIFGAVKD
Sbjct: 374 SAPGTKICHPSVNDHEDSQNLQNFVKGFATIDNLALVNVEGTGMAGVPGTASAIFGAVKD 433

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL+ GRLSQ
Sbjct: 434 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLSQ 481

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518661|ref|XP_003629619.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|355523641|gb|AET04095.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/301 (82%), Positives = 269/301 (89%), Gaps = 5/301 (1%)

Query: 15  FIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN 74
            +R+ Y     +  GH TESFTDFVVGHGELWSAQML+ V+RKNGIDCKWMDTREVLIVN
Sbjct: 187 MLRAIY-----IGPGHVTESFTDFVVGHGELWSAQMLSLVIRKNGIDCKWMDTREVLIVN 241

Query: 75  PTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMG 134
           PTSSNQVDPD+ ESE+RLEKW+S +P   IIATGFIASTP+NIPTTLKRDGSDFSAAIMG
Sbjct: 242 PTSSNQVDPDYLESERRLEKWYSLNPCKVIIATGFIASTPENIPTTLKRDGSDFSAAIMG 301

Query: 135 ALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR 194
           +L RA QVTIWTDVDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMR
Sbjct: 302 SLFRARQVTIWTDVDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMR 361

Query: 195 YDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGV 254
           Y IPI+IRNIFNLS PG  IC P V + ED+  + + VKGFATIDNLALVNVEGTGMAGV
Sbjct: 362 YGIPILIRNIFNLSAPGTKICHPVVSDYEDKSNLQNYVKGFATIDNLALVNVEGTGMAGV 421

Query: 255 PGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLS 314
           PGTA+AIF AVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL+ GRLS
Sbjct: 422 PGTASAIFAAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLS 481

Query: 315 Q 315
           Q
Sbjct: 482 Q 482

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518663|ref|XP_003629620.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula] gi|355523642|gb|AET04096.1| Bifunctional aspartokinase/homoserine dehydrogenase [Medicago truncatula]

 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 245/288 (85%), Positives = 265/288 (92%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GH TESFTDFVVGHGELWSAQML+ V+RKNGIDCKWMDTREVLIVNPTSSNQVDPD+ E
Sbjct: 187 AGHVTESFTDFVVGHGELWSAQMLSLVIRKNGIDCKWMDTREVLIVNPTSSNQVDPDYLE 246

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLEKW+S +P   IIATGFIASTP+NIPTTLKRDGSDFSAAIMG+L RA QVTIWTD
Sbjct: 247 SERRLEKWYSLNPCKVIIATGFIASTPENIPTTLKRDGSDFSAAIMGSLFRARQVTIWTD 306

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKVSEAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY IPI+IRNIFNL
Sbjct: 307 VDGVYSADPRKVSEAVILKTLSYQEAWEMSYFGANVLHPRTIIPVMRYGIPILIRNIFNL 366

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG  IC P V + ED+  + + VKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVKD
Sbjct: 367 SAPGTKICHPVVSDYEDKSNLQNYVKGFATIDNLALVNVEGTGMAGVPGTASAIFAAVKD 426

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANVIMISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL+ GRLSQ
Sbjct: 427 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALQSRFRQALDNGRLSQ 474

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449481510|ref|XP_004156204.1| PREDICTED: bifunctional aspartokinase/homoserine dehydrogenase, chloroplastic-like [Cucumis sativus]

 Score =  515 bits (1327), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 247/288 (85%), Positives = 268/288 (93%), Gaps = 2/288 (0%)

Query: 28  SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
           +GHA ESFTDFVVGHGELWSA ML+AV+RK G+DCKWMDTREVLIVNPTSSNQVDPDF E
Sbjct: 198 AGHAMESFTDFVVGHGELWSASMLSAVIRKRGLDCKWMDTREVLIVNPTSSNQVDPDFLE 257

Query: 88  SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
           SE+RLE+W+S++ S  IIATGFIAST +NIPTTLKRDGSDFSAAIMGALL + QVTIWTD
Sbjct: 258 SERRLEQWYSKNSSKIIIATGFIASTHENIPTTLKRDGSDFSAAIMGALLTSRQVTIWTD 317

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           VDGVYSADPRKV EAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPI+IRNIFNL
Sbjct: 318 VDGVYSADPRKVKEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIIIRNIFNL 377

Query: 208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
           S PG MICR PVDE E E ++ S VKGFATIDN+ALVNVEGTGMAGVPGTANAIFGAVKD
Sbjct: 378 SAPGTMICRQPVDE-ESESLV-SFVKGFATIDNVALVNVEGTGMAGVPGTANAIFGAVKD 435

Query: 268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           VGANV+MISQASSEHSVCFAVPEKEVKAVAEAL+S+FR+AL AGRLSQ
Sbjct: 436 VGANVVMISQASSEHSVCFAVPEKEVKAVAEALKSRFRQALEAGRLSQ 483

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2133995	916	AK-HSDH II "aspartate kinase-h	0.866	0.312	0.795	6.7e-120
TAIR|locus:2029564	911	AK-HSDH I "aspartate kinase-ho	0.866	0.313	0.795	2.9e-119
UNIPROTKB|P00561	820	thrA "ThrA" [Escherichia coli	0.818	0.329	0.370	7.4e-42
UNIPROTKB|Q9KPK3	825	VC_2364 "Aspartokinase I/homos	0.721	0.288	0.405	2.1e-41
TIGR_CMR|VC_2364	825	VC_2364 "aspartokinase I/homos	0.721	0.288	0.405	2.1e-41
TIGR_CMR|CPS_4291	825	CPS_4291 "aspartokinase/homose	0.721	0.288	0.395	4.2e-40
TIGR_CMR|SO_3415	822	SO_3415 "aspartokinase I/homos	0.724	0.290	0.379	7.3e-37
UNIPROTKB|Q9KUW8	479	VC_0391 "Aspartokinase" [Vibri	0.524	0.361	0.365	2.6e-31
TIGR_CMR|VC_0391	479	VC_0391 "aspartokinase III, ly	0.524	0.361	0.365	2.6e-31
UNIPROTKB|P08660	449	lysC "LysC" [Escherichia coli	0.715	0.525	0.32	1.3e-29

TAIR|locus:2133995 AK-HSDH II "aspartate kinase-homoserine dehydrogenase ii" [Arabidopsis thaliana (taxid:3702)]

 Score = 1180 (420.4 bits), Expect = 6.7e-120, P = 6.7e-120
 Identities = 229/288 (79%), Positives = 250/288 (86%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             +GHA+ESF+DFV GHGELWSAQML+ VVRK G++CKWMDTR+VLIVNPTSSNQVDPDF E
Sbjct:   196 AGHASESFSDFVAGHGELWSAQMLSYVVRKTGLECKWMDTRDVLIVNPTSSNQVDPDFGE 255

Query:    88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
             SEKRL+KWFS +PS  IIATGFIASTP NIPTTLKRDGSDFSAAIMGALLRA QVTIWTD
Sbjct:   256 SEKRLDKWFSLNPSKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMGALLRARQVTIWTD 315

Query:   148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
             VDGVYSADPRKV+EAVIL+TLSYQEAWEMSYFGANVLHPRTIIPVMRY+IPIVIRNIFNL
Sbjct:   316 VDGVYSADPRKVNEAVILQTLSYQEAWEMSYFGANVLHPRTIIPVMRYNIPIVIRNIFNL 375

Query:   208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
             S PG +IC+PP D+ + +  + +PVKGFATIDNLAL+NVEGTGMAGVPGTA+ IFG VKD
Sbjct:   376 SAPGTIICQPPEDDYDLK--LTTPVKGFATIDNLALINVEGTGMAGVPGTASDIFGCVKD 433

Query:   268 VGANVIMISQASSEHSVCFXXXXXXXXXXXXXXXXXFREALNAGRLSQ 315
             VGANVIMISQASSEHSVCF                 F EAL AGRLSQ
Sbjct:   434 VGANVIMISQASSEHSVCFAVPEKEVNAVSEALRSRFSEALQAGRLSQ 481

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0006164 "purine nucleotide biosynthetic process" evidence=RCA

TAIR|locus:2029564 AK-HSDH I "aspartate kinase-homoserine dehydrogenase i" [Arabidopsis thaliana (taxid:3702)]

 Score = 1174 (418.3 bits), Expect = 2.9e-119, P = 2.9e-119
 Identities = 229/288 (79%), Positives = 250/288 (86%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             +GHATESF+DFVVGHGELWSAQMLAAVVRK+G+DC WMD R+VL+V PTSSNQVDPDF E
Sbjct:   191 AGHATESFSDFVVGHGELWSAQMLAAVVRKSGLDCTWMDARDVLVVIPTSSNQVDPDFVE 250

Query:    88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
             SEKRLEKWF+Q+ +  IIATGFIASTP NIPTTLKRDGSDFSAAIM AL R+HQ+TIWTD
Sbjct:   251 SEKRLEKWFTQNSAKIIIATGFIASTPQNIPTTLKRDGSDFSAAIMSALFRSHQLTIWTD 310

Query:   148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
             VDGVYSADPRKVSEAV+L+TLSYQEAWEMSYFGANVLHPRTIIPVM+YDIPIVIRNIFNL
Sbjct:   311 VDGVYSADPRKVSEAVVLKTLSYQEAWEMSYFGANVLHPRTIIPVMKYDIPIVIRNIFNL 370

Query:   208 SVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
             S PG MICR  +D+ ED   +D+PVKGFATIDNLALVNVEGTGMAGVPGTA+AIF AVK+
Sbjct:   371 SAPGTMICRQ-IDD-EDGFKLDAPVKGFATIDNLALVNVEGTGMAGVPGTASAIFSAVKE 428

Query:   268 VGANVIMISQASSEHSVCFXXXXXXXXXXXXXXXXXFREALNAGRLSQ 315
             VGANVIMISQASSEHSVCF                 FR+AL  GRLSQ
Sbjct:   429 VGANVIMISQASSEHSVCFAVPEKEVKAVSEALNSRFRQALAGGRLSQ 476

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0009067 "aspartate family amino acid biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0050661 "NADP binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

UNIPROTKB|P00561 thrA "ThrA" [Escherichia coli K-12 (taxid:83333)]

 Score = 451 (163.8 bits), Expect = 7.4e-42, P = 7.4e-42
 Identities = 106/286 (37%), Positives = 168/286 (58%)

Query:     3 QVRNYVSELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDC 62
             Q++ +V +  +  I+   + +S +  G   +S    ++  GE  S  ++A V+   G + 
Sbjct:    89 QLKTFVDQ-EFAQIKHVLHGISLL--GQCPDSINAALICRGEKMSIAIMAGVLEARGHNV 145

Query:    63 KWMDTREVLI-VNPTSSNQVDPDFSESEKRLEKWFSQSPSN-TIIATGFIASTPDNIPTT 120
               +D  E L+ V     + VD   +ES +R+    S+ P++  ++  GF A         
Sbjct:   146 TVIDPVEKLLAVGHYLESTVD--IAESTRRIAA--SRIPADHMVLMAGFTAGNEKGELVV 201

Query:   121 LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG 180
             L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR+V +A +L+++SYQEA E+SYFG
Sbjct:   202 LGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQVPDARLLKSMSYQEAMELSYFG 261

Query:   181 ANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDN 240
             A VLHPRTI P+ ++ IP +I+N  N   PG +I       +EDE     PVKG + ++N
Sbjct:   262 AKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLI---GASRDEDEL----PVKGISNLNN 314

Query:   241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
             +A+ +V G GM G+ G A  +F A+     +V++I+Q+SSE+S+ F
Sbjct:   315 MAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360

GO:0050661 "NADP binding" evidence=IEA

GO:0016597 "amino acid binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009088 "threonine biosynthetic process" evidence=IEA

GO:0004412 "homoserine dehydrogenase activity" evidence=IEA;IDA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;IDA

GO:0009090 "homoserine biosynthetic process" evidence=IDA

UNIPROTKB|Q9KPK3 VC_2364 "Aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 447 (162.4 bits), Expect = 2.1e-41, P = 2.1e-41
 Identities = 101/249 (40%), Positives = 146/249 (58%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-QVDPDFSESEKRLEKWFS 97
             ++  GE  S Q++ AV+   G+    +D  + L+         VD + S    R +    
Sbjct:   128 IISKGERVSIQLMKAVMEAKGLPANLVDPVKYLLAKGDHLEAMVDVEISTQRFR-QAPLP 186

Query:    98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
             Q   N  I  GF A         L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR
Sbjct:   187 QQHVN--IMPGFTAGNAQGELVCLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYNCDPR 244

Query:   158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
              V +A +L++LSYQEA E+SYFGA+VLHP+TI P+ ++ IP +I+N FN    G +I + 
Sbjct:   245 LVDDARLLKSLSYQEAMELSYFGASVLHPKTIAPIAQFQIPCLIKNSFNPQGAGTLIGQ- 303

Query:   218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
               D  ED+  I    KG  T+ NL +VNV G GM G+ G A+ +FGA+     ++++I+Q
Sbjct:   304 --DTGEDKLAI----KGITTLSNLTMVNVSGPGMKGMVGMASRVFGAMSAADVSIVLITQ 357

Query:   278 ASSEHSVCF 286
             +SSE+S+ F
Sbjct:   358 SSSEYSISF 366

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|VC_2364 VC_2364 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 447 (162.4 bits), Expect = 2.1e-41, P = 2.1e-41
 Identities = 101/249 (40%), Positives = 146/249 (58%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-QVDPDFSESEKRLEKWFS 97
             ++  GE  S Q++ AV+   G+    +D  + L+         VD + S    R +    
Sbjct:   128 IISKGERVSIQLMKAVMEAKGLPANLVDPVKYLLAKGDHLEAMVDVEISTQRFR-QAPLP 186

Query:    98 QSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR 157
             Q   N  I  GF A         L R+GSD+SAA++ A LRA    IWTDVDGVY+ DPR
Sbjct:   187 QQHVN--IMPGFTAGNAQGELVCLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYNCDPR 244

Query:   158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP 217
              V +A +L++LSYQEA E+SYFGA+VLHP+TI P+ ++ IP +I+N FN    G +I + 
Sbjct:   245 LVDDARLLKSLSYQEAMELSYFGASVLHPKTIAPIAQFQIPCLIKNSFNPQGAGTLIGQ- 303

Query:   218 PVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
               D  ED+  I    KG  T+ NL +VNV G GM G+ G A+ +FGA+     ++++I+Q
Sbjct:   304 --DTGEDKLAI----KGITTLSNLTMVNVSGPGMKGMVGMASRVFGAMSAADVSIVLITQ 357

Query:   278 ASSEHSVCF 286
             +SSE+S+ F
Sbjct:   358 SSSEYSISF 366

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|CPS_4291 CPS_4291 "aspartokinase/homoserine dehydrogenase, threonine-sensitive" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 435 (158.2 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 100/253 (39%), Positives = 149/253 (58%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
             ++  GE  S  +L AV++   +    +   + L  N +S N V  D   S+++ E  +++
Sbjct:   122 IISTGERLSVAILDAVLQAYSVQVSLLAPEKFLYTNKSSLNAV-ADLVLSKEKFEHEYTE 180

Query:    99 SPSNTIIATGFIASTPDN---IP--TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
               +   +  GFI    DN    P  TTL R+GSD+SAA++     A    IWTDVDGVY+
Sbjct:   181 L-NQVSLMPGFIGVNADNNDGTPEVTTLGRNGSDYSAAVLAVCAVAECCEIWTDVDGVYN 239

Query:   154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
             ADPR + EA +L  LSYQEA E+SYFGA+VLHP+TI P+ +Y IP +I+N  N S PG +
Sbjct:   240 ADPRYIKEAKLLDYLSYQEAMELSYFGASVLHPKTIGPIAQYHIPCLIKNTSNPSAPGTL 299

Query:   214 ICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVI 273
             I       NE++Q     VK  + +D+L +VNV G GM G+ G A+ +F  +     +++
Sbjct:   300 I------SNENDQ--QKRVKAISNLDDLTMVNVSGPGMKGMVGMASRVFATMSRENISLV 351

Query:   274 MISQASSEHSVCF 286
             +ISQ+SSE+ + F
Sbjct:   352 LISQSSSEYCISF 364

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

TIGR_CMR|SO_3415 SO_3415 "aspartokinase I/homoserine dehydrogenase, threonine-sensitive" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 405 (147.6 bits), Expect = 7.3e-37, P = 7.3e-37
 Identities = 94/248 (37%), Positives = 136/248 (54%)

Query:    39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
             +V  GE  SA ++  V+   GI    +D R++ +        V  D + S+ R +     
Sbjct:   123 IVVAGERLSAALMEQVMLAKGITSAQLDPRKLFLGRGRPLESV-VDIAVSKPRFKNLLLD 181

Query:    99 SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
                   +  GF A+  D    TL R+GSD+SAA++ A L A    IWTDVDGVY+ DPR 
Sbjct:   182 E-KRVWVMPGFTAADEDGKVVTLGRNGSDYSAAVLAACLDASSCEIWTDVDGVYNTDPRV 240

Query:   159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP 218
             V++A +L  LSYQEA E+SYFGA VLHP+TI P+ ++ IP  I+N FN   PG +     
Sbjct:   241 VADAKLLSQLSYQEAMELSYFGAKVLHPKTIAPIAQFHIPCYIKNSFNPDAPGTL----- 295

Query:   219 VDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278
             V    D   +   VK  + +DN  + +V G GM G+ G A+    A+   G +V +I+Q+
Sbjct:   296 VSNLADASGLQ--VKAISNLDNQTMFDVSGPGMKGMVGMASRTLAAISRSGVSVSLITQS 353

Query:   279 SSEHSVCF 286
             S E+S+ F
Sbjct:   354 SCEYSISF 361

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0004412 "homoserine dehydrogenase activity" evidence=ISS

GO:0009086 "methionine biosynthetic process" evidence=ISS

GO:0009088 "threonine biosynthetic process" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|Q9KUW8 VC_0391 "Aspartokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 299 (110.3 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
 Identities = 64/175 (36%), Positives = 99/175 (56%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             S  +++  TD +V  GEL S  +L  ++R+ G+D    D REVL  +     + +P   E
Sbjct:   132 SFQSSKKLTDHLVACGELISTYILTQLMRERGVDAVRFDIREVLRTDD-HYGRAEPQLKE 190

Query:    88 -SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
              ++   EK         ++  GFI S      TTL R GSD+SAA++   ++A  + IWT
Sbjct:   191 IAQLAKEKLVPLCEQYVVVTQGFIGSDAQGNTTTLGRGGSDYSAALIAEAVQASGLEIWT 250

Query:   147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
             DV G+YS DPR   +A  +  +S+ EA EM+ FGA +LHP T++P +R+ IP+ +
Sbjct:   251 DVPGIYSTDPRIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFV 305

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

TIGR_CMR|VC_0391 VC_0391 "aspartokinase III, lysine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 299 (110.3 bits), Expect = 2.6e-31, Sum P(2) = 2.6e-31
 Identities = 64/175 (36%), Positives = 99/175 (56%)

Query:    28 SGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE 87
             S  +++  TD +V  GEL S  +L  ++R+ G+D    D REVL  +     + +P   E
Sbjct:   132 SFQSSKKLTDHLVACGELISTYILTQLMRERGVDAVRFDIREVLRTDD-HYGRAEPQLKE 190

Query:    88 -SEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
              ++   EK         ++  GFI S      TTL R GSD+SAA++   ++A  + IWT
Sbjct:   191 IAQLAKEKLVPLCEQYVVVTQGFIGSDAQGNTTTLGRGGSDYSAALIAEAVQASGLEIWT 250

Query:   147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
             DV G+YS DPR   +A  +  +S+ EA EM+ FGA +LHP T++P +R+ IP+ +
Sbjct:   251 DVPGIYSTDPRIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFV 305

GO:0004072 "aspartate kinase activity" evidence=ISS

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=ISS

UNIPROTKB|P08660 lysC "LysC" [Escherichia coli K-12 (taxid:83333)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 80/250 (32%), Positives = 130/250 (52%)

Query:    34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE-SEKRL 92
             + TD +V HGEL S  +   ++R+  +  +W D R+V+  N     + +PD +  +E   
Sbjct:   109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFG-RAEPDIAALAELAA 167

Query:    93 EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
              +   +     +I  GFI S      TTL R GSD++AA++   L A +V IWTDV G+Y
Sbjct:   168 LQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227

Query:   153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
             + DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G 
Sbjct:   228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287

Query:   213 MICRPPVDENEDEQIIDSPV-KGFATIDNLALVNVEGTGMAGVPGTANAIFG--AVKDVG 269
             ++C      N+ E   + P+ +  A   N  L+ +    M    G    +FG  A  ++ 
Sbjct:   288 LVC------NKTE---NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338

Query:   270 ANVIMISQAS 279
              ++I  S+ S
Sbjct:   339 VDLITTSEVS 348

GO:0016597 "amino acid binding" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004072 "aspartate kinase activity" evidence=IEA;IDA

GO:0009089 "lysine biosynthetic process via diaminopimelate" evidence=IEA;IDA

GO:0009090 "homoserine biosynthetic process" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SA18	AKH1_ARATH	1, ., 1, ., 1, ., 3	0.8402	0.8666	0.3139	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.2	LOW CONFIDENCE prediction!
4th Layer	2.7.2.4	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
PRK09436	819	PRK09436, thrA, bifunctional aspartokinase I/homos	1e-105
cd04257	294	cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina	1e-97
COG0527	447	COG0527, LysC, Aspartokinases [Amino acid transpor	2e-92
cd04243	293	cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino	9e-92
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	2e-79
cd04234	227	cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa	1e-76
TIGR00657	441	TIGR00657, asp_kinases, aspartate kinase	3e-75
TIGR00656	401	TIGR00656, asp_kin_monofn, aspartate kinase, monof	2e-64
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	6e-52
cd04244	298	cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino	2e-50
cd04258	292	cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami	3e-50
PRK08961	861	PRK08961, PRK08961, bifunctional aspartate kinase/	1e-45
PRK09466	810	PRK09466, metL, bifunctional aspartate kinase II/h	3e-45
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	1e-42
cd04259	295	cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki	4e-39
cd04245	288	cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami	6e-37
cd04246	239	cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino	1e-34
PRK09034	454	PRK09034, PRK09034, aspartate kinase; Reviewed	2e-34
cd02115	248	cd02115, AAK, Amino Acid Kinases (AAK) superfamily	1e-32
PLN02551	521	PLN02551, PLN02551, aspartokinase	2e-32
PRK08210	403	PRK08210, PRK08210, aspartate kinase I; Reviewed	4e-32
cd04260	244	cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A	3e-31
cd04261	239	cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino	2e-30
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	1e-29
pfam00696	230	pfam00696, AA_kinase, Amino acid kinase family	8e-29
cd04921	80	cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of	2e-28
PRK05925	440	PRK05925, PRK05925, aspartate kinase; Provisional	1e-27
PRK08373	341	PRK08373, PRK08373, aspartate kinase; Validated	2e-27
cd04247	306	cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kina	7e-27
TIGR02078	327	TIGR02078, AspKin_pair, Pyrococcus aspartate kinas	2e-20
cd04892	65	cd04892, ACT_AK-like_2, ACT domains C-terminal to	3e-19
PRK08841	392	PRK08841, PRK08841, aspartate kinase; Validated	3e-18
PRK06291	465	PRK06291, PRK06291, aspartate kinase; Provisional	3e-16
cd04868	60	cd04868, ACT_AK-like, ACT domains C-terminal to th	2e-15
cd04924	66	cd04924, ACT_AK-Arch_2, ACT domains of a monofunct	1e-13
PRK09084	448	PRK09084, PRK09084, aspartate kinase III; Validate	2e-12
cd04239	229	cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase	2e-10
PRK09034	454	PRK09034, PRK09034, aspartate kinase; Reviewed	4e-09
cd04917	64	cd04917, ACT_AKiii-LysC-EC_2, ACT domains located	1e-08
cd04916	66	cd04916, ACT_AKiii-YclM-BS_2, ACT domains located	1e-08
PRK00358	231	PRK00358, pyrH, uridylate kinase; Provisional	2e-08
COG0528	238	COG0528, PyrH, Uridylate kinase [Nucleotide transp	2e-08
cd04922	66	cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the b	3e-08
TIGR02075	232	TIGR02075, pyrH_bact, uridylate kinase	8e-08
cd04254	231	cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t	2e-07
pfam01842	66	pfam01842, ACT, ACT domain	7e-06
cd04248	304	cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Aci	7e-06
PRK14558	231	PRK14558, pyrH, uridylate kinase; Provisional	8e-06
cd04923	63	cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of t	1e-05
cd04936	63	cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of t	1e-05
TIGR02076	221	TIGR02076, pyrH_arch, uridylate kinase, putative	1e-05
PRK06635	404	PRK06635, PRK06635, aspartate kinase; Reviewed	2e-05
cd04253	221	cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP k	2e-05
PRK09181	475	PRK09181, PRK09181, aspartate kinase; Validated	9e-05
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	2e-04
cd04913	75	cd04913, ACT_AKii-LysC-BS-like_1, ACT domains of t	2e-04
pfam13840	65	pfam13840, ACT_7, Family description	3e-04
cd04242	251	cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-k	6e-04
PRK07431	587	PRK07431, PRK07431, aspartate kinase; Provisional	0.001
PRK05429	372	PRK05429, PRK05429, gamma-glutamyl kinase; Provisi	0.001
COG0263	369	COG0263, ProB, Glutamate 5-kinase [Amino acid tran	0.001
TIGR01027	363	TIGR01027, proB, glutamate 5-kinase	0.001
cd04255	262	cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD i	0.003
cd04891	61	cd04891, ACT_AK-LysC-DapG-like_1, ACT domains of t	0.003

>gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

 Score =  324 bits (833), Expect = e-105
 Identities = 113/277 (40%), Positives = 165/277 (59%), Gaps = 9/277 (3%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
             ++  GE  S  ++AAV+   G D   +D RE+L+ +     +   D +ES +R+   F
Sbjct: 120 AAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLAD-GHYLESTVDIAESTRRIAASF 178

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
             +  + I+  GF A        TL R+GSD+SAAI+ A L A    IWTDVDGVY+ADP
Sbjct: 179 IPAD-HVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADP 237

Query: 157 RKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR 216
           R V +A +L++LSYQEA E+SYFGA VLHPRTI P+ ++ IP +I+N FN   PG +I  
Sbjct: 238 RVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGA 297

Query: 217 PPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMIS 276
              ++         PVKG + ++N+A+ NV G GM G+ G A+ +F A+   G +V++I+
Sbjct: 298 ESDED-------SLPVKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLIT 350

Query: 277 QASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRL 313
           Q+SSE+S+ F VP+ +      ALE +F   L  G L
Sbjct: 351 QSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLL 387

Length = 819

>gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

 Score =  290 bits (744), Expect = 1e-97
 Identities = 97/187 (51%), Positives = 126/187 (67%), Gaps = 2/187 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G   +S    V+  GE  SA++L+A++ + G+D  W+D RE LIV          D   S
Sbjct: 110 GELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARE-LIVTDGGYLNAVVDIELS 168

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           ++R++ WFS +    I+ TGFIAS P    TTL R+GSD+SAAI+ ALL A QV IWTDV
Sbjct: 169 KERIKAWFSSNGK-VIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDV 227

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVYSADPRKV +A +L +LSYQEA E+SYFGA VLHP+TI PV + +IPI+I+N FN  
Sbjct: 228 DGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPE 287

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 288 APGTLIS 294

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Length = 294

>gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism]

 Score =  281 bits (722), Expect = 2e-92
 Identities = 108/278 (38%), Positives = 150/278 (53%), Gaps = 9/278 (3%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR 91
           +    D ++  GE  SA +LAA +   G+D + +D R+  I   ++         +SE+R
Sbjct: 107 SPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERR 166

Query: 92  LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
           L +          +  GF     D   TTL R GSD+SAA + A L A +V IWTDVDGV
Sbjct: 167 LLR--LLEEGKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGV 224

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
           Y+ADPR V +A +L  +SY+EA E++Y GA VLHPR + P MR  IP+ I+N FN   PG
Sbjct: 225 YTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPG 284

Query: 212 IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271
            +I      +          VKG A  DN+AL+ V G GM G+ G A  +FG + + G N
Sbjct: 285 TLITAETESDEP-------VVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEAGIN 337

Query: 272 VIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN 309
           V +I+Q+ SE S+ F VPE +      AL  +  E L 
Sbjct: 338 VDLITQSISEVSISFTVPESDAPRALRALLEEKLELLA 375

Length = 447

>gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

 Score =  275 bits (705), Expect = 9e-92
 Identities = 83/187 (44%), Positives = 120/187 (64%), Gaps = 2/187 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  ++     V+  GEL S+++++A +++ G+   W+D RE+ ++          D   S
Sbjct: 109 GELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDGFLNAVVDLKLS 167

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           ++RL +  ++     ++  GFIAS  D   TTL R GSD+SAA++ ALL A +V IWTDV
Sbjct: 168 KERLAQLLAEH-GKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDV 226

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPRKV +A +L+ LSY EA E++YFGA VLHPRTI P +R +IPI I+N FN  
Sbjct: 227 DGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPE 286

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 287 APGTLIS 293

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score =  249 bits (637), Expect = 2e-79
 Identities = 117/278 (42%), Positives = 160/278 (57%), Gaps = 18/278 (6%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN----QVDPDFSESEKRL 92
           D+++  GE  SA +L+  +R  GI    +   E  I+  T SN    +  P   ++ +R+
Sbjct: 123 DYILSFGERLSAPILSGALRDLGIKSVALTGGEAGII--TDSNFGNARPLP---KTYERV 177

Query: 93  EKWFSQSPSNTII--ATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG 150
           ++         +I   TGFI  T + I TTL R GSD+SAAI+GA L A ++ IWTDVDG
Sbjct: 178 KERLEPLLKEGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDG 237

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVP 210
           V + DPR V EA ++  +SY EA E+SYFGA VLHPRTI P M   IP+ ++N FN   P
Sbjct: 238 VMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFP 297

Query: 211 GIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA 270
           G +I         D +     VK    I N+AL+N+ G GM GVPGTA  IF A+ + G 
Sbjct: 298 GTLITS-------DSESSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGV 350

Query: 271 NVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL 308
           NVIMISQ SSE ++   V E +++   +AL  +F E L
Sbjct: 351 NVIMISQGSSESNISLVVDEADLEKALKALRREFGEGL 388

Length = 465

>gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

 Score =  234 bits (599), Expect = 1e-76
 Identities = 74/177 (41%), Positives = 106/177 (59%), Gaps = 2/177 (1%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
           ++  GE  SA++LAA +R  GI  + +D R+  I     ++        S +RL++  ++
Sbjct: 53  LLSFGERLSARLLAAALRDRGIKARSLDARQAGITT-DDNHGAARIIEISYERLKELLAE 111

Query: 99  SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
                 + TGFI    D   TTL R GSD+SAA + A L A +V IWTDVDG+Y+ADPR 
Sbjct: 112 I-GKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
           V EA ++  +SY EA E++YFGA VLHPR + P  + +IPI ++N FN   PG +I 
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT 227

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227

>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase

 Score =  237 bits (607), Expect = 3e-75
 Identities = 94/268 (35%), Positives = 142/268 (52%), Gaps = 11/268 (4%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWM-DTREVLIVNPTSSNQVDPDFSESEKRLEK 94
            D ++  GE  SA +L+A + + G+    +      ++ +               +RLE 
Sbjct: 105 MDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARV-IIEILTERLEP 163

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +      +  GF  +T     TTL R GSD++AA++ A L+A +  I+TDVDG+Y+ 
Sbjct: 164 LLEEGII--PVVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTT 221

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V +A  +  +SY+E  E++ FGA VLHPRT+ P MR  IPIV+++ FN   PG +I
Sbjct: 222 DPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLI 281

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
                 E E     +  VKG +   N A V V G GM G PG    +FGA+ + G NV +
Sbjct: 282 V-ASTKEME-----EPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGINVDL 334

Query: 275 ISQASSEHSVCFAVPEKEVKAVAEALES 302
           I+Q+SSE S+ F V +++       L+S
Sbjct: 335 ITQSSSETSISFTVDKEDADQAKTLLKS 362

Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441

>gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class

 Score =  208 bits (531), Expect = 2e-64
 Identities = 100/282 (35%), Positives = 142/282 (50%), Gaps = 15/282 (5%)

Query: 25  NVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVD-- 82
                  T    D +V HGE  S+ + +  +R  G+   W+D  E  I+  T  N  +  
Sbjct: 55  KAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGII--TDDNFGNAK 112

Query: 83  PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQV 142
            D   +E+RL     +     ++  GF  +T     TTL R GSD++AA++ A L+A +V
Sbjct: 113 IDIIATEERLLPLLEEG--IIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRV 170

Query: 143 TIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
            I+TDV GVY+ DPR V  A  +  +SY+EA E++ FGA VLHPRT+ P MR  +PI +R
Sbjct: 171 DIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVR 230

Query: 203 NIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIF 262
           + F+    G +I      EN         VKG A   N+  V V G GM G  G    IF
Sbjct: 231 SSFDPE-EGTLITNS--MENPP------LVKGIALRKNVTRVTVHGLGMLGKRGFLARIF 281

Query: 263 GAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF 304
           GA+ +   NV +ISQ  SE S+   V E +      AL+ + 
Sbjct: 282 GALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQS 323

This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score =  177 bits (451), Expect = 6e-52
 Identities = 80/256 (31%), Positives = 129/256 (50%), Gaps = 16/256 (6%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN--QVDPDFSESE 89
           + + TD +V HGEL S  +   ++R+ G+  +W D R+V+    T     + +PD +   
Sbjct: 105 SPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMR---TDDRFGRAEPDVAALA 161

Query: 90  KRLEKWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           +  ++      +  ++ T GFI S      TTL R GSD+SAA++   L A +V IWTDV
Sbjct: 162 ELAQEQLLPLLAEGVVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDV 221

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
            G+Y+ DPR V  A  +  +S++EA EM+ FGA VLHP T++P +R +IP+ + +  +  
Sbjct: 222 PGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPE 281

Query: 209 VPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDV 268
             G  IC    +            +  A   N  L+ +    M    G    +FG +   
Sbjct: 282 AGGTWICNDTENP--------PLFRAIALRRNQTLLTLHSLNMLHARGFLAEVFGILARH 333

Query: 269 GANVIMISQASSEHSV 284
             +V +I+  +SE SV
Sbjct: 334 KISVDLIT--TSEVSV 347

Length = 448

>gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

 Score =  169 bits (430), Expect = 2e-50
 Identities = 77/181 (42%), Positives = 104/181 (57%), Gaps = 5/181 (2%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDP---DFSESEKRLE 93
           D++V  GE  SA + +A +R  GI  + +D  E  I+   +     P    +    KRL 
Sbjct: 119 DYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLL 178

Query: 94  KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
               +     ++ TGFI +T D   TTL R GSD+SA I+GA L A ++ IW DVDGV +
Sbjct: 179 P-MLEDGKIPVV-TGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMT 236

Query: 154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
           ADPR V EA  +  LSY EA E++YFGA VLHPRT+ P M   IP+ ++N FN   PG +
Sbjct: 237 ADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTL 296

Query: 214 I 214
           I
Sbjct: 297 I 297

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298

>gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score =  168 bits (428), Expect = 3e-50
 Identities = 64/188 (34%), Positives = 104/188 (55%), Gaps = 2/188 (1%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  + +  D ++  GE  S+ + +  +R+ G+  +W D R VL  + +   +  PD +  
Sbjct: 106 GELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTD-SRFGRAAPDLNAL 164

Query: 89  EKRLEKWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD 147
            +   K      + T++ T GFI ST     TTL R GSD+SAA++   L A ++ IWTD
Sbjct: 165 AELAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTD 224

Query: 148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL 207
           V G+Y+ DPR    A  ++ +S+ EA EM+ FGA VLHP T++P +R +IP+ + +  + 
Sbjct: 225 VAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDP 284

Query: 208 SVPGIMIC 215
              G +I 
Sbjct: 285 EAGGTLIT 292

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292

>gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

 Score =  165 bits (420), Expect = 1e-45
 Identities = 92/259 (35%), Positives = 127/259 (49%), Gaps = 30/259 (11%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE---KW 95
           V+G GEL S  + AA +  +G+D  W+D RE L   P       P+ SE  + L    +W
Sbjct: 122 VLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALP------QPNQSEWSQYLSVSCQW 175

Query: 96  ---------FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
                    F+  P+  +I  GFIA   D     L R GSD SAA   A L A +V IWT
Sbjct: 176 QSDPALRERFAAQPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWT 235

Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV G++SA+P++V +A +L  L Y EA E++  GA VLHPR+I P     IP+ I +   
Sbjct: 236 DVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTER 295

Query: 207 LSVPGIMICRPPVDENEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265
             + G  I         D      P VK  +  + + LV++E  GM    G    +F   
Sbjct: 296 PDLSGTSI---------DGDAEPVPGVKAISRKNGIVLVSMETIGMWQQVGFLADVFTLF 346

Query: 266 KDVGANVIMISQASSEHSV 284
           K  G +V +IS  SSE +V
Sbjct: 347 KKHGLSVDLIS--SSETNV 363

Length = 861

>gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

 Score =  163 bits (416), Expect = 3e-45
 Identities = 70/164 (42%), Positives = 99/164 (60%), Gaps = 2/164 (1%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ 98
           VVGHGE+WSA+++AA++ + G+   W+D R  L     +  QVD     S   L++  +Q
Sbjct: 125 VVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVD--EGLSYPLLQQLLAQ 182

Query: 99  SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRK 158
            P   ++ TGFI+         L R+GSD+SA ++GAL    +VTIW+DV GVYSADPRK
Sbjct: 183 HPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRK 242

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR 202
           V +A +L  L   EA E++   A VLH RT+ PV   DI + +R
Sbjct: 243 VKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLR 286

Length = 810

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score =  151 bits (384), Expect = 1e-42
 Identities = 91/290 (31%), Positives = 145/290 (50%), Gaps = 33/290 (11%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSESE 89
           D ++  GE  S  +LA  ++  G+  +     +  I+  T S         +DP      
Sbjct: 67  DMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGII--TDSAHGKARITDIDPS----- 119

Query: 90  KRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
            R+ +   +     + +  GF     D   TTL R GSD +A  + A L+A +  I+TDV
Sbjct: 120 -RIREALDE---GDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDV 175

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ DPR V +A  L  +SY+E  E++  GA VLHPR++    +Y++P+ +R+ F+  
Sbjct: 176 DGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS-D 234

Query: 209 VPGIMICRPPVDENEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKD 267
            PG +I        E+E+I++ P V G A   + A V V   G+   PG A  IFGA+ +
Sbjct: 235 NPGTLIT------GEEEEIMEQPVVTGIAFDKDEAKVTV--VGVPDKPGIAAQIFGALAE 286

Query: 268 VGANVIMISQASSEH---SVCFAVPEKEVKAVAEALESKFREALNAGRLS 314
              NV MI Q  SE     + F VP  +++   E LE + ++ + A  ++
Sbjct: 287 ANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLE-EVKDEIGAESVT 335

Length = 404

>gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

 Score =  139 bits (352), Expect = 4e-39
 Identities = 67/182 (36%), Positives = 98/182 (53%), Gaps = 7/182 (3%)

Query: 39  VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ------VDPDFSESEKRL 92
           V+  GEL S ++ AA +   G+  KW+D RE+L   PT   +         +   ++  L
Sbjct: 114 VLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALL 173

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
           +K  +   +  II  GFIA         L R GSD SAA   A L+A +  IWTDV G++
Sbjct: 174 QKRLA-DGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLF 232

Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           +A+P +V  A +L+ L Y EA E++  GA VLHPR I P  R +IP+V+R+     + G 
Sbjct: 233 TANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGT 292

Query: 213 MI 214
           +I
Sbjct: 293 LI 294

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 295

>gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

 Score =  133 bits (337), Expect = 6e-37
 Identities = 56/180 (31%), Positives = 95/180 (52%), Gaps = 7/180 (3%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV-LIVNPTSSN-QVDPDFSESEKRLEK 94
           D +   GE  +AQ++AA +   GID +++  ++  L+V     N Q+ P   ES ++++K
Sbjct: 113 DALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILP---ESYQKIKK 169

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
                    ++  GF   + +    T  R GSD + AI+    +A     +TDVDG+Y+A
Sbjct: 170 LRD--SDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAA 227

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           +PR V+    +  ++Y+E  E+SY G +V H   +IP +   IPI I+N  +   PG +I
Sbjct: 228 NPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLI 287

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. Length = 288

>gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

 Score =  126 bits (318), Expect = 1e-34
 Identities = 63/187 (33%), Positives = 98/187 (52%), Gaps = 18/187 (9%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSES 88
            D ++  GE  SA +LA  + + GI    +   +  I+  T  +        +DP     
Sbjct: 64  LDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGIL--TDDHHGNARIIDIDP----- 116

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
            KR+ +   +   + ++  GF     D   TTL R GSD +A  + A L+A +  I+TDV
Sbjct: 117 -KRILEALEEG--DVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDV 173

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPR V +A  L  +SY E  EM+  GA VLHPR++    +Y++P+ +R+ F+  
Sbjct: 174 DGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFS-E 232

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 233 NPGTLIT 239

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239

>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed

 Score =  130 bits (329), Expect = 2e-34
 Identities = 67/214 (31%), Positives = 105/214 (49%), Gaps = 19/214 (8%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREV-LIVNPTSSN-QVDPDFSESEK 90
           +   D     GE  +A+++AA +   GI  +++D +E  +IV     N QV P   ES  
Sbjct: 109 DRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLP---ESYD 165

Query: 91  RLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDG 150
            L+K   +     ++  GF   T D    T  R GSD + AI+   ++A     +TDVDG
Sbjct: 166 NLKKL--RDRDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDG 223

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVP 210
           +Y+A+PR V     ++ ++Y+E  E+SY G +V H   +IP  R  IPI I+N  N   P
Sbjct: 224 IYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDP 283

Query: 211 GIMICRPPVDENEDEQIIDSPV------KGFATI 238
           G +I        + +    +P+      KGF +I
Sbjct: 284 GTLI------VPDRDNKNKNPITGIAGDKGFTSI 311

Length = 454

>gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

 Score =  121 bits (305), Expect = 1e-32
 Identities = 63/180 (35%), Positives = 93/180 (51%), Gaps = 8/180 (4%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPT--SSNQVDPDFSESE 89
           T+  TD +   GE  S  ++AA + ++GI    +D  +    +P      ++      S 
Sbjct: 62  TDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKITK---VST 118

Query: 90  KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVD 149
            RL+           I +GF  +       TL R GSD +AA++ A L+A ++ I TDVD
Sbjct: 119 DRLKSLLENG--ILPILSGFGGTDEKET-GTLGRGGSDSTAALLAAALKADRLVILTDVD 175

Query: 150 GVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
           GVY+ADPRKV +A +L  L+Y+EA E++Y GA VL P+   P  R  IP+ I N  N   
Sbjct: 176 GVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGA 235

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248

>gnl|CDD|178166 PLN02551, PLN02551, aspartokinase

 Score =  125 bits (317), Expect = 2e-32
 Identities = 79/281 (28%), Positives = 144/281 (51%), Gaps = 24/281 (8%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV---NPTSSNQVDPDFSESEKRL 92
            D++V  GE  S ++ AA + K G+  +  D  ++  +   + T+++ ++  +    KRL
Sbjct: 165 RDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL 224

Query: 93  EKWFSQSPSNTIIATGFIA-STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
              +   P+  ++ TGF+         TTL R GSD +A  +G  L   ++ +W DVDGV
Sbjct: 225 HGDWIDDPAVPVV-TGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGV 283

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
            + DPR    AV +  L++ EA E++YFGA VLHP+++ P    DIP+ ++N +N + PG
Sbjct: 284 LTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPG 343

Query: 212 IMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN 271
            +I +     +  + ++ S V       N+ ++++  T M G  G    +F   +D+G +
Sbjct: 344 TLITK---TRDMSKAVLTSIVLK----RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGIS 396

Query: 272 VIMISQASSEHSV----------CFAVPEKEVKAVAEALES 302
           V ++  A+SE S+             + ++E+  + E LE 
Sbjct: 397 VDVV--ATSEVSISLTLDPSKLWSRELIQQELDHLVEELEK 435

Length = 521

>gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed

 Score =  123 bits (311), Expect = 4e-32
 Identities = 75/268 (27%), Positives = 135/268 (50%), Gaps = 11/268 (4%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE-KRLEK 94
            D ++  GE+ S+ + + ++ +NGI    +   +  I+  T  N  +    E    R+ +
Sbjct: 71  QDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGII--TDDNFTNAKIIEVNPDRILE 128

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +   + ++  GF   T +   TTL R GSD +AA +G  L+A  V I+TDVDG+ +A
Sbjct: 129 ALEEG--DVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTA 186

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V +A +L  +SY E ++M+Y GA V+HPR +   M+ +IP+ IR+ ++   PG +I
Sbjct: 187 DPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYS-DSPGTLI 245

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
                 +   + + +  + G A + N+  + V+             +F A+ + G +V  
Sbjct: 246 TSLGDAKGGID-VEERLITGIAHVSNVTQIKVKAKE--NAYDLQQEVFKALAEAGISVDF 302

Query: 275 ISQASSEHSVCFAVPEKEVKAVAEALES 302
           I+       V F V +++ +   E LE+
Sbjct: 303 IN--IFPTEVVFTVSDEDSEKAKEILEN 328

Length = 403

>gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

 Score =  117 bits (295), Expect = 3e-31
 Identities = 63/180 (35%), Positives = 99/180 (55%), Gaps = 6/180 (3%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSE-SEKRLEK 94
            D ++  GE+ SA +L + +R  G+    +   +  I+  T  N  +    + + K++  
Sbjct: 69  LDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGIL--TDDNYSNAKIIKVNPKKILS 126

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
              +   + ++  GF   T D   TTL R GSD +AA +GA L A  V I+TDVDG+ +A
Sbjct: 127 ALKEG--DVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTA 184

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           DPR V  A IL  +SY E ++M++ GA V+HPR +   M+ +IPI IR+  +   PG +I
Sbjct: 185 DPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMS-ENPGTLI 243

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244

>gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

 Score =  115 bits (290), Expect = 2e-30
 Identities = 63/187 (33%), Positives = 94/187 (50%), Gaps = 18/187 (9%)

Query: 36  TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVDPDFSES 88
            D ++  GE  S  +LA  + + GI    +   +  I+  T  +        +DPD    
Sbjct: 64  LDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGIL--TDGHHGKARIIDIDPD---- 117

Query: 89  EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
             R+ +   +   + +I  GF     D   TTL R GSD SA  + A L A +  I+TDV
Sbjct: 118 --RIRELLEEG--DVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDV 173

Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
           DGVY+ADPR V +A  L  +SY E  EM+  GA VLHPR++    +Y +P+ + + F+  
Sbjct: 174 DGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFS-E 232

Query: 209 VPGIMIC 215
            PG +I 
Sbjct: 233 EPGTLIT 239

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score =  118 bits (297), Expect = 1e-29
 Identities = 70/213 (32%), Positives = 108/213 (50%), Gaps = 12/213 (5%)

Query: 102 NTIIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV 159
             ++  GF  I+ + +   TTL R GSD SA  + A L A    I+TDV GV + DPR V
Sbjct: 129 KVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLV 188

Query: 160 SEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV 219
            EA ++  +S  E  E++  GA+VLHPR +     Y +P+V+R+ ++ + PG ++  PP 
Sbjct: 189 PEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWSDA-PGTLVTSPPP 247

Query: 220 DENEDEQI-IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA 278
                  + +  PV G    ++ A V +    +   PG A  +F  +   G NV +I Q+
Sbjct: 248 RPRSLGGLELGKPVDGVELDEDQAKVALL--RVPDRPGIAAQLFEELAAQGVNVDLIIQS 305

Query: 279 SSEHS---VCFAVPEKEVK---AVAEALESKFR 305
             E +   + F V E E+K   AVAEA+     
Sbjct: 306 IHEGNSNDIAFTVAENELKKAEAVAEAIAPALG 338

Length = 587

>gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family

 Score =  110 bits (277), Expect = 8e-29
 Identities = 50/172 (29%), Positives = 72/172 (41%), Gaps = 26/172 (15%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
             VV  GE   A+ +A ++   G+    +D                       + +++  
Sbjct: 80  RIVVSLGERLGARAVALLLSDGGLPAVRLD-------------------LVDTEAIKELL 120

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
                   + TGF         TTL R  SD  AA++   L A ++ I TDVDGVY+ADP
Sbjct: 121 EAG--VVPVITGFGGENDTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADP 178

Query: 157 RKVSEAVILRTLSYQEAWEMS-----YFGANVLHPRTIIPVMRYDIPIVIRN 203
           RK  +A ++  LSY EA E+        G  V HP  +    R  IP+ I N
Sbjct: 179 RKNPDAKLIPELSYDEAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230

This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230

>gnl|CDD|153193 cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

 Score =  104 bits (263), Expect = 2e-28
 Identities = 39/74 (52%), Positives = 49/74 (66%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           +AL+N+EGTGM GVPG A  IF A+   G NVI+ISQASSEHS+ F V E +     EAL
Sbjct: 1   VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADKALEAL 60

Query: 301 ESKFREALNAGRLS 314
           E +F   + AG + 
Sbjct: 61  EEEFALEIKAGLIK 74

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Also included in this CD is the first of two ACT domains of a tetrameric, monofunctional, threonine-sensitive, AK found in Methanococcus jannaschii and other related archaeal species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 80

>gnl|CDD|235646 PRK05925, PRK05925, aspartate kinase; Provisional

 Score =  111 bits (280), Expect = 1e-27
 Identities = 55/175 (31%), Positives = 95/175 (54%), Gaps = 6/175 (3%)

Query: 43  GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQS-PS 101
           GE  SA ++ A      +  ++++ R+V I+      +  PD +  +     W   +   
Sbjct: 109 GEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRAVPDLALMQ---TAWHELALQE 164

Query: 102 NTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVS 160
           + I I  GFI +      T L R GSDFSA+++  L +A +V I+TDV+G+Y+ DP+ + 
Sbjct: 165 DAIYIMQGFIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIK 224

Query: 161 EAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
           +A ++  LS++E   ++ FGA VLHP  + P +R  IPI + + F+++  G  I 
Sbjct: 225 DAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIY 279

Length = 440

>gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated

 Score =  109 bits (274), Expect = 2e-27
 Identities = 58/180 (32%), Positives = 91/180 (50%), Gaps = 4/180 (2%)

Query: 22  FLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQV 81
            L N      +E+  D+++  GE  SA + A  +   GI  K +D  E+L    +  N  
Sbjct: 88  KLFNSRPDLPSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGN-A 146

Query: 82  DPDFSESEKRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAH 140
             D  +S++ ++  +       + +  GFI +  +    TL R GSD+SA  +G LL A 
Sbjct: 147 FIDIKKSKRNVKILYELLERGRVPVVPGFIGNL-NGFRATLGRGGSDYSAVALGVLLNAK 205

Query: 141 QVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
            V I +DV+G+Y+ADP+ V  A ++  LSY EA   +  G   LH + I PV +  IPI+
Sbjct: 206 AVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPV-KGKIPII 264

Length = 341

>gnl|CDD|239780 cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

 Score =  107 bits (268), Expect = 7e-27
 Identities = 58/179 (32%), Positives = 102/179 (56%), Gaps = 2/179 (1%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF-SESEKRLEKW 95
           D V+  GE  S + +AAV+R  G+D +++D   + +    S   +D  F  E  + L + 
Sbjct: 126 DLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHI-VDLDFSIEALDQTFYDELAQVLGEK 184

Query: 96  FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSAD 155
            +   +   + TGF  + P  + + + R  +D  AA+    L A ++ IW +VDG+++AD
Sbjct: 185 ITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTAD 244

Query: 156 PRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
           PRKV  A +L +++ +EA E++Y+G+ V+HP T+  V++  IPI I+N+ N    G +I
Sbjct: 245 PRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVI 303

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Length = 306

>gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative

 Score = 89.9 bits (223), Expect = 2e-20
 Identities = 48/169 (28%), Positives = 81/169 (47%), Gaps = 8/169 (4%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL 92
           E+  D+++  GE  SA + A      GI+ K +D  ++        N    D  +S++  
Sbjct: 94  EALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIFFAKGDFGN-AFIDIKKSKRNA 147

Query: 93  EKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
           +  +    S  I +  GF  +  +    TL R GSD+SA  +G LL +  V I +DV+G+
Sbjct: 148 KILYEVLESGKIPVIPGFYGNL-NGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGI 206

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
           ++ADP+ V  A ++  LSY+E    +  G   L  +       Y IP++
Sbjct: 207 FTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVL 255

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between [Amino acid biosynthesis, Aspartate family]. Length = 327

>gnl|CDD|153164 cd04892, ACT_AK-like_2, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

 Score = 79.8 bits (198), Expect = 3e-19
 Identities = 30/65 (46%), Positives = 39/65 (60%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           ALV+V G GM G PG A  IF A+ + G N+IMISQ SSE ++ F V E +     +AL 
Sbjct: 1   ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALH 60

Query: 302 SKFRE 306
            +F  
Sbjct: 61  EEFFL 65

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different AK isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are AKs with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 65

>gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated

 Score = 84.4 bits (209), Expect = 3e-18
 Identities = 57/215 (26%), Positives = 89/215 (41%), Gaps = 21/215 (9%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
           D ++  GE  S  +LA  + K G   + +   +  IV     N       ++   + +  
Sbjct: 67  DVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHIDTS-TITELL 125

Query: 97  SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADP 156
            Q     +I  GF     +   TTL R GSD +A  +   L A +  I+TDVDGVY+ DP
Sbjct: 126 EQD--QIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183

Query: 157 RKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR 216
           R V  A  L  + +     M+  GA VLH  ++    ++ +P+ + + F           
Sbjct: 184 RVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSF----------- 232

Query: 217 PPVDENEDEQIID----SPVKGFATIDNLALVNVE 247
              +  E   I        V G A   +LAL+ VE
Sbjct: 233 ---EVGEGTLIKGEAGTQAVCGIALQRDLALIEVE 264

Length = 392

>gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional

 Score = 78.8 bits (195), Expect = 3e-16
 Identities = 28/75 (37%), Positives = 42/75 (56%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK 291
           V+      ++ +V V G GMAG PG A  IF A+ + G N+ MISQ SSE ++ F V E+
Sbjct: 389 VRDVTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEE 448

Query: 292 EVKAVAEALESKFRE 306
           + +   + L  +F  
Sbjct: 449 DGERAVKVLHDEFIL 463

Length = 465

>gnl|CDD|153140 cd04868, ACT_AK-like, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

 Score = 69.4 bits (171), Expect = 2e-15
 Identities = 26/60 (43%), Positives = 37/60 (61%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A V++ G GM G PG A  IF A+ + G NV MISQ+ SE ++ F V E +++   +AL 
Sbjct: 1   AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH 60

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are aspartokinases with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this AK family CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 60

>gnl|CDD|153196 cd04924, ACT_AK-Arch_2, ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

 Score = 64.8 bits (158), Expect = 1e-13
 Identities = 30/64 (46%), Positives = 42/64 (65%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           +A+V V G+GM G PG A  +FGA+   G NVIMISQ SSE+++ F V E +  A  +A+
Sbjct: 1   VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAV 60

Query: 301 ESKF 304
             +F
Sbjct: 61  HDEF 64

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated

 Score = 67.5 bits (166), Expect = 2e-12
 Identities = 23/69 (33%), Positives = 37/69 (53%), Gaps = 2/69 (2%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
           + LALV + G  ++   G A  +FG ++    N+ MI   +S H++CF VPE + + V +
Sbjct: 382 EGLALVALIGNNLSKACGVAKRVFGVLEPF--NIRMICYGASSHNLCFLVPESDAEQVVQ 439

Query: 299 ALESKFREA 307
           AL     E 
Sbjct: 440 ALHQNLFEG 448

Length = 448

>gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 28/85 (32%), Positives = 41/85 (48%), Gaps = 6/85 (7%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D +AA+    + A  +   T+VDGVY ADP+K  +A     +SY E  +    G  V+  
Sbjct: 135 DTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKK---GLKVMDA 191

Query: 187 RTIIPVMRYDIPIVIRNIFNLSVPG 211
             +    R  IPI+   +FN   PG
Sbjct: 192 TALTLCRRNKIPII---VFNGLKPG 213

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229

>gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed

 Score = 57.1 bits (139), Expect = 4e-09
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV-PEKEVKAV 296
             +LA++ V G GM    G A  I  A+ +   N+ MI+Q SSE S+ F V  E   KAV
Sbjct: 382 EHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAV 441

Length = 454

>gnl|CDD|153189 cd04917, ACT_AKiii-LysC-EC_2, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

 Score = 50.7 bits (122), Expect = 1e-08
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           LALV + G  ++   G    IF A++D+  NV MI   +S H++CF V E++   V + L
Sbjct: 1   LALVALIGNDISETAGVEKRIFDALEDI--NVRMICYGASNHNLCFLVKEEDKDEVVQRL 58

Query: 301 ESKFRE 306
            S+  E
Sbjct: 59  HSRLFE 64

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 64

>gnl|CDD|153188 cd04916, ACT_AKiii-YclM-BS_2, ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           LAL+ V G GM    G +     A+   G N+ MI+Q SSE S+   V  ++     +A+
Sbjct: 1   LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAI 60

Query: 301 ESKF 304
             +F
Sbjct: 61  YEEF 64

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional

 Score = 53.6 bits (130), Expect = 2e-08
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 130 AAIMGA--LLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR 187
           A  +GA  LL+A      T+VDGVY ADP+K  +A     L+Y E  E       V+   
Sbjct: 144 AEEIGADVLLKA------TNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL---KVMDAT 194

Query: 188 TIIPVMRYDIPIVIRNIFNLSVPG 211
            I       IPI+   +FN++ PG
Sbjct: 195 AISLARDNKIPII---VFNMNKPG 215

Length = 231

>gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism]

 Score = 53.8 bits (130), Expect = 2e-08
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 127 DFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           D +AA+    + A  +   T  VDGVY ADP+K  +A    TL+Y E  ++      V+ 
Sbjct: 142 DTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLK---VMD 198

Query: 186 PRTIIPVMRYDIPIVIRNIFN 206
           P          IPI++ NI  
Sbjct: 199 PTAFSLARDNGIPIIVFNINK 219

Length = 238

>gnl|CDD|153194 cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

 Score = 49.7 bits (119), Expect = 3e-08
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPE-KEVKAVAEA 299
           L+++ + G GMAG PG A   F A+     N+  I+Q SSE ++   + E    KA+   
Sbjct: 1   LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAV 60

Query: 300 LESKF 304
            E  F
Sbjct: 61  HERFF 65

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66

>gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D +AA+    + A  +   T+VDGVY+ADP+K  +A    T++Y EA +       V+  
Sbjct: 138 DTAAALRAIEINADVILKGTNVDGVYTADPKKNKDAKKYDTITYNEALKK---NLKVMDL 194

Query: 187 RTIIPVMRYDIPIVIRNIF 205
                    ++PIV+ NI 
Sbjct: 195 TAFALARDNNLPIVVFNID 213

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232

>gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 50.6 bits (122), Expect = 2e-07
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+    + A  +   T VDGVY ADP+K   A     L+Y E       G  V+ 
Sbjct: 136 TDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GLKVMD 192

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                     ++PIV   +FN++ PG
Sbjct: 193 ATAFTLCRDNNLPIV---VFNINEPG 215

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231

>gnl|CDD|190133 pfam01842, ACT, ACT domain

 Score = 42.7 bits (101), Expect = 7e-06
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 250 GMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESKF 304
           G+   PG    +FGA+ D G N+  ISQ++S        +   V E++++A  EAL+   
Sbjct: 6   GVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALKKLL 65

Query: 305 R 305
            
Sbjct: 66  G 66

This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66

>gnl|CDD|239781 cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 42/182 (23%), Positives = 81/182 (44%), Gaps = 16/182 (8%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWF 96
           + +   GE  SA   A +++  G++ +++D          S  +   D +  E+  E + 
Sbjct: 134 ELLASLGEAHSAFNTALLLQNRGVNARFVDL---------SGWRDSGDMTLDERISEAFR 184

Query: 97  SQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSAD 155
              P + + I TG+ A   + +     R  S+ + + +  L  A +  I  +   + SAD
Sbjct: 185 DIDPRDELPIVTGY-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSAD 242

Query: 156 PRKVSEAV---ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           P+ V E     I RT +Y  A +++  G   +HP+    + +  IP+ ++N F    PG 
Sbjct: 243 PKLVGEDKARPIGRT-NYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGT 301

Query: 213 MI 214
           +I
Sbjct: 302 LI 303

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. Length = 304

>gnl|CDD|173023 PRK14558, pyrH, uridylate kinase; Provisional

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 3/80 (3%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+    ++A  +   T VDG+Y  DP+K  +A  +  L++ EA +M   G  V+ 
Sbjct: 134 TDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMD 190

Query: 186 PRTIIPVMRYDIPIVIRNIF 205
                   +Y I I++ N F
Sbjct: 191 TEAFSICKKYGITILVINFF 210

Length = 231

>gnl|CDD|153195 cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK 303
           V++ G GM   PG A  +F A+ + G N+ MIS  +SE  +   V E + +    AL   
Sbjct: 3   VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS--TSEIKISCLVDEDDAEKAVRALHEA 60

Query: 304 F 304
           F
Sbjct: 61  F 61

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63

>gnl|CDD|153208 cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

 Score = 41.7 bits (99), Expect = 1e-05
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A V++ G GM   PG A  +F A+ + G N+ MIS  +SE  +   + E + +    AL 
Sbjct: 1   AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS--TSEIKISCLIDEDDAEKAVRALH 58

Query: 302 SKFR 305
             F 
Sbjct: 59  EAFE 62

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the AKs of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single AKs found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis strain 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans AKs are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the second ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the second ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria AKs are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the second and fourth cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63

>gnl|CDD|233711 TIGR02076, pyrH_arch, uridylate kinase, putative

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 17/51 (33%), Positives = 27/51 (52%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177
           D  AA++    +A  +   T+VDGVY  DP+K  +A     L+ +E  E+ 
Sbjct: 118 DAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIV 168

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 221

>gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed

 Score = 45.5 bits (109), Expect = 2e-05
 Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
           D++A V+V G GM   PG A  +F A+ + G N+ MIS  +SE  +   + EK ++    
Sbjct: 338 DDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIS--TSEIKISVLIDEKYLELAVR 395

Query: 299 ALESKF 304
           AL   F
Sbjct: 396 ALHEAF 401

Length = 404

>gnl|CDD|239786 cd04253, AAK_UMPK-PyrH-Pf, AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

 Score = 44.9 bits (107), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 27/51 (52%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS 177
           D  AA++   L A  +   T+VDGVYS DPRK  +A     LS  E  ++ 
Sbjct: 118 DAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIV 168

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 221

>gnl|CDD|236396 PRK09181, PRK09181, aspartate kinase; Validated

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 67/275 (24%), Positives = 118/275 (42%), Gaps = 35/275 (12%)

Query: 43  GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ-SPS 101
           GE  SA   A +++  G++ +++D           +   D D    ++R++K F     +
Sbjct: 146 GEAHSAFNTALLLQNRGVNARFVDL----------TGWDDDDPLTLDERIKKAFKDIDVT 195

Query: 102 NTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY---SADPR 157
             + I TG+ A   + +  T  R  S+ + + +  L  A +  I  +    Y   SADP+
Sbjct: 196 KELPIVTGY-AKCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKE----YHLSSADPK 250

Query: 158 KVSE--AV-ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMI 214
            V E   V I RT +Y  A +++  G   +HP+    + +  IP+ I+N F    PG +I
Sbjct: 251 LVGEDKVVPIGRT-NYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHPGTLI 309

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
            +  V E    +II       A  D +  + V    M G  G    I   +      V  
Sbjct: 310 TKDYVSEQPRVEII-------AGSDKVFALEVFDQDMVGEDGYDLEILEILTR--HKVSY 360

Query: 275 ISQASSEHSVCFAVPE--KEVKAVAEALESKFREA 307
           IS+A++ +++   +    K +K V   LE ++  A
Sbjct: 361 ISKATNANTITHYLWGSLKTLKRVIAELEKRYPNA 395

Length = 475

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 42.6 bits (101), Expect = 2e-04
 Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 4/70 (5%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKE-VKAVAEAL 300
           A V++ G GM G PG A  +F A+ D G N+ MI  A+SE      V E + VKA+ +A+
Sbjct: 520 AKVSIVGAGMPGTPGVAARMFRALADAGINIEMI--ATSEIRTSCVVAEDDGVKAL-QAV 576

Query: 301 ESKFREALNA 310
              F  A   
Sbjct: 577 HQAFGLAGEE 586

Length = 587

>gnl|CDD|153185 cd04913, ACT_AKii-LysC-BS-like_1, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

 Score = 39.0 bits (92), Expect = 2e-04
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHS---VCFAVPEKEVKAVAEALESKFREALNA 310
            PG A  IFGA+ +   NV MI Q  S      + F VP+ ++K     LE K ++ L A
Sbjct: 12  KPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLE-KLKKELGA 70

Query: 311 GRL 313
             +
Sbjct: 71  EEV 73

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomonas aeruginosa, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the first ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the first ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria aspartokinases are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the first and third cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75

>gnl|CDD|222411 pfam13840, ACT_7, Family description

 Score = 38.3 bits (90), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 237 TIDNLALVNVEGTGMAG-VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA 295
           + D    ++V G G+   VPG    I   + + G ++  IS   +  +    VPE++++ 
Sbjct: 2   SEDGWRKLSVVGPGLDFDVPGILAKITSPLAEAGISIFQIS---TYDTDYILVPEEDLEK 58

Query: 296 VAEALES 302
              AL  
Sbjct: 59  AVNALHE 65

The ACT domain is a structural motif of 70-90 amino acids that functions in the control of metabolism, solute transport and signal transduction. They are thus found in a variety of different proteins in a variety of different arrangements. In mammalian phenylalanine hydroxylase the domain forms no contacts but promotes an allosteric effect despite the apparent lack of ligand binding. Length = 65

>gnl|CDD|239775 cd04242, AAK_G5K_ProB, AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

 Score = 40.5 bits (96), Expect = 6e-04
 Identities = 11/38 (28%), Positives = 24/38 (63%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167
           +A++  L+ A  + + +DVDG+Y  +PR+  +A ++  
Sbjct: 148 SALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPE 185

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requirement and the proline-triggered aggregation are greatly diminished and abolished, respectively, and more proline is needed for inhibition. Although plant and animal G5Ks are part of a bifunctional polypeptide, delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR; ProA); bacterial and yeast G5Ks are monofunctional single-polypeptide enzymes. In this CD, all three domain architectures are present: G5K, G5K+PUA, and G5K+G5PR. Length = 251

>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 6/67 (8%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVP----EKEVK 294
            N+A +++ G GM G PG A  +F  + + G N+ MIS  +SE  V   +     +K ++
Sbjct: 346 TNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEVKVSCVIDAEDGDKALR 403

Query: 295 AVAEALE 301
           AV EA E
Sbjct: 404 AVCEAFE 410

Length = 587

>gnl|CDD|235460 PRK05429, PRK05429, gamma-glutamyl kinase; Provisional

 Score = 40.1 bits (95), Expect = 0.001
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRT 167
           D  +A++  L+ A  + + TDVDG+Y+ADPRK  +A ++  
Sbjct: 154 DTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPE 194

Length = 372

>gnl|CDD|223341 COG0263, ProB, Glutamate 5-kinase [Amino acid transport and metabolism]

 Score = 39.9 bits (94), Expect = 0.001
 Identities = 12/39 (30%), Positives = 25/39 (64%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165
           D  +A++  L+ A  + + +D+DG+Y A+PR   +A ++
Sbjct: 152 DTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLI 190

Length = 369

>gnl|CDD|162163 TIGR01027, proB, glutamate 5-kinase

 Score = 39.6 bits (93), Expect = 0.001
 Identities = 15/39 (38%), Positives = 25/39 (64%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL 165
           D  +A++  L+ A  + + TDVDG+Y ADPR   +A ++
Sbjct: 146 DTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLI 184

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family [Amino acid biosynthesis, Glutamate family]. Length = 363

>gnl|CDD|239788 cd04255, AAK_UMPK-MosAB, AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

 Score = 38.5 bits (90), Expect = 0.003
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE 172
           +D  A ++  ++ A  +    D DG+Y+ADP+K  +A  +  +S  E
Sbjct: 163 TDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAE 209

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 262

>gnl|CDD|153163 cd04891, ACT_AK-LysC-DapG-like_1, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

 Score = 35.2 bits (82), Expect = 0.003
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 254 VPGTANAIFGAVKDVGANVIMISQASSEHS---VCFAVPEKEVKAVAEALE 301
            PG A  IF A+ + G NV MI Q+ S      + F VP+ +++     LE
Sbjct: 11  KPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLEKALAILE 61

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 61

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	100.0
PLN02551	521	aspartokinase	100.0
PRK09084	448	aspartate kinase III; Validated	100.0
PRK09034	454	aspartate kinase; Reviewed	100.0
PRK06291	465	aspartate kinase; Provisional	100.0
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	100.0
PRK09181	475	aspartate kinase; Validated	100.0
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	100.0
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	100.0
PRK05925	440	aspartate kinase; Provisional	100.0
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	100.0
PRK08841	392	aspartate kinase; Validated	100.0
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	100.0
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	100.0
PRK06635	404	aspartate kinase; Reviewed	100.0
PRK08210	403	aspartate kinase I; Reviewed	100.0
PRK07431	587	aspartate kinase; Provisional	100.0
cd04245	288	AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki	100.0
cd04257	294	AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa	100.0
cd04258	292	AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki	100.0
PRK08373	341	aspartate kinase; Validated	100.0
cd04243	293	AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina	100.0
cd04247	306	AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa	100.0
cd04244	298	AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina	100.0
cd04259	295	AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super	100.0
cd04248	304	AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S	100.0
TIGR02078	327	AspKin_pair Pyrococcus aspartate kinase subunit, p	100.0
cd04261	239	AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina	100.0
cd04234	227	AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK)	100.0
cd04260	244	AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase	100.0
cd04246	239	AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina	100.0
cd02115	248	AAK Amino Acid Kinases (AAK) superfamily, catalyti	99.95
PRK14558	231	pyrH uridylate kinase; Provisional	99.91
PF00696	242	AA_kinase: Amino acid kinase family Match to Gluta	99.89
cd04242	251	AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K	99.89
cd04239	229	AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik	99.88
PRK00358	231	pyrH uridylate kinase; Provisional	99.88
PRK12314	266	gamma-glutamyl kinase; Provisional	99.87
PRK14557	247	pyrH uridylate kinase; Provisional	99.87
cd04254	231	AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi	99.86
TIGR02075	233	pyrH_bact uridylate kinase. This protein, also cal	99.85
PRK13402	368	gamma-glutamyl kinase; Provisional	99.83
COG0528	238	PyrH Uridylate kinase [Nucleotide transport and me	99.83
PRK14556	249	pyrH uridylate kinase; Provisional	99.81
cd04253	221	AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP	99.8
PRK05429	372	gamma-glutamyl kinase; Provisional	99.79
cd04241	252	AAK_FomA-like AAK_FomA-like: This CD includes a fo	99.79
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	99.78
PRK14058	268	acetylglutamate/acetylaminoadipate kinase; Provisi	99.77
TIGR02076	221	pyrH_arch uridylate kinase, putative. This family	99.77
cd04250	279	AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase	99.75
TIGR00761	231	argB acetylglutamate kinase. This model describes	99.74
cd04249	252	AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina	99.73
PRK00942	283	acetylglutamate kinase; Provisional	99.72
cd04238	256	AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate	99.7
PLN02512	309	acetylglutamate kinase	99.69
cd04251	257	AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina	99.68
CHL00202	284	argB acetylglutamate kinase; Provisional	99.68
cd04255	262	AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th	99.66
cd04256	284	AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase	99.65
PTZ00489	264	glutamate 5-kinase; Provisional	99.65
PLN02418	718	delta-1-pyrroline-5-carboxylate synthase	99.64
COG0263	369	ProB Glutamate 5-kinase [Amino acid transport and	99.63
COG1608	252	Predicted archaeal kinase [General function predic	99.59
COG0548	265	ArgB Acetylglutamate kinase [Amino acid transport	99.55
cd04915	66	ACT_AK-Ectoine_2 ACT domains located C-terminal to	99.49
cd04236	271	AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA	99.48
TIGR01092	715	P5CS delta l-pyrroline-5-carboxylate synthetase. T	99.45
cd04918	65	ACT_AK1-AT_2 ACT domains located C-terminal to the	99.44
cd04252	248	AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam	99.43
cd04919	66	ACT_AK-Hom3_2 ACT domains located C-terminal to th	99.42
cd04235	308	AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot	99.42
PRK12353	314	putative amino acid kinase; Reviewed	99.39
cd04922	66	ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona	99.38
cd04937	64	ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela	99.37
cd04920	63	ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AK	99.35
cd04921	80	ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc	99.35
cd04237	280	AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG)	99.34
PRK05279	441	N-acetylglutamate synthase; Validated	99.34
cd04917	64	ACT_AKiii-LysC-EC_2 ACT domains located C-terminal	99.33
TIGR00746	310	arcC carbamate kinase. The seed alignment for this	99.3
cd04916	66	ACT_AKiii-YclM-BS_2 ACT domains located C-terminal	99.3
cd04924	66	ACT_AK-Arch_2 ACT domains of a monofunctional aspa	99.28
TIGR01890	429	N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi	99.27
PRK12686	312	carbamate kinase; Reviewed	99.25
cd04240	203	AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin	99.22
PRK12454	313	carbamate kinase-like carbamoyl phosphate syntheta	99.19
PRK06291	465	aspartate kinase; Provisional	99.18
COG0527	447	LysC Aspartokinases [Amino acid transport and meta	99.16
PF13840	65	ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2	99.14
PRK09034	454	aspartate kinase; Reviewed	99.12
PRK12354	307	carbamate kinase; Reviewed	99.11
PRK09436	819	thrA bifunctional aspartokinase I/homoserine dehyd	99.1
KOG1154	285	consensus Gamma-glutamyl kinase [Amino acid transp	99.08
PRK09411	297	carbamate kinase; Reviewed	99.08
PRK12352	316	putative carbamate kinase; Reviewed	99.01
cd04892	65	ACT_AK-like_2 ACT domains C-terminal to the cataly	99.0
cd04936	63	ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-	98.97
cd04923	63	ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-	98.95
TIGR00656	401	asp_kin_monofn aspartate kinase, monofunctional cl	98.9
PRK04531	398	acetylglutamate kinase; Provisional	98.89
PRK07431	587	aspartate kinase; Provisional	98.87
COG2054	212	Uncharacterized archaeal kinase related to asparto	98.84
PLN02825	515	amino-acid N-acetyltransferase	98.84
TIGR00657	441	asp_kinases aspartate kinase. The Lys-sensitive en	98.81
cd04868	60	ACT_AK-like ACT domains C-terminal to the catalyti	98.77
PRK09466	810	metL bifunctional aspartate kinase II/homoserine d	98.74
PRK08210	403	aspartate kinase I; Reviewed	98.73
cd04912	75	ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter	98.64
cd04933	78	ACT_AK1-AT_1 ACT domains located C-terminal to the	98.64
PRK06635	404	aspartate kinase; Reviewed	98.62
cd04932	75	ACT_AKiii-LysC-EC_1 ACT domains located C-terminal	98.53
cd04934	73	ACT_AK-Hom3_1 CT domains located C-terminal to the	98.5
cd04913	75	ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-	98.47
cd04891	61	ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-	98.47
cd04935	75	ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK	98.44
cd04890	62	ACT_AK-like_1 ACT domains found C-terminal to the	98.41
COG0549	312	ArcC Carbamate kinase [Amino acid transport and me	98.23
cd04914	67	ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela	98.16
PRK09084	448	aspartate kinase III; Validated	98.09
PLN02551	521	aspartokinase	98.03
PRK09181	475	aspartate kinase; Validated	97.89
PRK08961	861	bifunctional aspartate kinase/diaminopimelate deca	97.68
cd04910	71	ACT_AK-Ectoine_1 ACT domains located C-terminal to	97.28
PF01842	66	ACT: ACT domain; InterPro: IPR002912 The ACT domai	96.97
PRK05925	440	aspartate kinase; Provisional	96.86
cd04911	76	ACT_AKiii-YclM-BS_1 ACT domains located C-terminal	96.69
COG3830	90	ACT domain-containing protein [Signal transduction	96.57
KOG2436	520	consensus Acetylglutamate kinase/acetylglutamate s	95.74
cd04888	76	ACT_PheB-BS C-terminal ACT domain of a small (~147	95.52
PRK08841	392	aspartate kinase; Validated	95.1
COG3603	128	Uncharacterized conserved protein [Function unknow	94.87
cd04908	66	ACT_Bt0572_1 N-terminal ACT domain of a novel prot	94.04
PRK13562	84	acetolactate synthase 1 regulatory subunit; Provis	94.03
cd02116	60	ACT ACT domains are commonly involved in specifica	93.87
PRK04435	147	hypothetical protein; Provisional	93.26
KOG0456	559	consensus Aspartate kinase [Amino acid transport a	92.2
cd04870	75	ACT_PSP_1 CT domains found N-terminal of phosphose	91.82
PF13740	76	ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A.	91.74
PRK06737	76	acetolactate synthase 1 regulatory subunit; Valida	91.68
PRK08178	96	acetolactate synthase 1 regulatory subunit; Review	91.09
cd04882	65	ACT_Bt0572_2 C-terminal ACT domain of a novel prot	90.1
cd04872	88	ACT_1ZPV ACT domain proteins similar to the yet un	89.22
CHL00100	174	ilvH acetohydroxyacid synthase small subunit	88.85
cd04875	74	ACT_F4HF-DF N-terminal ACT domain of formyltetrahy	88.8
PRK11152	76	ilvM acetolactate synthase 2 regulatory subunit; P	88.71
cd04883	72	ACT_AcuB C-terminal ACT domain of the Bacillus sub	88.7
COG4747	142	ACT domain-containing protein [General function pr	87.71
cd04886	73	ACT_ThrD-II-like C-terminal ACT domain of biodegra	87.56
PRK00194	90	hypothetical protein; Validated	87.44
cd04909	69	ACT_PDH-BS C-terminal ACT domain of the monofuncti	87.29
PRK11895	161	ilvH acetolactate synthase 3 regulatory subunit; R	87.24
cd04869	81	ACT_GcvR_2 ACT domains that comprise the Glycine C	86.98
cd04889	56	ACT_PDH-BS-like C-terminal ACT domain of the monof	86.82
cd04880	75	ACT_AAAH-PDT-like ACT domain of the nonheme iron-d	85.27
cd04893	77	ACT_GcvR_1 ACT domains that comprise the Glycine C	84.62
TIGR00119	157	acolac_sm acetolactate synthase, small subunit. ac	84.42
cd04903	71	ACT_LSD C-terminal ACT domain of the L-serine dehy	81.45
PRK13010	289	purU formyltetrahydrofolate deformylase; Reviewed	81.03
COG0440	163	IlvH Acetolactate synthase, small (regulatory) sub	80.56

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=100.00  E-value=6.5e-60  Score=465.88  Aligned_cols=272  Identities=40%  Similarity=0.617  Sum_probs=253.8

Q ss_pred             CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEee
Q 020132           29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG  108 (330)
Q Consensus        29 ~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G  108 (330)
                      ++.+++.+|+++|+||++|+++|+.+|+++|++|++++++++++.+++.++++.+....++..+..+++  .+.|||++|
T Consensus       104 ~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~--~~~v~Vv~G  181 (447)
T COG0527         104 GEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLE--EGKVPVVAG  181 (447)
T ss_pred             cCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhc--CCcEEEecC
Confidence            567899999999999999999999999999999999999999999988888877766555443666776  889999999


Q ss_pred             eeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccc
Q 020132          109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT  188 (330)
Q Consensus       109 ~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a  188 (330)
                      |+|.+++|+++|||||||||+|++||++|+|+++.||||||||||+|||++|+|++|++|||+||.||+++|++|+||+|
T Consensus       182 F~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHpra  261 (447)
T COG0527         182 FQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRA  261 (447)
T ss_pred             ceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecccccCCCCchhhhhhhhccc
Q 020132          189 IIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDV  268 (330)
Q Consensus       189 ~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~  268 (330)
                      ++||++++||++|+|+++|+.+||+|.+...+.       ...+++|+..+|+++|++.|..|...+|+.+++|..|+++
T Consensus       262 v~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~~-------~~~v~gIa~~~~~~~i~v~~~~~~~~~g~~a~vf~~l~~~  334 (447)
T COG0527         262 VEPAMRSGIPLRIKNTFNPDAPGTLITAETESD-------EPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEA  334 (447)
T ss_pred             HHHHHhcCCcEEEEecCCCCCCceEEecCCcCC-------CCceEEEEeCCCeEEEEEEccCccccccHHHHHHHHHHHc
Confidence            999999999999999999999999998875432       1568899999999999999999999999999999999999


Q ss_pred             CccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHHhc
Q 020132          269 GANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN  309 (330)
Q Consensus       269 gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~~~  309 (330)
                      ||+++||.|+.++.+++|++++.+.+++.+.||+.+.....
T Consensus       335 ~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~  375 (447)
T COG0527         335 GINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLA  375 (447)
T ss_pred             CCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcc
Confidence            99999999999999999999999999999999999875553

>PLN02551 aspartokinase

Probab=100.00  E-value=8.3e-60  Score=473.67  Aligned_cols=287  Identities=26%  Similarity=0.434  Sum_probs=247.7

Q ss_pred             hhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHH
Q 020132           18 STYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL   92 (330)
Q Consensus        18 ~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i   92 (330)
                      ..++.|++++.     ++.+++.+|.++|+||+||+++|+.+|+++|++|.+++++++++++++.+++++++ +.+.+.+
T Consensus       142 ~~~~~l~~ll~~i~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~-~~~~~~l  220 (521)
T PLN02551        142 KLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL-EATYPAV  220 (521)
T ss_pred             HHHHHHHHHHHhhhhhcccchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchh-hhhHHHH
Confidence            33444554443     46788899999999999999999999999999999999999988888888887765 3444555


Q ss_pred             HHhhcc---CCCccEEEeeeeecC-CCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhh
Q 020132           93 EKWFSQ---SPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (330)
Q Consensus        93 ~~~l~~---~~~~VpVv~G~i~~~-~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~i  168 (330)
                      ++.+..   ..+.|||++||+|.+ .+|.++||||||||++|+++|++|+|+++.||||||||||+||+.+|+|+++++|
T Consensus       221 ~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~l  300 (521)
T PLN02551        221 AKRLHGDWIDDPAVPVVTGFLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYL  300 (521)
T ss_pred             HHHHHhhhccCCeEEEEcCccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEeccc
Confidence            555421   245899999999999 8999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeCCCC-C----------C---------Ccc----
Q 020132          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV-D----------E---------NED----  224 (330)
Q Consensus       169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~-~----------~---------~~~----  224 (330)
                      ||+||.||+++|++||||+|++||++++||++|+|+++|+.+||+|..... +          .         ..|    
T Consensus       301 sy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi~vknt~~p~~~GT~I~~~~~~~~~~v~~It~~~~v~li~i~~~~m~~~~  380 (521)
T PLN02551        301 TFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPGTLITKTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQY  380 (521)
T ss_pred             CHHHHHHHHhCCCcccCHHHHHHHHHCCceEEEEecCCCCCCCcEEecccccCCCcccceecCCCeEEEEEecCCCCCcc
Confidence            999999999999999999999999999999999999999999999964321 0          0         000    


Q ss_pred             ------------------------------c---c--c-------c------cCCcccceeecceeEEeeecccccCCCC
Q 020132          225 ------------------------------E---Q--I-------I------DSPVKGFATIDNLALVNVEGTGMAGVPG  256 (330)
Q Consensus       225 ------------------------------~---~--~-------~------~~~~~~i~~~~nia~IsvvG~~~~~~~g  256 (330)
                                                    .   .  .       .      -..+..+.+.+++++|++||. |..++|
T Consensus       381 g~~arvf~~l~~~~I~Vd~IssSe~sIs~~v~~~~~~~~~~i~~~l~~l~~el~~~~~V~v~~~vAiISvVG~-~~~~~g  459 (521)
T PLN02551        381 GFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHLVEELEKIAVVNLLQGRSIISLIGN-VQRSSL  459 (521)
T ss_pred             cHHHHHHHHHHHcCCcEEEEeccCCEEEEEEehhHhhhhhhHHHHHHHHHHHhhcCCeEEEeCCEEEEEEEcc-CCCCcc
Confidence                                          0   0  0       0      011345777899999999998 788999


Q ss_pred             chhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       257 v~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      +++++|++|+++||||.||+|++|+++|||+|+++|.++++++||+.|+.
T Consensus       460 vaariF~aLa~~gInV~mIsqgaSeinIS~vV~~~d~~~Av~aLH~~Ff~  509 (521)
T PLN02551        460 ILEKVFRVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVRALHSAFFE  509 (521)
T ss_pred             HHHHHHHHHHHCCCCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999975

>PRK09084 aspartate kinase III; Validated

Probab=100.00  E-value=1.6e-55  Score=437.75  Aligned_cols=288  Identities=31%  Similarity=0.542  Sum_probs=248.6

Q ss_pred             HHHhhhcccccCCCC---CccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHH
Q 020132           15 FIRSTYNFLSNVDSG---HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR   91 (330)
Q Consensus        15 ~i~~~~~~l~~~~~~---~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~   91 (330)
                      .++..++.|++++.+   +.+++.+|.++|+||+|||++++.+|+++|++|.++++++++ .+++.++++++++..+...
T Consensus        85 ~i~~~~~~l~~l~~~~~~~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i-~t~~~~~~~~~~~~~~~~~  163 (448)
T PRK09084         85 EIERLLENITVLAEAASLATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVM-RTDDRFGRAEPDVAALAEL  163 (448)
T ss_pred             HHHHHHHHHHHHHHhhhhcCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeE-EecCCCCcccccHHHHHHH
Confidence            355566777776654   467789999999999999999999999999999999999995 4667788888888777655


Q ss_pred             HHHhhcc--CCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhh
Q 020132           92 LEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (330)
Q Consensus        92 i~~~l~~--~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is  169 (330)
                      +.+.+..  ..+ |||++||+|.+.+|.++||||||||++|+++|++|+|+++++|||||||||+||+++|+|+++++|+
T Consensus       164 ~~~~~~~~~~~~-v~Vv~Gf~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is  242 (448)
T PRK09084        164 AQEQLLPLLAEG-VVVTQGFIGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEIS  242 (448)
T ss_pred             HHHHHHHhhcCC-cEEecCeeecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCC
Confidence            5544432  245 9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeCCCCCC-------------------Ccc------
Q 020132          170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE-------------------NED------  224 (330)
Q Consensus       170 ~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~-------------------~~~------  224 (330)
                      |+||.+|+++|++++||+++.+|++++||++|+|+++|+.+||+|.+.....                   ..+      
T Consensus       243 ~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~~~~~v~~it~~~~i~lItv~~~~~~~~~g~  322 (448)
T PRK09084        243 FEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTENPPLFRAIALRRNQTLLTLHSLNMLHARGF  322 (448)
T ss_pred             HHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCCCCCeeEEEEeeCCEEEEEEecCCCCccccH
Confidence            9999999999999999999999999999999999999998999997542100                   000      


Q ss_pred             ----------------------------cc--c-c--------------cCCcccceeecceeEEeeecccccCCCCchh
Q 020132          225 ----------------------------EQ--I-I--------------DSPVKGFATIDNLALVNVEGTGMAGVPGTAN  259 (330)
Q Consensus       225 ----------------------------~~--~-~--------------~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a  259 (330)
                                                  ..  . .              -+.+..+.+.+|+++|+++|.+|+++||+++
T Consensus       323 ~a~if~~l~~~~I~Vd~I~sse~sIs~~i~~~~~~~~~~~~~~~~l~~el~~~~~i~~~~~va~IsvvG~gm~~~~gv~a  402 (448)
T PRK09084        323 LAEVFGILARHKISVDLITTSEVSVSLTLDTTGSTSTGDTLLTQALLTELSQLCRVEVEEGLALVALIGNNLSKACGVAK  402 (448)
T ss_pred             HHHHHHHHHHcCCeEEEEeccCcEEEEEEechhhhhhhhHHHHHHHHHHHhcCCeEEEECCeEEEEEECCCcccCcChHH
Confidence                                        00  0 0              0113457778999999999999999999999


Q ss_pred             hhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          260 AIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       260 ~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      |+|++|++  +||.||+|++|+++|||+|+++|.+++++.||++|+.
T Consensus       403 rif~aL~~--~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH~~f~~  447 (448)
T PRK09084        403 RVFGVLEP--FNIRMICYGASSHNLCFLVPESDAEQVVQALHQNLFE  447 (448)
T ss_pred             HHHHHHHh--CCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHHHHHhc
Confidence            99999986  6899999999999999999999999999999999974

>PRK09034 aspartate kinase; Reviewed

Probab=100.00  E-value=8.3e-55  Score=433.39  Aligned_cols=278  Identities=26%  Similarity=0.417  Sum_probs=245.3

Q ss_pred             hcccccCCCCCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccC
Q 020132           20 YNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQS   99 (330)
Q Consensus        20 ~~~l~~~~~~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~   99 (330)
                      ++.|..++. +.+++.+|.++|+||++|+++++.+|+++|+++.++++++++++++++++++.++. .+.+.+..++.  
T Consensus        97 l~~l~~~~~-~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~-~~~~~~~~~~~--  172 (454)
T PRK09034         97 LEHLANLAS-RNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLP-ESYDNLKKLRD--  172 (454)
T ss_pred             HHHHHHhhc-cCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcH-hhHHHHHHHHh--
Confidence            444444433 45778889999999999999999999999999999999999888888888766654 34566666665  


Q ss_pred             CCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhc
Q 020132          100 PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF  179 (330)
Q Consensus       100 ~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~  179 (330)
                      .+.|||++||+|.+.+|++++|||||||++|+++|++|+|+++.+|||||||||+||+.+|+|+++++|||+||.+|+++
T Consensus       173 ~~~v~Vv~GFig~~~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~  252 (454)
T PRK09034        173 RDEKLVIPGFFGVTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYA  252 (454)
T ss_pred             cCCEEEecCccccCCCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccceeeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecccccCCCCchh
Q 020132          180 GANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTAN  259 (330)
Q Consensus       180 g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a  259 (330)
                      |+++|||+|+.||++++||++|+|+++|+.+||+|.......      ....+++|+..+|+++|++.|.+|...+|+++
T Consensus       253 Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~~~GT~I~~~~~~~------~~~~Vk~It~~~~i~~Itv~~~~~~~~~g~~a  326 (454)
T PRK09034        253 GFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVPDRDNK------NKNPITGIAGDKGFTSIYISKYLMNREVGFGR  326 (454)
T ss_pred             CcccCCHHHHHHHHHcCCCEEEEcCCCCCCCccEEEeccccC------ccccceEEEecCCEEEEEEccCCCCCCccHHH
Confidence            999999999999999999999999999999999997643211      11469999999999999999988999999999


Q ss_pred             hhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHH-HHHHHHHHHHhc
Q 020132          260 AIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA-EALESKFREALN  309 (330)
Q Consensus       260 ~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av-~~Lh~~f~~~~~  309 (330)
                      ++|+.|+++||+|+|++  +|+.++||++++++..++. +.+.++|..++.
T Consensus       327 ~if~~la~~~I~Vd~i~--ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~  375 (454)
T PRK09034        327 KVLQILEDHGISYEHMP--SGIDDLSIIIRERQLTPKKEDEILAEIKQELN  375 (454)
T ss_pred             HHHHHHHHcCCeEEEEc--CCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhC
Confidence            99999999999999996  7789999999999987765 666666655553

>PRK06291 aspartate kinase; Provisional

Probab=100.00  E-value=1.2e-54  Score=433.71  Aligned_cols=280  Identities=42%  Similarity=0.645  Sum_probs=251.9

Q ss_pred             hhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCC---chhhH
Q 020132           18 STYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---FSESE   89 (330)
Q Consensus        18 ~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~~~~~   89 (330)
                      ..++.|++++.     ++++++.+|.++|+||+|||++++.+|+++|++|.+++++++++++++.++.+.++   +....
T Consensus        99 ~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~  178 (465)
T PRK06291         99 SRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVK  178 (465)
T ss_pred             HHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHH
Confidence            33455555543     35677889999999999999999999999999999999999877777777765543   34444


Q ss_pred             HHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is  169 (330)
                      +.++.+++  .+.|||++||+|.+.+|.++|+||||||++|+.+|.+|+|+++++||||||||++||+.+|+|+++++++
T Consensus       179 ~~~~~ll~--~~~vpVv~Gfig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~  256 (465)
T PRK06291        179 ERLEPLLK--EGVIPVVTGFIGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKIS  256 (465)
T ss_pred             HHHHHHhh--cCcEEEEeCcEEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccC
Confidence            56677776  7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecc
Q 020132          170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGT  249 (330)
Q Consensus       170 ~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~  249 (330)
                      |+||.+++++|++++||+|+.+|+++|||++|.|+++|+.+||+|.+....       ....+++|+..+|+++|+++|.
T Consensus       257 ~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~-------~~~~V~~It~~~~valIsI~g~  329 (465)
T PRK06291        257 YIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSES-------SKRVVKAVTLIKNVALINISGA  329 (465)
T ss_pred             HHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccc-------cCcccceEEeeCCEEEEEEeCC
Confidence            999999999999999999999999999999999999999999999764321       1246899999999999999999


Q ss_pred             cccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          250 GMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       250 ~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      +|...+|+++++|+.|+++||+|+||+|++|+.+++|++++++.+++++.||+.|..
T Consensus       330 ~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~av~~L~~~~~~  386 (465)
T PRK06291        330 GMVGVPGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEKALKALRREFGE  386 (465)
T ss_pred             CCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998864

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=100.00  E-value=1.7e-54  Score=456.59  Aligned_cols=294  Identities=40%  Similarity=0.659  Sum_probs=265.1

Q ss_pred             HHHHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhh
Q 020132           14 EFIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES   88 (330)
Q Consensus        14 ~~i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~   88 (330)
                      +.|+..++.|+.++.     ++++++.+|+++|+||+||+++++.+|+++|++|++++++++++ +++.++++.++++.+
T Consensus        92 ~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~-t~~~~~~~~~~~~~~  170 (819)
T PRK09436         92 AKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLL-ADGHYLESTVDIAES  170 (819)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEE-ecCCCCCceechHhh
Confidence            345555666666554     36788899999999999999999999999999999999999865 566777788888788


Q ss_pred             HHHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhh
Q 020132           89 EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTL  168 (330)
Q Consensus        89 ~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~i  168 (330)
                      .+.+++++.. .+.|||++||+|.+.+|.++++||||||++|+++|.+++|+.+++|||||||||+||+.+|+|++++++
T Consensus       171 ~~~i~~~~~~-~~~v~Vv~Gfig~~~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~i  249 (819)
T PRK09436        171 TRRIAASFIP-ADHVILMPGFTAGNEKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSL  249 (819)
T ss_pred             HHHHHHHHhc-CCcEEEecCcccCCCCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEe
Confidence            8888888752 478999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeec
Q 020132          169 SYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEG  248 (330)
Q Consensus       169 s~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG  248 (330)
                      +|+|+.+++++|++++||+|+.+|+++|||++|+|+++|+.+||+|..... .      ..+.+++|+..+|+++|+++|
T Consensus       250 sy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~-~------~~~~Vk~It~~~dvalIsV~G  322 (819)
T PRK09436        250 SYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESD-E------DSLPVKGISNLNNMAMFNVSG  322 (819)
T ss_pred             cHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCCCCceEEEecCc-c------cccccceEEEeCCEEEEEEEc
Confidence            999999999999999999999999999999999999999999999976421 1      234699999999999999999


Q ss_pred             ccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHHhccCccccc
Q 020132          249 TGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQH  316 (330)
Q Consensus       249 ~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~~~~~~i~~~  316 (330)
                      .+|...+|+++++|+.|+++||+|+|++|++|+.+|||++++++.+++++.||+.|..++..+.+.++
T Consensus       323 ~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~~el~~~~~~~i  390 (819)
T PRK09436        323 PGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPL  390 (819)
T ss_pred             CCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHHHhccCCcceE
Confidence            99999999999999999999999999999999999999999999999999999999877765554443

>PRK09181 aspartate kinase; Validated

Probab=100.00  E-value=3.8e-55  Score=435.99  Aligned_cols=276  Identities=21%  Similarity=0.344  Sum_probs=231.1

Q ss_pred             HhhhcccccCCC------CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHH
Q 020132           17 RSTYNFLSNVDS------GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (330)
Q Consensus        17 ~~~~~~l~~~~~------~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~   90 (330)
                      +..++.+.+++.      ++++++.+|.++|+||+||+++|+.+|+++|++|.++|+..+..  +.       ++ .+.+
T Consensus       114 ~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~--~~-------~~-~~~~  183 (475)
T PRK09181        114 RACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDD--DD-------PL-TLDE  183 (475)
T ss_pred             HHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccC--Cc-------cc-chHH
Confidence            344455554432      57899999999999999999999999999999999998876532  11       11 1345


Q ss_pred             HHHHhhcc--CCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccch--hHhhhhh
Q 020132           91 RLEKWFSQ--SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVILR  166 (330)
Q Consensus        91 ~i~~~l~~--~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~--~~a~~i~  166 (330)
                      ++++.+..  ..+.|||++||+ .+.+|.++|||||||||+|+++|++|+|+++.|||||+ |||+|||++  |+|++++
T Consensus       184 ~i~~~l~~~~~~~~v~Vv~GF~-~~~~G~itTLGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~  261 (475)
T PRK09181        184 RIKKAFKDIDVTKELPIVTGYA-KCKEGLMRTFDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIG  261 (475)
T ss_pred             HHHHHHhhhccCCcEEEecCCc-CCCCCCEEecCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcC
Confidence            66666652  246899999996 57789999999999999999999999999999999996 999999999  6899999


Q ss_pred             hhhhHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeCCCC-C----------C---------Ccc--
Q 020132          167 TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV-D----------E---------NED--  224 (330)
Q Consensus       167 ~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~-~----------~---------~~~--  224 (330)
                      +|||+||.||+++|++||||+|++||++++||++|+|+++|+.+||+|.+... +          .         ..+  
T Consensus       262 ~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~~~GT~I~~~~~~~~~~ik~It~~~~~~~i~i~~~~~~~  341 (475)
T PRK09181        262 RTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEHPGTLITKDYVSEQPRVEIIAGSDKVFALEVFDQDMVG  341 (475)
T ss_pred             ccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCCCCCeEEecCcccccccceeEeccCCEEEEEEcCCCCCC
Confidence            99999999999999999999999999999999999999999999999965310 0          0         000  


Q ss_pred             --------------------------------cc-c----------ccCCc--ccceeecceeEEeeecccccCCCCchh
Q 020132          225 --------------------------------EQ-I----------IDSPV--KGFATIDNLALVNVEGTGMAGVPGTAN  259 (330)
Q Consensus       225 --------------------------------~~-~----------~~~~~--~~i~~~~nia~IsvvG~~~~~~~gv~a  259 (330)
                                                      .. .          ....+  ..+. .+++++|++||.+|. +||+++
T Consensus       342 ~~g~~~~if~~l~~~~i~v~~i~ss~~sis~~v~~~~~~~~~~~~~L~~~~~~~~i~-~~~~a~VsvVG~gm~-~~gv~a  419 (475)
T PRK09181        342 EDGYDLEILEILTRHKVSYISKATNANTITHYLWGSLKTLKRVIAELEKRYPNAEVT-VRKVAIVSAIGSNIA-VPGVLA  419 (475)
T ss_pred             cchHHHHHHHHHHHcCCeEEEEEecCcEEEEEEcCChHHHHHHHHHHHHhcCCceEE-ECCceEEEEeCCCCC-cccHHH
Confidence                                            00 0          00011  2344 389999999999995 899999


Q ss_pred             hhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          260 AIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       260 ~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      |+|++|++.||||.||+|++|+++|||+|+++|.++|+++||+.|+.
T Consensus       420 k~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~Av~~lH~~f~~  466 (475)
T PRK09181        420 KAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEKAICALHEALVE  466 (475)
T ss_pred             HHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999974

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=100.00  E-value=4.3e-53  Score=443.58  Aligned_cols=278  Identities=28%  Similarity=0.448  Sum_probs=249.6

Q ss_pred             HHhhhcccccCCCCCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHh
Q 020132           16 IRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKW   95 (330)
Q Consensus        16 i~~~~~~l~~~~~~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~   95 (330)
                      +...++.|+.++.++++++.+|.++|+||+||+++++.+|+++|++|.++++++++. +++. +.+.+++..+.++++++
T Consensus       102 i~~~~~~l~~~l~~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~-~~~~-~~~~i~~~~~~~~l~~~  179 (810)
T PRK09466        102 LISDLERLAALLDGGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLR-AERA-AQPQVDEGLSYPLLQQL  179 (810)
T ss_pred             HHHHHHHHHHHhhccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHhee-cCCC-CCcccchhhhHHHHHHH
Confidence            555677778888788899999999999999999999999999999999999999854 4333 24556666677888888


Q ss_pred             hccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhh
Q 020132           96 FSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE  175 (330)
Q Consensus        96 l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~  175 (330)
                      +....+.|||++||+|.+.+|.++||||||||++|+.+|++|+|+++.||||||||||+|||++|+|+++++|||+||.|
T Consensus       180 ~~~~~~~v~Vv~GF~g~~~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~e  259 (810)
T PRK09466        180 LAQHPGKRLVVTGFISRNEAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASE  259 (810)
T ss_pred             HhccCCeEEEeeCccccCCCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHH
Confidence            87445589999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccccccccccceeeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecccccCCC
Q 020132          176 MSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVP  255 (330)
Q Consensus       176 l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~  255 (330)
                      |+++|++||||+|++||++++||++|+|+++|+.+||+|.....        ....++.|+..+|+++|++.|.++.+.+
T Consensus       260 la~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~--------~~~~v~~It~~~~v~~i~i~~~~~~g~~  331 (810)
T PRK09466        260 LARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA--------SGTGARIVTSLDDVCLIELQVPASHDFK  331 (810)
T ss_pred             HHHcCccccCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc--------cccceeeeeccCCEEEEEEecCCcCCcc
Confidence            99999999999999999999999999999999999999975321        1234678889999999999998888889


Q ss_pred             CchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHH
Q 020132          256 GTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       256 gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      |+.+++|+.|+++||+++||+|++++.+++|.++.++.+++.+.|++.
T Consensus       332 g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~~~~~~l~~~  379 (810)
T PRK09466        332 LAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVADSALKLLDDA  379 (810)
T ss_pred             hHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999888888774

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-53  Score=400.37  Aligned_cols=293  Identities=28%  Similarity=0.414  Sum_probs=243.6

Q ss_pred             HHHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhH
Q 020132           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE   89 (330)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~   89 (330)
                      .+..+.+.|+++++     +|.+.+.+|+++|+||.+|+|+|+++|+.+|++|+.+|...++.++.+.+.+.+.- +.+.
T Consensus       166 v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~-~a~~  244 (559)
T KOG0456|consen  166 VIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDIL-EATY  244 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHH-HHHH
Confidence            34444555666665     48899999999999999999999999999999999999999877665444332221 1222


Q ss_pred             HHHHHhhc-c--CCCccEEEeeeee-cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhh
Q 020132           90 KRLEKWFS-Q--SPSNTIIATGFIA-STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (330)
Q Consensus        90 ~~i~~~l~-~--~~~~VpVv~G~i~-~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i  165 (330)
                      ..+-+++. .  ....|||++||+| ....|-.+++||||+|.+|+.+|++||++++.+|+|||||+|+||+++|.|+++
T Consensus       245 ~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~v  324 (559)
T KOG0456|consen  245 PAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLV  324 (559)
T ss_pred             HHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCcccc
Confidence            22223332 1  3568999999999 567788999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeCCCCC--------------------CCcc-
Q 020132          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD--------------------ENED-  224 (330)
Q Consensus       166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~--------------------~~~~-  224 (330)
                      |.++++||.||+|+|+.|+||-+++++++.+||++|+|..+|..+||.|.+...-                    .+.| 
T Consensus       325 p~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~~~GTvI~~d~~m~k~~~TsI~lK~nv~mldI~Str~l  404 (559)
T KOG0456|consen  325 PYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPTAPGTVITPDRDMSKAGLTSIVLKRNVTMLDIASTRML  404 (559)
T ss_pred             CccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCCCCceEeccchhhhhccceEEEEeccEEEEEecccchh
Confidence            9999999999999999999999999999999999999999999999999876310                    0000 


Q ss_pred             --------------------------------------------cc-------cccCCcccceeecceeEEeeecccccC
Q 020132          225 --------------------------------------------EQ-------IIDSPVKGFATIDNLALVNVEGTGMAG  253 (330)
Q Consensus       225 --------------------------------------------~~-------~~~~~~~~i~~~~nia~IsvvG~~~~~  253 (330)
                                                                  .|       .+-..+-.+.+.+..++||++|. |++
T Consensus       405 ~q~GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~l~~a~eeL~ki~~vdll~~~sIiSLiGn-vq~  483 (559)
T KOG0456|consen  405 GQHGFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGELDQAVEELEKIAVVDLLKGRSIISLIGN-VQN  483 (559)
T ss_pred             hhhhHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhhHHHHHHHHHHhhhhhhhccchHHhhhhh-hhh
Confidence                                                        00       00011233445568899999997 999


Q ss_pred             CCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHHhc
Q 020132          254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALN  309 (330)
Q Consensus       254 ~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~~~  309 (330)
                      ..|++.+.|..|+++||||.|||||+|+++|||+|++++.++++++||+.|++.+.
T Consensus       484 ss~i~~rmF~~l~e~giNvqMISQGAskvNIS~ivne~ea~k~v~~lH~~~~e~~~  539 (559)
T KOG0456|consen  484 SSGILERMFCVLAENGINVQMISQGASKVNISCIVNEKEAEKCVQALHKAFFETLD  539 (559)
T ss_pred             hhHHHHHHHHHHHhcCcceeeeccccccceEEEEEChHHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999987653

>PRK05925 aspartate kinase; Provisional

Probab=100.00  E-value=1e-52  Score=415.27  Aligned_cols=273  Identities=25%  Similarity=0.386  Sum_probs=239.3

Q ss_pred             CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEee
Q 020132           29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG  108 (330)
Q Consensus        29 ~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G  108 (330)
                      ++++++.+|.++|+||++||++++.+|+++|++|.++++++++ .++++|+++.++++.+.+.+..+.. ..+.|||++|
T Consensus        95 ~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i-~t~~~~~~a~~~~~~~~~~~~~~~~-~~~~v~Vv~G  172 (440)
T PRK05925         95 EEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQVI-LTDDQYLRAVPDLALMQTAWHELAL-QEDAIYIMQG  172 (440)
T ss_pred             CcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhE-eecCCccccccCHHHHHHHHHHhhc-cCCcEEEecC
Confidence            5667888999999999999999999999999999999999995 5666788888887777766666543 2568999999


Q ss_pred             eeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccc
Q 020132          109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT  188 (330)
Q Consensus       109 ~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a  188 (330)
                      |+|.+.+|.+++|||||||++|+++|.+++|+.+++|||||||||+||+.+|+|+++++++|+|+.+++++|++++||++
T Consensus       173 F~g~~~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~  252 (440)
T PRK05925        173 FIGANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPM  252 (440)
T ss_pred             cceeCCCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeecccceEEeeeccccCceeEeeCCC---CC----------CC-----------------------------c-cc
Q 020132          189 IIPVMRYDIPIVIRNIFNLSVPGIMICRPP---VD----------EN-----------------------------E-DE  225 (330)
Q Consensus       189 ~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~---~~----------~~-----------------------------~-~~  225 (330)
                      +++|+++|||++|.|+++|+.+||+|.+..   .+          .+                             . +.
T Consensus       253 ~~~a~~~~Ipi~I~~~~~p~~~GT~i~~~~~~~~~~~~ik~It~~~~~~~i~v~~~~~~~~~~~~if~~l~~~~I~vd~i  332 (440)
T PRK05925        253 LKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEVSYEPRIKALSLKQNQALWSVDYNSLGLVRLEDVLGILRSLGIVPGLV  332 (440)
T ss_pred             HHHHHHCCCcEEEecCCCCCCCccEEecCCccccCCCceEEEEEeCCEEEEEEecCCcchhHHHHHHHHHHHcCCcEEEE
Confidence            999999999999999999999999996532   00          00                             0 00


Q ss_pred             -----------c--cc-----------cCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCc
Q 020132          226 -----------Q--II-----------DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE  281 (330)
Q Consensus       226 -----------~--~~-----------~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se  281 (330)
                                 .  ..           .+.+..+.+.+|+++|++||.+|+. +++++++|++|++.||||.|++|+  +
T Consensus       333 ~s~~~sis~~i~~~~~~~~~~~~l~~~l~~~~~i~~~~~~a~VsvVG~gm~~-~~v~~~~~~aL~~~~Ini~~i~~s--~  409 (440)
T PRK05925        333 MAQNLGVYFTIDDDDISEEYPQHLTDALSAFGTVSCEGPLALITMIGAKLAS-WKVVRTFTEKLRGYQTPVFCWCQS--D  409 (440)
T ss_pred             eccCCEEEEEEechhccHHHHHHHHHHhcCCceEEEECCEEEEEEeCCCccc-ccHHHHHHHHHhhCCCCEEEEECC--C
Confidence                       0  00           0123457778899999999999997 789999999999999999999874  6


Q ss_pred             ceeeeecchhhHHHHHHHHHHHHHH
Q 020132          282 HSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       282 ~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      .+|||+|+++|.+++++.||++|+.
T Consensus       410 ~~is~vV~~~d~~~av~~LH~~f~~  434 (440)
T PRK05925        410 MALNLVVNEELAVAVTELLHNDYVK  434 (440)
T ss_pred             ceEEEEEehHHHHHHHHHHHHHHhc
Confidence            7999999999999999999999975

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=100.00  E-value=3.6e-51  Score=401.97  Aligned_cols=263  Identities=37%  Similarity=0.564  Sum_probs=243.3

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      ++..+|.++++||++|+++++.+|+++|++|.++++.+..+++++++++.+++...+.+.++++++  .+.|||++||+|
T Consensus        62 ~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVi~g~~~  139 (401)
T TIGR00656        62 TPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDIIATEERLLPLLE--EGIIVVVAGFQG  139 (401)
T ss_pred             ChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceEeeecchHHHHHHHHh--CCCEEEecCcce
Confidence            456689999999999999999999999999999999988777777776655655556678888888  789999999999


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccce
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (330)
                      .+.+|+++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+||.+|+++|++++||+|+.+
T Consensus       140 ~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~  219 (401)
T TIGR00656       140 ATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEP  219 (401)
T ss_pred             eCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCcc
Q 020132          192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN  271 (330)
Q Consensus       192 a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~  271 (330)
                      |++++||++|+|+++|+ +||+|.+...        ..+.+++++.++|+++|+++|.+|.+.+|+++++|+.|++++|+
T Consensus       220 a~~~~i~i~i~~~~~~~-~gT~I~~~~~--------~~~~v~~I~~~~~va~vsv~g~~~~~~~g~~~~if~~L~~~~I~  290 (401)
T TIGR00656       220 AMRSGVPIEVRSSFDPE-EGTLITNSME--------NPPLVKGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNIN  290 (401)
T ss_pred             HHHCCCeEEEEECCCCC-CCeEEEeCcc--------cCCceEEEEEECCEEEEEEecCCCCCCccHHHHHHHHHHHcCCc
Confidence            99999999999999998 8999976421        12368999999999999999999999999999999999999999


Q ss_pred             EEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          272 VIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       272 I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ++|++|+.|+.+|+|+++++|.+++++.||+.|.
T Consensus       291 i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~  324 (401)
T TIGR00656       291 VDLISQTPSETSISLTVDETDADEAVRALKDQSG  324 (401)
T ss_pred             EEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence            9999999899999999999999999999999773

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK08841 aspartate kinase; Validated

Probab=100.00  E-value=5.6e-51  Score=398.39  Aligned_cols=267  Identities=22%  Similarity=0.312  Sum_probs=230.0

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      +++.+|.++|+||++|+.+++.+|+++|++++++++.+..+++++.+++.+++.. ..+.++++++  .+.|||++||+|
T Consensus        62 ~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i~~~-~~~~i~~ll~--~~~vpVv~Gf~g  138 (392)
T PRK08841         62 TARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATIKHI-DTSTITELLE--QDQIVIVAGFQG  138 (392)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCceechh-hHHHHHHHHh--CCCEEEEeCCcc
Confidence            3456899999999999999999999999999999999986677666654444332 3478888887  789999999999


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccce
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (330)
                      .+++|.++|+||||||++|+.+|.+|+|+++++||||||||++||+++|+|+++++|+|+||.+|+++|++++||+|+++
T Consensus       139 ~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~  218 (392)
T PRK08841        139 RNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQH  218 (392)
T ss_pred             cCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccceEEeeeccccCceeEeeCCCCC---------CC---------cc----------------------------c
Q 020132          192 VMRYDIPIVIRNIFNLSVPGIMICRPPVD---------EN---------ED----------------------------E  225 (330)
Q Consensus       192 a~~~~i~v~i~~~~~~~~~GT~I~~~~~~---------~~---------~~----------------------------~  225 (330)
                      |+++|||++|+|++++ .+||+|......         .+         .+                            .
T Consensus       219 a~~~~Ipi~i~n~~~~-~~GT~I~~~~~~~~i~~i~~~~~~~~i~v~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~~~v~  297 (392)
T PRK08841        219 AWKHSVPLRVLSSFEV-GEGTLIKGEAGTQAVCGIALQRDLALIEVESESLPSLTKQCQMLGIEVWNVIEEADRAQIVIK  297 (392)
T ss_pred             HHHCCCeEEEEecCCC-CCCeEEEeccCCCcEEEEEEeCCeEEEEeccchHHHHHHHHHHcCCCEEEEEecCCcEEEEEC
Confidence            9999999999999986 579999643210         00         00                            0


Q ss_pred             c-----cccCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHH
Q 020132          226 Q-----IIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL  300 (330)
Q Consensus       226 ~-----~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~L  300 (330)
                      +     ........+...+|+++|++||.++   ||+++++|++|+++|||+.|++|  |+.+|||+|+++|.+++++.|
T Consensus       298 ~~~~~~~~~~~~~~i~~~~~~a~vsvVG~~~---~gv~~~~~~aL~~~~I~i~~i~~--s~~~is~vv~~~~~~~av~~l  372 (392)
T PRK08841        298 QDACAKLKLVFDDKIRNSESVSLLTLVGLEA---NGMVEHACNLLAQNGIDVRQCST--EPQSSMLVLDPANVDRAANIL  372 (392)
T ss_pred             HHHHHHHHHhCcccEEEeCCEEEEEEECCCC---hHHHHHHHHHHHhCCCCEEEEEC--CCcEEEEEEeHHHHHHHHHHH
Confidence            0     0000112466778999999999874   99999999999999999999985  689999999999999999999


Q ss_pred             HHHHHHH
Q 020132          301 ESKFREA  307 (330)
Q Consensus       301 h~~f~~~  307 (330)
                      |++|+..
T Consensus       373 H~~f~~~  379 (392)
T PRK08841        373 HKTYVTS  379 (392)
T ss_pred             HHHHcCC
Confidence            9999754

>TIGR00657 asp_kinases aspartate kinase

Probab=100.00  E-value=3.1e-50  Score=399.92  Aligned_cols=261  Identities=36%  Similarity=0.557  Sum_probs=238.8

Q ss_pred             ccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeec
Q 020132           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (330)
Q Consensus        33 ~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (330)
                      ++.+|.++|+||++|+++++.+|+++|++++++++.+..+++++++++..+......+.++.+++  .+.|||++||+|.
T Consensus       102 ~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~--~~~vpVv~G~~g~  179 (441)
T TIGR00657       102 PREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLE--EGIIPVVAGFQGA  179 (441)
T ss_pred             cchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHh--cCCEEEEeCcEee
Confidence            56789999999999999999999999999999999998888877776544334455688888887  7899999999999


Q ss_pred             CCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhccccccccccccee
Q 020132          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV  192 (330)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a  192 (330)
                      +.+|+++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|+++|++++||+|+++|
T Consensus       180 ~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~  259 (441)
T TIGR00657       180 TEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPA  259 (441)
T ss_pred             CCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccE
Q 020132          193 MRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANV  272 (330)
Q Consensus       193 ~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I  272 (330)
                      ++++||++|+|+++|..+||+|.+.....      ....++.++..+|+++|++.|.+|.. +|+++++|+.|+++||+|
T Consensus       260 ~~~~i~i~i~~~~~~~~~GT~I~~~~~~~------~~~~i~~It~~~~v~~Isv~g~~~~~-~g~la~if~~L~~~~I~I  332 (441)
T TIGR00657       260 MRAKIPIVVKSTFNPEAPGTLIVASTKEM------EEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGINV  332 (441)
T ss_pred             HHcCCeEEEecCCCCCCCceEEEeCCCcc------ccCccceEEEeCCEEEEEEECCCCCC-ccHHHHHHHHHHHcCCeE
Confidence            99999999999999988999998653211      12368999999999999999999988 999999999999999999


Q ss_pred             EEEeccCCcceeeeecchhhHHHHHHHHHH
Q 020132          273 IMISQASSEHSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       273 ~~Isq~~se~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      +|++|++|+.+|+|++++++.+++.+.|..
T Consensus       333 ~~i~q~~se~sIs~~I~~~~~~~a~~~L~~  362 (441)
T TIGR00657       333 DLITQSSSETSISFTVDKEDADQAKTLLKS  362 (441)
T ss_pred             EEEEecCCCceEEEEEEHHHHHHHHHHHHH
Confidence            999999999999999999999999888744

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=100.00  E-value=1.9e-48  Score=413.98  Aligned_cols=302  Identities=29%  Similarity=0.434  Sum_probs=245.6

Q ss_pred             HHHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCC-------CCC
Q 020132           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------QVD   82 (330)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g-------~~~   82 (330)
                      .+...++.|++++.     ++.+++.+|.++|+||++||.+++.+|+++|++|++++++++++++++.++       +..
T Consensus        93 ~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~  172 (861)
T PRK08961         93 VLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVS  172 (861)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccce
Confidence            34455666666653     466788999999999999999999999999999999999999776652111       112


Q ss_pred             CCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHh
Q 020132           83 PDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (330)
Q Consensus        83 ~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a  162 (330)
                      ++.......++.++. ..+.|||++||+|.+.+|.++||||||||++|+.+|.+|+|+++++|||||||||+||+.+|+|
T Consensus       173 ~~~~~~~~~~~~~~~-~~~~v~Vv~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a  251 (861)
T PRK08961        173 CQWQSDPALRERFAA-QPAQVLITQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDA  251 (861)
T ss_pred             ecHhhHHHHHHHHhc-cCCeEEEeCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCc
Confidence            222112234444443 2336999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeCCCCC----------C---------Cc
Q 020132          163 VILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVD----------E---------NE  223 (330)
Q Consensus       163 ~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~----------~---------~~  223 (330)
                      ++++++||+|+.+|+++|++++||+|+++|+++|||++|+|+++|+.+||+|.++...          .         ..
T Consensus       252 ~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~~~~~~v~~It~~~~v~lItv~~~~  331 (861)
T PRK08961        252 RLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDAEPVPGVKAISRKNGIVLVSMETIG  331 (861)
T ss_pred             eEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCCCCCCcceeEEEECCEEEEEEecCC
Confidence            9999999999999999999999999999999999999999999999899999754210          0         00


Q ss_pred             c----------------------------------cccc---------------cCCcccceeecceeEEeeecccccCC
Q 020132          224 D----------------------------------EQII---------------DSPVKGFATIDNLALVNVEGTGMAGV  254 (330)
Q Consensus       224 ~----------------------------------~~~~---------------~~~~~~i~~~~nia~IsvvG~~~~~~  254 (330)
                      +                                  ....               ...+..+.+.+++++|++||.+|+++
T Consensus       332 ~~~~~g~~a~if~~la~~~I~Vd~I~sse~sis~~i~~~~~~~~~~~~~~l~~~l~~~~~i~~~~~va~ISvVG~gm~~~  411 (861)
T PRK08961        332 MWQQVGFLADVFTLFKKHGLSVDLISSSETNVTVSLDPSENLVNTDVLAALSADLSQICRVKIIVPCAAVSLVGRGMRSL  411 (861)
T ss_pred             ccccccHHHHHHHHHHHcCCeEEEEEcCCCEEEEEEccccccchHHHHHHHHHHHhhcCcEEEeCCeEEEEEeCCCcccC
Confidence            0                                  0000               00123467778999999999999999


Q ss_pred             CCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHHhccCcccccCCCCCC
Q 020132          255 PGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQHSSSSWP  322 (330)
Q Consensus       255 ~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~~~~~~i~~~~~~~~~  322 (330)
                      +|+++++|++|++.  +|.|++|++|+++|||+|+++|.+++++.||+.|+..   .....+.+.+|-
T Consensus       412 ~gv~arif~aL~~~--~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~~f~~~---~~~~~~~~~~~~  474 (861)
T PRK08961        412 LHKLGPAWATFGAE--RVHLISQASNDLNLTFVIDESDADGLLPRLHAELIES---GAMPVVFGPRWR  474 (861)
T ss_pred             cChHHHHHHHHhhc--CeEEEECCCccccEEEEEeHHHHHHHHHHHHHHHhcC---CCCceeeCccHH
Confidence            99999999999986  5788999999999999999999999999999999754   233446666664

>PRK06635 aspartate kinase; Reviewed

Probab=100.00  E-value=2.2e-46  Score=368.38  Aligned_cols=266  Identities=31%  Similarity=0.493  Sum_probs=235.8

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      ++..++.++++||++|+++++.+|+++|++++++++.++.++++.++++.++.. ...+.++.+++  .+.|||++||+|
T Consensus        62 ~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~l~--~~~ipVi~g~~~  138 (404)
T PRK06635         62 DPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITD-IDPSRIREALD--EGDVVVVAGFQG  138 (404)
T ss_pred             CHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEeee-cCHHHHHHHHh--CCCEEEecCccE
Confidence            456678999999999999999999999999999999998666666665433321 22478888888  789999999999


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccce
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (330)
                      .+.+|+++++||||||++|+++|.+|+|+++++||||||||++||+.+++++++++++|+|+.+++++|++++||+|+.+
T Consensus       139 ~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~  218 (404)
T PRK06635        139 VDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEY  218 (404)
T ss_pred             eCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCcc
Q 020132          192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN  271 (330)
Q Consensus       192 a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~  271 (330)
                      +++++||++|.|++++ .+||.|.......     .....++.++..+++++|+++|  |.+.+|+++++|++|+++||+
T Consensus       219 ~~~~~i~~~i~~~~~~-~~gT~i~~~~~~~-----~~~~~i~~I~~~~~v~~Isv~g--~~~~~g~l~~i~~~L~~~~I~  290 (404)
T PRK06635        219 AKKYNVPLRVRSSFSD-NPGTLITGEEEEI-----MEQPVVTGIAFDKDEAKVTVVG--VPDKPGIAAQIFGALAEANIN  290 (404)
T ss_pred             HHHcCceEEEEcCCCC-CCCCEEeeCCccc-----cccCceEEEEecCCeEEEEECC--CCCCccHHHHHHHHHHHcCCe
Confidence            9999999999999987 5799997653200     0234688899999999999998  889999999999999999999


Q ss_pred             EEEEeccCCc---ceeeeecchhhHHHHHHHHHHHHHHHhc
Q 020132          272 VIMISQASSE---HSVCFAVPEKEVKAVAEALESKFREALN  309 (330)
Q Consensus       272 I~~Isq~~se---~sIS~vv~~~d~~~av~~Lh~~f~~~~~  309 (330)
                      |++++|+.++   .+++|++++++.+++++.||+ +..+++
T Consensus       291 i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~-~~~~~~  330 (404)
T PRK06635        291 VDMIVQNVSEDGKTDITFTVPRDDLEKALELLEE-VKDEIG  330 (404)
T ss_pred             EEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHH-HHHHcC
Confidence            9999998766   899999999999999999999 434443

>PRK08210 aspartate kinase I; Reviewed

Probab=100.00  E-value=9.5e-46  Score=363.88  Aligned_cols=262  Identities=27%  Similarity=0.454  Sum_probs=227.6

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      +++.++.++++||.+|+++++++|+++|++|.++++.+..+++++.++..++... ..+.++.+++  .+.|||++||+|
T Consensus        67 ~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~-~~~~l~~~l~--~~~vpVi~G~~~  143 (403)
T PRK08210         67 SKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEV-NPDRILEALE--EGDVVVVAGFQG  143 (403)
T ss_pred             ChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehh-hHHHHHHHHh--cCCEEEeeCeee
Confidence            4567788999999999999999999999999999999987777766654333221 2377888887  789999999999


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccce
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (330)
                      .+.+|+++++||||||++|+.+|.+|+|++++|||||||||++||+.+|+++++++++|+|+.+|+++|++++||+|+++
T Consensus       144 ~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~  223 (403)
T PRK08210        144 VTENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEI  223 (403)
T ss_pred             cCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCcc
Q 020132          192 VMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGAN  271 (330)
Q Consensus       192 a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~  271 (330)
                      |++++||++|+|++++ .+||+|.+........ +.....+++|+..+|+++|++.+..+  .+|+++++|+.|+++||+
T Consensus       224 ~~~~~i~i~i~~~~~~-~~gT~I~~~~~~~~~~-~~~~~~v~~It~~~~i~~isv~~~~~--~~g~la~If~~L~~~~I~  299 (403)
T PRK08210        224 AMQANIPLRIRSTYSD-SPGTLITSLGDAKGGI-DVEERLITGIAHVSNVTQIKVKAKEN--AYDLQQEVFKALAEAGIS  299 (403)
T ss_pred             HHHCCCeEEEEecCCC-cCCcEEEecCcccccc-ccccCceEEEEEcCCcEEEEEecCCC--cchHHHHHHHHHHHcCCe
Confidence            9999999999999985 3699998753211100 01234699999999999999987554  499999999999999999


Q ss_pred             EEEEeccCCcceeeeecchhhHHHHHHHHHH
Q 020132          272 VIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       272 I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      |+|++|+.  .+++|+++.++.+++.+.|++
T Consensus       300 i~~i~~~~--~~is~~v~~~~~~~a~~~l~~  328 (403)
T PRK08210        300 VDFINIFP--TEVVFTVSDEDSEKAKEILEN  328 (403)
T ss_pred             EEEEEecC--ceEEEEEcHHHHHHHHHHHHH
Confidence            99999873  479999999999999888777

>PRK07431 aspartate kinase; Provisional

Probab=100.00  E-value=5.4e-46  Score=381.37  Aligned_cols=279  Identities=28%  Similarity=0.428  Sum_probs=240.3

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      +...++.++++||++|+.+++.+|+++|++|+++++.++++++++.+|..++... ..+.++++++  .+.|||++||+|
T Consensus        62 ~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i~~~-~~~~l~~~l~--~g~vpVv~g~~g  138 (587)
T PRK07431         62 PRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEI-KTDRIQRHLD--AGKVVVVAGFQG  138 (587)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceeeeec-cHHHHHHHHh--CCCeEEecCCcC
Confidence            4456788999999999999999999999999999999987777665554333221 2267888887  789999999988


Q ss_pred             cCCC--CCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhccccccccccc
Q 020132          112 STPD--NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (330)
Q Consensus       112 ~~~~--g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~  189 (330)
                      .+.+  |+++++||||||++|+++|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|+++|+++|||+|+
T Consensus       139 ~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~  218 (587)
T PRK07431        139 ISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAV  218 (587)
T ss_pred             CCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHH
Confidence            7644  88999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecccceEEeeeccccCceeEeeCCCCC--------------------------------C----------------
Q 020132          190 IPVMRYDIPIVIRNIFNLSVPGIMICRPPVD--------------------------------E----------------  221 (330)
Q Consensus       190 ~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~--------------------------------~----------------  221 (330)
                      .+|+++|||++|+|++. +.+||+|.+....                                .                
T Consensus       219 ~~~~~~~i~i~i~~~~~-~~~GT~i~~~~~~~~~~~~~~~~~~i~gi~~~~~~a~itl~~~~~~~g~~a~if~~l~~~~I  297 (587)
T PRK07431        219 EIARNYGVPLVVRSSWS-DAPGTLVTSPPPRPRSLGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAAQGV  297 (587)
T ss_pred             HHHHHcCCcEEEecCCC-CCCCeEEEeCCcccccccchhcccccceEEEecCceEEEEecCCCcccHHHHHHHHHHHcCC
Confidence            99999999999999984 5579999643100                                0                


Q ss_pred             C-cc-cc---------------------------cccCCc--ccceeecceeEEeeecccccCCCCchhhhhhhhcccCc
Q 020132          222 N-ED-EQ---------------------------IIDSPV--KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA  270 (330)
Q Consensus       222 ~-~~-~~---------------------------~~~~~~--~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI  270 (330)
                      + .+ .|                           .....+  ..+++.+++++|+++|.+|+..+|+++|+|++|++++|
T Consensus       298 ~v~~i~qs~~~~~~~~isf~i~~~d~~~~~~~l~~l~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I  377 (587)
T PRK07431        298 NVDLIIQSIHEGNSNDIAFTVAENELKKAEAVAEAIAPALGGAEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGI  377 (587)
T ss_pred             cEEEEEeccCCCCCccEEEEEeHHHHHHHHHHHHHHHHHcCCCcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCC
Confidence            0 00 00                           000011  24777889999999999999999999999999999999


Q ss_pred             cEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHHhccCccccc
Q 020132          271 NVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQH  316 (330)
Q Consensus       271 ~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~~~~~~i~~~  316 (330)
                      +|.||+  +|+.+|||+|+++|.+++++.||++|+.++....|.|+
T Consensus       378 ~i~~i~--sSe~~Is~vv~~~d~~~av~~Lh~~f~~~~~~~~~~~~  421 (587)
T PRK07431        378 NIRMIS--TSEVKVSCVIDAEDGDKALRAVCEAFELEDSQIEINPT  421 (587)
T ss_pred             cEEEEE--cCCCEEEEEEcHHHHHHHHHHHHHHhccCCcccccCcc
Confidence            999998  78999999999999999999999999999999999998

>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species

Probab=100.00  E-value=1.2e-45  Score=346.58  Aligned_cols=193  Identities=28%  Similarity=0.468  Sum_probs=175.6

Q ss_pred             hhcccccCCCCCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhcc
Q 020132           19 TYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQ   98 (330)
Q Consensus        19 ~~~~l~~~~~~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~   98 (330)
                      .++.+.+++. .++++.+|.++|+||++|+++++.+|+++|+++.+++++++++.+++.++++.+... +.+.+.++++ 
T Consensus        96 ~~~~l~~~~~-~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~-~~~~~~~~~~-  172 (288)
T cd04245          96 ILENLANLDY-ANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPE-SYQKIKKLRD-  172 (288)
T ss_pred             HHHHHHHhhc-cCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchh-hHHHHHHHHh-
Confidence            3444444432 356788999999999999999999999999999999999997777888887776553 6677888887 


Q ss_pred             CCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh
Q 020132           99 SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY  178 (330)
Q Consensus        99 ~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~  178 (330)
                       .+.|||++||+|.+.+|++++|||||||++|+++|.+|+|+++.+|||||||||+||+++|+|+++++|||+||.+|++
T Consensus       173 -~~~v~Vv~Gf~g~~~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~  251 (288)
T cd04245         173 -SDEKLVIPGFYGYSKNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSY  251 (288)
T ss_pred             -CCCEEEEeCccccCCCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHH
Confidence             5789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccccccceeeecccceEEeeeccccCceeEee
Q 020132          179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       179 ~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~  215 (330)
                      +|+++|||+|+.||++++||++|+|+++|+.+||+|.
T Consensus       252 ~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~~~GT~I~  288 (288)
T cd04245         252 AGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLIV  288 (288)
T ss_pred             CCCcccCHHHHHHHHHCCCcEEEeeCCCCCCCCceeC
Confidence            9999999999999999999999999999999999984

Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.

>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH)

Probab=100.00  E-value=5.6e-45  Score=343.50  Aligned_cols=198  Identities=48%  Similarity=0.808  Sum_probs=180.1

Q ss_pred             HHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHH
Q 020132           16 IRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (330)
Q Consensus        16 i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~   90 (330)
                      |...++.|+.++.     ++++++.+|.++|+||+||+++++.+|+++|++|.++++++++ .+++.++++.++.+.+.+
T Consensus        92 i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i-~t~~~~~~a~~~~~~~~~  170 (294)
T cd04257          92 LGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARELI-VTDGGYLNAVVDIELSKE  170 (294)
T ss_pred             HHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHee-EecCCCCceEechHhhHH
Confidence            3444555555544     4678899999999999999999999999999999999999975 456667778888777788


Q ss_pred             HHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh
Q 020132           91 RLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY  170 (330)
Q Consensus        91 ~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~  170 (330)
                      .+++++... +.|||++||+|.+.+|.++++||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|
T Consensus       171 ~l~~~~~~~-~~v~Vv~Gfig~~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~  249 (294)
T cd04257         171 RIKAWFSSN-GKVIVVTGFIASNPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSY  249 (294)
T ss_pred             HHHHHHhcC-CCEEEecCcccCCCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCH
Confidence            999888732 7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEee
Q 020132          171 QEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       171 ~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~  215 (330)
                      +|+.+++++|++++||+|+.+|+++|||++|+|+++|+.+||+|+
T Consensus       250 ~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~~~GT~I~  294 (294)
T cd04257         250 QEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLIS  294 (294)
T ss_pred             HHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCCCCCCEeC
Confidence            999999999999999999999999999999999999999999984

These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act

>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=100.00  E-value=5.9e-45  Score=342.46  Aligned_cols=199  Identities=32%  Similarity=0.585  Sum_probs=180.9

Q ss_pred             HHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHH
Q 020132           16 IRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (330)
Q Consensus        16 i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~   90 (330)
                      |...++.|++++.     ++++++.+|.++|+||+|||++++.+|+++|++|.++++++++ .+++.+++++++.+.+.+
T Consensus        88 i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i-~t~~~~~~a~~~~~~~~~  166 (292)
T cd04258          88 LEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVL-RTDSRFGRAAPDLNALAE  166 (292)
T ss_pred             HHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeE-EecCCCccccccHHHHHH
Confidence            4455666666664     4668889999999999999999999999999999999999995 466778888898888777


Q ss_pred             HHHHhhcc-CCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhh
Q 020132           91 RLEKWFSQ-SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (330)
Q Consensus        91 ~i~~~l~~-~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is  169 (330)
                      .++.++.. ..+.|||++||+|.+.+|+++||||||||++|+++|.+|+|+++++||||+|||++||+++|+|+++++++
T Consensus       167 ~~~~~~~~~~~~~v~Vv~Gf~g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~is  246 (292)
T cd04258         167 LAAKLLKPLLAGTVVVTQGFIGSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEIS  246 (292)
T ss_pred             HHHHHHHHhhcCCEEEECCccccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeC
Confidence            77776553 25689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEee
Q 020132          170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       170 ~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~  215 (330)
                      |+||.+|+++|++++||+|+.++++++||++|+|+++|+.+||+|.
T Consensus       247 y~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~~~GT~I~  292 (292)
T cd04258         247 FAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLIT  292 (292)
T ss_pred             HHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCCceeC
Confidence            9999999999999999999999999999999999999999999984

AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.

>PRK08373 aspartate kinase; Validated

Probab=100.00  E-value=5.1e-44  Score=342.03  Aligned_cols=240  Identities=28%  Similarity=0.403  Sum_probs=206.1

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhH---HHHHHhhccCCCccEEEee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE---KRLEKWFSQSPSNTIIATG  108 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~---~~i~~~l~~~~~~VpVv~G  108 (330)
                      +++.+|.++|+||++|+.+++.+|+++|++|.++++++++ .+++.+++++++...+.   +.+..+++  .+.|||++|
T Consensus        98 ~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i-~t~~~~~~a~i~~~~s~~~~~~l~~~l~--~g~VpVv~G  174 (341)
T PRK08373         98 SEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEIL-EAKGSFGNAFIDIKKSKRNVKILYELLE--RGRVPVVPG  174 (341)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHhe-eecCCccceeechhhhhhhHHHHHHHHh--CCcEEEEeC
Confidence            4677899999999999999999999999999999999984 56777777777664443   55666666  789999999


Q ss_pred             eeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccc
Q 020132          109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT  188 (330)
Q Consensus       109 ~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a  188 (330)
                      |++ +.+|.++++||||||++|+.+|++|+|+++++||||||||++||+.+|+|++++++||+||.+++++|++++||+|
T Consensus       175 f~g-~~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~a  253 (341)
T PRK08373        175 FIG-NLNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKA  253 (341)
T ss_pred             Ccc-CCCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHH
Confidence            998 8899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecccccCCCCchhhhhhhhccc
Q 020132          189 IIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDV  268 (330)
Q Consensus       189 ~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~  268 (330)
                      +++|++ +||++|+|++++. +||+|.+....        ...++.+ +..|.|.|+++|.  .+.+++           
T Consensus       254 i~~a~~-~Ipi~v~~t~~~~-~GT~I~~~~~~--------~~~~~~~-~~~~~~~i~~~~~--~~~~~~-----------  309 (341)
T PRK08373        254 IEPVKG-KIPIIFGRTRDWR-MGTLVSNESSG--------MPILVHK-VGEEHAEILVVGV--EEEIGY-----------  309 (341)
T ss_pred             HHHHHc-CCcEEEecCCCCC-CCcEEecCCCC--------CceEEEE-ecCCEEEEEEecc--CCCCCC-----------
Confidence            999999 9999999999984 89999765321        1346666 7889999999973  333332           


Q ss_pred             CccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          269 GANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       269 gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                        .+  +.  ..+..+++.|++++..++++.+|+..+
T Consensus       310 --~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  340 (341)
T PRK08373        310 --PV--YE--EGEFWFKIKVPKEELIEALREIHRRVF  340 (341)
T ss_pred             --Cc--ee--cCCceEEEecCHHHHHHHHHHHHHHhh
Confidence              21  11  236778999999999999999999753

>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH)

Probab=100.00  E-value=9.2e-45  Score=341.89  Aligned_cols=198  Identities=43%  Similarity=0.751  Sum_probs=180.4

Q ss_pred             HHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHH
Q 020132           16 IRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (330)
Q Consensus        16 i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~   90 (330)
                      +...++.|+.++.     ++++++.+|.++|+||+||+++++.+|+++|++|.++++++++. +++.++++.+++..+.+
T Consensus        91 i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~-t~~~~~~~~~~~~~s~~  169 (293)
T cd04243          91 LDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLL-TDDGFLNAVVDLKLSKE  169 (293)
T ss_pred             HHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEE-ecCCCCcchhhhHHHHH
Confidence            4445566665553     46788999999999999999999999999999999999999854 55667777888877788


Q ss_pred             HHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh
Q 020132           91 RLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY  170 (330)
Q Consensus        91 ~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~  170 (330)
                      .++.++... +.|||++||+|.+.+|+++++||||||++|+++|.+++|+++++||||||||++||+.+|+|+++++++|
T Consensus       170 ~~~~~~~~~-~~v~Vv~Gfig~~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~  248 (293)
T cd04243         170 RLAQLLAEH-GKVVVTQGFIASNEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSY  248 (293)
T ss_pred             HHHHHHhcC-CCEEEecCccccCCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCH
Confidence            899888721 7999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEee
Q 020132          171 QEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       171 ~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~  215 (330)
                      +|+.+|+++|++++||+|+.+|+++|||++|+|+++|+.+||+|+
T Consensus       249 ~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~~~GT~I~  293 (293)
T cd04243         249 DEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLIS  293 (293)
T ss_pred             HHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEeC
Confidence            999999999999999999999999999999999999999999984

These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-

>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains

Probab=100.00  E-value=2e-44  Score=340.44  Aligned_cols=200  Identities=30%  Similarity=0.521  Sum_probs=168.9

Q ss_pred             HHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCC-chhhH
Q 020132           16 IRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD-FSESE   89 (330)
Q Consensus        16 i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~-~~~~~   89 (330)
                      ++..++.|++++.     ++++++.+|.++|+||+||+++++.+|+++|+++.++++++++. ++......... .....
T Consensus       100 i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~-~~~~~~~~~~~~~~~~~  178 (306)
T cd04247         100 INKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVD-LDFSIEALDQTFYDELA  178 (306)
T ss_pred             HHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHhee-cCCCccccccchhHHHH
Confidence            3344555555543     46788899999999999999999999999999999999999864 43321011111 12333


Q ss_pred             HHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is  169 (330)
                      +.+...+....+.|||++||+|.+.+|+++||||||||++|+++|..|+|+++++|||||||||+||+++|+|+++++|+
T Consensus       179 ~~~~~~~~~~~~~v~Vv~GFig~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is  258 (306)
T cd04247         179 QVLGEKITACENRVPVVTGFFGNVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSIT  258 (306)
T ss_pred             HHHHHHhhccCCceEEeeccEecCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccC
Confidence            33444443235689999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeC
Q 020132          170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICR  216 (330)
Q Consensus       170 ~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~  216 (330)
                      |+||.+|+++|++|+||+|+.||++++||++|+|+++|+.+||+|.+
T Consensus       259 ~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~~~GT~I~~  305 (306)
T cd04247         259 PEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVIYP  305 (306)
T ss_pred             HHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCCCCCcEEcC
Confidence            99999999999999999999999999999999999999999999965

Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.

>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants

Probab=100.00  E-value=4.8e-44  Score=338.09  Aligned_cols=199  Identities=41%  Similarity=0.639  Sum_probs=176.4

Q ss_pred             HHHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCC---ch
Q 020132           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPD---FS   86 (330)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~---~~   86 (330)
                      .|...++.|++++.     ++.+++.+|.++|+||+||+++++.+|+++|++|.+++++++++++++.+++..++   ..
T Consensus        92 ~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~  171 (298)
T cd04244          92 IIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYE  171 (298)
T ss_pred             HHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHH
Confidence            44555666666654     35678899999999999999999999999999999999999977777776654443   33


Q ss_pred             hhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhh
Q 020132           87 ESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR  166 (330)
Q Consensus        87 ~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~  166 (330)
                      .....+..+++  .+.|||++||+|.+.+|+++++||||||++|+.+|.+|+|+++++||||||||++||+.+|++++++
T Consensus       172 ~i~~~l~~ll~--~~~vpVv~Gfig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~  249 (298)
T cd04244         172 RVRKRLLPMLE--DGKIPVVTGFIGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIP  249 (298)
T ss_pred             HHHHHHHHHhh--cCCEEEEeCccccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcC
Confidence            33444555555  6899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEee
Q 020132          167 TLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       167 ~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~  215 (330)
                      +++|+||.+|+++|++++||+|+.+|++++||++|+|+++|+.+||+|.
T Consensus       250 ~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~~~GT~I~  298 (298)
T cd04244         250 RLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT  298 (298)
T ss_pred             ccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCCCCCCEeC
Confidence            9999999999999999999999999999999999999999999999984

The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.

>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria

Probab=100.00  E-value=8.3e-44  Score=335.54  Aligned_cols=198  Identities=34%  Similarity=0.530  Sum_probs=175.0

Q ss_pred             HHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCC-------CCC
Q 020132           16 IRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-------VDP   83 (330)
Q Consensus        16 i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-------~~~   83 (330)
                      |...++.|++++.     ++++++.+|.++|+||+|||++++.+|++.|++|.+++++++++++ +.+|+       +.+
T Consensus        86 i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~-~~~~~~~~~~~~a~v  164 (295)
T cd04259          86 LANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTAT-PTLGGETMNYLSARC  164 (295)
T ss_pred             HHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeec-cccccccccccccee
Confidence            4444555555543     4678889999999999999999999999999999999999997654 34443       333


Q ss_pred             CchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhh
Q 020132           84 DFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV  163 (330)
Q Consensus        84 ~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~  163 (330)
                      +...+..++++.+.. .+.|||++||+|.+.+|.++||||||||++|+.+|.+|+|+++++||||||||++||+.+|+|+
T Consensus       165 ~~~~~~~~l~~~l~~-~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~  243 (295)
T cd04259         165 ESEYADALLQKRLAD-GAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHAR  243 (295)
T ss_pred             hhhhhHHHHHHHHhc-CCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCe
Confidence            344566788887762 2579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEee
Q 020132          164 ILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       164 ~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~  215 (330)
                      ++++++|+||.+++++|++++||+|+++|++++||++|+|+++|+.+||+|+
T Consensus       244 ~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~~~GT~I~  295 (295)
T cd04259         244 LLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTLIT  295 (295)
T ss_pred             EeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCCCCCcEeC
Confidence            9999999999999999999999999999999999999999999999999984

Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.

>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria

Probab=100.00  E-value=3.3e-41  Score=315.41  Aligned_cols=177  Identities=19%  Similarity=0.305  Sum_probs=153.8

Q ss_pred             CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEee
Q 020132           29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG  108 (330)
Q Consensus        29 ~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G  108 (330)
                      ++++++.+|.++|+||++||.+++.+|++.|++|+++|+..+..  .+.+   . +...+.+.+..+ + ..+.|||++|
T Consensus       126 ~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~--~~~~---t-~~~~i~~~~~~~-~-~~~~v~IvtG  197 (304)
T cd04248         126 AEHLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRD--SGDM---T-LDERISEAFRDI-D-PRDELPIVTG  197 (304)
T ss_pred             hhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccc--cCCC---C-cHHHHHHHHHhh-c-cCCcEEEeCC
Confidence            46788999999999999999999999999999999998876632  1111   1 122333333332 1 2568999999


Q ss_pred             eeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccch--hHhhhhhhhhhHHhhhhhhcccccccc
Q 020132          109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKV--SEAVILRTLSYQEAWEMSYFGANVLHP  186 (330)
Q Consensus       109 ~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~--~~a~~i~~is~~e~~~l~~~g~~v~~p  186 (330)
                      | +.+.+|.++||||||||++|+.+|++|+|++++|||||+ |||+||+++  ++|++++++||+||.||+++|++++||
T Consensus       198 F-~~~~~G~itTLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP  275 (304)
T cd04248         198 Y-AKCAEGLMREFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHP  275 (304)
T ss_pred             c-cCCCCCCEEEcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCH
Confidence            9 567799999999999999999999999999999999996 999999999  589999999999999999999999999


Q ss_pred             cccceeeecccceEEeeeccccCceeEee
Q 020132          187 RTIIPVMRYDIPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       187 ~a~~~a~~~~i~v~i~~~~~~~~~GT~I~  215 (330)
                      +|++||++++||++|+|+++|+.+||+|+
T Consensus       276 ~ai~pa~~~~IPi~Vkntf~P~~~GTlIt  304 (304)
T cd04248         276 KAAKGLRQAGIPLRVKNTFEPDHPGTLIT  304 (304)
T ss_pred             HHHHHHHHcCCeEEEecCCCCCCCCceeC
Confidence            99999999999999999999999999984

Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.

>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative

Probab=100.00  E-value=2.5e-40  Score=314.93  Aligned_cols=230  Identities=26%  Similarity=0.408  Sum_probs=190.5

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHH---HHHHhhccCCCccEEEee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK---RLEKWFSQSPSNTIIATG  108 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~---~i~~~l~~~~~~VpVv~G  108 (330)
                      ++..+|+++|+||++|+++++.     |+++.++++++++ .+++.++++.+++..+..   .+.++++  .+.|||++|
T Consensus        93 ~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~i-~t~~~~~~a~~~~~~~~~~~~~l~~~l~--~g~IpVv~G  164 (327)
T TIGR02078        93 KEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIF-FAKGDFGNAFIDIKKSKRNAKILYEVLE--SGKIPVIPG  164 (327)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHHh-ccCCcCCceeechhhhHhhHHHHHHHHh--CCcEEEEeC
Confidence            4567899999999999999987     8999999999985 466777887788655543   4444555  789999999


Q ss_pred             eeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccc
Q 020132          109 FIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT  188 (330)
Q Consensus       109 ~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a  188 (330)
                      |++ +.+|.++++||||||++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+||.+++++|++++||+|
T Consensus       165 f~~-~~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a  243 (327)
T TIGR02078       165 FYG-NLNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKA  243 (327)
T ss_pred             Ccc-CCCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHH
Confidence            998 8899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceeeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecc-eeEEeeecccccCCCCchhhhhhhhcc
Q 020132          189 IIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDN-LALVNVEGTGMAGVPGTANAIFGAVKD  267 (330)
Q Consensus       189 ~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~n-ia~IsvvG~~~~~~~gv~a~if~~L~~  267 (330)
                      +++|+++|||++|+|+++|. +||+|+.....         .++  +++... ++.|++-                    
T Consensus       244 ~~~a~~~~Ipi~I~~t~~~~-~GT~I~~~~~~---------~~~--i~~~~~~i~~v~~~--------------------  291 (327)
T TIGR02078       244 ADLAKEYKIPVLFGRTRDWR-MGTLISNRSSG---------MPL--MVYKDGELLVVNVR--------------------  291 (327)
T ss_pred             HHHHHHCCCeEEEEeCCCcC-CCcEEecCCCC---------CcE--EEEccCcEEEEEEe--------------------
Confidence            99999999999999999986 79999765321         112  444554 5555441                    


Q ss_pred             cCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHH
Q 020132          268 VGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       268 ~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      ..++...+.  ..+..+++.|++++..++++.+|+..
T Consensus       292 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (327)
T TIGR02078       292 REISYPVIE--EGEFWKKYKVPKEDGIEIIRELHRKV  326 (327)
T ss_pred             ecccccccc--cCCceEEEecCHHHHHHHHHHHHhhh
Confidence            111111222  23667899999999999999999864

This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.

>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences

Probab=100.00  E-value=1.4e-36  Score=279.21  Aligned_cols=180  Identities=33%  Similarity=0.481  Sum_probs=163.3

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      +.+..+.++++||++++.++++.|+++|++++++++.++.+++.++++..++.. ...+.++++++  .+.|||++||++
T Consensus        60 ~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i~~-~~~~~l~~ll~--~~~ipVi~G~~~  136 (239)
T cd04261          60 PARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIID-IDPDRIRELLE--EGDVVIVAGFQG  136 (239)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcceech-hhHHHHHHHHH--cCCeEEEcCccc
Confidence            455678889999999999999999999999999999998666655554333322 12378888888  789999999999


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccce
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (330)
                      .+++|.++++|||++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+++++|++++||+|+++
T Consensus       137 ~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~  216 (239)
T cd04261         137 INEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVEL  216 (239)
T ss_pred             cCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccceEEeeeccccCceeEee
Q 020132          192 VMRYDIPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       192 a~~~~i~v~i~~~~~~~~~GT~I~  215 (330)
                      |.++|||++|.|+++|+ +||+|.
T Consensus       217 ~~~~~i~i~I~n~~~~~-~gt~i~  239 (239)
T cd04261         217 AKKYGVPLRVLSSFSEE-PGTLIT  239 (239)
T ss_pred             HHHcCCeEEEecCCCCC-CCcEeC
Confidence            99999999999999999 999984

In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and

>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;)

Probab=100.00  E-value=1.4e-36  Score=277.24  Aligned_cols=175  Identities=42%  Similarity=0.698  Sum_probs=160.3

Q ss_pred             eeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCC-CccEEEeeeeecCCCC
Q 020132           38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSP-SNTIIATGFIASTPDN  116 (330)
Q Consensus        38 ~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~-~~VpVv~G~i~~~~~g  116 (330)
                      .++|.||.+|+++++++|+++|+++.++++.++++++++. +..........+.++++++  . +.|||++||++.+++|
T Consensus        52 ~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~--~~~~vpVv~g~i~~~~~g  128 (227)
T cd04234          52 LLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDN-HGAARIIEISYERLKELLA--EIGKVPVVTGFIGRNEDG  128 (227)
T ss_pred             HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCc-cchhhHHHHHHHHHHHHHh--hCCCEEEecCceecCCCC
Confidence            6778999999999999999999999999999988776543 2222334445688888888  7 8999999999999999


Q ss_pred             CcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecc
Q 020132          117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYD  196 (330)
Q Consensus       117 ~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~  196 (330)
                      .+++++|||+|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+++..|+++|||+|+++|.+++
T Consensus       129 ~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~  208 (227)
T cd04234         129 EITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKAN  208 (227)
T ss_pred             CEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cceEEeeeccccCceeEee
Q 020132          197 IPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       197 i~v~i~~~~~~~~~GT~I~  215 (330)
                      ||++|+|+++|..+||+|+
T Consensus       209 i~i~i~~~~~~~~~gT~I~  227 (227)
T cd04234         209 IPIRVKNTFNPEAPGTLIT  227 (227)
T ss_pred             CeEEEEeCCCCCCCCCEeC
Confidence            9999999999998999984

AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd

>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species

Probab=100.00  E-value=3.8e-36  Score=277.07  Aligned_cols=181  Identities=34%  Similarity=0.512  Sum_probs=163.3

Q ss_pred             ccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeee
Q 020132           31 ATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (330)
Q Consensus        31 ~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (330)
                      .++..++.++++||.+++.+++++|+++|++|..+++.++++++.+.++..++... ..+.++++++  .+.|||++||+
T Consensus        64 ~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~-~~~~l~~ll~--~g~VPVv~g~~  140 (244)
T cd04260          64 ISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKV-NPKKILSALK--EGDVVVVAGFQ  140 (244)
T ss_pred             CCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeecc-CHHHHHHHHh--CCCEEEecCCc
Confidence            34566788999999999999999999999999999999987777666643332221 1266888887  78999999999


Q ss_pred             ecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccc
Q 020132          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (330)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~  190 (330)
                      +.+++|++++++|||+|++|+.+|.+|+|+++++||||||||++||+.+++++++++|+++|+.++++.|++++||+|++
T Consensus       141 ~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~  220 (244)
T cd04260         141 GVTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVE  220 (244)
T ss_pred             ccCCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccceEEeeeccccCceeEee
Q 020132          191 PVMRYDIPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       191 ~a~~~~i~v~i~~~~~~~~~GT~I~  215 (330)
                      +|+++++|++|.|+++|+ +||+|+
T Consensus       221 ~~~~~~i~v~I~~~~~~~-~gt~i~  244 (244)
T cd04260         221 IAMQANIPIRIRSTMSEN-PGTLIT  244 (244)
T ss_pred             HHHHcCCeEEEecCCCCC-CCCEeC
Confidence            999999999999999988 899984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet

>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes

Probab=100.00  E-value=4.7e-36  Score=275.58  Aligned_cols=180  Identities=33%  Similarity=0.513  Sum_probs=163.1

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      +...++.+++.||++++.++++.|+++|++|.++++.++.+.+..++++.++.. ...+.++++++  .+.|||++||++
T Consensus        60 ~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~~~-~~~~~l~~ll~--~g~ipVi~g~~~  136 (239)
T cd04246          60 SPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIID-IDPKRILEALE--EGDVVVVAGFQG  136 (239)
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceeech-hhHHHHHHHHh--cCCEEEEcCccc
Confidence            455678899999999999999999999999999999997666655554433322 23478888888  789999999999


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccce
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (330)
                      .+++|.+++++|||+|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.++++.|++++||+|+++
T Consensus       137 ~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~  216 (239)
T cd04246         137 VNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVEL  216 (239)
T ss_pred             cCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccceEEeeeccccCceeEee
Q 020132          192 VMRYDIPIVIRNIFNLSVPGIMIC  215 (330)
Q Consensus       192 a~~~~i~v~i~~~~~~~~~GT~I~  215 (330)
                      |+++|||++|+|+++|+ +||+|+
T Consensus       217 a~~~gi~i~i~~~~~~~-~gt~i~  239 (239)
T cd04246         217 AKKYNVPLRVRSSFSEN-PGTLIT  239 (239)
T ss_pred             HHHCCCeEEEecCCCCC-CCcEeC
Confidence            99999999999999998 999984

In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati

>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK)

Probab=99.95  E-value=5.4e-29  Score=228.81  Aligned_cols=179  Identities=37%  Similarity=0.503  Sum_probs=155.0

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      +....+.+++.|+.++++++++.|.++|+++.++++.++...+.+ ++..........+.++++++  .+.|||++||.+
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~-~~~~g~~~~~~~~~l~~~l~--~~~ipVv~g~~~  138 (248)
T cd02115          62 TDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPN-QGHVGKITKVSTDRLKSLLE--NGILPILSGFGG  138 (248)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeCC-CCCcccceeeCHHHHHHHHh--CCcEEEecCeEe
Confidence            455677899999999999999999999999999999998766543 33322222234488888888  789999999988


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccce
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (330)
                      .+.+ ....++|+++|++|+.+|.+|+|++++|||||+|||++||+++++++++++++++|+.+++..|..++||+++.+
T Consensus       139 ~~~~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~  217 (248)
T cd02115         139 TDEK-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADP  217 (248)
T ss_pred             ccCC-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHH
Confidence            7765 677789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecccceEEeeecc--------ccCceeEe
Q 020132          192 VMRYDIPIVIRNIFN--------LSVPGIMI  214 (330)
Q Consensus       192 a~~~~i~v~i~~~~~--------~~~~GT~I  214 (330)
                      +.+++++++|.|+.+        ++..||+|
T Consensus       218 ~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~I  248 (248)
T cd02115         218 AARAGIPVRIANTENPGALALFTPDGGGTLI  248 (248)
T ss_pred             HHHcCCcEEEEeCCCcccccccCCCCCCCCC
Confidence            999999999999887        45567654

The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.

>PRK14558 pyrH uridylate kinase; Provisional

Probab=99.91  E-value=4.6e-25  Score=201.80  Aligned_cols=159  Identities=23%  Similarity=0.347  Sum_probs=130.5

Q ss_pred             cccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecC
Q 020132           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (330)
Q Consensus        34 ~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (330)
                      ...|.+...||+||+.+++.+|.++|++++++++.  .  ....     + .....+.+..+++  .+.|||++|+.+  
T Consensus        63 ~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~~--~--~~~~-----~-~~~~~~~i~~ll~--~g~vpV~~G~~~--  128 (231)
T PRK14558         63 TRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQI--V--NLPS-----V-EPINYDDIELYFR--AGYIVIFAGGTS--  128 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccc--c--ccch-----h-hhhhHHHHHHHHH--CCCEEEEECCCC--
Confidence            34566767799999999999999999999999862  1  1111     1 1223478888888  789999999853  


Q ss_pred             CCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceee
Q 020132          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM  193 (330)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~  193 (330)
                       ...      +.+|++|+++|.+++|+.+++||||||||++||+++|+|+++++++++|+.++   |+++|||+|+++|.
T Consensus       129 -~~~------~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~  198 (231)
T PRK14558        129 -NPF------FTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEAFSICK  198 (231)
T ss_pred             -CCC------CCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---CcccccHHHHHHHH
Confidence             111      23599999999999999999999999999999999999999999999998876   78999999999999


Q ss_pred             ecccceEEeeecccc---------CceeEeeC
Q 020132          194 RYDIPIVIRNIFNLS---------VPGIMICR  216 (330)
Q Consensus       194 ~~~i~v~i~~~~~~~---------~~GT~I~~  216 (330)
                      ++|+|++|+|+++|+         ..||+|.+
T Consensus       199 ~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~  230 (231)
T PRK14558        199 KYGITILVINFFEPGNLLKALKGENVGTLVVP  230 (231)
T ss_pred             HCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence            999999999987652         45787754

>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families

Probab=99.89  E-value=6.1e-25  Score=201.19  Aligned_cols=148  Identities=32%  Similarity=0.451  Sum_probs=123.4

Q ss_pred             ceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCC
Q 020132           37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN  116 (330)
Q Consensus        37 ~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g  116 (330)
                      +.+++.|+.+++..+...+.+.|+.+...++.                 ....+.++++++  .+.|||++||.+.+.+|
T Consensus        89 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~i~~~l~--~~~ipVv~g~~~~~~~g  149 (242)
T PF00696_consen   89 DEIVSAGERLGAHAVGLSLSDGGISAAKRDAR-----------------EVDKEAIRELLE--QGIIPVVSGFAGIDDDG  149 (242)
T ss_dssp             HHHHHHHHHCTHHEEEHHHTGGTEEEEEEESS-----------------EEHHHHHHHHHH--TTSEEEEESEEEEETTS
T ss_pred             HHHHHhhhhhhHHHHhhhhhcccchhhhhhhh-----------------hhHHHHHHHHHH--CCCEEEEeCCcccCCCC
Confidence            34445555555555555555544444333222                 123388899998  79999999999899999


Q ss_pred             CcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhh------hcccccccccccc
Q 020132          117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS------YFGANVLHPRTII  190 (330)
Q Consensus       117 ~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~------~~g~~v~~p~a~~  190 (330)
                      ++++++++++|++|+.||.+|+|++++|||||||||++||+.+|+++++++|+++|+.+++      ..|++++||.|++
T Consensus       150 ~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~  229 (242)
T PF00696_consen  150 EVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALE  229 (242)
T ss_dssp             TEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHH
T ss_pred             CcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999      7899999999999


Q ss_pred             eeeecccceEEee
Q 020132          191 PVMRYDIPIVIRN  203 (330)
Q Consensus       191 ~a~~~~i~v~i~~  203 (330)
                      +++++++|++|+|
T Consensus       230 ~~~~~~~~v~I~n  242 (242)
T PF00696_consen  230 AAEEGGIPVHIIN  242 (242)
T ss_dssp             HHHHTTSEEEEEE
T ss_pred             HHHcCCCcEEEeC
Confidence            9999999999986

In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....

>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis

Probab=99.89  E-value=7.9e-24  Score=195.92  Aligned_cols=165  Identities=18%  Similarity=0.287  Sum_probs=133.4

Q ss_pred             ccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCC
Q 020132           35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (330)
Q Consensus        35 ~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (330)
                      .++.++|+||..+.++++..|++.|+++     .+++ .+++.+++... +....+.++.+++  .|.|||+.+      
T Consensus        66 ~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~-----~q~l-~t~~~~~~~~~-~~~~~~~i~~ll~--~g~iPVv~~------  130 (251)
T cd04242          66 EKQALAAVGQSLLMALYEQLFAQYGIKV-----AQIL-LTRDDFEDRKR-YLNARNTLETLLE--LGVIPIINE------  130 (251)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEEE-EehhHhcchHH-HHHHHHHHHHHHH--CCCEEEEcC------
Confidence            4477899999999999999999999996     4443 34444432211 1223467888887  789999964      


Q ss_pred             CCCccc--ccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhh--hHHhhhhh-----hccccccc
Q 020132          115 DNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS--YQEAWEMS-----YFGANVLH  185 (330)
Q Consensus       115 ~g~~~~--lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is--~~e~~~l~-----~~g~~v~~  185 (330)
                      ++.+++  ++|+++|++|+.+|.+|+|++++|||||||||++||+.+|+++++++++  ++|+.+++     .++.++|+
T Consensus       131 ~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~  210 (251)
T cd04242         131 NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMR  210 (251)
T ss_pred             CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcH
Confidence            233333  6889999999999999999999999999999999999999999999999  99999985     56789999


Q ss_pred             c--cccceeeecccceEEeeecccc---------CceeEe
Q 020132          186 P--RTIIPVMRYDIPIVIRNIFNLS---------VPGIMI  214 (330)
Q Consensus       186 p--~a~~~a~~~~i~v~i~~~~~~~---------~~GT~I  214 (330)
                      |  +++..+.++|++++|.|+..|+         ..||.|
T Consensus       211 ~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i  250 (251)
T cd04242         211 TKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLF  250 (251)
T ss_pred             HHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEe
Confidence            9  6888899999999999987553         457766

G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir

>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis

Probab=99.88  E-value=9.4e-24  Score=192.85  Aligned_cols=150  Identities=23%  Similarity=0.267  Sum_probs=127.8

Q ss_pred             cccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecC
Q 020132           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (330)
Q Consensus        34 ~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (330)
                      ...+.+.+.|+++++++|+..|.++|+++..+++.++...+.      ..+.    +.+..+++  .+.|||++||.+..
T Consensus        63 ~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~------~~~~----~~l~~~l~--~g~ipVi~g~~g~~  130 (229)
T cd04239          63 ATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE------PYIR----RRAIRHLE--KGRIVIFGGGTGNP  130 (229)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc------cccH----HHHHHHHh--CCCEEEEeCccCCC
Confidence            345677788999999999999999999999999987643221      1122    67888887  78999999996321


Q ss_pred             CCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceee
Q 020132          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM  193 (330)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~  193 (330)
                           .    +.+|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.+++.   .++||.|++++.
T Consensus       131 -----~----~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~~  198 (229)
T cd04239         131 -----G----FTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLCR  198 (229)
T ss_pred             -----C----CCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHHH
Confidence                 1    2479999999999999999999999999999999999999999999999988763   889999999999


Q ss_pred             ecccceEEeeeccc
Q 020132          194 RYDIPIVIRNIFNL  207 (330)
Q Consensus       194 ~~~i~v~i~~~~~~  207 (330)
                      ++|+|++|.|+++|
T Consensus       199 ~~~i~v~I~~g~~~  212 (229)
T cd04239         199 RNKIPIIVFNGLKP  212 (229)
T ss_pred             HCCCeEEEECCCCh
Confidence            99999999998765

Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als

>PRK00358 pyrH uridylate kinase; Provisional

Probab=99.88  E-value=1.5e-23  Score=191.73  Aligned_cols=156  Identities=23%  Similarity=0.296  Sum_probs=126.3

Q ss_pred             ccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCC
Q 020132           35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (330)
Q Consensus        35 ~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (330)
                      ..+.+.+.++++++++++..|.++|+++..+++..+...+.        .  ...+.+.++++  .|.|||++|+.+   
T Consensus        66 ~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~~~--------~--~~~~~~~~~l~--~g~vPVv~g~~~---  130 (231)
T PRK00358         66 TADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAE--------P--YIRRRAIRHLE--KGRVVIFAAGTG---  130 (231)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccccC--------c--ccHHHHHHHHH--CCCEEEEECCCC---
Confidence            34566678899999999999999999998666544322111        1  12256778887  789999988632   


Q ss_pred             CCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeee
Q 020132          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR  194 (330)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~  194 (330)
                        ...    +.+|++|+++|.+|+|+++++||||||||++||+.+|+|+++++++++|+.++   |++++|+.++++|.+
T Consensus       131 --~~~----~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~  201 (231)
T PRK00358        131 --NPF----FTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARD  201 (231)
T ss_pred             --CCC----CCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHH
Confidence              111    34799999999999999999999999999999999999999999999987766   889999999999999


Q ss_pred             cccceEEeeecccc---------CceeEe
Q 020132          195 YDIPIVIRNIFNLS---------VPGIMI  214 (330)
Q Consensus       195 ~~i~v~i~~~~~~~---------~~GT~I  214 (330)
                      ++++++|.|+.+|+         ..||+|
T Consensus       202 ~~i~v~I~~g~~~~~l~~~l~g~~~GT~i  230 (231)
T PRK00358        202 NKIPIIVFNMNKPGNLKRVVKGEHIGTLV  230 (231)
T ss_pred             cCCcEEEECCCCchHHHHHHCCCCCCEEe
Confidence            99999999987653         357776

>PRK12314 gamma-glutamyl kinase; Provisional

Probab=99.87  E-value=9.8e-23  Score=190.12  Aligned_cols=168  Identities=17%  Similarity=0.226  Sum_probs=129.7

Q ss_pred             ccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCC
Q 020132           35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (330)
Q Consensus        35 ~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (330)
                      .++.++|+||.++.+++...|+++|+++     .+++ .|.+.|++.+. +....+.++++++  .|.|||+.+      
T Consensus        76 ~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~l-lT~~~~~~~~~-~~~~~~~l~~ll~--~g~IPVv~~------  140 (266)
T PRK12314         76 EKQALAAVGQPELMSLYSKFFAEYGIVV-----AQIL-LTRDDFDSPKS-RANVKNTFESLLE--LGILPIVNE------  140 (266)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEEE-EecccccchHH-HHHHHHHHHHHHH--CCCEEEEcC------
Confidence            4578999999999999999999999974     5664 45555543222 2233578888887  789999964      


Q ss_pred             CCCccccc----ccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh--HHhhhhhhc-----cccc
Q 020132          115 DNIPTTLK----RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSYF-----GANV  183 (330)
Q Consensus       115 ~g~~~~lg----rggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~--~e~~~l~~~-----g~~v  183 (330)
                      ++.+++.+    ||++|++|+++|.+++|+.++|||||||||++||+.+|+|+++++|++  .+..+++..     |.++
T Consensus       141 nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGG  220 (266)
T PRK12314        141 NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGG  220 (266)
T ss_pred             CCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCc
Confidence            22233333    788999999999999999999999999999999999999999999986  555555432     4445


Q ss_pred             ccc--cccceeeecccceEEeeeccc---------cCceeEeeCC
Q 020132          184 LHP--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP  217 (330)
Q Consensus       184 ~~p--~a~~~a~~~~i~v~i~~~~~~---------~~~GT~I~~~  217 (330)
                      |.|  +++..|.++|++++|.|+..|         +..||+|.+.
T Consensus       221 M~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~~  265 (266)
T PRK12314        221 MVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAPK  265 (266)
T ss_pred             hHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEccC
Confidence            655  688999999999999998655         2469998653

>PRK14557 pyrH uridylate kinase; Provisional

Probab=99.87  E-value=1.1e-22  Score=187.64  Aligned_cols=162  Identities=19%  Similarity=0.274  Sum_probs=126.9

Q ss_pred             ccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeec
Q 020132           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (330)
Q Consensus        33 ~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (330)
                      ....|.+.++||++|++++...|++.       ++....+.++..++....  +....++...++  .|.|||++||.+.
T Consensus        68 ~~~~D~ig~~g~~lna~ll~~~l~~~-------~~~~~~i~t~~~~~~~~~--~~~~~~~~~~l~--~g~VvV~~G~~g~  136 (247)
T PRK14557         68 RVEADNIGTLGTIINSLMLRGVLTSK-------TNKEVRVMTSIPFNAVAE--PYIRLRAVHHLD--NGYIVIFGGGNGQ  136 (247)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhh-------hCCceeEEeccccccccc--hhhHHHHHHHHh--CCCEEEEECCcCC
Confidence            34568999999999999999999984       233333344433332111  122244566676  7789999998663


Q ss_pred             CCCCCcccccccCcchhHHHHHHHHhhceeEEEe-ecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccce
Q 020132          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIP  191 (330)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~t-dv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~  191 (330)
                         +.++      +|++|+++|.+++|+.+++|| |||||||+||+.+|+|+++++++|.|+.   ..+.++|++.|+++
T Consensus       137 ---~~~s------tD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~~~  204 (247)
T PRK14557        137 ---PFVT------TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAALLL  204 (247)
T ss_pred             ---CccC------hHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHHHH
Confidence               3333      599999999999999999995 9999999999999999999999999874   45788999999999


Q ss_pred             eeecccceEEeeecccc---------CceeEeeCC
Q 020132          192 VMRYDIPIVIRNIFNLS---------VPGIMICRP  217 (330)
Q Consensus       192 a~~~~i~v~i~~~~~~~---------~~GT~I~~~  217 (330)
                      |.++|||++|.|+.+|+         ..||+|.+.
T Consensus       205 a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~  239 (247)
T PRK14557        205 ARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD  239 (247)
T ss_pred             HHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecC
Confidence            99999999999987653         469999764

>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.86  E-value=1.1e-22  Score=186.21  Aligned_cols=154  Identities=24%  Similarity=0.278  Sum_probs=128.7

Q ss_pred             ceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCC
Q 020132           37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN  116 (330)
Q Consensus        37 ~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g  116 (330)
                      |.+.+.|+++++++++..|+++|+++.++++.++....      ...+.    +.++++++  .+.|||++|+.+     
T Consensus        68 d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~~------~~~~~----~~l~~~l~--~g~ipV~~g~~G-----  130 (231)
T cd04254          68 DYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVA------EPYIR----RRAIRHLE--KGRVVIFAGGTG-----  130 (231)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhhh------cccCH----HHHHHHHH--CCCEEEEECCcC-----
Confidence            45666799999999999999999999999998862111      12334    78888888  789999998854     


Q ss_pred             CcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecc
Q 020132          117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYD  196 (330)
Q Consensus       117 ~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~  196 (330)
                      ...+    .+|++|+++|.+|+|+++++||||||||++||+.+|+++++++++++|+.+   .|++++|+.++++|.++|
T Consensus       131 ~~~~----~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~---~~~~~~d~~a~~~a~~~g  203 (231)
T cd04254         131 NPFF----TTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLS---KGLKVMDATAFTLCRDNN  203 (231)
T ss_pred             CCCC----CcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHh---cchhhhHHHHHHHHHHCC
Confidence            2111    259999999999999999999999999999999999999999999998866   478899999999999999


Q ss_pred             cceEEeeecccc---------CceeEe
Q 020132          197 IPIVIRNIFNLS---------VPGIMI  214 (330)
Q Consensus       197 i~v~i~~~~~~~---------~~GT~I  214 (330)
                      ++++|.|+.+|+         ..||+|
T Consensus       204 i~~~I~~g~~~~~l~~~l~g~~~GT~i  230 (231)
T cd04254         204 LPIVVFNINEPGNLLKAVKGEGVGTLI  230 (231)
T ss_pred             CeEEEEeCCCccHHHHHHCCCCCCEEe
Confidence            999999987553         457776

The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be

>TIGR02075 pyrH_bact uridylate kinase

Probab=99.85  E-value=3.2e-22  Score=183.24  Aligned_cols=156  Identities=22%  Similarity=0.268  Sum_probs=129.5

Q ss_pred             cceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCC
Q 020132           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (330)
Q Consensus        36 ~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (330)
                      .|.+.+.++++++++|+..|.++|+++.++++.++. .....         ...+.++++++  .|.|||+.|+.+.   
T Consensus        68 ~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~-~~~~~---------~~~~~i~~ll~--~g~VpV~~g~~g~---  132 (233)
T TIGR02075        68 ADYMGMLATVINGLALRDALEKLGVKTRVLSAISMP-QICES---------YIRRKAIKHLE--KGKVVIFSGGTGN---  132 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCC-CCccc---------cCHHHHHHHHH--CCCEEEEECCCCC---
Confidence            566778899999999999999999999999988764 11111         12377788887  7899999987542   


Q ss_pred             CCcccccccCcchhHHHHHHHHhhceeEEEee-cccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeee
Q 020132          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR  194 (330)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~td-v~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~  194 (330)
                      .   .   ..+|++|+++|..|+|+.+++||| |||||++||+++|+++++++++++|+.++   |++++|+.++++|.+
T Consensus       133 ~---~---~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~  203 (233)
T TIGR02075       133 P---F---FTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARD  203 (233)
T ss_pred             C---C---CCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHH
Confidence            1   1   135999999999999999999999 99999999999999999999999998764   778999999999999


Q ss_pred             cccceEEeeecccc---------CceeEee
Q 020132          195 YDIPIVIRNIFNLS---------VPGIMIC  215 (330)
Q Consensus       195 ~~i~v~i~~~~~~~---------~~GT~I~  215 (330)
                      +|++++|.|+.+|+         ..||+|+
T Consensus       204 ~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~  233 (233)
T TIGR02075       204 NNLPIVVFNIDEPGALKKVILGKGIGTLVS  233 (233)
T ss_pred             CCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence            99999999987553         4577763

This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.

>PRK13402 gamma-glutamyl kinase; Provisional

Probab=99.83  E-value=3.2e-21  Score=187.00  Aligned_cols=169  Identities=18%  Similarity=0.279  Sum_probs=134.1

Q ss_pred             ccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCC
Q 020132           35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (330)
Q Consensus        35 ~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (330)
                      .++.+.+.|+.++...+...|.++|+++     .++++ +.+.+.+ +-.+...+..++.+++  .+.|||+..      
T Consensus        71 ~~qalaavGq~~l~~~~~~~f~~~g~~~-----aqvLl-T~~d~~~-~~~y~n~~~~l~~LL~--~g~IPIine------  135 (368)
T PRK13402         71 EKQAMAAAGQGLLMATWSKLFLSHGFPA-----AQLLL-THGDLRD-RERYINIRNTINVLLE--RGILPIINE------  135 (368)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHCCCeE-----EEEEE-ecchhhh-HHHHHHHHHHHHHHHH--CCcEEEEeC------
Confidence            3456779999999999999999999998     34433 3333321 1113334578888887  789999962      


Q ss_pred             CCCccc--ccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh--HHhhhhh-----hccccccc
Q 020132          115 DNIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMS-----YFGANVLH  185 (330)
Q Consensus       115 ~g~~~~--lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~--~e~~~l~-----~~g~~v~~  185 (330)
                      ++.+++  ++||++|++|+++|.+++|+.++++|||||||++||+.+|++++|+++++  +|+.+++     ..|.++|+
T Consensus       136 nD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~  215 (368)
T PRK13402        136 NDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMR  215 (368)
T ss_pred             CCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCch
Confidence            122333  67899999999999999999999999999999999999999999999997  6777766     36789999


Q ss_pred             c--cccceeeecccceEEeeeccc---------cCceeEeeCCC
Q 020132          186 P--RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRPP  218 (330)
Q Consensus       186 p--~a~~~a~~~~i~v~i~~~~~~---------~~~GT~I~~~~  218 (330)
                      |  .|+..|.++|+|++|.|+..|         +..||+|.+..
T Consensus       216 ~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  259 (368)
T PRK13402        216 TKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTYFTPEE  259 (368)
T ss_pred             HHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcCCCCceEEecCC
Confidence            9  688999999999999998765         34699997653

>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]

Probab=99.83  E-value=5e-21  Score=171.90  Aligned_cols=181  Identities=22%  Similarity=0.288  Sum_probs=138.0

Q ss_pred             hhHHHHHhhhcccccCCCC----------------------CccccccceeeeccchhHHHHHHHHHHhcCCccccccce
Q 020132           11 LSYEFIRSTYNFLSNVDSG----------------------HATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTR   68 (330)
Q Consensus        11 ~~~~~i~~~~~~l~~~~~~----------------------~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~   68 (330)
                      .+++++..+.+.|+++.+.                      -.+....|++=....+++|.++...|.+.|++++.+++.
T Consensus        25 id~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai  104 (238)
T COG0528          25 IDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAI  104 (238)
T ss_pred             CCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccc
Confidence            4677777777777777642                      122223444444556677778888899999998888776


Q ss_pred             eEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEee-
Q 020132           69 EVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTD-  147 (330)
Q Consensus        69 ~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~td-  147 (330)
                      .+...          ..+.+..+..+.++  .+.|+|..|  |...-+++|       |++|+++|..++|+-++..|+ 
T Consensus       105 ~~~~~----------~e~~~~~~A~~~l~--~grVvIf~g--Gtg~P~fTT-------Dt~AALrA~ei~ad~ll~atn~  163 (238)
T COG0528         105 AMPQV----------AEPYSRREAIRHLE--KGRVVIFGG--GTGNPGFTT-------DTAAALRAEEIEADVLLKATNK  163 (238)
T ss_pred             cCccc----------cCccCHHHHHHHHH--cCCEEEEeC--CCCCCCCch-------HHHHHHHHHHhCCcEEEEeccC
Confidence            65311          12234466777777  789999877  222234444       999999999999999999995 


Q ss_pred             cccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecccceEEeeeccc---------cCceeEee
Q 020132          148 VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (330)
Q Consensus       148 v~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~---------~~~GT~I~  215 (330)
                      |||||++||+++|+|+++++|||.|+.++   +.++|+|.|+.+|++++||++++|...+         ++.||.|.
T Consensus       164 VDGVY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~  237 (238)
T COG0528         164 VDGVYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVE  237 (238)
T ss_pred             CCceeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEec
Confidence            99999999999999999999999999877   5899999999999999999999997654         35577764

>PRK14556 pyrH uridylate kinase; Provisional

Probab=99.81  E-value=1.2e-20  Score=173.02  Aligned_cols=157  Identities=20%  Similarity=0.258  Sum_probs=127.1

Q ss_pred             ccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCC
Q 020132           35 FTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (330)
Q Consensus        35 ~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (330)
                      ..|++=..+.++.|.++...|.+.|++++.+++-...-     +  ++  . .+.+++.+.++  .|.|+|+.|+.|   
T Consensus        82 ~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~~~-----~--~e--~-~~~~~~~~~l~--~g~vvi~~gg~G---  146 (249)
T PRK14556         82 TADSMGMIATMINALALRDMLISEGVDAEVFSAKGVDG-----L--LK--V-ASAHEFNQELA--KGRVLIFAGGTG---  146 (249)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccCc-----C--CC--C-CCHHHHHHHHh--CCCEEEEECCCC---
Confidence            45666667788889999999999999988877654311     1  11  1 24477777887  788999888754   


Q ss_pred             CCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeee
Q 020132          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMR  194 (330)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~  194 (330)
                      ++..+      +|++|+++|..++|+.+++|||||||||+||+++|+|+++++++|.|+.+.   +..+|++.|+++|.+
T Consensus       147 ~p~~S------tD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~---~l~vmd~~A~~~a~~  217 (249)
T PRK14556        147 NPFVT------TDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSK---ELNVMDLGAFTQCRD  217 (249)
T ss_pred             CCcCC------cHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhccc---chHhHHHHHHHHHHH
Confidence            34444      399999999999999999999999999999999999999999999988653   568999999999999


Q ss_pred             cccceEEeeeccc---------cCceeEee
Q 020132          195 YDIPIVIRNIFNL---------SVPGIMIC  215 (330)
Q Consensus       195 ~~i~v~i~~~~~~---------~~~GT~I~  215 (330)
                      +|||++|+|+.+|         +..||+|.
T Consensus       218 ~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~  247 (249)
T PRK14556        218 FGIPIYVFDLTQPNALVDAVLDSKYGTWVT  247 (249)
T ss_pred             CCCcEEEECCCCchHHHHHHcCCCCceEEE
Confidence            9999999998655         34688874

>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway)

Probab=99.80  E-value=3.7e-20  Score=168.28  Aligned_cols=112  Identities=24%  Similarity=0.284  Sum_probs=96.1

Q ss_pred             HHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is  169 (330)
                      +.+.++++  .+.|||++||++    + .+      +|++|+++|.+|+|+++++||||||||++||+..|+++++++++
T Consensus        94 ~~~~~~l~--~g~vpv~~G~~~----~-~s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~  160 (221)
T cd04253          94 EEALEAMF--TGKIVVMGGTEP----G-QS------TDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLS  160 (221)
T ss_pred             HHHHHHHH--cCCeEEEECCCC----C-Cc------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeC
Confidence            55667777  789999999964    2 22      49999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhhc-----cc-ccccccccceeeecccceEEeeecccc---------CceeEe
Q 020132          170 YQEAWEMSYF-----GA-NVLHPRTIIPVMRYDIPIVIRNIFNLS---------VPGIMI  214 (330)
Q Consensus       170 ~~e~~~l~~~-----g~-~v~~p~a~~~a~~~~i~v~i~~~~~~~---------~~GT~I  214 (330)
                      ++|+.+++..     |. .++|+.+++++.+++++++|.|+..|+         ..||.|
T Consensus       161 ~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I  220 (221)
T cd04253         161 ADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTII  220 (221)
T ss_pred             HHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEe
Confidence            9999999865     44 578999999999999999999986553         357766

The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=99.79  E-value=4.9e-20  Score=179.54  Aligned_cols=169  Identities=20%  Similarity=0.262  Sum_probs=131.1

Q ss_pred             cceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEee-eeecCC
Q 020132           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG-FIASTP  114 (330)
Q Consensus        36 ~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G-~i~~~~  114 (330)
                      .+.+.+.||..+++++...|+++|+++..     +. .+.+.+.. ...+......++.+++  .+.|||+++ +...  
T Consensus        76 ~qa~aavGq~~L~~~~~~~l~~~gi~~~q-----il-~t~~d~~~-~~~~ln~~~~i~~Ll~--~g~IPVi~~nd~v~--  144 (372)
T PRK05429         76 KQAAAAVGQSRLMQAYEELFARYGITVAQ-----IL-LTRDDLED-RERYLNARNTLRTLLE--LGVVPIINENDTVA--  144 (372)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHCCCCEEE-----EE-eehhHhhh-hhHhhhHHHHHHHHHH--CCCEEEEcCCCccc--
Confidence            45677899999999999999999999654     33 23332311 1112223467788887  789999963 2111  


Q ss_pred             CCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh--HHhhhhhh-----cccccccc-
Q 020132          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHP-  186 (330)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~~p-  186 (330)
                         +..+++|++|++|+++|.+++|+.++|+|||||||++||+.+|++++++++++  +|+.+++.     .|.++|+| 
T Consensus       145 ---~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~K  221 (372)
T PRK05429        145 ---TDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATK  221 (372)
T ss_pred             ---eecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHH
Confidence               11256789999999999999999999999999999999999999999999998  67878763     57789999 


Q ss_pred             -cccceeeecccceEEeeeccc---------cCceeEeeCCC
Q 020132          187 -RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRPP  218 (330)
Q Consensus       187 -~a~~~a~~~~i~v~i~~~~~~---------~~~GT~I~~~~  218 (330)
                       .|+..|.++|++++|.|+..|         +..||+|.+..
T Consensus       222 l~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~  263 (372)
T PRK05429        222 LEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQE  263 (372)
T ss_pred             HHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCC
Confidence             688889999999999998655         24699998653

>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms

Probab=99.79  E-value=1.1e-19  Score=168.27  Aligned_cols=145  Identities=15%  Similarity=0.192  Sum_probs=119.7

Q ss_pred             HHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcch
Q 020132           49 QMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDF  128 (330)
Q Consensus        49 ~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~  128 (330)
                      ..+.+.|.++|+++.++++.++.....++.  ..++.    +.++++++  .|.|||++|+++.+.+|.+.++   ++|+
T Consensus        83 ~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~--~~~~~----~~l~~ll~--~g~iPVi~~~~~~~~~~~~~~~---~~D~  151 (252)
T cd04241          83 SIVVDALLEAGVPAVSVPPSSFFVTENGRI--VSFDL----EVIKELLD--RGFVPVLHGDVVLDEGGGITIL---SGDD  151 (252)
T ss_pred             HHHHHHHHHCCCCeEEEChHHeEEecCCee--eeecH----HHHHHHHh--CCCEEEEcCCeEecCCCCeEEe---ChHH
Confidence            366889999999999999999876543221  23444    88899998  8999999999888888877665   4899


Q ss_pred             hHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhc-------cccccccc--ccceeeecccce
Q 020132          129 SAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-------GANVLHPR--TIIPVMRYDIPI  199 (330)
Q Consensus       129 ~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~-------g~~v~~p~--a~~~a~~~~i~v  199 (330)
                      +|+.+|.+|+|++++|+|||||||++||   |+++++++++++++.++...       ..++|.++  ++..|.++|+++
T Consensus       152 ~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v  228 (252)
T cd04241         152 IVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEV  228 (252)
T ss_pred             HHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeE
Confidence            9999999999999999999999999999   88999999999888887642       34688884  666777789999


Q ss_pred             EEeeeccc
Q 020132          200 VIRNIFNL  207 (330)
Q Consensus       200 ~i~~~~~~  207 (330)
                      +|.|+..+
T Consensus       229 ~I~~g~~~  236 (252)
T cd04241         229 YIFNGDKP  236 (252)
T ss_pred             EEEeCCCH
Confidence            99998754

Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>TIGR01027 proB glutamate 5-kinase

Probab=99.78  E-value=9.6e-20  Score=176.92  Aligned_cols=168  Identities=17%  Similarity=0.268  Sum_probs=130.4

Q ss_pred             cceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEe-eeeecCC
Q 020132           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIAT-GFIASTP  114 (330)
Q Consensus        36 ~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~-G~i~~~~  114 (330)
                      ++.+.+.|+.++..++...|.++|+++     .++++ +.+.+.+. -.+......+..+++  .+.|||++ ++...  
T Consensus        68 ~qa~aa~Gq~~l~~~~~~~l~~~Gi~~-----aqill-t~~d~~~~-~~~lna~~~i~~Ll~--~g~iPVi~end~v~--  136 (363)
T TIGR01027        68 KQALAAVGQVRLMQLYEQLFSQYGIKV-----AQILL-TRADFSDR-ERYLNARNTLEALLE--LGVVPIINENDTVA--  136 (363)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHcCCeE-----EEEEE-eccchhhH-HHHHHHHHHHHHHHh--CCCEEEEeCCCcee--
Confidence            456788999999999999999999986     34433 43333211 112234477788887  78999996 33111  


Q ss_pred             CCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhH--Hhhhhh-----hccccccccc
Q 020132          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMS-----YFGANVLHPR  187 (330)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~--e~~~l~-----~~g~~v~~p~  187 (330)
                         +..+++|++|++|+++|.+++|+.++|+|||||||++||+.+|+|++++++++.  +..+++     .+|.++|+|+
T Consensus       137 ---~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~K  213 (363)
T TIGR01027       137 ---TEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTK  213 (363)
T ss_pred             ---eeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHH
Confidence               133667889999999999999999999999999999999999999999999864  444554     3678899997


Q ss_pred             --ccceeeecccceEEeeecccc---------CceeEeeCC
Q 020132          188 --TIIPVMRYDIPIVIRNIFNLS---------VPGIMICRP  217 (330)
Q Consensus       188 --a~~~a~~~~i~v~i~~~~~~~---------~~GT~I~~~  217 (330)
                        |+..|.++|++++|.|+..|+         ..||+|.+.
T Consensus       214 l~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  254 (363)
T TIGR01027       214 LQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQ  254 (363)
T ss_pred             HHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeC
Confidence              889999999999999987652         459999764

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional

Probab=99.77  E-value=2.5e-19  Score=167.42  Aligned_cols=163  Identities=14%  Similarity=0.206  Sum_probs=129.2

Q ss_pred             eeeccchhHHHHHHHHHHhcCCccccccceeEEEECC------------------C-CCCC-CCCCchhhHHHHHHhhcc
Q 020132           39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP------------------T-SSNQ-VDPDFSESEKRLEKWFSQ   98 (330)
Q Consensus        39 v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~------------------~-~~g~-~~~~~~~~~~~i~~~l~~   98 (330)
                      ..+.| .++..++ +.|.++|++|+++++.++.+++.                  . ..|. .+++.    +.++.+++ 
T Consensus        75 ~~a~~-~ln~~lv-~~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~----~~i~~ll~-  147 (268)
T PRK14058         75 IMAMA-LINKQLV-ERLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNT----DLLKLLLK-  147 (268)
T ss_pred             HHHHH-HHHHHHH-HHHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECH----HHHHHHHH-
Confidence            44778 7777776 59999999999999998744321                  1 1111 23444    88999998 


Q ss_pred             CCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh
Q 020132           99 SPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY  178 (330)
Q Consensus        99 ~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~  178 (330)
                       .+.|||++|+ +.+..|+.+++   ++|.+|+.+|.+|+|++++|||||+|||++||.   +++++++++++|+.++..
T Consensus       148 -~g~iPVi~~~-~~~~~g~~~~i---~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~  219 (268)
T PRK14058        148 -AGYLPVVAPP-ALSEEGEPLNV---DGDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSK  219 (268)
T ss_pred             -CCCEEEEeCc-eECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhh
Confidence             7899999997 66677887765   589999999999999999999999999999984   378999999999999887


Q ss_pred             ccccccccc--ccceeeeccc-ceEEeeecccc-------CceeEeeC
Q 020132          179 FGANVLHPR--TIIPVMRYDI-PIVIRNIFNLS-------VPGIMICR  216 (330)
Q Consensus       179 ~g~~v~~p~--a~~~a~~~~i-~v~i~~~~~~~-------~~GT~I~~  216 (330)
                      ...++|.|+  ++..+.++|+ +++|.|+..|+       ..||+|.+
T Consensus       220 ~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~GT~I~~  267 (268)
T PRK14058        220 AAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGEGTVIVN  267 (268)
T ss_pred             ccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCCceEEec
Confidence            777899985  6666677888 69999886553       24898864

>TIGR02076 pyrH_arch uridylate kinase, putative

Probab=99.77  E-value=1.6e-19  Score=164.08  Aligned_cols=137  Identities=23%  Similarity=0.225  Sum_probs=106.7

Q ss_pred             cceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCC
Q 020132           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (330)
Q Consensus        36 ~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (330)
                      .|.+...+++++++++...|...++++...+                  .    ....+.+.  .+.|||++||++    
T Consensus        62 ~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~------------------~----~~~~~~l~--~g~ipv~~G~~~----  113 (221)
T TIGR02076        62 LDEIGIDATRLNAMLLIAALGDDAYPKVPEN------------------F----EEALEAMS--LGKIVVMGGTHP----  113 (221)
T ss_pred             HHHhhhHHHHHHHHHHHHHHHhcCCCCcCCC------------------H----HHHHHHHH--cCCEEEEcCCCC----
Confidence            3455556677777776666666666554321                  1    22344554  678999999852    


Q ss_pred             CCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh---cccc---ccccccc
Q 020132          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FGAN---VLHPRTI  189 (330)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~---~g~~---v~~p~a~  189 (330)
                      | .+      +|++|+++|.+++|+.++++|||||||++||+++|+++++++++++|+.+++.   +|.+   .+++.|+
T Consensus       114 ~-~s------~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~  186 (221)
T TIGR02076       114 G-HT------TDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAA  186 (221)
T ss_pred             C-CC------cHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHH
Confidence            2 22      49999999999999999999999999999999999999999999999999876   3333   5688899


Q ss_pred             ceeeecccceEEeeeccc
Q 020132          190 IPVMRYDIPIVIRNIFNL  207 (330)
Q Consensus       190 ~~a~~~~i~v~i~~~~~~  207 (330)
                      +.+.+.+++++|.|+..|
T Consensus       187 ~~~~~~~i~v~I~~g~~~  204 (221)
T TIGR02076       187 KIIERSKIRTIVVNGRDP  204 (221)
T ss_pred             HHHHHCCCcEEEECCCCc
Confidence            999999999999998765

This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.

>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis

Probab=99.75  E-value=9.5e-19  Score=164.40  Aligned_cols=151  Identities=15%  Similarity=0.193  Sum_probs=121.0

Q ss_pred             cchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCC---------------CCCCchhhHHHHHHhhccCCCccEEEe
Q 020132           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ---------------VDPDFSESEKRLEKWFSQSPSNTIIAT  107 (330)
Q Consensus        43 GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~---------------~~~~~~~~~~~i~~~l~~~~~~VpVv~  107 (330)
                      | .++.. +++.|.+.|++|+++++.+..+++.++++.               ..++.    +.++.+++  .+.|||++
T Consensus        93 g-~ln~~-l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~----~~i~~ll~--~g~IPVi~  164 (279)
T cd04250          93 G-KVNKE-IVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNP----ELLETLLE--AGYIPVIA  164 (279)
T ss_pred             C-chHHH-HHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcH----HHHHHHHH--CCCeEEEc
Confidence            6 45555 499999999999999999875565444331               12333    78888888  78999999


Q ss_pred             eeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhc--cccccc
Q 020132          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLH  185 (330)
Q Consensus       108 G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~--g~~v~~  185 (330)
                      | ++.+..|++++++   +|.+|+.+|.+|+|+++++||||+|||++||.   .++++++++++|+.+++..  ..++|.
T Consensus       165 ~-~~~~~~g~~~~~~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~  237 (279)
T cd04250         165 P-VGVGEDGETYNIN---ADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMI  237 (279)
T ss_pred             C-CccCCCCcEEEeC---HHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchH
Confidence            9 5888888888774   89999999999999999999999999999885   3799999999999999854  357888


Q ss_pred             cc--ccceeeecccc-eEEeeecccc
Q 020132          186 PR--TIIPVMRYDIP-IVIRNIFNLS  208 (330)
Q Consensus       186 p~--a~~~a~~~~i~-v~i~~~~~~~  208 (330)
                      ++  ++..+.++|++ ++|.|+..|+
T Consensus       238 ~Kl~~a~~a~~~g~~~v~I~~g~~~~  263 (279)
T cd04250         238 PKVEACIEALEGGVKAAHIIDGRVPH  263 (279)
T ss_pred             HHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence            84  55666677876 9999886653

In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A

>TIGR00761 argB acetylglutamate kinase

Probab=99.74  E-value=1.1e-18  Score=159.47  Aligned_cols=140  Identities=16%  Similarity=0.252  Sum_probs=111.8

Q ss_pred             cchhHHHHHHHHHHhcCCccccccceeEEEECCCCC--------CC-CCCCchhhHHHHHHhhccCCCccEEEeeeeecC
Q 020132           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS--------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (330)
Q Consensus        43 GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~--------g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (330)
                      ++.++..+ .+.|.++|++++++++.+..+++...+        |. ..++.    +.++.+++  .+.|||++|+ +.+
T Consensus        75 ~g~~~~~i-~~~L~~~G~~a~~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~----~~i~~~l~--~g~IPVi~~~-~~~  146 (231)
T TIGR00761        75 IGQVNKEL-VALLNKHGINAIGLTGGDGQLFTARSLDKEDLGYVGEIKKVNK----ALLEALLK--AGYIPVISSL-ALT  146 (231)
T ss_pred             hcchHHHH-HHHHHhCCCCcccccCCCCCEEEEEECCCccCCcccceEEEcH----HHHHHHHH--CCCeEEECCC-ccC
Confidence            44666555 559999999999999998644433222        11 12333    88899998  7899999995 888


Q ss_pred             CCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc--ccccccc--cc
Q 020132          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TI  189 (330)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a~  189 (330)
                      .+|++++++   +|++|+.||.+|+|++++|||||||||++||+     +++++++++|+.+++..|  .++|.|+  ++
T Consensus       147 ~~g~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a  218 (231)
T TIGR00761       147 AEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAA  218 (231)
T ss_pred             CCCcEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHH
Confidence            889998884   89999999999999999999999999999874     689999999999999766  5788884  56


Q ss_pred             ceeeecccc
Q 020132          190 IPVMRYDIP  198 (330)
Q Consensus       190 ~~a~~~~i~  198 (330)
                      ..|.++|++
T Consensus       219 ~~a~~~gv~  227 (231)
T TIGR00761       219 LEALRGGVK  227 (231)
T ss_pred             HHHHHcCCC
Confidence            666667776

This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.

>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis

Probab=99.73  E-value=1.8e-18  Score=160.15  Aligned_cols=147  Identities=17%  Similarity=0.170  Sum_probs=116.1

Q ss_pred             cchhHHHHHHHHHHhcCCccccccceeEEEECCCCCC-------C-CCCCchhhHHHHHHhhccCCCccEEEeeeeecCC
Q 020132           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSN-------Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (330)
Q Consensus        43 GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g-------~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (330)
                      ++.++.++++..+ ++|++|+++++.+..+++..+++       . .+++.    +.++.+++  .|.|||++|+ +.+.
T Consensus        77 ~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~----~~l~~ll~--~g~ipVi~~~-g~~~  148 (252)
T cd04249          77 AGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPELGAVGKATANDP----SLLNDLLK--AGFLPIISSI-GADD  148 (252)
T ss_pred             cCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCCCCcccceEEEcH----HHHHHHHH--CCCEEEECCC-EECC
Confidence            6677777777665 89999999999987656543222       1 12344    88898998  8899999985 8888


Q ss_pred             CCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc--cccccc---ccc
Q 020132          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP---RTI  189 (330)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p---~a~  189 (330)
                      +|++++++   +|.+|+.+|.+|+|+ +++||||+|||+.||      +++++++++|+.++...|  ..+|.+   .|+
T Consensus       149 ~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~  218 (252)
T cd04249         149 QGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAAL  218 (252)
T ss_pred             CCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHH
Confidence            99999885   899999999999999 689999999999775      588999999999988654  356665   466


Q ss_pred             ceeeecccceEEeeeccc
Q 020132          190 IPVMRYDIPIVIRNIFNL  207 (330)
Q Consensus       190 ~~a~~~~i~v~i~~~~~~  207 (330)
                      +.+.+.+++++|.|+..|
T Consensus       219 ~~~~~~~~~v~I~~g~~~  236 (252)
T cd04249         219 DAAQSLRRGIDIASWQYP  236 (252)
T ss_pred             HHHHhCCCeEEEEeCCCc
Confidence            666666789999987654

There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).

>PRK00942 acetylglutamate kinase; Provisional

Probab=99.72  E-value=5.1e-18  Score=159.75  Aligned_cols=156  Identities=19%  Similarity=0.210  Sum_probs=122.4

Q ss_pred             cchhHHHHHHHHHHhcCCccccccceeEEEECCCCC---------CC-CCCCchhhHHHHHHhhccCCCccEEEeeeeec
Q 020132           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS---------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (330)
Q Consensus        43 GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~---------g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (330)
                      | +++. .+.+.|.++|++++++++.+..+++...+         |. ..++.    +.++.+++  .|.|||+++ ++.
T Consensus       102 G-~l~~-~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~----~~l~~ll~--~g~vpVv~~-~~~  172 (283)
T PRK00942        102 G-KVNK-ELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNP----ALLEALLE--AGYIPVISP-IGV  172 (283)
T ss_pred             C-chHH-HHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECH----HHHHHHHH--CCCEEEEcC-cEE
Confidence            5 4454 45599999999999999998766654332         11 12333    88899998  789999997 588


Q ss_pred             CCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc--ccccccc--c
Q 020132          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--T  188 (330)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a  188 (330)
                      +.+|++++++   +|.+|+.||.+|+|++++|||||+|||++      +++++++++++|+.+++..+  .++|.|+  +
T Consensus       173 ~~~g~~~~l~---~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~  243 (283)
T PRK00942        173 GEDGETYNIN---ADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEA  243 (283)
T ss_pred             CCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHH
Confidence            9889988874   89999999999999999999999999986      37899999999999998754  3677774  4


Q ss_pred             cceeeeccc-ceEEeeeccc----------cCceeEeeC
Q 020132          189 IIPVMRYDI-PIVIRNIFNL----------SVPGIMICR  216 (330)
Q Consensus       189 ~~~a~~~~i-~v~i~~~~~~----------~~~GT~I~~  216 (330)
                      +..+.++|+ +++|.|+..+          +..||.|.+
T Consensus       244 a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~  282 (283)
T PRK00942        244 ALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVP  282 (283)
T ss_pred             HHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEec
Confidence            555556777 5999987544          346898865

>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like

Probab=99.70  E-value=1.1e-17  Score=155.25  Aligned_cols=147  Identities=16%  Similarity=0.205  Sum_probs=116.1

Q ss_pred             cchhHHHHHHHHHHhcCCccccccceeEEEECCCCC----------CC-CCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSS----------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        43 GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~----------g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      | +++.. +++.|+++|++|+++++.+..+++..+.          |. .+++.    +.++.+++  .|.|||++| ++
T Consensus        77 g-~ln~~-i~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~----~~l~~ll~--~g~ipVv~~-~~  147 (256)
T cd04238          77 G-KVNKE-LVSLLNRAGGKAVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNP----ELLETLLE--AGYIPVIAP-IA  147 (256)
T ss_pred             C-chHHH-HHHHHHhCCCCCCCcccccCCEEEEEECCCCCCCcccccceEEECH----HHHHHHHH--CCCEEEECC-cE
Confidence            6 45555 4999999999999999998755554321          22 23444    88888998  789999998 58


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhc--cccccccc--
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF--GANVLHPR--  187 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~--g~~v~~p~--  187 (330)
                      .+..|++++++   +|.+|+.+|.+|+|++++|||||+|||++      +++++++++++|+.+++..  ..++|.|+  
T Consensus       148 ~~~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~  218 (256)
T cd04238         148 VDEDGETYNVN---ADTAAGAIAAALKAEKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVE  218 (256)
T ss_pred             ECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHH
Confidence            88889988874   89999999999999999999999999987      2689999999999998753  34778774  


Q ss_pred             ccceeeeccc-ceEEeeeccc
Q 020132          188 TIIPVMRYDI-PIVIRNIFNL  207 (330)
Q Consensus       188 a~~~a~~~~i-~v~i~~~~~~  207 (330)
                      ++..+.++++ +++|.|+..+
T Consensus       219 ~a~~~~~~g~~~v~I~~g~~~  239 (256)
T cd04238         219 AALEALEGGVRKVHIIDGRVP  239 (256)
T ss_pred             HHHHHHHhCCCEEEEeCCCCC
Confidence            4555556666 5999987654

Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>PLN02512 acetylglutamate kinase

Probab=99.69  E-value=4.1e-17  Score=155.44  Aligned_cols=155  Identities=17%  Similarity=0.204  Sum_probs=121.1

Q ss_pred             HHHHHHHHHhcCCccccccceeEEEECCCCC---------CC-CCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCC
Q 020132           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSS---------NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (330)
Q Consensus        48 a~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~---------g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~  117 (330)
                      ...+++.|.++|++++++++.+..+++..++         |. .+++.    +.++.+++  .+.|||++|+ +.+..|+
T Consensus       129 n~~lv~~L~~~Gv~av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~----~~i~~lL~--~g~IPVi~~~-~~d~~g~  201 (309)
T PLN02512        129 NKSLVSLINKAGGTAVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDP----TVLRPLVD--DGHIPVIATV-AADEDGQ  201 (309)
T ss_pred             HHHHHHHHHHcCCCeEEeehhhCCEEEEEEcCcCccccccceeeecCH----HHHHHHHh--CCCEEEEeCc-eECCCCC
Confidence            4558899999999999999987543432222         11 23444    88899998  8899999996 8888888


Q ss_pred             cccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc--ccccccc--ccceee
Q 020132          118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TIIPVM  193 (330)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a~~~a~  193 (330)
                      ++++   ++|.+|+.||.+|+|++++|+|||+|||+++|.   +++++++++++|+.++...|  .++|.|+  ++..+.
T Consensus       202 ~~~i---~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~~~---~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~  275 (309)
T PLN02512        202 AYNI---NADTAAGEIAAALGAEKLILLTDVAGVLEDKDD---PGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSL  275 (309)
T ss_pred             Eecc---CHHHHHHHHHHHcCCCEEEEEeCCcceeCCCCC---CcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence            8777   489999999999999999999999999998643   37899999999999987543  5789885  445556


Q ss_pred             ecccc-eEEeeeccc----------cCceeEee
Q 020132          194 RYDIP-IVIRNIFNL----------SVPGIMIC  215 (330)
Q Consensus       194 ~~~i~-v~i~~~~~~----------~~~GT~I~  215 (330)
                      ++|++ ++|.++..+          +..||.|.
T Consensus       276 ~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~  308 (309)
T PLN02512        276 AQGVKTAHIIDGRVPHSLLLEILTDEGAGTMIT  308 (309)
T ss_pred             HcCCCEEEEecCCCCChHHHHHhcCCCCeeEEe
Confidence            77885 899887544          23588775

>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC)

Probab=99.68  E-value=1.8e-17  Score=154.09  Aligned_cols=153  Identities=14%  Similarity=0.193  Sum_probs=118.4

Q ss_pred             ceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCC-------------------CCC-CCCCchhhHHHHHHhh
Q 020132           37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS-------------------SNQ-VDPDFSESEKRLEKWF   96 (330)
Q Consensus        37 ~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~-------------------~g~-~~~~~~~~~~~i~~~l   96 (330)
                      +.+....+.++..+ .+.|.++|++|+++++.+..+++.+.                   .|. ..++.    +.++.++
T Consensus        68 ~~~~~a~~~ln~~i-v~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~----~~i~~ll  142 (257)
T cd04251          68 EVFVMVMGLINKKI-VARLHSLGVKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNS----DLIEALL  142 (257)
T ss_pred             HHHHHHHHHHHHHH-HHHHHhCCCCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcH----HHHHHHH
Confidence            33343347777775 55999999999999998864332111                   111 12344    8889999


Q ss_pred             ccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhh
Q 020132           97 SQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM  176 (330)
Q Consensus        97 ~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l  176 (330)
                      +  .+.|||++++ +.+.+|+++++   ++|++|+.+|.+|+|++++|||||+|||++       ++++++++++|+.++
T Consensus       143 ~--~g~vpVi~~~-~~~~~G~~~~i---~~D~~A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l  209 (257)
T cd04251         143 D--AGYLPVVSPV-AYSEEGEPLNV---DGDRAAAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESL  209 (257)
T ss_pred             h--CCCeEEEeCc-EECCCCcEEec---CHHHHHHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHH
Confidence            8  8899999887 66788988887   489999999999999999999999999963       679999999999999


Q ss_pred             hhccccccccc--ccceeeeccc-ceEEeeeccc
Q 020132          177 SYFGANVLHPR--TIIPVMRYDI-PIVIRNIFNL  207 (330)
Q Consensus       177 ~~~g~~v~~p~--a~~~a~~~~i-~v~i~~~~~~  207 (330)
                      ...-.++|.|+  ++..+.++|+ .++|.++..|
T Consensus       210 ~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~  243 (257)
T cd04251         210 LEKAGGGMKRKLLAAAEAVEGGVREVVIGDARAD  243 (257)
T ss_pred             HhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCc
Confidence            76556788884  6666677888 4888887655

This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).

>CHL00202 argB acetylglutamate kinase; Provisional

Probab=99.68  E-value=7.2e-17  Score=152.07  Aligned_cols=156  Identities=17%  Similarity=0.253  Sum_probs=123.2

Q ss_pred             cchhHHHHHHHHHHhcCCccccccceeEEEECCCC-----C---CC-CCCCchhhHHHHHHhhccCCCccEEEeeeeecC
Q 020132           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS-----S---NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (330)
Q Consensus        43 GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~-----~---g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (330)
                      |+.  ...+++.|.+.|++|+++++.+..+++..+     +   |. .+++.    +.++.+++  .|.|||++|+ +.+
T Consensus       102 g~l--n~~lv~~L~~~Gv~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~----~~i~~ll~--~g~iPVi~~~-~~~  172 (284)
T CHL00202        102 GKV--NKDLVGSINANGGKAVGLCGKDANLIVARASDKKDLGLVGEIQQVDP----QLIDMLLE--KNYIPVIASV-AAD  172 (284)
T ss_pred             hHH--HHHHHHHHHhCCCCeeeeeeccCCEEEEEeCCCcccccceeEEecCH----HHHHHHHH--CCCEEEECCC-ccC
Confidence            444  677889999999999999999865443211     1   22 23555    88999998  7899999995 888


Q ss_pred             CCCCcccccccCcchhHHHHHHHHhhceeEEEeeccccccc--CccchhHhhhhhhhhhHHhhhhhhcc--ccccccc--
Q 020132          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA--DPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--  187 (330)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~--dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--  187 (330)
                      ..|++++++   +|.+|+.+|.+|+|++++|+|||+|||++  ||.     +++++++++|+.+++..|  .++|.|+  
T Consensus       173 ~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~d~~-----~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~  244 (284)
T CHL00202        173 HDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGILADINDPN-----SLISTLNIKEARNLASTGIISGGMIPKVN  244 (284)
T ss_pred             CCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhhcCCCCCCC-----CccccccHHHHHHHHhcCCCCCCHHHHHH
Confidence            889888874   89999999999999999999999999984  333     799999999999998654  4789885  


Q ss_pred             ccceeeecccc-eEEeeecccc----------CceeEee
Q 020132          188 TIIPVMRYDIP-IVIRNIFNLS----------VPGIMIC  215 (330)
Q Consensus       188 a~~~a~~~~i~-v~i~~~~~~~----------~~GT~I~  215 (330)
                      ++..|.++|++ ++|.++..++          ..||.|.
T Consensus       245 aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~  283 (284)
T CHL00202        245 CCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV  283 (284)
T ss_pred             HHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence            55666678886 7898876553          3588774

>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis

Probab=99.66  E-value=6.9e-17  Score=150.32  Aligned_cols=182  Identities=14%  Similarity=0.156  Sum_probs=119.5

Q ss_pred             HHHHHhhhcccccCCCCCccccccceeeeccchhHHHHHHHHHHhcCCcccccc------cee-EEEECC--CCCCCCCC
Q 020132           13 YEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMD------TRE-VLIVNP--TSSNQVDP   83 (330)
Q Consensus        13 ~~~i~~~~~~l~~~~~~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~------~~~-~~~~~~--~~~g~~~~   83 (330)
                      .+.|+.+.+.|+++.+      ..+.++.+|+--+++....+....|++....+      ... .++...  ..+|...+
T Consensus        47 ~~~i~~la~~i~~~~~------~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i  120 (262)
T cd04255          47 AEAVLPLVEEIVALRP------EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATLLAKHGGSKV  120 (262)
T ss_pred             HHHHHHHHHHHHHHhC------CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence            4567777777777654      14566777777677643444446676654443      111 001111  11222212


Q ss_pred             CchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccccC------cchhHHHHHHHHhhceeEEEeecccccccCcc
Q 020132           84 DFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG------SDFSAAIMGALLRAHQVTIWTDVDGVYSADPR  157 (330)
Q Consensus        84 ~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrgg------sD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~  157 (330)
                      .. .....++++++  .|.|||++|+.+.+   ..++++|+|      +|++|+++|.+++|+.++++|||||||++||+
T Consensus       121 ~~-~~~~~l~~lL~--~g~vPVi~g~~~~~---~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~  194 (262)
T cd04255         121 GH-GDLLQLPTFLK--AGRAPVISGMPPYG---LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPK  194 (262)
T ss_pred             cc-ccHHHHHHHHH--CCCeEEEeCCcCCC---eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCC
Confidence            11 11256888888  89999999996533   223334443      89999999999999999999999999999999


Q ss_pred             chhHhhhhhhhhhHHhhhhhhcccccccccccceeeec--ccceEEeeeccc
Q 020132          158 KVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY--DIPIVIRNIFNL  207 (330)
Q Consensus       158 ~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~--~i~v~i~~~~~~  207 (330)
                      .+|+++++++++++++.++.. +..+|...+...+..+  .++++|.|+..|
T Consensus       195 ~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~  245 (262)
T cd04255         195 KNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNARHVKEVQIVNGLVP  245 (262)
T ss_pred             CCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHhCCCCcEEEEeCCCC
Confidence            999999999999988877641 2234655444444422  258999998755

The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).

>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis

Probab=99.65  E-value=1.3e-16  Score=150.22  Aligned_cols=167  Identities=18%  Similarity=0.222  Sum_probs=122.7

Q ss_pred             ceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEee-eeecCC-
Q 020132           37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATG-FIASTP-  114 (330)
Q Consensus        37 ~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G-~i~~~~-  114 (330)
                      -.+.+.|+..-..++...|..+|+++     .++++ +.+.+.+.+ .+....+.++.+++  .|.|||+.| +...+. 
T Consensus        95 qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~ll-t~~d~~~~~-~~~~~~~~l~~lL~--~g~iPVi~~nD~v~~~~  165 (284)
T cd04256          95 RACAAVGQSGLMALYEAMFTQYGITV-----AQVLV-TKPDFYDEQ-TRRNLNGTLEELLR--LNIIPIINTNDAVSPPP  165 (284)
T ss_pred             HHHHHcccHHHHHHHHHHHHHcCCcH-----HHeee-eccccccHH-HHHHHHHHHHHHHH--CCCEEEEeCCCcccccc
Confidence            34667888888888888898888875     56544 544444322 12234577888887  889999996 332221 


Q ss_pred             ----CCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh-----ccccccc
Q 020132          115 ----DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGANVLH  185 (330)
Q Consensus       115 ----~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~-----~g~~v~~  185 (330)
                          +|+..+ ..+++|.+|+++|.+++|+.++++|||||||++||+ .|+++++++++..+..++..     .|.++|.
T Consensus       166 ~~~~~~~~~~-~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~  243 (284)
T cd04256         166 EPDEDLQGVI-SIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGME  243 (284)
T ss_pred             cccccccccc-cccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCcH
Confidence                122211 124689999999999999999999999999999997 58999999999877665532     3578999


Q ss_pred             cc--ccceeeecccceEEeeeccc---------cCceeEe
Q 020132          186 PR--TIIPVMRYDIPIVIRNIFNL---------SVPGIMI  214 (330)
Q Consensus       186 p~--a~~~a~~~~i~v~i~~~~~~---------~~~GT~I  214 (330)
                      |+  ++..|.++|++++|.|+..|         +..||+|
T Consensus       244 ~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~  283 (284)
T cd04256         244 AKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF  283 (284)
T ss_pred             HHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEe
Confidence            84  88888899999999998655         2457776

G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.

>PTZ00489 glutamate 5-kinase; Provisional

Probab=99.65  E-value=3.1e-16  Score=145.97  Aligned_cols=164  Identities=18%  Similarity=0.235  Sum_probs=116.8

Q ss_pred             eccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCccc
Q 020132           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT  120 (330)
Q Consensus        41 ~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~  120 (330)
                      +.|...-..++...|.++|+++.     ++.++ ...+. ....+....+.++++++  .|.|||+.|. ......+.. 
T Consensus        77 aiGq~~L~~~y~~~f~~~~~~~a-----qiLlt-~~d~~-~~~~~~n~~~~l~~lL~--~g~VPIinen-d~~~~~e~~-  145 (264)
T PTZ00489         77 SMGQPLLMHMYYTELQKHGILCA-----QMLLA-AYDLD-SRKRTINAHNTIEVLIS--HKVIPIINEN-DATALHELV-  145 (264)
T ss_pred             HhCHHHHHHHHHHHHHhCCCeEE-----Eeeee-ccccc-cchhhHHHHHHHHHHHH--CCCEEEECCC-CCcccceeE-
Confidence            34443444557788888998873     33322 22221 12234456788999998  7999999883 111112322 


Q ss_pred             ccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhh---hhhhhhHHhhhhh----hcccccccc--cccce
Q 020132          121 LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI---LRTLSYQEAWEMS----YFGANVLHP--RTIIP  191 (330)
Q Consensus       121 lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~---i~~is~~e~~~l~----~~g~~v~~p--~a~~~  191 (330)
                        .|++|.+|+++|..++|+.++++|||||||++||+.+|+|++   ++++++++.....    ..+.++|.+  .++..
T Consensus       146 --~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~  223 (264)
T PTZ00489        146 --FGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQF  223 (264)
T ss_pred             --eCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHH
Confidence              356899999999999999999999999999999999999998   7788877664332    245688988  48888


Q ss_pred             eeecccceEEeeecccc-----------CceeEeeCC
Q 020132          192 VMRYDIPIVIRNIFNLS-----------VPGIMICRP  217 (330)
Q Consensus       192 a~~~~i~v~i~~~~~~~-----------~~GT~I~~~  217 (330)
                      |.++|++++|.|+..|+           ..||+|.+.
T Consensus       224 a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~  260 (264)
T PTZ00489        224 LLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPR  260 (264)
T ss_pred             HHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeec
Confidence            88999999999986442           258988653

>PLN02418 delta-1-pyrroline-5-carboxylate synthase

Probab=99.64  E-value=1.8e-16  Score=166.11  Aligned_cols=168  Identities=15%  Similarity=0.226  Sum_probs=125.5

Q ss_pred             eeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeee-eecCCCC
Q 020132           38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGF-IASTPDN  116 (330)
Q Consensus        38 ~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~-i~~~~~g  116 (330)
                      .++|+||.++.+++...|++.|+     ++.+++ .+++.+++.+. +....+.++.+++  .|.|||+.|. ...+..+
T Consensus        95 a~aa~Gq~~l~~~~~~~f~~~g~-----~~~qil-lT~~~~~~~~~-~~~~~~~l~~ll~--~g~iPVv~~nd~v~~~~~  165 (718)
T PLN02418         95 ACAAVGQSELMALYDTLFSQLDV-----TASQLL-VTDSDFRDPDF-RKQLSETVESLLD--LRVIPIFNENDAVSTRRA  165 (718)
T ss_pred             HHHHhhHHHHHHHHHHHHHHcCC-----eEEEEE-ecHhHhcchhH-hHhHHHHHHHHHH--CCCEEEEcCCCCcccccc
Confidence            67999999999999999999999     456664 45454543221 2334578888888  7899999773 2111111


Q ss_pred             C----cccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhh-hhh-----cccccccc
Q 020132          117 I----PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE-MSY-----FGANVLHP  186 (330)
Q Consensus       117 ~----~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~-l~~-----~g~~v~~p  186 (330)
                      .    ...+  +++|++|+++|.+++|+.++|+|||||||++||+ .++++++++++..+... +..     .+.++|.|
T Consensus       166 ~~~~~~~~~--~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~  242 (718)
T PLN02418        166 PYEDSSGIF--WDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTA  242 (718)
T ss_pred             ccccccCee--cCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHH
Confidence            0    0112  3689999999999999999999999999999998 48999999997655432 221     35689999


Q ss_pred             --cccceeeecccceEEeeeccc---------cCceeEeeCC
Q 020132          187 --RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICRP  217 (330)
Q Consensus       187 --~a~~~a~~~~i~v~i~~~~~~---------~~~GT~I~~~  217 (330)
                        .++..|.++|++++|.|+..+         +..||+|.+.
T Consensus       243 Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  284 (718)
T PLN02418        243 KVKAAVNAASAGIPVVITSGYALDNIRKVLRGERVGTLFHQD  284 (718)
T ss_pred             HHHHHHHHHHCCCcEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence              588888899999999998654         2469999764

>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]

Probab=99.63  E-value=4.1e-16  Score=147.35  Aligned_cols=167  Identities=17%  Similarity=0.291  Sum_probs=132.9

Q ss_pred             ceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCC
Q 020132           37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN  116 (330)
Q Consensus        37 ~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g  116 (330)
                      -.+.|.|...-...+...|..+|+++     .++.+ |.+.+.+ +-.|...+..+..+++  .|.|||+      |+|.
T Consensus        75 QA~AAVGQ~~Lm~~y~~~f~~~g~~v-----~QiLL-Tr~D~~~-r~ry~Nar~Tl~~Ll~--~gvVPII------NEND  139 (369)
T COG0263          75 QAAAAVGQVRLMQLYEELFARYGIKV-----GQILL-TRDDFSD-RRRYLNARNTLSALLE--LGVVPII------NEND  139 (369)
T ss_pred             HHHHHhCHHHHHHHHHHHHHhcCCee-----eEEEe-ehhhhhh-HHHHHHHHHHHHHHHH--CCceeee------cCCC
Confidence            34677888888889999999999975     55554 4333322 1234556788888898  8999997      5665


Q ss_pred             Cccc--ccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh--HHhhhhhh-----ccccccccc
Q 020132          117 IPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHPR  187 (330)
Q Consensus       117 ~~~~--lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~~p~  187 (330)
                      -+.+  +-+|++|.+++++|...+||.|+++||+||+||+||+.+|+|+++++++-  .|...++.     +|.++|..+
T Consensus       140 tva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TK  219 (369)
T COG0263         140 TVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTK  219 (369)
T ss_pred             ceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHH
Confidence            5444  45678899999999999999999999999999999999999999999873  46666664     677899984


Q ss_pred             --ccceeeecccceEEeeecccc---------CceeEeeCCC
Q 020132          188 --TIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP  218 (330)
Q Consensus       188 --a~~~a~~~~i~v~i~~~~~~~---------~~GT~I~~~~  218 (330)
                        |++.|.++|+++.|.++..|.         ..||++.+..
T Consensus       220 l~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~GT~F~~~~  261 (369)
T COG0263         220 LEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLFEPQA  261 (369)
T ss_pred             HHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCCccEEecCC
Confidence              899999999999999998763         4699998653

>COG1608 Predicted archaeal kinase [General function prediction only]

Probab=99.59  E-value=2.6e-15  Score=135.18  Aligned_cols=155  Identities=18%  Similarity=0.160  Sum_probs=115.8

Q ss_pred             HHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhh-HHHHHHhhccCCCccEEEeeeeecCCCCCcccccccCc
Q 020132           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES-EKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGS  126 (330)
Q Consensus        48 a~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~-~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggs  126 (330)
                      +..++..|.+.|++++...|.++. +.++++     .+  + -+.++.+++  .+.|||++|++..+.++...+++   +
T Consensus        83 ~~~V~~~l~~~Gv~av~~~P~s~~-~~~gr~-----~~--~~l~~i~~~l~--~gfvPvl~GDVv~d~~~g~~IiS---G  149 (252)
T COG1608          83 NSIVVDALLDAGVRAVSVVPISFS-TFNGRI-----LY--TYLEAIKDALE--KGFVPVLYGDVVPDDDNGYEIIS---G  149 (252)
T ss_pred             HHHHHHHHHhcCCccccccCccee-ecCCce-----ee--chHHHHHHHHH--cCCEeeeecceEEcCCCceEEEe---c
Confidence            446788999999999999999886 334432     22  2 377888888  89999999999999874445554   4


Q ss_pred             chhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh--cccccccc--cccceeeecccceEEe
Q 020132          127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--FGANVLHP--RTIIPVMRYDIPIVIR  202 (330)
Q Consensus       127 D~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~--~g~~v~~p--~a~~~a~~~~i~v~i~  202 (330)
                      |..+.+||+.|++++++|+|||||||+.||.++|+++.++++....+..=..  .=.++|--  +++..+.+++.+++++
T Consensus       150 DdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~  229 (252)
T COG1608         150 DDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIF  229 (252)
T ss_pred             cHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEE
Confidence            9999999999999999999999999999999999999998877653322111  00234543  3444445566779999


Q ss_pred             eeccc---------cCceeEee
Q 020132          203 NIFNL---------SVPGIMIC  215 (330)
Q Consensus       203 ~~~~~---------~~~GT~I~  215 (330)
                      |+..|         +..||+|.
T Consensus       230 ng~~~~ni~~~l~G~~vGT~I~  251 (252)
T COG1608         230 NGNKPENIYRALRGENVGTRID  251 (252)
T ss_pred             CCCCHHHHHHHhcCCCCceEec
Confidence            98654         46789884

>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]

Probab=99.55  E-value=6.9e-15  Score=135.75  Aligned_cols=150  Identities=17%  Similarity=0.201  Sum_probs=122.8

Q ss_pred             ccchhHHHHHHHHHHhcCCccccccceeEEEECCCC--------CC---C-CCCCchhhHHHHHHhhccCCCccEEEeee
Q 020132           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTS--------SN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGF  109 (330)
Q Consensus        42 ~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~--------~g---~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~  109 (330)
                      .|..  .+-+++.|...|..|+++++.+-.+++..+        +|   + ..+|.    +.++.+++  ++.|||+++.
T Consensus        80 ~G~v--Nk~iva~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~----~~i~~ll~--~~~IpViapi  151 (265)
T COG0548          80 GGTV--NKEIVARLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNP----ELIERLLD--NGAIPVIAPI  151 (265)
T ss_pred             HHHH--HHHHHHHHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECH----HHHHHHHh--CCCceEEecc
Confidence            4455  678899999999999999998844442221        22   1 23444    78888888  8899999996


Q ss_pred             eecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc--cccccc-
Q 020132          110 IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP-  186 (330)
Q Consensus       110 i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p-  186 (330)
                       +.+.+|++.++.   +|++|+.+|.+|+|++++++|||+||++..|.  +  +++++++.+|+.++...|  ..+|.| 
T Consensus       152 -a~~~~G~~~Nvn---aD~~A~~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~K  223 (265)
T COG0548         152 -AVDEDGETLNVN---ADTAAGALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPK  223 (265)
T ss_pred             -eECCCCcEEeeC---HHHHHHHHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHH
Confidence             889999999984   89999999999999999999999999998755  2  689999999999999887  579999 


Q ss_pred             -cccceeeecccc-eEEeeeccc
Q 020132          187 -RTIIPVMRYDIP-IVIRNIFNL  207 (330)
Q Consensus       187 -~a~~~a~~~~i~-v~i~~~~~~  207 (330)
                       +++..|.+.|++ ++|.|+..+
T Consensus       224 v~~a~~A~~~Gv~~v~ii~g~~~  246 (265)
T COG0548         224 VEAALEALESGVRRVHIISGRVP  246 (265)
T ss_pred             HHHHHHHHHhCCCeEEEecCCCc
Confidence             477778889995 999998654

>cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=99.49  E-value=4.6e-14  Score=104.29  Aligned_cols=64  Identities=23%  Similarity=0.363  Sum_probs=62.1

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      +++|+++|.+|. ++|+.+++|++|++.||++.|++|++|+++|||+|+++|.+++++.||+.|+
T Consensus         2 ~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f~   65 (66)
T cd04915           2 VAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAALV   65 (66)
T ss_pred             EEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHHh
Confidence            689999999995 8999999999999999999999999999999999999999999999999987

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas

>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals

Probab=99.48  E-value=8.2e-14  Score=130.03  Aligned_cols=140  Identities=14%  Similarity=0.130  Sum_probs=113.5

Q ss_pred             HHHHHHHHHhcCCccccccceeEEEE-----CCCCCCC-CCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccc
Q 020132           48 AQMLAAVVRKNGIDCKWMDTREVLIV-----NPTSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL  121 (330)
Q Consensus        48 a~~~~~~L~~~Gi~a~~l~~~~~~~~-----~~~~~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~l  121 (330)
                      ...+++.|++.|++|+++.+.+.++.     +.+.-|. .++|.    +.++.+++  .|.|||+++ ++.+.+|++.++
T Consensus       100 n~~Lv~~L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~~Vd~----~~I~~lL~--~g~IPVisp-lg~~~~G~~~Ni  172 (271)
T cd04236         100 CKTLVEALQANSAAAHPLFSGESVLQAEEPEPGASKGPSVSVDT----ELLQWCLG--SGHIPLVCP-IGETSSGRSVSL  172 (271)
T ss_pred             HHHHHHHHHhCCCCeeeecCccceEEEEEcccCCccceEEEECH----HHHHHHHh--CCCeEEECC-ceECCCCCEEEE
Confidence            55688999999999999998753332     1112233 34666    88999998  899999999 489999999998


Q ss_pred             cccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh-HHhhhhhhcc--cccc---cc--cccceee
Q 020132          122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVL---HP--RTIIPVM  193 (330)
Q Consensus       122 grggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~-~e~~~l~~~g--~~v~---~p--~a~~~a~  193 (330)
                      +   +|..|+.+|.+|+|++++|+||++||++.+      .+++++++. +|+.+|...|  .++|   .|  +++..++
T Consensus       173 N---aD~~A~~lA~aL~A~KLIfltd~~GV~~~~------g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l  243 (271)
T cd04236         173 D---SSEVTTAIAKALQPIKVIFLNRSGGLRDQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNAL  243 (271)
T ss_pred             C---HHHHHHHHHHHcCCCEEEEEeCCcceECCC------CCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhc
Confidence            4   899999999999999999999999999742      578999995 9999999887  3788   55  3566677


Q ss_pred             ecccceEEee
Q 020132          194 RYDIPIVIRN  203 (330)
Q Consensus       194 ~~~i~v~i~~  203 (330)
                      ..+++++|.+
T Consensus       244 ~~g~sv~I~~  253 (271)
T cd04236         244 PSMSSAVITS  253 (271)
T ss_pred             ccCCeEEEeC
Confidence            8899988887

Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).

>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase

Probab=99.45  E-value=5.8e-14  Score=147.38  Aligned_cols=144  Identities=13%  Similarity=0.197  Sum_probs=105.1

Q ss_pred             ccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccc---------cCcchhHHHH
Q 020132           63 KWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKR---------DGSDFSAAIM  133 (330)
Q Consensus        63 ~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgr---------ggsD~~A~~l  133 (330)
                      ..+.+.++++ +++.+.+.+. +....+.++.+++  .|.|||+.|      ++.+++.++         +++|++|+++
T Consensus       107 ~~i~~aQ~Ll-t~~d~~~~~~-~~~~~~~l~~lL~--~g~iPVin~------nD~V~~~~~~~~~~~g~~~d~D~lAa~l  176 (715)
T TIGR01092       107 LDITAAQILV-TDLDFRDEQF-RRQLNETVHELLR--MNVVPVVNE------NDAVSTRAAPYSDSQGIFWDNDSLAALL  176 (715)
T ss_pred             cCCeeEEEEe-chhhcccHHH-HHHHHHHHHHHHH--CCCEEEEcC------CCcccccccccccccceecchHHHHHHH
Confidence            3666688754 5444432111 2234578888888  789999975      122333332         3479999999


Q ss_pred             HHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhh-hhhh-----cccccccc--cccceeeecccceEEeeec
Q 020132          134 GALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-EMSY-----FGANVLHP--RTIIPVMRYDIPIVIRNIF  205 (330)
Q Consensus       134 A~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~-~l~~-----~g~~v~~p--~a~~~a~~~~i~v~i~~~~  205 (330)
                      |.+++|+.++++|||||||++||+ .|+++++++++..+.. ++..     .+.++|.+  +++..|.++|++++|.|+.
T Consensus       177 A~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~  255 (715)
T TIGR01092       177 ALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGT  255 (715)
T ss_pred             HHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCC
Confidence            999999999999999999999997 5899999999875444 3322     34678988  5788888999999999986


Q ss_pred             cc---------cCceeEeeCC
Q 020132          206 NL---------SVPGIMICRP  217 (330)
Q Consensus       206 ~~---------~~~GT~I~~~  217 (330)
                      .+         +..||+|.+.
T Consensus       256 ~~~~l~~~l~g~~~GT~~~~~  276 (715)
T TIGR01092       256 APKNITKVVEGKKVGTLFHED  276 (715)
T ss_pred             CcchHHHHhcCCCCceEeccc
Confidence            54         2469999664

This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.

>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=99.44  E-value=1.8e-13  Score=100.65  Aligned_cols=63  Identities=24%  Similarity=0.360  Sum_probs=60.7

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ++|++||. +...+|+++++|++|+++||++.||+|++|+.+|||+|+++|.+++++.||++|+
T Consensus         2 a~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~f~   64 (65)
T cd04918           2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFF   64 (65)
T ss_pred             cEEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHh
Confidence            68999999 7788999999999999999999999999999999999999999999999999985

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP)

Probab=99.43  E-value=2.9e-13  Score=125.26  Aligned_cols=140  Identities=11%  Similarity=0.140  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhcCCccccccceeEEEEC---CCCC---CC-CCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCccc
Q 020132           48 AQMLAAVVRKNGIDCKWMDTREVLIVN---PTSS---NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT  120 (330)
Q Consensus        48 a~~~~~~L~~~Gi~a~~l~~~~~~~~~---~~~~---g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~  120 (330)
                      .+.+.+.|.++|++|+++.+..+ ...   ...+   |. .++|.    +.++.+++  .|.|||++|+ +.+..|++.+
T Consensus        77 n~~iv~~l~~~g~~a~~l~~~~~-~a~~~~~~d~g~~G~v~~i~~----~~i~~~L~--~g~IPVi~p~-~~~~~g~~~n  148 (248)
T cd04252          77 NLKLVEALERNGARARPITSGVF-EAEYLDKDKYGLVGKITGVNK----APIEAAIR--AGYLPILTSL-AETPSGQLLN  148 (248)
T ss_pred             HHHHHHHHHhCCCCcccccCceE-EEEECcCccCCccCceeeECH----HHHHHHHH--CCCeEEECCc-eECCCCCEEE
Confidence            45567789999999999998744 221   1112   22 34566    88999998  8999999996 7788888888


Q ss_pred             ccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh-HHhhhhhhcc--ccccccc--ccceeeec
Q 020132          121 LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-QEAWEMSYFG--ANVLHPR--TIIPVMRY  195 (330)
Q Consensus       121 lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~-~e~~~l~~~g--~~v~~p~--a~~~a~~~  195 (330)
                      ++   +|..|+.+|.+|+|++++|+|||+|||+.+      .+++++++. +++.++...|  .++|.|+  ++..+.++
T Consensus       149 vn---aD~~A~~lA~aL~a~kli~ltdv~GV~~~~------g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~  219 (248)
T cd04252         149 VN---ADVAAGELARVLEPLKIVFLNETGGLLDGT------GKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDT  219 (248)
T ss_pred             EC---HHHHHHHHHHHcCCCeEEEEECCcccCCCC------CCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHh
Confidence            74   899999999999999999999999999742      568999986 4676777655  3678885  33344444


Q ss_pred             --cc-ceEEeee
Q 020132          196 --DI-PIVIRNI  204 (330)
Q Consensus       196 --~i-~v~i~~~  204 (330)
                        ++ .++|.+.
T Consensus       220 ~~~~~~v~i~~~  231 (248)
T cd04252         220 LPRSSSVSITSP  231 (248)
T ss_pred             CCCceEEEEECC
Confidence              33 4666653

The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th

>cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3

Probab=99.42  E-value=3.4e-13  Score=98.81  Aligned_cols=65  Identities=26%  Similarity=0.412  Sum_probs=63.0

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      +++|+++|.++.+.+++.+++|+.|+++||+++|++|++|+.+++|++++++.+++++.||+.|+
T Consensus         1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~~a~~~lh~~~~   65 (66)
T cd04919           1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIHTNLL   65 (66)
T ss_pred             CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHh
Confidence            57999999999999999999999999999999999999999999999999999999999999986

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP

Probab=99.42  E-value=5.9e-13  Score=126.07  Aligned_cols=120  Identities=19%  Similarity=0.222  Sum_probs=90.4

Q ss_pred             HHHHHhhccCCCccEEEeee----eecCCCCCccccc-ccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGF----IASTPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~----i~~~~~g~~~~lg-rggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~  164 (330)
                      +.++.+++  .|.|||++|.    +..+ +|...+.. ..+.|.+|+++|..++|+.++++|||||||+++|  .|++++
T Consensus       172 ~~I~~Ll~--~g~IpI~~GggGiPv~~~-~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~  246 (308)
T cd04235         172 EAIKTLVD--NGVIVIAAGGGGIPVVRE-GGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKA  246 (308)
T ss_pred             HHHHHHHH--CCCEEEEECCCccCEEEc-CCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeE
Confidence            56777887  8999999987    3322 23322210 2356999999999999999999999999999654  378999


Q ss_pred             hhhhhhHHhhhhhh---ccccccccc---ccceeeecccceEEeeeccc-----cCceeEe
Q 020132          165 LRTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMI  214 (330)
Q Consensus       165 i~~is~~e~~~l~~---~g~~v~~p~---a~~~a~~~~i~v~i~~~~~~-----~~~GT~I  214 (330)
                      +++++++|+.++..   ++.++|.|+   |++.+.+.+.+++|.+..+.     ...||+|
T Consensus       247 i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~~~~i~~aL~G~~GT~I  307 (308)
T cd04235         247 LEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITSLENAEAALEGKAGTVI  307 (308)
T ss_pred             cCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECCHHHHHHHHCCCCCeEE
Confidence            99999999999885   456899997   66777666778888775321     1258876

Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).

>PRK12353 putative amino acid kinase; Reviewed

Probab=99.39  E-value=7.9e-13  Score=126.19  Aligned_cols=121  Identities=21%  Similarity=0.224  Sum_probs=91.1

Q ss_pred             HHHHHhhccCCCccEEEeee--ee-cCCCCCcccc-cccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGF--IA-STPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~--i~-~~~~g~~~~l-grggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i  165 (330)
                      +.++.+|+  .|.|||++|+  ++ .++++.+.+. ..+++|.+|+++|.+|+|++++++|||||||+++|+  |+++++
T Consensus       176 ~~i~~lL~--~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~~--~~a~~i  251 (314)
T PRK12353        176 EAIKTLVD--AGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFGK--PNQKKL  251 (314)
T ss_pred             HHHHHHHH--CCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCCC--CCCeEC
Confidence            78888888  8999999987  11 1233332220 024679999999999999999999999999997663  789999


Q ss_pred             hhhhhHHhhhhhh---ccccccccc--cc-cee-eecccceEEeeecc------ccCceeEee
Q 020132          166 RTLSYQEAWEMSY---FGANVLHPR--TI-IPV-MRYDIPIVIRNIFN------LSVPGIMIC  215 (330)
Q Consensus       166 ~~is~~e~~~l~~---~g~~v~~p~--a~-~~a-~~~~i~v~i~~~~~------~~~~GT~I~  215 (330)
                      ++++++++.++..   .+.++|.|+  ++ +.+ .+.+++++|.+...      .+ .||+|.
T Consensus       252 ~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~-~GT~i~  313 (314)
T PRK12353        252 DEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGK-AGTVIV  313 (314)
T ss_pred             cCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCC-CCeEec
Confidence            9999999988874   345789884  34 444 47789999987532      22 688874

>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=99.38  E-value=9.1e-13  Score=96.27  Aligned_cols=65  Identities=31%  Similarity=0.556  Sum_probs=62.8

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      +++|+++|.++...+++.+++|+.|+++||+++|++|+.|+.+++|++++++.++++++||+.|+
T Consensus         1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~   65 (66)
T cd04922           1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF   65 (66)
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999999998899999999999999999999999986

This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa

>cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=99.37  E-value=1.2e-12  Score=96.00  Aligned_cols=63  Identities=30%  Similarity=0.524  Sum_probs=60.0

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      +++|+++|.+|...||+++|+|++|+++||++.+++|  |+++|||+|+++|.++++++||++|+
T Consensus         1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~--Se~~is~~v~~~~~~~av~~Lh~~f~   63 (64)
T cd04937           1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD--SHTTISCLVSEDDVKEAVNALHEAFE   63 (64)
T ss_pred             CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc--CccEEEEEEcHHHHHHHHHHHHHHhc
Confidence            4799999999999999999999999999999999884  79999999999999999999999984

This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th

>cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC)

Probab=99.35  E-value=1.3e-12  Score=95.57  Aligned_cols=62  Identities=19%  Similarity=0.304  Sum_probs=57.9

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ++|++||.+|...+|+.+++|++|++.  +|.+++|++|+++|||+|+++|.+++++.||+.|+
T Consensus         1 a~VsvVG~g~~~~~gv~~~~~~~L~~~--~i~~i~~~~s~~~is~vv~~~d~~~av~~LH~~f~   62 (63)
T cd04920           1 AAVSLVGRGIRSLLHKLGPALEVFGKK--PVHLVSQAANDLNLTFVVDEDQADGLCARLHFQLI   62 (63)
T ss_pred             CEEEEECCCcccCccHHHHHHHHHhcC--CceEEEEeCCCCeEEEEEeHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999886  56668888999999999999999999999999997

This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH)

Probab=99.35  E-value=2.4e-12  Score=97.96  Aligned_cols=78  Identities=50%  Similarity=0.754  Sum_probs=74.8

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHHhccCcccccCC
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQHSS  318 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~~~~~~i~~~~~  318 (330)
                      +++|+++|.++...+++.+++|+.|++++|+++|++|++++.++||+++.++..++++.||+.|+.+++++.+.||..
T Consensus         1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~~~~~~~l~~~~~~~~~~~~~~~~~~   78 (80)
T cd04921           1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADKALEALEEEFALEIKAGLIKPIEV   78 (80)
T ss_pred             CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHHhhhhhCcccceEe
Confidence            578999999999999999999999999999999999998899999999999999999999999999999999999864

This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat

>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts

Probab=99.34  E-value=1.1e-12  Score=123.47  Aligned_cols=147  Identities=16%  Similarity=0.187  Sum_probs=109.4

Q ss_pred             ccchhHHHHHHHHHHhcCCccccccceeEEEEC-----CC--------CC---CC-CCCCchhhHHHHHHhhccCCCccE
Q 020132           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVN-----PT--------SS---NQ-VDPDFSESEKRLEKWFSQSPSNTI  104 (330)
Q Consensus        42 ~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~-----~~--------~~---g~-~~~~~~~~~~~i~~~l~~~~~~Vp  104 (330)
                      .|+.  ...+.+.|+. |++++++++..+...+     ..        .+   |. ..++.    +.++.+++  .|.||
T Consensus        94 ~g~v--~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~----~~i~~lL~--~g~ip  164 (280)
T cd04237          94 AGAV--RLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDA----DAIRRQLD--QGSIV  164 (280)
T ss_pred             HHHH--HHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcH----HHHHHHHH--CCCEE
Confidence            3555  5556777754 9998877543322210     00        11   11 22444    88899998  78999


Q ss_pred             EEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc---c
Q 020132          105 IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG---A  181 (330)
Q Consensus       105 Vv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g---~  181 (330)
                      |+++. +.+.+|+..+++   +|..|+.||.+|+|++++|+|||||||++      +++++++++.+|+.++...|   .
T Consensus       165 v~~~~-g~~~~g~~lnvn---aD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~  234 (280)
T cd04237         165 LLSPL-GYSPTGEVFNLS---MEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLT  234 (280)
T ss_pred             EECCc-eECCCCCEEeeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCC
Confidence            99885 888889988874   79999999999999999999999999974      26799999999999998765   4


Q ss_pred             cccccc--ccceeeeccc-ceEEeeeccc
Q 020132          182 NVLHPR--TIIPVMRYDI-PIVIRNIFNL  207 (330)
Q Consensus       182 ~v~~p~--a~~~a~~~~i-~v~i~~~~~~  207 (330)
                      .+|.|+  ++..+.++|+ +++|.++..|
T Consensus       235 ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~  263 (280)
T cd04237         235 NDTARLLQAAIEACRGGVPRVHLISYAED  263 (280)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence            789995  5555567799 5999988654

Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).

>PRK05279 N-acetylglutamate synthase; Validated

Probab=99.34  E-value=1.8e-12  Score=129.24  Aligned_cols=153  Identities=15%  Similarity=0.158  Sum_probs=114.2

Q ss_pred             HHHHHHHHHhcCCccccccceeEEEECCC-------------CCCC----CCCCchhhHHHHHHhhccCCCccEEEeeee
Q 020132           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPT-------------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFI  110 (330)
Q Consensus        48 a~~~~~~L~~~Gi~a~~l~~~~~~~~~~~-------------~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i  110 (330)
                      ...+.+.|+ +|++++++.+..+...+..             .+|.    ..++.    +.++.+++  .|.|||+++ +
T Consensus       105 ~~~l~~~l~-~g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~----~~i~~ll~--~g~ipV~~~-i  176 (441)
T PRK05279        105 RLDIEARLS-MGLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDA----EAIRRQLD--SGAIVLLSP-L  176 (441)
T ss_pred             HHHHHHHHh-ccCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeH----HHHHHHHH--CCCeEEECC-c
Confidence            555677774 5999988876654333211             1111    12344    88898998  789999955 5


Q ss_pred             ecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh---cc--ccccc
Q 020132          111 ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FG--ANVLH  185 (330)
Q Consensus       111 ~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~---~g--~~v~~  185 (330)
                      +.+.+|++.+++   +|.+|+.||.+|+|++++|+|||+|||++      +++++++++.+++.++..   .|  .++|.
T Consensus       177 ~~~~~g~~~ni~---~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~  247 (441)
T PRK05279        177 GYSPTGESFNLT---MEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTA  247 (441)
T ss_pred             eECCCCCEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHH
Confidence            888889888774   79999999999999999999999999953      368999999999988875   34  47888


Q ss_pred             cc--ccceeeeccc-ceEEeeeccc----------cCceeEeeCC
Q 020132          186 PR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICRP  217 (330)
Q Consensus       186 p~--a~~~a~~~~i-~v~i~~~~~~----------~~~GT~I~~~  217 (330)
                      |+  ++..+.++|+ +++|.++..|          +..||.|...
T Consensus       248 ~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~  292 (441)
T PRK05279        248 RFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME  292 (441)
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence            85  4445556799 5999987544          2469999865

>cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=99.33  E-value=2.7e-12  Score=93.90  Aligned_cols=63  Identities=37%  Similarity=0.604  Sum_probs=60.2

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      +++|+++|.+|...+++.+++|++|++  +++.+++|++|+++++|+|+++|.+++++.||+.|+
T Consensus         1 ~alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~f~   63 (64)
T cd04917           1 LALVALIGNDISETAGVEKRIFDALED--INVRMICYGASNHNLCFLVKEEDKDEVVQRLHSRLF   63 (64)
T ss_pred             CeEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEecCccEEEEEEeHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999975  899999999999999999999999999999999987

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00746 arcC carbamate kinase

Probab=99.30  E-value=8e-12  Score=118.81  Aligned_cols=175  Identities=17%  Similarity=0.184  Sum_probs=114.3

Q ss_pred             cceeeeccchhHHHHHHHHHH----hcCCccccccceeEEEECCCC--CCCC----------------------------
Q 020132           36 TDFVVGHGELWSAQMLAAVVR----KNGIDCKWMDTREVLIVNPTS--SNQV----------------------------   81 (330)
Q Consensus        36 ~~~v~~~GE~~sa~~~~~~L~----~~Gi~a~~l~~~~~~~~~~~~--~g~~----------------------------   81 (330)
                      .+.+.|.|+-+-+.++...|+    ++|++........-...+.+.  |.++                            
T Consensus        74 ~~~~~A~~qg~lg~~~~~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~  153 (310)
T TIGR00746        74 LDVLGAMSQGMIGYMLQQALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDA  153 (310)
T ss_pred             chHHHHhhHHHHHHHHHHHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecC
Confidence            477888888887888888777    888766443332222233222  2110                            


Q ss_pred             ---------CCCch--hhHHHHHHhhccCCCccEEEeee--eec-CCCCCcccc-cccCcchhHHHHHHHHhhceeEEEe
Q 020132           82 ---------DPDFS--ESEKRLEKWFSQSPSNTIIATGF--IAS-TPDNIPTTL-KRDGSDFSAAIMGALLRAHQVTIWT  146 (330)
Q Consensus        82 ---------~~~~~--~~~~~i~~~l~~~~~~VpVv~G~--i~~-~~~g~~~~l-grggsD~~A~~lA~~l~A~~l~~~t  146 (330)
                               .+.+.  --.+.++.+|+  .|.|+|.+|-  ++. +++|.+... -.++.|.+|+.+|.+|+||.++++|
T Consensus       154 ~~~~rrvv~sp~p~~iv~~~~I~~LL~--~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLT  231 (310)
T TIGR00746       154 GRGWRRVVPSPRPKDIVEAETIKTLVE--NGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILT  231 (310)
T ss_pred             CCcceEeecCCCchhhccHHHHHHHHH--CCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEe
Confidence                     01110  01257888888  6776665543  111 233432110 0246899999999999999999999


Q ss_pred             ecccccccCccchhHhhhhhhhhhHHhhhhhh---ccccccccc---ccceeeecccceEEeeec------cccCceeEe
Q 020132          147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIF------NLSVPGIMI  214 (330)
Q Consensus       147 dv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~---~g~~v~~p~---a~~~a~~~~i~v~i~~~~------~~~~~GT~I  214 (330)
                      ||||||+++ + .|+++++++++++|+.++..   ++.++|.|+   |++.+.+.+++++|.+..      +.+ .||+|
T Consensus       232 DVdGVy~~~-~-~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I  308 (310)
T TIGR00746       232 DVDAVYINY-G-KPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRV  308 (310)
T ss_pred             CCCceeCCC-C-CCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEE
Confidence            999999863 3 47899999999999998874   456788883   446666667889888743      223 68887


Q ss_pred             e
Q 020132          215 C  215 (330)
Q Consensus       215 ~  215 (330)
                      .
T Consensus       309 ~  309 (310)
T TIGR00746       309 T  309 (310)
T ss_pred             e
Confidence            4

The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.

>cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=99.30  E-value=5.8e-12  Score=91.97  Aligned_cols=65  Identities=32%  Similarity=0.452  Sum_probs=62.7

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      +++|+++|.++...+++.+++|+.|++.||+++|++|+.++.+++|+++++|..++++.||++|+
T Consensus         1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~   65 (66)
T cd04916           1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFF   65 (66)
T ss_pred             CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence            47899999999999999999999999999999999998899999999999999999999999987

This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2)

Probab=99.28  E-value=9.3e-12  Score=90.77  Aligned_cols=64  Identities=47%  Similarity=0.734  Sum_probs=61.9

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      +++|+++|.++...+++.+++|+.|++.||+++|++|+.++.+++|+++++|.+++.+.||+.|
T Consensus         1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh~~~   64 (66)
T cd04924           1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEF   64 (66)
T ss_pred             CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHh
Confidence            4799999999999999999999999999999999999889999999999999999999999987

Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase

Probab=99.27  E-value=8.4e-12  Score=124.15  Aligned_cols=116  Identities=13%  Similarity=0.123  Sum_probs=94.3

Q ss_pred             HHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is  169 (330)
                      +.++.+++  .|.|||+++. +.+.+|++.+++   +|..|+.||.+|+|++++|+|||+|||++      +.+++++|+
T Consensus       151 ~~l~~ll~--~g~ipvi~pi-~~~~~g~~~nvn---aD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~  218 (429)
T TIGR01890       151 EGIRRQLD--AGSIVLLSPL-GHSPTGETFNLD---MEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELS  218 (429)
T ss_pred             HHHHHHHH--CCCeEEECCc-ccCCCCCEEEeC---HHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCC
Confidence            88999998  7899999885 888889999884   89999999999999999999999999963      257999999


Q ss_pred             hHHhhhhhhccccc-cccc--ccceeeeccc-ceEEeeeccc----------cCceeEeeCC
Q 020132          170 YQEAWEMSYFGANV-LHPR--TIIPVMRYDI-PIVIRNIFNL----------SVPGIMICRP  217 (330)
Q Consensus       170 ~~e~~~l~~~g~~v-~~p~--a~~~a~~~~i-~v~i~~~~~~----------~~~GT~I~~~  217 (330)
                      .+|+.++....... |.|+  ++..|.+.|+ +++|.++..|          +..||.|...
T Consensus       219 ~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d  280 (429)
T TIGR01890       219 PQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKE  280 (429)
T ss_pred             HHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEecc
Confidence            99988887543334 3674  5566677887 5999997544          3469999764

This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.

>PRK12686 carbamate kinase; Reviewed

Probab=99.25  E-value=6.6e-12  Score=119.10  Aligned_cols=122  Identities=19%  Similarity=0.237  Sum_probs=89.8

Q ss_pred             HHHHHhhccCCCccEEEeee--ee-cCCCCCccccc-ccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGF--IA-STPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~--i~-~~~~g~~~~lg-rggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i  165 (330)
                      +.++.+++  .|.|||.+|.  ++ .++++....+. .+++|.+|+.||.+|+|++++|+|||+|||++ |. .++++++
T Consensus       174 ~~I~~Ll~--~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~-~~-~p~ak~I  249 (312)
T PRK12686        174 DTIRTLVD--GGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN-FN-KPNQQKL  249 (312)
T ss_pred             HHHHHHHH--CCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC-CC-CCCCeEC
Confidence            77888888  8999999876  11 22344333221 35689999999999999999999999999984 55 3789999


Q ss_pred             hhhhhHHhhhhhh---ccccccccc--ccceeee--cccceEEeeeccc-----cCceeEee
Q 020132          166 RTLSYQEAWEMSY---FGANVLHPR--TIIPVMR--YDIPIVIRNIFNL-----SVPGIMIC  215 (330)
Q Consensus       166 ~~is~~e~~~l~~---~g~~v~~p~--a~~~a~~--~~i~v~i~~~~~~-----~~~GT~I~  215 (330)
                      ++++.+|+.++..   ++.++|.|+  |+..+.+  .+.+++|.+..+.     ...||+|.
T Consensus       250 ~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~~GT~I~  311 (312)
T PRK12686        250 DDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITSLEQAKEALAGNAGTHIT  311 (312)
T ss_pred             CccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCCCCeEEe
Confidence            9999999999875   345789995  4444443  3567888875321     12688874

>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria

Probab=99.22  E-value=9.2e-12  Score=111.88  Aligned_cols=148  Identities=19%  Similarity=0.162  Sum_probs=102.2

Q ss_pred             cccceeeeccchhHHHHHHHHHHhcC----------CccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCcc
Q 020132           34 SFTDFVVGHGELWSAQMLAAVVRKNG----------IDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNT  103 (330)
Q Consensus        34 ~~~~~v~~~GE~~sa~~~~~~L~~~G----------i~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~V  103 (330)
                      .....|.+.|..  |+.+-..-.+.|          +-|+.+++.-+.  +  .. ....  ..+...+...+.  .+.|
T Consensus        25 ~~v~iV~GGG~~--A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~--~--~~-~~~~--~~~~~~~~~~~~--~g~i   93 (203)
T cd04240          25 GGVVIVPGGGPF--ADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLA--D--LE-PRLV--ARTLAELTDVLE--RGKI   93 (203)
T ss_pred             CCEEEEcCCcHH--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHh--c--cC-Cccc--cCCHHHHHHHHH--CCCc
Confidence            455678889988  666654444444          444555544321  1  11 1111  233367777776  7899


Q ss_pred             EEEeeeeec----CCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhc
Q 020132          104 IIATGFIAS----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF  179 (330)
Q Consensus       104 pVv~G~i~~----~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~  179 (330)
                      ||+.++ +.    +..++..++   .+|..|+.+|..|+|++++++|||||||++|      +++++++++.|+..    
T Consensus        94 pV~~P~-~~~~~~~~~~~~~~~---ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~~~----  159 (203)
T cd04240          94 AILLPY-RLLLDTDPLPHSWEV---TSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAELLG----  159 (203)
T ss_pred             EEEeCc-hhhcccCCCCccccc---CHHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHhCC----
Confidence            999876 33    223333333   3799999999999999999999999999865      78999999887643    


Q ss_pred             ccccccccccceeeecccceEEeeeccc
Q 020132          180 GANVLHPRTIIPVMRYDIPIVIRNIFNL  207 (330)
Q Consensus       180 g~~v~~p~a~~~a~~~~i~v~i~~~~~~  207 (330)
                       ..++++.+.+.+.+++++++|.|+..|
T Consensus       160 -~~~id~~~~~~~~~~gi~v~I~~g~~~  186 (203)
T cd04240         160 -ETSVDPAFPRLLTKYGIRCYVVNGDDP  186 (203)
T ss_pred             -CCeehhhHHHHHHhCCCeEEEECCCCc
Confidence             556666566777889999999998765

Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.

>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed

Probab=99.19  E-value=2e-11  Score=115.72  Aligned_cols=122  Identities=20%  Similarity=0.178  Sum_probs=90.0

Q ss_pred             HHHHHhhccCCCccEEEeeee---ecCCCCCccccc-ccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFI---ASTPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i---~~~~~g~~~~lg-rggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i  165 (330)
                      +.++.+++  .|.|||++|.-   ..+.+|.+.++. -.+.|.+|+.+|.+|+|++++|+|||||||++ |+ .|+++++
T Consensus       176 ~aI~~LLe--~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i  251 (313)
T PRK12454        176 EVIKALVE--NGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPL  251 (313)
T ss_pred             HHHHHHHH--CCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEc
Confidence            67788888  89999999872   244555544322 13569999999999999999999999999986 43 3788999


Q ss_pred             hhhhhHHhhhhhh---ccccccccc---ccceeeecccceEEeeeccc-----cCceeEee
Q 020132          166 RTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMIC  215 (330)
Q Consensus       166 ~~is~~e~~~l~~---~g~~v~~p~---a~~~a~~~~i~v~i~~~~~~-----~~~GT~I~  215 (330)
                      ++++++|+.++..   ++.+.|.|+   |++.+.+.+.+++|.+..+.     ...||+|.
T Consensus       252 ~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~~GT~I~  312 (313)
T PRK12454        252 DKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIASLEKAVEALEGKTGTRII  312 (313)
T ss_pred             cccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECchHHHHHHHCCCCCeEeC
Confidence            9999999988774   335679884   44555555567888764321     12689885

>PRK06291 aspartate kinase; Provisional

Probab=99.18  E-value=3.6e-11  Score=120.81  Aligned_cols=118  Identities=26%  Similarity=0.396  Sum_probs=89.4

Q ss_pred             cccceeeecccceEEeeeccccCceeEe-eCCCCCCCcccc-----cccCCcccceeecceeEEeeecccccCCCCchhh
Q 020132          187 RTIIPVMRYDIPIVIRNIFNLSVPGIMI-CRPPVDENEDEQ-----IIDSPVKGFATIDNLALVNVEGTGMAGVPGTANA  260 (330)
Q Consensus       187 ~a~~~a~~~~i~v~i~~~~~~~~~GT~I-~~~~~~~~~~~~-----~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~  260 (330)
                      +.+..+.++||++..++....+ ..-.+ .+.. +.+...+     .....+..+++.+|+++|+++|.+|+.++|+++|
T Consensus       340 rvf~~L~~~gI~V~mIsq~sse-~sIsf~V~~~-d~~~av~~L~~~~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gv~~r  417 (465)
T PRK06291        340 RIFSALAEEGVNVIMISQGSSE-SNISLVVDEA-DLEKALKALRREFGEGLVRDVTFDKDVCVVAVVGAGMAGTPGVAGR  417 (465)
T ss_pred             HHHHHHHHCCCcEEEEEecCCC-ceEEEEEeHH-HHHHHHHHHHHHHHHhcCcceEEeCCEEEEEEEcCCccCCcChHHH
Confidence            4566677889988776643222 11112 1211 0000000     0111356789999999999999999999999999


Q ss_pred             hhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          261 IFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       261 if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      +|++|++.||+|.||+|++|+++|||+|+++|.+++++.||++|+.
T Consensus       418 if~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~~f~~  463 (465)
T PRK06291        418 IFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEFIL  463 (465)
T ss_pred             HHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999999999999953

>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]

Probab=99.16  E-value=4.3e-11  Score=119.06  Aligned_cols=71  Identities=41%  Similarity=0.574  Sum_probs=68.5

Q ss_pred             cceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          234 GFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       234 ~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      .+.+++++++|++||.||+.+||+++++|++|+++||||.||+  +|+++|||+|+++|.++|++.||+.|+.
T Consensus       376 ~v~~~~~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--sSe~~Is~vV~~~~~~~av~~LH~~~~~  446 (447)
T COG0527         376 EVEVEEGLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--SSEISISFVVDEKDAEKAVRALHEAFFL  446 (447)
T ss_pred             eEEeeCCeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--cCCceEEEEEccHHHHHHHHHHHHHHhc
Confidence            6788999999999999999999999999999999999999998  8899999999999999999999999974

>PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D

Probab=99.14  E-value=4.5e-11  Score=88.00  Aligned_cols=63  Identities=38%  Similarity=0.588  Sum_probs=58.8

Q ss_pred             eecceeEEeeecccccC-CCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHH
Q 020132          237 TIDNLALVNVEGTGMAG-VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       237 ~~~nia~IsvvG~~~~~-~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      +.+++++|+++|.+|.. .||+.+++|++|+++||+|.+++   |+.+++++|+++|.++|+++||+
T Consensus         2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is---S~~~~~ilV~~~~~~~A~~~L~~   65 (65)
T PF13840_consen    2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS---SEISISILVKEEDLEKAVEALHE   65 (65)
T ss_dssp             EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE---ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred             ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE---EeeeEEEEEeHHHHHHHHHHhcC
Confidence            46799999999999977 99999999999999999999998   79999999999999999999996

>PRK09034 aspartate kinase; Reviewed

Probab=99.12  E-value=1e-10  Score=117.12  Aligned_cols=76  Identities=29%  Similarity=0.409  Sum_probs=72.6

Q ss_pred             cccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHH
Q 020132          232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (330)
Q Consensus       232 ~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~  307 (330)
                      +.++++.+|+++|+++|.+|...+|+++++|++|+++||||+||+|++|+.+|||+|+++|..++++.||++|+.+
T Consensus       376 ~~~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH~~f~~~  451 (454)
T PRK09034        376 PDELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYNAFFKE  451 (454)
T ss_pred             CceEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHHHHHhcc
Confidence            4678999999999999999999999999999999999999999999999999999999999999999999999753

>PRK12354 carbamate kinase; Reviewed

Probab=99.11  E-value=1.6e-10  Score=109.31  Aligned_cols=123  Identities=20%  Similarity=0.176  Sum_probs=87.0

Q ss_pred             HHHHHhhccCCCccEEEeeeee----cCCCCCccccc-ccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIA----STPDNIPTTLK-RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~----~~~~g~~~~lg-rggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~  164 (330)
                      +.++.+++  .+.|||.+|.=|    .+.++....+. ..++|.+|+.||.+++|+.++|+|||||||++++  .|++++
T Consensus       166 ~~I~~Ll~--~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~  241 (307)
T PRK12354        166 RPIRWLLE--KGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRA  241 (307)
T ss_pred             HHHHHHHH--CCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeE
Confidence            78889998  788766653211    11123222211 2467999999999999999999999999999753  378899


Q ss_pred             hhhhhhHHhhhhhhccccccccc---ccceeeecccceEEeeeccc-----cCceeEeeCC
Q 020132          165 LRTLSYQEAWEMSYFGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMICRP  217 (330)
Q Consensus       165 i~~is~~e~~~l~~~g~~v~~p~---a~~~a~~~~i~v~i~~~~~~-----~~~GT~I~~~  217 (330)
                      +++++.+|+.++ .+..+.|.|+   |++.+.+.+.+++|.+....     ...||+|.+.
T Consensus       242 i~~it~~e~~~~-~f~~GgM~pKV~AA~~~~~~gg~~viI~~~~~l~~al~G~~GT~I~~~  301 (307)
T PRK12354        242 IAQATPDELREL-GFAAGSMGPKVEAACEFVRATGKIAGIGSLEDIQAILAGEAGTRISPE  301 (307)
T ss_pred             CCCCCHHHHHhh-CCCcCChHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCCceEEecC
Confidence            999999999888 5678899995   34444445556777654221     1269999763

>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional

Probab=99.10  E-value=1.3e-10  Score=123.76  Aligned_cols=120  Identities=23%  Similarity=0.318  Sum_probs=92.0

Q ss_pred             cccceeeecccceEEeeeccccCceeEe-eCCCCCCC---------cccccccCCcccceeecceeEEeeecccccCCCC
Q 020132          187 RTIIPVMRYDIPIVIRNIFNLSVPGIMI-CRPPVDEN---------EDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPG  256 (330)
Q Consensus       187 ~a~~~a~~~~i~v~i~~~~~~~~~GT~I-~~~~~~~~---------~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~g  256 (330)
                      +.+..+.++||++...+....+ ..-.+ .+.. +..         +..+.....++.+++.+|+++|+++|.+|+..+|
T Consensus       334 rIf~~La~~gI~V~mIsqssSe-~sIsf~V~~~-d~~~av~~L~~~f~~el~~~~~~~i~~~~~valIsvvG~gm~~~~g  411 (819)
T PRK09436        334 RVFAALSRAGISVVLITQSSSE-YSISFCVPQS-DAAKAKRALEEEFALELKEGLLEPLEVEENLAIISVVGDGMRTHPG  411 (819)
T ss_pred             HHHHHHHHCCCcEEEEEcCCCC-ceEEEEEeHH-HHHHHHHHHHHHHHHHhccCCcceEEEeCCEEEEEEEccCcccCcC
Confidence            4566677889988777643222 12122 1211 100         0001112356789999999999999999999999


Q ss_pred             chhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHHh
Q 020132          257 TANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (330)
Q Consensus       257 v~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~~  308 (330)
                      +++|+|++|++.||||.||+|++|+++|||+|+++|.+++++.||+.|+.+-
T Consensus       412 v~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~~f~~~~  463 (819)
T PRK09436        412 IAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQSFFLSD  463 (819)
T ss_pred             HHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHHHHhccc
Confidence            9999999999999999999999999999999999999999999999997653

>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]

Probab=99.08  E-value=7.7e-11  Score=105.76  Aligned_cols=156  Identities=15%  Similarity=0.243  Sum_probs=108.8

Q ss_pred             eeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCc
Q 020132           39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP  118 (330)
Q Consensus        39 v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~  118 (330)
                      +.|.|.----.++-..|.++|+++     .++.+ |+..+-+ +-.+......+.++|.  -+.|||+.      +|.-+
T Consensus        92 ~AAvGQ~~Lmalye~lF~Qy~~~i-----AQvLv-T~~Di~d-~~~r~Nl~~Ti~eLL~--m~viPIvN------eNDav  156 (285)
T KOG1154|consen   92 CAAVGQSGLMALYETLFTQYGITI-----AQVLV-TRNDILD-EQQRKNLQNTISELLS--MNVIPIVN------ENDAV  156 (285)
T ss_pred             HHHhCcchHHHHHHHHHHHhccch-----heeee-cCcchhh-HHHHHHHHHHHHHHHh--CCceeeec------CCCcc
Confidence            455666544556677899999986     45544 4333311 0112223466777777  78999973      33322


Q ss_pred             cc--ccccC---cchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhh-hhh-----hcccccccc-
Q 020132          119 TT--LKRDG---SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAW-EMS-----YFGANVLHP-  186 (330)
Q Consensus       119 ~~--lgrgg---sD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~-~l~-----~~g~~v~~p-  186 (330)
                      ..  .-+|.   +|.+|+.+|..++||.++++|||||+||..|.. ..+++++..+..+.. +..     ..|.++|.. 
T Consensus       157 s~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tK  235 (285)
T KOG1154|consen  157 SPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETK  235 (285)
T ss_pred             CCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCccccCccCccCcCcchhh
Confidence            11  33445   799999999999999999999999999965554 447888888776554 222     356789998 


Q ss_pred             -cccceeeecccceEEeeeccccCc
Q 020132          187 -RTIIPVMRYDIPIVIRNIFNLSVP  210 (330)
Q Consensus       187 -~a~~~a~~~~i~v~i~~~~~~~~~  210 (330)
                       +|+..|...|+++.|.|+..|+..
T Consensus       236 v~AA~~A~~~Gv~viI~~g~~p~~I  260 (285)
T KOG1154|consen  236 VKAAVNALNAGVSVIITNGDAPENI  260 (285)
T ss_pred             HHHHHHHhcCCceEEEeCCCChHHH
Confidence             488999999999999999888643

>PRK09411 carbamate kinase; Reviewed

Probab=99.08  E-value=3.1e-10  Score=106.66  Aligned_cols=118  Identities=18%  Similarity=0.230  Sum_probs=86.5

Q ss_pred             HHHHHhhccCCCccEEEeee--e--ecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGF--I--ASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~--i--~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i  165 (330)
                      +.++.+++  .|.|||.+|.  +  +.+.+|...+   .+.|.+|+.||.+|+|++++|+|||||||..++  .|+++++
T Consensus       167 ~~I~~Ll~--~G~IVI~~gGGGIPV~~~~~G~e~v---IDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I  239 (297)
T PRK09411        167 EAIELLLK--EGHVVICSGGGGVPVTEDGAGSEAV---IDKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAI  239 (297)
T ss_pred             HHHHHHHH--CCCEEEecCCCCCCeEEcCCCeEEe---cCHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCC
Confidence            78899998  7888777643  1  1222344343   357999999999999999999999999998642  4678999


Q ss_pred             hhhhhHHhhhhhhccccccccc---ccceeeecccceEEeeeccc-----cCceeEee
Q 020132          166 RTLSYQEAWEMSYFGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMIC  215 (330)
Q Consensus       166 ~~is~~e~~~l~~~g~~v~~p~---a~~~a~~~~i~v~i~~~~~~-----~~~GT~I~  215 (330)
                      ++++.+|+.++.. ..+.|.|+   |++.+...+.+++|.+..+.     ...||+|.
T Consensus       240 ~~it~~e~~~~~~-~~GgM~pKVeAA~~~v~~~g~~a~I~~l~~~~~~l~G~~GT~I~  296 (297)
T PRK09411        240 RHATPDELAPFAK-ADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCIS  296 (297)
T ss_pred             CCcCHHHHHHhcc-CCCCcHHHHHHHHHHHHhCCCeEEECChhHHHHHHCCCCCeEEe
Confidence            9999999987765 45678885   44555556778888764321     12588874

>PRK12352 putative carbamate kinase; Reviewed

Probab=99.01  E-value=3.3e-10  Score=108.01  Aligned_cols=122  Identities=14%  Similarity=0.142  Sum_probs=85.5

Q ss_pred             HHHHHhhccCCCccEEEe-----eeeecCCCCCcccccc-cCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhh
Q 020132           90 KRLEKWFSQSPSNTIIAT-----GFIASTPDNIPTTLKR-DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV  163 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~-----G~i~~~~~g~~~~lgr-ggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~  163 (330)
                      +.|+.+++  .+.|+|.+     +. +.+..|+..++.- -+.|..|+.+|.+|+|++|+|+|||+|||.++|+  ++++
T Consensus       177 ~~I~~ll~--~g~iVi~~ggggiPv-~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~~~~  251 (316)
T PRK12352        177 PAIKALIQ--QGFVVIGAGGGGIPV-VRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFGK--PQQQ  251 (316)
T ss_pred             HHHHHHHH--CCCEEEecCCCCCCE-EeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--CCcc
Confidence            78888888  78885554     22 2233333322110 1379999999999999999999999999987654  6678


Q ss_pred             hhhhhhhHHhhhhhhcc---ccccccc--ccceeeeccc-ceEEeeeccc-----cCceeEeeC
Q 020132          164 ILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI-PIVIRNIFNL-----SVPGIMICR  216 (330)
Q Consensus       164 ~i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i-~v~i~~~~~~-----~~~GT~I~~  216 (330)
                      ++++++..|+.++...|   .++|.|+  ++..+.+.|+ +++|.+....     ...||+|..
T Consensus       252 li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~~~~i~~al~g~~GT~I~~  315 (316)
T PRK12352        252 ALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGETGTHIIK  315 (316)
T ss_pred             cccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcchHHHHHHHcCCCCeEEEe
Confidence            99999999999998754   4689984  4434445555 6888874321     126888853

>cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=99.00  E-value=1.1e-09  Score=78.61  Aligned_cols=64  Identities=47%  Similarity=0.733  Sum_probs=60.6

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ++|+++|.++...+++.+++|+.|++++|++.+++|+.++.+++|++++++.+++++.||+.|+
T Consensus         1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~~~~~~~l~~~~~   64 (65)
T cd04892           1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALHEEFF   64 (65)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHHHHHHHHHHHHHh
Confidence            5799999999999999999999999999999999998778999999999999999999999885

This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an

>cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=98.97  E-value=1.3e-09  Score=78.39  Aligned_cols=62  Identities=34%  Similarity=0.554  Sum_probs=58.1

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ++|+++|.++.+.+++.+++|+.|++.||+++|+++  ++.+++|++++.|.+++++.||+.|+
T Consensus         1 ~~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~d~~~~~~~l~~~~~   62 (63)
T cd04936           1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST--SEIKISCLIDEDDAEKAVRALHEAFE   62 (63)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc--cCceEEEEEeHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999985  57999999999999999999999984

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu

>cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains

Probab=98.95  E-value=1.6e-09  Score=77.85  Aligned_cols=62  Identities=35%  Similarity=0.554  Sum_probs=58.1

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ++|+++|.++...+++.+++|+.|++++|+++++++  ++.+++|+++++|.+++++.||+.|+
T Consensus         1 ~~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~~~~~~~~~l~~~l~   62 (63)
T cd04923           1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST--SEIKISCLVDEDDAEKAVRALHEAFE   62 (63)
T ss_pred             CEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc--cCCeEEEEEeHHHHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999984  58999999999999999999999984

This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class

Probab=98.90  E-value=2.3e-09  Score=105.67  Aligned_cols=116  Identities=27%  Similarity=0.436  Sum_probs=85.7

Q ss_pred             cccceeeecccceEEeeeccccCceeEe-eCCCCCCCcccccc-----cCCcccceeecceeEEeeecccccCCCCchhh
Q 020132          187 RTIIPVMRYDIPIVIRNIFNLSVPGIMI-CRPPVDENEDEQII-----DSPVKGFATIDNLALVNVEGTGMAGVPGTANA  260 (330)
Q Consensus       187 ~a~~~a~~~~i~v~i~~~~~~~~~GT~I-~~~~~~~~~~~~~~-----~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~  260 (330)
                      +.+..+.+++|++...+....+ ..-++ .+.. +.....+..     ...+..+.+++|+++|+++|.+|++.||++++
T Consensus       279 ~if~~L~~~~I~i~~i~~~~s~-~~Is~~V~~~-d~~~a~~~L~~~~~~~~~~~i~~~~~~a~IsvVG~~~~~~~g~~a~  356 (401)
T TIGR00656       279 RIFGALAERNINVDLISQTPSE-TSISLTVDET-DADEAVRALKDQSGAAGLDRVEVEEGLAKVSIVGAGMVGAPGVASE  356 (401)
T ss_pred             HHHHHHHHcCCcEEEEEcCCCC-ceEEEEEeHH-HHHHHHHHHHHHHHhcCCceEEEeCCeEEEEEECCCcccCccHHHH
Confidence            4556667788887776653322 12122 2211 110000100     11245678889999999999999999999999


Q ss_pred             hhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          261 IFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       261 if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      +|++|+++|||+.+++  +|+.+++|+|+++|.+++++.||+.|+.
T Consensus       357 i~~~L~~~gIni~~i~--~s~~~is~vv~~~d~~~av~~Lh~~f~~  400 (401)
T TIGR00656       357 IFSALEEKNINILMIG--SSETNISFLVDEKDAEKAVRKLHEVFEE  400 (401)
T ss_pred             HHHHHHHCCCcEEEEE--cCCCEEEEEEeHHHHHHHHHHHHHHHcc
Confidence            9999999999999987  8899999999999999999999999864

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.

>PRK04531 acetylglutamate kinase; Provisional

Probab=98.89  E-value=3.3e-09  Score=104.37  Aligned_cols=84  Identities=13%  Similarity=0.209  Sum_probs=68.4

Q ss_pred             HHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh-
Q 020132           92 LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY-  170 (330)
Q Consensus        92 i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~-  170 (330)
                      ++.+++  .|.|||++++ +.+..|++.+++   +|..|+.||.+|+|++++++|||+|||+.|      .+++++++. 
T Consensus       122 I~~~L~--~g~IPVlspl-g~~~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~  189 (398)
T PRK04531        122 VESSLR--AGSIPVIASL-GETPSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLS  189 (398)
T ss_pred             HHHHHH--CCCEEEEeCc-EECCCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHH
Confidence            666776  8999999987 777889888874   799999999999999999999999999753      578899986 


Q ss_pred             HHhhhhhhcc--ccccccc
Q 020132          171 QEAWEMSYFG--ANVLHPR  187 (330)
Q Consensus       171 ~e~~~l~~~g--~~v~~p~  187 (330)
                      ++...+...|  .++|.|+
T Consensus       190 ~e~~~l~~~~~vtgGM~~K  208 (398)
T PRK04531        190 TEYDHLMQQPWINGGMKLK  208 (398)
T ss_pred             HHHHHHHhcCCCCccHHHH
Confidence            5677775433  3677774

>PRK07431 aspartate kinase; Provisional

Probab=98.87  E-value=2.8e-09  Score=110.11  Aligned_cols=71  Identities=31%  Similarity=0.469  Sum_probs=67.1

Q ss_pred             ccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          233 KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       233 ~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ..+.+++++++|++||.+|+.+||+++|+|++|+++||++.+++  +|+.+|||+|+++|.++++++||+.|+
T Consensus       511 ~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~--~S~~~Is~vV~~~~~~~av~~Lh~~f~  581 (587)
T PRK07431        511 AEVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIA--TSEIRTSCVVAEDDGVKALQAVHQAFG  581 (587)
T ss_pred             ceEEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEee--ccceEEEEEEeHHHHHHHHHHHHHHhc
Confidence            33677899999999999999999999999999999999999998  789999999999999999999999994

>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]

Probab=98.84  E-value=2.7e-09  Score=92.52  Aligned_cols=83  Identities=25%  Similarity=0.350  Sum_probs=72.6

Q ss_pred             cchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecccceEEeeec
Q 020132          126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF  205 (330)
Q Consensus       126 sD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~  205 (330)
                      ||..++++|+.+++.++++.|||||||+.+|.    ++++++|+..|..+    |-..++|-+-.++.++++.++++|+.
T Consensus       118 SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k~~m~~~Vvng~  189 (212)
T COG2054         118 SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVKYKMNCRVVNGK  189 (212)
T ss_pred             ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHHcCCceEEECCC
Confidence            69999999999999999999999999998865    58999998887653    67889998889999999999999998


Q ss_pred             ccc----------CceeEeeC
Q 020132          206 NLS----------VPGIMICR  216 (330)
Q Consensus       206 ~~~----------~~GT~I~~  216 (330)
                      .|+          .+||.|.+
T Consensus       190 ~pervi~~lrGk~~v~T~Ivg  210 (212)
T COG2054         190 EPERVILALRGKEVVGTLIVG  210 (212)
T ss_pred             CHHHHHHHHhccccceEEEeC
Confidence            774          46788764

>PLN02825 amino-acid N-acetyltransferase

Probab=98.84  E-value=2.8e-09  Score=107.69  Aligned_cols=108  Identities=9%  Similarity=0.107  Sum_probs=83.5

Q ss_pred             HHHhcCCcc----ccccceeEEEECCC--------CCC---C-CCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCC
Q 020132           54 VVRKNGIDC----KWMDTREVLIVNPT--------SSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (330)
Q Consensus        54 ~L~~~Gi~a----~~l~~~~~~~~~~~--------~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~  117 (330)
                      .|++.|+++    ..+...+-..++..        .+|   + .++|.    +.|+.+++  .|.|||+++. |.+.+|+
T Consensus       112 ~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~----~~i~~~L~--~g~Ipvispl-g~s~~Ge  184 (515)
T PLN02825        112 NLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDV----SRIKERLD--SNCIVLLSNL-GYSSSGE  184 (515)
T ss_pred             HHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcH----HHHHHHHh--CCCeEEECCc-eECCCCC
Confidence            469999998    66766553222211        222   2 34555    88899998  8999999996 9999999


Q ss_pred             cccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh
Q 020132          118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY  178 (330)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~  178 (330)
                      +.++.   +|..|+.+|.+|+|++++|+||++ +++.      +.+++++++.+|+.++..
T Consensus       185 ~~Nin---aD~vA~avA~aL~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~  235 (515)
T PLN02825        185 VLNCN---TYEVATACALAIGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIR  235 (515)
T ss_pred             EEeeC---HHHHHHHHHHHcCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHH
Confidence            99984   899999999999999999999977 5543      246889999988888864

>TIGR00657 asp_kinases aspartate kinase

Probab=98.81  E-value=6.6e-09  Score=103.81  Aligned_cols=116  Identities=26%  Similarity=0.336  Sum_probs=86.2

Q ss_pred             cccceeeecccceEEeeeccccCceeEeeCCCCCCCcccc-----cccCCcccceeecceeEEeeecccccCCCCchhhh
Q 020132          187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQ-----IIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAI  261 (330)
Q Consensus       187 ~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~-----~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~i  261 (330)
                      +.+..+.++||++.......++ ....+.-...+......     .....++.+++.+|+++|+++|.+|.+.||+.+++
T Consensus       320 ~if~~L~~~~I~I~~i~q~~se-~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~a~i  398 (441)
T TIGR00657       320 RVFGALAEAGINVDLITQSSSE-TSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVASKI  398 (441)
T ss_pred             HHHHHHHHcCCeEEEEEecCCC-ceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchHHHH
Confidence            4556677888987766532222 12222111110000000     11245678999999999999999999999999999


Q ss_pred             hhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          262 FGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       262 f~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      |+.|+++||||.||+  +|+.+|+|+|+++|.+++++.||++|+
T Consensus       399 f~~La~~~Inv~~i~--~se~~Is~vV~~~d~~~a~~~Lh~~f~  440 (441)
T TIGR00657       399 FEALAQNGINIEMIS--SSEINISFVVDEKDAEKAVRLLHNALF  440 (441)
T ss_pred             HHHHHHCCCCEEEEE--ecCCcEEEEEeHHHHHHHHHHHHHHhh
Confidence            999999999999998  468999999999999999999999986

The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.

>cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=98.77  E-value=1.2e-08  Score=71.66  Aligned_cols=60  Identities=43%  Similarity=0.680  Sum_probs=56.1

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE  301 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh  301 (330)
                      ++|+++|.+|...+++.+++|+.|++++|++++++|+.++.+++|++++++.+++++.||
T Consensus         1 ~~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~~~~~~~~~~~lh   60 (60)
T cd04868           1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH   60 (60)
T ss_pred             CEEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEeHHHHHHHHHHhC
Confidence            478999999989999999999999999999999999877799999999999999999887

This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am

>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional

Probab=98.74  E-value=1.2e-08  Score=108.41  Aligned_cols=118  Identities=13%  Similarity=0.138  Sum_probs=83.8

Q ss_pred             cccceeeecccceEEeeeccccCceeEeeCCCCCCCcccccc--cCCcccceeecceeEEeeecccccCCCCchhhhhhh
Q 020132          187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQII--DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGA  264 (330)
Q Consensus       187 ~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~--~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~  264 (330)
                      +.+..+.+++|++...+....+ ....+.-...+.+...+..  ......+.+++++++|++||.+|+.++|+++++|++
T Consensus       336 ~if~~l~~~~I~v~~i~~~~s~-~sis~~i~~~~~~~~~~~l~~~~~~~~i~v~~~~a~VsvVG~gm~~~~gv~~~~f~a  414 (810)
T PRK09466        336 ELDQLLKRAQLRPLAVGVHPDR-QLLQLAYTSEVADSALKLLDDAALPGELKLREGLALVALVGAGVTRNPLHCHRFYQQ  414 (810)
T ss_pred             HHHHHHHHCCCeEEEEEecCCC-cEEEEEEeHHHHHHHHHHHHhhcCCCcEEEeCCeEEEEEeCCCcccCccHHHHHHHH
Confidence            4456667788887766544322 2223322111111000000  012366888999999999999999999999999999


Q ss_pred             hcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHH
Q 020132          265 VKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (330)
Q Consensus       265 L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~  307 (330)
                      |++.||++  ++|++|+++|||+|+++|.+++++.||+.|+..
T Consensus       415 L~~~~I~i--i~~~~s~~sis~vV~~~d~~~av~~LH~~f~~~  455 (810)
T PRK09466        415 LKDQPVEF--IWQSEDGLSLVAVLRQGPTESLIQGLHQSLFRA  455 (810)
T ss_pred             HHhCCCcE--EEEeCCCcEEEEEEehHHHHHHHHHHHHHHhCc
Confidence            99997766  455578999999999999999999999999764

>PRK08210 aspartate kinase I; Reviewed

Probab=98.73  E-value=1.8e-08  Score=99.52  Aligned_cols=114  Identities=23%  Similarity=0.379  Sum_probs=83.6

Q ss_pred             cccceeeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecccccCCCCchhhhhhhhc
Q 020132          187 RTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK  266 (330)
Q Consensus       187 ~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~  266 (330)
                      +-+..+.++||++...+... + ..+...... +.+...+.....-..+.+.+|+++|+++|.+|++.||+++++|++|+
T Consensus       288 ~If~~L~~~~I~i~~i~~~~-~-~is~~v~~~-~~~~a~~~l~~~~~~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~  364 (403)
T PRK08210        288 EVFKALAEAGISVDFINIFP-T-EVVFTVSDE-DSEKAKEILENLGLKPSVRENCAKVSIVGAGMAGVPGVMAKIVTALS  364 (403)
T ss_pred             HHHHHHHHcCCeEEEEEecC-c-eEEEEEcHH-HHHHHHHHHHHhCCcEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHH
Confidence            45566778899877665542 2 233222211 11100000011111577889999999999999999999999999999


Q ss_pred             ccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          267 DVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       267 ~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ++||++.+++  +|+.+++|+|+++|.+++++.||++|+
T Consensus       365 ~~~I~i~~~~--~s~~~is~vv~~~~~~~a~~~Lh~~f~  401 (403)
T PRK08210        365 EEGIEILQSA--DSHTTIWVLVKEEDMEKAVNALHDAFE  401 (403)
T ss_pred             hCCCCEEEEe--cCCCEEEEEEcHHHHHHHHHHHHHHhc
Confidence            9999999876  489999999999999999999999984

>cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=98.64  E-value=6.3e-08  Score=73.11  Aligned_cols=64  Identities=25%  Similarity=0.394  Sum_probs=56.1

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhH---HHHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV---KAVAEALESKFRE  306 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~---~~av~~Lh~~f~~  306 (330)
                      +++|+++|.++...+|+.+++|++|+++||++++++  +|+.++||++++++.   ...++.|-++|..
T Consensus         1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~--~s~~~is~~v~~~~~~~~~~~~~~~~~~l~~   67 (75)
T cd04912           1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIS--TSEVSVSLTLDPTKNLSDQLLLDALVKDLSQ   67 (75)
T ss_pred             CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEE--cCCcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence            478999999999999999999999999999999998  468999999999987   5577777776654

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD

>cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1)

Probab=98.64  E-value=7.9e-08  Score=73.30  Aligned_cols=63  Identities=16%  Similarity=0.324  Sum_probs=54.4

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHH------HHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK------AVAEALESKFR  305 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~------~av~~Lh~~f~  305 (330)
                      +++|++.+.++...||+.+++|+.|+++||+|+||+|  ++.++||++++++..      .+++.|.++|.
T Consensus         1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~~sd~~~~~~~~~~l~~~~~~~~   69 (78)
T cd04933           1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEELE   69 (78)
T ss_pred             CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEhhhhhhhhhHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999997  579999999999984      46666665553

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK06635 aspartate kinase; Reviewed

Probab=98.62  E-value=5.8e-08  Score=95.89  Aligned_cols=117  Identities=24%  Similarity=0.312  Sum_probs=86.3

Q ss_pred             cccceeeecccceEEeeeccccC--ceeEeeCCCCCCCcccccc-----cCCcccceeecceeEEeeecccccCCCCchh
Q 020132          187 RTIIPVMRYDIPIVIRNIFNLSV--PGIMICRPPVDENEDEQII-----DSPVKGFATIDNLALVNVEGTGMAGVPGTAN  259 (330)
Q Consensus       187 ~a~~~a~~~~i~v~i~~~~~~~~--~GT~I~~~~~~~~~~~~~~-----~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a  259 (330)
                      +.+..+.++||++...++..++.  ..-.+.-...+.+...+..     .-.++.+++.+|+++|+++|.+|++.||+++
T Consensus       279 ~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~~~~~~~~~i~~~~~ia~isvvG~~~~~~~g~~a  358 (404)
T PRK06635        279 QIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEVKDEIGAESVTYDDDIAKVSVVGVGMRSHPGVAA  358 (404)
T ss_pred             HHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHHHHHcCcceEEEcCCeEEEEEECCCCCCCchHHH
Confidence            44566778899888776654331  1222211111001011101     1135678899999999999999999999999


Q ss_pred             hhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          260 AIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       260 ~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ++|++|+++||||.+++  +|+.+++|+++++|.+++++.||++|.
T Consensus       359 ~i~~~La~~~Ini~~i~--ss~~~is~vv~~~d~~~a~~~Lh~~f~  402 (404)
T PRK06635        359 KMFEALAEEGINIQMIS--TSEIKISVLIDEKYLELAVRALHEAFG  402 (404)
T ss_pred             HHHHHHHHCCCCEEEEE--ecCCeEEEEEcHHHHHHHHHHHHHHHC
Confidence            99999999999999998  478999999999999999999999984

>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII

Probab=98.53  E-value=1.7e-07  Score=70.89  Aligned_cols=62  Identities=23%  Similarity=0.319  Sum_probs=51.7

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHH--HHHH-HHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK--AVAE-ALESKF  304 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~--~av~-~Lh~~f  304 (330)
                      +++|++.|.++...||+.+++|+.|+++||+|+||+|  ++.++||+++.++..  ++++ .|-+.|
T Consensus         1 ~~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~--s~~~iSftv~~~d~~~~~~~~~~l~~~l   65 (75)
T cd04932           1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT--SEISVALTLDNTGSTSDQLLTQALLKEL   65 (75)
T ss_pred             CEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee--cCCEEEEEEeccccchhHHHHHHHHHHH
Confidence            4789998888999999999999999999999999997  569999999998853  2443 455544

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains

Probab=98.50  E-value=2.4e-07  Score=69.80  Aligned_cols=64  Identities=19%  Similarity=0.239  Sum_probs=56.1

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHH-HHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA-VAEALESKFRE  306 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~-av~~Lh~~f~~  306 (330)
                      ++.|++.+.+|...+|+.+++|+.|+++||+++||+|  ++.++||++++++... .++.|.+++..
T Consensus         1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~--s~~~isftv~~~~~~~~~l~~l~~el~~   65 (73)
T cd04934           1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST--SEVHVSMALHMENAEDTNLDAAVKDLQK   65 (73)
T ss_pred             CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEehhhcChHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999997  5699999999988755 77777777654

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro

>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins

Probab=98.47  E-value=4.2e-07  Score=67.10  Aligned_cols=61  Identities=34%  Similarity=0.550  Sum_probs=54.6

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC---cceeeeecchhhHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s---e~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      +++|+++|  +.+.+|+.+++|+.|+++||++++++|+.+   ..+++|+++++|.+.+++.||+.
T Consensus         1 ~~~v~v~~--~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~~d~~~~~~~l~~~   64 (75)
T cd04913           1 QAKITLRG--VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLEKL   64 (75)
T ss_pred             CeEEEECC--CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecHHHHHHHHHHHHHH
Confidence            36888987  678899999999999999999999999766   35799999999999999999994

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee

>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins

Probab=98.47  E-value=3.3e-07  Score=64.80  Aligned_cols=57  Identities=35%  Similarity=0.599  Sum_probs=50.8

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCc---ceeeeecchhhHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVPEKEVKAVAEAL  300 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se---~sIS~vv~~~d~~~av~~L  300 (330)
                      ++|+++|  +.+.+|+.+++|+.|+++||++++++|+.+.   .+++|+++++|.+++++.|
T Consensus         1 ~~v~v~~--~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~~~~~~~~~~l   60 (61)
T cd04891           1 AQVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLEKALAIL   60 (61)
T ss_pred             CEEEEec--CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeHHHHHHHHHHh
Confidence            4678877  6788999999999999999999999998765   8899999999999988765

This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein

Probab=98.44  E-value=4.3e-07  Score=68.72  Aligned_cols=64  Identities=27%  Similarity=0.387  Sum_probs=54.3

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhh--HHH-HHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKE--VKA-VAEALESKFRE  306 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d--~~~-av~~Lh~~f~~  306 (330)
                      +++|++.+.+|...+|+.+++|+.|++++|+++||+|  ++.++||++++++  ... .++.|-+++..
T Consensus         1 ~~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~~~~~~~~~~~~~~l~~el~~   67 (75)
T cd04935           1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLDPDPNGLDPDVLDALLDDLNQ   67 (75)
T ss_pred             CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEeCcccccchHHHHHHHHHHHh
Confidence            3689999999999999999999999999999999996  5699999999988  333 66666666543

This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase)

Probab=98.41  E-value=6.1e-07  Score=64.73  Aligned_cols=60  Identities=22%  Similarity=0.274  Sum_probs=53.7

Q ss_pred             EEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHH
Q 020132          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       243 ~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      .|++.|.+|...+|+.+++|+.|++++|+++||+|  ++.++||+++..+.++.++.|-+++
T Consensus         2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~~~~~~~~~~~l~~~l   61 (62)
T cd04890           2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYLDDSLLPKKLKRLLAEL   61 (62)
T ss_pred             EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEehhhhhHHHHHHHHhh
Confidence            57899999999999999999999999999999985  5799999999999888887776643

This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel

>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]

Probab=98.23  E-value=2e-06  Score=79.86  Aligned_cols=122  Identities=20%  Similarity=0.264  Sum_probs=85.4

Q ss_pred             HHHHHhhccCCCccEEEeeeeec----CCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIAS----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~----~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i  165 (330)
                      +.|+.+++  +|.++|..|-=|.    +..|..-.=.--+-|.+++.||..++||.++|+||||+||-.=-+  |+.+.+
T Consensus       175 ~~Ik~L~~--~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p~q~~L  250 (312)
T COG0549         175 EAIKALLE--SGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGK--PNQQAL  250 (312)
T ss_pred             HHHHHHHh--CCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCC--ccchhh
Confidence            67888887  7788877763111    111100000011359999999999999999999999999976322  678899


Q ss_pred             hhhhhHHhhhhhh---ccccccccc---ccceeeecccceEEeeeccc-----cCceeEee
Q 020132          166 RTLSYQEAWEMSY---FGANVLHPR---TIIPVMRYDIPIVIRNIFNL-----SVPGIMIC  215 (330)
Q Consensus       166 ~~is~~e~~~l~~---~g~~v~~p~---a~~~a~~~~i~v~i~~~~~~-----~~~GT~I~  215 (330)
                      +.++.+|+++...   |..+-|-|+   |+......|=+..|.+..+.     ...||.|.
T Consensus       251 ~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~GT~I~  311 (312)
T COG0549         251 DRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKAGTVIV  311 (312)
T ss_pred             cccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCCCcEec
Confidence            9999999888875   345788885   66777766777877765432     24588875

>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI

Probab=98.16  E-value=4.5e-06  Score=61.65  Aligned_cols=57  Identities=21%  Similarity=0.337  Sum_probs=47.9

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      ++|++.|  ..+.+|+.+++|+.|+++||+++||+|. ++ ++||+++..|.+++.+.|.+
T Consensus         2 ~~vtv~~--~~~~~~~~a~if~~La~~~InvDmI~~~-~~-~isFtv~~~d~~~~~~il~~   58 (67)
T cd04914           2 TQIKVKA--KDNENDLQQRVFKALANAGISVDLINVS-PE-EVIFTVDGEVAEKAVDILEK   58 (67)
T ss_pred             eEEEEec--CCCCccHHHHHHHHHHHcCCcEEEEEec-CC-CEEEEEchhhHHHHHHHHHH
Confidence            6788877  4466899999999999999999999876 34 79999999999998666544

This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and

>PRK09084 aspartate kinase III; Validated

Probab=98.09  E-value=6.1e-06  Score=82.75  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=65.5

Q ss_pred             CcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhH-HHHHHHHHHHHHHHhc
Q 020132          231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV-KAVAEALESKFREALN  309 (330)
Q Consensus       231 ~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~-~~av~~Lh~~f~~~~~  309 (330)
                      .+++|+..+|+++|++.|.+|...+|+++++|+.|++++|+|+||+|  |+.+|||++++++. .++...+++++..+++
T Consensus       296 ~v~~it~~~~i~lItv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~s--se~sIs~~i~~~~~~~~~~~~~~~~l~~el~  373 (448)
T PRK09084        296 LFRAIALRRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITT--SEVSVSLTLDTTGSTSTGDTLLTQALLTELS  373 (448)
T ss_pred             eeEEEEeeCCEEEEEEecCCCCccccHHHHHHHHHHHcCCeEEEEec--cCcEEEEEEechhhhhhhhHHHHHHHHHHHh
Confidence            58899999999999999999999999999999999999999999995  58999999999984 3455555555555543

>PLN02551 aspartokinase

Probab=98.03  E-value=9e-06  Score=82.85  Aligned_cols=64  Identities=19%  Similarity=0.349  Sum_probs=59.5

Q ss_pred             CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHH
Q 020132          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA  295 (330)
Q Consensus       230 ~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~  295 (330)
                      ..+++|+..+|+++|++.|.+|.+.+|+++++|+.|+++||+|+||+|  |+.+|||+++.++...
T Consensus       355 ~~v~~It~~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~Iss--Se~sIs~~v~~~~~~~  418 (521)
T PLN02551        355 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSISLTLDPSKLWS  418 (521)
T ss_pred             CcccceecCCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEec--cCCEEEEEEehhHhhh
Confidence            458999999999999999999999999999999999999999999984  5899999999998755

>PRK09181 aspartate kinase; Validated

Probab=97.89  E-value=1.9e-05  Score=79.58  Aligned_cols=72  Identities=18%  Similarity=0.206  Sum_probs=63.4

Q ss_pred             CcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchh--hHHHHHHHHHHHH
Q 020132          231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK--EVKAVAEALESKF  304 (330)
Q Consensus       231 ~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~--d~~~av~~Lh~~f  304 (330)
                      .++.|+..+|+++|++.|.+|...+|+.+++|+.|++++|+|+|++  +|+.++||+++.+  +.+++++.|++.|
T Consensus       319 ~ik~It~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~--ss~~sis~~v~~~~~~~~~~~~~L~~~~  392 (475)
T PRK09181        319 RVEIIAGSDKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKA--TNANTITHYLWGSLKTLKRVIAELEKRY  392 (475)
T ss_pred             cceeEeccCCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEE--ecCcEEEEEEcCChHHHHHHHHHHHHhc
Confidence            4788999999999999999999999999999999999999999997  4589999999987  3567777777665

>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional

Probab=97.68  E-value=6.7e-05  Score=81.09  Aligned_cols=73  Identities=30%  Similarity=0.357  Sum_probs=63.9

Q ss_pred             CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHH---HHHHHHHHHH
Q 020132          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK---AVAEALESKF  304 (330)
Q Consensus       230 ~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~---~av~~Lh~~f  304 (330)
                      ..+++|+..+|+++|++.|.+|...+|+++++|+.|++++|+|+||+  +|+.++||++++.+..   ++++.+.+.|
T Consensus       311 ~~v~~It~~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~--sse~sis~~i~~~~~~~~~~~~~~l~~~l  386 (861)
T PRK08961        311 PGVKAISRKNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLIS--SSETNVTVSLDPSENLVNTDVLAALSADL  386 (861)
T ss_pred             CcceeEEEECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEE--cCCCEEEEEEccccccchHHHHHHHHHHH
Confidence            45899999999999999999999999999999999999999999998  4689999999998753   5666666554

>cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway

Probab=97.28  E-value=0.00062  Score=50.88  Aligned_cols=64  Identities=20%  Similarity=0.253  Sum_probs=58.2

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ..|.+-+.+|.+.+|+.++||+.|+++++++.+...++.++++++..+.+..++++..|++.|.
T Consensus         2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p   65 (71)
T cd04910           2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFP   65 (71)
T ss_pred             eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCc
Confidence            3467888999999999999999999999999999988889999999999999999999999874

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase

>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold

Probab=96.97  E-value=0.00095  Score=47.85  Aligned_cols=54  Identities=26%  Similarity=0.342  Sum_probs=46.0

Q ss_pred             cccCCCCchhhhhhhhcccCccEEEEeccCCc-----ceeeeecchhhHHHHHHHHHHH
Q 020132          250 GMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       250 ~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se-----~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      .+.+.||+++++++.|+++|+||.++.|..+.     ..+.+..+..+..++++.|++.
T Consensus         6 ~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~   64 (66)
T PF01842_consen    6 IVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEAL   64 (66)
T ss_dssp             EEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHH
T ss_pred             EcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcc
Confidence            36789999999999999999999999987653     4566667888999999999874

ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C ....

>PRK05925 aspartate kinase; Provisional

Probab=96.86  E-value=0.0019  Score=64.73  Aligned_cols=70  Identities=14%  Similarity=0.240  Sum_probs=55.5

Q ss_pred             CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhH-HHHHHHHHHH
Q 020132          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV-KAVAEALESK  303 (330)
Q Consensus       230 ~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~-~~av~~Lh~~  303 (330)
                      ..+++|+..+|+++|++.+..  ..+++++++|+.|+++||+|++++  +++.+|||++++++. ..+++.|.+.
T Consensus       289 ~~ik~It~~~~~~~i~v~~~~--~~~~~~~~if~~l~~~~I~vd~i~--s~~~sis~~i~~~~~~~~~~~~l~~~  359 (440)
T PRK05925        289 PRIKALSLKQNQALWSVDYNS--LGLVRLEDVLGILRSLGIVPGLVM--AQNLGVYFTIDDDDISEEYPQHLTDA  359 (440)
T ss_pred             CceEEEEEeCCEEEEEEecCC--cchhHHHHHHHHHHHcCCcEEEEe--ccCCEEEEEEechhccHHHHHHHHHH
Confidence            358899999999999997643  357788999999999999999985  346799999999876 3355555443

>cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII

Probab=96.69  E-value=0.0022  Score=48.57  Aligned_cols=70  Identities=10%  Similarity=0.219  Sum_probs=55.1

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHH-HHHHHHHHHHHHhccCcc
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKA-VAEALESKFREALNAGRL  313 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~-av~~Lh~~f~~~~~~~~i  313 (330)
                      +.|++.-..|....||..|+++.|.++||+++++.  ++--++|++++++++.. .++.+-+++..++....+
T Consensus         2 ~~I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~P--SGID~~Siii~~~~~~~~~~~~i~~~i~~~~~pD~i   72 (76)
T cd04911           2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHMP--SGIDDISIIIRDNQLTDEKEQKILAEIKEELHPDEI   72 (76)
T ss_pred             ceEehhHhhccchhcHHHHHHHHHHHcCCCEeeec--CCCccEEEEEEccccchhhHHHHHHHHHHhcCCCEE
Confidence            34566667788888999999999999999999997  67889999999997776 666555556665554443

This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG3830 ACT domain-containing protein [Signal transduction mechanisms]

Probab=96.57  E-value=0.0034  Score=48.75  Aligned_cols=67  Identities=19%  Similarity=0.174  Sum_probs=54.8

Q ss_pred             ceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC--cceeeeecchhhHHHHHHHHHHHHHHHhc
Q 020132          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEKEVKAVAEALESKFREALN  309 (330)
Q Consensus       240 nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s--e~sIS~vv~~~d~~~av~~Lh~~f~~~~~  309 (330)
                      ..++|++.|.   ++||+.+.+++.|+++|+||.-|+|..-  -.++-++++-.+...-..++.+++..+.+
T Consensus         2 ~~avITV~Gk---Dr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~~~~   70 (90)
T COG3830           2 MRAVITVIGK---DRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAAEGK   70 (90)
T ss_pred             ceEEEEEEcC---CCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHHHHHH
Confidence            4689999995   6899999999999999999999999764  47777888877777777777777665543

>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]

Probab=95.74  E-value=0.0088  Score=59.80  Aligned_cols=119  Identities=13%  Similarity=0.053  Sum_probs=83.7

Q ss_pred             eccchhHHHHHHHHHHhcCCccccccceeEE--EEC-C-------CCCCC----CCCCchhhHHHHHHhhccCCCccEEE
Q 020132           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVN-P-------TSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIA  106 (330)
Q Consensus        41 ~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~--~~~-~-------~~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv  106 (330)
                      -+||.-  .-+...|++.|-.+++......-  .++ +       ..||.    .+++.    ++++.+++  .|.+|++
T Consensus       170 ~~~E~n--~~lv~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~----d~i~~l~~--~G~mp~L  241 (520)
T KOG2436|consen  170 VSLEAN--LNLVINLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDV----DRIRHLLD--AGSMPLL  241 (520)
T ss_pred             chhhhh--hHHHHHHHHhhceeccccccccccceeecccccccccceeeeecccceech----hhhhhhhh--CCCchhe
Confidence            456773  33778889999999888766221  111 1       12221    23444    88888887  8999998


Q ss_pred             eeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhh
Q 020132          107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS  177 (330)
Q Consensus       107 ~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~  177 (330)
                      ... +.+..|+++|+   ++|..|..+|.+|+|+++++++|+ |.+-.     .+.+.++.++.+|...+.
T Consensus       242 ~sl-a~TaSGqvlnv---Na~~~a~elA~~L~~~kli~l~d~-g~~l~-----e~ge~~S~l~l~~e~~~l  302 (520)
T KOG2436|consen  242 RSL-AATASGQVLNV---NADEVAGELALALGPDKLILLMDK-GRILK-----ENGEDISSLILQEEDAGL  302 (520)
T ss_pred             hhh-cccCccceEEe---eHHHHhhHHHhccCcceeEEeccc-ccccc-----cCcccccccccchhHhhh
Confidence            886 88889999987   389999999999999999999997 55433     234556666655554444

>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a

Probab=95.52  E-value=0.026  Score=41.66  Aligned_cols=54  Identities=17%  Similarity=0.342  Sum_probs=42.3

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCC---cceeeeecchhhHHHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~s---e~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      +.+.||+++++++.|++.|+++.+++|...   ...++|.++..+.+..++.|.+.+
T Consensus         7 ~~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L   63 (76)
T cd04888           7 LEHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEEL   63 (76)
T ss_pred             ecCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHH
Confidence            346799999999999999999999997432   366888888888875666665544

a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK08841 aspartate kinase; Validated

Probab=95.10  E-value=0.031  Score=55.26  Aligned_cols=58  Identities=17%  Similarity=0.264  Sum_probs=50.0

Q ss_pred             CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHH
Q 020132          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAV  296 (330)
Q Consensus       230 ~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~a  296 (330)
                      ..+++|+..+|+++|++.|.       ..+++|+.|+++||++++++|  +..+++|++++.+..++
T Consensus       247 ~~i~~i~~~~~~~~i~v~~~-------~~~~i~~~l~~~~i~v~~i~~--~~~~~~~~v~~~~~~~~  304 (392)
T PRK08841        247 QAVCGIALQRDLALIEVESE-------SLPSLTKQCQMLGIEVWNVIE--EADRAQIVIKQDACAKL  304 (392)
T ss_pred             CcEEEEEEeCCeEEEEeccc-------hHHHHHHHHHHcCCCEEEEEe--cCCcEEEEECHHHHHHH
Confidence            46899999999999999763       368999999999999999986  46889999999887664

>COG3603 Uncharacterized conserved protein [Function unknown]

Probab=94.87  E-value=0.079  Score=43.23  Aligned_cols=69  Identities=17%  Similarity=0.226  Sum_probs=57.8

Q ss_pred             cccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHH
Q 020132          232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       232 ~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      ...|.+..+-..+.+.|.---+.+|+++.+.+.|+++||.|..+|.-   ..=-++|+++|.++|+++|.+.
T Consensus        54 p~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavSty---dtDhiLVr~~dLekAv~~L~ea  122 (128)
T COG3603          54 PDVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTY---DTDHILVREEDLEKAVKALEEA  122 (128)
T ss_pred             CcceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEec---cCceEEEehhhHHHHHHHHHHc
Confidence            44567778889999999877788999999999999999999999833   2234778999999999999874

>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains

Probab=94.04  E-value=0.12  Score=37.44  Aligned_cols=52  Identities=19%  Similarity=0.270  Sum_probs=38.3

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      +.+.||.++++.+.|+++|+||..+.-...+....+.+.-++.+++.+.|.+
T Consensus         8 v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~   59 (66)
T cd04908           8 LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKE   59 (66)
T ss_pred             EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHH
Confidence            7789999999999999999999766533332245555555666778877765

Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.

>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional

Probab=94.03  E-value=0.13  Score=39.69  Aligned_cols=52  Identities=19%  Similarity=0.203  Sum_probs=40.1

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeecc---hhhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVP---EKEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv~---~~d~~~av~~Lh~  302 (330)
                      ..+.||+++|+...|++.|.||+.++-+.++    .++++++.   +..+++..+.|++
T Consensus         9 VeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~K   67 (84)
T PRK13562          9 VADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQ   67 (84)
T ss_pred             EECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhC
Confidence            5678999999999999999999999987764    37778775   2333555655555

>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme

Probab=93.87  E-value=0.093  Score=34.48  Aligned_cols=48  Identities=25%  Similarity=0.450  Sum_probs=38.1

Q ss_pred             CCCCchhhhhhhhcccCccEEEEeccCC----cceeeeecchh-hHHHHHHHH
Q 020132          253 GVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEK-EVKAVAEAL  300 (330)
Q Consensus       253 ~~~gv~a~if~~L~~~gI~I~~Isq~~s----e~sIS~vv~~~-d~~~av~~L  300 (330)
                      +.+|.++++++.|+++++++..+.+...    ...+++.++.. +.+.+++.|
T Consensus         7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l   59 (60)
T cd02116           7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL   59 (60)
T ss_pred             CCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence            4689999999999999999999987543    36788888887 666665554

Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p

>PRK04435 hypothetical protein; Provisional

Probab=93.26  E-value=0.21  Score=42.54  Aligned_cols=63  Identities=14%  Similarity=0.326  Sum_probs=46.3

Q ss_pred             cceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCc---ceeeeecchhhHHHHHHHHHHHH
Q 020132          239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE---HSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       239 ~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se---~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      ...+.+.+.   +.+.||+++++++.+++.|+||..|+|+...   .+++|.++-.+....++.|-+.+
T Consensus        67 ~r~vtL~i~---l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L  132 (147)
T PRK04435         67 GKIITLSLL---LEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKL  132 (147)
T ss_pred             CcEEEEEEE---EecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHH
Confidence            455666665   5567999999999999999999999986532   55778887776664455444433

>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]

Probab=92.20  E-value=0.16  Score=49.74  Aligned_cols=74  Identities=16%  Similarity=0.341  Sum_probs=63.3

Q ss_pred             cCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHH--HHH-HHHHHHH
Q 020132          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVK--AVA-EALESKF  304 (330)
Q Consensus       229 ~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~--~av-~~Lh~~f  304 (330)
                      +..++.|+.++|+.++.|-...|....||++++|..|.+.||.|+.|+  +||.+||..++..+..  +.+ +.||+.+
T Consensus       381 k~~~TsI~lK~nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDvva--TSEV~iSltL~~~~~~sreliq~~l~~a~  457 (559)
T KOG0456|consen  381 KAGLTSIVLKRNVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVA--TSEVSISLTLDPSKLDSRELIQGELDQAV  457 (559)
T ss_pred             hccceEEEEeccEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEE--eeeEEEEEecChhhhhhHHHHHhhHHHHH
Confidence            356788999999999999999999999999999999999999999998  8899999999877554  333 5555544

>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB)

Probab=91.82  E-value=0.3  Score=36.33  Aligned_cols=57  Identities=25%  Similarity=0.390  Sum_probs=38.7

Q ss_pred             EEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC--cceeeeec--chh-hHHHHHHHHHH
Q 020132          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAV--PEK-EVKAVAEALES  302 (330)
Q Consensus       243 ~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s--e~sIS~vv--~~~-d~~~av~~Lh~  302 (330)
                      +|+++|.   ++||+.+++.+.|+++|+||.-++|..-  ...+.+.+  +.. +...+-+.|..
T Consensus         1 ~vtv~G~---DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~   62 (75)
T cd04870           1 LITVTGP---DRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLF   62 (75)
T ss_pred             CEEEEcC---CCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHH
Confidence            3678884   6899999999999999999999876543  34444443  333 34444444433

The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains.

>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A

Probab=91.74  E-value=0.3  Score=36.54  Aligned_cols=58  Identities=24%  Similarity=0.357  Sum_probs=38.9

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC--cceeeeecch--hhHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPE--KEVKAVAEALE  301 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s--e~sIS~vv~~--~d~~~av~~Lh  301 (330)
                      ..+|++.|.   ++||+.+.+++.|+++|.||.-+.|..-  ..++.+.++-  ++..++.+.|.
T Consensus         2 ~~vItv~G~---DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~   63 (76)
T PF13740_consen    2 QLVITVVGP---DRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALE   63 (76)
T ss_dssp             EEEEEEEEE-----TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHH
T ss_pred             EEEEEEEec---CCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHH
Confidence            357899985   6899999999999999999999988664  4455554433  34433444443

>PRK06737 acetolactate synthase 1 regulatory subunit; Validated

Probab=91.68  E-value=0.39  Score=36.32  Aligned_cols=52  Identities=13%  Similarity=0.194  Sum_probs=38.4

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeec--chhhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAV--PEKEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv--~~~d~~~av~~Lh~  302 (330)
                      ..++||+++|+...++..|.||+.++-+.++    .++++++  ++..+++..+.|++
T Consensus         9 v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~K   66 (76)
T PRK06737          9 IHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKK   66 (76)
T ss_pred             EecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhC
Confidence            4578999999999999999999999977543    2445553  44555666666655

>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed

Probab=91.09  E-value=0.41  Score=37.87  Aligned_cols=58  Identities=14%  Similarity=0.248  Sum_probs=40.3

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeecch-hhHHHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPE-KEVKAVAEALES  302 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv~~-~d~~~av~~Lh~  302 (330)
                      ..|++.   ..++||+++|+...|++.|.||+.++-+.++    .++++++.. ..++++++.|++
T Consensus         9 ~tisvl---v~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~K   71 (96)
T PRK08178          9 VILELT---VRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEK   71 (96)
T ss_pred             EEEEEE---EECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhC
Confidence            345555   5678999999999999999999999866552    456666662 334444444443

>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains

Probab=90.10  E-value=0.33  Score=34.27  Aligned_cols=51  Identities=16%  Similarity=0.309  Sum_probs=35.7

Q ss_pred             cccCCCCchhhhhhhhcccCccEEEEeccCC----cceeeeecchhhHHHHHHHHHH
Q 020132          250 GMAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       250 ~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s----e~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      .+.+.||.++++.+.|+++|+||..+.+...    ...+.|-++  +.+++.+.|.+
T Consensus         5 ~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve--~~~~~~~~L~~   59 (65)
T cd04882           5 EVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTE--DIEKAIEVLQE   59 (65)
T ss_pred             EeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeC--CHHHHHHHHHH
Confidence            3678999999999999999999987764322    233444444  46666666654

Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains.

>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein

Probab=89.22  E-value=0.27  Score=37.71  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS  280 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s  280 (330)
                      .+|++.|.   +.||+.+++.+.|+++|+||.-++|...
T Consensus         2 ~vl~i~g~---D~pGiva~vt~~la~~g~nI~~~~~~~~   37 (88)
T cd04872           2 AVITVVGK---DRVGIVAGVSTKLAELNVNILDISQTIM   37 (88)
T ss_pred             EEEEEEcC---CCCCHHHHHHHHHHHcCCCEEechhHhh
Confidence            46778874   5899999999999999999999998653

This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains.

>CHL00100 ilvH acetohydroxyacid synthase small subunit

Probab=88.85  E-value=1.1  Score=39.36  Aligned_cols=57  Identities=16%  Similarity=0.228  Sum_probs=43.3

Q ss_pred             EEeeecccccCCCCchhhhhhhhcccCccEEEEeccC----Ccceeeeecchh--hHHHHHHHHHH
Q 020132          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS----SEHSVCFAVPEK--EVKAVAEALES  302 (330)
Q Consensus       243 ~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~----se~sIS~vv~~~--d~~~av~~Lh~  302 (330)
                      .+++.+   .++||+++|+...|+++|+||..++-+.    ....++++++.+  ..++..+.|++
T Consensus         4 ~isvlv---~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~K   66 (174)
T CHL00100          4 TLSVLV---EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYK   66 (174)
T ss_pred             EEEEEE---eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHH
Confidence            356664   4789999999999999999999998654    245688888875  35566666666

>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase)

Probab=88.80  E-value=1.1  Score=33.06  Aligned_cols=33  Identities=21%  Similarity=0.405  Sum_probs=28.9

Q ss_pred             EEeeecccccCCCCchhhhhhhhcccCccEEEEecc
Q 020132          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA  278 (330)
Q Consensus       243 ~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~  278 (330)
                      +|++.|.   ++||+++++.+.|+++|+||.-++|.
T Consensus         1 ii~v~g~---D~~Giv~~it~~l~~~g~nI~~~~~~   33 (74)
T cd04875           1 ILTLSCP---DRPGIVAAVSGFLAEHGGNIVESDQF   33 (74)
T ss_pred             CEEEEcC---CCCCHHHHHHHHHHHcCCCEEeeeee
Confidence            3677774   68999999999999999999999876

This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional

Probab=88.71  E-value=0.84  Score=34.53  Aligned_cols=52  Identities=12%  Similarity=0.225  Sum_probs=37.9

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCC----cceeeeecch-hhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE-KEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~s----e~sIS~vv~~-~d~~~av~~Lh~  302 (330)
                      ..+.||+++|+...++..|.||+.++-+..    -.+|++++.+ ..+++..+.|++
T Consensus        10 v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql~kQL~K   66 (76)
T PRK11152         10 ARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLLSSQLNK   66 (76)
T ss_pred             EECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHHHHHHhc
Confidence            567899999999999999999999987663    2567777753 233444444444

>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB

Probab=88.70  E-value=1.2  Score=32.22  Aligned_cols=53  Identities=23%  Similarity=0.350  Sum_probs=38.8

Q ss_pred             cccCCCCchhhhhhhhcccCccEEEEeccCC----cceeeeecchhhHHHHHHHHHH
Q 020132          250 GMAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       250 ~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s----e~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      .+.+.||.++++.+.|+++|+||..+.....    ...+.|-++..+.+++.+.|.+
T Consensus         7 ~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~   63 (72)
T cd04883           7 RVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRR   63 (72)
T ss_pred             EECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHH
Confidence            3778999999999999999999987753222    3346666665666667766655

This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>COG4747 ACT domain-containing protein [General function prediction only]

Probab=87.71  E-value=1  Score=36.95  Aligned_cols=58  Identities=22%  Similarity=0.279  Sum_probs=47.3

Q ss_pred             eecccccCCCCchhhhhhhhcccCccEEEEeccCC-cceeeeecchhhHHHHHHHHHHH
Q 020132          246 VEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-EHSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       246 vvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s-e~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      +++-.|.+.||-+++|.+.|.+++||++.|--..+ ...--++++-+|.+++..+|.+.
T Consensus        71 VlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~  129 (142)
T COG4747          71 VLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDA  129 (142)
T ss_pred             EEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHc
Confidence            45556899999999999999999999988754333 35556778889999999999875

>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains

Probab=87.56  E-value=1.3  Score=31.38  Aligned_cols=28  Identities=25%  Similarity=0.578  Sum_probs=24.4

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEecc
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQA  278 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~  278 (330)
                      +.+.||.++++.+.++++|++|..+.+.
T Consensus         5 ~~d~~G~L~~i~~~i~~~~~nI~~i~~~   32 (73)
T cd04886           5 LPDRPGQLAKLLAVIAEAGANIIEVSHD   32 (73)
T ss_pred             eCCCCChHHHHHHHHHHcCCCEEEEEEE
Confidence            4678999999999999999999877653

This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK00194 hypothetical protein; Validated

Probab=87.44  E-value=0.56  Score=35.97  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=31.2

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccC
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS  279 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~  279 (330)
                      ...|++.|.   +.||+++++.+.|+++|+||.-++|..
T Consensus         3 ~~~ltv~g~---DrpGiva~vt~~la~~g~nI~~~~~~~   38 (90)
T PRK00194          3 KAIITVIGK---DKVGIIAGVSTVLAELNVNILDISQTI   38 (90)
T ss_pred             eEEEEEEcC---CCCCHHHHHHHHHHHcCCCEEehhhHh
Confidence            357788874   589999999999999999999998765

>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH)

Probab=87.29  E-value=1.1  Score=32.33  Aligned_cols=52  Identities=13%  Similarity=0.196  Sum_probs=36.4

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCC----cceeeeecch-hhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE-KEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~s----e~sIS~vv~~-~d~~~av~~Lh~  302 (330)
                      +.+.||.++++.+.|+++|++|..+.+...    ...+.+.++. ++.+++.+.|.+
T Consensus         8 ~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~   64 (69)
T cd04909           8 VPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE   64 (69)
T ss_pred             cCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence            678999999999999999999986654332    3334555542 366666666654

The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed

Probab=87.24  E-value=1.3  Score=38.45  Aligned_cols=53  Identities=15%  Similarity=0.320  Sum_probs=41.4

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeecc--hhhHHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVP--EKEVKAVAEALESK  303 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv~--~~d~~~av~~Lh~~  303 (330)
                      ..+.||+++++...|+++|+||..++-+.++    ..+++.++  +..+++..+.|++.
T Consensus         9 veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KL   67 (161)
T PRK11895          9 VENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKL   67 (161)
T ss_pred             EcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhcc
Confidence            5689999999999999999999988865543    34667765  45677777777774

>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=86.98  E-value=1.9  Score=32.05  Aligned_cols=56  Identities=23%  Similarity=0.365  Sum_probs=38.0

Q ss_pred             EeeecccccCCCCchhhhhhhhcccCccEEEEeccCCc----------ceeeeecchh-hHHHHHHHHHH
Q 020132          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----------HSVCFAVPEK-EVKAVAEALES  302 (330)
Q Consensus       244 IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----------~sIS~vv~~~-d~~~av~~Lh~  302 (330)
                      |++.|.   +.||+.+++.+.|+++|+||.-+++.+.+          ..+.+-++.. +..+..+.|+.
T Consensus         2 l~v~g~---D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~   68 (81)
T cd04869           2 VEVVGN---DRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEE   68 (81)
T ss_pred             EEEEeC---CCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHH
Confidence            556664   58999999999999999999999874332          2444555543 34444444444

This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in

>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate

Probab=86.82  E-value=0.95  Score=31.27  Aligned_cols=50  Identities=18%  Similarity=0.228  Sum_probs=32.5

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc-ceeeeecchhhHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE-HSVCFAVPEKEVKAVAEAL  300 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se-~sIS~vv~~~d~~~av~~L  300 (330)
                      +.+.||.++++.+.|.++|+||..+.-.... ..-.+.+.-++.++|.+.|
T Consensus         5 ~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l   55 (56)
T cd04889           5 VENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL   55 (56)
T ss_pred             eCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence            5688999999999999999999766522222 1122222333466666554

Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A

>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH)

Probab=85.27  E-value=1.6  Score=32.18  Aligned_cols=51  Identities=22%  Similarity=0.317  Sum_probs=34.7

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCC----cceeeeec------chhhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAV------PEKEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~s----e~sIS~vv------~~~d~~~av~~Lh~  302 (330)
                      +.+.||.++++++.++++|+|+..|. +.+    .-...|++      .+.+.+++++.|.+
T Consensus         6 l~d~pG~L~~vL~~f~~~~vni~~I~-Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~   66 (75)
T cd04880           6 LKNKPGALAKALKVFAERGINLTKIE-SRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR   66 (75)
T ss_pred             eCCcCCHHHHHHHHHHHCCCCEEEEE-eeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence            45689999999999999999999994 332    11123332      24456666666655

ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech

>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains

Probab=84.62  E-value=1.8  Score=32.30  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=30.3

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccC
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQAS  279 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~  279 (330)
                      .+|++.|.   +.||+.+++.+.|+++|.||.-++|..
T Consensus         2 ~iltv~g~---Dr~GiVa~vs~~la~~g~nI~d~~q~~   36 (77)
T cd04893           2 LVISALGT---DRPGILNELTRAVSESGCNILDSRMAI   36 (77)
T ss_pred             EEEEEEeC---CCChHHHHHHHHHHHcCCCEEEceeeE
Confidence            35778874   689999999999999999999998864

This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int

>TIGR00119 acolac_sm acetolactate synthase, small subunit

Probab=84.42  E-value=2.1  Score=36.98  Aligned_cols=53  Identities=17%  Similarity=0.322  Sum_probs=38.0

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeecchhhHHHHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ..+.||+++++...|+++|+||..++-+.++    ..+++.++. + ++.++.|.+.+.
T Consensus         8 ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~-d-~~~i~qi~kQl~   64 (157)
T TIGR00119         8 VENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVG-D-DKVLEQITKQLN   64 (157)
T ss_pred             EcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEEC-C-HHHHHHHHHHHh
Confidence            5678999999999999999999988765543    346677754 2 344555555443

acetohydroxyacid synthase is a synonym.

>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit

Probab=81.45  E-value=1.8  Score=30.49  Aligned_cols=52  Identities=13%  Similarity=0.223  Sum_probs=37.6

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCC----cceeeeecchhhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~s----e~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      ..+.||.++++.+.|+++|+++..+.+...    ...+.+.++..+..++++.|.+
T Consensus         6 ~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~   61 (71)
T cd04903           6 HKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKK   61 (71)
T ss_pred             eCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHc
Confidence            457899999999999999999987764431    2335667766666666666654

The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains.

>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed

Probab=81.03  E-value=3.6  Score=39.07  Aligned_cols=35  Identities=17%  Similarity=0.359  Sum_probs=31.6

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEecc
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQA  278 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~  278 (330)
                      .++|+++|.   ++||+.+++.+.|+++|+||.-++|-
T Consensus         9 ~~iitv~G~---Dr~GIVA~Vs~~Lae~g~NI~disq~   43 (289)
T PRK13010          9 SYVLTLACP---SAPGIVAAVSGFLAEKGCYIVELTQF   43 (289)
T ss_pred             CEEEEEECC---CCCCcHHHHHHHHHHCCCCEEecccc
Confidence            468999985   68999999999999999999999984

>COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism]

Probab=80.56  E-value=2.8  Score=36.36  Aligned_cols=53  Identities=13%  Similarity=0.266  Sum_probs=43.0

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCC----cceeeeecch--hhHHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASS----EHSVCFAVPE--KEVKAVAEALESK  303 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~s----e~sIS~vv~~--~d~~~av~~Lh~~  303 (330)
                      ..+.||+++|+...++..|.||++++-+.+    ...+++++.-  ...+++.+.||+.
T Consensus        11 v~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kL   69 (163)
T COG0440          11 VENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKL   69 (163)
T ss_pred             EECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhh
Confidence            457899999999999999999999986655    4567777776  3488888888874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	330
2hmf_A	469	Structure Of A Threonine Sensitive Aspartokinase Fr		2e-43
2hmf_A	469	Structure Of A Threonine Sensitive Aspartokinase Fr		5e-05
3c1n_C	473	Crystal Structure Of Allosteric Inhibition Threonin		2e-43
3c1n_C	473	Crystal Structure Of Allosteric Inhibition Threonin		5e-05
2j0x_A	449	Crystal Structure Of E. Coli Aspartokinase Iii In C		2e-26
2cdq_A	510	Crystal Structure Of Arabidopsis Thaliana Aspartate		8e-25
3tvi_A	446	Crystal Structure Of Clostridium Acetobutylicum Asp		7e-18
3ab4_A	421	Crystal Structure Of Feedback Inhibition Resistant		3e-13
3aaw_A	421	Crystal Structure Of Aspartate Kinase From Coryneba		3e-13
3l76_A	600	Crystal Structure Of Aspartate Kinase From Synechoc		4e-13
2ij9_A	219	Crystal Structure Of Uridylate Kinase From Archaeog		4e-04
3ek5_A	243	Unique Gtp-Binding Pocket And Allostery Of Ump Kina		7e-04

>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/260 (39%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 114 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 173
Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 174 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 229
Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 230 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 289
Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 290 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 342
Query: 267 DVGANVIMISQASSEHSVCF 286
           +   NVI+ISQ SSE ++  
Sbjct: 343 EEEVNVILISQGSSETNISL 362

>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
           ++ +++V G GM G  G A  IF AV + GAN+ MI+Q SSE ++ F
Sbjct: 402 DVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISF 448

>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473

Iteration: 1
 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/260 (39%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
           G  T    D+++  GE  S+ +L+  +R  G     ++  E  I+   +         E 
Sbjct: 115 GELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEV 174
Query: 89  EKRLEKWFSQS--PSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWT 146
           ++RL     +   P    + TGFI +T +   TTL R GSD+SAA++G  L A  + IWT
Sbjct: 175 KERLLPLLKEGIIP----VVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230
Query: 147 DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFN 206
           DV GVY+ DPR V  A  +  LSY EA E++YFGA VLHPRTI P M   IPI+++N F 
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290
Query: 207 LSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVK 266
               G +I         D ++ DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ 
Sbjct: 291 PESEGTLITN-------DMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALG 343
Query: 267 DVGANVIMISQASSEHSVCF 286
           +   NVI+ISQ SSE ++  
Sbjct: 344 EEEVNVILISQGSSETNISL 363

>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCF 286
           ++ +++V G GM G  G A  IF AV + GAN+ MI+Q SSE ++ F
Sbjct: 403 DVCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISF 449

>pdb|2J0X|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex With Lysine And Aspartate (T-State) Length = 449

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 79/250 (31%), Positives = 129/250 (51%), Gaps = 14/250 (5%)
Query: 34  SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLE 93
           + TD +V HGEL S  +   ++R+  +  +W D R+V+  N     + +PD +   +   
Sbjct: 109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTN-DRFGRAEPDIAALAELAA 167
Query: 94  KWFSQSPSNTIIAT-GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
                  +  ++ T GFI S      TTL R GSD++AA++   L A +V IWTDV G+Y
Sbjct: 168 LQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIY 227
Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           + DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G 
Sbjct: 228 TTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGT 287
Query: 213 MICRPPVDENEDEQIIDSPV-KGFATIDNLALVNVEGTGMAGVPGTANAIFG--AVKDVG 269
           ++C      N+ E   + P+ +  A   N  L+ +    M    G    +FG  A  ++ 
Sbjct: 288 LVC------NKTE---NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338
Query: 270 ANVIMISQAS 279
            ++I  S+ S
Sbjct: 339 VDLITTSEVS 348

>pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase Complexed With Lysine And S-Adenosylmethionine Length = 510

Iteration: 1
 Score =  110 bits (276), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 71/254 (27%), Positives = 126/254 (49%), Gaps = 14/254 (5%)
Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSNQVDPDFSESEKRLE 93
           D++V  GE  S ++ AA +   G+  +  D  E+  +     T+ + ++  +    KRL 
Sbjct: 141 DYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLY 200
Query: 94  KWFSQSPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
             +   P+  I+ TGF+         TTL R GSD +A  +G  L   ++ +W DVDGV 
Sbjct: 201 DDWMHDPAVPIV-TGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVL 259
Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGI 212
           + DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +N   PG 
Sbjct: 260 TCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGT 319
Query: 213 MICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANV 272
           +I +          +  S +       N+ ++++  T M G  G    +F   +++G +V
Sbjct: 320 IITKT-------RDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISV 372
Query: 273 IMISQASSEHSVCF 286
            ++  A+SE S+  
Sbjct: 373 DVV--ATSEVSISL 384

>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate Kinase (Caak): An Important Allosteric Enzyme For Industrial Amino Acids Production Length = 446

Iteration: 1
 Score = 87.8 bits (216), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 100/226 (44%), Gaps = 16/226 (7%)
Query: 22  FLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQV 81
           +L  V       + +D+    GE  +  +LA       ++ +++D  EV+  + +     
Sbjct: 95  YLEKVKKNIENGASSDYAASRGEYLNGVILAKY-----LNAEFIDAAEVIFFDKSGCFDE 149
Query: 82  DPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQ 141
              +   EK  EK  S    N  +  GF  S+ +    T  R GSD + +I+ A + A  
Sbjct: 150 KKSY---EKIKEKVLS---CNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNADL 203
Query: 142 VTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
              WTDV G   ADPR V     +  +SY+E  E+SY GA VLH   I PV    IPI I
Sbjct: 204 YENWTDVSGFLXADPRIVENPKTISKISYKELRELSYXGATVLHEEAIFPVKDSGIPINI 263
Query: 202 RNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVE 247
           +N    S PG +I       +  ++I    + G A   N  ++ +E
Sbjct: 264 KNTNKPSDPGTLIL-----SDTHKEINLGTITGIAGKKNFTVIAIE 304

>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421

Iteration: 1
 Score = 72.8 bits (177), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178
           TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  A  L  LS++E  E++ 
Sbjct: 147 TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAA 206
Query: 179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238
            G+ +L  R++     +++P+ +R+ ++ + PG +I        ED  + ++ + G AT 
Sbjct: 207 VGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GSMEDIPVEEAVLTGVATD 261
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            + A V V   G++  PG A  +F A+ D   N+ M+ Q
Sbjct: 262 KSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298

>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421

Iteration: 1
 Score = 72.4 bits (176), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 89/159 (55%), Gaps = 7/159 (4%)
Query: 119 TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY 178
           TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  A  L  LS++E  E++ 
Sbjct: 147 TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAA 206
Query: 179 FGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATI 238
            G+ +L  R++     +++P+ +R+ ++ + PG +I        ED  + ++ + G AT 
Sbjct: 207 VGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GSMEDIPVEEAVLTGVATD 261
Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            + A V V   G++  PG A  +F A+ D   N+ M+ Q
Sbjct: 262 KSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQ 298

>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis Length = 600

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 5/131 (3%)
Query: 91  RLEKWFSQSPSNTIIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDV 148
           RLE    +     ++  GF  I+S      TTL R GSD SA  + A L+A    I+TDV
Sbjct: 120 RLEHHLREG--KVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDV 177
Query: 149 DGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLS 208
            G+ + DPR V EA ++  ++  E  E++  GA VLHPR +     Y IP+V+R+ ++  
Sbjct: 178 PGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-D 236
Query: 209 VPGIMICRPPV 219
            PG  +  PPV
Sbjct: 237 EPGTKVVAPPV 247

>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus Fulgidus Length = 219

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 43/167 (25%)
Query: 10  ELSYEFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTRE 69
           +L+ E+I+S            A+E+F D++                   GI    ++   
Sbjct: 43  KLAREYIKSAREL-------GASETFCDYI-------------------GIAATRLNAML 76
Query: 70  VLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFS 129
           ++   P+++ +V  DF E+E+ L K +       ++  G           T     +D +
Sbjct: 77  LISAIPSAAKKVPVDFMEAEE-LSKLY-----RVVVMGG-----------TFPGHTTDAT 119
Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
           AA++   ++A      T+VDGVYSADP+  + AV    LS Q+  E+
Sbjct: 120 AALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166

>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From A Gram- Negative Phytopathogen Bacterium Length = 243

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/86 (33%), Positives = 42/86 (48%), Gaps = 11/86 (12%)
Query: 134 GALLRAHQVTI-----WTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRT 188
           GA LRA ++        T VDGVY  DP+K S+AV   +L+Y E       G  V+    
Sbjct: 148 GAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAA 204
Query: 189 IIPVMRYDIPIVIRNIFNLSVPGIMI 214
                  D+P+    IF +S PG+++
Sbjct: 205 FALARDSDLPL---RIFGMSEPGVLL 227

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	1e-118
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	3e-13
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	1e-108
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	1e-103
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	1e-102
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	3e-11
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	2e-39
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	4e-05
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	2e-38
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	2e-06
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	9e-06
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	2e-04
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	6e-17
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	6e-14
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	2e-11
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	2e-11
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	6e-11
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	3e-10
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	1e-09
2ij9_A	219	Uridylate kinase; structural genomics, protein str	2e-09
3nwy_A	281	Uridylate kinase; allosterically activated form, A	4e-09
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	1e-08
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	1e-08
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	6e-08
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	2e-07
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	2e-06
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	6e-06
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	2e-05
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	3e-05
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	2e-04
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	2e-04

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449

 Score =  321 bits (825), Expect = e-108
 Identities = 82/290 (28%), Positives = 135/290 (46%), Gaps = 13/290 (4%)

Query: 23  LSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVD 82
           L+   +   + + TD +V HGEL S  +   ++R+  +  +W D R+V+  N       +
Sbjct: 98  LAEAAALATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGR-AE 156

Query: 83  PDFSESEKRLEKWFSQSPSNTI-IATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQ 141
           PD +   +          +  + I  GFI S      TTL R GSD++AA++   L A +
Sbjct: 157 PDIAALAELAALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASR 216

Query: 142 VTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVI 201
           V IWTDV G+Y+ DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ +
Sbjct: 217 VDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFV 276

Query: 202 RNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAI 261
            +  +    G ++C    +            +  A   N  L+ +    M    G    +
Sbjct: 277 GSSKDPRAGGTLVCNKTENPP--------LFRALALRRNQTLLTLHSLNMLHSRGFLAEV 328

Query: 262 FGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL-ESKFREALNA 310
           FG +     +V +I+  +SE SV   +      +  + L        L+A
Sbjct: 329 FGILARHNISVDLIT--TSEVSVALTLDTTGSTSTGDTLLTQSLLMELSA 376

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446

 Score =  310 bits (796), Expect = e-103
 Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 18/294 (6%)

Query: 21  NFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ 80
            +L  V       + +D+    GE  +  +LA       ++ +++D  EV+  + +    
Sbjct: 94  YYLEKVKKNIENGASSDYAASRGEYLNGVILAKY-----LNAEFIDAAEVIFFDKSGC-- 146

Query: 81  VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAH 140
              D  +S +++++       N  +  GF  S+ +    T  R GSD + +I+ A + A 
Sbjct: 147 --FDEKKSYEKIKEKVL--SCNKAVIPGFYGSSFNGDVKTFSRGGSDVTGSIISAGVNAD 202

Query: 141 QVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIV 200
               WTDV G   ADPR V     +  +SY+E  E+SY GA VLH   I PV    IPI 
Sbjct: 203 LYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPIN 262

Query: 201 IRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANA 260
           I+N    S PG +I      E          + G A   N  ++ +E   +    G    
Sbjct: 263 IKNTNKPSDPGTLILSDTHKEIN-----LGTITGIAGKKNFTVIAIEKALLNSEVGFCRK 317

Query: 261 IFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLS 314
           I   ++  G +   +   S   SV   + + ++    + +  + ++  N   + 
Sbjct: 318 ILSILEMYGVSFEHMP--SGVDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIE 369

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score =  307 bits (789), Expect = e-102
 Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 12/290 (4%)

Query: 29  GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSES 88
              T    D++V  GE  S ++ AA +   G+  +  D  E+  +        D   +  
Sbjct: 133 KELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATY 192

Query: 89  EKRLEKWFSQ--SPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW 145
               ++ +          I TGF+         TTL R GSD +A  +G  L   ++ +W
Sbjct: 193 PAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVW 252

Query: 146 TDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIF 205
            DVDGV + DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +
Sbjct: 253 KDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSY 312

Query: 206 NLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAV 265
           N   PG +I        +   +  S +       N+ ++++  T M G  G    +F   
Sbjct: 313 NPKAPGTIIT-------KTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIF 365

Query: 266 KDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNAGRLSQ 315
           +++G +V +++  +SE S+   +   ++ +     +          +++ 
Sbjct: 366 EELGISVDVVA--TSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAV 413

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 238 IDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVA 297
           +   A++++ G  +          F  +   G NV MISQ +S+ ++ F V E E +   
Sbjct: 417 LKGRAIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCV 475

Query: 298 EALESKFREA 307
           +AL   F E+
Sbjct: 476 QALHKSFFES 485

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score =  142 bits (361), Expect = 2e-39
 Identities = 64/218 (29%), Positives = 107/218 (49%), Gaps = 16/218 (7%)

Query: 104 IIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE 161
            I  GF  +     ++ TTL R GSD +A  + A L A    I++DVDGVY+ADPR V  
Sbjct: 131 CIVAGFQGVNKETRDV-TTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPN 189

Query: 162 AVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE 221
           A  L  LS++E  E++  G+ +L  R++     +++P+ +R+ ++ + PG +I       
Sbjct: 190 AQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIA----GS 244

Query: 222 NEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE 281
            ED  + ++ + G AT  + A V V   G++  PG A  +F A+ D   N+ M+ Q    
Sbjct: 245 MEDIPVEEAVLTGVATDKSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQNVFS 302

Query: 282 HS-----VCFAVPEKEVKAVAEALESKFREALNAGRLS 314
                  + F  P  + +   E L+ K +   N   + 
Sbjct: 303 VEDGTTDITFTCPRSDGRRAMEILK-KLQVQGNWTNVL 339

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
           D +  V++ G GM   PG       A++DV  N+ +IS  +SE  +   + E ++ A A 
Sbjct: 342 DQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAAR 399

Query: 299 ALESKF 304
           AL  +F
Sbjct: 400 ALHEQF 405

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score =  142 bits (361), Expect = 2e-38
 Identities = 58/209 (27%), Positives = 97/209 (46%), Gaps = 9/209 (4%)

Query: 104 IIATGF--IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE 161
           ++  GF  I+S      TTL R GSD SA  + A L+A    I+TDV G+ + DPR V E
Sbjct: 131 VVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPE 190

Query: 162 AVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE 221
           A ++  ++  E  E++  GA VLHPR +     Y IP+V+R+ ++   PG  +  PPV  
Sbjct: 191 AQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-DEPGTKVVAPPVQN 249

Query: 222 NEDEQIIDSP-VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS 280
                +  +  V G     + A V +    +   PG A+ +F  +     ++ +I Q+  
Sbjct: 250 RSLVGLEIAKAVDGVEYDADQAKVAL--LRVPDRPGVASKLFRDIAQQQVDIDLIIQSIH 307

Query: 281 EHS---VCFAVPEKEVKAVAEALESKFRE 306
           + +   + F V +  +        +    
Sbjct: 308 DGNSNDIAFTVVKDLLNTAEAVTSAIAPA 336

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 11/108 (10%)

Query: 215 CRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIM 274
                 +N+ +      V+G A   + A + +    +   PG A  +F A+ +   +V M
Sbjct: 418 VTLSPPKNQTDTSHLPAVRGVALDQDQAQIAI--RHVPDRPGMAAQLFTALAEANISVDM 475

Query: 275 ISQASSEHS--------VCFAVPEKEVKAVAEALESKFREALNAGRLS 314
           I Q+             + F V E +       L+    +      + 
Sbjct: 476 IIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQ-PLIKDWLDAAIV 522

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 46.4 bits (111), Expect = 9e-06
 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
             +A + + G GM G PG A  +F  + DVG N+ MIS  +SE  V   + +++      
Sbjct: 353 KGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIS--TSEVKVSCVIDQRDADRAIA 410

Query: 299 ALESKFRE 306
           AL + F  
Sbjct: 411 ALSNAFGV 418

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAE 298
             +A V++ G+GM G PG A   F A+     N+ MI+  +SE  +   VP+       +
Sbjct: 525 KAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSEIKISCVVPQDRGVDALK 582

Query: 299 ALESKF 304
           A  S F
Sbjct: 583 AAHSAF 588

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157

 Score = 75.7 bits (187), Expect = 6e-17
 Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV 288
              +K  A  D + ++ V+ +           +F   +     V M++ +    S+    
Sbjct: 6   KDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTID- 64

Query: 289 PEKEVKAVAEALE 301
            +K +  +  AL 
Sbjct: 65  NDKNLPDIVRALS 77

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157

 Score = 67.6 bits (166), Expect = 6e-14
 Identities = 19/89 (21%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 219 VDENEDEQIIDSPVKGFATID---NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMI 275
           +D +++   I   +     +    ++ ++ + G       G    I  A+K V   V MI
Sbjct: 63  IDNDKNLPDIVRALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINALKGV--PVRMI 120

Query: 276 SQASSEHSVCFAVPEKEVKAVAEALESKF 304
           S   S ++V   V  ++ K    AL +K 
Sbjct: 121 SYGGSNYNVSVLVKAEDKKKALIALSNKL 149

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244

 Score = 62.4 bits (152), Expect = 2e-11
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D  AA++   L+A  + + T+VDGVY+ADP+K   A  ++ +  +E  E+   G  +   
Sbjct: 140 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIV--GKGIEKA 197

Query: 187 RTIIPV--------MRYDIPIVIRNIFNLSVPGIMI 214
            +   +         R  I  +   +        + 
Sbjct: 198 GSSSVIDPLAAKIIARSGIKTI---VIGKEDAKDLF 230

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226

 Score = 61.7 bits (150), Expect = 2e-11
 Identities = 18/94 (19%), Positives = 38/94 (40%), Gaps = 12/94 (12%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +   AA++     +  + + T+VDGVY  DPR  ++  ++  L+ Q+  ++     +V  
Sbjct: 119 TAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQ- 177

Query: 186 PRTIIPV--------MRYDIPIVIRNIFNLSVPG 211
             T   +         R  I ++   + N     
Sbjct: 178 AGTYELLDPLAIKIVERSKIRVI---VMNYRKLN 208

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240

 Score = 60.7 bits (147), Expect = 6e-11
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +A +    + +  +   T VDG+Y  DP K  +A  L TLSY +A         V+ 
Sbjct: 144 TDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMD 200

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
              I       +PIV   + N+   G
Sbjct: 201 DTAISLAKDNKLPIV---VCNMFKKG 223

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270

 Score = 58.7 bits (142), Expect = 3e-10
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D    ++       Q+    D DG+Y+A+P+   +A  +  +S  E         ++L  
Sbjct: 170 DAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKG-LHDSILEF 228

Query: 187 R--TIIPVMRYDIPIVIRNIFNLSVPG 211
               ++   ++   +    + N  VPG
Sbjct: 229 PVLDLLQSAQHVREVQ---VVNGLVPG 252

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276

 Score = 57.3 bits (138), Expect = 1e-09
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 6/113 (5%)

Query: 102 NTIIATGFIASTPDNIPTTLKRDGS-DFSAAIMGALLRAHQVTIWTDVDGVYSADPR--K 158
             ++ + F        P +       D  A ++     A  +TI  +VDG+Y+ADP    
Sbjct: 145 RAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPD 204

Query: 159 VSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
             +A  L   S  +  +             ++   R+   +    + N  VPG
Sbjct: 205 RGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQ---VVNGLVPG 254

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 6/82 (7%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM------SYF 179
           +D +AA++   ++A      T+VDGVYSADP+  + AV    LS Q+  E+         
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175

Query: 180 GANVLHPRTIIPVMRYDIPIVI 201
              V+       + R  I   +
Sbjct: 176 TNVVIDLLAAKIIERSKIKTYV 197

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281

 Score = 55.8 bits (134), Expect = 4e-09
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA     + A  V +   VDGV++ DPR   EA +L  +S++E  +    G  V  
Sbjct: 185 TDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDR---GLRVAD 241

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                  M   +PI+   +FNL   G
Sbjct: 242 ATAFSLCMDNGMPIL---VFNLLTDG 264

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256

 Score = 54.2 bits (130), Expect = 1e-08
 Identities = 19/87 (21%), Positives = 36/87 (41%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D  AAI  A   +  + +  + VDGVY +DP+    A     +++  A         V+
Sbjct: 159 TDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVM 215

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
               +      +I ++   +FN+  P 
Sbjct: 216 DATALALCQENNINLL---VFNIDKPN 239

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243

 Score = 54.1 bits (130), Expect = 1e-08
 Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 27/179 (15%)

Query: 33  ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRL 92
               D +     + +A  +   + K G                 S+ +++    +  +R 
Sbjct: 73  RVTGDHMGMLATVINALAMQDALEKLGAKV-----------RVMSAIKINDVCEDFIRRR 121

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVY 152
                +     I A G                  D  AA+    + A  +   T VDGVY
Sbjct: 122 AIRHLEKGRIAIFAAGTGNPFFTT----------DSGAALRAIEIGADLLLKATKVDGVY 171

Query: 153 SADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
             DP+K S+AV   +L+Y E       G  V+           D+P+    IF +S PG
Sbjct: 172 DKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAAFALARDSDLPLR---IFGMSEPG 224

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239

 Score = 51.8 bits (124), Expect = 6e-08
 Identities = 24/86 (27%), Positives = 40/86 (46%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +AA+ GA +    +   T+VDGVY+ADP+K   A    T+++ EA         V+ 
Sbjct: 143 TDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMD 199

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                      + IV   +F ++  G
Sbjct: 200 ATAFALCRERKLNIV---VFGIAKEG 222

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247

 Score = 50.3 bits (120), Expect = 2e-07
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 6/86 (6%)

Query: 126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLH 185
           +D +A + G  + A  V   T VDGVY  DP K  +A + + LSY E  +       V+ 
Sbjct: 144 TDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMD 200

Query: 186 PRTIIPVMRYDIPIVIRNIFNLSVPG 211
                    + +PI    +FN+  PG
Sbjct: 201 LSAFTLARDHGMPIR---VFNMGKPG 223

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D +AA+  A + A  + +  + VDGVY+ADP+K + AV    L++ E  +    G  ++
Sbjct: 143 TDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIM 199

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
                   M  DI +V   +FN++  G
Sbjct: 200 DATASTLSMDNDIDLV---VFNMNEAG 223

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.4 bits (122), Expect = 3e-07
 Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 60/206 (29%)

Query: 44  ELWSAQMLAAVVRKNGIDCK-WMDTREVLIVN--------PTSSNQVDPDFSESEKR--L 92
            + +A+   A      + CK  + TR   + +          S +      +  E +  L
Sbjct: 252 NVQNAKAWNAF----NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307

Query: 93  EKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTI--WTDVDG 150
            K+                  P ++P  +    +    +I+   +R    T   W  V+ 
Sbjct: 308 LKYLDCR--------------PQDLPREVL-TTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 151 VYSADPRKVSEAVILRTLSYQEAWEM-SYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
                  K++  +I  +L+  E  E    F          + V      I          
Sbjct: 353 ------DKLTT-IIESSLNVLEPAEYRKMFDR--------LSVFPPSAHI---------- 387

Query: 210 PGIMICR--PPVDENEDEQIIDSPVK 233
           P I++      V +++   +++   K
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHK 413

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 18/87 (20%), Positives = 38/87 (43%), Gaps = 7/87 (8%)

Query: 126 SDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVL 184
           +D+ +      + +  + +    VDGV+++DP+    A + R L+Y +          V+
Sbjct: 149 TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVM 205

Query: 185 HPRTIIPVMRYDIPIVIRNIFNLSVPG 211
               ++    Y++P     +FN   PG
Sbjct: 206 DQAALLLARDYNLPAH---VFNFDEPG 229

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} Length = 269

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 14/47 (29%), Positives = 23/47 (48%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEM 176
                  L   +V + TDVDGVY+ +P+K  +A +L  +   +  E 
Sbjct: 164 INHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLES 210

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} Length = 167

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 29/100 (29%), Positives = 43/100 (43%), Gaps = 10/100 (10%)

Query: 219 VDENED-EQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ 277
            +E+++ E+     V G A   N A +NV   G+   PG A  I GAV D    V MI Q
Sbjct: 5   FEEDDNMERAA---VTGIAFDKNQARINV--RGVPDKPGVAYQILGAVADANIEVDMIIQ 59

Query: 278 ASSEHS---VCFAVPEKEVKAVAEALESKFREALNAGRLS 314
                      F VP  + K   E L  + ++++ A  + 
Sbjct: 60  NVGSEGTTDFSFTVPRGDYKQTLEILS-ERQDSIGAASID 98

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* Length = 249

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 1/52 (1%)

Query: 130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWE-MSYFG 180
            A M  LL+       TDVDG+YS DP++  +AV+LR +     ++ +    
Sbjct: 151 MADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDTNITFDRVQNDV 202

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* Length = 178

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 23/88 (26%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHS-----VCF 286
           + G AT  + A V V   G++  PG A  +F A+ D   N+ M+ Q  S        + F
Sbjct: 6   LTGVATDKSEAKVTV--LGISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITF 63

Query: 287 AVPEKEVKAVAEALESKFREALNAGRLS 314
             P  + +   E L+ K +   N   + 
Sbjct: 64  TCPRSDGRRAMEILK-KLQVQGNWTNVL 90

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} Length = 181

 Score = 40.6 bits (96), Expect = 2e-04
 Identities = 22/88 (25%), Positives = 35/88 (39%), Gaps = 8/88 (9%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHS-----VCF 286
           + G A   + A V +   G+  +PG A  +F AV D   N+ M+ Q  S+       + F
Sbjct: 7   LTGVAHDRSEAKVTI--VGLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITF 64

Query: 287 AVPEKEVKAVAEALESKFREALNAGRLS 314
                   A  E L+   R  +   +L 
Sbjct: 65  TCSRDVGPAAVEKLD-SLRNEIGFSQLL 91

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	100.0
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	100.0
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	100.0
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	100.0
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	100.0
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	100.0
2jjx_A	255	Uridylate kinase, UMP kinase; structural genomics,	99.87
1ybd_A	239	Uridylate kinase; alpha/beta/alpha fold, hexamer,	99.87
2j4j_A	226	Uridylate kinase; transferase, nucleoside monophos	99.87
2a1f_A	247	Uridylate kinase; PYRH, structural genomics, PSI,	99.86
4a7w_A	240	Uridylate kinase; transferase; HET: GTP; 1.80A {He	99.86
3ek6_A	243	Uridylate kinase; UMPK unique GTP B site, alloster	99.85
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	99.85
3ll9_A	269	Isopentenyl phosphate kinase; mevalonate biosynthe	99.84
2ap9_A	299	NAG kinase, acetylglutamate kinase, AGK; structura	99.84
1z9d_A	252	Uridylate kinase, UK, UMP kinase; structural genom	99.84
2ogx_A	276	Molybdenum storage protein subunit alpha; open alp	99.83
2brx_A	244	Uridylate kinase; UMP kinase, amino acid kinase, p	99.82
2va1_A	256	Uridylate kinase; UMPK, transferase, pyrimidine bi	99.81
2ako_A	251	Glutamate 5-kinase; structural genomics, PSI, prot	99.81
3d40_A	286	FOMA protein; fosfomycin, antibiotic resistance, k	99.8
2egx_A	269	Putative acetylglutamate kinase; struc genomics, N	99.8
3nwy_A	281	Uridylate kinase; allosterically activated form, A	99.8
2ij9_A	219	Uridylate kinase; structural genomics, protein str	99.79
1gs5_A	258	Acetylglutamate kinase; carbamate kinase, amino ac	99.78
2rd5_A	298	Acetylglutamate kinase-like protein; protein-prote	99.76
2ogx_B	270	Molybdenum storage protein subunit beta; open alph	99.76
2v5h_A	321	Acetylglutamate kinase; amino-acid biosynthesis, t	99.76
2bty_A	282	Acetylglutamate kinase; N-acetyl-L-glutamate kinas	99.73
3ll5_A	249	Gamma-glutamyl kinase related protein; alternate m	99.73
2buf_A	300	Acetylglutamate kinase; acetyglutamate kinase, ADP	99.7
3l86_A	279	Acetylglutamate kinase; ARGB, amino-acid biosynthe	99.7
1e19_A	314	Carbamate kinase-like carbamoylphosphate synthetas	99.68
3k4o_A	266	Isopentenyl phosphate kinase; small molecule kinas	99.67
2e9y_A	316	Carbamate kinase; transferase, structural genomics	99.56
3d2m_A	456	Putative acetylglutamate synthase; protein-COA-Glu	99.54
3zzh_A	307	Acetylglutamate kinase; transferase, arginine bios	99.54
2we5_A	310	Carbamate kinase 1; arginine catabolism, arginine	99.51
4ab7_A	464	Protein Arg5,6, mitochondrial; transferase, argini	99.51
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	99.5
3s6g_A	460	N-acetylglutamate kinase / N-acetylglutamate SYNT;	99.46
3kzf_A	317	Carbamate kinase; arginine dihydrolase pathway, gi	99.44
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	99.44
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	99.36
3s6k_A	467	Acetylglutamate kinase; synthase, transferase; 2.8	99.34
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	99.33
3c1m_A	473	Probable aspartokinase; allosteric inhibition, thr	99.28
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	99.28
3l76_A	600	Aspartokinase; allostery, ACT domains, kinase tran	99.2
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	99.2
4axs_A	332	Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm	99.1
3ab4_A	421	Aspartokinase; aspartate kinase, concerted inhibit	99.1
4go7_X	200	Aspartokinase; transferase; 2.00A {Mycobacterium t	98.89
2dt9_A	167	Aspartokinase; protein-ligand complex, regulatory	98.89
3s1t_A	181	Aspartokinase; ACT domain, threonine binding, regu	98.85
3mah_A	157	Aspartokinase; aspartate kinase, structural genomi	98.78
2re1_A	167	Aspartokinase, alpha and beta subunits; structural	98.72
2dtj_A	178	Aspartokinase; protein-ligand complex, regulatory	98.49
2cdq_A	510	Aspartokinase; aspartate kinase, amino acid metabo	98.12
2f06_A	144	Conserved hypothetical protein; structural genomic	98.0
2j0w_A	449	Lysine-sensitive aspartokinase 3; feedback inhibit	97.82
3tvi_A	446	Aspartokinase; structural genomics, ACT domains, r	97.02
2f06_A	144	Conserved hypothetical protein; structural genomic	95.83
1zhv_A	134	Hypothetical protein ATU0741; NESG, ATR8, structur	94.68
1zvp_A	133	Hypothetical protein VC0802; structural genomics,	92.73
2nyi_A	195	Unknown protein; protein structure initiative, PSI	92.21
1zpv_A	91	ACT domain protein; structural genomics, PSI, prot	88.59
1u8s_A	192	Glycine cleavage system transcriptional repressor,	85.23
2pc6_A	165	Probable acetolactate synthase isozyme III (small;	85.2
3kbq_A	172	Protein TA0487; structural genomics, CINA, protein	85.14
2f1f_A	164	Acetolactate synthase isozyme III small subunit; f	85.05
2ko1_A	88	CTR148A, GTP pyrophosphokinase; homodimer, alpha+b	82.16
2fgc_A	193	Acetolactate synthase, small subunit; regulatory s	81.85

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=100.00  E-value=5.6e-54  Score=424.32  Aligned_cols=263  Identities=31%  Similarity=0.450  Sum_probs=228.5

Q ss_pred             cccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecC
Q 020132           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (330)
Q Consensus        34 ~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (330)
                      +..|+++|+||+||+++|+.+|     ++.++++++++++++   + ...+.+.+.+.++++++  .+.|||++||+|.+
T Consensus       107 ~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~---~-~~~~~~~~~~~l~~~l~--~~~v~Vv~Gf~g~~  175 (446)
T 3tvi_A          107 ASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDK---S-GCFDEKKSYEKIKEKVL--SCNKAVIPGFYGSS  175 (446)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC------CBCHHHHHHHHHHHTT--TCSSEECCCSEEEC
T ss_pred             ccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCC---C-CceehHhhHHHHHHHHh--cCCeEEeeCceecC
Confidence            6789999999999999999996     588999999987765   2 23456667789999997  78999999999999


Q ss_pred             CCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceee
Q 020132          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVM  193 (330)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~  193 (330)
                      ++|.++|+||||||++|+++|.+|+|+++++||||||||++||+++|+|+++++++|+|+.+|+++|+++|||+|+++|+
T Consensus       176 ~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~  255 (446)
T 3tvi_A          176 FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVK  255 (446)
T ss_dssp             TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHH
T ss_pred             CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecccceEEeeeccccCceeEeeCCCCC--C--------------------Cccc--------------------------
Q 020132          194 RYDIPIVIRNIFNLSVPGIMICRPPVD--E--------------------NEDE--------------------------  225 (330)
Q Consensus       194 ~~~i~v~i~~~~~~~~~GT~I~~~~~~--~--------------------~~~~--------------------------  225 (330)
                      ++|||++|+|+++|+.+||+|.+....  .                    ..|.                          
T Consensus       256 ~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~  335 (446)
T 3tvi_A          256 DSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSG  335 (446)
T ss_dssp             HSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEE
T ss_pred             HcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecC
Confidence            999999999999999999999754210  0                    0000                          


Q ss_pred             ----------cccc-------------CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcc
Q 020132          226 ----------QIID-------------SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEH  282 (330)
Q Consensus       226 ----------~~~~-------------~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~  282 (330)
                                ....             -....+.+.+++|+|++||.||+++||+++|+|++|+++||||.||+|++|++
T Consensus       336 ~~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei  415 (446)
T 3tvi_A          336 VDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEI  415 (446)
T ss_dssp             TTEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTT
T ss_pred             CCEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCc
Confidence                      0000             01234777899999999999999999999999999999999999999999999


Q ss_pred             eeeeecchhhHHHHHHHHHHHHHHH
Q 020132          283 SVCFAVPEKEVKAVAEALESKFREA  307 (330)
Q Consensus       283 sIS~vv~~~d~~~av~~Lh~~f~~~  307 (330)
                      +|||+|+++|.++|+++||+.||+.
T Consensus       416 ~Is~vV~~~d~~~Av~aLH~~ff~~  440 (446)
T 3tvi_A          416 NVIVGVETVDFEKAVKSIYNAFNEG  440 (446)
T ss_dssp             EEEEEEEGGGHHHHHHHHHHHHC--
T ss_pred             eEEEEEcHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999999864

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=100.00  E-value=1.4e-54  Score=434.95  Aligned_cols=288  Identities=28%  Similarity=0.420  Sum_probs=246.5

Q ss_pred             HHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCc---hh
Q 020132           16 IRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF---SE   87 (330)
Q Consensus        16 i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~---~~   87 (330)
                      +...++.|++++.     .+.+++.+|.++|+||++|+.+++.+|+++|++|+++++.++.+++++.+++.+++.   ..
T Consensus       115 i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~  194 (510)
T 2cdq_A          115 ILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPA  194 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHH
T ss_pred             HHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHHHH
Confidence            4444555555432     466789999999999999999999999999999999999998445656666655442   22


Q ss_pred             hHHHHHH-hhccCCCccEEEeeeeecCC-CCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhh
Q 020132           88 SEKRLEK-WFSQSPSNTIIATGFIASTP-DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (330)
Q Consensus        88 ~~~~i~~-~l~~~~~~VpVv~G~i~~~~-~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i  165 (330)
                      ..+.+.+ +++  .+.|||++||+|.++ +|.++|+||||||++|+++|.+|+|+.+++||||||||++||+.+|+|+++
T Consensus       195 ~~~~l~~~Ll~--~g~IpVv~Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~I  272 (510)
T 2cdq_A          195 VAKRLYDDWMH--DPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPV  272 (510)
T ss_dssp             HHHHHHHHHHH--SCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBC
T ss_pred             HHHHHHHHHHh--CCcEEEEeCccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEEe
Confidence            3455554 556  689999999999998 999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeCCCC-CC-------------------Ccc-
Q 020132          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPPV-DE-------------------NED-  224 (330)
Q Consensus       166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~-~~-------------------~~~-  224 (330)
                      ++++|+|+.+|+++|+++|||+|+++|.++|||++|+|+++|+.+||+|.+... +.                   ..| 
T Consensus       273 ~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~~~~~~~~~v~gIa~~~~~~~I~i~~~~m~  352 (510)
T 2cdq_A          273 PYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRML  352 (510)
T ss_dssp             CEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCCCTTCCEEEEEEEEEEEEEEEECGGGT
T ss_pred             cEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEeccccccccccccccccCCeEEEEEEcCCCC
Confidence            999999999999999999999999999999999999999999999999986421 00                   000 


Q ss_pred             ---------------------------------cc--c-c---------------cCCcccceeecceeEEeeecccccC
Q 020132          225 ---------------------------------EQ--I-I---------------DSPVKGFATIDNLALVNVEGTGMAG  253 (330)
Q Consensus       225 ---------------------------------~~--~-~---------------~~~~~~i~~~~nia~IsvvG~~~~~  253 (330)
                                                       ..  . .               -+.+..+.+.+|+|+|++||. |+.
T Consensus       353 ~~~g~~~~if~~la~~~I~vd~I~sse~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~-m~~  431 (510)
T 2cdq_A          353 GQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN-VQH  431 (510)
T ss_dssp             TCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEEC-GGG
T ss_pred             CcccHHHHHHHHHHHcCCcEEEEEeCCCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEE-CCC
Confidence                                             00  0 0               011346778899999999999 999


Q ss_pred             CCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          254 VPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       254 ~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      +||+++|+|++|+++||||.||+||+|+++|||+|+++|.++|+++||+.|+.
T Consensus       432 ~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH~~f~~  484 (510)
T 2cdq_A          432 SSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFE  484 (510)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHHS
T ss_pred             ChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999985

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=100.00  E-value=1.2e-52  Score=415.86  Aligned_cols=268  Identities=32%  Similarity=0.587  Sum_probs=234.5

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHH----HHHHhhccCCCccEEEe
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK----RLEKWFSQSPSNTIIAT  107 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~----~i~~~l~~~~~~VpVv~  107 (330)
                      +++.+|.++|+||.+|+.+++.+|+++|++|+++++.++ +.+++.+++.+++...+.+    .++.+++   +.|||++
T Consensus       107 ~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~~~~~~~~~~~~~~~~~~l~~l~~---~~IpVv~  182 (449)
T 2j0w_A          107 SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPRLN---EGLVITQ  182 (449)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTTSCCBCHHHHHHHHHHHTHHHHH---HSEEEEE
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCCCCccccHhHhHHHHHHHHHHHhc---CCEEEEe
Confidence            478899999999999999999999999999999999999 4566777776676544333    3344443   4599999


Q ss_pred             eeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhccccccccc
Q 020132          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (330)
Q Consensus       108 G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~  187 (330)
                      ||+|.+++|.++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+++++|+++|||+
T Consensus       183 Gf~g~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~  262 (449)
T 2j0w_A          183 GFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPA  262 (449)
T ss_dssp             SSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTT
T ss_pred             CCeeeCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHhcCCccchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeecccceEEeeeccccCceeEeeCCCCCC-------------------Ccc------------------------
Q 020132          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPPVDE-------------------NED------------------------  224 (330)
Q Consensus       188 a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~-------------------~~~------------------------  224 (330)
                      |+++|.++|||++|+|+++|+.+||+|.+...+.                   ..|                        
T Consensus       263 a~~~a~~~gi~v~I~~~~~p~~~GT~I~~~~~~~~~v~gIa~~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i  342 (449)
T 2j0w_A          263 TLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLI  342 (449)
T ss_dssp             THHHHHHHTCCEEEEESSCTTSCCEEEESCCSSCCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEE
T ss_pred             HHHHHHHCCCeEEEEECCCCCCCeeEEecccccccccccceeeCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEE
Confidence            9999999999999999999999999998652100                   000                        


Q ss_pred             ----------cccc----c-------------CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEec
Q 020132          225 ----------EQII----D-------------SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (330)
Q Consensus       225 ----------~~~~----~-------------~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq  277 (330)
                                ....    .             +.+..+.+.+|+++|++||.+|+.+||+.+|+|++|++  |||.||+|
T Consensus       343 ~ss~~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsq  420 (449)
T 2j0w_A          343 TTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICY  420 (449)
T ss_dssp             EEETTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEE
T ss_pred             EeCCCeEEEEEeccccchhhHHHHHHHHHHHhccCCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEe
Confidence                      0000    0             00345778889999999999999999999999999976  99999999


Q ss_pred             cCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          278 ASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       278 ~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ++|+++|||+|+++|.++|+++||+.|+
T Consensus       421 g~Se~~Is~vV~~~d~~~Av~~lh~~f~  448 (449)
T 2j0w_A          421 GASSHNLCFLVPGEDAEQVVQKLHSNLF  448 (449)
T ss_dssp             SSCTTEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEEeHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999997

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=100.00  E-value=1.3e-48  Score=399.25  Aligned_cols=270  Identities=29%  Similarity=0.443  Sum_probs=228.8

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      +++..|.++++||++|+.+++.+|+++|++|+++++.++.+++++.+++.++..... +.++++++  .+.|||++||+|
T Consensus        62 ~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~~~~~~-~~i~~ll~--~g~IpVv~Gf~g  138 (600)
T 3l76_A           62 CRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRP-DRLEHHLR--EGKVVVVAGFQG  138 (600)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------CCEEEE-CCHHHHHT--TTCEEEEECEEE
T ss_pred             CHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCceeccccH-HHHHHHHh--CCCEEEEECCee
Confidence            456788999999999999999999999999999999998777776666544433211 56788887  789999999999


Q ss_pred             cCCCC--CcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhccccccccccc
Q 020132          112 STPDN--IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTI  189 (330)
Q Consensus       112 ~~~~g--~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~  189 (330)
                      .+++|  .+++|||||||++|+.+|.+|+|+++++||||||||++||+++|+|+++++++|+|+.+|+++|+++|||+|+
T Consensus       139 ~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~  218 (600)
T 3l76_A          139 ISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAV  218 (600)
T ss_dssp             C----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHH
T ss_pred             cCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHH
Confidence            99999  9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeecccceEEeeeccccCceeEeeCCCC---------CCC-----------------cc-------------------
Q 020132          190 IPVMRYDIPIVIRNIFNLSVPGIMICRPPV---------DEN-----------------ED-------------------  224 (330)
Q Consensus       190 ~~a~~~~i~v~i~~~~~~~~~GT~I~~~~~---------~~~-----------------~~-------------------  224 (330)
                      ++|+++|||++|+|++++ .+||+|.+...         ...                 .+                   
T Consensus       219 ~~a~~~gipv~I~n~~~~-~~GT~I~~~~~~~~~~~~~~~~~~v~gi~~~~~~~~i~i~~~~~~~g~~~~if~~La~~~I  297 (600)
T 3l76_A          219 EIARNYGIPLVVRSSWSD-EPGTKVVAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALLRVPDRPGVASKLFRDIAQQQV  297 (600)
T ss_dssp             HHHHHHTCCEEEEETTCC-SCCEEEECCCCCSCCCCCCBSSCSCCEEEEECCCEEEEEEEEECSTTHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCeEEEEECCCC-CCCeEEecCCccccccccccccCcceEEEeeCCEEEEEEeCCCCcccHHHHHHHHHHHcCC
Confidence            999999999999999984 68999975431         000                 00                   


Q ss_pred             -----cc---------------------------ccc---------CCcccceeecceeEEeeecccccCCCCchhhhhh
Q 020132          225 -----EQ---------------------------IID---------SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFG  263 (330)
Q Consensus       225 -----~~---------------------------~~~---------~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~  263 (330)
                           .+                           ...         ..+..+.+.+++++|++||.+|+++||+++++|+
T Consensus       298 ~Vd~I~qs~~~~~~~~Isftv~~~~~~~a~~~l~~~~~el~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~  377 (600)
T 3l76_A          298 DIDLIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEIIVEKGIAKIAIAGAGMIGRPGIAAKMFK  377 (600)
T ss_dssp             CCCCEEBCCCBTTEEEEEEEECGGGHHHHHHHHHHHGGGGSSSTTCSSSSEEEEECSEEEEEEECGGGTTCTTHHHHHHH
T ss_pred             CEEEEEeeccCCCCceEEEEEeHHHHHHHHHHHHHHHHHhhccccccCcceeEecCCeEEEEEECCCcccCccHHHHHHH
Confidence                 00                           000         0345677889999999999999999999999999


Q ss_pred             hhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHH
Q 020132          264 AVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (330)
Q Consensus       264 ~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~  307 (330)
                      +|++++|||.||+  +|+++|||+|+++|.++|+++||+.|+.+
T Consensus       378 aL~~~~Ini~~is--tSe~~Is~vI~~~d~~~Av~aLh~~f~~~  419 (600)
T 3l76_A          378 TLADVGVNIEMIS--TSEVKVSCVIDQRDADRAIAALSNAFGVT  419 (600)
T ss_dssp             HHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTCC
T ss_pred             HHHhCCCcEEEEe--cCCCEEEEEEcHHHHHHHHHHHHHhhccc
Confidence            9999999999999  77999999999999999999999999764

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=100.00  E-value=7.6e-47  Score=372.16  Aligned_cols=268  Identities=26%  Similarity=0.381  Sum_probs=209.5

Q ss_pred             cccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           32 TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        32 ~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      +++..+.++++||.+++.+++.+|+++|++++++++.++.+.++..+++.++... ..+.++++++  .+.|||++||+|
T Consensus        62 ~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v~~~-~~~~i~~~l~--~g~ipVv~g~~g  138 (421)
T 3ab4_A           62 PAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDV-TPGRVREALD--EGKICIVAGFQG  138 (421)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------------C-CHHHHHHHHH--TTCEEEC-----
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeeechh-hHHHHHHHHh--CCCEEEEeCCcC
Confidence            4567888999999999999999999999999999999986666555554333321 2278888888  789999999999


Q ss_pred             cCCC-CCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccc
Q 020132          112 STPD-NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTII  190 (330)
Q Consensus       112 ~~~~-g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~  190 (330)
                      .+++ |.++++||||||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++|+|+.+|+++|++++||+|++
T Consensus       139 ~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~  218 (421)
T 3ab4_A          139 VNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVE  218 (421)
T ss_dssp             -------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHH
T ss_pred             cCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHH
Confidence            9999 999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeecccceEEeeeccccCceeEeeCCCCCCCcccccccCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCc
Q 020132          191 PVMRYDIPIVIRNIFNLSVPGIMICRPPVDENEDEQIIDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGA  270 (330)
Q Consensus       191 ~a~~~~i~v~i~~~~~~~~~GT~I~~~~~~~~~~~~~~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI  270 (330)
                      +|.++|||++|+|+++| .+||+|.+...+.  +  .....+++++.++|+++|++.|  |.+.||+++++|+.|+++||
T Consensus       219 ~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~--~--~~~~~i~~i~~~~~~~~i~v~~--~~~~~g~~~~If~~La~~~I  291 (421)
T 3ab4_A          219 YARAFNVPLRVRSSYSN-DPGTLIAGSMEDI--P--VEEAVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEI  291 (421)
T ss_dssp             HHHHTTCCEEEEESSSC-CCCEEECSCGGGS--C--TTTCCCCEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTC
T ss_pred             HHHHcCCCEEEecCcCC-CCCeEEEecCccc--c--cccCccceEEeeCCEEEEEEec--cCCcccHHHHHHHHHHHcCC
Confidence            99999999999999998 6899997641100  0  0234689999999999999997  78889999999999999999


Q ss_pred             cEEEEeccCCc-----ceeeeecchhhHHHHHHHHHHHHHHHhcc
Q 020132          271 NVIMISQASSE-----HSVCFAVPEKEVKAVAEALESKFREALNA  310 (330)
Q Consensus       271 ~I~~Isq~~se-----~sIS~vv~~~d~~~av~~Lh~~f~~~~~~  310 (330)
                      +|+||+|++|+     .+|+|+|++++.+++.+.|++ +..+++.
T Consensus       292 ~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~-~~~~~~~  335 (421)
T 3ab4_A          292 NIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKK-LQVQGNW  335 (421)
T ss_dssp             CCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHH-HHTTTTC
T ss_pred             cEEEEEccCccccCCcceEEEEEechhHHHHHHHHHH-HHHHcCC
Confidence            99999997774     789999999999999988877 5556654

>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}

Probab=99.87  E-value=9e-23  Score=187.88  Aligned_cols=149  Identities=17%  Similarity=0.274  Sum_probs=122.7

Q ss_pred             hhHHHHHHHHHHh-cCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccc
Q 020132           45 LWSAQMLAAVVRK-NGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKR  123 (330)
Q Consensus        45 ~~sa~~~~~~L~~-~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgr  123 (330)
                      .+++.+++..|.+ .|+++.++++.++...++      ..+.    ..+..+++  .|.|||++|  + ++++.++    
T Consensus        88 ~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~------~~~~----~~~~~lL~--~g~IpVi~g--g-~g~~~vt----  148 (255)
T 2jjx_A           88 IINSLMLRGVLTSKTNKEVRVMTSIPFNAVAE------PYIR----LRAVHHLD--NGYIVIFGG--G-NGQPFVT----  148 (255)
T ss_dssp             HHHHHHHHHHHHHHCSSCEEEEESSCCCSSSE------ECCH----HHHHHHHH--TTCEEEEES--T-TSCSSCC----
T ss_pred             HHHHHHHHHHHHhhcCCceEEecHHHcCcccC------cccH----HHHHHHHh--CCcEEEEeC--C-CCCCccc----
Confidence            5677778999999 999999998887642221      1122    33447787  789999998  3 3333322    


Q ss_pred             cCcchhHHHHHHHHhhceeEEEe-ecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecccceEEe
Q 020132          124 DGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIR  202 (330)
Q Consensus       124 ggsD~~A~~lA~~l~A~~l~~~t-dv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~  202 (330)
                        +|++|+.+|.+|+|+++++|| ||||||++||+++|+++++++++++|+.++   |.++|+|.|+++|.++|+|++|.
T Consensus       149 --tD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v~I~  223 (255)
T 2jjx_A          149 --TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAHVF  223 (255)
T ss_dssp             --SHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEE
T ss_pred             --hHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeEEEE
Confidence              499999999999999999999 999999999999999999999999988775   88999999999999999999999


Q ss_pred             eecccc---------CceeEeeCC
Q 020132          203 NIFNLS---------VPGIMICRP  217 (330)
Q Consensus       203 ~~~~~~---------~~GT~I~~~  217 (330)
                      |+++|+         ..||.|.++
T Consensus       224 ~~~~~~~l~~~l~g~~~GT~I~~~  247 (255)
T 2jjx_A          224 NFDEPGVMRRICLGEHVGTLINDD  247 (255)
T ss_dssp             ETTSTTHHHHHHBTCCCSEEEESS
T ss_pred             eCCCchHHHHHhcCCCCceEEecC
Confidence            998763         579999874

>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3

Probab=99.87  E-value=4.6e-23  Score=187.66  Aligned_cols=156  Identities=20%  Similarity=0.261  Sum_probs=125.8

Q ss_pred             ceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCC
Q 020132           37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN  116 (330)
Q Consensus        37 ~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g  116 (330)
                      +.+.+.|+.++++++...|.+.|+++.++++.+...+.+        ++.. .+.+ ++++  .|.|||++|+.     |
T Consensus        75 ~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~--------~~~~-~~~~-~ll~--~g~ipVv~g~~-----g  137 (239)
T 1ybd_A           75 DYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAE--------TYAR-PKAI-QYLE--EGKVVIFAAGT-----G  137 (239)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCE--------ECCH-HHHH-HHHH--TTCEEEEESTT-----S
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeccccccc--------chhH-HHHH-HHHh--CCcEEEEECCc-----c
Confidence            345566778888889999999999999988766422111        1111 1334 6777  78999998752     2


Q ss_pred             CcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecc
Q 020132          117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYD  196 (330)
Q Consensus       117 ~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~  196 (330)
                      .    .++++|++|+.+|.+|+|++++|||||||||++||+.+|+++++++++++|+.++   |.++|||+|+.+|.++|
T Consensus       138 ~----~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~g  210 (239)
T 1ybd_A          138 N----PFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALCRERK  210 (239)
T ss_dssp             S----TTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHTT
T ss_pred             C----CCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHHHHcC
Confidence            2    1357899999999999999999999999999999999999999999999998775   78999999999999999


Q ss_pred             cceEEeeecccc---------CceeEeeC
Q 020132          197 IPIVIRNIFNLS---------VPGIMICR  216 (330)
Q Consensus       197 i~v~i~~~~~~~---------~~GT~I~~  216 (330)
                      +|++|.|+++|+         ..||.|.+
T Consensus       211 v~v~I~~~~~~~~l~~~l~g~~~GT~i~~  239 (239)
T 1ybd_A          211 LNIVVFGIAKEGSLKRVITGEDEGTLVHC  239 (239)
T ss_dssp             CCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred             CcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence            999999987652         45888853

>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*

Probab=99.87  E-value=7.6e-23  Score=184.91  Aligned_cols=148  Identities=18%  Similarity=0.226  Sum_probs=122.9

Q ss_pred             cccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecC
Q 020132           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (330)
Q Consensus        34 ~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (330)
                      ...+.+.+.|+.+++.+++..|++.|+++           +       .++.    ++++++++  .+.|||++|  + .
T Consensus        62 ~~~~~~~~~~~~~~~~l~~~~l~~~g~~~-----------~-------~~~~----~~i~~ll~--~g~ipVi~g--g-~  114 (226)
T 2j4j_A           62 AYLDLLGIWASRLNAYLVMFSLQDLAYMH-----------V-------PQSL----EEFIQDWS--HGKVVVTGG--F-Q  114 (226)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTSBCSC-----------C-------CSSH----HHHHHHHT--TSSBEEECC--C-S
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhCCCC-----------C-------cCCH----HHHHHHHH--CCCEEEEcC--C-C
Confidence            45667788899999999999999999965           1       1334    77888887  889999998  2 1


Q ss_pred             CCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhc-ccc------cccc
Q 020132          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GAN------VLHP  186 (330)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~-g~~------v~~p  186 (330)
                           .   ++++|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.+++.. |..      ++|+
T Consensus       115 -----~---~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~  186 (226)
T 2j4j_A          115 -----P---GQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDP  186 (226)
T ss_dssp             -----T---TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCSCH
T ss_pred             -----C---CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchH
Confidence                 1   356899999999999999999999999999999999999999999999999999644 554      7788


Q ss_pred             cccceeeecccceEEeeecccc---------CceeEeeC
Q 020132          187 RTIIPVMRYDIPIVIRNIFNLS---------VPGIMICR  216 (330)
Q Consensus       187 ~a~~~a~~~~i~v~i~~~~~~~---------~~GT~I~~  216 (330)
                      +|+.+|.++|+|++|.|+++|+         ..||.|.+
T Consensus       187 ~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~  225 (226)
T 2j4j_A          187 LAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP  225 (226)
T ss_dssp             HHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred             HHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence            9999999999999999987653         45898864

>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*

Probab=99.86  E-value=6.8e-23  Score=187.76  Aligned_cols=157  Identities=20%  Similarity=0.221  Sum_probs=121.2

Q ss_pred             cceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCC
Q 020132           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (330)
Q Consensus        36 ~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (330)
                      .|.+.+.|++++++++...|.+.|+++.++++.+...+++          ......++++++  .|.|||++|+     .
T Consensus        75 ~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~~~----------~~~~~~~~~ll~--~g~ipVi~~~-----~  137 (247)
T 2a1f_A           75 GDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICD----------TYNWSEAIKMLR--EKRVVIFSAG-----T  137 (247)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSE----------ECCHHHHHHHHH--TTCEEEEEST-----T
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCeEEecccccccccc----------hhhHHHHHHHHh--CCCEEEEeCC-----c
Confidence            3455667788889989999999999999998876421111          012234577887  7899999983     2


Q ss_pred             CCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeec
Q 020132          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRY  195 (330)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~  195 (330)
                      |.    .++++|++|+.+|.+|+|++++|||||||||++||+.+|+++++++++++|+.++   |.++|+|+|+.+|.++
T Consensus       138 g~----~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~  210 (247)
T 2a1f_A          138 GN----PFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDH  210 (247)
T ss_dssp             SC----SSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHH
T ss_pred             CC----CCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHc
Confidence            32    2357899999999999999999999999999999999999999999999999875   7899999999999999


Q ss_pred             ccceEEeeeccc---------cCceeEeeC
Q 020132          196 DIPIVIRNIFNL---------SVPGIMICR  216 (330)
Q Consensus       196 ~i~v~i~~~~~~---------~~~GT~I~~  216 (330)
                      |+|++|.|+++|         +..||+|..
T Consensus       211 gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~  240 (247)
T 2a1f_A          211 GMPIRVFNMGKPGALRQVVTGTEEGTTICE  240 (247)
T ss_dssp             TCCEEEEETTSTTHHHHHHTCSCSSEEECC
T ss_pred             CCcEEEEeCCCchHHHHHHcCCCCceEEee
Confidence            999999998654         346888853

>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*

Probab=99.86  E-value=2.1e-22  Score=183.98  Aligned_cols=147  Identities=21%  Similarity=0.267  Sum_probs=122.4

Q ss_pred             chhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccc
Q 020132           44 ELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKR  123 (330)
Q Consensus        44 E~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgr  123 (330)
                      ..+++.+++..|+++|++++.+++.++...+.      ..+.    +.+.++++  .+.|||++|+.     |..    .
T Consensus        83 ~~~n~~l~~~~l~~~G~~av~lt~~d~~~~~~------~~~~----~~i~~lL~--~g~ipVi~~~~-----g~~----~  141 (240)
T 4a7w_A           83 TVINAVAMQEALEHIGLDTRVQSAIEIKEICE------SYIY----RKAIRHLE--KGRVVIFGAGT-----GNP----F  141 (240)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEESSCCTTTSE------ECCH----HHHHHHHH--TTCEEEEESTT-----SCT----T
T ss_pred             HHHHHHHHHHHHHHCCCCEEEecHHHcCcccC------cCcH----HHHHHHHH--CCCEEEEeCCC-----CCC----C
Confidence            56788888899999999999998877632110      1233    66788888  88999999842     322    1


Q ss_pred             cCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecccceEEee
Q 020132          124 DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRN  203 (330)
Q Consensus       124 ggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~  203 (330)
                      +.+|++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++   |.++|+++|+.+|.++|+|++|.|
T Consensus       142 ~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~  218 (240)
T 4a7w_A          142 FTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVVCN  218 (240)
T ss_dssp             SCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEEEE
T ss_pred             CChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEEEC
Confidence            35799999999999999999999999999999999999999999999998764   789999999999999999999999


Q ss_pred             ecccc----------CceeEe
Q 020132          204 IFNLS----------VPGIMI  214 (330)
Q Consensus       204 ~~~~~----------~~GT~I  214 (330)
                      ++.|+          ..||.|
T Consensus       219 g~~~~~l~~~l~g~~g~GT~i  239 (240)
T 4a7w_A          219 MFKKGNLLQVIKHQQGVFSMV  239 (240)
T ss_dssp             SSSTTHHHHHHHHSCSSCEEE
T ss_pred             CCCccHHHHHHCCCCCCceee
Confidence            97653          357876

>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A

Probab=99.85  E-value=5.6e-22  Score=181.46  Aligned_cols=148  Identities=23%  Similarity=0.254  Sum_probs=122.4

Q ss_pred             hhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCccccccc
Q 020132           45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD  124 (330)
Q Consensus        45 ~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrg  124 (330)
                      ++++.++...|.+.|++++.+++.++...++      .+    ..+.+..+++  .|.|||++|+     .|..    ++
T Consensus        85 ~~N~~~l~~al~~~G~~a~~~~~~~~~~v~~------~~----~~~~~~~lL~--~g~IpVv~~~-----~g~~----~~  143 (243)
T 3ek6_A           85 VINALAMQDALEKLGAKVRVMSAIKINDVCE------DF----IRRRAIRHLE--KGRIAIFAAG-----TGNP----FF  143 (243)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEESSCBTTTBE------EC----CHHHHHHHHH--TTCEEEEEST-----TSST----TC
T ss_pred             HHHHHHHHHHHHHcCCCeEEechhhcCcccC------cC----CHHHHHHHHH--CCcEEEEECC-----CCCC----cC
Confidence            3446679999999999999999887532111      12    2367788888  8999999984     2322    25


Q ss_pred             CcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecccceEEeee
Q 020132          125 GSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNI  204 (330)
Q Consensus       125 gsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~  204 (330)
                      ++|++|+.+|.+|+|+++++||||||||++||+.+|+|+++++++++|+.+   .|.++|+++|++.|.++|+|++|.|+
T Consensus       144 ~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~---~g~~~~~~~a~~~a~~~gv~v~I~~g  220 (243)
T 3ek6_A          144 TTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIM---QGLEVMDTAAFALARDSDLPLRIFGM  220 (243)
T ss_dssp             CHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHH---HTCCSSCHHHHHHHHHTTCCEEEECC
T ss_pred             ChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHh---CCchhHHHHHHHHHHHCCCeEEEEcC
Confidence            689999999999999999999999999999999999999999999998876   37889999999999999999999999


Q ss_pred             ccc---------cCceeEeeC
Q 020132          205 FNL---------SVPGIMICR  216 (330)
Q Consensus       205 ~~~---------~~~GT~I~~  216 (330)
                      ++|         +..||+|.+
T Consensus       221 ~~~~~l~~~l~g~~~GT~i~~  241 (243)
T 3ek6_A          221 SEPGVLLRILHGAQIGTLVQG  241 (243)
T ss_dssp             CSTTHHHHHHTTCCCSEEECC
T ss_pred             CCccHHHHHHCCCCCceEEee
Confidence            754         346999875

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A

Probab=99.85  E-value=6.6e-22  Score=191.02  Aligned_cols=168  Identities=16%  Similarity=0.229  Sum_probs=102.2

Q ss_pred             cceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCC
Q 020132           36 TDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (330)
Q Consensus        36 ~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (330)
                      .+.+.+.|+..+++.+...|.+.|+++.     ++.+ +.+.+.. +..+....+.++++++  .|.|||+.+.      
T Consensus        72 ~qa~aavGq~~l~~~~~~~l~~~G~~~~-----qvll-t~~d~~~-~~r~~n~~~~i~~LL~--~g~IPIv~en------  136 (367)
T 2j5v_A           72 KQLLAAVGQSRLIQLWEQLFSIYGIHVG-----QMLL-TRADMED-RERFLNARDTLRALLD--NNVVPVINEN------  136 (367)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTTCCEE-----EEEE-CGGGGSS-HHHHHHHHHHHHHHHH--TTCEEEEEEC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCceE-----EEEE-ecccccC-ceEEEhHHHHHHHHHH--CCCEEEECCC------
Confidence            3345678898899999999999999885     3433 3332321 1122233477888888  7999999642      


Q ss_pred             CCccc--ccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh--HHhhhhhh-----cccccccc
Q 020132          116 NIPTT--LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHP  186 (330)
Q Consensus       116 g~~~~--lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~~p  186 (330)
                      +.+.+  +.+|++|++|+.+|.+++|+.++|||||||||++||+.+|++++++++++  +|+.+++.     +|.++|+|
T Consensus       137 d~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~  216 (367)
T 2j5v_A          137 DAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMST  216 (367)
T ss_dssp             TTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC------------------------------------------CHH
T ss_pred             CceecccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHH
Confidence            23333  66889999999999999999999999999999999999999999999999  89998875     47789999


Q ss_pred             --cccceeeecccceEEeeecccc---------CceeEeeCCC
Q 020132          187 --RTIIPVMRYDIPIVIRNIFNLS---------VPGIMICRPP  218 (330)
Q Consensus       187 --~a~~~a~~~~i~v~i~~~~~~~---------~~GT~I~~~~  218 (330)
                        .|+..|.++|+|++|.|+++|+         ..||+|.+..
T Consensus       217 Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~~  259 (367)
T 2j5v_A          217 KLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQA  259 (367)
T ss_dssp             HHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCCS
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcCc
Confidence              6899999999999999998764         6799997653

>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.84  E-value=7.5e-22  Score=183.18  Aligned_cols=155  Identities=16%  Similarity=0.169  Sum_probs=119.5

Q ss_pred             HHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCC--CCcccccccCcc
Q 020132           50 MLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD--NIPTTLKRDGSD  127 (330)
Q Consensus        50 ~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~--g~~~~lgrggsD  127 (330)
                      .+++.|+++|++|+.+++.+..+++.++.  ..++.    +.++.+++  .+.|||++||++.+.+  |+++++   ++|
T Consensus        93 ~l~~~L~~~G~~a~~l~g~~~~~~~~g~v--~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~~~g~~~~~---~~D  161 (269)
T 3ll9_A           93 HVCDALLAEGIPAVSMQPSAFIRAHAGRI--SHADI----SLIRSYLE--EGMVPVVYGDVVLDSDRRLKFSVI---SGD  161 (269)
T ss_dssp             HHHHHHHHTTCCEEECCGGGTEEEETTEE--EEECC----HHHHHHHH--TTCEEEEECEEEEBSCTTTSEEEE---CHH
T ss_pred             HHHHHHHHCCCcEEEEcchHcCeEecCee--eeecH----HHHHHHHH--CCCEEEECCCEEecccccCcceec---chH
Confidence            47889999999999999998876654321  23455    88899998  8999999999998888  888776   589


Q ss_pred             hhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh-----ccccccccc--ccceeeecccceE
Q 020132          128 FSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY-----FGANVLHPR--TIIPVMRYDIPIV  200 (330)
Q Consensus       128 ~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~-----~g~~v~~p~--a~~~a~~~~i~v~  200 (330)
                      ++|+.+|.+|+|+++++||||||||++||+.+|++++++++++.|+.++..     .+..+|.|+  ++..|.++|++++
T Consensus       162 ~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v~  241 (269)
T 3ll9_A          162 QLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVESE  241 (269)
T ss_dssp             HHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHHTTCCEE
T ss_pred             HHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCeEE
Confidence            999999999999999999999999999999999999999999999977753     345788884  5666667899999


Q ss_pred             Eeeeccc---------cCc-eeEee
Q 020132          201 IRNIFNL---------SVP-GIMIC  215 (330)
Q Consensus       201 i~~~~~~---------~~~-GT~I~  215 (330)
                      |.|+..|         +.. ||.|.
T Consensus       242 I~~g~~~~~l~~~~~g~~~~GT~i~  266 (269)
T 3ll9_A          242 IINAAVPGNIERALLGEEVRGTRIT  266 (269)
T ss_dssp             EEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred             EEeCCCchHHHHHHCCCCCCcEEEE
Confidence            9998654         344 88875

>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2

Probab=99.84  E-value=3.6e-22  Score=187.91  Aligned_cols=168  Identities=14%  Similarity=0.198  Sum_probs=133.3

Q ss_pred             eeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCC-C---CCCc-------hhhHHHHHHhhccCCCccEEEe
Q 020132           39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQ-V---DPDF-------SESEKRLEKWFSQSPSNTIIAT  107 (330)
Q Consensus        39 v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~-~---~~~~-------~~~~~~i~~~l~~~~~~VpVv~  107 (330)
                      .++.|+. +. .+...|.+.|++++++++.+..+++....+- .   .+|+       ....+.++++++  .|.|||++
T Consensus       100 ~~~~G~l-~~-~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~--~g~IpVv~  175 (299)
T 2ap9_A          100 MVLFGQV-GR-ELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVA--AGRIPVVS  175 (299)
T ss_dssp             HHHHHTH-HH-HHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHH--TTCEEEEE
T ss_pred             HHHhhHH-HH-HHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHh--CCCeEEEC
Confidence            3446874 33 4799999999999999988742222111110 0   0110       012378888998  89999999


Q ss_pred             eeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhccccccccc
Q 020132          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (330)
Q Consensus       108 G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~  187 (330)
                      |+ +.++.|+.+++   ++|++|+.+|.+|+|++++|||||||||++||+   +++++++++++|+.+++.++.++|+|+
T Consensus       176 ~v-~~~~~G~~~~l---~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~K  248 (299)
T 2ap9_A          176 TL-APDADGVVHNI---NADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPK  248 (299)
T ss_dssp             SE-EECTTCCEEEE---CHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHH
T ss_pred             Ce-eECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHH
Confidence            98 88888988877   589999999999999999999999999999998   478999999999999998899999996


Q ss_pred             --ccceeeecccc-eEEeeecccc----------CceeEeeCC
Q 020132          188 --TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP  217 (330)
Q Consensus       188 --a~~~a~~~~i~-v~i~~~~~~~----------~~GT~I~~~  217 (330)
                        |+..|.++|+| ++|.|+..|+          ..||.|.+.
T Consensus       249 l~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~  291 (299)
T 2ap9_A          249 VEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG  291 (299)
T ss_dssp             HHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred             HHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence              88888899999 9999986553          358999764

>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3

Probab=99.84  E-value=7.7e-22  Score=181.29  Aligned_cols=154  Identities=21%  Similarity=0.252  Sum_probs=124.9

Q ss_pred             eccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCccc
Q 020132           41 GHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT  120 (330)
Q Consensus        41 ~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~  120 (330)
                      +.++.++++++...|.+.|++++.+.+.+...+.+     .   +  ....++++++  .|.|||++|+     .|.   
T Consensus        79 ~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~~~-----~---~--~~~~~~~lL~--~g~IpVi~~~-----~g~---  138 (252)
T 1z9d_A           79 MLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAE-----P---Y--IRGRALRHLE--KNRIVVFGAG-----IGS---  138 (252)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTTBE-----E---C--CHHHHHHHHH--TTCEEEEEST-----TSC---
T ss_pred             HHHHHHHHHHHHHHHHHcCCCeEEEeccccccccC-----c---c--hHHHHHHHHh--CCCEEEEeCC-----cCC---
Confidence            34556677779999999999999988765421111     0   1  2234477887  7899999983     132   


Q ss_pred             ccccCcchhHHHHHHHHhhceeEEEe-ecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecccce
Q 020132          121 LKRDGSDFSAAIMGALLRAHQVTIWT-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPI  199 (330)
Q Consensus       121 lgrggsD~~A~~lA~~l~A~~l~~~t-dv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v  199 (330)
                       .++++|++|+.+|.+|+|++++||| ||||||++||+.+|+++++++++++|+.+   .|.++|+++|+..|.++|+|+
T Consensus       139 -~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v  214 (252)
T 1z9d_A          139 -PYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDL  214 (252)
T ss_dssp             -TTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEE
T ss_pred             -CCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeE
Confidence             2467999999999999999999999 99999999999999999999999999876   477899999999999999999


Q ss_pred             EEeeecccc---------CceeEeeCCC
Q 020132          200 VIRNIFNLS---------VPGIMICRPP  218 (330)
Q Consensus       200 ~i~~~~~~~---------~~GT~I~~~~  218 (330)
                      +|.|+.+|+         ..||+|.+..
T Consensus       215 ~I~~g~~~~~l~~~l~g~~~GT~i~~~~  242 (252)
T 1z9d_A          215 VVFNMNEAGNIQRVVFGEHIGTTVSNKV  242 (252)
T ss_dssp             EEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred             EEEeCCCchHHHHHHcCCCCceEEecCC
Confidence            999997663         5799998754

>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.83  E-value=1.6e-21  Score=181.69  Aligned_cols=126  Identities=19%  Similarity=0.246  Sum_probs=105.1

Q ss_pred             hHHHHHHhhccCCCccEEEeeeeecCCCCCc-ccccccCcchhHHHHHHHHhhceeEEEeecccccccCcc--chhHhhh
Q 020132           88 SEKRLEKWFSQSPSNTIIATGFIASTPDNIP-TTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPR--KVSEAVI  164 (330)
Q Consensus        88 ~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~-~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~--~~~~a~~  164 (330)
                      ..+.++.+++  .|.|||++||.+.+.++.+ ..+.++++|++|+.+|.+|+|+++++||||||||++||+  .+|++++
T Consensus       133 ~~~~i~~lL~--~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~  210 (276)
T 2ogx_A          133 VADQLAIHLS--ATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARF  210 (276)
T ss_dssp             HHHHHHHHHH--HSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCE
T ss_pred             hHHHHHHHHh--CCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeE
Confidence            3477888888  7899999998776632210 112346799999999999999999999999999999999  8999999


Q ss_pred             hhhhhhHHhhhhhhcccccccccccceee--ecccceEEeeeccc---------cCceeEeeCC
Q 020132          165 LRTLSYQEAWEMSYFGANVLHPRTIIPVM--RYDIPIVIRNIFNL---------SVPGIMICRP  217 (330)
Q Consensus       165 i~~is~~e~~~l~~~g~~v~~p~a~~~a~--~~~i~v~i~~~~~~---------~~~GT~I~~~  217 (330)
                      +++++++|+.+++  |.++|+|++...+.  +++++++|.|+..|         +..||.|.+.
T Consensus       211 i~~i~~~e~~~~~--g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~  272 (276)
T 2ogx_A          211 LPETSATDLAKSE--GPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG  272 (276)
T ss_dssp             ESEEEHHHHHTSC--SCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred             cceeCHHHHHHHh--CcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence            9999999999987  88999999877777  56889999998766         4579999764

>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*

Probab=99.82  E-value=2.6e-21  Score=177.03  Aligned_cols=148  Identities=24%  Similarity=0.286  Sum_probs=120.6

Q ss_pred             cccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecC
Q 020132           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (330)
Q Consensus        34 ~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (330)
                      ...+.+.+.|+.+++.++...|.+.|+++            +      .++.    +.+.++++  .+.|||++|     
T Consensus        82 ~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------------~------~~~~----~~i~~lL~--~g~IpVi~g-----  132 (244)
T 2brx_A           82 TFKDFIGIQITRANAMLLIAALREKAYPV------------V------VEDF----WEAWKAVQ--LKKIPVMGG-----  132 (244)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHGGGBCSS------------C------BCSH----HHHHHHHH--TTCBCEECC-----
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHcCCCC------------C------cCCH----HHHHHHHh--CCCEEEEcC-----
Confidence            44556677788899999888999999754            0      1233    66788888  899999998     


Q ss_pred             CCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhc-cc-----cccccc
Q 020132          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLHPR  187 (330)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~-g~-----~v~~p~  187 (330)
                        |..    ++++|++|+.+|.+|+|++++|||||||||++||+++|+++++++++++|+.+++.. |.     .++++.
T Consensus       133 --g~~----~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~  206 (244)
T 2brx_A          133 --THP----GHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPL  206 (244)
T ss_dssp             --CST----TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHH
T ss_pred             --CCC----CCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHH
Confidence              222    246799999999999999999999999999999999999999999999999998643 43     678889


Q ss_pred             ccceeeecccceEEeeeccc---------cCceeEeeC
Q 020132          188 TIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (330)
Q Consensus       188 a~~~a~~~~i~v~i~~~~~~---------~~~GT~I~~  216 (330)
                      |++.+.+.+++++|.|+++|         +..||.|.+
T Consensus       207 A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~  244 (244)
T 2brx_A          207 AAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  244 (244)
T ss_dssp             HHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             HHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence            99999999999999998654         245888853

>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}

Probab=99.81  E-value=2.3e-20  Score=171.92  Aligned_cols=147  Identities=15%  Similarity=0.183  Sum_probs=109.9

Q ss_pred             hhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCccccccc
Q 020132           45 LWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRD  124 (330)
Q Consensus        45 ~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrg  124 (330)
                      .++++++...|.+.|++++.+.+.+.     +.+.+.     .....+..+++  .|.|||++|.     .|.    .++
T Consensus        99 ~~n~~l~~~~l~~~Gi~a~~~~~~t~-----~~~~~~-----~~~~~~~~lL~--~g~IpVi~~~-----~g~----~~~  157 (256)
T 2va1_A           99 IINGLALENALNHLNVNTIVLSAIKC-----DKLVHE-----SSANNIKKAIE--KEQVMIFVAG-----TGF----PYF  157 (256)
T ss_dssp             HHHHHHHHHHHHTTTCCEEEEESSCC-----TTTCEE-----CCHHHHHHHHH--TTCEEEEEST-----TSS----SSC
T ss_pred             HHHHHHHHHHHHHcCCCeEEEeeeec-----ccccch-----hhHHHHHHHHh--CCcEEEEECC-----CCC----CCC
Confidence            55566779999999999987765532     112111     12233467887  8999999982     232    246


Q ss_pred             CcchhHHHHHHHHhhceeEEEee-cccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecccceEEee
Q 020132          125 GSDFSAAIMGALLRAHQVTIWTD-VDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRN  203 (330)
Q Consensus       125 gsD~~A~~lA~~l~A~~l~~~td-v~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~  203 (330)
                      ++|++|+.+|.+|+|++++++|| |||||++||+++|+++++++++++|+.++   +.++|+++|+..|.++|+|++|.|
T Consensus       158 ~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~gv~v~I~~  234 (256)
T 2va1_A          158 TTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFN  234 (256)
T ss_dssp             CHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTTCEEEEEE
T ss_pred             ChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCCCeEEEEe
Confidence            78999999999999999999999 99999999999999999999999999887   457889999999999999999999


Q ss_pred             eccc---------cCceeEee
Q 020132          204 IFNL---------SVPGIMIC  215 (330)
Q Consensus       204 ~~~~---------~~~GT~I~  215 (330)
                      +.+|         +..||.|.
T Consensus       235 g~~~~~l~~~l~g~~~GT~i~  255 (256)
T 2va1_A          235 IDKPNAIVDVLEKKNKYTIVS  255 (256)
T ss_dssp             SSSTTHHHHHHTTCSCEEEEE
T ss_pred             CCCchHHHHHHcCCCCeEEEe
Confidence            8754         24588875

>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3

Probab=99.81  E-value=3.6e-21  Score=176.57  Aligned_cols=158  Identities=13%  Similarity=0.148  Sum_probs=117.5

Q ss_pred             ceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCC
Q 020132           37 DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDN  116 (330)
Q Consensus        37 ~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g  116 (330)
                      +.+.+.|+....+.+...|.+.|+++..     + ..+.+.+.. +..+....+.++.+++  .|.|||++|+-+.. .+
T Consensus        66 ~~l~~~~q~~l~~~~~~~l~~~G~~~~~-----i-~~~~~~~~~-~~~~~~~~~~i~~ll~--~g~ipVi~~~d~v~-~~  135 (251)
T 2ako_A           66 QVLAAIGQPFLISVYNELLAKFNKLGGQ-----I-LLTGKDFDS-RKATKHAKNAIDMMIN--LGILPIINENDATA-IE  135 (251)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGTCCEEE-----E-EECTGGGGC-HHHHHHHHHHHHHHHH--TTCEEEEEECTTTC-CH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCcEEE-----E-EeccchhcC-cceEehHHHHHHHHHH--CCCEEEEeCCCcee-ec
Confidence            3455667778888899999999998763     3 233322211 0111123367888888  89999999751111 11


Q ss_pred             CcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhH--Hhhhhhh-----cccccccc--c
Q 020132          117 IPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ--EAWEMSY-----FGANVLHP--R  187 (330)
Q Consensus       117 ~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~--e~~~l~~-----~g~~v~~p--~  187 (330)
                      +.   .++++|++|+.+|.+|+|+++++||||||||++||+++|++++++++++.  |+.+++.     +|.++|.|  +
T Consensus       136 ~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~  212 (251)
T 2ako_A          136 EI---VFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLK  212 (251)
T ss_dssp             HH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHH
T ss_pred             ce---eecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHH
Confidence            11   35789999999999999999999999999999999999999999999998  9999875     56787876  5


Q ss_pred             ccceeeecccceEEeeeccc
Q 020132          188 TIIPVMRYDIPIVIRNIFNL  207 (330)
Q Consensus       188 a~~~a~~~~i~v~i~~~~~~  207 (330)
                      |+..|.++|+|++|.|+.+|
T Consensus       213 aa~~a~~~gv~v~I~~g~~~  232 (251)
T 2ako_A          213 AAKFLLEHNKKMFLASGFDL  232 (251)
T ss_dssp             HHHHHHHTTCEEEEEESSSC
T ss_pred             HHHHHHHCCCeEEEEeCCCh
Confidence            88999999999999987654

>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*

Probab=99.80  E-value=4.5e-21  Score=179.42  Aligned_cols=155  Identities=13%  Similarity=0.040  Sum_probs=121.8

Q ss_pred             eeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCc
Q 020132           39 VVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIP  118 (330)
Q Consensus        39 v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~  118 (330)
                      .++.|+......+...|.++|+++..+.+.+..++.+   |...++.    +.++.+++  .|.|||++||++.+.+|++
T Consensus        94 ~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~d---g~~~~~~----~~i~~lL~--~g~IpVi~gd~~~~~~g~~  164 (286)
T 3d40_A           94 GLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRN---GIPQLRS----EVLRDVLD--HGALPVLAGDALFDEHGKL  164 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEET---TEEEECC----SHHHHHHH--TTCEEEEECEEEEBTTSCE
T ss_pred             cchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccC---CeEEehH----HHHHHHHH--CcCEEEEcCCeEEcCCCCE
Confidence            3455555567788999999999999998866553222   1122334    67888888  8999999998898888874


Q ss_pred             ccccccCcchhHHHHHHH-HhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh--------cccccccc--c
Q 020132          119 TTLKRDGSDFSAAIMGAL-LRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--------FGANVLHP--R  187 (330)
Q Consensus       119 ~~lgrggsD~~A~~lA~~-l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~--------~g~~v~~p--~  187 (330)
                         .++++|++|+.+|.+ |+|++++|+|||||||++||+   ++++++++++.|+.++..        ++.++|+|  +
T Consensus       165 ---~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~  238 (286)
T 3d40_A          165 ---WAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLD  238 (286)
T ss_dssp             ---EEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHH
T ss_pred             ---EeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHH
Confidence               456799999999999 999999999999999999999   799999999998777743        35689998  5


Q ss_pred             ccceeeecccceEEeeecccc
Q 020132          188 TIIPVMRYDIPIVIRNIFNLS  208 (330)
Q Consensus       188 a~~~a~~~~i~v~i~~~~~~~  208 (330)
                      |+..|.++|+|++|.|+..|+
T Consensus       239 Aa~~a~~~gv~v~I~~g~~p~  259 (286)
T 3d40_A          239 ALVTCARRGAECFIMRGDPGS  259 (286)
T ss_dssp             HHHHHHHTTCEEEEEECCTTC
T ss_pred             HHHHHHHCCCcEEEEeCCCCC
Confidence            888899999999999987654

>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}

Probab=99.80  E-value=1.2e-20  Score=175.92  Aligned_cols=154  Identities=21%  Similarity=0.256  Sum_probs=116.9

Q ss_pred             eeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCC
Q 020132           38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (330)
Q Consensus        38 ~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~  117 (330)
                      ++-..++.+++.++...|.+.|++++.+.+.+...+++ .|    .+    .+.+ ++|+  .|.|||+.|+     .|.
T Consensus       118 ~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~~-~~----~~----~~~l-~lL~--~g~IpVv~g~-----~g~  180 (281)
T 3nwy_A          118 YMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAE-PY----LP----LRAV-RHLE--KGRVVIFGAG-----MGL  180 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGGGSE-EC----CH----HHHH-HHHH--TTCEEEEEST-----TSS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCEEEEeccccccccc-cc----ch----HHHH-HHHH--cCCeEEEECC-----CCC
Confidence            33345678888899999999999997665554322221 11    11    1334 6777  8999999984     232


Q ss_pred             cccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeeccc
Q 020132          118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDI  197 (330)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i  197 (330)
                      .    ++++|++|+++|.+|+|+.+++||||||||++||+++|+|+++++++++|+.+   .|..+|+++|+..|.++|+
T Consensus       181 ~----~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi  253 (281)
T 3nwy_A          181 P----YFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGM  253 (281)
T ss_dssp             T----TCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTC
T ss_pred             C----CCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCC
Confidence            2    25689999999999999999999999999999999999999999999998754   4788999999999999999


Q ss_pred             ceEEeeeccc---------cCceeEee
Q 020132          198 PIVIRNIFNL---------SVPGIMIC  215 (330)
Q Consensus       198 ~v~i~~~~~~---------~~~GT~I~  215 (330)
                      |++|.|+++|         +..||+|.
T Consensus       254 ~v~I~~g~~p~~l~~~l~Ge~~GT~i~  280 (281)
T 3nwy_A          254 PILVFNLLTDGNIARAVRGEKIGTLVT  280 (281)
T ss_dssp             CEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred             eEEEecCCCchHHHHHHcCCCCceEEe
Confidence            9999998754         34688874

>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3

Probab=99.79  E-value=5.4e-20  Score=165.32  Aligned_cols=144  Identities=25%  Similarity=0.295  Sum_probs=111.8

Q ss_pred             cccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecC
Q 020132           34 SFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAST  113 (330)
Q Consensus        34 ~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~  113 (330)
                      ...+.+.+.++.+++.++...|+.. +             ..     ..++.    +.++++++  .|.|||++|     
T Consensus        60 ~~l~~~~~~~~~~~~~l~~~~~~~~-~-------------~~-----~~~~~----~~i~~ll~--~g~ipVi~~-----  109 (219)
T 2ij9_A           60 TFCDYIGIAATRLNAMLLISAIPSA-A-------------KK-----VPVDF----MEAEELSK--LYRVVVMGG-----  109 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTB-C-------------SS-----CCSSH----HHHHHHHT--TCSEEEECC-----
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHh-c-------------CC-----CcCCH----HHHHHHHH--CCCEEEEeC-----
Confidence            3344555556666666666655432 1             00     11344    77888898  899999998     


Q ss_pred             CCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhc-cc-----cccccc
Q 020132          114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYF-GA-----NVLHPR  187 (330)
Q Consensus       114 ~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~-g~-----~v~~p~  187 (330)
                        |..    ++++|++|+.+|.+|+|+++++||||||||++||+++|+++++++++++|+.+++.. |.     .++++.
T Consensus       110 --g~~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~  183 (219)
T 2ij9_A          110 --TFP----GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLL  183 (219)
T ss_dssp             --CSS----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHH
T ss_pred             --CCC----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHH
Confidence              222    246899999999999999999999999999999999999999999999999999765 44     678889


Q ss_pred             ccceeeecccceEEeeeccc---------cCceeEe
Q 020132          188 TIIPVMRYDIPIVIRNIFNL---------SVPGIMI  214 (330)
Q Consensus       188 a~~~a~~~~i~v~i~~~~~~---------~~~GT~I  214 (330)
                      |++.+.+.++|++|.|+ +|         +..||.|
T Consensus       184 a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i  218 (219)
T 2ij9_A          184 AAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVI  218 (219)
T ss_dssp             HHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEE
T ss_pred             HHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEe
Confidence            99999999999999997 54         2458876

>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*

Probab=99.78  E-value=3.9e-20  Score=170.38  Aligned_cols=155  Identities=14%  Similarity=0.089  Sum_probs=121.4

Q ss_pred             cchhHHHHHHHHHHhcCCccccccceeEEEECC-------CCCCC-CCCCchhhHHHHHHhhccCCCccEEEeeeeecCC
Q 020132           43 GELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP-------TSSNQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (330)
Q Consensus        43 GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~-------~~~g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (330)
                      ++.+++.++ +.|++.|++|+.+++.+..+++.       +..|+ ..++.    +.++.+++  .+.|||++|+ +.+.
T Consensus        81 ~~~~n~~l~-~~l~~~G~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~----~~i~~ll~--~g~ipVi~~~-g~~~  152 (258)
T 1gs5_A           81 AGTANKTLL-AWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSP----KLINSLLE--NGYLPVVSSI-GVTD  152 (258)
T ss_dssp             HTHHHHHHH-HHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCC----HHHHHHHH--TTCEEEECSE-EECT
T ss_pred             hccchHHHH-HHHHHCCCCeEEEeecCCCEEEEEEcCCCCCCcCceeEECH----HHHHHHHH--CCCEEEEeCC-cCCC
Confidence            345555565 46799999999999887532222       11222 23555    77888898  8999999998 8888


Q ss_pred             CCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc-----ccccccccc
Q 020132          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG-----ANVLHPRTI  189 (330)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g-----~~v~~p~a~  189 (330)
                      .|+++++   ++|++|+.+|.+|+|+ +++||||||||++|      ++++++++++|+.+++..|     +...++.|+
T Consensus       153 ~g~~~~~---~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~  222 (258)
T 1gs5_A          153 EGQLMNV---NADQAATALAATLGAD-LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAAL  222 (258)
T ss_dssp             TSCEEEC---CHHHHHHHHHHHHTCE-EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHH
T ss_pred             CCcEEEe---cHHHHHHHHHHHhCCc-EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence            9998887   5899999999999999 99999999999976      5789999999999997543     345566788


Q ss_pred             ceeeecccceEEeeeccc---------cCceeEee
Q 020132          190 IPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (330)
Q Consensus       190 ~~a~~~~i~v~i~~~~~~---------~~~GT~I~  215 (330)
                      +++.+.++|++|.|+.+|         +..||.|.
T Consensus       223 ~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~  257 (258)
T 1gs5_A          223 DAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             HHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             HHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence            888888999999998655         24588874

>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}

Probab=99.76  E-value=1.5e-19  Score=169.91  Aligned_cols=160  Identities=16%  Similarity=0.206  Sum_probs=126.7

Q ss_pred             ccchhHHHHHHHHHHhcCCcccccccee--EEEECCC----CCCC----CCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           42 HGELWSAQMLAAVVRKNGIDCKWMDTRE--VLIVNPT----SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        42 ~GE~~sa~~~~~~L~~~Gi~a~~l~~~~--~~~~~~~----~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      .|+.  ...++..|.+.|++++.+++.+  +......    .+|.    ..++.    +.++++++  .|.|||++|+ +
T Consensus       114 ~G~~--n~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~----~~i~~lL~--~g~IpVi~~v-~  184 (298)
T 2rd5_A          114 VGKV--NKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDP----SVLRPLVD--YGYIPVIASV-A  184 (298)
T ss_dssp             HHTH--HHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECG----GGHHHHHH--TTCEEEEESE-E
T ss_pred             hchH--HHHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECH----HHHHHHHh--CCCEEEEcCe-e
Confidence            5666  4568899999999999998764  3322110    1221    11333    67888888  8999999998 8


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc--ccccccc--
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--  187 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--  187 (330)
                      .++.|+.+++   ++|++|+.+|.+|+|++++|||||||||++||+  | ++++++++++|+.+++..|  .++|+|+  
T Consensus       185 ~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~  258 (298)
T 2rd5_A          185 ADDSGQAYNI---NADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVK  258 (298)
T ss_dssp             ECTTSCEEEE---CHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHH
T ss_pred             ECCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHH
Confidence            8888888776   589999999999999999999999999999998  4 8999999999999998654  5789984  


Q ss_pred             ccceeeecccc-eEEeeecccc----------CceeEeeC
Q 020132          188 TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICR  216 (330)
Q Consensus       188 a~~~a~~~~i~-v~i~~~~~~~----------~~GT~I~~  216 (330)
                      ++..|.++|++ ++|.|+..|+          ..||.|.+
T Consensus       259 aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~  298 (298)
T 2rd5_A          259 CCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG  298 (298)
T ss_dssp             HHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred             HHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence            77888899998 9999986542          45888853

>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}

Probab=99.76  E-value=5.2e-19  Score=164.09  Aligned_cols=124  Identities=15%  Similarity=0.166  Sum_probs=96.5

Q ss_pred             HHHHHhhccCCCccEEEeeeeecCCCCCccccc---ccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLK---RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILR  166 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lg---rggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~  166 (330)
                      ..++.+++  .+.|||++|+.+.+.....+..|   ++++|++|+.+|.+++|+++++||||||||++||+.+|++++++
T Consensus       132 ~~i~~lL~--~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~  209 (270)
T 2ogx_B          132 SAVPLSLA--EVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIP  209 (270)
T ss_dssp             CHHHHHCT--TCCEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEES
T ss_pred             HHHHHHHh--CCCEEEEeCCccccccccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcc
Confidence            45888887  89999999997655321111222   36899999999999999999999999999999999999999999


Q ss_pred             hhhhHHhhhhhhcccccccccccceeee--cccceEEeeecccc---------CceeEeeC
Q 020132          167 TLSYQEAWEMSYFGANVLHPRTIIPVMR--YDIPIVIRNIFNLS---------VPGIMICR  216 (330)
Q Consensus       167 ~is~~e~~~l~~~g~~v~~p~a~~~a~~--~~i~v~i~~~~~~~---------~~GT~I~~  216 (330)
                      +++++|+.+++..| .++++.+...+..  .+++++|.|+..|+         ..||.|.+
T Consensus       210 ~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~  269 (270)
T 2ogx_B          210 RISVDEMKAKGLHD-SILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA  269 (270)
T ss_dssp             EEEHHHHHHTTCCC-TTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred             eeCHHHHHHHhcCC-CcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence            99999999997644 4566543333222  46799999987653         56999864

>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*

Probab=99.76  E-value=1.5e-19  Score=171.67  Aligned_cols=162  Identities=15%  Similarity=0.179  Sum_probs=126.7

Q ss_pred             eccchhHHHHHHHHHHhcCCcccccccee--EEEECC---CCCCCC----CCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           41 GHGELWSAQMLAAVVRKNGIDCKWMDTRE--VLIVNP---TSSNQV----DPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        41 ~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~--~~~~~~---~~~g~~----~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      +.|+.  ...++..|.+.|++++.+++.+  +.....   ..+|..    .++.    +.++++++  .|.|||++++ +
T Consensus       126 ~~G~i--n~~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~----~~i~~lL~--~g~IpVi~~v-~  196 (321)
T 2v5h_A          126 LVGRV--NKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNS----EVIEPLLE--RGYIPVISSV-A  196 (321)
T ss_dssp             HHHTH--HHHHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECG----GGTHHHHH--TTCEEEEESE-E
T ss_pred             HhChH--HHHHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecH----HHHHHHHH--CCCeEEEeCc-e
Confidence            35655  4467889999999999887653  333221   022221    1333    67788888  8999999965 8


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc--cccccc--c
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--R  187 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p--~  187 (330)
                      .++.|...++   ++|++|+.+|.+|+|++++|+|||||||++||+   +++++++++++|+.+++..|  .++|+|  +
T Consensus       197 ~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~  270 (321)
T 2v5h_A          197 ADENGQSFNI---NADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVD  270 (321)
T ss_dssp             ECTTSCEEEC---CHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHH
T ss_pred             ECCCCCEEEe---CHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHH
Confidence            8888875543   589999999999999999999999999999998   48999999999999998754  678998  5


Q ss_pred             ccceeeecccc-eEEeeeccc----------cCceeEeeCC
Q 020132          188 TIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (330)
Q Consensus       188 a~~~a~~~~i~-v~i~~~~~~----------~~~GT~I~~~  217 (330)
                      |+..|.++|+| ++|.|+..+          +..||.|.+.
T Consensus       271 Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~  311 (321)
T 2v5h_A          271 CCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS  311 (321)
T ss_dssp             HHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred             HHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence            88889999998 999997543          3569999764

>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2

Probab=99.73  E-value=1e-18  Score=162.99  Aligned_cols=156  Identities=19%  Similarity=0.174  Sum_probs=124.0

Q ss_pred             ccchhHHHHHHHHHHhcCCcccccccee--EEEECC-C---CCCC----CCCCchhhHHHHHHhhccCCCccEEEeeeee
Q 020132           42 HGELWSAQMLAAVVRKNGIDCKWMDTRE--VLIVNP-T---SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIA  111 (330)
Q Consensus        42 ~GE~~sa~~~~~~L~~~Gi~a~~l~~~~--~~~~~~-~---~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~  111 (330)
                      .|+.  ...+...|.+.|++++.+++.+  +..... +   .+|.    ..++.    +.++++++  .|.|||++|+ +
T Consensus        99 ~G~~--~~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~----~~i~~ll~--~g~IpVi~~v-~  169 (282)
T 2bty_A           99 VGKI--NKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNP----EILHALIE--NDYIPVIAPV-G  169 (282)
T ss_dssp             HHTH--HHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECT----HHHHHHHH--TTCEEEEESE-E
T ss_pred             hhHH--HHHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecH----HHHHHHHH--CCCEEEECCC-c
Confidence            5766  4568899999999999997654  332221 0   1222    12344    78888998  8999999998 8


Q ss_pred             cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc--cccccc--c
Q 020132          112 STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--R  187 (330)
Q Consensus       112 ~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p--~  187 (330)
                      .++.|+.+++   ++|++|+.+|.+|+|+++++||||||||++ |      +++++++++|+.+++..|  .++|.|  +
T Consensus       170 ~~~~G~~~~~---~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-~------~~i~~i~~~e~~~~~~~g~~~gGM~~K~~  239 (282)
T 2bty_A          170 IGEDGHSYNI---NADTAAAEIAKSLMAEKLILLTDVDGVLKD-G------KLISTLTPDEAEELIRDGTVTGGMIPKVE  239 (282)
T ss_dssp             ECSSSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCEET-T------EECCEECHHHHHHHHTTTCSCTTHHHHHH
T ss_pred             cCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeecC-c------hhhhhCCHHHHHHHHHcCCCCCcHHHHHH
Confidence            8888888776   589999999999999999999999999997 3      799999999999998755  367887  5


Q ss_pred             ccceeeecccc-eEEeeecccc----------CceeEeeC
Q 020132          188 TIIPVMRYDIP-IVIRNIFNLS----------VPGIMICR  216 (330)
Q Consensus       188 a~~~a~~~~i~-v~i~~~~~~~----------~~GT~I~~  216 (330)
                      |+..|.++|+| ++|.|+..|+          ..||.|.+
T Consensus       240 aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~  279 (282)
T 2bty_A          240 CAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKE  279 (282)
T ss_dssp             HHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECC
T ss_pred             HHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEe
Confidence            88889999998 9999976543          46999965

>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*

Probab=99.73  E-value=1.2e-18  Score=159.81  Aligned_cols=144  Identities=16%  Similarity=0.174  Sum_probs=108.0

Q ss_pred             hHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccccC
Q 020132           46 WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDG  125 (330)
Q Consensus        46 ~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrgg  125 (330)
                      ++..+ .+.|.+.|++++.+++.++..  .   |+.  +.    +.++.+++  .|.|||++|+++.+.+|+.++   ++
T Consensus        84 ln~~~-v~~l~~~G~~a~~l~~~~~~~--~---g~v--~~----~~i~~ll~--~g~ipVi~~~~~~~~~~~~~~---~~  146 (249)
T 3ll5_A           84 LDLMV-IDAMIEMGMRPISVPISALRY--D---GRF--DY----TPLIRYID--AGFVPVSYGDVYIKDEHSYGI---YS  146 (249)
T ss_dssp             HHHHH-HHHHHHTTCCEEECCGGGSCB--S---SSB--CC----HHHHHHHH--TTCEEEEECEEEEEETTEEEE---EC
T ss_pred             HHHHH-HHHHHHCCCcEEEEcHHHccc--c---cEE--cH----HHHHHHHH--CCCEEEECCCEEEcCCCceee---ec
Confidence            34444 488999999999999988753  1   223  55    88899998  899999999888776666544   46


Q ss_pred             cchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhh--hccccccccc--cccee-eecccceE
Q 020132          126 SDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMS--YFGANVLHPR--TIIPV-MRYDIPIV  200 (330)
Q Consensus       126 sD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~--~~g~~v~~p~--a~~~a-~~~~i~v~  200 (330)
                      +|++|+.+|.+|+|++++++|||||||++||+.+|+++++++++ +++....  ..+.++|.|+  ++..+ .++|++++
T Consensus       147 ~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~  225 (249)
T 3ll5_A          147 GDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVY  225 (249)
T ss_dssp             HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCEE
T ss_pred             HHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEE
Confidence            89999999999999999999999999999999999999999994 2222222  1345788884  45555 88899999


Q ss_pred             Eeeeccc
Q 020132          201 IRNIFNL  207 (330)
Q Consensus       201 i~~~~~~  207 (330)
                      |.|+..+
T Consensus       226 I~~g~~~  232 (249)
T 3ll5_A          226 LINGNHP  232 (249)
T ss_dssp             EEETTSG
T ss_pred             EEeCCCh
Confidence            9997654

>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2

Probab=99.70  E-value=4e-18  Score=160.40  Aligned_cols=163  Identities=13%  Similarity=0.169  Sum_probs=126.1

Q ss_pred             eeccchhHHHHHHHHHHhcCCcccccccee--EEEECC------C---------CCCCC-CCCchhhHHHHHHhhccCCC
Q 020132           40 VGHGELWSAQMLAAVVRKNGIDCKWMDTRE--VLIVNP------T---------SSNQV-DPDFSESEKRLEKWFSQSPS  101 (330)
Q Consensus        40 ~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~--~~~~~~------~---------~~g~~-~~~~~~~~~~i~~~l~~~~~  101 (330)
                      ++.|+.  ...+...|.+.|++++.+++.+  +.....      +         .+|.. .+.... .+.++.+++  .|
T Consensus       102 ~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~-~~~i~~lL~--~g  176 (300)
T 2buf_A          102 VLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVN-VGLLNMLVK--GD  176 (300)
T ss_dssp             HHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEEC-HHHHHHHHH--TT
T ss_pred             HHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEEC-HHHHHHHHH--CC
Confidence            346777  7888999999999999988663  332221      0         12211 011111 378888998  89


Q ss_pred             ccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc-
Q 020132          102 NTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG-  180 (330)
Q Consensus       102 ~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g-  180 (330)
                      .|||++++ +.++.|...++   ++|++|+.+|.+|+|++++++|||||||++      +++++++++++|+.+++..| 
T Consensus       177 ~IpVi~~v-~~~~~G~~~~i---~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~  246 (300)
T 2buf_A          177 FIPVIAPI-GVGSNGESYNI---NADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGT  246 (300)
T ss_dssp             CEEEEEEE-EECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTC
T ss_pred             CEEEEcCc-eeCCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCC
Confidence            99999965 88888887765   489999999999999999999999999987      37899999999999998654 


Q ss_pred             -cccccc--cccceeeecccc-eEEeeecccc----------CceeEeeCC
Q 020132          181 -ANVLHP--RTIIPVMRYDIP-IVIRNIFNLS----------VPGIMICRP  217 (330)
Q Consensus       181 -~~v~~p--~a~~~a~~~~i~-v~i~~~~~~~----------~~GT~I~~~  217 (330)
                       .++|+|  +++..|.++|++ ++|.|+..|+          ..||.|.+.
T Consensus       247 ~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~  297 (300)
T 2buf_A          247 IYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR  297 (300)
T ss_dssp             SCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred             CCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence             578999  588888899999 9999975442          469999763

>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}

Probab=99.70  E-value=1.9e-18  Score=160.89  Aligned_cols=148  Identities=14%  Similarity=0.256  Sum_probs=122.2

Q ss_pred             HHHHHHHHhcCCccccccceeEEEECCCC-----CCC----CCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcc
Q 020132           49 QMLAAVVRKNGIDCKWMDTREVLIVNPTS-----SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPT  119 (330)
Q Consensus        49 ~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~-----~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~  119 (330)
                      +.+.+.|.+.|+++..+++.+..+++...     |++    .+++.    +.++.+++  .|.|||++| ++.+++|+.+
T Consensus       117 ~~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~----~~i~~lL~--~g~IPVi~~-v~~~~~G~~~  189 (279)
T 3l86_A          117 KNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINK----RVIEEFLE--NRQIPILAS-LGYSKEGDML  189 (279)
T ss_dssp             HHHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECH----HHHHHHHH--TTCEEEEES-EEECTTSCEE
T ss_pred             HHHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhH----HHHHHHHh--CCcEEEECC-cEECCCCCEe
Confidence            77899999999999999888743333221     221    12344    88999998  899999999 6888888887


Q ss_pred             cccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc--cccccc--cccceeeec
Q 020132          120 TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHP--RTIIPVMRY  195 (330)
Q Consensus       120 ~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p--~a~~~a~~~  195 (330)
                      ++   ++|++|+.+|.+|+|++++|+|||||||+       +++++++++++|+.+++..|  .++|.|  +|+..|.++
T Consensus       190 ~i---~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~  259 (279)
T 3l86_A          190 NI---NADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAA  259 (279)
T ss_dssp             EC---CHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHT
T ss_pred             ec---CHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHc
Confidence            76   58999999999999999999999999994       36789999999999998644  578888  588888899


Q ss_pred             ccc-eEEeeeccccCceeEeeC
Q 020132          196 DIP-IVIRNIFNLSVPGIMICR  216 (330)
Q Consensus       196 ~i~-v~i~~~~~~~~~GT~I~~  216 (330)
                      |++ ++|.|+++.   ||+|..
T Consensus       260 Gv~~v~I~~~~~~---GT~i~~  278 (279)
T 3l86_A          260 GVGQVLIGDNLLT---GTLITA  278 (279)
T ss_dssp             TCSEEEEESSSSC---SEEEEC
T ss_pred             CCCEEEEeccCCC---CeEEec
Confidence            998 999998874   999964

>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1

Probab=99.68  E-value=1.7e-17  Score=157.03  Aligned_cols=119  Identities=17%  Similarity=0.154  Sum_probs=97.0

Q ss_pred             HHHHHhhccCCCccEEEeee----eecCCCCCccccc---ccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHh
Q 020132           90 KRLEKWFSQSPSNTIIATGF----IASTPDNIPTTLK---RDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~----i~~~~~g~~~~lg---rggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a  162 (330)
                      +.++++++  .|.|||++|+    ++.+.++   ++|   ++++|++|+.+|.+|+|++++++|||||||++||+  |++
T Consensus       177 ~~i~~lL~--~g~IpV~~Gg~giPi~~~~d~---~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p~--~~a  249 (314)
T 1e19_A          177 ETIKKLVE--RGVIVIASGGGGVPVILEDGE---IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYGT--EKE  249 (314)
T ss_dssp             HHHHHHHH--TTCEEECSGGGCEEEEEETTE---EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTTS--TTC
T ss_pred             HHHHHHHH--CCCEEEEeCCCccCeEECCCC---cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCCC--CCC
Confidence            78899998  8999999975    3334332   344   37899999999999999999999999999999994  889


Q ss_pred             hhhhhhhhHHhhhhhhcc---ccccccc---ccceeeecccceEEeee------ccccCceeEeeC
Q 020132          163 VILRTLSYQEAWEMSYFG---ANVLHPR---TIIPVMRYDIPIVIRNI------FNLSVPGIMICR  216 (330)
Q Consensus       163 ~~i~~is~~e~~~l~~~g---~~v~~p~---a~~~a~~~~i~v~i~~~------~~~~~~GT~I~~  216 (330)
                      +++++++++|+.+++..|   .++|.|+   |++.+.+.+++++|.|.      ++. ..||+|.+
T Consensus       250 ~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~  314 (314)
T 1e19_A          250 QWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP  314 (314)
T ss_dssp             EECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred             eECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence            999999999999998654   3789996   66767778899999883      233 46998863

>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*

Probab=99.67  E-value=6.3e-17  Score=149.78  Aligned_cols=145  Identities=14%  Similarity=0.079  Sum_probs=109.8

Q ss_pred             HHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchh
Q 020132           50 MLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFS  129 (330)
Q Consensus        50 ~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~  129 (330)
                      .+++.|.++|++++.+.+.++...+++    ..++.    +.++.+++  .|.|||++||++.+.+|++.   ++++|++
T Consensus       102 ~l~~~l~~~G~~a~~l~~~d~~~~~~g----~~v~~----~~i~~lL~--~g~ipVi~~~~~~~~~g~~~---~~~~D~~  168 (266)
T 3k4o_A          102 IIIDTLQSYDIPAVSIQPSSFVVFGDK----LIFDT----SAIKEMLK--RNLVPVIHGDIVIDDKNGYR---IISGDDI  168 (266)
T ss_dssp             HHHHHHHTTTCCEEEECGGGTCEESSS----CBCCC----HHHHHHHH--TTCEEEEECEEEEESSSCEE---EECHHHH
T ss_pred             HHHHHHHHCCCcEEEeeHHHcCcccCc----eEecH----HHHHHHHH--CCCEEEEeCCEEEcCCCCee---eeCHHHH
Confidence            368899999999999999988766542    24566    88899998  89999999998888777654   3578999


Q ss_pred             HHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh--------ccccccccc--ccceeeecccce
Q 020132          130 AAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--------FGANVLHPR--TIIPVMRYDIPI  199 (330)
Q Consensus       130 A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~--------~g~~v~~p~--a~~~a~~~~i~v  199 (330)
                      |+.+|.+|+|++++++||||||| +||+.++      +++..|+.++..        .+.++|.|+  ++..|.+   ++
T Consensus       169 Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~i~------~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~---~v  238 (266)
T 3k4o_A          169 VPYLANELKADLILYATDVDGVL-IDNKPIK------RIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC---RG  238 (266)
T ss_dssp             HHHHHHHHTCSEEEEEESSSSSB-SSSSBCS------EECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---EE
T ss_pred             HHHHHHHcCCCEEEEEecCCeEE-eCCeecC------cCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc---CE
Confidence            99999999999999999999999 8887554      444443333322        344678885  3333333   89


Q ss_pred             EEeeeccc---------cCceeEeeCC
Q 020132          200 VIRNIFNL---------SVPGIMICRP  217 (330)
Q Consensus       200 ~i~~~~~~---------~~~GT~I~~~  217 (330)
                      +|.|+..|         +..||.|.+.
T Consensus       239 ~I~~g~~~~~l~~~l~g~~~GT~i~~~  265 (266)
T 3k4o_A          239 FVFNGNKANNIYKALLGEVEGTEIDFS  265 (266)
T ss_dssp             EEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred             EEEeCCCccHHHHHhCCCCCceEEEeC
Confidence            99997644         3469999763

>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}

Probab=99.56  E-value=1.5e-15  Score=143.83  Aligned_cols=119  Identities=19%  Similarity=0.255  Sum_probs=93.9

Q ss_pred             HHHHHhhccCCCccEEEeee----eecCCCCC----cccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhH
Q 020132           90 KRLEKWFSQSPSNTIIATGF----IASTPDNI----PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSE  161 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~----i~~~~~g~----~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~  161 (330)
                      +.++.+|+  .|.|||++|+    ++.+++|.    ..++   ++|.+|+.+|.+|+|++++|+|||||||+ ||+ .|+
T Consensus       177 ~~i~~lL~--~g~IpI~~g~~g~pv~~~~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~  249 (316)
T 2e9y_A          177 DLIAEASA--ESPAVVALGGGGVPVVERPGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REG  249 (316)
T ss_dssp             HHHHHHHH--HCSEEEECGGGCEEEEECTTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STT
T ss_pred             HHHHHHHH--CCCEEEEECCCCCCeeECCCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCC
Confidence            78899998  7899999864    34456663    2222   68999999999999999999999999999 885 689


Q ss_pred             hhhhhhhhhHHhhhhhhc---cccccccc--ccceeeeccc-ceEEeeec------cccCceeEeeC
Q 020132          162 AVILRTLSYQEAWEMSYF---GANVLHPR--TIIPVMRYDI-PIVIRNIF------NLSVPGIMICR  216 (330)
Q Consensus       162 a~~i~~is~~e~~~l~~~---g~~v~~p~--a~~~a~~~~i-~v~i~~~~------~~~~~GT~I~~  216 (330)
                      ++++++++++|+.+++..   +.++|.|+  ++..+.++|+ +++|.|..      .. ..||.|.+
T Consensus       250 a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~  315 (316)
T 2e9y_A          250 ERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML  315 (316)
T ss_dssp             CEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred             CcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence            999999999999999763   34678884  5666678899 78887631      22 46898864

>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*

Probab=99.54  E-value=2.2e-15  Score=149.14  Aligned_cols=152  Identities=15%  Similarity=0.100  Sum_probs=116.0

Q ss_pred             HHHHHHHHhcCCcc----ccccceeEEEECCCC--------CCC----CCCCchhhHHHHHHhhccCCCccEEEeeeeec
Q 020132           49 QMLAAVVRKNGIDC----KWMDTREVLIVNPTS--------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (330)
Q Consensus        49 ~~~~~~L~~~Gi~a----~~l~~~~~~~~~~~~--------~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (330)
                      ..+.+.|. .|+++    +.+++.+..+.+...        +|.    ..++.    +.++.+|+  .|.|||++++ +.
T Consensus       124 ~~l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~----~~i~~lL~--~g~ipIi~~~-~~  195 (456)
T 3d2m_A          124 SRFEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDT----AALRFQLD--AGNIVWMPPL-GH  195 (456)
T ss_dssp             HHHHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECH----HHHHHHHH--TTCEEEECSE-EE
T ss_pred             HHHHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECH----HHHHHHHH--CCCeEEECCc-cc
Confidence            35577888 99998    777776632222111        111    12333    78899998  8999999997 77


Q ss_pred             CCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccc--cccc
Q 020132          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP--RTII  190 (330)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p--~a~~  190 (330)
                      +..|+..++   ++|.+|+.+|.+|+|++++|+|||||||++      +++++++++++|+.+++..|.++|.|  +|+.
T Consensus       196 ~~~g~~~~~---~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa~  266 (456)
T 3d2m_A          196 SYGGKTFNL---DMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSAV  266 (456)
T ss_dssp             CTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             CCCCCEEEE---CHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHHH
Confidence            888888775   589999999999999999999999999986      47899999999999998777789999  5788


Q ss_pred             eeeecccc-eEEeeeccc----------cCceeEeeCC
Q 020132          191 PVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (330)
Q Consensus       191 ~a~~~~i~-v~i~~~~~~----------~~~GT~I~~~  217 (330)
                      .|.++|++ ++|.|+..|          +..||.|.+.
T Consensus       267 ~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~  304 (456)
T 3d2m_A          267 AALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKE  304 (456)
T ss_dssp             HHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECC
T ss_pred             HHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecc
Confidence            88889996 999987432          3469999765

>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*

Probab=99.54  E-value=2.9e-15  Score=141.01  Aligned_cols=158  Identities=13%  Similarity=0.123  Sum_probs=117.4

Q ss_pred             ccchhHHHHHHHHHHhcCCccccccceeEEEECC---CCCC---C-CCCCchhhHHHHHHhhccCCCccEEEeeeeecCC
Q 020132           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTP  114 (330)
Q Consensus        42 ~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~---~~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~  114 (330)
                      .|+ + ...+++.|.+.|++|+++.+.-+ ....   ..+|   + .++|.    +.++.+++  .|.|||++|+ +.+.
T Consensus       123 ~~~-v-n~~lv~~L~~~G~~Av~l~gg~~-~a~~~~~~d~g~~G~i~~v~~----~~i~~lL~--~g~IpVi~~~-g~~~  192 (307)
T 3zzh_A          123 FLE-Q-NLKLVTALEQLGVRARPITSGVF-TADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALPILTSL-AETA  192 (307)
T ss_dssp             HHH-H-HHHHHHHHHHTTCCEEEECSSSE-EEEESCHHHHBSBEEEEEECC----HHHHHHHH--HTCEEEECCC-EECT
T ss_pred             HHH-H-HHHHHHHHHhCCCCeeEEcCCcE-EEEecCccccCccccccccCH----HHHHHHHH--CCCEEEEeCC-eECC
Confidence            454 3 45668999999999999987433 2221   0122   2 34666    88999998  7999999998 7788


Q ss_pred             CCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHH-hhhhhhcc--ccccccc--cc
Q 020132          115 DNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYFG--ANVLHPR--TI  189 (330)
Q Consensus       115 ~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e-~~~l~~~g--~~v~~p~--a~  189 (330)
                      +|+++++   ++|.+|+.+|.+|+|++++|+|||||||++     +++++++++++.| +.+++..|  .++|.|+  ++
T Consensus       193 ~G~~~~i---~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa  264 (307)
T 3zzh_A          193 SGQMLNV---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREI  264 (307)
T ss_dssp             TCBEEBC---CHHHHHHHHHHHHCCSEEEEECSSCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHH
T ss_pred             CCcEEec---CHHHHHHHHHHhCCCCEEEEEeCCcceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHH
Confidence            8888776   589999999999999999999999999986     4688999999975 56776543  5788886  22


Q ss_pred             ceeee---cccceEEeeec-------cccCceeEeeCC
Q 020132          190 IPVMR---YDIPIVIRNIF-------NLSVPGIMICRP  217 (330)
Q Consensus       190 ~~a~~---~~i~v~i~~~~-------~~~~~GT~I~~~  217 (330)
                      +.|.+   .+.++.|.+..       ..+..||.|.+.
T Consensus       265 ~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~I~~~  302 (307)
T 3zzh_A          265 KELLDYLPRSSSVAIINVQDLQKELFTDSGAGTMIRRG  302 (307)
T ss_dssp             HHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEEEECC
T ss_pred             HHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEEEecC
Confidence            33333   37788888742       234569999764

>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*

Probab=99.51  E-value=4.3e-15  Score=140.27  Aligned_cols=119  Identities=16%  Similarity=0.202  Sum_probs=93.8

Q ss_pred             HHHHHhhccCCCccEEEeeeee-----cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIA-----STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~-----~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~  164 (330)
                      +.++.+++  .|.|||++|+.|     .+..|+..+   .++|++|+.+|.+|+|++++|+|||||||+ || ..|++++
T Consensus       173 ~~i~~lL~--~g~IpIi~Gg~Gipv~~~~~~g~~~~---~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~  245 (310)
T 2we5_A          173 ETINTLIK--NDIITISCGGGGIPVVGQELKGVEAV---IDKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQ  245 (310)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEETTTTEECCCC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEE
T ss_pred             HHHHHHHH--CCCEEEEECCCCCCCcCCCCCCcEee---cCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeE
Confidence            88999998  899999997633     122344443   358999999999999999999999999999 78 4789999


Q ss_pred             hhhhhhHHhhhhhhcc---ccccccc--ccceeeeccc--ceEEeee------ccccCceeEee
Q 020132          165 LRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI--PIVIRNI------FNLSVPGIMIC  215 (330)
Q Consensus       165 i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i--~v~i~~~------~~~~~~GT~I~  215 (330)
                      +++++++|+.+++..|   .++|.|+  |+..|.++|+  +++|.+.      +..+..||.|.
T Consensus       246 i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~  309 (310)
T 2we5_A          246 LTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT  309 (310)
T ss_dssp             CCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred             CCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence            9999999999997643   3678884  6667778898  8888752      22334688874

>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*

Probab=99.51  E-value=1.6e-14  Score=142.83  Aligned_cols=155  Identities=13%  Similarity=0.121  Sum_probs=117.3

Q ss_pred             HHHHHHHHHhcCCccccccceeEEEECC---CCCCC----CCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCccc
Q 020132           48 AQMLAAVVRKNGIDCKWMDTREVLIVNP---TSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT  120 (330)
Q Consensus        48 a~~~~~~L~~~Gi~a~~l~~~~~~~~~~---~~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~  120 (330)
                      ...++..|.+.|++|+++.+.-+ ....   ..+|.    .+++.    +.++.+|+  .|.|||++|+ +.+.+|++++
T Consensus       127 n~~lv~~L~~~G~~Avglsgg~~-~a~~~~~~d~g~vG~I~~v~~----~~I~~lL~--~G~IPVi~~~-g~~~~G~~~n  198 (464)
T 4ab7_A          127 NLKLVTALEQLGVRARPITSGVF-TADYLDKDKYKLVGNIKSVTK----EPIEASIK--AGALPILTSL-AETASGQMLN  198 (464)
T ss_dssp             HHHHHHHHHHTTCCEEEECSSSE-EEEESCTTTTBSBEEEEEECC----HHHHHHHH--TTCEEEEESE-EECTTCBEEE
T ss_pred             HHHHHHHHHhCCCCeEEECCCcE-EEEecCccccCCcCcccccCH----HHHHHHHH--CCcEEEEcCC-cCCCCCCEEE
Confidence            35678999999999999987433 2221   12331    24666    88999998  8999999998 8888898887


Q ss_pred             ccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHH-hhhhhhcc--ccccccc--ccceee--
Q 020132          121 LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE-AWEMSYFG--ANVLHPR--TIIPVM--  193 (330)
Q Consensus       121 lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e-~~~l~~~g--~~v~~p~--a~~~a~--  193 (330)
                      +   ++|.+|+.+|.+|+|++++++|||+|||++     +++++++++++.| +.++...|  .++|.|+  +++.|.  
T Consensus       199 i---~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~  270 (464)
T 4ab7_A          199 V---NADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDY  270 (464)
T ss_dssp             C---CHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTT
T ss_pred             e---cHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHh
Confidence            6   589999999999999999999999999986     4578999999976 56666543  5679886  333333  


Q ss_pred             -ecccceEEeeec-------cccCceeEeeCCC
Q 020132          194 -RYDIPIVIRNIF-------NLSVPGIMICRPP  218 (330)
Q Consensus       194 -~~~i~v~i~~~~-------~~~~~GT~I~~~~  218 (330)
                       +.+.++.|.+..       ..+..||.|.+..
T Consensus       271 v~~g~~v~I~~~~~ll~eLft~~g~GT~I~~~~  303 (464)
T 4ab7_A          271 LPRSSSVAIINVQDLQKELFTDSGAGTMIRRGY  303 (464)
T ss_dssp             SCTTCEEEEEESTTHHHHTTSSSTTSEEEECCC
T ss_pred             cccCcEEEEecChHHHHHHhcCCCCceEEecCc
Confidence             347788888742       2345699998763

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=99.50  E-value=8.4e-15  Score=129.79  Aligned_cols=74  Identities=26%  Similarity=0.384  Sum_probs=69.9

Q ss_pred             cccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHH
Q 020132          232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (330)
Q Consensus       232 ~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~  307 (330)
                      ...+.+++++|+|++||.||+++||+++|+|++|+++||||.||+  +||++|||+|+++|.++|+++||+.|++.
T Consensus       106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIs--tSEi~IS~vV~~~d~~~Av~aLH~~F~L~  179 (200)
T 4go7_X          106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAFGLG  179 (200)
T ss_dssp             CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHHTC-
T ss_pred             eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEE--ccCCEEEEEEeHHHHHHHHHHHHHHhCCC
Confidence            467888999999999999999999999999999999999999998  78999999999999999999999999753

>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*

Probab=99.46  E-value=4.5e-14  Score=139.67  Aligned_cols=157  Identities=14%  Similarity=0.149  Sum_probs=117.8

Q ss_pred             ccchhHHHHHHHHHHhcCCccccccceeEE--EECCCCCCC----CCCCchhhHHHHHHhhccCCCccEEEeeeeecCCC
Q 020132           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPTSSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (330)
Q Consensus        42 ~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~--~~~~~~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (330)
                      .| .++. .+++.|.+.|++|+++.+..+.  ..+...+|.    .+++.    +.++.+|+  .|.|||++++ +.+..
T Consensus       133 lg-~vn~-~lv~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpVi~p~-g~~~~  203 (460)
T 3s6g_A          133 LT-QANL-ALVDAIRDAGGRAAAVPRGVFEADIVDADKLGRVGEPRHIHL----DLVGSAAR--AGQAAILACL-GETPD  203 (460)
T ss_dssp             HH-HHHH-HHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSEEEEEEECC----HHHHHHHH--TTCEEEEECE-EECTT
T ss_pred             HH-HHHH-HHHHHHHhCCCCceEEecCeEEEEEecCcccCccCcceEEcH----HHHHHHHH--CCcEEEEECc-eECCC
Confidence            45 4554 4456999999999999985542  112223332    34666    88999998  8999999987 77888


Q ss_pred             CCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhH-Hhhhhhhcc--ccccccc--ccc
Q 020132          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYFG--ANVLHPR--TII  190 (330)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~-e~~~l~~~g--~~v~~p~--a~~  190 (330)
                      |+++++   ++|.+|+.+|.+|+|++++++|||+|||++      +++++++++.. |+.+++..+  .++|.|+  ++.
T Consensus       204 G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~  274 (460)
T 3s6g_A          204 GTLVNI---NADVAVRALVHALQPYKVVFLTGTGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIK  274 (460)
T ss_dssp             CCEEEE---CHHHHHHHHHHHHCCSEEEEECSSCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHH
T ss_pred             CcEEec---CHHHHHHHHHHHcCCCEEEEEeCCccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHH
Confidence            988776   589999999999999999999999999985      36889999985 777777543  5788884  555


Q ss_pred             eeeeccc-ceEEeeeccc----------cCceeEeeCC
Q 020132          191 PVMRYDI-PIVIRNIFNL----------SVPGIMICRP  217 (330)
Q Consensus       191 ~a~~~~i-~v~i~~~~~~----------~~~GT~I~~~  217 (330)
                      .|.+ ++ ++.+.++..|          +..||.|.+.
T Consensus       275 ~a~~-gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~  311 (460)
T 3s6g_A          275 RLLD-DLPLSSSVSITRPSELARELFTHAGSGTLIRRG  311 (460)
T ss_dssp             HHHH-TSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred             HHHh-CCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence            5554 55 4777776543          3469999875

>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}

Probab=99.44  E-value=2.9e-14  Score=133.87  Aligned_cols=123  Identities=14%  Similarity=0.140  Sum_probs=92.1

Q ss_pred             HHHHHhhccCCCccEEEeeeeec---CCCCCcc-cccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIAS---TPDNIPT-TLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~---~~~g~~~-~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i  165 (330)
                      +.|+.+|+  .|.|||++|+-|.   ++++..+ +..++++|.+|+.+|.+|+|+.|+|+|||||||+ ||+ .|+++++
T Consensus       179 ~~I~~LL~--~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I  254 (317)
T 3kzf_A          179 GVIKTLID--NNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKL  254 (317)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEEC
T ss_pred             HHHHHHHH--CCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeEC
Confidence            77888898  8899998865443   2233222 2235679999999999999999999999999999 999 5899999


Q ss_pred             hhhhhHHhhhhhhcc---ccccccc--cccee-eecccceEEeeeccc-----cCceeEeeC
Q 020132          166 RTLSYQEAWEMSYFG---ANVLHPR--TIIPV-MRYDIPIVIRNIFNL-----SVPGIMICR  216 (330)
Q Consensus       166 ~~is~~e~~~l~~~g---~~v~~p~--a~~~a-~~~~i~v~i~~~~~~-----~~~GT~I~~  216 (330)
                      ++++++|+.+++..|   .+.|.|+  ++..+ .+.+.+++|.|....     ...||+|.+
T Consensus       255 ~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~~GT~I~~  316 (317)
T 3kzf_A          255 EEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIK  316 (317)
T ss_dssp             CEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTSSSEEEEC
T ss_pred             cCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCCCCeEEec
Confidence            999999999987643   4688885  44444 434567999987422     126999875

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=99.44  E-value=7.5e-14  Score=119.08  Aligned_cols=74  Identities=23%  Similarity=0.254  Sum_probs=64.3

Q ss_pred             cccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHH
Q 020132          232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (330)
Q Consensus       232 ~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~  307 (330)
                      ...+++.+++++|+++|.+|+++||+++++|++|+  ||||.||+|++|+++|||+|+++|.++|++.||+.|+..
T Consensus        79 ~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh~~f~~~  152 (157)
T 3mah_A           79 IGDVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNS  152 (157)
T ss_dssp             TEEEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHHHHHHC-
T ss_pred             cCeEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHHHHHhcc
Confidence            46788899999999999999999999999999999  999999999999999999999999999999999999864

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=99.36  E-value=3.1e-13  Score=118.09  Aligned_cols=73  Identities=26%  Similarity=0.387  Sum_probs=69.4

Q ss_pred             cccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       232 ~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      +..+.+++++++|++||.||+++||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|+++||+.|+.
T Consensus        87 ~~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Is--tSei~Is~vV~~~d~~~Av~aLH~~f~l  159 (181)
T 3s1t_A           87 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAFGL  159 (181)
T ss_dssp             CSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHHTC
T ss_pred             cceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEeHHHHHHHHHHHHHHHcC
Confidence            456888899999999999999999999999999999999999999  7899999999999999999999999964

>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}

Probab=99.34  E-value=1e-13  Score=137.26  Aligned_cols=158  Identities=12%  Similarity=0.133  Sum_probs=114.2

Q ss_pred             ccchhHHHHHHHHHHhcCCccccccceeEE--EECCCCCC---C-CCCCchhhHHHHHHhhccCCCccEEEeeeeecCCC
Q 020132           42 HGELWSAQMLAAVVRKNGIDCKWMDTREVL--IVNPTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (330)
Q Consensus        42 ~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~--~~~~~~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (330)
                      .| .++..+ ++.|++.|++|+++.+..+.  ..++..+|   + .+++.    +.++.+|+  .|.|||+++. +.+..
T Consensus       136 ~g-~vn~~L-v~aL~~~G~~Av~lsg~~~~a~~~~~~d~g~~G~I~~v~~----~~i~~lL~--~g~IpVi~pv-g~~~~  206 (467)
T 3s6k_A          136 FQ-ASNLKL-VEALQQNGARATSITGGVFEAEYLNRDTYGLVGEVKAVNL----APIEASLQ--AGSIPVITSL-GETPS  206 (467)
T ss_dssp             HH-HHHHHH-HHHHHHHTCCBCCCCSSSBCCCBSCSSSSBSBBCCCCBCC----HHHHTHHH--HTCBCCCCSC-CCCSS
T ss_pred             HH-HHHHHH-HHHHHhCCCCceEEcCccEEEEeccCcccCccceEEEEcH----HHHHHHHH--CCCEEEEECc-eECCC
Confidence            45 455544 55999999999999985441  11222333   2 34666    88999998  7999999953 44667


Q ss_pred             CCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhH-Hhhhhhhc--cccccccc--ccc
Q 020132          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQ-EAWEMSYF--GANVLHPR--TII  190 (330)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~-e~~~l~~~--g~~v~~p~--a~~  190 (330)
                      |+++++   ++|.+|+.+|.+|+|++++|+|||+|||++|      ++++++++.. |+.+++..  +.++|.|+  ++.
T Consensus       207 G~~~~i---~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~  277 (467)
T 3s6k_A          207 GQILNV---NADFAANELVQELQPYKIIFLTGTGGLLDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIK  277 (467)
T ss_dssp             SCCCBC---CHHHHHHHHHHHHCCSSCCCCCSSCSCCCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHH
T ss_pred             CcEEec---CHHHHHHHHHHhcCCCEEEEEecccceeCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHH
Confidence            888776   5899999999999999999999999999854      6789999885 77777653  35788884  555


Q ss_pred             eeeecccceEEeeeccc----------cCceeEeeCC
Q 020132          191 PVMRYDIPIVIRNIFNL----------SVPGIMICRP  217 (330)
Q Consensus       191 ~a~~~~i~v~i~~~~~~----------~~~GT~I~~~  217 (330)
                      .|.+.+.++.+.++..|          +..||.|.+.
T Consensus       278 ~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~  314 (467)
T 3s6k_A          278 DLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG  314 (467)
T ss_dssp             HHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred             HHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence            55553324666666443          3469999765

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=99.33  E-value=5.2e-13  Score=114.89  Aligned_cols=72  Identities=28%  Similarity=0.433  Sum_probs=67.4

Q ss_pred             cceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHH
Q 020132          234 GFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (330)
Q Consensus       234 ~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~  307 (330)
                      .+.+.+++++|++||.+|+++||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|+++||+.|+..
T Consensus        88 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vv~~~d~~~Av~~Lh~~f~~~  159 (167)
T 2dt9_A           88 EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVRISVIIPAEYAEAALRAVHQAFELD  159 (167)
T ss_dssp             EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTC--
T ss_pred             cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE--ccCCEEEEEEeHHHHHHHHHHHHHHHcCC
Confidence            6778899999999999999999999999999999999999998  78999999999999999999999998743

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=99.28  E-value=1.4e-12  Score=113.42  Aligned_cols=74  Identities=28%  Similarity=0.453  Sum_probs=69.7

Q ss_pred             cccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHH
Q 020132          232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (330)
Q Consensus       232 ~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~  307 (330)
                      +..+.+.+++++|+++|.+|++.||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|+++||+.|+.+
T Consensus        86 ~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV~~~d~~~Av~~Lh~~F~l~  159 (178)
T 2dtj_A           86 WTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQFQLG  159 (178)
T ss_dssp             CSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHHTCC
T ss_pred             CCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHHHHHHHHHccC
Confidence            456888999999999999999999999999999999999999998  78999999999999999999999999754

>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}

Probab=99.20  E-value=1.6e-11  Score=125.36  Aligned_cols=73  Identities=30%  Similarity=0.441  Sum_probs=69.3

Q ss_pred             ccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHH
Q 020132          233 KGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREA  307 (330)
Q Consensus       233 ~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~  307 (330)
                      ..+.+++++|+||+||.||+++||+++|+|++|+++||||.||+  +||++|||+|+++|.++|+++||+.|+..
T Consensus       519 ~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mis--tSEi~Is~vV~~~~~~~Av~alh~~F~l~  591 (600)
T 3l76_A          519 AAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSEIKISCVVPQDRGVDALKAAHSAFNLA  591 (600)
T ss_dssp             CEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTTT
T ss_pred             ceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEE--cCCceEEEEEeHHHHHHHHHHHHHHhCCC
Confidence            45888899999999999999999999999999999999999999  89999999999999999999999999643

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=99.20  E-value=1.3e-11  Score=106.11  Aligned_cols=73  Identities=29%  Similarity=0.384  Sum_probs=68.7

Q ss_pred             cccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       232 ~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      +..++..+++++|+++|.+|.+.||+++++|++|+++||||.|++  +|+.++||+|+++|.+++++.||+.|+.
T Consensus        94 ~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is--tse~~is~vv~~~d~~~av~~Lh~~f~l  166 (167)
T 2re1_A           94 AASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLIDEKYMELATRVLHKAFNL  166 (167)
T ss_dssp             CSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE--ECSSEEEEEEEGGGHHHHHHHHHHHTTC
T ss_pred             CceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE--cccCEEEEEEeHHHHHHHHHHHHHHhcC
Confidence            456788899999999999999999999999999999999999998  7899999999999999999999999863

>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}

Probab=99.10  E-value=2.6e-11  Score=115.15  Aligned_cols=119  Identities=15%  Similarity=0.177  Sum_probs=85.8

Q ss_pred             HHHHHhhccCCCccEEEeee--eec-----CCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHh
Q 020132           90 KRLEKWFSQSPSNTIIATGF--IAS-----TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~--i~~-----~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a  162 (330)
                      +.++.+++  .+.|||..|.  ++.     +..|...+   ++.|.+|+.+|.+++|+.|+|+|||||||+.+|+  |++
T Consensus       194 ~~I~~L~~--~g~Ivi~~ggggipv~~~~~~~~G~~~v---id~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~  266 (332)
T 4axs_A          194 DAIKQNVN--NGCVCIVGGGGGIPTIIQDNQYIGVDGV---IDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQ  266 (332)
T ss_dssp             HHHHHHHH--TTCEEECCGGGCEEEEESSSCEEECSSC---CCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTC
T ss_pred             HHHHHhhc--CCeEEEecccCCCCccccCCcccCceee---echHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cch
Confidence            67788887  7888776442  111     11233333   4689999999999999999999999999998876  778


Q ss_pred             hhhhhhhhHHhhhhhhcc---ccccccc--ccceeeeccc--ceEEeeeccc-----cCceeEee
Q 020132          163 VILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI--PIVIRNIFNL-----SVPGIMIC  215 (330)
Q Consensus       163 ~~i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i--~v~i~~~~~~-----~~~GT~I~  215 (330)
                      +++++++.+|+.++...|   .+.|.|+  |+..+.+.+.  .+.|.+..+.     ...||+|.
T Consensus       267 ~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~~GT~Iv  331 (332)
T 4axs_A          267 KALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKII  331 (332)
T ss_dssp             EECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTSSSEEEB
T ss_pred             hhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCCCCcEEe
Confidence            999999999999998644   5779995  5555555554  4556543211     13589885

>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A

Probab=99.10  E-value=4.9e-11  Score=116.99  Aligned_cols=73  Identities=29%  Similarity=0.457  Sum_probs=69.1

Q ss_pred             cccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       232 ~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      +..+.+.+|+++|++||.+|+++||+++++|++|+++||||.||+  +|+.+|||+|+++|.++|+++||+.|+.
T Consensus       335 ~~~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is--~Se~~is~vV~~~d~~~Av~~Lh~~f~~  407 (421)
T 3ab4_A          335 WTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQFQL  407 (421)
T ss_dssp             CSEEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHHHTTC
T ss_pred             CceEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHHHHHHHHHhc
Confidence            346888999999999999999999999999999999999999998  7899999999999999999999999974

>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X

Probab=98.89  E-value=7.7e-10  Score=97.85  Aligned_cols=83  Identities=29%  Similarity=0.421  Sum_probs=72.1

Q ss_pred             ccCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCc-----ceeeeecchhhHHHHHHHHHH
Q 020132          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       228 ~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se-----~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      ++..+++|++++|.++|++.|  |.+.||+++++|+.|+++||+|+||+|+.|+     ..++|.++++|..++.+.|.+
T Consensus        22 E~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~~d~~~~~~~l~~   99 (200)
T 4go7_X           22 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDS   99 (200)
T ss_dssp             CSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEGGGHHHHHHHHHT
T ss_pred             ccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecchhhHHHHHHHHHH
Confidence            345789999999999999986  9999999999999999999999999998764     468999999999999999976


Q ss_pred             HHHHHhccCcc
Q 020132          303 KFREALNAGRL  313 (330)
Q Consensus       303 ~f~~~~~~~~i  313 (330)
                       +..++....+
T Consensus       100 -~~~~~~~~~v  109 (200)
T 4go7_X          100 -LRNEIGFSQL  109 (200)
T ss_dssp             -THHHHCCSEE
T ss_pred             -HHhhhceeeE
Confidence             5566655544

>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A

Probab=98.89  E-value=1.1e-09  Score=93.93  Aligned_cols=78  Identities=27%  Similarity=0.373  Sum_probs=70.4

Q ss_pred             CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC-----cceeeeecchhhHHHHHHHHHHHH
Q 020132          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       230 ~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s-----e~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      ..+++|+.++|+++|+++|  +.+.||+++++|+.|+++||+|+||+|+.+     +.+++|+++++|.+++.+.|++ +
T Consensus         5 ~~v~gIa~~~~~a~Itv~g--~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~-~   81 (167)
T 2dt9_A            5 KAVTGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEP-V   81 (167)
T ss_dssp             CCEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHH-H
T ss_pred             CceeEEEEeCCEEEEEEec--CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHH-H
Confidence            4589999999999999997  788899999999999999999999999876     7899999999999999999987 5


Q ss_pred             HHHhcc
Q 020132          305 REALNA  310 (330)
Q Consensus       305 ~~~~~~  310 (330)
                      ..+++.
T Consensus        82 ~~~~~~   87 (167)
T 2dt9_A           82 LAEIGG   87 (167)
T ss_dssp             HHHHCC
T ss_pred             HHHhCC
Confidence            566654

>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}

Probab=98.85  E-value=1.7e-09  Score=94.18  Aligned_cols=82  Identities=29%  Similarity=0.437  Sum_probs=71.6

Q ss_pred             cCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCc-----ceeeeecchhhHHHHHHHHHHH
Q 020132          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE-----HSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       229 ~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se-----~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      ...+++|+.++|+++|+|.|  |.+.||+++++|+.|+++||+|+||+|+.++     .+|+|++++++.+++.+.|++ 
T Consensus         4 ~~~V~gIa~~~~~~~Iti~~--~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a~~~L~~-   80 (181)
T 3s1t_A            4 DPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAAVEKLDS-   80 (181)
T ss_dssp             CCEEEEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHHHHHHHH-
T ss_pred             CCcEEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHHHHHHHH-
Confidence            35689999999999999996  8999999999999999999999999997765     589999999999999998987 


Q ss_pred             HHHHhccCcc
Q 020132          304 FREALNAGRL  313 (330)
Q Consensus       304 f~~~~~~~~i  313 (330)
                      +..++....+
T Consensus        81 ~~~el~~~~v   90 (181)
T 3s1t_A           81 LRNEIGFSQL   90 (181)
T ss_dssp             THHHHCCSEE
T ss_pred             HHHhcCcceE
Confidence            5566654443

>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}

Probab=98.78  E-value=1.5e-09  Score=92.21  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=63.8

Q ss_pred             ccCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhh-HHHHHHHHHH
Q 020132          228 IDSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKE-VKAVAEALES  302 (330)
Q Consensus       228 ~~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d-~~~av~~Lh~  302 (330)
                      +...+++|+.++|+++|++.|.+|.+.||+.+++|+.|+++||+|+||+|  |+.+|||++++.+ +.++++.|++
T Consensus         5 ~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~--s~~~Isf~v~~~~~~~~il~~l~~   78 (157)
T 3mah_A            5 EKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT--SEVGVSLTIDNDKNLPDIVRALSD   78 (157)
T ss_dssp             --CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC--CSSEEEEEESCCTTHHHHHHHHTT
T ss_pred             CCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe--cCCEEEEEECChHHHHHHHHHHhc
Confidence            34678999999999999999999999999999999999999999999995  5789999999987 6666666654

>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}

Probab=98.72  E-value=8.5e-09  Score=88.44  Aligned_cols=79  Identities=34%  Similarity=0.473  Sum_probs=67.5

Q ss_pred             cCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC---cceeeeecchhhHHHHHHHHHHHHH
Q 020132          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS---EHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       229 ~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s---e~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      ...+++|+.++|+++|++.|  |.+.||+++++|+.|+++||+|+||+|+.+   +.+++|+|++++.+++.+.|++ +.
T Consensus        13 ~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~a~~~l~~-~~   89 (167)
T 2re1_A           13 RAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQTLEILSE-RQ   89 (167)
T ss_dssp             --CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHHHHHHHHH-SS
T ss_pred             CCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHHHHHHHHH-HH
Confidence            34699999999999999998  889999999999999999999999999866   7899999999999999988877 44


Q ss_pred             HHhcc
Q 020132          306 EALNA  310 (330)
Q Consensus       306 ~~~~~  310 (330)
                      .+++.
T Consensus        90 ~~l~~   94 (167)
T 2re1_A           90 DSIGA   94 (167)
T ss_dssp             TTTTC
T ss_pred             HHcCC
Confidence            44443

>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*

Probab=98.49  E-value=4.6e-08  Score=84.75  Aligned_cols=77  Identities=29%  Similarity=0.404  Sum_probs=67.2

Q ss_pred             CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC-----cceeeeecchhhHHHHHHHHHHHH
Q 020132          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-----EHSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       230 ~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s-----e~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      ..+++|+.++|+++|+|.+  +.+.||+++++|+.|+++||+|+||+|+.+     +.+|+|+++.+|.+++.+.|++ +
T Consensus         4 ~~V~gIa~~~~~~~Itv~~--~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~-~   80 (178)
T 2dtj_A            4 AVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKK-L   80 (178)
T ss_dssp             CEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHT-T
T ss_pred             CcEEEEEecCCEEEEEEec--CCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHH-H
Confidence            4589999999999999986  678899999999999999999999999855     7889999999999999888876 4


Q ss_pred             HHHhc
Q 020132          305 REALN  309 (330)
Q Consensus       305 ~~~~~  309 (330)
                      ..++.
T Consensus        81 ~~~~~   85 (178)
T 2dtj_A           81 QVQGN   85 (178)
T ss_dssp             TTTTT
T ss_pred             HHhcC
Confidence            44444

>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10

Probab=98.12  E-value=2.7e-06  Score=85.15  Aligned_cols=62  Identities=19%  Similarity=0.374  Sum_probs=57.9

Q ss_pred             CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhH
Q 020132          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV  293 (330)
Q Consensus       230 ~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~  293 (330)
                      ..+++|+..+|+++|++.|.+|.+.+|+.+++|+.|+++||+|+||+|  |+.+|||+|++++.
T Consensus       330 ~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~s--se~sis~~v~~~~~  391 (510)
T 2cdq_A          330 SILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKL  391 (510)
T ss_dssp             CCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGG
T ss_pred             cccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEe--CCCeEEEEEechHh
Confidence            358999999999999999999999999999999999999999999985  59999999998874

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=98.00  E-value=4.8e-06  Score=69.06  Aligned_cols=61  Identities=21%  Similarity=0.361  Sum_probs=53.4

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccE-EEEeccCCcceeeeecchhhHHHHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANV-IMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I-~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      ...+++|.+|+++||+++++|+.|+++|||| .|++.. ++...+++++.+|.++|++.||+.
T Consensus        70 ~~~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~~d~~~A~~~L~~~  131 (144)
T 2f06_A           70 NITDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSNMDKCIEVLKEK  131 (144)
T ss_dssp             EEEEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHT
T ss_pred             eeeeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEeCCHHHHHHHHHHc
Confidence            3447888899999999999999999999999 566642 678899999999999999999985

>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*

Probab=97.82  E-value=2.5e-06  Score=84.14  Aligned_cols=62  Identities=21%  Similarity=0.273  Sum_probs=57.3

Q ss_pred             CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhH
Q 020132          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEV  293 (330)
Q Consensus       230 ~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~  293 (330)
                      ..+++|+.++|+++|++.|.+|...+|+.+++|+.|++++|+|+||+|  |+.+|||++++++.
T Consensus       297 ~~v~gIa~~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~s--s~~sis~~v~~~~~  358 (449)
T 2j0w_A          297 PLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT--SEVSVALTLDTTGS  358 (449)
T ss_dssp             CSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEE--ETTEEEEEECCCCC
T ss_pred             cccccceeeCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEe--CCCeEEEEEecccc
Confidence            468999999999999999999999999999999999999999999995  58999999998653

>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}

Probab=97.02  E-value=0.00031  Score=69.09  Aligned_cols=79  Identities=13%  Similarity=0.263  Sum_probs=67.4

Q ss_pred             CcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHHhcc
Q 020132          231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREALNA  310 (330)
Q Consensus       231 ~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~~~~  310 (330)
                      .+++|+..+|+++|++.|.+|.+.+|+.+++|+.|++++|+|+||+++  +.+|||++++++..+.++.+.+.+..++..
T Consensus       288 ~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~--~~~is~~V~~~d~~~~~~~~~~el~~~~~~  365 (446)
T 3tvi_A          288 TITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSG--VDSVSLVIEDCKLDGKCDKIIEEIKKQCNP  365 (446)
T ss_dssp             CCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEE--TTEEEEEEEHHHHTTTHHHHHHHHHHHSCC
T ss_pred             ceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecC--CCEEEEEEecchHHHHHHHHHHHHHHhcCC
Confidence            689999999999999999999999999999999999999999999854  789999999999875555555556555543


Q ss_pred             C
Q 020132          311 G  311 (330)
Q Consensus       311 ~  311 (330)
                      .
T Consensus       366 ~  366 (446)
T 3tvi_A          366 D  366 (446)
T ss_dssp             S
T ss_pred             C
Confidence            3

>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11

Probab=95.83  E-value=0.0089  Score=48.97  Aligned_cols=50  Identities=10%  Similarity=0.122  Sum_probs=39.8

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCC-cce-eeeecchhhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASS-EHS-VCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~s-e~s-IS~vv~~~d~~~av~~Lh~  302 (330)
                      +.+.||.++++|+.|+++||||++|+|+.+ +.. ++|.  ..|.+++.+.|++
T Consensus        13 v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~--~~d~~~a~~~L~~   64 (144)
T 2f06_A           13 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI--VSDPDKAYKALKD   64 (144)
T ss_dssp             ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE--ESCHHHHHHHHHH
T ss_pred             ecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEE--eCCHHHHHHHHHH
Confidence            678899999999999999999999998643 323 4455  4677888888775

>1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8

Probab=94.68  E-value=0.082  Score=43.27  Aligned_cols=67  Identities=10%  Similarity=0.183  Sum_probs=56.2

Q ss_pred             cceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHH
Q 020132          234 GFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       234 ~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      ++........|+|.|..-.+..|+++.+-+.|+++||.+..||  +-.+.- ++|++++.++|+++|.+.
T Consensus        55 ~~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif~iS--ty~tD~-IlVp~~~~~~Ai~aL~~~  121 (134)
T 1zhv_A           55 DVRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVS--TFDGDH-LLVRSNDLEKTADLLANA  121 (134)
T ss_dssp             TSEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEE--CSSCEE-EEEEGGGHHHHHHHHHHT
T ss_pred             CCccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeEEEE--eccccE-EEEeHHHHHHHHHHHHHc
Confidence            3466778889999887566788999999999999999999998  434444 778999999999999875

>1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9

Probab=92.73  E-value=0.15  Score=41.60  Aligned_cols=64  Identities=14%  Similarity=0.173  Sum_probs=51.6

Q ss_pred             eeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHH
Q 020132          236 ATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       236 ~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      ........|++.|..-.+-.|+.+.+-+.|+++||.+..||  +-.+. -++|++++.++|+++|.+
T Consensus        66 ~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~iS--ty~tD-hIlVp~~~~~~A~~~L~~  129 (133)
T 1zvp_A           66 ESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANVIA--GYYHD-HIFVQKEKAQQALQALGE  129 (133)
T ss_dssp             CCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEE--CSSCE-EEEEEGGGHHHHHHHHTT
T ss_pred             ccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEEEE--ecccc-EEEEehhHHHHHHHHHHH
Confidence            44567888888886556788999999999999999999998  33444 477899999999999864

>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}

Probab=92.21  E-value=0.099  Score=45.13  Aligned_cols=84  Identities=19%  Similarity=0.190  Sum_probs=46.5

Q ss_pred             cceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCc----------ceeeeecchhhHHHHHHHHHHHHHHHh
Q 020132          239 DNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE----------HSVCFAVPEKEVKAVAEALESKFREAL  308 (330)
Q Consensus       239 ~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----------~sIS~vv~~~d~~~av~~Lh~~f~~~~  308 (330)
                      .+..+|+|.|.   +.||+++++.+.|+++|+||.-+.|.+..          ..+.+-++...-....+.|... ..++
T Consensus        91 ~~~~iltv~g~---DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~~~l~~~l~~~-a~~l  166 (195)
T 2nyi_A           91 TREYELYVEGP---DSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALSRV-EEEF  166 (195)
T ss_dssp             EEEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGHHHHHHHHHHH-HHHH
T ss_pred             CcEEEEEEEeC---CCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCccHHHHHHHHHH-HHHc
Confidence            35678999985   58999999999999999999999986432          2333333321112222222221 1222


Q ss_pred             -ccCcccccCCCCCCCCCc
Q 020132          309 -NAGRLSQHSSSSWPENGE  326 (330)
Q Consensus       309 -~~~~i~~~~~~~~~~~~~  326 (330)
                       -.-++++++..+.|++..
T Consensus       167 ~~di~~~~~~~~~~~~~~~  185 (195)
T 2nyi_A          167 GVDIDLEEVVEGEDSEEDD  185 (195)
T ss_dssp             TCEEEEEECC---------
T ss_pred             CeEEEEEECcccccCcccC
Confidence             233678888887777654

>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7

Probab=88.59  E-value=0.61  Score=34.36  Aligned_cols=59  Identities=20%  Similarity=0.309  Sum_probs=42.2

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC--c--ceeeeecch-hhHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--E--HSVCFAVPE-KEVKAVAEALES  302 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s--e--~sIS~vv~~-~d~~~av~~Lh~  302 (330)
                      ...|++.|.   +.||+++++.+.|+++|+||..+.|...  .  ..+.+-++. .+.+++.+.|.+
T Consensus         5 ~~~l~v~~~---DrpGila~vt~~la~~~~NI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L~~   68 (91)
T 1zpv_A            5 KAIITVVGK---DKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEA   68 (91)
T ss_dssp             EEEEEEEES---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHH
T ss_pred             eEEEEEEEC---CCCCHHHHHHHHHHHcCCCEEEEEeEEEcCEEEEEEEEEeCCCCCHHHHHHHHHH
Confidence            466788764   6899999999999999999999987542  2  333333343 456666666654

>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5

Probab=85.23  E-value=1  Score=38.22  Aligned_cols=60  Identities=20%  Similarity=0.310  Sum_probs=42.3

Q ss_pred             ceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC--cceeeeecchhhHHHHHHHHHHHH
Q 020132          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       240 nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s--e~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      +...|+|.|.   ++||+++++.+.|+++|+||.-+.|...  ...+.+.+....  .....|.+.|
T Consensus         5 ~~~~itv~~~---DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~--~~~~~l~~~L   66 (192)
T 1u8s_A            5 QHLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP--SNITRVETTL   66 (192)
T ss_dssp             EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH--HHHHHHHHHH
T ss_pred             cEEEEEEEcC---CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC--CCHHHHHHHH
Confidence            3567889874   6899999999999999999999988643  455555554332  2344444444

>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6

Probab=85.20  E-value=0.64  Score=39.24  Aligned_cols=52  Identities=17%  Similarity=0.296  Sum_probs=36.7

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeecchhhHHHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      ..+.||+++++...|+++|+||..++-+.++    ..+.++++.+  ++.++.|.+.+
T Consensus        11 veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d--~~~leql~kQL   66 (165)
T 2pc6_A           11 MENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGP--DEIVEQITKQL   66 (165)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEEC--HHHHHHHHHHH
T ss_pred             EeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEecc--HHHHHHHHHHh
Confidence            4578999999999999999999987765443    4567777633  33444444433

>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}

Probab=85.14  E-value=3.7  Score=34.71  Aligned_cols=79  Identities=14%  Similarity=0.182  Sum_probs=53.5

Q ss_pred             cceeeeccch--------hHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEe
Q 020132           36 TDFVVGHGEL--------WSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIAT  107 (330)
Q Consensus        36 ~~~v~~~GE~--------~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~  107 (330)
                      +..++++|.-        -++..+++.|++.|+....     ..++.|        |.+.+.+.++++++  ...+.|++
T Consensus         5 ~v~IistGdEll~G~i~DtN~~~l~~~L~~~G~~v~~-----~~iv~D--------d~~~I~~~l~~a~~--~~DlVitt   69 (172)
T 3kbq_A            5 NASVITVGNEILKGRTVNTNAAFIGNFLTYHGYQVRR-----GFVVMD--------DLDEIGWAFRVALE--VSDLVVSS   69 (172)
T ss_dssp             EEEEEEECHHHHTTSSCCHHHHHHHHHHHHTTCEEEE-----EEEECS--------CHHHHHHHHHHHHH--HCSEEEEE
T ss_pred             EEEEEEEcccccCCcEEeHHHHHHHHHHHHCCCEEEE-----EEEeCC--------CHHHHHHHHHHHHh--cCCEEEEc
Confidence            3456666643        3677899999999987543     233333        34556677777776  45778888


Q ss_pred             eeeecCCCCCcccccccCcchhHHHHHHHHhhc
Q 020132          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAH  140 (330)
Q Consensus       108 G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~  140 (330)
                      |-.+.+           -.|.+.-.+|.+++.+
T Consensus        70 GG~g~~-----------~~D~T~ea~a~~~~~~   91 (172)
T 3kbq_A           70 GGLGPT-----------FDDMTVEGFAKCIGQD   91 (172)
T ss_dssp             SCCSSS-----------TTCCHHHHHHHHHTCC
T ss_pred             CCCcCC-----------cccchHHHHHHHcCCC
Confidence            854432           2499999999999954

>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6

Probab=85.05  E-value=0.74  Score=38.78  Aligned_cols=51  Identities=12%  Similarity=0.279  Sum_probs=36.0

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeecchh--hHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEK--EVKAVAEALE  301 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv~~~--d~~~av~~Lh  301 (330)
                      ..+.||+++++...|++.|+||..++-+.++    ..+.+.+..+  .++++.+.|+
T Consensus        10 v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~   66 (164)
T 2f1f_A           10 LENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLH   66 (164)
T ss_dssp             EECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHH
T ss_pred             EeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHc
Confidence            4578999999999999999999887765443    4566777632  3344444443

>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A

Probab=82.16  E-value=2.3  Score=30.64  Aligned_cols=56  Identities=14%  Similarity=0.232  Sum_probs=37.0

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCc--ceeeeecch---hhHHHHHHHH
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSE--HSVCFAVPE---KEVKAVAEAL  300 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se--~sIS~vv~~---~d~~~av~~L  300 (330)
                      ..|.+.   ..+.||+++++.+.|++.|+||..+.+....  ..+.+.+.-   .+..++++.|
T Consensus         6 ~~l~v~---~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~~~~~~i~v~~~~~~~l~~l~~~L   66 (88)
T 2ko1_A            6 AGIRIV---GEDKNGMTNQITGVISKFDTNIRTIVLNAKDGIFTCNLMIFVKNTDKLTTLMDKL   66 (88)
T ss_dssp             EEEEEE---EECCTTHHHHHHHHHTTSSSCEEEEEEEECSSEEEEEEEEEESSHHHHHHHHHHH
T ss_pred             EEEEEE---EECCCcHHHHHHHHHHHCCCCeEEEEEEEcCCEEEEEEEEEECCHHHHHHHHHHH
Confidence            345555   3478999999999999999999988875432  234444433   3444444444

>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6

Probab=81.85  E-value=1.3  Score=38.37  Aligned_cols=52  Identities=19%  Similarity=0.267  Sum_probs=37.2

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeecchhhHHHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      +.+.||+++|+...|++.|+||..++-+.++    ..++++++..  +++++.|.+.+
T Consensus        36 VeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~--e~~ieqL~kQL   91 (193)
T 2fgc_A           36 VHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGD--DKTIEQIEKQA   91 (193)
T ss_dssp             EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEEC--TTHHHHHHHHH
T ss_pred             ECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECC--HHHHHHHHHHh
Confidence            5689999999999999999999988765332    4566777633  33444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d2j0wa1	292	c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli	8e-41
d2cdqa1	304	c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar	1e-37
d2hmfa1	302	c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja	4e-35
d2hmfa3	100	d.58.18.10 (A:304-403) Aspartokinase {Methanococcu	1e-19
d2hmfa2	67	d.58.18.10 (A:404-470) Aspartokinase {Methanococcu	5e-16
d2cdqa2	91	d.58.18.10 (A:329-419) Aspartokinase {Thale cress	6e-16
d2j0wa2	91	d.58.18.10 (A:295-385) Aspartokinase {Escherichia	1e-15
d2j0wa3	64	d.58.18.10 (A:386-449) Aspartokinase {Escherichia	8e-14
d2cdqa3	75	d.58.18.10 (A:420-494) Aspartokinase {Thale cress	5e-12
d2a1fa1	236	c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi	8e-11
d2ij9a1	219	c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog	1e-09
d1ybda1	236	c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri	4e-08
d2brxa1	225	c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc	2e-05
d1z9da1	238	c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptoc	3e-05

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score =  142 bits (358), Expect = 8e-41
 Identities = 66/194 (34%), Positives = 104/194 (53%), Gaps = 6/194 (3%)

Query: 32  TESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKR 91
           + + TD +V HGEL S  +   ++R+  +  +W D R+V+  N           + +E  
Sbjct: 105 SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELA 164

Query: 92  LEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGV 151
             +   +     +I  GFI S      TTL R GSD++AA++   L A +V IWTDV G+
Sbjct: 165 ALQLLPRLNEGLVITQGFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGI 224

Query: 152 YSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPG 211
           Y+ DPR VS A  +  +++ EA EM+ FGA VLHP T++P +R DIP+ + +  +    G
Sbjct: 225 YTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGG 284

Query: 212 IMICRPPVDENEDE 225
            ++C      N+ E
Sbjct: 285 TLVC------NKTE 292

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  134 bits (337), Expect = 1e-37
 Identities = 55/183 (30%), Positives = 94/183 (51%), Gaps = 3/183 (1%)

Query: 37  DFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIV---NPTSSNQVDPDFSESEKRLE 93
           D++V  GE  S ++ AA +   G+  +  D  E+  +   + T+ + ++  +    KRL 
Sbjct: 117 DYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLY 176

Query: 94  KWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYS 153
             +   P+  I+             TTL R GSD +A  +G  L   ++ +W DVDGV +
Sbjct: 177 DDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLT 236

Query: 154 ADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIM 213
            DP     A  +  L++ EA E++YFGA VLHP+++ P    +IP+ ++N +N   PG +
Sbjct: 237 CDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTI 296

Query: 214 ICR 216
           I +
Sbjct: 297 ITK 299

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score =  127 bits (320), Expect = 4e-35
 Identities = 75/214 (35%), Positives = 109/214 (50%), Gaps = 3/214 (1%)

Query: 3   QVRNYVSELSYEFIRSTYNFLSNVDS-GHATESFTDFVVGHGELWSAQMLAAVVRKNGID 61
           +++  V ++    I      L  V   G  T    D+++  GE  S+ +L+  +R  G  
Sbjct: 87  EIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEK 146

Query: 62  CKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTL 121
              ++  E  I+   +         E ++RL     +      + TGFI +T +   TTL
Sbjct: 147 SIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEG--IIPVVTGFIGTTEEGYITTL 204

Query: 122 KRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA 181
            R GSD+SAA++G  L A  + IWTDV GVY+ DPR V  A  +  LSY EA E++YFGA
Sbjct: 205 GRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGA 264

Query: 182 NVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMIC 215
            VLHPRTI P M   IPI+++N F     G +I 
Sbjct: 265 KVLHPRTIEPAMEKGIPILVKNTFEPESEGTLIT 298

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 100

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 80.2 bits (198), Expect = 1e-19
 Identities = 37/88 (42%), Positives = 54/88 (61%)

Query: 229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAV 288
           DS VK  +TI N+AL+N+ G GM GV GTA  IF A+ +   NVI+ISQ SSE ++   V
Sbjct: 3   DSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVV 62

Query: 289 PEKEVKAVAEALESKFREALNAGRLSQH 316
            E++V    +AL+ +F +      L+ +
Sbjct: 63  SEEDVDKALKALKREFGDFGKKSFLNNN 90

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 67

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

 Score = 69.3 bits (170), Expect = 5e-16
 Identities = 27/65 (41%), Positives = 38/65 (58%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
            +++V G GM G  G A  IF AV + GAN+ MI+Q SSE ++ F + EK++      L 
Sbjct: 2   CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLH 61

Query: 302 SKFRE 306
            KF E
Sbjct: 62  EKFIE 66

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 69.8 bits (171), Expect = 6e-16
 Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 232 VKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEK 291
           +       N+ ++++  T M G  G    +F   +++G +V +++   SE S+   +   
Sbjct: 4   LTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPS 61

Query: 292 EVKAVAEALESKFREA 307
           ++ +     +      
Sbjct: 62  KLWSRELIQQELDHVV 77

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 91

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 69.1 bits (169), Expect = 1e-15
 Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 231 PVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPE 290
             +  A   N  L+ +    M    G    +FG +     +V +I+  +SE SV   +  
Sbjct: 4   LFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLIT--TSEVSVALTLDT 61

Query: 291 KEVKAVAEALESKFREA 307
               +  + L ++    
Sbjct: 62  TGSTSTGDTLLTQSLLM 78

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

 Score = 63.2 bits (154), Expect = 8e-14
 Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEAL 300
           LALV + G  ++   G    +FG ++    N+ MI   +S H++CF VP ++ + V + L
Sbjct: 1   LALVALIGNDLSKACGVGKEVFGVLEPF--NIRMICYGASSHNLCFLVPGEDAEQVVQKL 58

Query: 301 ESKFRE 306
            S   E
Sbjct: 59  HSNLFE 64

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 75

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 58.6 bits (142), Expect = 5e-12
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALE 301
           A++++ G  +          F  +   G NV MISQ +S+ ++ F V E E +   +AL 
Sbjct: 2   AIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALH 60

Query: 302 SKFREALNAGRLS 314
             F E+ +   L 
Sbjct: 61  KSFFESGDLSELL 73

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

 Score = 58.8 bits (141), Expect = 8e-11
 Identities = 27/111 (24%), Positives = 41/111 (36%), Gaps = 12/111 (10%)

Query: 114 PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEA 173
             +  T      +D +A + G  + A  V   T VDGVY  DP K  +A + + LSY E 
Sbjct: 129 IFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEV 188

Query: 174 WEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV---------PGIMIC 215
            +       V+          + +PI + N+               G  IC
Sbjct: 189 IDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC 236

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

 Score = 55.6 bits (133), Expect = 1e-09
 Identities = 35/175 (20%), Positives = 56/175 (32%), Gaps = 23/175 (13%)

Query: 39  VVGHGELWSAQMLAAVVRKNGID----CKWMDTREVLIVNPTSSNQVDPDFSESEKRLEK 94
           VVG G+L  A+      R+ G               L      S             +E 
Sbjct: 38  VVGGGKL--AREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFMEA 95

Query: 95  WFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSA 154
                    ++  G                 +D +AA++   ++A      T+VDGVYSA
Sbjct: 96  EELSKLYRVVVMGGTFP-----------GHTTDATAALLAEFIKADVFINATNVDGVYSA 144

Query: 155 DPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPV------MRYDIPIVIRN 203
           DP+  + AV    LS Q+  E+    +       +I +       R  I   +  
Sbjct: 145 DPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL 199

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

 Score = 51.2 bits (121), Expect = 4e-08
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 3/97 (3%)

Query: 113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQE 172
                 T      +D +AA+ GA +    +   T+VDGVY+ADP+K   A    T+++ E
Sbjct: 127 VIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDE 186

Query: 173 AWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSV 209
           A         V+            + IV+  I     
Sbjct: 187 ALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGS 220

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 6/86 (6%)

Query: 127 DFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHP 186
           D  AA++   L+A  + + T+VDGVY+ADP+K   A  ++ +  +E  E+   G      
Sbjct: 121 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGS 180

Query: 187 RTII------PVMRYDIPIVIRNIFN 206
            ++I       + R  I  ++    +
Sbjct: 181 SSVIDPLAAKIIARSGIKTIVIGKED 206

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} Length = 238

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 30/182 (16%), Positives = 56/182 (30%), Gaps = 4/182 (2%)

Query: 26  VDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDF 85
             SG                 +A      V+ +           +++ +      VD   
Sbjct: 40  HVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRV 99

Query: 86  SESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIW 145
             +               +                     +D +AA+  A + A  + + 
Sbjct: 100 QTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMA 159

Query: 146 T-DVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNI 204
              VDGVY+ADP+K + AV    L++ E  +    G  ++        M  DI +V+ N+
Sbjct: 160 KNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIMDATASTLSMDNDIDLVVFNM 216

Query: 205 FN 206
             
Sbjct: 217 NE 218

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d2j0wa1	292	Aspartokinase {Escherichia coli [TaxId: 562]}	100.0
d2cdqa1	304	Aspartokinase {Thale cress (Arabidopsis thaliana)	100.0
d2hmfa1	302	Aspartokinase {Methanococcus jannaschii [TaxId: 21	100.0
d2brxa1	225	Uridylate kinase PyrH {Pyrococcus furiosus [TaxId:	99.82
d2akoa1	250	Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1	99.77
d2ij9a1	219	Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax	99.76
d2a1fa1	236	Uridylate kinase PyrH {Haemophilus influenzae [Tax	99.74
d2hmfa2	67	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.72
d2hmfa3	100	Aspartokinase {Methanococcus jannaschii [TaxId: 21	99.71
d1ybda1	236	Uridylate kinase PyrH {Neisseria meningitidis [Tax	99.67
d2cdqa3	75	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.62
d2j0wa3	64	Aspartokinase {Escherichia coli [TaxId: 562]}	99.58
d2bufa1	300	N-acetyl-l-glutamate kinase {Pseudomonas aeruginos	99.47
d1z9da1	238	Uridylate kinase PyrH {Streptococcus pyogenes [Tax	99.43
d2btya1	282	N-acetyl-l-glutamate kinase {Thermotoga maritima [	99.41
d2ap9a1	291	N-acetyl-l-glutamate kinase {Mycobacterium tubercu	99.4
d2cdqa2	91	Aspartokinase {Thale cress (Arabidopsis thaliana)	99.34
d2j0wa2	91	Aspartokinase {Escherichia coli [TaxId: 562]}	99.33
d1e19a_	313	Carbamate kinase {Archaeon Pyrococcus furiosus [Ta	99.16
d1b7ba_	307	Carbamate kinase {Enterococcus faecium [TaxId: 135	99.13
d1gs5a_	258	N-acetyl-l-glutamate kinase {Escherichia coli [Tax	98.08
d1zhva2	66	Hypothetical protein Atu0741 {Agrobacterium tumefa	95.43
d1u8sa1	86	putative transcriptional repressor VC2159 {Vibrio	95.24
d1zpva1	83	UPF0237 protein SP0238 {Streptococcus pneumoniae [	94.53
d2f06a2	70	Hypothetical protein BT0572 {Bacteroides thetaiota	94.24
d2f06a1	71	Hypothetical protein BT0572 {Bacteroides thetaiota	93.64
d2fgca2	78	Acetolactate synthase small subunit, IlvH {Thermot	92.13
d2pc6a2	77	Acetolactate synthase small subunit, IlvH {Nitroso	91.88
d2f1fa1	76	Acetolactate synthase small subunit, IlvH {Escheri	91.81
d1zvpa2	64	Hypothetical protein VC0802 {Vibrio cholerae [TaxI	91.76
d1y7pa2	77	Hypothetical protein AF1403, N-terminal domain {Ar	90.97
d1ygya3	78	Phosphoglycerate dehydrogenase, regulatory (C-term	87.73
d1sc6a3	84	Phosphoglycerate dehydrogenase, regulatory (C-term	86.15
d1u8sa2	93	putative transcriptional repressor VC2159 {Vibrio	84.68

>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.2e-49  Score=370.58  Aligned_cols=189  Identities=34%  Similarity=0.624  Sum_probs=170.8

Q ss_pred             CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHH-hhccCCCccEEEe
Q 020132           29 GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEK-WFSQSPSNTIIAT  107 (330)
Q Consensus        29 ~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~-~l~~~~~~VpVv~  107 (330)
                      .+.+++.+|.++|+||+||+++++.+|+++|+++.++|++++++ +++.+++..+++..+.+.... +.......|||++
T Consensus       102 ~~~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~i~-t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~i~Vv~  180 (292)
T d2j0wa1         102 LATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMR-TNDRFGRAEPDIAALAELAALQLLPRLNEGLVITQ  180 (292)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCB-BCSCTTSCCBCHHHHHHHHHHHTHHHHHHSEEEEE
T ss_pred             cccChHHHHHHHhhhHHHhHHHHHHHHHhcCCCccccchhheee-cCCccccccchhhhhhhhhhhhhhhhhcccccccc
Confidence            46788999999999999999999999999999999999999965 556677888888665443332 2221234689999


Q ss_pred             eeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhccccccccc
Q 020132          108 GFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR  187 (330)
Q Consensus       108 G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~  187 (330)
                      ||+|.+.+|.++|||||||||+|+++|.+|+|+++++|||||||||+||+.+++|++++++||+||.||+++|++||||+
T Consensus       181 GFig~~~~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taDP~~v~~A~~i~~lsy~EA~ela~~GakVlhp~  260 (292)
T d2j0wa1         181 GFIGSENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPA  260 (292)
T ss_dssp             SSEEECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTT
T ss_pred             cccccccCCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeechhhcCCCceEcceeCHHHHHHHHhCCccccCHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccceeeecccceEEeeeccccCceeEeeCCC
Q 020132          188 TIIPVMRYDIPIVIRNIFNLSVPGIMICRPP  218 (330)
Q Consensus       188 a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~  218 (330)
                      |++||++++||++|+|+++|+.+||.|+++.
T Consensus       261 ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~  291 (292)
T d2j0wa1         261 TLLPAVRSDIPVFVGSSKDPRAGGTLVCNKT  291 (292)
T ss_dssp             THHHHHHHTCCEEEEESSCTTSCCEEEESCC
T ss_pred             HHHHHHHcCCcEEEeeCCCCCCCCCeEecCC
Confidence            9999999999999999999999999998764

>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.9e-49  Score=372.87  Aligned_cols=200  Identities=29%  Similarity=0.492  Sum_probs=178.4

Q ss_pred             HHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHH
Q 020132           16 IRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEK   90 (330)
Q Consensus        16 i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~   90 (330)
                      +...++.|++++.     ++++++.+|+++|+||+||+++++++|+++|++|.+++++++++++++.+++++++...+..
T Consensus        91 ~~~~~~~l~~~l~~i~~~~~~s~~~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a~~~~~~~~~  170 (304)
T d2cdqa1          91 ILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPA  170 (304)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHH
T ss_pred             HHHHHHHHHHHHhhhccccccchhhHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccccccccchhh
Confidence            3344455555544     57889999999999999999999999999999999999999866777888888777655443


Q ss_pred             H----HHHhhccCCCccEEEeeeeecC-CCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhh
Q 020132           91 R----LEKWFSQSPSNTIIATGFIAST-PDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVIL  165 (330)
Q Consensus        91 ~----i~~~l~~~~~~VpVv~G~i~~~-~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i  165 (330)
                      .    +..+++  .+.|||++||+|.+ .+|.++||||||||++|+++|.+|+|+++.||||||||||+||+.+++|++|
T Consensus       171 ~~~~~~~~~~~--~~~v~vv~Gfig~~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~v~~a~~i  248 (304)
T d2cdqa1         171 VAKRLYDDWMH--DPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPV  248 (304)
T ss_dssp             HHHHHHHHHHH--SCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBC
T ss_pred             hHHHHhhhhhc--cCcEEEeeccccccCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccccCCceEc
Confidence            3    344455  67899999999997 6899999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeCC
Q 020132          166 RTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRP  217 (330)
Q Consensus       166 ~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~  217 (330)
                      ++|||+||.||+++|++|+||+|++||++++||++|+|+++|+.+||.|+++
T Consensus       249 ~~lsy~EA~ela~~GakvlHp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~  300 (304)
T d2cdqa1         249 PYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKT  300 (304)
T ss_dssp             CEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESC
T ss_pred             CccCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEEeCC
Confidence            9999999999999999999999999999999999999999999999999865

>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=1.4e-48  Score=366.72  Aligned_cols=202  Identities=37%  Similarity=0.547  Sum_probs=188.6

Q ss_pred             HHHhhhcccccCCC-----CCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhH
Q 020132           15 FIRSTYNFLSNVDS-----GHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESE   89 (330)
Q Consensus        15 ~i~~~~~~l~~~~~-----~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~   89 (330)
                      .++..++.|++++.     ++++++.+|.++|+||+||+++|+.+|+++|+++.+++++++++.+++.++++.++...+.
T Consensus        95 ~i~~~l~~L~~~l~~~~~~~e~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~  174 (302)
T d2hmfa1          95 IIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVK  174 (302)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEECSCTTSCCEEEECHH
T ss_pred             HHHHHHHHHHHHHHHhhhcccCCHHHHHHHhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccCCccchhhhhhhhhH
Confidence            35566677777765     5778999999999999999999999999999999999999997788888888888887888


Q ss_pred             HHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is  169 (330)
                      +++.+++.  .+.|||+|||+|.+.+|.++||||||||++|+++|.+|+|+++++||||+|||++||+.+|+|+++++++
T Consensus       175 ~~l~~~~~--~~~v~Vv~GFig~~~~G~~ttLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~~~dP~~~~~a~~~~~~~  252 (302)
T d2hmfa1         175 ERLLPLLK--EGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLS  252 (302)
T ss_dssp             HHHHHHHH--TTCEEEEESSEEECTTCCEEECCTTTHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEE
T ss_pred             HHHHHHHh--cCCeEEeecccccCCCCCEEEEeccCcccHHHHHHHHhccHHHHHHhccchhccchhhcCCCceEecccC
Confidence            88998887  7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhhcccccccccccceeeecccceEEeeeccccCceeEeeCCC
Q 020132          170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNLSVPGIMICRPP  218 (330)
Q Consensus       170 ~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~~~~GT~I~~~~  218 (330)
                      |+||.||+++|+++|||+|+.||+++|||++|+|.++|+.+||.|+++.
T Consensus       253 y~ea~eLa~~g~~v~h~~~~~~~~~~~i~i~v~~~~~~~~~gT~i~~~~  301 (302)
T d2hmfa1         253 YIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDM  301 (302)
T ss_dssp             HHHHHHHHHTTCTTSCGGGHHHHHHTTCCEEEEETTSTTSCCEEEESCC
T ss_pred             HHHHHHHHhCCCcccCHHHHHHHHHcCCCEEEeeCCCCCCCCCEEcCCC
Confidence            9999999999999999999999999999999999999999999998753

>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.82  E-value=1.2e-21  Score=174.82  Aligned_cols=149  Identities=25%  Similarity=0.286  Sum_probs=113.5

Q ss_pred             ccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeec
Q 020132           33 ESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (330)
Q Consensus        33 ~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (330)
                      +...+.+...++++++.++...|.+.|+++..                  .++    ....++++  .+.|||+.+..+ 
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------------------~~~----~~~~~~l~--~~~ipv~~~~~~-  116 (225)
T d2brxa1          62 ETFKDFIGIQITRANAMLLIAALREKAYPVVV------------------EDF----WEAWKAVQ--LKKIPVMGGTHP-  116 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGBCSSCB------------------CSH----HHHHHHHH--TTCBCEECCCST-
T ss_pred             hHHHHHhhhhHHHHHHHHHHHHHHhhhccccc------------------ccH----HHHHHHHH--hcccccccCCCC-
Confidence            33445555567777788888888877776421                  122    23344565  678999865311 


Q ss_pred             CCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhccc-----c-cccc
Q 020132          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA-----N-VLHP  186 (330)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~-----~-v~~p  186 (330)
                              +  +.+|++|+++|.+|+|+++++|||||||||+||+++|+|+++++++++|+.+++..|.     + ++++
T Consensus       117 --------~--~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~dP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~~k  186 (225)
T d2brxa1         117 --------G--HTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDP  186 (225)
T ss_dssp             --------T--CCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCH
T ss_pred             --------C--cchhHHHHHHHHHhCchhhhhhhhhhhhhhcccccccccccceEEecchHHHHhccCccccCCCCcccH
Confidence                    1  2359999999999999999999999999999999999999999999999999987553     2 4555


Q ss_pred             cccceeeecccceEEeeeccc---------cCceeEeeC
Q 020132          187 RTIIPVMRYDIPIVIRNIFNL---------SVPGIMICR  216 (330)
Q Consensus       187 ~a~~~a~~~~i~v~i~~~~~~---------~~~GT~I~~  216 (330)
                      .|++.|.++|+|++|.|+++|         +..||+|.|
T Consensus       187 ~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P  225 (225)
T d2brxa1         187 LAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP  225 (225)
T ss_dssp             HHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred             HHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence            688999999999999999876         467999865

>d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Glutamate 5-kinase
species: Campylobacter jejuni [TaxId: 197]

Probab=99.77  E-value=1.5e-20  Score=170.03  Aligned_cols=157  Identities=12%  Similarity=0.164  Sum_probs=117.9

Q ss_pred             eeeeccchhHHHHHHHHHHhcCCccccccceeEEEECCCCCCCCCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCC
Q 020132           38 FVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLIVNPTSSNQVDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNI  117 (330)
Q Consensus        38 ~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~  117 (330)
                      .+.+.|+..++.++...|...|+.+...      +.+...+. ....+....+.+..+++  .+.+||+.+.    ..+.
T Consensus        66 ~~~~~g~~~~~~~~~~~l~~~~~~~~~~------l~~~~~~~-~~~~~~~~~~~~~~~l~--~~~ipv~~~~----~~~~  132 (250)
T d2akoa1          66 VLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGKDFD-SRKATKHAKNAIDMMIN--LGILPIINEN----DATA  132 (250)
T ss_dssp             HHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTGGGG-CHHHHHHHHHHHHHHHH--TTCEEEEEEC----TTTC
T ss_pred             hhhcccchhHHHHHHHHhhhcccccccc------cccccchh-hhhhhhhhhHHHHHHHH--hCcccccccC----cccc
Confidence            3556788888889999999999987432      22322111 01111223466777887  7899998664    3355


Q ss_pred             cccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhh--HHhhhhhh-----cccccccc--cc
Q 020132          118 PTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSY--QEAWEMSY-----FGANVLHP--RT  188 (330)
Q Consensus       118 ~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~--~e~~~l~~-----~g~~v~~p--~a  188 (330)
                      +...+++++|++|+++|..++|++++++||||||||+||+++|+|++++++++  ++..++..     .|.++|.+  +|
T Consensus       133 ~~~~~~~~~D~~A~~lA~~~~a~~li~~tdVdGVyd~dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~~Kl~a  212 (250)
T d2akoa1         133 IEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKA  212 (250)
T ss_dssp             CHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHhcccceeeeccCCCceeeCCCcccccccchhhccccchHHhhhhcccCCCCCCCchHHHHHH
Confidence            66678899999999999999999999999999999999999999999999998  44444442     34678888  47


Q ss_pred             cceeeecccceEEeeeccc
Q 020132          189 IIPVMRYDIPIVIRNIFNL  207 (330)
Q Consensus       189 ~~~a~~~~i~v~i~~~~~~  207 (330)
                      +..|.++|++++|.|+++|
T Consensus       213 a~~~~~~gi~v~I~nG~~~  231 (250)
T d2akoa1         213 AKFLLEHNKKMFLASGFDL  231 (250)
T ss_dssp             HHHHHHTTCEEEEEESSSC
T ss_pred             HHHHHHCCCCEEEecCCCc
Confidence            8889999999999998765

>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.76  E-value=7.2e-20  Score=162.32  Aligned_cols=179  Identities=25%  Similarity=0.251  Sum_probs=122.3

Q ss_pred             HHHHhhhcccccCCCCCccccccceeeeccchhHHHHHHHHHHhcCCccccccceeEEE--------E-CCCCCCC-CCC
Q 020132           14 EFIRSTYNFLSNVDSGHATESFTDFVVGHGELWSAQMLAAVVRKNGIDCKWMDTREVLI--------V-NPTSSNQ-VDP   83 (330)
Q Consensus        14 ~~i~~~~~~l~~~~~~~~~~~~~~~v~~~GE~~sa~~~~~~L~~~Gi~a~~l~~~~~~~--------~-~~~~~g~-~~~   83 (330)
                      ++++...+.++++.+    ......|+|.|..  ++-+....+..|.+....+......        . .-...+. ...
T Consensus        17 ~~i~~la~~i~~l~~----~~~~vIVvsgG~~--ar~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   90 (219)
T d2ij9a1          17 EKIREFAKTIESVAQ----QNQVFVVVGGGKL--AREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPV   90 (219)
T ss_dssp             HHHHHHHHHHHHHHH----HSEEEEEECCHHH--HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCTTBCSSCCS
T ss_pred             HHHHHHHHHHHHHHc----CCcEEEEECCCcc--ccchhhhhhhcCccHHHHHHHHHHHHHhhHHHHHHHhhhccchhhH
Confidence            556666666666543    2345577888876  5555555555555433322111000        0 0011111 222


Q ss_pred             CchhhHHHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhh
Q 020132           84 DFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAV  163 (330)
Q Consensus        84 ~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~  163 (330)
                      ++    ...+++++  .+.+||..|.+.           ++.+|++|+++|..++|+.++++||||||||+||+.+|+|+
T Consensus        91 ~~----~~~~~l~~--~~~v~v~~~~~~-----------~~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~~~~~A~  153 (219)
T d2ij9a1          91 DF----MEAEELSK--LYRVVVMGGTFP-----------GHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAV  153 (219)
T ss_dssp             SH----HHHHHHHT--TCSEEEECCCSS-----------SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCC
T ss_pred             HH----HHHHHHhc--cCCceEECCCCC-----------CCcccHHHHHHHHHcCchHhhhccCcccccccccccCcccc
Confidence            33    55566666  678888766432           13459999999999999999999999999999999999999


Q ss_pred             hhhhhhhHHhhhhhhccc------ccccccccceeeecccceEEeeecc--------ccCceeEee
Q 020132          164 ILRTLSYQEAWEMSYFGA------NVLHPRTIIPVMRYDIPIVIRNIFN--------LSVPGIMIC  215 (330)
Q Consensus       164 ~i~~is~~e~~~l~~~g~------~v~~p~a~~~a~~~~i~v~i~~~~~--------~~~~GT~I~  215 (330)
                      ++++++++|+.+++..+.      .++++.|++.|.++|+|++|.|+..        ++..||.|+
T Consensus       154 ~i~~is~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~~~ni~~~l~Ge~vGT~Is  219 (219)
T d2ij9a1         154 KYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA  219 (219)
T ss_dssp             BCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECCHHHHHHHHTTCCCSEEEC
T ss_pred             cccccCHHHHHHHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCCCcHHHHHHCCCCCceEeC
Confidence            999999999998875432      2688899999999999999999842        245699874

>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Haemophilus influenzae [TaxId: 727]

Probab=99.74  E-value=3.6e-19  Score=158.75  Aligned_cols=112  Identities=26%  Similarity=0.301  Sum_probs=87.1

Q ss_pred             HHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is  169 (330)
                      ..+...++  .+.++++.+.         ..+.+|++|.+|+++|.+++|+.++++||||||||+||+++|+|+++++++
T Consensus       116 ~~~~~~~~--~~~~~~~~~~---------~~~~~~dnD~laa~vA~~~~Ad~lii~TDVdGvyt~dP~~~~~A~~i~~i~  184 (236)
T d2a1fa1         116 SEAIKMLR--EKRVVIFSAG---------TGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLS  184 (236)
T ss_dssp             HHHHHHHH--TTCEEEEEST---------TSCSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEEC
T ss_pred             hhhhhhhh--hccccccccc---------ccCCCCCCcHHHHHHHHHhchhHHHHhhccccccccccccccccccccccc
Confidence            44455554  5666665432         123457789999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhhcccccccccccceeeecccceEEeeeccc---------cCceeEee
Q 020132          170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (330)
Q Consensus       170 ~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~---------~~~GT~I~  215 (330)
                      ++|+.+   .|+++++++|++.|+++|||++|+|+++|         +..||+|.
T Consensus       185 ~~e~l~---~G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI~  236 (236)
T d2a1fa1         185 YAEVID---KELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTIC  236 (236)
T ss_dssp             HHHHHH---TTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEEC
T ss_pred             HHHHHh---cCCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCcceeC
Confidence            998866   48999999999999999999999999876         35799883

>d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.72  E-value=1.6e-18  Score=125.63  Aligned_cols=66  Identities=41%  Similarity=0.657  Sum_probs=64.4

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE  306 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~  306 (330)
                      +|+|+++|.+|+++||+++|+|++|+++||||.||+|++|+++|||+|+++|.++|+++||++|+.
T Consensus         1 Va~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~~~Av~~Lh~~F~~   66 (67)
T d2hmfa2           1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIE   66 (67)
T ss_dssp             EEEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHHHHTT
T ss_pred             CEEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEEeHHHHHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999999999999999999999999999975

>d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Methanococcus jannaschii [TaxId: 2190]

Probab=99.71  E-value=2.1e-18  Score=134.90  Aligned_cols=86  Identities=43%  Similarity=0.606  Sum_probs=76.8

Q ss_pred             cCCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHHh
Q 020132          229 DSPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (330)
Q Consensus       229 ~~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~~  308 (330)
                      ...+++|++.+|+++|+++|.+|++.||+++|+|++|+++||||+||+|++|+++|||+|+++|.++|+++||+.|+...
T Consensus         3 ~~~vk~I~~~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~Isf~V~~~d~~~a~~~L~~~f~~~~   82 (100)
T d2hmfa3           3 DSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDFG   82 (100)
T ss_dssp             SSSCCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEECSTTHHHHHHHHHHHHCCC-
T ss_pred             CCceeEEEecCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceEEEEEeHHHHHHHHHHHHHHHHhhc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999997655


Q ss_pred             ccCccc
Q 020132          309 NAGRLS  314 (330)
Q Consensus       309 ~~~~i~  314 (330)
                      ..+.+.
T Consensus        83 ~~~~~~   88 (100)
T d2hmfa3          83 KKSFLN   88 (100)
T ss_dssp             ----CS
T ss_pred             cccccc
Confidence            554443

>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Neisseria meningitidis [TaxId: 487]

Probab=99.67  E-value=2.3e-17  Score=146.30  Aligned_cols=112  Identities=23%  Similarity=0.278  Sum_probs=93.5

Q ss_pred             HHHHHhhccCCCccEEEeeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLS  169 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is  169 (330)
                      ..+...++  .+.++++...         ..+.+|++|.+|+++|..++|+.++++||||||||+||+.+++|+++++++
T Consensus       115 ~~~~~~~~--~~~~~~~~~~---------~~~~~gdnD~laa~vA~~~~ad~liilTdVdGvy~~dP~~~~~a~~~~~~~  183 (236)
T d1ybda1         115 PKAIQYLE--EGKVVIFAAG---------TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETIT  183 (236)
T ss_dssp             HHHHHHHH--TTCEEEEEST---------TSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEE
T ss_pred             HHHHhhhc--cCceeccccc---------cccccccchHHHHHHHHHhCccceeeccCccchhhccccccccceeecccc
Confidence            44555555  4566665321         123457789999999999999999999999999999999999999999999


Q ss_pred             hHHhhhhhhcccccccccccceeeecccceEEeeeccc---------cCceeEee
Q 020132          170 YQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRNIFNL---------SVPGIMIC  215 (330)
Q Consensus       170 ~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~~~~~---------~~~GT~I~  215 (330)
                      ++|+.+   .|.++|+++|++.|+++|||++|.|+++|         +..||+|.
T Consensus       184 ~~e~~~---~g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh  235 (236)
T d1ybda1         184 FDEALL---KNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH  235 (236)
T ss_dssp             HHHHHH---TTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred             HHHHHh---cCchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence            998764   48899999999999999999999999876         45799884

>d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.62  E-value=3.7e-17  Score=120.91  Aligned_cols=67  Identities=28%  Similarity=0.360  Sum_probs=63.8

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHHHh
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFREAL  308 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~~~  308 (330)
                      .|+|++|| +|...||+++|+|++|+++||||.||+|++|+++|||+|+++|.++|+++||+.|+.+.
T Consensus         1 ~a~IsvVG-~~~~~~Giaarif~aL~~~~InV~mIsqg~se~~Is~vV~~~d~~~Av~~Lh~~f~~~~   67 (75)
T d2cdqa3           1 RAIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFESG   67 (75)
T ss_dssp             EEEEEEEE-CGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHHSSC
T ss_pred             CcEEEEEC-CCCCChhHHHHHHHHHHHcCCceEEEEcCccceEEEEEEeHHHHHHHHHHHHHHHhcCC
Confidence            37999999 89999999999999999999999999999999999999999999999999999997654

>d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=9.1e-16  Score=109.92  Aligned_cols=63  Identities=32%  Similarity=0.591  Sum_probs=59.5

Q ss_pred             eeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHH
Q 020132          241 LALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFR  305 (330)
Q Consensus       241 ia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~  305 (330)
                      +|+|+++|.+|+++||+.+|+|++|++  +||.|++|++|+++|||+|+++|.++|+++||++|+
T Consensus         1 la~IsvvG~gm~~~~gi~arif~~L~~--~nI~~i~~~~Se~~is~vV~~~d~~~Av~aLh~~Ff   63 (64)
T d2j0wa3           1 LALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLF   63 (64)
T ss_dssp             EEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCcccCccHHHHHHHHHhh--CCCeEEEEEcCccEEEEEEcHHHHHHHHHHHHHHhc
Confidence            589999999999999999999999976  567789999999999999999999999999999997

>d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.47  E-value=1.4e-14  Score=133.84  Aligned_cols=154  Identities=12%  Similarity=0.170  Sum_probs=119.2

Q ss_pred             HHHHHHHHHhcCCccccccceeEEEECCCC-----------------CCC----CCCCchhhHHHHHHhhccCCCccEEE
Q 020132           48 AQMLAAVVRKNGIDCKWMDTREVLIVNPTS-----------------SNQ----VDPDFSESEKRLEKWFSQSPSNTIIA  106 (330)
Q Consensus        48 a~~~~~~L~~~Gi~a~~l~~~~~~~~~~~~-----------------~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv  106 (330)
                      ...+.+.|.+.|+++.++.+.+...+...+                 +|.    ..+|.    +.++.+++  .+.|||+
T Consensus       108 n~~lv~~l~~~g~~a~~l~~~d~~~i~~~~~~~~~~~~~~~~~~~id~g~~G~v~~v~~----~~i~~ll~--~g~Ipvi  181 (300)
T d2bufa1         108 NKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNV----GLLNMLVK--GDFIPVI  181 (300)
T ss_dssp             HHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECH----HHHHHHHH--TTCEEEE
T ss_pred             HHHHHHHHHhcCCcccccCCCccceEEeecccccccCcccccccccccCcccceeecch----hHHHHHhc--CCCeEEe
Confidence            456678899999999998776532111100                 111    11333    77888888  8999999


Q ss_pred             eeeeecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhccc--ccc
Q 020132          107 TGFIASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGA--NVL  184 (330)
Q Consensus       107 ~G~i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~--~v~  184 (330)
                      ++. +.+.+|+..++   ++|.+|+.+|.+|+|++|+|+|||+|||+.+      .+++++++.+++.++...|.  ++|
T Consensus       182 s~~-~~~~~G~~~ni---n~D~~Aa~lA~~L~AdkLI~Ltdv~Gv~~~~------g~~~~~l~~~~~~~li~~~~i~gGM  251 (300)
T d2bufa1         182 API-GVGSNGESYNI---NADLVAGKVAEALKAEKLMLLTNIAGLMDKQ------GQVLTGLSTEQVNELIADGTIYGGM  251 (300)
T ss_dssp             EEE-EECTTSCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSCCBCTT------SCBCCEECHHHHHHHHHTTCSCTTH
T ss_pred             ccc-ccCcccchhcc---cHHHHHHHHHHHcCCCeEEEEcCCCccccCC------CcchhhccHHHHHHHHHcCCcCchH
Confidence            985 88999999887   4899999999999999999999999999754      35688999999999987663  689


Q ss_pred             ccc--ccceeeecccc-eEEeeeccc----------cCceeEeeCC
Q 020132          185 HPR--TIIPVMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (330)
Q Consensus       185 ~p~--a~~~a~~~~i~-v~i~~~~~~----------~~~GT~I~~~  217 (330)
                      .|+  ++..|.++|++ ++|.|+..|          +..||.|+++
T Consensus       252 ~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~~~  297 (300)
T d2bufa1         252 LPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR  297 (300)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHcCCCCceeEEecC
Confidence            884  66777889997 999998644          3469999764

>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: PyrH-like
domain: Uridylate kinase PyrH
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.43  E-value=4.1e-14  Score=124.44  Aligned_cols=90  Identities=23%  Similarity=0.286  Sum_probs=81.3

Q ss_pred             cCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcccccccccccceeeecccceEEee
Q 020132          124 DGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPRTIIPVMRYDIPIVIRN  203 (330)
Q Consensus       124 ggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~a~~~a~~~~i~v~i~~  203 (330)
                      ++.|..++.+|..++|+.++++|||||+|++||+..++|++++++++.|...   .|..+|++.|++.|.++|||++|.|
T Consensus       139 ~~~d~~~~~~a~~~~a~~li~~tdVdGvy~~~P~~~~~a~~~~~~~~~~~~~---~g~~~~k~~Aa~~a~~~gi~v~I~n  215 (238)
T d1z9da1         139 STDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFN  215 (238)
T ss_dssp             CHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEE
T ss_pred             CCchHHHHHHHHHhhhhhhcccccccceecccccccccchhhccccccchhc---cCcchhHHHHHHHHHHCCCcEEEEe
Confidence            4568889999999999999999999999999999999999999999987654   4889999999999999999999999


Q ss_pred             eccc---------cCceeEeeC
Q 020132          204 IFNL---------SVPGIMICR  216 (330)
Q Consensus       204 ~~~~---------~~~GT~I~~  216 (330)
                      +.+|         +..||.|+.
T Consensus       216 G~~p~~i~~~l~Ge~~GTlIt~  237 (238)
T d1z9da1         216 MNEAGNIQRVVFGEHIGTTVSN  237 (238)
T ss_dssp             TTSTTHHHHHHTTCCCSEEEEC
T ss_pred             CCCcchHHHHHCCCCCceEecc
Confidence            9877         567999975

>d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.41  E-value=6.4e-14  Score=128.17  Aligned_cols=155  Identities=17%  Similarity=0.138  Sum_probs=118.8

Q ss_pred             hHHHHHHHHHHhcCCccccccceeEEEE------CCCCC---CC-CCCCchhhHHHHHHhhccCCCccEEEeeeeecCCC
Q 020132           46 WSAQMLAAVVRKNGIDCKWMDTREVLIV------NPTSS---NQ-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPD  115 (330)
Q Consensus        46 ~sa~~~~~~L~~~Gi~a~~l~~~~~~~~------~~~~~---g~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~  115 (330)
                      +....+...|.+.|++++.+.+.+....      +..++   |. ..+|.    +.++.+++  .+.|||++++ +.+..
T Consensus       101 ~~n~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~d~~~~g~~~~v~~----~~i~~lL~--~~~ipvi~~~-~~~~~  173 (282)
T d2btya1         101 KINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNP----EILHALIE--NDYIPVIAPV-GIGED  173 (282)
T ss_dssp             THHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECT----HHHHHHHH--TTCEEEEESE-EECSS
T ss_pred             hhhHHHHHHHHhcCCCeeeeeccccceeEeccccccccccccccccccCh----HHHHHHHh--CCCceeecCc-ccCCc
Confidence            3466778889999999999876543211      11111   11 23455    78888998  8999999997 77888


Q ss_pred             CCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhcc--ccccccc--ccce
Q 020132          116 NIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFG--ANVLHPR--TIIP  191 (330)
Q Consensus       116 g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g--~~v~~p~--a~~~  191 (330)
                      |++.++   ++|.+|+.+|.+++|++++|+|||+|+|++       .+++++++.+|+.++...+  .++|.++  ++..
T Consensus       174 g~~~nl---~~d~~aa~iA~~l~AdkLI~ltdv~Gl~~d-------~~~i~~~~~~~~~~~~~~~~~tgGM~~Kl~aA~~  243 (282)
T d2btya1         174 GHSYNI---NADTAAAEIAKSLMAEKLILLTDVDGVLKD-------GKLISTLTPDEAEELIRDGTVTGGMIPKVECAVS  243 (282)
T ss_dssp             SCEEEC---CHHHHHHHHHHHHTCSEEEEEESSSSCEET-------TEECCEECHHHHHHHHTTTCSCTTHHHHHHHHHH
T ss_pred             ceeeec---cccchhHHHhhhcCCceeEEeccccceecC-------ccccccCCHHHHHHHHHcCCcCchHHHHHHHHHH
Confidence            988876   479999999999999999999999999952       4678888999988887654  4678874  6777


Q ss_pred             eeecccc-eEEeeeccc----------cCceeEeeCC
Q 020132          192 VMRYDIP-IVIRNIFNL----------SVPGIMICRP  217 (330)
Q Consensus       192 a~~~~i~-v~i~~~~~~----------~~~GT~I~~~  217 (330)
                      |.++|++ ++|.|+..+          +..||+|++.
T Consensus       244 A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I~~~  280 (282)
T d2btya1         244 AVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL  280 (282)
T ss_dssp             HHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred             HHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEEEeC
Confidence            8889998 999998543          3469999753

>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.40  E-value=8.2e-14  Score=127.88  Aligned_cols=156  Identities=13%  Similarity=0.173  Sum_probs=117.5

Q ss_pred             HHHHHHHHHhcCCccccccceeEEEEC---CC--------CCCC----CCCCchhhHHHHHHhhccCCCccEEEeeeeec
Q 020132           48 AQMLAAVVRKNGIDCKWMDTREVLIVN---PT--------SSNQ----VDPDFSESEKRLEKWFSQSPSNTIIATGFIAS  112 (330)
Q Consensus        48 a~~~~~~L~~~Gi~a~~l~~~~~~~~~---~~--------~~g~----~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~  112 (330)
                      .+.+.+.+...|+.+..+.+.+.....   ..        .++.    ..++.    +.++.+++  .+.|||++++ +.
T Consensus       107 ~~~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~G~v~~v~~----~~I~~ll~--~g~ipvi~~~-~~  179 (291)
T d2ap9a1         107 GRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNT----AAMLDLVA--AGRIPVVSTL-AP  179 (291)
T ss_dssp             HHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECH----HHHHHHHH--TTCEEEEESE-EE
T ss_pred             HHHHHHHHHhcCCccccchhhhcccccccccccccccccccceeecccccchH----HHHHHHHh--cCCCcccCcc-cc
Confidence            456677888899988877554321110   00        0110    12233    77888998  8999999997 78


Q ss_pred             CCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhhccccccccc--ccc
Q 020132          113 TPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSYFGANVLHPR--TII  190 (330)
Q Consensus       113 ~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~v~~p~--a~~  190 (330)
                      +.+|+..++   ++|.+|+.+|.+++|++|+|+|||||||+.+|+..   .++++++..++.++...+..+|.|+  ++.
T Consensus       180 ~~~g~~~n~---d~D~lAa~lA~~l~AdkLI~LTdv~Gv~~~~~~~~---~~~~~~~~~~~~~~~~~~~gGM~~Kl~aA~  253 (291)
T d2ap9a1         180 DADGVVHNI---NADTAAAAVAEALGAEKLLMLTDIDGLYTRWPDRD---SLVSEIDTGTLAQLLPTLELGMVPKVEACL  253 (291)
T ss_dssp             CTTCCEEEE---CHHHHHHHHHHHTTCSEEEEEESSSSEETTTTCTT---CEESEEEHHHHHHHGGGSCTTTHHHHHHHH
T ss_pred             CCccccccc---cHHHHHHHHHHhcCCcEEEEeeccCcccccccccc---cccccCCHHHHHHHHhhhhCchHHHHHHHH
Confidence            888988775   58999999999999999999999999999887753   4667788888888887778899984  667


Q ss_pred             eeeecccc-eEEeeeccc----------cCceeEeeC
Q 020132          191 PVMRYDIP-IVIRNIFNL----------SVPGIMICR  216 (330)
Q Consensus       191 ~a~~~~i~-v~i~~~~~~----------~~~GT~I~~  216 (330)
                      .|.++|+| ++|.|+..+          +..||.|..
T Consensus       254 ~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~GT~I~r  290 (291)
T d2ap9a1         254 RAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVR  290 (291)
T ss_dssp             HHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEEC
T ss_pred             HHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCceEEec
Confidence            77789998 999998543          346898853

>d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.34  E-value=1.3e-13  Score=105.41  Aligned_cols=73  Identities=16%  Similarity=0.253  Sum_probs=67.5

Q ss_pred             CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHH
Q 020132          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKF  304 (330)
Q Consensus       230 ~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f  304 (330)
                      ..++++++.+|+++|+++|.+|.+.||+++++|++|+++||||+||+|  |+.+|||+++++|..++...+++.+
T Consensus         2 ~~v~~I~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~--Se~~is~~v~~~~~~~a~~~~~~~~   74 (91)
T d2cdqa2           2 SILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELD   74 (91)
T ss_dssp             CCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGGSSSCCCHHHHH
T ss_pred             CceEEEEEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe--cCCeEEEEEchhHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999995  6999999999999988888877654

>d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Aspartokinase allosteric domain-like
domain: Aspartokinase
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=1.6e-14  Score=110.53  Aligned_cols=77  Identities=19%  Similarity=0.244  Sum_probs=71.0

Q ss_pred             CCcccceeecceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHHHHH-Hh
Q 020132          230 SPVKGFATIDNLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESKFRE-AL  308 (330)
Q Consensus       230 ~~~~~i~~~~nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~f~~-~~  308 (330)
                      +.++++++.+|+++|+++|.+|...+|+++|+|++|+++||||+||+|  |+++|||+|+.+|.+++++.||..|+. ++
T Consensus         3 p~vk~I~~~~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~--Se~~is~~v~~~~~~~av~~L~~~~~~~eL   80 (91)
T d2j0wa2           3 PLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT--SEVSVALTLDTTGSTSTGDTLLTQSLLMEL   80 (91)
T ss_dssp             CSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEE--ETTEEEEEECCCCCSSTTCCSSCHHHHHHH
T ss_pred             CcceEEEEeCCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEEc--cCcEEEEEEchhHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999999999999999999999999994  699999999999999999999977654 44

>d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.16  E-value=4.4e-12  Score=117.22  Aligned_cols=120  Identities=17%  Similarity=0.212  Sum_probs=90.6

Q ss_pred             HHHHHhhccCCCccEEEeeeee-------cCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHh
Q 020132           90 KRLEKWFSQSPSNTIIATGFIA-------STPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEA  162 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~i~-------~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a  162 (330)
                      ..+..+++  .+.+|++.+...       .+.+|+..++   ++|..|+.+|.+++|++++|+|||||||+.+|+  +++
T Consensus       176 ~~i~~~~~--~~~i~vl~~~~~~~v~~~~~~~~G~~~ni---naD~lAa~vA~~l~Ad~LIlLTdv~Gv~~~~~~--~~~  248 (313)
T d1e19a_         176 ETIKKLVE--RGVIVIASGGGGVPVILEDGEIKGVEAVI---DKDLAGEKLAEEVNADIFMILTDVNGAALYYGT--EKE  248 (313)
T ss_dssp             HHHHHHHH--TTCEEECSGGGCEEEEEETTEEEECCCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEETTTS--TTC
T ss_pred             cceeeccc--cchhhhhccCCCCCccccCCCcCceEEec---chhHHHHHHHHHHHHHHHHhccCCcceeccCCC--ccc
Confidence            67777887  788888765421       1124666654   589999999999999999999999999987665  567


Q ss_pred             hhhhhhhhHHhhhhhhcc---ccccccc--ccceeeeccc-ceEEeeeccc-----cCceeEeeC
Q 020132          163 VILRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDI-PIVIRNIFNL-----SVPGIMICR  216 (330)
Q Consensus       163 ~~i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i-~v~i~~~~~~-----~~~GT~I~~  216 (330)
                      +++++++.+|+.++...|   .++|.|+  |+..|.+.|+ +++|.+..+.     ...||.|.|
T Consensus       249 ~~i~~l~~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~~~~i~~~l~g~~GT~i~P  313 (313)
T d1e19a_         249 QWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGKTGTQVLP  313 (313)
T ss_dssp             EECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTTSSSEEEEC
T ss_pred             ceeeeCCHHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECChHHHHHHHCCCCCCEEcC
Confidence            899999999999998644   4679995  6666667776 5888654221     125999875

>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: Carbamate kinase
domain: Carbamate kinase
species: Enterococcus faecium [TaxId: 1352]

Probab=99.13  E-value=6.5e-12  Score=115.38  Aligned_cols=108  Identities=17%  Similarity=0.218  Sum_probs=83.8

Q ss_pred             HHHHHhhccCCCccEEEeee-----eecCCCCCcccccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhh
Q 020132           90 KRLEKWFSQSPSNTIIATGF-----IASTPDNIPTTLKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVI  164 (330)
Q Consensus        90 ~~i~~~l~~~~~~VpVv~G~-----i~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~  164 (330)
                      ..+...++  .+.+|+..+-     .+.+.+|+..+.   ++|..|+.+|.+|+|++++|+|||||||+++|+  ++.++
T Consensus       172 ~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~g~~~ni---naD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~--~~~~~  244 (307)
T d1b7ba_         172 ETINTLIK--NDIITISCGGGGIPVVGQELKGVEAVI---DKDFASEKLAELVDADALVILTGVDYVCINYGK--PDEKQ  244 (307)
T ss_dssp             HHHHHHHH--TTEEEECSGGGCEEEETTTTEECSCCC---CHHHHHHHHHHHHTCSEEEEECSSSSCEETTTS--TTCEE
T ss_pred             hhhhhhhh--cCceeeccCCccccccccCCCCcEEec---chhHHHHHHHHHhhhhheeeccccCceeeCCCc--ccccc
Confidence            55555665  5666664331     244556777764   589999999999999999999999999998876  56678


Q ss_pred             hhhhhhHHhhhhhhcc---ccccccc--ccceeeecccc-eEEeee
Q 020132          165 LRTLSYQEAWEMSYFG---ANVLHPR--TIIPVMRYDIP-IVIRNI  204 (330)
Q Consensus       165 i~~is~~e~~~l~~~g---~~v~~p~--a~~~a~~~~i~-v~i~~~  204 (330)
                      +++++.+|+.++...|   .++|.|+  |+..|.++|++ ++|.+.
T Consensus       245 i~~l~~~e~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~~  290 (307)
T d1b7ba_         245 LTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS  290 (307)
T ss_dssp             CSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEEC
T ss_pred             cccCCHHHHHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEECC
Confidence            9999999999998754   4679996  77888889996 666654

>d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Carbamate kinase-like
superfamily: Carbamate kinase-like
family: N-acetyl-l-glutamate kinase
domain: N-acetyl-l-glutamate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=1.4e-06  Score=75.86  Aligned_cols=150  Identities=13%  Similarity=0.071  Sum_probs=98.5

Q ss_pred             HHHHHHHHhcCCccccccceeEE----EECCCCCC---C-CCCCchhhHHHHHHhhccCCCccEEEeeeeecCCCCCccc
Q 020132           49 QMLAAVVRKNGIDCKWMDTREVL----IVNPTSSN---Q-VDPDFSESEKRLEKWFSQSPSNTIIATGFIASTPDNIPTT  120 (330)
Q Consensus        49 ~~~~~~L~~~Gi~a~~l~~~~~~----~~~~~~~g---~-~~~~~~~~~~~i~~~l~~~~~~VpVv~G~i~~~~~g~~~~  120 (330)
                      ..+...+...|.++..+......    ......+.   . ..++.    ..+...+.  .+.+|++.++ +.+.++...+
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~--~~~i~v~~~~-~~~~~~~~~~  158 (258)
T d1gs5a_          86 KTLLAWAKKHQIAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSP----KLINSLLE--NGYLPVVSSI-GVTDEGQLMN  158 (258)
T ss_dssp             HHHHHHHHHTTCCEEEECTTGGGCEEEEECCGGGBSBEEEEECCC----HHHHHHHH--TTCEEEECSE-EECTTSCEEE
T ss_pred             HHHHHHHhccCcccccccccccccccccccccccccccccccccc----chHHHHHh--cccccccccc-ccccCCcEEE
Confidence            34455677778877665543211    01111111   1 12444    66777777  7899999987 6666777665


Q ss_pred             ccccCcchhHHHHHHHHhhceeEEEeecccccccCccchhHhhhhhhhhhHHhhhhhh--ccccccccc--ccceeeecc
Q 020132          121 LKRDGSDFSAAIMGALLRAHQVTIWTDVDGVYSADPRKVSEAVILRTLSYQEAWEMSY--FGANVLHPR--TIIPVMRYD  196 (330)
Q Consensus       121 lgrggsD~~A~~lA~~l~A~~l~~~tdv~Gv~~~dP~~~~~a~~i~~is~~e~~~l~~--~g~~v~~p~--a~~~a~~~~  196 (330)
                      +   .+|..++.+|..++|+. ++++|++|++..++...+      .++..+......  .+.++|.|+  ++..|.++|
T Consensus       159 ~---~~~~~a~~~a~~l~a~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~G  228 (258)
T d1gs5a_         159 V---NADQAATALAATLGADL-ILLSDVSGILDGKGQRIA------EMTAAKAEQLIEQGIITDGMIVKVNAALDAARTL  228 (258)
T ss_dssp             C---CHHHHHHHHHHHHTCEE-EEEESSSSCBCTTSCBCC------EECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHH
T ss_pred             e---chhhhhhhHHHHHHhhh-hhhccccccccccccccc------ccchHHHHHHHhCCcccchHHHHHHHHHHHHHcC
Confidence            4   47999999999999986 467999999987766433      333333333332  356788885  777888899


Q ss_pred             cc-eEEeeeccc---------cCceeEee
Q 020132          197 IP-IVIRNIFNL---------SVPGIMIC  215 (330)
Q Consensus       197 i~-v~i~~~~~~---------~~~GT~I~  215 (330)
                      ++ ++|.|+..+         +..||.|.
T Consensus       229 v~~v~I~~g~~~~~L~~l~~g~~~GT~i~  257 (258)
T d1gs5a_         229 GRPVDIASWRHAEQLPALFNGMPMGTRIL  257 (258)
T ss_dssp             TSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred             CCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence            96 899998654         34699874

>d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Atu0741-like
domain: Hypothetical protein Atu0741
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=95.43  E-value=0.016  Score=39.84  Aligned_cols=58  Identities=12%  Similarity=0.234  Sum_probs=47.2

Q ss_pred             EEeeecccccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHHH
Q 020132          243 LVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       243 ~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      .+++.|..-.+..|+.+++.+.|+++||++..+|  +-.+.- ++|++++.++|++.|.+.
T Consensus         4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vS--ty~~D~-ilVp~~~~~~A~~~L~~~   61 (66)
T d1zhva2           4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVS--TFDGDH-LLVRSNDLEKTADLLANA   61 (66)
T ss_dssp             EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEE--CSSCEE-EEEEGGGHHHHHHHHHHT
T ss_pred             EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEE--eeeccE-EEEEHHHHHHHHHHHHHc
Confidence            3566666555788999999999999999999997  444544 568999999999999763

>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=95.24  E-value=0.0071  Score=43.70  Aligned_cols=74  Identities=22%  Similarity=0.272  Sum_probs=47.9

Q ss_pred             ceeEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC--cceeeeecc--hhh---HHHHHHHHHHHHHHHhccCc
Q 020132          240 NLALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS--EHSVCFAVP--EKE---VKAVAEALESKFREALNAGR  312 (330)
Q Consensus       240 nia~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s--e~sIS~vv~--~~d---~~~av~~Lh~~f~~~~~~~~  312 (330)
                      ...+|+++|.   ++||+.+++.+.|+++|+||.-+.|..-  ...+.+.+.  ..+   +++.++.|.+.+...+.-.+
T Consensus         4 ~~~vitv~G~---DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~~~~~~~l~~~L~~l~~~l~l~i~~~~   80 (86)
T d1u8sa1           4 QHLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSPSNITRVETTLPLLGQQHDLITMMKR   80 (86)
T ss_dssp             EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECHHHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             cEEEEEEEeC---CCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcCcccHHHHHHHHHHHHHHhCCEEEEEE
Confidence            4567999984   6899999999999999999999987653  344444444  333   33334444444444444444


Q ss_pred             cccc
Q 020132          313 LSQH  316 (330)
Q Consensus       313 i~~~  316 (330)
                      ++|.
T Consensus        81 ~~~~   84 (86)
T d1u8sa1          81 TSPH   84 (86)
T ss_dssp             ECCC
T ss_pred             cCCC
Confidence            4443

>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: SP0238-like
domain: UPF0237 protein SP0238
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=94.53  E-value=0.033  Score=39.54  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=32.0

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEeccCC
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS  280 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s  280 (330)
                      ++|+++|   .++||+.+++.+.|+++|+||.-++|...
T Consensus         3 ~vitv~g---~DrpGiVa~vt~~l~~~g~NI~d~~q~~~   38 (83)
T d1zpva1           3 AIITVVG---KDKSGIVAGVSGKIAELGLNIDDISQTVL   38 (83)
T ss_dssp             EEEEEEE---SCCTTHHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred             EEEEEEc---CCCCCHHHHHHHHHHHCCCeEEEEEeEEe
Confidence            5789998   47899999999999999999999998654

>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=94.24  E-value=0.031  Score=38.80  Aligned_cols=56  Identities=9%  Similarity=0.175  Sum_probs=41.8

Q ss_pred             EeeecccccCCCCchhhhhhhhcccCccEEEEeccCC-cceeeeecchhhHHHHHHHHHHH
Q 020132          244 VNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQASS-EHSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       244 IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~s-e~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      +||.   +.++||.++++...|+++||||..++-+.+ +..|+-++ -++-+++.+.|++.
T Consensus         6 isV~---~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Rii-v~~~e~a~~~L~~~   62 (70)
T d2f06a2           6 LSIF---LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI-VSDPDKAYKALKDN   62 (70)
T ss_dssp             EEEE---ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE-ESCHHHHHHHHHHT
T ss_pred             EEEE---EeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEE-ECChHHHHHHHHHC
Confidence            4554   678999999999999999999999986554 44444332 24667788887663

>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: BT0572-like
domain: Hypothetical protein BT0572
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=93.64  E-value=0.027  Score=39.17  Aligned_cols=54  Identities=15%  Similarity=0.268  Sum_probs=40.7

Q ss_pred             ccccCCCCchhhhhhhhcccCccEEEEeccC-CcceeeeecchhhHHHHHHHHHHH
Q 020132          249 TGMAGVPGTANAIFGAVKDVGANVIMISQAS-SEHSVCFAVPEKEVKAVAEALESK  303 (330)
Q Consensus       249 ~~~~~~~gv~a~if~~L~~~gI~I~~Isq~~-se~sIS~vv~~~d~~~av~~Lh~~  303 (330)
                      -.+.+.||-++++.+.|+++||||....-.. .+..+ +++.-+|.++|.+.|.+.
T Consensus         4 V~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~-~vl~vdd~~~a~~~L~~~   58 (71)
T d2f06a1           4 ISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVAN-VVIRPSNMDKCIEVLKEK   58 (71)
T ss_dssp             EEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEE-EEEEESCHHHHHHHHHHT
T ss_pred             EEecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEE-EEEEECCHHHHHHHHHHC
Confidence            3578999999999999999999997654322 34443 444556888999998774

>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Thermotoga maritima [TaxId: 2336]

Probab=92.13  E-value=0.075  Score=37.56  Aligned_cols=52  Identities=17%  Similarity=0.258  Sum_probs=38.3

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeecch--hhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPE--KEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv~~--~d~~~av~~Lh~  302 (330)
                      ..++||+++|+...|+..|.||..++-+.++    .+++++++.  ..++++.+.|++
T Consensus        10 v~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~K   67 (78)
T d2fgca2          10 VHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYK   67 (78)
T ss_dssp             EECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTT
T ss_pred             EeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhC
Confidence            4578999999999999999999999976653    446666554  445555555543

>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=91.88  E-value=0.073  Score=37.53  Aligned_cols=52  Identities=19%  Similarity=0.318  Sum_probs=38.6

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeecc--hhhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVP--EKEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv~--~~d~~~av~~Lh~  302 (330)
                      ..++||+++|+...|+..|.||+.++-+.++    .++++++.  +..+++..+.|++
T Consensus         9 veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~K   66 (77)
T d2pc6a2           9 MENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNK   66 (77)
T ss_dssp             EECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHH
T ss_pred             EECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhC
Confidence            5678999999999999999999999977653    44666665  4445555555544

>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=91.81  E-value=0.084  Score=37.11  Aligned_cols=52  Identities=13%  Similarity=0.291  Sum_probs=37.9

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCc----ceeeeecch--hhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSE----HSVCFAVPE--KEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se----~sIS~vv~~--~d~~~av~~Lh~  302 (330)
                      ..++||+++|+...|+..|.||+.++-+.++    .++++++..  ..+++..+.|.+
T Consensus         8 v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~K   65 (76)
T d2f1fa1           8 LENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHK   65 (76)
T ss_dssp             EECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHH
T ss_pred             EECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhC
Confidence            4678999999999999999999999977553    345555544  445555555544

>d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: VC0802-like
domain: Hypothetical protein VC0802
species: Vibrio cholerae [TaxId: 666]

Probab=91.76  E-value=0.098  Score=35.43  Aligned_cols=49  Identities=16%  Similarity=0.164  Sum_probs=39.7

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccCCcceeeeecchhhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQASSEHSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~se~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      -.+..|+.+.+-+.|+++||.+..++  +-.+ =-++|++++.++|++.|.+
T Consensus        13 sLe~VGl~A~is~~La~~~Is~nvis--~~~h-DhifVp~~~~~~Al~~L~~   61 (64)
T d1zvpa2          13 SLEAVGLTAAFATKLAEHGISANVIA--GYYH-DHIFVQKEKAQQALQALGE   61 (64)
T ss_dssp             --CCSCHHHHHHHHHHHTTCCCEEEE--CSSC-EEEEEEGGGHHHHHHHHTT
T ss_pred             chHHHhHHHHHHHHHHHCCCCeEEEE--eecc-ceEEEchhhHHHHHHHHHH
Confidence            34567999999999999999999997  3333 3477899999999999864

>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: AF1403 N-terminal domain-like
domain: Hypothetical protein AF1403, N-terminal domain
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.97  E-value=0.12  Score=36.09  Aligned_cols=52  Identities=10%  Similarity=0.139  Sum_probs=37.1

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccC-----Ccceeeeecch-h-hHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQAS-----SEHSVCFAVPE-K-EVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~-----se~sIS~vv~~-~-d~~~av~~Lh~  302 (330)
                      ..+.||+++.+.+.++++++||..++|..     .+..+++.+.. . ++++.++.|.+
T Consensus         8 ~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~   66 (77)
T d1y7pa2           8 AENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKT   66 (77)
T ss_dssp             EECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHT
T ss_pred             EecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHc
Confidence            45789999999999999999999998764     35677777754 2 67777777654

>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.73  E-value=0.21  Score=34.90  Aligned_cols=52  Identities=13%  Similarity=0.203  Sum_probs=38.4

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccC---Cc-ceeeeecchhhHHHHHHHHHH
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQAS---SE-HSVCFAVPEKEVKAVAEALES  302 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~---se-~sIS~vv~~~d~~~av~~Lh~  302 (330)
                      ..+.||+++++-+.|+++||||.....+.   .. .-+.+.+++.-.+++++.|.+
T Consensus        10 ~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~   65 (78)
T d1ygya3          10 YVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAA   65 (78)
T ss_dssp             ESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHH
T ss_pred             eCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCCccHHHHHHHHc
Confidence            46889999999999999999998765332   22 234455566677777777766

>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain
species: Escherichia coli [TaxId: 562]

Probab=86.15  E-value=0.32  Score=34.31  Aligned_cols=29  Identities=17%  Similarity=0.228  Sum_probs=24.8

Q ss_pred             ccCCCCchhhhhhhhcccCccEEEEeccC
Q 020132          251 MAGVPGTANAIFGAVKDVGANVIMISQAS  279 (330)
Q Consensus       251 ~~~~~gv~a~if~~L~~~gI~I~~Isq~~  279 (330)
                      .++.||+++++.+.|+++|+||.....+.
T Consensus        18 ~~d~PGvla~I~~~l~~~~iNI~~~~~~~   46 (84)
T d1sc6a3          18 HENRPGVLTALNKIFAEQGVNIAAQYLQT   46 (84)
T ss_dssp             EESCTTHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             eCCcCCHHHHHHHHHHHcCCCHHHhcccc
Confidence            46899999999999999999998765433

>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: Glycine cleavage system transcriptional repressor
domain: putative transcriptional repressor VC2159
species: Vibrio cholerae [TaxId: 666]

Probab=84.68  E-value=0.29  Score=35.15  Aligned_cols=33  Identities=15%  Similarity=0.064  Sum_probs=27.9

Q ss_pred             eEEeeecccccCCCCchhhhhhhhcccCccEEEEec
Q 020132          242 ALVNVEGTGMAGVPGTANAIFGAVKDVGANVIMISQ  277 (330)
Q Consensus       242 a~IsvvG~~~~~~~gv~a~if~~L~~~gI~I~~Isq  277 (330)
                      .-|.|.|.   ++||+.+++-+.|+++|+||.-++|
T Consensus         7 v~v~v~g~---DrpGIV~~it~~la~~~~nI~~l~t   39 (93)
T d1u8sa2           7 VEVYVESD---DKLGLTEKFTQFFAQRQIGMASLSA   39 (93)
T ss_dssp             EEEEEEES---CCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred             EEEEEEEC---CCCCHHHHHHHHHHHcCCCchhhhc
Confidence            34667774   6899999999999999999988765