Citrus Sinensis ID: 020161

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330
Protein Sequence
MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKYTAD
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHccccccEEEcccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEcccccccccccccccccccEEEccccccccccHHHHHHHcccccccEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEEEcccccccccccHcccccccEEEccccccccccHHHHccccccEEEcccccccccccccHHHHHccccccEEEcccccccccccHHccccccEEEccccccccccHHHHHHccccEEEcccccccccHHHcccccccEEEEEEEEEcccHHHcccccccEEEEEEcccccHHHcccccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccHHHHHcccccEEEcccccccccccccHHHHHccccccEEEccccccccccHHHHccccHHHHccc
Coil and Loop (DISEMBL)
mdmdgekqpsaeatnpdqaveIDLSntvldltsfqlhdldsvefptnlteldltANRLTSLDSRISHLSNLKKLSLRQNLiddaaiepiSRWDALAGLEELILRdnklmkipdvsifkkLSVFDVSfneitsshglsnVTDTLKELYVsknevpkmeeiehfhdlqileFGSNRLRVMENLQNLTNLqelwlgrnrikVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLshngiskmEGLSTLVNLHvldvssnkltlvdDIQNLSrledlwlndnqIESLESIVEAVAGSRETLTTIYlennpckifklfcypqtnfpkytad
Flexible Loop (DISEMBL)
mdmdgekqpsaeatnpdqaVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNeitsshglsnvtdTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTnlqelwlgrNRIKVVNLCGLKCIkkislqsnrltsMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKlfcypqtnfpkytad
Low Complexity Region (SEG)
MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMenlqnltnlqelwlGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKYTAD
Disordered region (IsUnstruct)
********************EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNF******
Disordered Region (DISOPRED)
******************AVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFP*Y***
Disordered Region (DISEMBL)
**************NPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKYTAD
Disordered Region (DISPRO)
*****EKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKYTAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	330	2.2.26 [Sep-21-2011]
Q54Q39	336	Protein phosphatase 1 reg	yes	no	0.827	0.812	0.432	4e-48
Q5HZV9	360	Protein phosphatase 1 reg	yes	no	0.806	0.738	0.391	7e-45
Q15435	360	Protein phosphatase 1 reg	yes	no	0.806	0.738	0.384	9e-45
Q5RFS7	360	Protein phosphatase 1 reg	yes	no	0.806	0.738	0.384	9e-45
Q3UM45	361	Protein phosphatase 1 reg	yes	no	0.806	0.736	0.387	1e-44
Q3T0W4	360	Protein phosphatase 1 reg	yes	no	0.806	0.738	0.376	6e-44
Q6DIQ3	346	Protein phosphatase 1 reg	yes	no	0.718	0.684	0.402	3e-38
Q32PL1	345	Protein phosphatase 1 reg	yes	no	0.806	0.771	0.373	6e-38
P36047	338	Protein phosphatase 1 reg	yes	no	0.803	0.784	0.395	6e-33
P22194	332	Protein phosphatase 1 reg	yes	no	0.790	0.786	0.332	1e-32

>sp|Q54Q39|PP1R7_DICDI Protein phosphatase 1 regulatory subunit pprA OS=Dictyostelium discoideum GN=pprA PE=3 SV=1

 Score =  192 bits (487), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 126/291 (43%), Positives = 181/291 (62%), Gaps = 18/291 (6%)

Query: 27  TVLDLTSFQLHDL--DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDA 84
           T LDLT  Q H    DS   P  L +LDLT  ++T +++ I+HL NLKKL  RQNLI   
Sbjct: 28  TYLDLTG-QPHTSIGDSYNIPETLLDLDLTNCKITKIEN-INHLKNLKKLCFRQNLI--- 82

Query: 85  AIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT-- 142
             E I   D L  LE L L DNKL  I ++  F+ L+  D+SFNEI     LS + D   
Sbjct: 83  --EKIENIDQLKELESLDLYDNKLQVIENIKDFQSLTYLDLSFNEIRIVENLS-IKDIPK 139

Query: 143 LKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVN 201
           +KELY++ N++ K+E ++    ++ LE GSNRLR +ENL+NL N++ LWLGRN+I ++  
Sbjct: 140 IKELYLANNKITKIENLQELVPIKNLELGSNRLREIENLENLVNIETLWLGRNKITEIKG 199

Query: 202 LCGLKCIKKISLQSNRLT--SMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSS 259
           +  L  ++ +SLQSNRLT   +KG      LEELYLSHNGI+ ++GL +L  L  LD+S+
Sbjct: 200 INHLSHLRILSLQSNRLTEIGVKGLVGLNCLEELYLSHNGITDIDGLQSLKQLRTLDISA 259

Query: 260 NKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           NK+  +  +  L  L+++W NDN ++S+++I + V  S   +  +Y E NP
Sbjct: 260 NKIKTLVGLNELPDLDEIWCNDNLVDSMDNIEQQVTKS---IKCLYFERNP 307

Regulatory subunit of protein phosphatase 1.
Dictyostelium discoideum (taxid: 44689)

>sp|Q5HZV9|PP1R7_RAT Protein phosphatase 1 regulatory subunit 7 OS=Rattus norvegicus GN=Ppp1r7 PE=1 SV=1

 Score =  181 bits (459), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 108/276 (39%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D++++    +  ++DL   R+  ++     L  +K L LRQNLI     + I   D L  
Sbjct: 68  DMETISLDRDAEDVDLNHYRIGKIEG-FEVLKKVKSLCLRQNLI-----KCIENLDELQS 121

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ KI ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct: 122 LRELDLYDNQIKKIENLEALTELEVLDISFNLLRNIEGIDKLT-QLKKLFLVNNKINKIE 180

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            I     LQ+LE GSNR+R +EN+  LTNL+ L+LG+N+I K+ NL  L  +  +S+QSN
Sbjct: 181 NISTLQQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALSNLTVLSMQSN 240

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct: 241 RLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 300

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312
            W+NDN +ES  S ++ + G+R +L T+YLE NP +
Sbjct: 301 FWMNDNLLESW-SDLDELKGAR-SLETVYLERNPLQ 334

Regulatory subunit of protein phosphatase 1.

Rattus norvegicus (taxid: 10116)

>sp|Q15435|PP1R7_HUMAN Protein phosphatase 1 regulatory subunit 7 OS=Homo sapiens GN=PPP1R7 PE=1 SV=1

 Score =  181 bits (458), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 106/276 (38%), Positives = 176/276 (63%), Gaps = 10/276 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D++++    +  ++DL   R+  ++     L  +K L LRQNLI     + I   + L  
Sbjct: 68  DMETINLDRDAEDVDLNHYRIGKIEG-FEVLKKVKTLCLRQNLI-----KCIENLEELQS 121

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ KI ++    +L + D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct: 122 LRELDLYDNQIKKIENLEALTELEILDISFNLLRNIEGVDKLT-RLKKLFLVNNKISKIE 180

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            + + H LQ+LE GSNR+R +EN+  LTNL+ L+LG+N+I K+ NL  L  +  +S+QSN
Sbjct: 181 NLSNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSN 240

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct: 241 RLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 300

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312
            W+NDN +ES  S ++ + G+R +L T+YLE NP +
Sbjct: 301 FWMNDNLLESW-SDLDELKGAR-SLETVYLERNPLQ 334

Regulatory subunit of protein phosphatase 1.

Homo sapiens (taxid: 9606)

>sp|Q5RFS7|PP1R7_PONAB Protein phosphatase 1 regulatory subunit 7 OS=Pongo abelii GN=PPP1R7 PE=2 SV=1

 Score =  181 bits (458), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 106/276 (38%), Positives = 176/276 (63%), Gaps = 10/276 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D++++    +  ++DL   R+  ++     L  +K L LRQNLI     + I   + L  
Sbjct: 68  DMETINLDRDAEDVDLNHYRIGKIEG-FEVLKKVKTLCLRQNLI-----KCIENLEELQS 121

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ KI ++    +L + D+SFN + +  G+  VT  LK+L++  N++ K+E
Sbjct: 122 LRELDLYDNQIKKIENLEALTELEILDISFNLLRNIEGVDKVTQ-LKKLFLVNNKISKIE 180

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            + + H LQ+LE GSNR+R +EN+  LTNL+ L+LG+N+I K+ NL  L  +  +S+QSN
Sbjct: 181 NLSNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSN 240

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           RLT ++G +  + L+ELYLSHNGI  +EGL     L +LD++SN++  +++I +L+  ++
Sbjct: 241 RLTKIEGLQNLVNLQELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTEPQE 300

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312
            W+NDN +ES  S ++ + G+R +L T+YLE NP +
Sbjct: 301 FWMNDNLLESW-SDLDELKGAR-SLETVYLERNPLQ 334

Regulatory subunit of protein phosphatase 1.

Pongo abelii (taxid: 9601)

>sp|Q3UM45|PP1R7_MOUSE Protein phosphatase 1 regulatory subunit 7 OS=Mus musculus GN=Ppp1r7 PE=1 SV=2

 Score =  181 bits (458), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 107/276 (38%), Positives = 177/276 (64%), Gaps = 10/276 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D++++    +  ++DLT  R+  ++  +  L  +K L LRQNLI     + I   + L  
Sbjct: 69  DMETINLDRDAEDVDLTHYRIGKIEG-LEVLKKVKSLCLRQNLI-----KCIENLEELQS 122

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ KI ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct: 123 LRELDLYDNQIKKIENLEALTELEVLDISFNMLRNIEGIDKLT-QLKKLFLVNNKINKIE 181

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            I + H LQ+LE GSNR+R +EN+  LTNL+ L+LG+N+I K+ NL  L  +  +S+QSN
Sbjct: 182 NISNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSVQSN 241

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           RL  ++G +  + L ELYLS+NGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct: 242 RLAKIEGLQSLVNLRELYLSNNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 301

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312
            W+NDN +ES  S ++ + G+R +L T+YLE NP +
Sbjct: 302 FWMNDNLLESW-SDLDELKGAR-SLETVYLERNPLQ 335

Regulatory subunit of protein phosphatase 1.

Mus musculus (taxid: 10090)

>sp|Q3T0W4|PP1R7_BOVIN Protein phosphatase 1 regulatory subunit 7 OS=Bos taurus GN=PPP1R7 PE=1 SV=1

 Score =  178 bits (451), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 104/276 (37%), Positives = 174/276 (63%), Gaps = 10/276 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D++++    +  ++DL   R+  ++     L  +K L LRQNLI     + I   + L  
Sbjct: 68  DMETISLDRDAEDVDLNHYRIGKIEG-FEVLKKVKTLCLRQNLI-----KCIENLEGLQS 121

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ +I ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct: 122 LRELDLYDNQIRRIENLDALTELEVLDISFNLLRNIEGIDKLT-RLKKLFLVNNKINKIE 180

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            I   H LQ+LE GSNR+R +EN+  LTNL+ L+LG+N+I K+ NL  L  +  +S+QSN
Sbjct: 181 NISSLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSN 240

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  ++++ +L+ L++
Sbjct: 241 RLTKIEGLQSLVNLRELYLSHNGIEVIEGLDNNNKLTMLDIASNRIKKIENVSHLTELQE 300

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312
            W+NDN ++   S ++ + G+R +L T+YLE NP +
Sbjct: 301 FWMNDNLLDCW-SDLDELKGAR-SLETVYLERNPLQ 334

Regulatory subunit of protein phosphatase 1. Inactivates the PPP1CC isoform 2 during epididymal sperm maturation.

Bos taurus (taxid: 9913)

>sp|Q6DIQ3|PP1R7_XENTR Protein phosphatase 1 regulatory subunit 7 OS=Xenopus tropicalis GN=ppp1r7 PE=2 SV=1

 Score =  159 bits (402), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/246 (40%), Positives = 155/246 (63%), Gaps = 9/246 (3%)

Query: 68  LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127
           L  +K L LRQNLI     + I   + L  L EL L DN++ KI ++   + L + D+SF
Sbjct: 83  LKKVKTLCLRQNLI-----KLIENLEQLVTLTELDLYDNQIRKIGNLETLRDLQILDLSF 137

Query: 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
           N +    GL +++  L+ LY+  N++ ++E       L++LE GSNRLRV+ENL +L  L
Sbjct: 138 NLLRRIEGLESLSH-LQRLYLVNNKISRIENFGTLTQLRLLELGSNRLRVIENLDSLREL 196

Query: 188 QELWLGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL 246
             L+LG+N+I K+ NL  L  +  +S+QSNRLT ++G +  + L ELYLS NGI  +EGL
Sbjct: 197 DSLFLGKNKITKLQNLETLTNLTVLSVQSNRLTKIEGLQNLVNLRELYLSDNGIQVIEGL 256

Query: 247 STLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL 306
                L  LD++SN++  +++I++LS L++ W+NDN +E+  S +E ++G+   L T+YL
Sbjct: 257 ENNNKLTTLDLASNRIKRIENIKHLSELQEFWMNDNLVENW-SDLEELSGA-PGLQTVYL 314

Query: 307 ENNPCK 312
           E NP +
Sbjct: 315 ERNPLQ 320

Regulatory subunit of protein phosphatase 1.

Xenopus tropicalis (taxid: 8364)

>sp|Q32PL1|PP1R7_DANRE Protein phosphatase 1 regulatory subunit 7 OS=Danio rerio GN=ppp1r7 PE=2 SV=1

 Score =  158 bits (399), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 103/276 (37%), Positives = 172/276 (62%), Gaps = 10/276 (3%)

Query: 38  DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           D+D++       ++DL   R+  ++  +  L   K +SLRQNLI     + I   ++L  
Sbjct: 53  DMDTITLDPEEEDVDLVHCRIGKIEG-LEVLLKAKTISLRQNLI-----KRIENLESLVS 106

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           L EL L DN++ K+ ++    +L   DVSFN +    GL ++T  +K+L++  N++  + 
Sbjct: 107 LRELDLYDNQIRKLENLQALTELEQLDVSFNLLRKIEGLDSLT-KVKKLFLLHNKIASIA 165

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            ++H   LQ+LE GSNR+RV+ENL +L++L+ L+LG N+I ++ NL GL  +  +S+QSN
Sbjct: 166 NLDHLTSLQMLELGSNRIRVIENLDSLSSLESLFLGTNKITQLQNLDGLHNLTVLSIQSN 225

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
           R+T ++G +  + L ELYLSHNGI  MEGL     L  LD+++N++  +++I +L+ L++
Sbjct: 226 RITKLEGLQNLVNLRELYLSHNGIEVMEGLENNKKLSTLDIAANRIKKIENISHLTDLKE 285

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312
            W+NDNQIE+   + E    + + L T+YLE NP +
Sbjct: 286 FWMNDNQIENWADLDE--LKNAKGLETVYLERNPLQ 319

Regulatory subunit of protein phosphatase 1.

Danio rerio (taxid: 7955)

>sp|P36047|SDS22_YEAST Protein phosphatase 1 regulatory subunit SDS22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SDS22 PE=1 SV=1

 Score =  141 bits (356), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 110/278 (39%), Positives = 173/278 (62%), Gaps = 13/278 (4%)

Query: 43  EFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
           + P ++  +DL   ++ SL D  +    NLK+L LRQNLI+  +   +   D +  L+  
Sbjct: 39  DLPDDVEVIDLVHLKIKSLEDLNLYRFKNLKQLCLRQNLIESISEVEVLPHDKIVDLD-- 96

Query: 102 ILRDNKLMKIP-DVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
              DNK+  I  +V+   KL+  D+SFN+I     L N+TD L+ LY  +N + K+E + 
Sbjct: 97  -FYDNKIKHISSNVNKLTKLTSLDLSFNKIKHIKNLENLTD-LENLYFVQNSISKIENLS 154

Query: 161 HFHDLQILEFGSNRLRVME--NLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSNR 217
               L+ LE G N++  +E  + + L+NL+E+WLG+N I +++NL  LK +K +S+QSN+
Sbjct: 155 TLKSLKNLELGGNKVHSIEPDSFEGLSNLEEIWLGKNSIPRLINLHPLKNLKILSIQSNK 214

Query: 218 LTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDL 277
           L  ++  EE   LEELYLSHN I+K+EGL   + L  LDV+SNK+T ++++ +LS L D+
Sbjct: 215 LKKIENLEELTNLEELYLSHNFITKIEGLEKNLKLTTLDVTSNKITSLENLNHLSNLTDI 274

Query: 278 WLNDNQI-ESLESIVEAVAG-SRETLTTIYLENNPCKI 313
           W + N+I +S ES+ E ++  SR  L TIYLE NP ++
Sbjct: 275 WASFNKIDQSFESLGENLSALSR--LETIYLEGNPIQL 310

Potential regulator of the mitotic function of yeast type 1 protein phosphatase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|P22194|SDS22_SCHPO Protein phosphatase 1 regulatory subunit SDS22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sds22 PE=1 SV=2

 Score =  140 bits (353), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 94/283 (33%), Positives = 161/283 (56%), Gaps = 22/283 (7%)

Query: 51  LDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLM 109
           ++L  +R+ S+ S  +    NL+ L LRQN I      P         L EL L DN ++
Sbjct: 43  VELIQSRIQSMASLGLERFKNLQSLCLRQNQIKKIESVP-------ETLTELDLYDNLIV 95

Query: 110 KIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILE 169
           +I ++   K L+  D+SFN I +   ++++   L+ L+  +N + ++E +E    L  LE
Sbjct: 96  RIENLDNVKNLTYLDLSFNNIKTIRNINHLKG-LENLFFVQNRIRRIENLEGLDRLTNLE 154

Query: 170 FGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECI 228
            G N++RV+ENL  L NL++LW+G+N+I K  N   L+ +  +S+QSNR+T  +    C+
Sbjct: 155 LGGNKIRVIENLDTLVNLEKLWVGKNKITKFENFEKLQKLSLLSIQSNRITQFENLA-CL 213

Query: 229 A--LEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIES 286
           +  L ELY+SHNG++   G+  L NL +LDVS+N +  +  +  L  L +LW ++N++ S
Sbjct: 214 SHCLRELYVSHNGLTSFSGIEVLENLEILDVSNNMIKHLSYLAGLKNLVELWASNNELSS 273

Query: 287 LESIVEAVAGSRETLTTIYLENNPCK-----IFK---LFCYPQ 321
            + I + ++G ++ L T+Y E NP +     +++     C PQ
Sbjct: 274 FQEIEDELSGLKK-LETVYFEGNPLQKTNPAVYRNKVRLCLPQ 315

Essential for the mitotic metaphase/anaphase transition. Positively modulates protein phosphatase-1. Possibly by forming a repeating helical rod that is capable of enhancing a PP1-dependent dephosphorylation activity.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
224114507	337	predicted protein [Populus trichocarpa]	0.933	0.913	0.798	1e-138
255546363	312	protein phosphatases pp1 regulatory subu	0.936	0.990	0.790	1e-136
224142195	336	predicted protein [Populus trichocarpa]	0.930	0.913	0.785	1e-133
449443173	333	PREDICTED: protein phosphatase 1 regulat	0.933	0.924	0.769	1e-132
21536755	328	unknown [Arabidopsis thaliana]	0.915	0.920	0.768	1e-132
15241153	328	leucine-rich repeat-containing protein [	0.881	0.887	0.807	1e-131
357520899	329	Protein phosphatase 1 regulatory subunit	0.909	0.911	0.770	1e-129
225445122	333	PREDICTED: protein phosphatase 1 regulat	0.921	0.912	0.769	1e-128
147788249	324	hypothetical protein VITISV_020599 [Viti	0.921	0.938	0.769	1e-128
363814364	330	uncharacterized protein LOC100781548 [Gl	0.881	0.881	0.786	1e-128

>gi|224114507|ref|XP_002332347.1| predicted protein [Populus trichocarpa] gi|222832068|gb|EEE70545.1| predicted protein [Populus trichocarpa]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 249/312 (79%), Positives = 275/312 (88%), Gaps = 4/312 (1%)

Query: 3   MDGEKQPSAEATNP---DQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT 59
           MDGE Q S   +NP   DQ VEID S+TVLDLTSFQLHDL+SVE   +LTELDLTANRL+
Sbjct: 1   MDGETQ-SPRGSNPEADDQTVEIDPSSTVLDLTSFQLHDLNSVELSPSLTELDLTANRLS 59

Query: 60  SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKK 119
           SLD RI+HLSNL KLSLRQNLIDDAAIEP SRWD+++GL+EL+LRDNKL KIPD  IFK 
Sbjct: 60  SLDPRIAHLSNLIKLSLRQNLIDDAAIEPFSRWDSISGLQELVLRDNKLKKIPDTGIFKS 119

Query: 120 LSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME 179
           L VFDVSFNEITS HGLS  ++TLKELYVSKNEV K+EEI+H + LQILE GSNRLRVME
Sbjct: 120 LLVFDVSFNEITSLHGLSKASNTLKELYVSKNEVTKIEEIDHLYQLQILELGSNRLRVME 179

Query: 180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNG 239
           N+ N T+LQELW+GRNRIKVVNLCGLKCIKK+SLQSNRLTSMKGFEEC+ALEELYLSHNG
Sbjct: 180 NMGNFTSLQELWMGRNRIKVVNLCGLKCIKKLSLQSNRLTSMKGFEECVALEELYLSHNG 239

Query: 240 ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
           I+KMEGLSTL NLHVLDVSSNKLT VDDIQNL++LEDLWLNDNQIESL+ + EAV  SRE
Sbjct: 240 IAKMEGLSTLANLHVLDVSSNKLTSVDDIQNLTQLEDLWLNDNQIESLKGVAEAVISSRE 299

Query: 300 TLTTIYLENNPC 311
            LTTIYLENNPC
Sbjct: 300 KLTTIYLENNPC 311

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546363|ref|XP_002514241.1| protein phosphatases pp1 regulatory subunit, putative [Ricinus communis] gi|223546697|gb|EEF48195.1| protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]

 Score =  491 bits (1265), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 246/311 (79%), Positives = 270/311 (86%), Gaps = 2/311 (0%)

Query: 3   MDGEKQP--SAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTS 60
           MDG  QP       + DQ VEID S+T+LDLTSFQLHDLDSVE    L ELDLTANRL+ 
Sbjct: 1   MDGATQPPRGLNLDSEDQTVEIDPSSTILDLTSFQLHDLDSVELSPGLIELDLTANRLSR 60

Query: 61  LDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKL 120
           LD RI+HLSNLKKLSLRQNL+DDAAI+P S W+ L+GLEEL+LRDNKLMKIPDV+IFK L
Sbjct: 61  LDPRIAHLSNLKKLSLRQNLVDDAAIQPFSGWEELSGLEELVLRDNKLMKIPDVTIFKSL 120

Query: 121 SVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN 180
            VFDVSFNEI S +GLS V++TLKELYVSKNEV KMEEI+H + LQ+LE GSNRLRVMEN
Sbjct: 121 LVFDVSFNEIRSLNGLSKVSNTLKELYVSKNEVTKMEEIDHLYQLQMLELGSNRLRVMEN 180

Query: 181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGI 240
           LQNLT LQELWLGRNRIK +NLCGLKCIKK+SLQSNRLTSMKG EEC+ALEELYLSHNGI
Sbjct: 181 LQNLTTLQELWLGRNRIKTINLCGLKCIKKLSLQSNRLTSMKGLEECVALEELYLSHNGI 240

Query: 241 SKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300
           SKMEGLSTLVNL VLDVSSNKLT VDDIQNL+++EDLWLNDNQIESLE I EA+ GSRE 
Sbjct: 241 SKMEGLSTLVNLSVLDVSSNKLTSVDDIQNLTQIEDLWLNDNQIESLEGIAEAIVGSREK 300

Query: 301 LTTIYLENNPC 311
           LTTIY ENNPC
Sbjct: 301 LTTIYFENNPC 311

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142195|ref|XP_002324444.1| predicted protein [Populus trichocarpa] gi|222865878|gb|EEF03009.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 245/312 (78%), Positives = 276/312 (88%), Gaps = 5/312 (1%)

Query: 3   MDGEKQPSAEATNP---DQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT 59
           MDG + P+   +NP   DQ VEID S+T+LDLTSFQLHDL SV+  ++L ELDLTANRL+
Sbjct: 1   MDGAQPPNG--SNPEADDQTVEIDPSSTILDLTSFQLHDLSSVDLSSSLAELDLTANRLS 58

Query: 60  SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKK 119
           SLD RI+HLSNLKKLSLRQNLIDDAA+EP SRWD+L+ L+EL+LRDNKL KIPD  IFK 
Sbjct: 59  SLDPRIAHLSNLKKLSLRQNLIDDAAVEPFSRWDSLSALQELVLRDNKLKKIPDSGIFKN 118

Query: 120 LSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME 179
           L VFDVSFNEITS HGLS V++TLKELYVSKNEV K+EEI+H + LQILE GSNRLRVME
Sbjct: 119 LLVFDVSFNEITSLHGLSKVSNTLKELYVSKNEVTKIEEIDHLYQLQILELGSNRLRVME 178

Query: 180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNG 239
           ++QN T+LQELWLGRNRIKVVNLCGLKCIKK+SLQSNR+TSMKGFEEC+ALEELYLSHNG
Sbjct: 179 SMQNFTSLQELWLGRNRIKVVNLCGLKCIKKLSLQSNRVTSMKGFEECVALEELYLSHNG 238

Query: 240 ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
           I+KMEGLSTLVNL VLDVSSNKLT V+DIQNL++LEDLWLNDNQIESLE + EAV  SRE
Sbjct: 239 IAKMEGLSTLVNLRVLDVSSNKLTSVNDIQNLTQLEDLWLNDNQIESLEGVSEAVVSSRE 298

Query: 300 TLTTIYLENNPC 311
            LTTIYLENNPC
Sbjct: 299 KLTTIYLENNPC 310

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443173|ref|XP_004139355.1| PREDICTED: protein phosphatase 1 regulatory subunit pprA-like [Cucumis sativus] gi|449487955|ref|XP_004157884.1| PREDICTED: protein phosphatase 1 regulatory subunit pprA-like [Cucumis sativus]

 Score =  478 bits (1231), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/308 (76%), Positives = 272/308 (88%)

Query: 11  AEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSN 70
           +E +   ++ E DL++T LDLTSFQLHDLDS+E P++LTELDLTANRLT+LD RI  LSN
Sbjct: 5   SEPSPVSESKEDDLNSTFLDLTSFQLHDLDSIELPSSLTELDLTANRLTNLDPRIGELSN 64

Query: 71  LKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEI 130
           LKKLSLRQNLI++AA+E +S W+AL+GLEELILRDN++ KIPD SIFK+L VFDVSFNEI
Sbjct: 65  LKKLSLRQNLINNAAVESLSHWNALSGLEELILRDNQMTKIPDASIFKRLLVFDVSFNEI 124

Query: 131 TSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQEL 190
           TS HGLS V++TLKELYVSKNEV KMEE++HF  LQILE GSNRLRVMEN++NLTNLQEL
Sbjct: 125 TSLHGLSKVSNTLKELYVSKNEVTKMEELDHFLQLQILELGSNRLRVMENMENLTNLQEL 184

Query: 191 WLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLV 250
           WLGRNRIK VNLCGLKC+KKISLQSNRLTSM GFE+C+ALEELYLSHNGISK+EG+STLV
Sbjct: 185 WLGRNRIKAVNLCGLKCLKKISLQSNRLTSMTGFEDCVALEELYLSHNGISKIEGVSTLV 244

Query: 251 NLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           NL +LDVSSNKLT V D+QNL+ LEDLWLNDNQIESLE+I E VAGSRE LTTIYLENNP
Sbjct: 245 NLRILDVSSNKLTSVSDVQNLTCLEDLWLNDNQIESLETIAEDVAGSREKLTTIYLENNP 304

Query: 311 CKIFKLFC 318
           C     +C
Sbjct: 305 CAKTSNYC 312

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21536755|gb|AAM61087.1| unknown [Arabidopsis thaliana]

 Score =  476 bits (1224), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 239/311 (76%), Positives = 266/311 (85%), Gaps = 9/311 (2%)

Query: 1   MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTS 60
           M+ D E++P  E         I  SN VLDLTS+QLH LD+VE P NL ELDLTANRL+ 
Sbjct: 1   MNSDKEEEPLEE---------IGDSNNVLDLTSYQLHSLDTVELPPNLIELDLTANRLSG 51

Query: 61  LDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKL 120
           LDSRI+ LS LKKLSLRQNLIDD+A+EP+S WDAL+ LEEL+LRDNKL K+PDVSIF KL
Sbjct: 52  LDSRIAQLSTLKKLSLRQNLIDDSAVEPLSHWDALSDLEELVLRDNKLAKVPDVSIFTKL 111

Query: 121 SVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN 180
            V+D+SFNEITS  G+S  + TLKELYVSKNEV K+ EIEH H+LQILE GSNRLRVMEN
Sbjct: 112 LVYDISFNEITSLEGISKASSTLKELYVSKNEVNKIMEIEHLHNLQILELGSNRLRVMEN 171

Query: 181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGI 240
           L+N T L+ELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEEC+ALEELYLSHNGI
Sbjct: 172 LENFTKLEELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECVALEELYLSHNGI 231

Query: 241 SKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300
           SKMEGLS LVNL VLDVS+NKLT VDDIQNL++LEDLWLNDNQIESLE+I EAV GS+E 
Sbjct: 232 SKMEGLSALVNLRVLDVSNNKLTSVDDIQNLTKLEDLWLNDNQIESLEAITEAVTGSKEK 291

Query: 301 LTTIYLENNPC 311
           LTTIYLENNPC
Sbjct: 292 LTTIYLENNPC 302

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241153|ref|NP_197469.1| leucine-rich repeat-containing protein [Arabidopsis thaliana] gi|27808582|gb|AAO24571.1| At5g19680 [Arabidopsis thaliana] gi|110736219|dbj|BAF00080.1| hypothetical protein [Arabidopsis thaliana] gi|332005354|gb|AED92737.1| leucine-rich repeat-containing protein [Arabidopsis thaliana]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 235/291 (80%), Positives = 259/291 (89%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
           EI  SN VLDLTS+QLH LD+VE P NL ELDLTANRL+ LDSRI+ LS LKKLSLRQNL
Sbjct: 12  EIGDSNNVLDLTSYQLHSLDTVELPPNLIELDLTANRLSGLDSRIAQLSTLKKLSLRQNL 71

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
           IDD+A+EP+S WDAL+ LEEL+LRDNKL K+PDVSIF KL V+D+SFNEITS  G+S  +
Sbjct: 72  IDDSAVEPLSHWDALSDLEELVLRDNKLAKVPDVSIFTKLLVYDISFNEITSLEGISKAS 131

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV 200
            TLKELYVSKNEV K+ EIEH H+LQILE GSNRLRVMENL+N T L+ELWLGRNRIKVV
Sbjct: 132 STLKELYVSKNEVNKIMEIEHLHNLQILELGSNRLRVMENLENFTKLEELWLGRNRIKVV 191

Query: 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260
           NLCGLKCIKKISLQSNRLTSMKGFEEC+ALEELYLSHNGISKMEGLS LVNL VLDVS+N
Sbjct: 192 NLCGLKCIKKISLQSNRLTSMKGFEECVALEELYLSHNGISKMEGLSALVNLRVLDVSNN 251

Query: 261 KLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311
           KLT VDDIQNL++LEDLWLNDNQIESLE+I EAV GS+E LTTIYLENNPC
Sbjct: 252 KLTSVDDIQNLTKLEDLWLNDNQIESLEAITEAVTGSKEKLTTIYLENNPC 302

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520899|ref|XP_003630738.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula] gi|355524760|gb|AET05214.1| Protein phosphatase 1 regulatory subunit [Medicago truncatula]

 Score =  469 bits (1206), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 239/310 (77%), Positives = 262/310 (84%), Gaps = 10/310 (3%)

Query: 20  VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQN 79
           +E D S+T+LDLTS+QLHDLDSVE P+NLTELDLTANRL++LD RI+ LS+LK LSLRQN
Sbjct: 12  LEDDESSTLLDLTSYQLHDLDSVELPSNLTELDLTANRLSTLDPRIAQLSDLKNLSLRQN 71

Query: 80  LIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV 139
           LI DAA+ P+S W+ L+ LEEL+LRDN+L  IPDVSIFKKL VFDVSFNEI S HG+S V
Sbjct: 72  LITDAAVVPLSSWNTLSSLEELVLRDNQLKNIPDVSIFKKLLVFDVSFNEIASLHGVSRV 131

Query: 140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKV 199
            +TLKELYVSKNEV K+EEIEHFH LQILE GSN+LRVMENLQ L NLQELWLGRNRIKV
Sbjct: 132 CNTLKELYVSKNEVTKIEEIEHFHQLQILELGSNKLRVMENLQTLVNLQELWLGRNRIKV 191

Query: 200 VNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSS 259
           VNLCGLKCIKKISLQSNRLTSM GFE CIALEELYLSHNGI+KMEGLS+L NL VLDVSS
Sbjct: 192 VNLCGLKCIKKISLQSNRLTSMIGFEGCIALEELYLSHNGITKMEGLSSLANLRVLDVSS 251

Query: 260 NKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCY 319
           NKLT VDDI NL++LEDLWLNDNQIESLE   EAVAGSRE LTTIYLENN C        
Sbjct: 252 NKLTSVDDIHNLTQLEDLWLNDNQIESLEGFAEAVAGSREKLTTIYLENNLC-------- 303

Query: 320 PQTNFPKYTA 329
                P YTA
Sbjct: 304 --AKSPNYTA 311

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445122|ref|XP_002283839.1| PREDICTED: protein phosphatase 1 regulatory subunit pprA [Vitis vinifera] gi|297738769|emb|CBI28014.3| unnamed protein product [Vitis vinifera]

 Score =  465 bits (1197), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/313 (76%), Positives = 272/313 (86%), Gaps = 9/313 (2%)

Query: 17  DQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSL 76
           + A++ D S+TVLDLTS+QLH L+S++ P NLTELDLTANRLT LDSRI  LSNLKKLSL
Sbjct: 12  ESAIQYDGSSTVLDLTSYQLHSLESIDIPFNLTELDLTANRLTVLDSRIGLLSNLKKLSL 71

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL 136
           RQNL+DDA ++ IS WDA++GLEEL+LRDNKL KIPDVSIFKKL VFDVSFNEI+S +GL
Sbjct: 72  RQNLLDDAGVDMISGWDAISGLEELVLRDNKLTKIPDVSIFKKLLVFDVSFNEISSLNGL 131

Query: 137 SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNR 196
           + V++TLKELYVSKNEV  MEEI+HFH+LQILE GSNRLRVMENLQ LT L+ELWLGRNR
Sbjct: 132 AKVSNTLKELYVSKNEVTTMEEIDHFHELQILELGSNRLRVMENLQTLTKLKELWLGRNR 191

Query: 197 IKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLD 256
           I+VVNLCGLKCI+KISLQSNRLTSMKGFE+C+ALEELYLSHNGI+KMEGLSTLVNL VLD
Sbjct: 192 IRVVNLCGLKCIEKISLQSNRLTSMKGFEDCVALEELYLSHNGIAKMEGLSTLVNLRVLD 251

Query: 257 VSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL 316
            SSNKLT VDDI+NL++LEDLWLNDNQI SLE I EAVAGSRE LTTIYLENNPC     
Sbjct: 252 ASSNKLTAVDDIENLTQLEDLWLNDNQITSLEGIAEAVAGSREKLTTIYLENNPCA---- 307

Query: 317 FCYPQTNFPKYTA 329
                 N P Y+A
Sbjct: 308 -----KNSPNYSA 315

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147788249|emb|CAN64835.1| hypothetical protein VITISV_020599 [Vitis vinifera]

 Score =  464 bits (1195), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 241/313 (76%), Positives = 271/313 (86%), Gaps = 9/313 (2%)

Query: 17  DQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSL 76
           + A++ D S+TVLDLTS+QLH L+S++ P NLTELDLTANRLT LDSRI  LSNLKKLSL
Sbjct: 3   ESAIQYDGSSTVLDLTSYQLHSLESIDIPFNLTELDLTANRLTVLDSRIGLLSNLKKLSL 62

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL 136
           RQNL+DDA ++ IS WDA++GLEEL+LRDNKL KIPDVSIFKKL VFDVSFNEI+S +GL
Sbjct: 63  RQNLLDDAGVDMISGWDAISGLEELVLRDNKLTKIPDVSIFKKLLVFDVSFNEISSLNGL 122

Query: 137 SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNR 196
           + V++TLKELYVSKNEV  MEEI+HFH+LQILE GSNRLRVMENLQ LT L+ELWLGRNR
Sbjct: 123 AKVSNTLKELYVSKNEVTTMEEIDHFHELQILELGSNRLRVMENLQTLTKLKELWLGRNR 182

Query: 197 IKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLD 256
           I+VVNLCGLKCI+KISLQSNRLTSMKGFE+C+ALEELYLSHNGI+KMEGLSTLVNL VLD
Sbjct: 183 IRVVNLCGLKCIEKISLQSNRLTSMKGFEDCVALEELYLSHNGIAKMEGLSTLVNLRVLD 242

Query: 257 VSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL 316
            SSNKLT VDDI NL++LEDLWLNDNQI SLE I EAVAGSRE LTTIYLENNPC     
Sbjct: 243 ASSNKLTAVDDIXNLTQLEDLWLNDNQITSLEGIAEAVAGSREKLTTIYLENNPCA---- 298

Query: 317 FCYPQTNFPKYTA 329
                 N P Y+A
Sbjct: 299 -----KNSPNYSA 306

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814364|ref|NP_001242821.1| uncharacterized protein LOC100781548 [Glycine max] gi|255636570|gb|ACU18623.1| unknown [Glycine max]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/291 (78%), Positives = 260/291 (89%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
           E D S+T+LDLTS+QLHDLDSVE P +LTELDLTANRL++LD RI +LS+L+KLSLRQNL
Sbjct: 14  EDDPSSTLLDLTSYQLHDLDSVELPPSLTELDLTANRLSTLDPRIGNLSHLQKLSLRQNL 73

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
           I DAA+ P+S W+AL+ LEEL+LRDN+   IPDVS+FKKL VFDV+FNEI+S HGLS V+
Sbjct: 74  ISDAAVLPLSSWNALSSLEELVLRDNQFKNIPDVSVFKKLLVFDVAFNEISSLHGLSRVS 133

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV 200
           DTLKELYVSKNEV  +EEIEHFH LQ+LE GSN+LRVMENLQ+L NLQELWLGRNRIKVV
Sbjct: 134 DTLKELYVSKNEVAMIEEIEHFHQLQLLELGSNKLRVMENLQSLENLQELWLGRNRIKVV 193

Query: 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260
           NLCGLKCIKKISLQSNRLTSM GF+ C+ LEELYLSHNGI+KMEGLS+LVNL VLDVSSN
Sbjct: 194 NLCGLKCIKKISLQSNRLTSMMGFDGCVTLEELYLSHNGIAKMEGLSSLVNLRVLDVSSN 253

Query: 261 KLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311
           K+TLVDDI NL++LEDLWLNDNQI SLE I EAV GS+E LTTIYLENNPC
Sbjct: 254 KITLVDDIVNLTKLEDLWLNDNQIASLEGIAEAVTGSKEKLTTIYLENNPC 304

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	330
TAIR|locus:2183144	328	AT5G19680 [Arabidopsis thalian	0.881	0.887	0.773	1.3e-114
DICTYBASE|DDB_G0284039	336	pprA "Protein phosphatase 1 re	0.878	0.863	0.387	7.1e-45
MGI|MGI:1913635	361	Ppp1r7 "protein phosphatase 1,	0.8	0.731	0.364	7.3e-43
UNIPROTKB|Q15435	360	PPP1R7 "Protein phosphatase 1	0.8	0.733	0.361	7.3e-43
RGD|1308169	360	Ppp1r7 "protein phosphatase 1,	0.8	0.733	0.368	9.3e-43
UNIPROTKB|Q3T0W4	360	PPP1R7 "Protein phosphatase 1	0.8	0.733	0.354	8.4e-42
ZFIN|ZDB-GENE-051113-288	345	ppp1r7 "protein phosphatase 1,	0.912	0.872	0.325	2.8e-41
SGD|S000001676	338	SDS22 "Regulatory subunit of t	0.803	0.784	0.370	1.5e-37
ASPGD|ASPL0000056701	355	AN10088 [Emericella nidulans (	0.9	0.836	0.330	4.9e-37
UNIPROTKB|G4N707	381	MGG_03649 "Protein phosphatase	0.793	0.687	0.334	3.1e-35

TAIR|locus:2183144 AT5G19680 [Arabidopsis thaliana (taxid:3702)]

 Score = 1130 (402.8 bits), Expect = 1.3e-114, P = 1.3e-114
 Identities = 225/291 (77%), Positives = 247/291 (84%)

Query:    21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
             EI  SN VLDLTS+QLH LD+VE P NL ELDLTANRL+ LDSRI+ LS LKKLSLRQNL
Sbjct:    12 EIGDSNNVLDLTSYQLHSLDTVELPPNLIELDLTANRLSGLDSRIAQLSTLKKLSLRQNL 71

Query:    81 IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
             IDD+A+EP+S WDAL+ LEEL+LRDNKL K+PDVSIF KL V+D+SFNEITS  G+S  +
Sbjct:    72 IDDSAVEPLSHWDALSDLEELVLRDNKLAKVPDVSIFTKLLVYDISFNEITSLEGISKAS 131

Query:   141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVV 200
              TLKELYVSKNEV K+ EIEH H+LQILE GSNRLRVM              GRNRIKVV
Sbjct:   132 STLKELYVSKNEVNKIMEIEHLHNLQILELGSNRLRVMENLENFTKLEELWLGRNRIKVV 191

Query:   201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260
             NLCGLKCIKKISLQSNRLTSMKGFEEC+ALEELYLSHNGISKMEGLS LVNL VLDVS+N
Sbjct:   192 NLCGLKCIKKISLQSNRLTSMKGFEECVALEELYLSHNGISKMEGLSALVNLRVLDVSNN 251

Query:   261 KLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311
             KLT VDDIQNL++LEDLWLNDNQIESLE+I EAV GS+E LTTIYLENNPC
Sbjct:   252 KLTSVDDIQNLTKLEDLWLNDNQIESLEAITEAVTGSKEKLTTIYLENNPC 302

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0284039 pprA "Protein phosphatase 1 regulatory subunit 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 120/310 (38%), Positives = 179/310 (57%)

Query:    10 SAEATNPDQAVEIDLSN--TVLDLTSFQLHDL--DSVEFPTNLTELDLTANRLTSLDSRI 65
             ++E    ++ +E +     T LDLT  Q H    DS   P  L +LDLT  ++T +++ I
Sbjct:     9 NSEEIKENEKIESETEEPITYLDLTG-QPHTSIGDSYNIPETLLDLDLTNCKITKIEN-I 66

Query:    66 SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV 125
             +HL NLKKL  RQNLI+   IE I   D L  LE L L DNKL  I ++  F+ L+  D+
Sbjct:    67 NHLKNLKKLCFRQNLIEK--IENI---DQLKELESLDLYDNKLQVIENIKDFQSLTYLDL 121

Query:   126 SFNEITSSHGLSNVTDT--LKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXX 183
             SFNEI     LS + D   +KELY++ N++ K+E ++    ++ LE GSNRLR +     
Sbjct:   122 SFNEIRIVENLS-IKDIPKIKELYLANNKITKIENLQELVPIKNLELGSNRLREIENLEN 180

Query:   184 XXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGI 240
                      GRN+I ++  +  L  ++ +SLQSNRLT +  KG      LEELYLSHNGI
Sbjct:   181 LVNIETLWLGRNKITEIKGINHLSHLRILSLQSNRLTEIGVKGLVGLNCLEELYLSHNGI 240

Query:   241 SKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300
             + ++GL +L  L  LD+S+NK+  +  +  L  L+++W NDN ++S+++I + V  S   
Sbjct:   241 TDIDGLQSLKQLRTLDISANKIKTLVGLNELPDLDEIWCNDNLVDSMDNIEQQVTKS--- 297

Query:   301 LTTIYLENNP 310
             +  +Y E NP
Sbjct:   298 IKCLYFERNP 307

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1913635 Ppp1r7 "protein phosphatase 1, regulatory (inhibitor) subunit 7" [Mus musculus (taxid:10090)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 100/274 (36%), Positives = 165/274 (60%)

Query:    38 DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
             D++++    +  ++DLT  R+  ++  +  L  +K L LRQNLI    IE +   + L  
Sbjct:    69 DMETINLDRDAEDVDLTHYRIGKIEG-LEVLKKVKSLCLRQNLIK--CIENL---EELQS 122

Query:    98 LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
             L EL L DN++ KI ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct:   123 LRELDLYDNQIKKIENLEALTELEVLDISFNMLRNIEGIDKLTQ-LKKLFLVNNKINKIE 181

Query:   158 EIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSN 216
              I + H LQ+LE GSNR+R +              G+N+I K+ NL  L  +  +S+QSN
Sbjct:   182 NISNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSVQSN 241

Query:   217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
             RL  ++G +  + L ELYLS+NGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct:   242 RLAKIEGLQSLVNLRELYLSNNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 301

Query:   277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
              W+NDN +ES   + E + G+R +L T+YLE NP
Sbjct:   302 FWMNDNLLESWSDLDE-LKGAR-SLETVYLERNP 333

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q15435 PPP1R7 "Protein phosphatase 1 regulatory subunit 7" [Homo sapiens (taxid:9606)]

 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 99/274 (36%), Positives = 164/274 (59%)

Query:    38 DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
             D++++    +  ++DL   R+  ++     L  +K L LRQNLI    IE +   + L  
Sbjct:    68 DMETINLDRDAEDVDLNHYRIGKIEG-FEVLKKVKTLCLRQNLIK--CIENL---EELQS 121

Query:    98 LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
             L EL L DN++ KI ++    +L + D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct:   122 LRELDLYDNQIKKIENLEALTELEILDISFNLLRNIEGVDKLT-RLKKLFLVNNKISKIE 180

Query:   158 EIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSN 216
              + + H LQ+LE GSNR+R +              G+N+I K+ NL  L  +  +S+QSN
Sbjct:   181 NLSNLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSN 240

Query:   217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
             RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct:   241 RLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 300

Query:   277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
              W+NDN +ES   + E + G+R +L T+YLE NP
Sbjct:   301 FWMNDNLLESWSDLDE-LKGAR-SLETVYLERNP 332

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0030234 "enzyme regulator activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=TAS

GO:0008599 "protein phosphatase type 1 regulator activity" evidence=TAS

GO:0050790 "regulation of catalytic activity" evidence=NAS

RGD|1308169 Ppp1r7 "protein phosphatase 1, regulatory subunit 7" [Rattus norvegicus (taxid:10116)]

 Score = 452 (164.2 bits), Expect = 9.3e-43, P = 9.3e-43
 Identities = 101/274 (36%), Positives = 162/274 (59%)

Query:    38 DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
             D++++    +  ++DL   R+  ++     L  +K L LRQNLI    IE +   D L  
Sbjct:    68 DMETISLDRDAEDVDLNHYRIGKIEG-FEVLKKVKSLCLRQNLIK--CIENL---DELQS 121

Query:    98 LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
             L EL L DN++ KI ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct:   122 LRELDLYDNQIKKIENLEALTELEVLDISFNLLRNIEGIDKLTQ-LKKLFLVNNKINKIE 180

Query:   158 EIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSN 216
              I     LQ+LE GSNR+R +              G+N+I K+ NL  L  +  +S+QSN
Sbjct:   181 NISTLQQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALSNLTVLSMQSN 240

Query:   217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
             RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  +++I +L+ L++
Sbjct:   241 RLTKIEGLQNLVNLRELYLSHNGIEVIEGLENNNKLTMLDIASNRIKKIENISHLTELQE 300

Query:   277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
              W+NDN +ES   + E + G+R +L T+YLE NP
Sbjct:   301 FWMNDNLLESWSDLDE-LKGAR-SLETVYLERNP 332

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q3T0W4 PPP1R7 "Protein phosphatase 1 regulatory subunit 7" [Bos taurus (taxid:9913)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 97/274 (35%), Positives = 162/274 (59%)

Query:    38 DLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
             D++++    +  ++DL   R+  ++     L  +K L LRQNLI    IE +   + L  
Sbjct:    68 DMETISLDRDAEDVDLNHYRIGKIEG-FEVLKKVKTLCLRQNLIK--CIENL---EGLQS 121

Query:    98 LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
             L EL L DN++ +I ++    +L V D+SFN + +  G+  +T  LK+L++  N++ K+E
Sbjct:   122 LRELDLYDNQIRRIENLDALTELEVLDISFNLLRNIEGIDKLT-RLKKLFLVNNKINKIE 180

Query:   158 EIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSN 216
              I   H LQ+LE GSNR+R +              G+N+I K+ NL  L  +  +S+QSN
Sbjct:   181 NISSLHQLQMLELGSNRIRAIENIDTLTNLESLFLGKNKITKLQNLDALTNLTVLSMQSN 240

Query:   217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
             RLT ++G +  + L ELYLSHNGI  +EGL     L +LD++SN++  ++++ +L+ L++
Sbjct:   241 RLTKIEGLQSLVNLRELYLSHNGIEVIEGLDNNNKLTMLDIASNRIKKIENVSHLTELQE 300

Query:   277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
              W+NDN ++    + E + G+R +L T+YLE NP
Sbjct:   301 FWMNDNLLDCWSDLDE-LKGAR-SLETVYLERNP 332

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-051113-288 ppp1r7 "protein phosphatase 1, regulatory (inhibitor) subunit 7" [Danio rerio (taxid:7955)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 102/313 (32%), Positives = 173/313 (55%)

Query:     1 MDMDGEKQPSAEATNPDQAV--EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRL 58
             +D  GE + S +     +++  E+D       +      D+D++       ++DL   R+
Sbjct:    14 VDRRGESEESGDDETKRKSLNGEVDSLQAPSTVPEESPVDMDTITLDPEEEDVDLVHCRI 73

Query:    59 TSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFK 118
               ++  +  L   K +SLRQNLI     + I   ++L  L EL L DN++ K+ ++    
Sbjct:    74 GKIEG-LEVLLKAKTISLRQNLI-----KRIENLESLVSLRELDLYDNQIRKLENLQALT 127

Query:   119 KLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM 178
             +L   DVSFN +    GL ++T  +K+L++  N++  +  ++H   LQ+LE GSNR+RV+
Sbjct:   128 ELEQLDVSFNLLRKIEGLDSLTK-VKKLFLLHNKIASIANLDHLTSLQMLELGSNRIRVI 186

Query:   179 XXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSH 237
                           G N+I ++ NL GL  +  +S+QSNR+T ++G +  + L ELYLSH
Sbjct:   187 ENLDSLSSLESLFLGTNKITQLQNLDGLHNLTVLSIQSNRITKLEGLQNLVNLRELYLSH 246

Query:   238 NGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGS 297
             NGI  MEGL     L  LD+++N++  +++I +L+ L++ W+NDNQIE+   + E    +
Sbjct:   247 NGIEVMEGLENNKKLSTLDIAANRIKKIENISHLTDLKEFWMNDNQIENWADLDELK--N 304

Query:   298 RETLTTIYLENNP 310
              + L T+YLE NP
Sbjct:   305 AKGLETVYLERNP 317

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

SGD|S000001676 SDS22 "Regulatory subunit of the type 1 protein phosphatase (PP1) Glc7p" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
 Identities = 103/278 (37%), Positives = 161/278 (57%)

Query:    43 EFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
             + P ++  +DL   ++ SL D  +    NLK+L LRQNLI+  +   +   D +  L+  
Sbjct:    39 DLPDDVEVIDLVHLKIKSLEDLNLYRFKNLKQLCLRQNLIESISEVEVLPHDKIVDLD-- 96

Query:   102 ILRDNKLMKIP-DVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
                DNK+  I  +V+   KL+  D+SFN+I     L N+TD L+ LY  +N + K+E + 
Sbjct:    97 -FYDNKIKHISSNVNKLTKLTSLDLSFNKIKHIKNLENLTD-LENLYFVQNSISKIENLS 154

Query:   161 HFHDLQILEFGSNRLRVMXXXXXXXXXXXXXX--GRNRI-KVVNLCGLKCIKKISLQSNR 217
                 L+ LE G N++  +                G+N I +++NL  LK +K +S+QSN+
Sbjct:   155 TLKSLKNLELGGNKVHSIEPDSFEGLSNLEEIWLGKNSIPRLINLHPLKNLKILSIQSNK 214

Query:   218 LTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDL 277
             L  ++  EE   LEELYLSHN I+K+EGL   + L  LDV+SNK+T ++++ +LS L D+
Sbjct:   215 LKKIENLEELTNLEELYLSHNFITKIEGLEKNLKLTTLDVTSNKITSLENLNHLSNLTDI 274

Query:   278 WLNDNQIE-SLESIVEAVAG-SRETLTTIYLENNPCKI 313
             W + N+I+ S ES+ E ++  SR  L TIYLE NP ++
Sbjct:   275 WASFNKIDQSFESLGENLSALSR--LETIYLEGNPIQL 310

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0071862 "protein phosphatase type 1 activator activity" evidence=IGI

GO:0051301 "cell division" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0051457 "maintenance of protein location in nucleus" evidence=IMP

GO:0000164 "protein phosphatase type 1 complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0007059 "chromosome segregation" evidence=IMP

GO:0004865 "protein serine/threonine phosphatase inhibitor activity" evidence=IGI;IMP

ASPGD|ASPL0000056701 AN10088 [Emericella nidulans (taxid:162425)]

 Score = 398 (145.2 bits), Expect = 4.9e-37, P = 4.9e-37
 Identities = 101/306 (33%), Positives = 169/306 (55%)

Query:     8 QPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPT-NLTELDLTANRLTS-LDSRI 65
             +P A  TNP+   + D S++          D D +E    ++ ++DL   R+ S L  R+
Sbjct:    14 EPKATITNPEALEDPDYSDSDAPPVEEIEADEDLLEDEDKDVEDIDLVHCRIHSILALRL 73

Query:    66 SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV 125
                + L++L LRQN I    + P S  + L   +EL L DN +  +  +  F  L+  D+
Sbjct:    74 ERFTKLQRLCLRQNQISRIEL-PSSLGETL---QELDLYDNLISHLKGLDDFHNLTSLDL 129

Query:   126 SFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXX 185
             SFN++     +S++   LK+LY  +N++ K+E +E   +++ LE G+N++R +       
Sbjct:   130 SFNKLKHIKNISHLVK-LKDLYFVQNKISKIEGLEGLTEIKNLELGANKIREIENLETLS 188

Query:   186 XXXXXXXGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME 244
                    G+N+I ++ NL  L  ++ +S+QSNRLTS+KG      LEELY+SHN I+ + 
Sbjct:   189 ALEELWLGKNKITEMKNLDALTNLRILSIQSNRLTSLKGLSSLKNLEELYVSHNAITDLA 248

Query:   245 GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTI 304
             GL +   L VLD S+N+++ ++ + +L  LE+LW ++NQ+ S    VE     +E L T+
Sbjct:   249 GLESNNALRVLDFSNNQVSKLEHLSHLKELEELWASNNQLSSFNE-VERELKDKENLKTV 307

Query:   305 YLENNP 310
             Y E NP
Sbjct:   308 YFEGNP 313

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0071862 "protein phosphatase type 1 activator activity" evidence=IEA

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IEA

UNIPROTKB|G4N707 MGG_03649 "Protein phosphatase 1 regulatory subunit SDS22" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 381 (139.2 bits), Expect = 3.1e-35, P = 3.1e-35
 Identities = 91/272 (33%), Positives = 154/272 (56%)

Query:    45 PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG-LEELI 102
             P +  EL+ T +R+ S+ S ++     +  L LRQN+I +  I+ ++    LAG L+EL 
Sbjct:    91 PLDTEELNATHSRIRSIPSLKLERFKQVVSLCLRQNVIQE--IDGLA---CLAGTLQELD 145

Query:   103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF 162
             L DN +  I  +   K L+  D+SFN+I     ++++T+ L +L+   N++  +E +E  
Sbjct:   146 LYDNLITHIKGLGELKALTWLDLSFNKIKRIENVNHLTE-LTDLFFVANKIRTIENLEGL 204

Query:   163 HDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRI-KVVNLCGLKCIKKISLQSNRLTSM 221
             + L++LE GSNR+R M               +N+I ++  L GL  ++ +S+QSNR+  +
Sbjct:   205 NKLRMLELGSNRIREMQNLDSLKELQELYVAKNKITQLTGLAGLPKLRLLSIQSNRIQDL 264

Query:   222 KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
                ++   LEELY++HN ++ +EGL   +NL VLDVS+N+++ +  +  L  L D W + 
Sbjct:   265 SPLKDVHTLEELYITHNALTSLEGLEHNINLKVLDVSNNQISSLKGLGPLKELTDFWASY 324

Query:   282 NQIESLESIVEAVAGSRETLTTIYLENNPCKI 313
             NQI      VE     +E L T+YLE NP ++
Sbjct:   325 NQIADFAE-VEKELKDKENLETVYLEGNPLQL 355

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P45969	YNZ9_CAEEL	No assigned EC number	0.3288	0.8151	0.8251	yes	no
Q54Q39	PP1R7_DICDI	No assigned EC number	0.4329	0.8272	0.8125	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	330
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	5e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	6e-05
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	8e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	5e-04
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.001
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.0 bits (145), Expect = 4e-10
 Identities = 65/261 (24%), Positives = 103/261 (39%), Gaps = 9/261 (3%)

Query: 35  QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94
               L        L+   L+ + ++SLD   + L+ L   SL  NL        IS    
Sbjct: 57  NTLLLLPSSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRL--RSNISELLE 114

Query: 95  LAGLEELILRDNKLMKIPDVSIF--KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNE 152
           L  L  L L +N +  IP +       L   D+S N+I S          LK L +S N+
Sbjct: 115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174

Query: 153 VPKMEEIEHFH-DLQILEFGSNRLRVMENLQN-LTNLQELWLGRNRIKVVNLCGLKCIK- 209
           +  + ++     +L  L+   N++  +      L+ L+EL L  N I  +          
Sbjct: 175 LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNL 234

Query: 210 -KISLQSNRLT-SMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDD 267
             + L +N+L    +       LE L LS+N IS +  L +L NL  LD+S N L+    
Sbjct: 235 SGLELSNNKLEDLPESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALP 294

Query: 268 IQNLSRLEDLWLNDNQIESLE 288
           +  L  L    L +  +    
Sbjct: 295 LIALLLLLLELLLNLLLTLKA 315

Length = 394

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 48.0 bits (114), Expect = 3e-06
 Identities = 49/175 (28%), Positives = 81/175 (46%), Gaps = 6/175 (3%)

Query: 25  SNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83
           +   LDL+  ++  L S +    NL  LDL+ N L+ L   +S+LSNL  L L  N I D
Sbjct: 141 NLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISD 200

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDT 142
             + P    + L+ LEEL L +N ++++   +S  K LS  ++S N++            
Sbjct: 201 --LPPEI--ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN 256

Query: 143 LKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
           L+ L +S N++  +  +    +L+ L+   N L     L  L  L    L    +
Sbjct: 257 LETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLL 311

Length = 394

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 59/258 (22%), Positives = 94/258 (36%), Gaps = 56/258 (21%)

Query: 68  LSNLKKLSLRQNLIDDAAIEPI-SRWDALAGLEELILRDNKLMKIPDV-----SIFKK-- 119
           L  L+ L L  N + + A + + S       L+EL L  N+  +IP           K  
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81

Query: 120 -LSVFDVSFNEIT--SSHGLSNVT--DTLKELYVSKNEVPKMEE-------IEHFHDLQI 167
            L   D+S N +       L ++    +L+EL ++ N +             +    L+ 
Sbjct: 82  GLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEK 141

Query: 168 LEFGSNRL------RVMENLQNLTNLQELWLGRNRIKV-------VNLCGLKCIKKISLQ 214
           L  G NRL       + + L+   +L+EL L  N I           L     ++ + L 
Sbjct: 142 LVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLN 201

Query: 215 SNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVD-------D 267
           +N LT     E   AL E             L++L +L VL++  N LT           
Sbjct: 202 NNGLTD----EGASALAE------------TLASLKSLEVLNLGDNNLTDAGAAALASAL 245

Query: 268 IQNLSRLEDLWLNDNQIE 285
           +     L  L L+ N I 
Sbjct: 246 LSPNISLLTLSLSCNDIT 263

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 5e-05
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 47  NLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
           NL  LDL+ NRLT +       L NLK L L  N +    I P +    L  L  L L  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTS--ISPEAFSG-LPSLRSLDLSG 57

Query: 106 NKL 108
           N L
Sbjct: 58  NNL 60

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.4 bits (93), Expect = 6e-05
 Identities = 16/40 (40%), Positives = 25/40 (62%)

Query: 251 NLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI 290
           NL  LD+S+N++T +  + NL  LE L L+ N+I  L  +
Sbjct: 2   NLETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPL 41

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 39.0 bits (92), Expect = 8e-05
 Identities = 19/41 (46%), Positives = 26/41 (63%)

Query: 230 LEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQN 270
           LE L LS+N I+ +  LS L NL  LD+S NK+T +  + N
Sbjct: 3   LETLDLSNNQITDLPPLSNLPNLETLDLSGNKITDLSPLSN 43

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.8 bits (98), Expect = 5e-04
 Identities = 73/304 (24%), Positives = 127/304 (41%), Gaps = 46/304 (15%)

Query: 46  TNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
             L  LDL+ N L+  +   +  L NL+ L L  N         ++   +L  L+ L L 
Sbjct: 284 QKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT---SLPRLQVLQLW 340

Query: 105 DNKLM-KIP-DVSIFKKLSVFDVSFNEITSS--HGLSNVTDTLKELYVS---KNEVPK-- 155
            NK   +IP ++     L+V D+S N +T     GL +  +  K +  S   + E+PK  
Sbjct: 341 SNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSL 400

Query: 156 -----MEEI------------EHFHDLQILEF---GSNRL--RVMENLQNLTNLQELWLG 193
                +  +              F  L ++ F    +N L  R+     ++ +LQ L L 
Sbjct: 401 GACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460

Query: 194 RNRI--KVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLS 247
           RN+    + +  G K ++ + L  N+ +    +       L +L LS N +S    + LS
Sbjct: 461 RNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELS 520

Query: 248 TLVNLHVLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305
           +   L  LD+S N+L+  +      +  L  L L+ NQ   L   +    G+ E+L  + 
Sbjct: 521 SCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ---LSGEIPKNLGNVESLVQVN 577

Query: 306 LENN 309
           + +N
Sbjct: 578 ISHN 581

Length = 968

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.0 bits (94), Expect = 9e-04
 Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 26/177 (14%)

Query: 161 HFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKIS------LQ 214
                +          +++ L     LQEL L  N +       L+ + + S      L 
Sbjct: 57  CLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLN 116

Query: 215 SNRLTSM------KGFEECI-ALEELYLSHNGISK--MEGLSTLV----NLHVLDVSSNK 261
           +N L         KG ++   ALE+L L  N +     E L+  +    +L  L++++N 
Sbjct: 117 NNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG 176

Query: 262 L------TLVDDIQNLSRLEDLWLNDNQIESLE-SIVEAVAGSRETLTTIYLENNPC 311
           +       L + ++    LE L LN+N +     S +     S ++L  + L +N  
Sbjct: 177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNL 233

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.8 bits (86), Expect = 9e-04
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 186 NLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGI 240
           NL+ L L  NR+ V+      GL  +K + L  N LTS+  + F    +L  L LS N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 5/59 (8%)

Query: 165 LQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRL 218
           L+ L+  +NRL V+ +   + L NL+ L L  N +  ++     GL  ++ + L  N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 54/196 (27%), Positives = 94/196 (47%), Gaps = 36/196 (18%)

Query: 44  FPTNLTELDLTANRLTSL-------------DSRISHL----SNLKKLSLRQNLIDDAAI 86
            P  L  L+++ N+LTSL              + ++HL    S L KL +  N +    +
Sbjct: 240 LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV 299

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDV-SIFKKLSVFDVSFNEITSSHGLSNVTDTLKE 145
            P        GL+EL + DN+L  +P + S   KL  ++   N++TS   L  +   L+E
Sbjct: 300 LP-------PGLQELSVSDNQLASLPALPSELCKLWAYN---NQLTS---LPTLPSGLQE 346

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGL 205
           L VS N++  +  +    +L  L   +NRL  +  L   + L+EL +  NR+  + +   
Sbjct: 347 LSVSDNQLASLPTLP--SELYKLWAYNNRLTSLPALP--SGLKELIVSGNRLTSLPVLPS 402

Query: 206 KCIKKISLQSNRLTSM 221
           + +K++ +  NRLTS+
Sbjct: 403 E-LKELMVSGNRLTSL 417

Length = 788

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 39.3 bits (92), Expect = 0.002
 Identities = 33/127 (25%), Positives = 52/127 (40%), Gaps = 18/127 (14%)

Query: 45  PTNLTELDLTANRLTSLDSR-----ISHLSNLKKLSLRQNLIDDAAIEPISR-WDALAGL 98
           P  L +L L  NRL           +    +LK+L+L  N I DA I  ++    A   L
Sbjct: 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNL 195

Query: 99  EELILRDNKLMKIPDVSI------FKKLSVFDVSFNEITS------SHGLSNVTDTLKEL 146
           E L L +N L      ++       K L V ++  N +T       +  L +   +L  L
Sbjct: 196 EVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL 255

Query: 147 YVSKNEV 153
            +S N++
Sbjct: 256 SLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83
          TNL  LDL+ N++T L   +S+L NL+ L L  N I D
Sbjct: 1  TNLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITD 37

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 230 LEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQI 284
           L+ L LS+N ++ +       L NL VLD+S N LT +       L  L  L L+ N +
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	330
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.94
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.93
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.88
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.88
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.84
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.83
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.8
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.79
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.77
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.76
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.76
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.71
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.68
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.68
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.46
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.46
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.42
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.39
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.38
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.38
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.33
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.25
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	99.24
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.17
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.14
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.09
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.96
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.89
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.88
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.76
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.74
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.69
KOG4341	483	consensus F-box protein containing LRR [General fu	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.57
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.48
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.44
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.41
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.38
KOG2123	388	consensus Uncharacterized conserved protein [Funct	98.37
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
PLN03150	623	hypothetical protein; Provisional	98.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.26
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.26
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.22
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.15
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.14
KOG4341	483	consensus F-box protein containing LRR [General fu	98.14
PLN03150	623	hypothetical protein; Provisional	98.14
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.03
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.84
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.79
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.65
PRK15386	426	type III secretion protein GogB; Provisional	97.61
PRK15386	426	type III secretion protein GogB; Provisional	97.51
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.41
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.36
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.67
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.64
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.03
KOG4308	478	consensus LRR-containing protein [Function unknown	96.02
KOG4308	478	consensus LRR-containing protein [Function unknown	95.52
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.06
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.41
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	94.19
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.01
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.21
smart00370	26	LRR Leucine-rich repeats, outliers.	90.17
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	90.17
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	87.77
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	85.54
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.94
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	81.97
KOG4242	553	consensus Predicted myosin-I-binding protein [Cell	80.67

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=2e-30  Score=225.88  Aligned_cols=298  Identities=24%  Similarity=0.345  Sum_probs=185.6

Q ss_pred             cccCCCcEEeccCcccccCCCCCCC-CCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCC
Q 020161           21 EIDLSNTVLDLTSFQLHDLDSVEFP-TNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (330)
Q Consensus        21 ~~~~~l~~l~l~~~~l~~~~~~~~~-~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L   98 (330)
                      ...++++++++..|.+..+|+.+.. .+|+.|++.+|.|.++.. .+..++.|+.|+++.|.++.+   ....|..-.++
T Consensus        99 ~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i---~~~sfp~~~ni  175 (873)
T KOG4194|consen   99 YNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEI---PKPSFPAKVNI  175 (873)
T ss_pred             hcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcc---cCCCCCCCCCc
Confidence            3456677777777777777765554 347777777777776654 366777777777777777665   33344444567


Q ss_pred             cEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCc
Q 020161           99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSN  173 (330)
Q Consensus        99 ~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~  173 (330)
                      ++|+|++|.|+.+..  |..+.+|..|.+++|+++.++...+. +++|+.|++..|.+...  -.|..+++|+.+.+..|
T Consensus       176 ~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN  255 (873)
T KOG4194|consen  176 KKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN  255 (873)
T ss_pred             eEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhc
Confidence            777777777776543  55566777777777777777665555 67777777777655442  23444555555555555


Q ss_pred             ccccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--
Q 020161          174 RLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--  244 (330)
Q Consensus       174 ~~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--  244 (330)
                      .+..+  ..|..+.++++|+++.|++..+   .+.++.+|+.|+++.|.|...  ..|..++.|+.|++++|.++.++  
T Consensus       256 ~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~  335 (873)
T KOG4194|consen  256 DISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEG  335 (873)
T ss_pred             CcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChh
Confidence            44322  1233444555555555544443   344444555555555544443  34455555555555555544431  


Q ss_pred             ------------------------CCCCCCCCCEEEcCCCCCCCc-----cccccCCCCCeEeCCCCCCCchHHHHHHHh
Q 020161          245 ------------------------GLSTLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESLESIVEAVA  295 (330)
Q Consensus       245 ------------------------~~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  295 (330)
                                              .|.++++|++|+|++|.++..     ..+..+++|+.|.+.+|+++.|+   ..++
T Consensus       336 sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~---krAf  412 (873)
T KOG4194|consen  336 SFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIP---KRAF  412 (873)
T ss_pred             HHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecc---hhhh
Confidence                                    355667778888888776533     34666888888888888888665   5677


Q ss_pred             ccccccchhhccCCCccccccccccccCC
Q 020161          296 GSRETLTTIYLENNPCKIFKLFCYPQTNF  324 (330)
Q Consensus       296 ~~~~~L~~l~l~~n~~~~~~~~~~~~~~~  324 (330)
                      ..++.|+.|+|.+|++.++..-.|.+.++
T Consensus       413 sgl~~LE~LdL~~NaiaSIq~nAFe~m~L  441 (873)
T KOG4194|consen  413 SGLEALEHLDLGDNAIASIQPNAFEPMEL  441 (873)
T ss_pred             ccCcccceecCCCCcceeecccccccchh
Confidence            88888888888888887777666655544

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.96  E-value=1.5e-30  Score=226.67  Aligned_cols=299  Identities=21%  Similarity=0.297  Sum_probs=250.2

Q ss_pred             ccccccCCCcEEeccCcccccCCCCCCC--CCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcc
Q 020161           18 QAVEIDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDA   94 (330)
Q Consensus        18 ~~~~~~~~l~~l~l~~~~l~~~~~~~~~--~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   94 (330)
                      +.....+.++.+|++.|.++.++.-.|+  .++++|++++|.|+.+.. .|..+.+|..|.+++|.++..   +...|++
T Consensus       143 e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittL---p~r~Fk~  219 (873)
T KOG4194|consen  143 EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTL---PQRSFKR  219 (873)
T ss_pred             HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccccc---CHHHhhh
Confidence            4455678899999999999999877777  479999999999998866 488889999999999999886   4556788


Q ss_pred             cCCCcEEEccCCcCcCCC--CCCCCCcccEEEccCCCCcCcccccc-ccCCCcEEEccCCCCCCc--ccccCCCCccEEE
Q 020161           95 LAGLEELILRDNKLMKIP--DVSIFKKLSVFDVSFNEITSSHGLSN-VTDTLKELYVSKNEVPKM--EEIEHFHDLQILE  169 (330)
Q Consensus        95 ~~~L~~L~l~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~  169 (330)
                      +++|+.|+|..|.+.-+.  .|..+++|+.|.+..|++..+....+ .+.+++.|+++.|.++..  .++.++.+|+.|+
T Consensus       220 L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~  299 (873)
T KOG4194|consen  220 LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLD  299 (873)
T ss_pred             cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhc
Confidence            999999999999887554  37889999999999999988775544 489999999999988874  5678899999999


Q ss_pred             cCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC
Q 020161          170 FGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK  242 (330)
Q Consensus       170 l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~  242 (330)
                      +++|.++  .++....+++|++|+++.|.++..   .|..+..|+.|+++.|.++.+  ..+....+|+.|+++.|.++.
T Consensus       300 lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~  379 (873)
T KOG4194|consen  300 LSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSW  379 (873)
T ss_pred             cchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEE
Confidence            9999986  346678889999999999988877   677888999999999999887  568899999999999999875


Q ss_pred             C-----cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          243 M-----EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       243 ~-----~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      .     ..+.++++|+.|.+.+|++..+  ..+..++.|++|||.+|.|.+|-   +.++..+ .|+.|-+..-.+.++.
T Consensus       380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq---~nAFe~m-~Lk~Lv~nSssflCDC  455 (873)
T KOG4194|consen  380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQ---PNAFEPM-ELKELVMNSSSFLCDC  455 (873)
T ss_pred             EEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeec---ccccccc-hhhhhhhcccceEEec
Confidence            3     3578899999999999999988  67889999999999999999664   6778888 8999888766655554


Q ss_pred             cccccccC
Q 020161          316 LFCYPQTN  323 (330)
Q Consensus       316 ~~~~~~~~  323 (330)
                      ...|...|
T Consensus       456 ql~Wl~qW  463 (873)
T KOG4194|consen  456 QLKWLAQW  463 (873)
T ss_pred             cHHHHHHH
Confidence            44444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.94  E-value=9.9e-26  Score=223.46  Aligned_cols=239  Identities=26%  Similarity=0.287  Sum_probs=139.1

Q ss_pred             ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCC-ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      ...++++|+++++.+.+..+...+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|   ..+..+++|++
T Consensus       116 ~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~L~~  192 (968)
T PLN00113        116 TSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP---NSLTNLTSLEF  192 (968)
T ss_pred             cCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC---hhhhhCcCCCe
Confidence            34455555555555554333344566666666666665 455556677777777777776665432   23455667777


Q ss_pred             EEccCCcCcC-CCC-CCCCCcccEEEccCCCCcCc-cccccccCCCcEEEccCCCCCC--cccccCCCCccEEEcCCccc
Q 020161          101 LILRDNKLMK-IPD-VSIFKKLSVFDVSFNEITSS-HGLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNRL  175 (330)
Q Consensus       101 L~l~~~~l~~-~~~-~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~~~  175 (330)
                      |++++|.+.+ +|. +..+++|++|++++|.+.+. +.....+++|+.|++++|.+.+  +..+..+++|+.|++++|.+
T Consensus       193 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  272 (968)
T PLN00113        193 LTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL  272 (968)
T ss_pred             eeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence            7777766653 343 56666777777777666542 2223345667777777666554  23456666677777766665


Q ss_pred             c--ccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC-C-cCC
Q 020161          176 R--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-M-EGL  246 (330)
Q Consensus       176 ~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~-~-~~~  246 (330)
                      .  .+..+..+++|+.|++++|.+.+.   .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+ + ..+
T Consensus       273 ~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l  352 (968)
T PLN00113        273 SGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNL  352 (968)
T ss_pred             eccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHH
Confidence            3  334455666666666666665433   345556666666666665543  234455666666666666553 2 234


Q ss_pred             CCCCCCCEEEcCCCCCC
Q 020161          247 STLVNLHVLDVSSNKLT  263 (330)
Q Consensus       247 ~~~~~L~~L~l~~n~~~  263 (330)
                      ..+++|+.|++++|+++
T Consensus       353 ~~~~~L~~L~Ls~n~l~  369 (968)
T PLN00113        353 GKHNNLTVLDLSTNNLT  369 (968)
T ss_pred             hCCCCCcEEECCCCeeE
Confidence            44555555666555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.93  E-value=1.1e-24  Score=215.99  Aligned_cols=289  Identities=22%  Similarity=0.237  Sum_probs=157.7

Q ss_pred             ccccccCCCcEEeccCcccccC-C-CCCCCCCcCEEecCCCCCC-ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcc
Q 020161           18 QAVEIDLSNTVLDLTSFQLHDL-D-SVEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA   94 (330)
Q Consensus        18 ~~~~~~~~l~~l~l~~~~l~~~-~-~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~   94 (330)
                      ..+....++++|+++++.+.+. | .+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+.   .+..
T Consensus       230 ~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~---~~~~  306 (968)
T PLN00113        230 YEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPE---LVIQ  306 (968)
T ss_pred             hhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCCh---hHcC
Confidence            3344556777788777776643 2 2334567777777777666 4555666677777777777666554322   2344


Q ss_pred             cCCCcEEEccCCcCcC-CCC-CCCCCcccEEEccCCCCcCcc-ccccccCCCcEEEccCCCC------------------
Q 020161           95 LAGLEELILRDNKLMK-IPD-VSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNEV------------------  153 (330)
Q Consensus        95 ~~~L~~L~l~~~~l~~-~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~------------------  153 (330)
                      +++|++|++++|.+.+ +|. +..+++|+.|++++|.+.+.. .....+++|+.|++++|.+                  
T Consensus       307 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~  386 (968)
T PLN00113        307 LQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLI  386 (968)
T ss_pred             CCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEE
Confidence            5566666666665543 222 445555555555555554322 1122234444444444433                  


Q ss_pred             ------CC--cccccCCCCccEEEcCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCcc------------
Q 020161          154 ------PK--MEEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCI------------  208 (330)
Q Consensus       154 ------~~--~~~~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L------------  208 (330)
                            .+  +..+..+++|+.|++++|.++  .+..+..++.|+.|++++|.+.+.   .+..+++|            
T Consensus       387 l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~  466 (968)
T PLN00113        387 LFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFG  466 (968)
T ss_pred             CcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeee
Confidence                  22  122344555556666555543  223344555555555555544432   12233444            


Q ss_pred             -----------cEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccC
Q 020161          209 -----------KKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNL  271 (330)
Q Consensus       209 -----------~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~  271 (330)
                                 +.|++++|.+++.  ..+..++.|+.|++++|.+.+.  +.+..+++|+.|++++|.+++.  ..+..+
T Consensus       467 ~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l  546 (968)
T PLN00113        467 GLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEM  546 (968)
T ss_pred             ecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCc
Confidence                       4444444444333  1234455566666666655542  2455666777777777777655  456667


Q ss_pred             CCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161          272 SRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK  312 (330)
Q Consensus       272 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~  312 (330)
                      ++|+.|++++|++..   .++..+..+++|+.+++++|++.
T Consensus       547 ~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~l~ls~N~l~  584 (968)
T PLN00113        547 PVLSQLDLSQNQLSG---EIPKNLGNVESLVQVNISHNHLH  584 (968)
T ss_pred             ccCCEEECCCCcccc---cCChhHhcCcccCEEeccCCcce
Confidence            777777777777662   22344556677777777777754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=1.5e-25  Score=197.34  Aligned_cols=295  Identities=25%  Similarity=0.329  Sum_probs=161.1

Q ss_pred             CCcccccccCCCcEEeccCcccccCC-CCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhc
Q 020161           15 NPDQAVEIDLSNTVLDLTSFQLHDLD-SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWD   93 (330)
Q Consensus        15 ~~~~~~~~~~~l~~l~l~~~~l~~~~-~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   93 (330)
                      .++..+..+.+.+.|.+.+.++..+| .+..+.+|++|++++|++.++...+..+|.|+.+.+..|.+.....  +..+.
T Consensus        23 ~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGi--P~diF  100 (1255)
T KOG0444|consen   23 RFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGI--PTDIF  100 (1255)
T ss_pred             cCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCC--Cchhc
Confidence            35666666777777777777776665 2344556666666666665555555555555555555554443321  12333


Q ss_pred             ccCCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCCCCCCc-ccccCCCCccEEEc
Q 020161           94 ALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEVPKM-EEIEHFHDLQILEF  170 (330)
Q Consensus        94 ~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l  170 (330)
                      .+..|+.|+++.|++..+|. +....++-.|++++|.+..++...+. +..|-.|++++|.+..+ +....+..|+.|.+
T Consensus       101 ~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L  180 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL  180 (1255)
T ss_pred             ccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence            44555555555555555553 44445555555555555544433222 33444445555544442 23334444444444


Q ss_pred             CCcccc---------------------------ccccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCccccc
Q 020161          171 GSNRLR---------------------------VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSM  221 (330)
Q Consensus       171 ~~~~~~---------------------------~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~  221 (330)
                      ++|++.                           .+.++..+.+|..++++.|.+..+  .+....+|+.|++++|+++..
T Consensus       181 s~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL  260 (1255)
T KOG0444|consen  181 SNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITEL  260 (1255)
T ss_pred             CCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeee
Confidence            444332                           233444455566666666665555  344556666666666666655


Q ss_pred             -cccccccccceEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCC--Cc-cccccCCCCCeEeCCCCCCCchHHHHHHHhc
Q 020161          222 -KGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLT--LV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAG  296 (330)
Q Consensus       222 -~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~--~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~  296 (330)
                       .......+|++|+++.|+++.+| .+..+++|+.|-+.+|+++  ++ +.++.+.+|+.+...+|.+.-+|    .-+-
T Consensus       261 ~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVP----Eglc  336 (1255)
T KOG0444|consen  261 NMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVP----EGLC  336 (1255)
T ss_pred             eccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCc----hhhh
Confidence             23344566666666666666654 3556666666666666554  33 44555555566565555554332    3355


Q ss_pred             cccccchhhccCCCccccc
Q 020161          297 SRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       297 ~~~~L~~l~l~~n~~~~~~  315 (330)
                      +|++|++|.|+.|++..++
T Consensus       337 RC~kL~kL~L~~NrLiTLP  355 (1255)
T KOG0444|consen  337 RCVKLQKLKLDHNRLITLP  355 (1255)
T ss_pred             hhHHHHHhcccccceeech
Confidence            6777777777777765543

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.88  E-value=1.1e-21  Score=183.59  Aligned_cols=260  Identities=28%  Similarity=0.286  Sum_probs=193.6

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      .....|+++++.+..+|. .++++|+.|++++|+++.+|.   ..++|++|++++|.++... .      ..++|+.|++
T Consensus       201 ~~~~~LdLs~~~LtsLP~-~l~~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~LtsLP-~------lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLP-V------LPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCCcCCc-chhcCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCccc-C------cccccceeec
Confidence            456788999999998886 556789999999999998875   3588999999999888642 1      1367889999


Q ss_pred             cCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccC
Q 020161          104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN  183 (330)
Q Consensus       104 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~  183 (330)
                      ++|.++.+|.  ...+|+.|++++|++..++.   .+++|+.|++++|.+..+..+  ...|+.|++++|.++.++.+. 
T Consensus       270 s~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~---~p~~L~~LdLS~N~L~~Lp~l--p~~L~~L~Ls~N~L~~LP~lp-  341 (788)
T PRK15387        270 FSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV---LPPGLQELSVSDNQLASLPAL--PSELCKLWAYNNQLTSLPTLP-  341 (788)
T ss_pred             cCCchhhhhh--chhhcCEEECcCCccccccc---cccccceeECCCCccccCCCC--cccccccccccCccccccccc-
Confidence            9888887775  23578888898888887664   246788999988888775432  345777888888876544322 


Q ss_pred             CCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 020161          184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT  263 (330)
Q Consensus       184 ~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~  263 (330)
                       ..|+.|++++|.+...+. ...++..|++++|.++..+..  +..|+.|++++|.+++++..  .++|+.|++++|+++
T Consensus       342 -~~Lq~LdLS~N~Ls~LP~-lp~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~Ls  415 (788)
T PRK15387        342 -SGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLT  415 (788)
T ss_pred             -cccceEecCCCccCCCCC-CCcccceehhhccccccCccc--ccccceEEecCCcccCCCCc--ccCCCEEEccCCcCC
Confidence             468888888888876532 245788888888888877643  35788888888888877643  357888888888888


Q ss_pred             CccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161          264 LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       264 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      .++.+  ..+|+.|++++|+++.+|..    +.++++|+.|+|++|++.+.
T Consensus       416 sIP~l--~~~L~~L~Ls~NqLt~LP~s----l~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        416 SLPML--PSGLLSLSVYRNQLTRLPES----LIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             CCCcc--hhhhhhhhhccCcccccChH----HhhccCCCeEECCCCCCCch
Confidence            77532  34677888888888876532    45678888888888887654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.88  E-value=9.3e-25  Score=192.47  Aligned_cols=284  Identities=23%  Similarity=0.308  Sum_probs=200.7

Q ss_pred             cccccCCCcEEeccCcccccC-CCCCCCCCcCEEecCCCCCC--ChhhhhhcCCCCCEEeCCCCcCCccccccchhhccc
Q 020161           19 AVEIDLSNTVLDLTSFQLHDL-DSVEFPTNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL   95 (330)
Q Consensus        19 ~~~~~~~l~~l~l~~~~l~~~-~~~~~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   95 (330)
                      .....-+++.|.++.|++.++ ..+.-++.|+.+.++.|++.  ++|..+.++..|++|++++|++...    +..+..-
T Consensus        50 EL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev----P~~LE~A  125 (1255)
T KOG0444|consen   50 ELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV----PTNLEYA  125 (1255)
T ss_pred             HHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhc----chhhhhh
Confidence            333445566666666665553 33445566666666666555  5666666666666666666665552    2233444


Q ss_pred             CCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCC--------------------
Q 020161           96 AGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEV--------------------  153 (330)
Q Consensus        96 ~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~--------------------  153 (330)
                      +++-.|++++|+|..||.  +-+++.|-+|++++|++..+++....+..|+.|.+++|.+                    
T Consensus       126 Kn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  126 KNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS  205 (1255)
T ss_pred             cCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence            555666666666666654  4445555566666665555555444444445555555432                    


Q ss_pred             ----CC---cccccCCCCccEEEcCCcccc-ccccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCcccccc-
Q 020161          154 ----PK---MEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK-  222 (330)
Q Consensus       154 ----~~---~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~-  222 (330)
                          +-   +..+..+.+|..++++.|.+. .++.+..+++|+.|++++|.++..  ....+.++++|+++.|+++..| 
T Consensus       206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~  285 (1255)
T KOG0444|consen  206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPD  285 (1255)
T ss_pred             cccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchH
Confidence                21   233556678888899988886 556788899999999999999987  5567789999999999999996 


Q ss_pred             ccccccccceEEccCCCCC--CCc-CCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccc
Q 020161          223 GFEECIALEELYLSHNGIS--KME-GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR  298 (330)
Q Consensus       223 ~~~~~~~L~~l~l~~~~~~--~~~-~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  298 (330)
                      .+-+++.|+.|...+|+++  ++| ++..+..|+++..++|.+.-. +.+..|.+|+.|.|+.|.+.++|+.    +.-+
T Consensus       286 avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPea----IHlL  361 (1255)
T KOG0444|consen  286 AVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEA----IHLL  361 (1255)
T ss_pred             HHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhh----hhhc
Confidence            4667899999999998765  554 577888999999999999877 7789999999999999999988754    3446


Q ss_pred             cccchhhccCCC
Q 020161          299 ETLTTIYLENNP  310 (330)
Q Consensus       299 ~~L~~l~l~~n~  310 (330)
                      +.|++||+.+|+
T Consensus       362 ~~l~vLDlreNp  373 (1255)
T KOG0444|consen  362 PDLKVLDLRENP  373 (1255)
T ss_pred             CCcceeeccCCc
Confidence            889999999998

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.84  E-value=6.8e-20  Score=171.66  Aligned_cols=238  Identities=27%  Similarity=0.340  Sum_probs=195.2

Q ss_pred             cCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      ..+++.|++.+|++..+|.  .+++|++|++++|.++++|..   .++|+.|++++|.+....     .  ..+.|+.|+
T Consensus       221 ~~~L~~L~L~~N~Lt~LP~--lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~L~~Lp-----~--lp~~L~~L~  288 (788)
T PRK15387        221 PAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNPLTHLP-----A--LPSGLCKLW  288 (788)
T ss_pred             hcCCCEEEccCCcCCCCCC--CCCCCcEEEecCCccCcccCc---ccccceeeccCCchhhhh-----h--chhhcCEEE
Confidence            3578999999999999885  478999999999999998753   468999999999887631     1  236789999


Q ss_pred             ccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccccccc
Q 020161          103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQ  182 (330)
Q Consensus       103 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~  182 (330)
                      +++|.++.+|.  ..++|+.|++++|.+..++..   ..+|..|++.+|.+..++.+  ..+|+.|++++|.++.++.+ 
T Consensus       289 Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~LP~l-  360 (788)
T PRK15387        289 IFGNQLTSLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLTSLPTL--PSGLQELSVSDNQLASLPTL-  360 (788)
T ss_pred             CcCCccccccc--cccccceeECCCCccccCCCC---cccccccccccCcccccccc--ccccceEecCCCccCCCCCC-
Confidence            99999998885  347899999999999887653   45688899999998775432  25899999999998765443 


Q ss_pred             CCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCC
Q 020161          183 NLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL  262 (330)
Q Consensus       183 ~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~  262 (330)
                       .+.|+.|++++|.+...+- ...+|+.|++++|.++..+..  .+.|+.|++++|.++.+|.+  ..+|+.|++++|++
T Consensus       361 -p~~L~~L~Ls~N~L~~LP~-l~~~L~~LdLs~N~Lt~LP~l--~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqL  434 (788)
T PRK15387        361 -PSELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTSLPVL--PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQL  434 (788)
T ss_pred             -CcccceehhhccccccCcc-cccccceEEecCCcccCCCCc--ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCcc
Confidence             3578899999999887632 236799999999999987653  47899999999999988754  35789999999999


Q ss_pred             CCc-cccccCCCCCeEeCCCCCCCc
Q 020161          263 TLV-DDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       263 ~~~-~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      +.+ ..+..+++|+.|++++|+++.
T Consensus       435 t~LP~sl~~L~~L~~LdLs~N~Ls~  459 (788)
T PRK15387        435 TRLPESLIHLSSETTVNLEGNPLSE  459 (788)
T ss_pred             cccChHHhhccCCCeEECCCCCCCc
Confidence            988 567889999999999999994

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.83  E-value=6.6e-24  Score=177.80  Aligned_cols=261  Identities=28%  Similarity=0.403  Sum_probs=218.7

Q ss_pred             CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEEE
Q 020161           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFD  124 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~  124 (330)
                      ..++.+.+++|.+..+...+..+..|.++++++|+.+.    .+++++.+..+..++.+.+.+..+|+ +....++++++
T Consensus        45 v~l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~----lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   45 VDLQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQ----LPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLD  120 (565)
T ss_pred             cchhhhhhccCchhhccHhhhcccceeEEEeccchhhh----CCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhh
Confidence            57889999999999888888999999999999998887    44556677888889999999998886 78888999999


Q ss_pred             ccCCCCcCccccccccCCCcEEEccCCCCCC-cccccCCCCccEEEcCCcccc-ccccccCCCCCcEEECcCCCcccc--
Q 020161          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLGRNRIKVV--  200 (330)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~--  200 (330)
                      ++.|.+..+++..+.+..++.++..+|.+.. +.++..+.++..+++.+|++. .++....++.|+++++..|.++..  
T Consensus       121 ~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~  200 (565)
T KOG0472|consen  121 CSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPP  200 (565)
T ss_pred             ccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCCh
Confidence            9999998888877778888889888888877 466778888888899888875 444555588899999988887776  


Q ss_pred             ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeE
Q 020161          201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDL  277 (330)
Q Consensus       201 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L  277 (330)
                      .++++.+|+-|.+..|++...|.|..|..|.++.+..|.+.-++  ..++++++.+|+++.|+++.. +.+.-+.+|++|
T Consensus       201 ~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL  280 (565)
T KOG0472|consen  201 ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL  280 (565)
T ss_pred             hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhh
Confidence            78888899999999999999999999999999999999888774  467888999999999999988 667778889999


Q ss_pred             eCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          278 WLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       278 ~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      |+++|.|+.++    .-++++ +|+.|-+.|||++.+.
T Consensus       281 DlSNN~is~Lp----~sLgnl-hL~~L~leGNPlrTiR  313 (565)
T KOG0472|consen  281 DLSNNDISSLP----YSLGNL-HLKFLALEGNPLRTIR  313 (565)
T ss_pred             cccCCccccCC----cccccc-eeeehhhcCCchHHHH
Confidence            99999998765    335666 7999999999976654

>PLN03210 Resistant to P

Probab=99.83  E-value=9.6e-19  Score=174.79  Aligned_cols=277  Identities=19%  Similarity=0.220  Sum_probs=172.6

Q ss_pred             cccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        21 ~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      ..+.+++.|++.++.+..+|....+.+|++|+++++.+..++..+..+++|+.|+++++.....    ++.+..+++|++
T Consensus       586 ~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~----ip~ls~l~~Le~  661 (1153)
T PLN03210        586 YLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKE----IPDLSMATNLET  661 (1153)
T ss_pred             hcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCc----CCccccCCcccE
Confidence            3456788888888888888876667899999999999888888788899999999988754332    234566788999


Q ss_pred             EEccCC-cCcCCCC-CCCCCcccEEEccCCC-CcCccccccccCCCcEEEccCCCCCC-cccccCCCCccEEEcCCcccc
Q 020161          101 LILRDN-KLMKIPD-VSIFKKLSVFDVSFNE-ITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRLR  176 (330)
Q Consensus       101 L~l~~~-~l~~~~~-~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~  176 (330)
                      |++++| .+..+|. +..+++|+.|++++|. +..++.. ..+.+|+.|++++|.... +.  ....+|+.|+++++.+.
T Consensus       662 L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~~n~i~  738 (1153)
T PLN03210        662 LKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-INLKSLYRLNLSGCSRLKSFP--DISTNISWLDLDETAIE  738 (1153)
T ss_pred             EEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-CCCCCCCEEeCCCCCCccccc--cccCCcCeeecCCCccc
Confidence            999887 4556765 7788888888888864 4444432 246778888888774322 11  12346677777776654


Q ss_pred             ccccccCC-------------------------------CCCcEEECcCCCccc-c--ccCCCCcccEEECCCC-ccccc
Q 020161          177 VMENLQNL-------------------------------TNLQELWLGRNRIKV-V--NLCGLKCIKKISLQSN-RLTSM  221 (330)
Q Consensus       177 ~~~~l~~~-------------------------------~~L~~L~l~~~~i~~-~--~~~~~~~L~~L~l~~~-~l~~~  221 (330)
                      .++....+                               ++|+.|++++|.... .  .+..+++|+.|++++| .+...
T Consensus       739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L  818 (1153)
T PLN03210        739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL  818 (1153)
T ss_pred             cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence            32221122                               345555555543211 1  3445556666666654 34444


Q ss_pred             cccccccccceEEccCCCC-CCCcCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCC-CCchHHHHHHHhccc
Q 020161          222 KGFEECIALEELYLSHNGI-SKMEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQ-IESLESIVEAVAGSR  298 (330)
Q Consensus       222 ~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~  298 (330)
                      |....+++|+.|++++|.. ..++..  ..+|+.|++++|.++.+ ..+..+++|+.|++++|+ ++.++    .....+
T Consensus       819 P~~~~L~sL~~L~Ls~c~~L~~~p~~--~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~----~~~~~L  892 (1153)
T PLN03210        819 PTGINLESLESLDLSGCSRLRTFPDI--STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVS----LNISKL  892 (1153)
T ss_pred             CCCCCccccCEEECCCCCcccccccc--ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccC----cccccc
Confidence            4333455666666665532 222221  24666777777776666 345667777777777743 44432    123455


Q ss_pred             cccchhhccCCC
Q 020161          299 ETLTTIYLENNP  310 (330)
Q Consensus       299 ~~L~~l~l~~n~  310 (330)
                      ++|+.+++++|.
T Consensus       893 ~~L~~L~l~~C~  904 (1153)
T PLN03210        893 KHLETVDFSDCG  904 (1153)
T ss_pred             cCCCeeecCCCc
Confidence            666666666654

syringae 6; Provisional

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.80  E-value=4.7e-19  Score=166.86  Aligned_cols=246  Identities=19%  Similarity=0.222  Sum_probs=158.7

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      .+..+|++++.+++.+|. ..++.++.|++++|.++++|..+.  ++|+.|++++|.+... |.   .+  .+.|+.|++
T Consensus       178 ~~~~~L~L~~~~LtsLP~-~Ip~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsL-P~---~l--~~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTTIPA-CIPEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSI-PA---TL--PDTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCcCCc-ccccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccC-Ch---hh--hccccEEEC
Confidence            456788888888888875 457789999999999998887653  5899999999988753 21   11  257889999


Q ss_pred             cCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccC
Q 020161          104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN  183 (330)
Q Consensus       104 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~  183 (330)
                      ++|.+..+|.. ...+|+.|++++|++..++..  .+.+|+.|++++|.+..+... -..+|+.|++++|.++.++. .-
T Consensus       249 s~N~L~~LP~~-l~s~L~~L~Ls~N~L~~LP~~--l~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~Ls~N~Lt~LP~-~l  323 (754)
T PRK15370        249 SINRITELPER-LPSALQSLDLFHNKISCLPEN--LPEELRYLSVYDNSIRTLPAH-LPSGITHLNVQSNSLTALPE-TL  323 (754)
T ss_pred             cCCccCcCChh-HhCCCCEEECcCCccCccccc--cCCCCcEEECCCCccccCccc-chhhHHHHHhcCCccccCCc-cc
Confidence            99988888751 235788999998888766542  235788888888877664321 12356777777776653321 11


Q ss_pred             CCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 020161          184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT  263 (330)
Q Consensus       184 ~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~  263 (330)
                      .++|+.|++++|.+...+-.-+++|+.|++++|+++..|.. -++.|+.|++++|.++.++.-. ...|+.|++++|+++
T Consensus       324 ~~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~L~~LP~~-lp~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~L~  401 (754)
T PRK15370        324 PPGLKTLEAGENALTSLPASLPPELQVLDVSKNQITVLPET-LPPTITTLDVSRNALTNLPENL-PAALQIMQASRNNLV  401 (754)
T ss_pred             cccceeccccCCccccCChhhcCcccEEECCCCCCCcCChh-hcCCcCEEECCCCcCCCCCHhH-HHHHHHHhhccCCcc
Confidence            24667777777666555333335666777776666655421 1356666666666666554211 124666666666666


Q ss_pred             Ccc-----ccccCCCCCeEeCCCCCCC
Q 020161          264 LVD-----DIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       264 ~~~-----~~~~~~~L~~L~l~~n~l~  285 (330)
                      .++     .....+.+..+++.+|++.
T Consensus       402 ~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        402 RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            541     1223355666666666665

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.79  E-value=4.7e-21  Score=175.69  Aligned_cols=286  Identities=26%  Similarity=0.277  Sum_probs=228.8

Q ss_pred             ccccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCC
Q 020161           18 QAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG   97 (330)
Q Consensus        18 ~~~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   97 (330)
                      +.....++++.|+...+.++.......+.++++++++.+.++.+|..+..+.+|+.++..+|.++.    .+..+...+.
T Consensus       213 ~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~----lp~ri~~~~~  288 (1081)
T KOG0618|consen  213 ELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVA----LPLRISRITS  288 (1081)
T ss_pred             eEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHh----hHHHHhhhhh
Confidence            333445666666666666666555667789999999999999999889999999999999999965    3344566789


Q ss_pred             CcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccc--cCCCcEEEccCCCCCCcccc--cCCCCccEEEcCC
Q 020161           98 LEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNV--TDTLKELYVSKNEVPKMEEI--EHFHDLQILEFGS  172 (330)
Q Consensus        98 L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~  172 (330)
                      |+.|.+..|.+..+|+ .....+|++|++..|.+..++.....  ...++.++.+.+.+......  ...+.|+.|.+.+
T Consensus       289 L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan  368 (1081)
T KOG0618|consen  289 LVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN  368 (1081)
T ss_pred             HHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc
Confidence            9999999999999987 55599999999999999988875433  33467777777777664322  3456788899999


Q ss_pred             cccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc-ccccccccceEEccCCCCCCCcCC
Q 020161          173 NRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEGL  246 (330)
Q Consensus       173 ~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~~  246 (330)
                      |.++  .++-+.+..+|+.|+++.|++..+   .+..++.|+.|++++|+++.++ .+..|..|++|....|.+..+|.+
T Consensus       369 N~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe~  448 (1081)
T KOG0618|consen  369 NHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPEL  448 (1081)
T ss_pred             CcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechhh
Confidence            9885  446678889999999999988766   6788889999999999999985 577899999999999999999999


Q ss_pred             CCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161          247 STLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       247 ~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~  310 (330)
                      ..++.|+.+|++.|+++..  +.....++|++||+++|.-...+   ...++.+.++..++++-++
T Consensus       449 ~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d---~~~l~~l~~l~~~~i~~~~  511 (1081)
T KOG0618|consen  449 AQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFD---HKTLKVLKSLSQMDITLNN  511 (1081)
T ss_pred             hhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccc---hhhhHHhhhhhheecccCC
Confidence            9999999999999999876  32223389999999999855443   3446667778887777763

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.77  E-value=3.4e-21  Score=161.27  Aligned_cols=292  Identities=21%  Similarity=0.266  Sum_probs=204.7

Q ss_pred             cEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161           27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (330)
Q Consensus        27 ~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  105 (330)
                      -..++++..+..+|. ..|+..+++.+..|+|++||+. |+.+++|+.|++++|.|+.+.   ..+|..+++|..|.+.+
T Consensus        49 ~~VdCr~~GL~eVP~-~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~---p~AF~GL~~l~~Lvlyg  124 (498)
T KOG4237|consen   49 GIVDCRGKGLTEVPA-NLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA---PDAFKGLASLLSLVLYG  124 (498)
T ss_pred             ceEEccCCCcccCcc-cCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcC---hHhhhhhHhhhHHHhhc
Confidence            556778888888886 7889999999999999999985 999999999999999999984   45777888888887766


Q ss_pred             -CcCcCCCC--CCCCCcccEEEccCCCCcCcccccc-ccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccc-c--
Q 020161          106 -NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSN-VTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRL-R--  176 (330)
Q Consensus       106 -~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~-~--  176 (330)
                       |+|+.+|.  +..+.+++.|.+.-|++..+..... .++.+..|.+..|.+..+.  .+..+..++.+.+..|.+ .  
T Consensus       125 ~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC  204 (498)
T KOG4237|consen  125 NNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC  204 (498)
T ss_pred             CCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence             89999885  8888999999999998887765433 3788888888888777652  466777777777766552 1  


Q ss_pred             cc-----------ccccCCCCCcEEECcCCCccccccCCC-CcccEE---ECCCC-ccccc--cccccccccceEEccCC
Q 020161          177 VM-----------ENLQNLTNLQELWLGRNRIKVVNLCGL-KCIKKI---SLQSN-RLTSM--KGFEECIALEELYLSHN  238 (330)
Q Consensus       177 ~~-----------~~l~~~~~L~~L~l~~~~i~~~~~~~~-~~L~~L---~l~~~-~l~~~--~~~~~~~~L~~l~l~~~  238 (330)
                      .+           ..++.........+...++.....+.+ .+++.+   -.+.+ .....  ..+..+++|+.+++++|
T Consensus       205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN  284 (498)
T KOG4237|consen  205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN  284 (498)
T ss_pred             ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence            00           011111111111111111211110000 011111   11112 11111  23677888888888888


Q ss_pred             CCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161          239 GISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       239 ~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      .++.+  .+|.+.+.+++|.+..|++..+  ..+..+..|+.|+|.+|+|+.+.   +.++....+|..|.+-.||+.+.
T Consensus       285 ~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~---~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  285 KITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVA---PGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             ccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEe---cccccccceeeeeehccCcccCc
Confidence            88887  3678888888899988888877  66788888888999999988654   56677778888888888888777


Q ss_pred             ccccccccCCC
Q 020161          315 KLFCYPQTNFP  325 (330)
Q Consensus       315 ~~~~~~~~~~p  325 (330)
                      ....|...|+-
T Consensus       362 C~l~wl~~Wlr  372 (498)
T KOG4237|consen  362 CRLAWLGEWLR  372 (498)
T ss_pred             cchHHHHHHHh
Confidence            77777766654

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.76  E-value=1.2e-21  Score=164.33  Aligned_cols=260  Identities=25%  Similarity=0.331  Sum_probs=216.9

Q ss_pred             CcEEeccCcccccC-CCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161           26 NTVLDLTSFQLHDL-DSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (330)
Q Consensus        26 l~~l~l~~~~l~~~-~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  104 (330)
                      +..+.++.+.+..+ +.+..+..++++++.+|++..+|+.++.+..++.++.+.|++..    .+.+++....+.+++++
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~----lp~~i~s~~~l~~l~~s  122 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSE----LPEQIGSLISLVKLDCS  122 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhh----ccHHHhhhhhhhhhhcc
Confidence            56677777777665 45566788999999999999999999999999999999998877    34566778889999999


Q ss_pred             CCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccc-ccccc
Q 020161          105 DNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLR-VMENL  181 (330)
Q Consensus       105 ~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~-~~~~l  181 (330)
                      .+.+..+++ ++.+-.+..++..+|.+...++....+.++..+++.+|.+... ...-.++.|++++...|-++ .++.+
T Consensus       123 ~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~l  202 (565)
T KOG0472|consen  123 SNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPEL  202 (565)
T ss_pred             ccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhh
Confidence            998888775 8888888899999999988888777788888899998887773 33444888899998888875 56788


Q ss_pred             cCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc-CCCCCCCCCEEEc
Q 020161          182 QNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME-GLSTLVNLHVLDV  257 (330)
Q Consensus       182 ~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l  257 (330)
                      +.+.+|..|++..|.+... .|.+|+.|..+.++.|++...+  ...+++++..+|+++|++.++| ...-+.+|.+|++
T Consensus       203 g~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDl  282 (565)
T KOG0472|consen  203 GGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDL  282 (565)
T ss_pred             cchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcc
Confidence            8899999999999998887 8889999999999999988875  3567889999999999999975 4667788999999


Q ss_pred             CCCCCCCc-cccccCCCCCeEeCCCCCCCchHHH
Q 020161          258 SSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESI  290 (330)
Q Consensus       258 ~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~  290 (330)
                      |+|.++.+ ..++++ +|+.|.+.+|++.++-..
T Consensus       283 SNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~  315 (565)
T KOG0472|consen  283 SNNDISSLPYSLGNL-HLKFLALEGNPLRTIRRE  315 (565)
T ss_pred             cCCccccCCcccccc-eeeehhhcCCchHHHHHH
Confidence            99999999 668888 999999999999987543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.76  E-value=3.8e-20  Score=169.83  Aligned_cols=283  Identities=28%  Similarity=0.397  Sum_probs=165.5

Q ss_pred             CCcEEeccCcccccCCC-CCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           25 SNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~-~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      .++.||++++++..+|. +...++|+.|+++.|.|.+.|.+...+++|+++.+.+|....    .+..+..+++|++|++
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~----lP~~~~~lknl~~Ldl  121 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQS----LPASISELKNLQYLDL  121 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhc----CchhHHhhhccccccc
Confidence            37888888888777763 444566666666666666666666666666666666665554    2334455666666666


Q ss_pred             cCCcCcCCCC-CCCCC----------------------------------------cccE-EEccCCCCcCc--------
Q 020161          104 RDNKLMKIPD-VSIFK----------------------------------------KLSV-FDVSFNEITSS--------  133 (330)
Q Consensus       104 ~~~~l~~~~~-~~~~~----------------------------------------~L~~-L~l~~~~~~~~--------  133 (330)
                      +.|.+..+|. +..+.                                        .+++ +++..|.+...        
T Consensus       122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l  201 (1081)
T KOG0618|consen  122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANL  201 (1081)
T ss_pred             chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccch
Confidence            6666655442 11111                                        1222 33333333200        


Q ss_pred             ----------cccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc-ccccccCCCCCcEEECcCCCcccc--
Q 020161          134 ----------HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLGRNRIKVV--  200 (330)
Q Consensus       134 ----------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~--  200 (330)
                                ..+....++++.|+...|.++.........++++++++.+.+. .++.+..+.+|+.++...|.+...  
T Consensus       202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~  281 (1081)
T KOG0618|consen  202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPL  281 (1081)
T ss_pred             hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecccchhHHhhHH
Confidence                      0001112334444444444443333344456777777776664 334456667777777666654332  


Q ss_pred             -----------------------ccCCCCcccEEECCCCccccccc--c-------------------------cccccc
Q 020161          201 -----------------------NLCGLKCIKKISLQSNRLTSMKG--F-------------------------EECIAL  230 (330)
Q Consensus       201 -----------------------~~~~~~~L~~L~l~~~~l~~~~~--~-------------------------~~~~~L  230 (330)
                                             ...+..+|++|++..|++...|.  +                         ...+.|
T Consensus       282 ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~L  361 (1081)
T KOG0618|consen  282 RISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAAL  361 (1081)
T ss_pred             HHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHH
Confidence                                   23345667777777776654421  0                         012235


Q ss_pred             ceEEccCCCCCC--CcCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhc
Q 020161          231 EELYLSHNGISK--MEGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL  306 (330)
Q Consensus       231 ~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l  306 (330)
                      +.|++.+|.+++  +|.+.+.++|++|++++|++..+  ..+.+++.|++|+|++|+++.+++.    +..|+.|+.|..
T Consensus       362 q~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~t----va~~~~L~tL~a  437 (1081)
T KOG0618|consen  362 QELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDT----VANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHH----HHhhhhhHHHhh
Confidence            555666666665  35667778888888888888766  4567778888888888888877533    445677888888


Q ss_pred             cCCCccccc
Q 020161          307 ENNPCKIFK  315 (330)
Q Consensus       307 ~~n~~~~~~  315 (330)
                      .+|.+...+
T Consensus       438 hsN~l~~fP  446 (1081)
T KOG0618|consen  438 HSNQLLSFP  446 (1081)
T ss_pred             cCCceeech
Confidence            888776654

>PLN03210 Resistant to P

Probab=99.74  E-value=2.1e-16  Score=158.22  Aligned_cols=253  Identities=21%  Similarity=0.233  Sum_probs=161.7

Q ss_pred             cCCCcEEeccCcccccCCC-CCCCCCcCEEecCCCC-CCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           23 DLSNTVLDLTSFQLHDLDS-VEFPTNLTELDLTANR-LTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~-~~~~~~L~~L~l~~~~-i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      ..++++|++.++.+..++. ...+++|+.|+++++. +..+|. +..+++|+.|++++|......|   ..+..+++|+.
T Consensus       610 ~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp---~si~~L~~L~~  685 (1153)
T PLN03210        610 PENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELP---SSIQYLNKLED  685 (1153)
T ss_pred             ccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccc---hhhhccCCCCE
Confidence            3566777777666666542 3345667777776653 444543 5566667777776654333322   23445666666


Q ss_pred             EEccCC-cCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCccc---------------------
Q 020161          101 LILRDN-KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE---------------------  158 (330)
Q Consensus       101 L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---------------------  158 (330)
                      |++++| .+..+|....+++|++|++++|......+  ....+|+.|++.++.+..++.                     
T Consensus       686 L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p--~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~  763 (1153)
T PLN03210        686 LDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP--DISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLW  763 (1153)
T ss_pred             EeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc--cccCCcCeeecCCCccccccccccccccccccccccchhhcc
Confidence            666665 45555543355666666666653221111  113345555555554333211                     


Q ss_pred             ----------ccCCCCccEEEcCCccc--cccccccCCCCCcEEECcCCC-cccc-ccCCCCcccEEECCCCc-cccccc
Q 020161          159 ----------IEHFHDLQILEFGSNRL--RVMENLQNLTNLQELWLGRNR-IKVV-NLCGLKCIKKISLQSNR-LTSMKG  223 (330)
Q Consensus       159 ----------~~~~~~L~~L~l~~~~~--~~~~~l~~~~~L~~L~l~~~~-i~~~-~~~~~~~L~~L~l~~~~-l~~~~~  223 (330)
                                ...+++|+.|++++|..  ..+..++++++|+.|++++|. +... ....+++|+.|++++|. +...+.
T Consensus       764 ~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        764 ERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             ccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccc
Confidence                      12235788888887753  355678899999999999874 4444 22367899999999884 443333


Q ss_pred             cccccccceEEccCCCCCCCc-CCCCCCCCCEEEcCCC-CCCCc-cccccCCCCCeEeCCCCC
Q 020161          224 FEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSN-KLTLV-DDIQNLSRLEDLWLNDNQ  283 (330)
Q Consensus       224 ~~~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~L~~L~l~~n~  283 (330)
                      .  ..+++.|++++|.++.+| ++..+++|+.|++++| +++.+ .....+++|+.+++++|.
T Consensus       844 ~--~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        844 I--STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             c--ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            2  468999999999999876 5778899999999996 56666 456778899999999996

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.71  E-value=2.7e-17  Score=143.26  Aligned_cols=249  Identities=23%  Similarity=0.263  Sum_probs=144.1

Q ss_pred             CCcCEEecCCCCCC-----ChhhhhhcCCCCCEEeCCCCcCCc--cccc-cchhhcccCCCcEEEccCCcCcCC-CC-CC
Q 020161           46 TNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDD--AAIE-PISRWDALAGLEELILRDNKLMKI-PD-VS  115 (330)
Q Consensus        46 ~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~--~~~~-~~~~~~~~~~L~~L~l~~~~l~~~-~~-~~  115 (330)
                      +.|++++++++.++     .++..+...++|+.++++++.+..  .... ....+..+++|++|++++|.+... +. +.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            45777777777764     234445566677777777766552  1000 012344466777777776666521 11 11


Q ss_pred             CC---CcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCC-CCccEEEcCCcccc------ccccccCCC
Q 020161          116 IF---KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF-HDLQILEFGSNRLR------VMENLQNLT  185 (330)
Q Consensus       116 ~~---~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~L~~L~l~~~~~~------~~~~l~~~~  185 (330)
                      .+   ++|++|++++|++........                 ...+..+ ++|+.+++++|.++      ....+..++
T Consensus       103 ~l~~~~~L~~L~ls~~~~~~~~~~~l-----------------~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~  165 (319)
T cd00116         103 SLLRSSSLQELKLNNNGLGDRGLRLL-----------------AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANR  165 (319)
T ss_pred             HHhccCcccEEEeeCCccchHHHHHH-----------------HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCC
Confidence            12   336666666655442100000                 0112233 45555555555543      112234455


Q ss_pred             CCcEEECcCCCcccc-------ccCCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC--cC----C
Q 020161          186 NLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM--EG----L  246 (330)
Q Consensus       186 ~L~~L~l~~~~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~--~~----~  246 (330)
                      +|++|++++|.+.+.       .+...++|+.|++++|.+++.      ..+..++.|+.|++++|.+++.  ..    +
T Consensus       166 ~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~  245 (319)
T cd00116         166 DLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL  245 (319)
T ss_pred             CcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH
Confidence            666666666665532       233445677777777766543      2345677888888888887752  11    1


Q ss_pred             -CCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCchHH-HHHHHhccc-cccchhhccCCCc
Q 020161          247 -STLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLES-IVEAVAGSR-ETLTTIYLENNPC  311 (330)
Q Consensus       247 -~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~-~~L~~l~l~~n~~  311 (330)
                       ...+.|+.|++++|.+++.      ..+..+++|+++++++|.+++.+. ....++... +.|+.+++.+|++
T Consensus       246 ~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  319 (319)
T cd00116         246 LSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF  319 (319)
T ss_pred             hccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence             1347899999999998743      345566889999999999996533 233445555 7899999988874

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.68  E-value=3.1e-16  Score=147.94  Aligned_cols=227  Identities=24%  Similarity=0.259  Sum_probs=178.3

Q ss_pred             ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161           22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  101 (330)
                      +...++.|++++|.+..+|. ..+++|++|++++|.++++|..+.  ++|+.|++++|.+... |.   .+  ..+|+.|
T Consensus       197 Ip~~L~~L~Ls~N~LtsLP~-~l~~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~L-P~---~l--~s~L~~L  267 (754)
T PRK15370        197 IPEQITTLILDNNELKSLPE-NLQGNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITEL-PE---RL--PSALQSL  267 (754)
T ss_pred             cccCCcEEEecCCCCCcCCh-hhccCCCEEECCCCccccCChhhh--ccccEEECcCCccCcC-Ch---hH--hCCCCEE
Confidence            35689999999999999886 345799999999999999987653  4799999999998853 21   22  2579999


Q ss_pred             EccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccc-c
Q 020161          102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME-N  180 (330)
Q Consensus       102 ~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~  180 (330)
                      ++++|.++.+|.- -.++|++|++++|.+..++..  ...+|+.|++++|.+..+.. ...++|+.|++++|.++.++ .
T Consensus       268 ~Ls~N~L~~LP~~-l~~sL~~L~Ls~N~Lt~LP~~--lp~sL~~L~Ls~N~Lt~LP~-~l~~sL~~L~Ls~N~Lt~LP~~  343 (754)
T PRK15370        268 DLFHNKISCLPEN-LPEELRYLSVYDNSIRTLPAH--LPSGITHLNVQSNSLTALPE-TLPPGLKTLEAGENALTSLPAS  343 (754)
T ss_pred             ECcCCccCccccc-cCCCCcEEECCCCccccCccc--chhhHHHHHhcCCccccCCc-cccccceeccccCCccccCChh
Confidence            9999999988861 235899999999999877642  23578999999998887532 12368999999999886443 3


Q ss_pred             ccCCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcC-----CCCCCCCCEE
Q 020161          181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG-----LSTLVNLHVL  255 (330)
Q Consensus       181 l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~-----~~~~~~L~~L  255 (330)
                      +  .++|+.|++++|.+...+....++|+.|++++|.++..|.. -...|+.|++++|+++.++.     ....+.+..+
T Consensus       344 l--~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt~LP~~-l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L  420 (754)
T PRK15370        344 L--PPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPEN-LPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRI  420 (754)
T ss_pred             h--cCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCCCCCHh-HHHHHHHHhhccCCcccCchhHHHHhhcCCCccEE
Confidence            3  26899999999998866444457899999999999987542 23479999999999998753     2345789999


Q ss_pred             EcCCCCCCC
Q 020161          256 DVSSNKLTL  264 (330)
Q Consensus       256 ~l~~n~~~~  264 (330)
                      ++.+|+++.
T Consensus       421 ~L~~Npls~  429 (754)
T PRK15370        421 IVEYNPFSE  429 (754)
T ss_pred             EeeCCCccH
Confidence            999999874

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.68  E-value=7.3e-19  Score=147.42  Aligned_cols=275  Identities=23%  Similarity=0.291  Sum_probs=173.1

Q ss_pred             CCCCCCCCCCcccCCCcccccccCCCcEEeccCcccccCCCCCC--CCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCC
Q 020161            1 MDMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLR   77 (330)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~--~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~   77 (330)
                      |++++.++.+.-       ...++...++++..|.++.+|+..|  .++|+.|++++|.|+.|.+ .|.++++|..|-+.
T Consensus        51 VdCr~~GL~eVP-------~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly  123 (498)
T KOG4237|consen   51 VDCRGKGLTEVP-------ANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY  123 (498)
T ss_pred             EEccCCCcccCc-------ccCCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh
Confidence            345555554433       2345666889999999999998776  6899999999999998865 59999999887766


Q ss_pred             C-CcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCCCC
Q 020161           78 Q-NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEV  153 (330)
Q Consensus        78 ~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~  153 (330)
                      + |+|++.   +.+.|..+..++.|.+.-|++.-++.  +..++++..|.++.|.+..+...... ...++.+.+..|.+
T Consensus       124 g~NkI~~l---~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~  200 (498)
T KOG4237|consen  124 GNNKITDL---PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPF  200 (498)
T ss_pred             cCCchhhh---hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcc
Confidence            6 899987   55678889999999998888887654  78899999999999998877764333 66677777766653


Q ss_pred             CCcc--------------cccCCCCccEEEcCCccccccccccCCCCCcEE--EC-cCCCcccc----ccCCCCcccEEE
Q 020161          154 PKME--------------EIEHFHDLQILEFGSNRLRVMENLQNLTNLQEL--WL-GRNRIKVV----NLCGLKCIKKIS  212 (330)
Q Consensus       154 ~~~~--------------~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L--~l-~~~~i~~~----~~~~~~~L~~L~  212 (330)
                      ....              .++...-+.-..+.+.++...+.-.....++.+  .+ +.+.....    .|..+++|++++
T Consensus       201 icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~ln  280 (498)
T KOG4237|consen  201 ICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLN  280 (498)
T ss_pred             ccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEec
Confidence            2210              111111111111111111111000000011111  01 11111111    466667777777


Q ss_pred             CCCCccccc--cccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCC
Q 020161          213 LQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       213 l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~  285 (330)
                      +++|+++.+  ..|.....+++|.+..|++..+.  .|.++..|+.|++.+|+|+.+  ..+.....|..|++-.|++-
T Consensus       281 lsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  281 LSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             cCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            777777666  35666677777777777766653  356666777777777777655  44555566666666666544

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.64  E-value=2e-16  Score=137.77  Aligned_cols=255  Identities=24%  Similarity=0.278  Sum_probs=154.7

Q ss_pred             CCCcccccccCCCcEEeccCcccccC-----C-CCCCCCCcCEEecCCCCCCC-------hhhhhhcCCCCCEEeCCCCc
Q 020161           14 TNPDQAVEIDLSNTVLDLTSFQLHDL-----D-SVEFPTNLTELDLTANRLTS-------LDSRISHLSNLKKLSLRQNL   80 (330)
Q Consensus        14 ~~~~~~~~~~~~l~~l~l~~~~l~~~-----~-~~~~~~~L~~L~l~~~~i~~-------l~~~~~~l~~L~~L~l~~~~   80 (330)
                      ..+...+.....+++++++++.+...     + .+...+++++++++++.+..       ++..+..+++|+.|++++|.
T Consensus        13 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~   92 (319)
T cd00116          13 ERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA   92 (319)
T ss_pred             cchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence            34666677777799999999988442     2 23445779999999997763       23346789999999999999


Q ss_pred             CCccccccchhhcccCCCcEEEccCCcCcC-----CC-CCCCC-CcccEEEccCCCCcCcc-----ccccccCCCcEEEc
Q 020161           81 IDDAAIEPISRWDALAGLEELILRDNKLMK-----IP-DVSIF-KKLSVFDVSFNEITSSH-----GLSNVTDTLKELYV  148 (330)
Q Consensus        81 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~-~~~~~-~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l  148 (330)
                      +....+..+..+...+.|++|++++|.+..     +. .+..+ ++|+.+++++|.++...     .....+.+|+.|++
T Consensus        93 ~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l  172 (319)
T cd00116          93 LGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNL  172 (319)
T ss_pred             CChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEEC
Confidence            876433333332222559999999998873     11 13444 77888888888776311     11111344555555


Q ss_pred             cCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-------ccCCCCcccEEECCCCccccc
Q 020161          149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM  221 (330)
Q Consensus       149 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-------~~~~~~~L~~L~l~~~~l~~~  221 (330)
                      ++|.+.+... .               .....+...+.|+.|++++|.+.+.       .+..+++|+.|++++|.+++.
T Consensus       173 ~~n~l~~~~~-~---------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         173 ANNGIGDAGI-R---------------ALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             cCCCCchHHH-H---------------HHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            5555442000 0               0111223334555555555544322       234455666666666665542


Q ss_pred             c--cc-----ccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc------cccccC-CCCCeEeCCC
Q 020161          222 K--GF-----EECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV------DDIQNL-SRLEDLWLND  281 (330)
Q Consensus       222 ~--~~-----~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~------~~~~~~-~~L~~L~l~~  281 (330)
                      .  .+     ...+.|+.+++++|.+++.      ..+...++|+.+++++|.++..      ..+... +.|+++++.+
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            1  11     1236788888888877631      2344557888888888888755      233444 6788888887


Q ss_pred             CCC
Q 020161          282 NQI  284 (330)
Q Consensus       282 n~l  284 (330)
                      |++
T Consensus       317 ~~~  319 (319)
T cd00116         317 DSF  319 (319)
T ss_pred             CCC
Confidence            763

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.46  E-value=1.3e-15  Score=114.27  Aligned_cols=160  Identities=29%  Similarity=0.450  Sum_probs=131.0

Q ss_pred             ccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CC
Q 020161           37 HDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VS  115 (330)
Q Consensus        37 ~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~  115 (330)
                      ..++.+.-+++++.|.+|+|+++.+|+.+..+.+|+.|++.+|++..    .+.++.++++|++|++.-|.+..+|. ++
T Consensus        24 ~~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~----lp~~issl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   24 EELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE----LPTSISSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             hhcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh----cChhhhhchhhhheecchhhhhcCccccC
Confidence            33445555789999999999999999999999999999999999987    44567789999999999999888885 89


Q ss_pred             CCCcccEEEccCCCCcC--ccccccccCCCcEEEccCCCCCC-cccccCCCCccEEEcCCccc-cccccccCCCCCcEEE
Q 020161          116 IFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSNRL-RVMENLQNLTNLQELW  191 (330)
Q Consensus       116 ~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~-~~~~~l~~~~~L~~L~  191 (330)
                      .++.|..||+..|.+..  ++..++.+..|+.|+++.|.++- +..++.+.+|+.|.+..|.+ +.+..++.+..|++|.
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelh  179 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELH  179 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHh
Confidence            99999999999998874  44555558889999999998877 35688888888888887765 5667777778888888


Q ss_pred             CcCCCcccc
Q 020161          192 LGRNRIKVV  200 (330)
Q Consensus       192 l~~~~i~~~  200 (330)
                      +.+|++.-.
T Consensus       180 iqgnrl~vl  188 (264)
T KOG0617|consen  180 IQGNRLTVL  188 (264)
T ss_pred             cccceeeec
Confidence            777765443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.46  E-value=4.2e-14  Score=109.88  Aligned_cols=127  Identities=29%  Similarity=0.372  Sum_probs=53.0

Q ss_pred             ccccCCCCCcEEECcCCCcccc-ccC-CCCcccEEECCCCccccccccccccccceEEccCCCCCCCc-CC-CCCCCCCE
Q 020161          179 ENLQNLTNLQELWLGRNRIKVV-NLC-GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME-GL-STLVNLHV  254 (330)
Q Consensus       179 ~~l~~~~~L~~L~l~~~~i~~~-~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~-~~-~~~~~L~~  254 (330)
                      +.+.++.++++|++.++.+... .+. .+.+++.|++++|.++..+++..++.|++|++++|.++.+. .+ ..+++|++
T Consensus        13 ~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~   92 (175)
T PF14580_consen   13 AQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQE   92 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH-TT--E
T ss_pred             cccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHhCCcCCE
Confidence            3444555677777777777766 444 45678888888888888877888888888888888888874 34 35788888


Q ss_pred             EEcCCCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhh
Q 020161          255 LDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY  305 (330)
Q Consensus       255 L~l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~  305 (330)
                      |.+++|+|.++   ..+..+++|+.|++.+|+++..+..=..++..+|+|+.||
T Consensus        93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            88888888766   5667788999999999998876666667788889999865

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.42  E-value=6e-14  Score=114.43  Aligned_cols=134  Identities=27%  Similarity=0.323  Sum_probs=115.9

Q ss_pred             cccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCC-CCCCCCCEEE
Q 020161          180 NLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL-STLVNLHVLD  256 (330)
Q Consensus       180 ~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~-~~~~~L~~L~  256 (330)
                      .+..+..|+++|++.|.+..+  .++-.|.++.|+++.|.++....+..+++|+.|++++|.++.+.++ ..+.+++.|.
T Consensus       279 ~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~  358 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLK  358 (490)
T ss_pred             ecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeee
Confidence            345567889999999998877  6788899999999999999998899999999999999999988764 4677999999


Q ss_pred             cCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          257 VSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       257 l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      +++|.+.+++.+..+-+|..||+++|+|..+++  ..-++++|.|..+.|.+||+....
T Consensus       359 La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~lde--V~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  359 LAQNKIETLSGLRKLYSLVNLDLSSNQIEELDE--VNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhhhHhhhhhhHhhhhheeccccccchhhHHH--hcccccccHHHHHhhcCCCccccc
Confidence            999999999889999999999999999998754  345789999999999999976543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.39  E-value=3.6e-14  Score=117.77  Aligned_cols=109  Identities=23%  Similarity=0.266  Sum_probs=62.6

Q ss_pred             CCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc-----
Q 020161          203 CGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV-----  265 (330)
Q Consensus       203 ~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~-----  265 (330)
                      +..+.|+.+.+..|.+...      ..+..|++|+.|++.+|-++.-      +.++.+++|+++++++|.++.-     
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            3334455555554444332      2345666666666666666542      3456666777777777776644     


Q ss_pred             -c-ccccCCCCCeEeCCCCCCCchHH-HHHHHhccccccchhhccCCCc
Q 020161          266 -D-DIQNLSRLEDLWLNDNQIESLES-IVEAVAGSRETLTTIYLENNPC  311 (330)
Q Consensus       266 -~-~~~~~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~~L~~l~l~~n~~  311 (330)
                       . .-...|+|+.+.+.+|.|+.-++ .+.......|.|..|+|++|.+
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             1 11235677777777777774422 2222334467777777777776

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.38  E-value=5.3e-14  Score=126.50  Aligned_cols=266  Identities=40%  Similarity=0.600  Sum_probs=193.4

Q ss_pred             CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEE
Q 020161           45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF  123 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L  123 (330)
                      ++.++.++...+.+.........+..+..+.+..|.+...    ...+..+++|+.+++.+|.+..+.. +..+++|++|
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~l~~n~i~~~----~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L  123 (414)
T KOG0531|consen   48 PSDLEEIDLIFNLDGSDEDLVESLTSLKELNLRQNLIAKI----LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVL  123 (414)
T ss_pred             cchhhhhcchhccccchhhhHHHhHhHHhhccchhhhhhh----hcccccccceeeeeccccchhhcccchhhhhcchhe
Confidence            4455555555554432221113456666666777766651    2234567888888888888888877 7778888888


Q ss_pred             EccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccccc--ccCCCCCcEEECcCCCcccc-
Q 020161          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVV-  200 (330)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--l~~~~~L~~L~l~~~~i~~~-  200 (330)
                      ++++|.+..+.++... ..|+.|++.+|.+..+..+..+..|+.+++++|.+..+..  ...+.+++.+++..|.+... 
T Consensus       124 ~ls~N~I~~i~~l~~l-~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~  202 (414)
T KOG0531|consen  124 DLSFNKITKLEGLSTL-TLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIE  202 (414)
T ss_pred             eccccccccccchhhc-cchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhccc
Confidence            8888888877765443 3488888888888888888888889999999998876666  57788888899988887776 


Q ss_pred             ccCCCCcccEEECCCCccccccccccccc--cceEEccCCCCCCC-cCCCCCCCCCEEEcCCCCCCCccccccCCCCCeE
Q 020161          201 NLCGLKCIKKISLQSNRLTSMKGFEECIA--LEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDL  277 (330)
Q Consensus       201 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--L~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L  277 (330)
                      .+.....+..+++..|.++..........  |+.+++.++.+... ..+..+..+..++++.|++.....+...+.+..+
T Consensus       203 ~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~  282 (414)
T KOG0531|consen  203 GLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSEL  282 (414)
T ss_pred             chHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHh
Confidence            55666666666888888877765555555  88999999998887 7788888899999999998888777777788888


Q ss_pred             eCCCCCCCchHHHHHHH-hccccccchhhccCCCccccc
Q 020161          278 WLNDNQIESLESIVEAV-AGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       278 ~l~~n~l~~~~~~~~~~-~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      ....+++.........- ....+.++.+.+.+|+.....
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (414)
T KOG0531|consen  283 WLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS  321 (414)
T ss_pred             ccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence            88888877432222221 555688888888888865543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.38  E-value=1.2e-13  Score=107.35  Aligned_cols=132  Identities=28%  Similarity=0.450  Sum_probs=52.8

Q ss_pred             CCcccc-ccCCCCcccEEECCCCccccccccc-cccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc-ccc-cc
Q 020161          195 NRIKVV-NLCGLKCIKKISLQSNRLTSMKGFE-ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDI-QN  270 (330)
Q Consensus       195 ~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~-~~  270 (330)
                      +.+... .+..+.+++.|++.+|.++....+. .+..|+.|++++|.++.++++..+++|++|++++|+++.+ +.+ ..
T Consensus         7 ~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~~l~~~   86 (175)
T PF14580_consen    7 NMIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISEGLDKN   86 (175)
T ss_dssp             -----------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CHHHHHH
T ss_pred             cccccccccccccccccccccccccccccchhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccccchHHh
Confidence            334333 4455667899999999999987776 5789999999999999999999999999999999999998 444 46


Q ss_pred             CCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc-ccccccCCCCCC
Q 020161          271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL-FCYPQTNFPKYT  328 (330)
Q Consensus       271 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~-~~~~~~~~p~~~  328 (330)
                      +++|++|++++|+|.++.+.  ..+..+++|+.|++.+||+...+. ..+.-.++|.++
T Consensus        87 lp~L~~L~L~~N~I~~l~~l--~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk  143 (175)
T PF14580_consen   87 LPNLQELYLSNNKISDLNEL--EPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLK  143 (175)
T ss_dssp             -TT--EEE-TTS---SCCCC--GGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-S
T ss_pred             CCcCCEEECcCCcCCChHHh--HHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhh
Confidence            89999999999999987542  446789999999999999865543 445555566543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.34  E-value=3.4e-14  Score=106.66  Aligned_cols=178  Identities=22%  Similarity=0.408  Sum_probs=118.1

Q ss_pred             CCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc-ccccccCCCCCcE
Q 020161          111 IPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQE  189 (330)
Q Consensus       111 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~  189 (330)
                      ++.+..+..++.|.+++|++...++.                      ++.+.+|+.|++.+|.++ .+..++.+++|+.
T Consensus        26 ~~gLf~~s~ITrLtLSHNKl~~vppn----------------------ia~l~nlevln~~nnqie~lp~~issl~klr~   83 (264)
T KOG0617|consen   26 LPGLFNMSNITRLTLSHNKLTVVPPN----------------------IAELKNLEVLNLSNNQIEELPTSISSLPKLRI   83 (264)
T ss_pred             cccccchhhhhhhhcccCceeecCCc----------------------HHHhhhhhhhhcccchhhhcChhhhhchhhhh
Confidence            44444555566666666666555544                      444455555555555553 3345556666666


Q ss_pred             EECcCCCcccc--ccCCCCcccEEECCCCccccc---cccccccccceEEccCCCCCCC-cCCCCCCCCCEEEcCCCCCC
Q 020161          190 LWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLT  263 (330)
Q Consensus       190 L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~n~~~  263 (330)
                      |+++.|.+...  +|+.++.|+.|++..|++...   ..+-.+..|+.|++++|.+.-+ +.+..+.+|+.|.++.|.+-
T Consensus        84 lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll  163 (264)
T KOG0617|consen   84 LNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL  163 (264)
T ss_pred             eecchhhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh
Confidence            66666655443  666777777777777666544   2344567888889999988876 46888999999999999887


Q ss_pred             Cc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCc
Q 020161          264 LV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC  311 (330)
Q Consensus       264 ~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~  311 (330)
                      .+ ..++.+++|++|.+.+|+++.++..+.. +.-.-+-+.+...+||+
T Consensus       164 ~lpkeig~lt~lrelhiqgnrl~vlppel~~-l~l~~~k~v~r~E~NPw  211 (264)
T KOG0617|consen  164 SLPKEIGDLTRLRELHIQGNRLTVLPPELAN-LDLVGNKQVMRMEENPW  211 (264)
T ss_pred             hCcHHHHHHHHHHHHhcccceeeecChhhhh-hhhhhhHHHHhhhhCCC
Confidence            77 6688899999999999999988755433 23333344555667775

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.33  E-value=2.6e-13  Score=112.69  Aligned_cols=245  Identities=23%  Similarity=0.287  Sum_probs=149.5

Q ss_pred             CCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCc---CCccccccc----hhhcccCCCcEEEccCCcCcC--C
Q 020161           46 TNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNL---IDDAAIEPI----SRWDALAGLEELILRDNKLMK--I  111 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~---~~~~~~~~~----~~~~~~~~L~~L~l~~~~l~~--~  111 (330)
                      ..++.++++||.|..     +...+.+.++|+..++++-.   .....++.+    .++..+++|++++||.|.+..  +
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~  109 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI  109 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence            556677777776652     33345566677776666531   111111111    223445566666666666652  3


Q ss_pred             CC----CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccc------cccc
Q 020161          112 PD----VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV------MENL  181 (330)
Q Consensus       112 ~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~l  181 (330)
                      +.    +..+..|++|.+.+|.+...-...- -.-|..+..       ......-++|+.+.+++|++..      ...+
T Consensus       110 ~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l-~~al~~l~~-------~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~  181 (382)
T KOG1909|consen  110 RGLEELLSSCTDLEELYLNNCGLGPEAGGRL-GRALFELAV-------NKKAASKPKLRVFICGRNRLENGGATALAEAF  181 (382)
T ss_pred             HHHHHHHHhccCHHHHhhhcCCCChhHHHHH-HHHHHHHHH-------HhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence            32    3445556666665555543221100 000111100       0123455678888888887742      2346


Q ss_pred             cCCCCCcEEECcCCCcccc-------ccCCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC-----
Q 020161          182 QNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM-----  243 (330)
Q Consensus       182 ~~~~~L~~L~l~~~~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~-----  243 (330)
                      +..+.|+++.+.+|.|...       .+..+++|+.|++..|.++..      ..+..+++|+.+++.+|.+..-     
T Consensus       182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHH
Confidence            6778899999999877654       578889999999999988765      3466778999999999988752     


Q ss_pred             -cCC-CCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCchHHHHHHHhccc
Q 020161          244 -EGL-STLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR  298 (330)
Q Consensus       244 -~~~-~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  298 (330)
                       ..+ ...++|+++.+.+|.++.-      ..+...+.|..|+|++|.+..-+..+..+...+
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~e~de~i~ei~~~~  324 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLGEKDEGIDEIASKF  324 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccccccchhHHHHHHhc
Confidence             222 3468999999999998744      345567899999999999943333334444443

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.25  E-value=1.8e-12  Score=105.88  Aligned_cols=123  Identities=28%  Similarity=0.389  Sum_probs=59.7

Q ss_pred             CcEEEccCCCCCCcc-cccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-c-cCCCCcccEEECCCCccc
Q 020161          143 LKELYVSKNEVPKME-EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-N-LCGLKCIKKISLQSNRLT  219 (330)
Q Consensus       143 L~~L~l~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~-~~~~~~L~~L~l~~~~l~  219 (330)
                      |+.+++++|.+..++ ...-.++++.|+++.|++.....++.+++|+.||+++|.+... + -..+.++++|.+.+|.+.
T Consensus       286 LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE  365 (490)
T KOG1259|consen  286 LTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIE  365 (490)
T ss_pred             hhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHh
Confidence            445555555554432 2333455555555555555444455555555555555544443 1 122334455555555555


Q ss_pred             cccccccccccceEEccCCCCCCC---cCCCCCCCCCEEEcCCCCCCCc
Q 020161          220 SMKGFEECIALEELYLSHNGISKM---EGLSTLVNLHVLDVSSNKLTLV  265 (330)
Q Consensus       220 ~~~~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~  265 (330)
                      ...++.++-+|..|++++|+|..+   .++..+|.|+.+.+.+|++...
T Consensus       366 ~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  366 TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            444445555555555555555443   2344445555555555554443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=99.24  E-value=7.6e-13  Score=119.03  Aligned_cols=238  Identities=32%  Similarity=0.379  Sum_probs=171.7

Q ss_pred             CCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEE
Q 020161           44 FPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVF  123 (330)
Q Consensus        44 ~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L  123 (330)
                      .+..++.+++..+.+..+-..+..+.+|+.+++.+|.+..+..    .+..+++|++|++++|.|+.+.++..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~----~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIEN----LLSSLVNLQVLDLSFNKITKLEGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhccc----chhhhhcchheeccccccccccchhhccchhhh
Confidence            3566777777777777654456778888888888887776421    145678888888888888888777777778888


Q ss_pred             EccCCCCcCccccccccCCCcEEEccCCCCCCccc--ccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-
Q 020161          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-  200 (330)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-  200 (330)
                      ++.+|.+..+..... +..++.+++++|.+..+..  ...+.+++.+++.+|.+..+..+.....+..+.+..|.+... 
T Consensus       146 ~l~~N~i~~~~~~~~-l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~  224 (414)
T KOG0531|consen  146 NLSGNLISDISGLES-LKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLE  224 (414)
T ss_pred             eeccCcchhccCCcc-chhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceecc
Confidence            888888877665443 6777888888888777666  477788888888888877665555555555556777776665 


Q ss_pred             ccCCCCc--ccEEECCCCccccc-cccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc------cccccC
Q 020161          201 NLCGLKC--IKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV------DDIQNL  271 (330)
Q Consensus       201 ~~~~~~~--L~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~------~~~~~~  271 (330)
                      ++.....  |+.+.+.++.+... ..+..+..+..+++..+.+..+..+.....+..+....+.+...      ......
T Consensus       225 ~l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (414)
T KOG0531|consen  225 GLNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLEGLERLPKLSELWLNDNKLALSEAISQEYITSAA  304 (414)
T ss_pred             CcccchhHHHHHHhcccCccccccccccccccccccchhhccccccccccccchHHHhccCcchhcchhhhhcccccccc
Confidence            4444443  78888888887777 66777888888888888888877777777777777777776533      224556


Q ss_pred             CCCCeEeCCCCCCCc
Q 020161          272 SRLEDLWLNDNQIES  286 (330)
Q Consensus       272 ~~L~~L~l~~n~l~~  286 (330)
                      +.+..+.+..|++..
T Consensus       305 ~~~~~~~~~~~~~~~  319 (414)
T KOG0531|consen  305 PTLVTLTLELNPIRK  319 (414)
T ss_pred             ccccccccccCcccc
Confidence            677777777777664

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.17  E-value=6.2e-11  Score=106.38  Aligned_cols=188  Identities=27%  Similarity=0.397  Sum_probs=116.4

Q ss_pred             EEEccCCcC-cCCCCCCCCCcccEEEccCCCCcCccccccccC-CCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccc
Q 020161          100 ELILRDNKL-MKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD-TLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLR  176 (330)
Q Consensus       100 ~L~l~~~~l-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~  176 (330)
                      .+.+..+.+ .....+...+.++.+++.++.+..+++...... +|+.|+++.|.+..+ ..+..+++|+.|+++.|.+.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            355555544 223333444556666666666666655555553 666666666666654 35666677777777777765


Q ss_pred             cccccc-CCCCCcEEECcCCCcccccc--CCCCcccEEECCCCc-cccccccccccccceEEccCCCCCC-CcCCCCCCC
Q 020161          177 VMENLQ-NLTNLQELWLGRNRIKVVNL--CGLKCIKKISLQSNR-LTSMKGFEECIALEELYLSHNGISK-MEGLSTLVN  251 (330)
Q Consensus       177 ~~~~l~-~~~~L~~L~l~~~~i~~~~~--~~~~~L~~L~l~~~~-l~~~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~  251 (330)
                      ...... ..+.|+.|++++|.+...+.  .....|+++.+++|. +.....+.....+..+.+..|.+.. ...+..+++
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~  256 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN  256 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccc
Confidence            444333 56667777777777766633  244557777777773 3333455666666666677776666 345566666


Q ss_pred             CCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCch
Q 020161          252 LHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL  287 (330)
Q Consensus       252 L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~  287 (330)
                      ++.|++++|.++.++.+....+++.|++++|.+..+
T Consensus       257 l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         257 LETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cceeccccccccccccccccCccCEEeccCcccccc
Confidence            777777777777776577777777777777766643

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=1.1e-11  Score=105.98  Aligned_cols=198  Identities=22%  Similarity=0.273  Sum_probs=96.8

Q ss_pred             cccCCCcEEEccCCcCcCCC---CCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEE
Q 020161           93 DALAGLEELILRDNKLMKIP---DVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILE  169 (330)
Q Consensus        93 ~~~~~L~~L~l~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  169 (330)
                      .++.+|+.+.+.++.+...+   ....+++++.|++++|-+....+....                   ...+++|+.|+
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i-------------------~eqLp~Le~LN  178 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKI-------------------AEQLPSLENLN  178 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHH-------------------HHhcccchhcc
Confidence            34667777777777666444   145567777777777655544433222                   23344444444


Q ss_pred             cCCcccccc---ccccCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCc-cccc-cccccccccceEEccCCCC
Q 020161          170 FGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNR-LTSM-KGFEECIALEELYLSHNGI  240 (330)
Q Consensus       170 l~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~-l~~~-~~~~~~~~L~~l~l~~~~~  240 (330)
                      ++.|++..+   ..-...++++.|.++.|+++-.    ....+|+++.|.+..|. +... ....-++.|++|+|++|++
T Consensus       179 ls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~l  258 (505)
T KOG3207|consen  179 LSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNL  258 (505)
T ss_pred             cccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcc
Confidence            444444221   0012344555555555555432    23445555555555552 1111 1123345555566655555


Q ss_pred             CCCc---CCCCCCCCCEEEcCCCCCCCcc---c-----cccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161          241 SKME---GLSTLVNLHVLDVSSNKLTLVD---D-----IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN  309 (330)
Q Consensus       241 ~~~~---~~~~~~~L~~L~l~~n~~~~~~---~-----~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n  309 (330)
                      -+.+   ....+++|+.|+++.+.++++.   .     ....++|++|++..|+|.++... .+ +...++|+.+.+..|
T Consensus       259 i~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl-~~-l~~l~nlk~l~~~~n  336 (505)
T KOG3207|consen  259 IDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSL-NH-LRTLENLKHLRITLN  336 (505)
T ss_pred             cccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCcccccccc-ch-hhccchhhhhhcccc
Confidence            4432   3445555555555555555441   1     23345566666666665544221 11 233355555555555


Q ss_pred             Cc
Q 020161          310 PC  311 (330)
Q Consensus       310 ~~  311 (330)
                      ++
T Consensus       337 ~l  338 (505)
T KOG3207|consen  337 YL  338 (505)
T ss_pred             cc
Confidence            54

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.14  E-value=5.1e-12  Score=108.07  Aligned_cols=198  Identities=24%  Similarity=0.283  Sum_probs=108.7

Q ss_pred             hcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC----CCCCCcccEEEccCCCCcCcccc--ccc
Q 020161           66 SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD----VSIFKKLSVFDVSFNEITSSHGL--SNV  139 (330)
Q Consensus        66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~~~~~~~~--~~~  139 (330)
                      .++.+|+.+.+.++.+.....+  .....|+.++.|+++.|-+..+..    ...+|+|+.|+++.|++.....-  ...
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~--~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~  195 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIE--EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL  195 (505)
T ss_pred             hhHHhhhheeecCccccccchh--hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence            3456666666666655553221  234556666666666665554322    34566666666666665433221  112


Q ss_pred             cCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc----ccCCCCcccE
Q 020161          140 TDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKK  210 (330)
Q Consensus       140 ~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~  210 (330)
                      .++++.|.++.|.+.+-   .....+++++.|.+.+|.....  ....-...|++|++++|.+-+.    ....++.|..
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~  275 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQ  275 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhh
Confidence            45566666666666551   2234556666666666531111  1122234566666666654443    3445566666


Q ss_pred             EECCCCccccc--cc------cccccccceEEccCCCCCCCcCC---CCCCCCCEEEcCCCCCCCc
Q 020161          211 ISLQSNRLTSM--KG------FEECIALEELYLSHNGISKMEGL---STLVNLHVLDVSSNKLTLV  265 (330)
Q Consensus       211 L~l~~~~l~~~--~~------~~~~~~L~~l~l~~~~~~~~~~~---~~~~~L~~L~l~~n~~~~~  265 (330)
                      |+++.+.+..+  +.      ....+.|+.|++..|++.+.+++   ..+++|+.|.+..|+++..
T Consensus       276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            66666655544  11      24567777777777777665443   3456677777777776543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.09  E-value=2e-10  Score=103.11  Aligned_cols=190  Identities=31%  Similarity=0.429  Sum_probs=113.6

Q ss_pred             EEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccC-CCcEEEccCCcCcCCC-CCCCCCcccEEEccC
Q 020161           50 ELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA-GLEELILRDNKLMKIP-DVSIFKKLSVFDVSF  127 (330)
Q Consensus        50 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~  127 (330)
                      .+....+.+..-...+..++.++.+++.++.++...+.    ....+ +|+.|+++.+.+..++ ++..+++|+.|+++.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~----~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPL----IGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccc----cccchhhcccccccccchhhhhhhhhccccccccccCC
Confidence            45555555533333344556666666666666654221    12232 5666666666666664 356666666666666


Q ss_pred             CCCcCccccccccCCCcEEEccCCCCCCcccc-cCCCCccEEEcCCcc-ccccccccCCCCCcEEECcCCCccc--cccC
Q 020161          128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEI-EHFHDLQILEFGSNR-LRVMENLQNLTNLQELWLGRNRIKV--VNLC  203 (330)
Q Consensus       128 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~l~~~~~L~~L~l~~~~i~~--~~~~  203 (330)
                      |++..++......+.++.|++++|.+..++.. .....|+++.+++|. +..+..+.....+..+.+..+.+..  ....
T Consensus       173 N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  252 (394)
T COG4886         173 NDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIG  252 (394)
T ss_pred             chhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhc
Confidence            66666665544556666666666666665443 344446667777663 3455555666666666666666655  3556


Q ss_pred             CCCcccEEECCCCccccccccccccccceEEccCCCCCCC
Q 020161          204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM  243 (330)
Q Consensus       204 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~  243 (330)
                      .+++++.|++++|.++..+.+.....++.++++++.+...
T Consensus       253 ~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~  292 (394)
T COG4886         253 NLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA  292 (394)
T ss_pred             cccccceeccccccccccccccccCccCEEeccCcccccc
Confidence            6666777777777777666566667777777777666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.96  E-value=2.9e-11  Score=106.75  Aligned_cols=200  Identities=27%  Similarity=0.294  Sum_probs=150.6

Q ss_pred             CcccccccCCCcEEeccCcccccCCCCCC---CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhh
Q 020161           16 PDQAVEIDLSNTVLDLTSFQLHDLDSVEF---PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRW   92 (330)
Q Consensus        16 ~~~~~~~~~~l~~l~l~~~~l~~~~~~~~---~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~   92 (330)
                      ++.+.+..-.--+|.+++.++..+|....   .......+++.|++..+|..+..|..|..+.+..|.+-.+    ...+
T Consensus        42 l~r~leeA~~sg~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~i----p~~i  117 (722)
T KOG0532|consen   42 LERALEEAEYSGRLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTI----PEAI  117 (722)
T ss_pred             hhHHHHHHhhhcccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceec----chhh
Confidence            33333333444567788888888876444   3556778899999999998888888899988888877664    2345


Q ss_pred             cccCCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEc
Q 020161           93 DALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEF  170 (330)
Q Consensus        93 ~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l  170 (330)
                      .++..|++++++.|.++.+|. +..+ -|+.|-+++|+++.++.......+|..|+.+.|.+..+ ..+.++.+|+.+.+
T Consensus       118 ~~L~~lt~l~ls~NqlS~lp~~lC~l-pLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~v  196 (722)
T KOG0532|consen  118 CNLEALTFLDLSSNQLSHLPDGLCDL-PLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNV  196 (722)
T ss_pred             hhhhHHHHhhhccchhhcCChhhhcC-cceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHH
Confidence            668888999999999998886 4444 48889999999998887666778888899999888774 45777788888888


Q ss_pred             CCcccc-ccccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCccccc
Q 020161          171 GSNRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSM  221 (330)
Q Consensus       171 ~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~  221 (330)
                      ..|++. .+..+..+ .|..||+++|.+...  .|..+..|++|-+.+|.++.-
T Consensus       197 rRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSP  249 (722)
T KOG0532|consen  197 RRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSP  249 (722)
T ss_pred             hhhhhhhCCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCC
Confidence            887764 55556644 478888888888776  677888888888888877654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.89  E-value=3.5e-11  Score=109.19  Aligned_cols=186  Identities=24%  Similarity=0.341  Sum_probs=121.2

Q ss_pred             CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECc
Q 020161          114 VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLG  193 (330)
Q Consensus       114 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~  193 (330)
                      +..+.+|++|.+.++.+.....+...-.+|++|.+.+. +..         |+++ +..|.-. +..-...-.|...+++
T Consensus       105 ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~S-l~A---------l~~v-~ascggd-~~ns~~Wn~L~~a~fs  172 (1096)
T KOG1859|consen  105 IFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNS-LDA---------LRHV-FASCGGD-ISNSPVWNKLATASFS  172 (1096)
T ss_pred             eccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhcc-HHH---------HHHH-HHHhccc-cccchhhhhHhhhhcc
Confidence            55677888888888887765554444455665544332 111         0100 0000000 0000112345556666


Q ss_pred             CCCcccc--ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCC-CCCCEEEcCCCCCCCcccccc
Q 020161          194 RNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTL-VNLHVLDVSSNKLTLVDDIQN  270 (330)
Q Consensus       194 ~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~  270 (330)
                      +|.+...  .+.-++.++.|++++|+++....++.|+.|++|||++|.+..++.+..- ..|..|.+++|.++.+..+.+
T Consensus       173 yN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~  252 (1096)
T KOG1859|consen  173 YNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIEN  252 (1096)
T ss_pred             hhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHh
Confidence            6665444  5666677888888888888888888888899999999888887755422 248999999999998877888


Q ss_pred             CCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161          271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       271 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      +++|+.||+++|-|.+-...  ..+..+..|+.|+|.|||+-+
T Consensus       253 LksL~~LDlsyNll~~hseL--~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSEL--EPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             hhhhhccchhHhhhhcchhh--hHHHHHHHHHHHhhcCCcccc
Confidence            88999999999987754322  234556778999999999643

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.88  E-value=2.9e-11  Score=106.78  Aligned_cols=207  Identities=20%  Similarity=0.309  Sum_probs=123.0

Q ss_pred             EEEccCCcCcCCCC---CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCccc
Q 020161          100 ELILRDNKLMKIPD---VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRL  175 (330)
Q Consensus       100 ~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~  175 (330)
                      .|.|++-.+..+|.   -..+.--...+++.|++..++.....+..|+.+.+..|.+..+ ..+..+..|+.++++.|.+
T Consensus        54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql  133 (722)
T KOG0532|consen   54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL  133 (722)
T ss_pred             ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh
Confidence            44555555555542   1223344566777787777776555566677777776666553 4566666777777777776


Q ss_pred             c-ccccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCccccc-cccccccccceEEccCCCCCCCc-CCCCCC
Q 020161          176 R-VMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKME-GLSTLV  250 (330)
Q Consensus       176 ~-~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~  250 (330)
                      + .+..+..++ |+.|-+++|.+...  +++....|..++.+.|.+... +.+.....|+.+.+..|.+..++ .+. .-
T Consensus       134 S~lp~~lC~lp-Lkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~L  211 (722)
T KOG0532|consen  134 SHLPDGLCDLP-LKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SL  211 (722)
T ss_pred             hcCChhhhcCc-ceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CC
Confidence            5 334555555 66666666666554  445556666666666666655 34555666666666666666553 233 23


Q ss_pred             CCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161          251 NLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN  309 (330)
Q Consensus       251 ~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n  309 (330)
                      .|..||+|+|+++.+ ..+..++.|++|.|.+|+++.-+..+ -+.+..+=-+.|+..-|
T Consensus       212 pLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqI-C~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  212 PLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQI-CEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHH-Hhccceeeeeeecchhc
Confidence            366777777777666 45666777777777777776544332 22344444455544444

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.76  E-value=4e-09  Score=101.95  Aligned_cols=126  Identities=21%  Similarity=0.214  Sum_probs=82.8

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCC--CCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANR--LTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~--i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      ...+.+.+.++.+..++.-..++.|++|-+.++.  +..++.. |..++.|++|++++|.-....|   ..++.+-+|++
T Consensus       523 ~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP---~~I~~Li~Lry  599 (889)
T KOG4658|consen  523 NSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLP---SSIGELVHLRY  599 (889)
T ss_pred             hheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCC---hHHhhhhhhhc
Confidence            3446666666666666554555678888888875  5555554 6678888888888765444433   34455777788


Q ss_pred             EEccCCcCcCCCC-CCCCCcccEEEccCCCCcCcc-ccccccCCCcEEEccCCC
Q 020161          101 LILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNE  152 (330)
Q Consensus       101 L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~  152 (330)
                      |+++++.+..+|. ++++..|.+|++..+...... .....+++|+.|.+....
T Consensus       600 L~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  600 LDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             ccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            8888888887776 777778888888777543333 333336777777766544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.74  E-value=6.9e-09  Score=66.43  Aligned_cols=60  Identities=37%  Similarity=0.542  Sum_probs=38.6

Q ss_pred             CCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcC
Q 020161           46 TNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKL  108 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l  108 (330)
                      ++|++|++++|++..++. .|.++++|++|++++|.+...   ....|..+++|++|++++|.+
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i---~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSI---PPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEE---ETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCcc---CHHHHcCCCCCCEEeCcCCcC
Confidence            456677777777776665 366677777777777766655   233455666677777666653

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.69  E-value=1.2e-08  Score=98.71  Aligned_cols=214  Identities=21%  Similarity=0.202  Sum_probs=119.6

Q ss_pred             CCcEEeccCcc--cccCCC--CCCCCCcCEEecCCC-CCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161           25 SNTVLDLTSFQ--LHDLDS--VEFPTNLTELDLTAN-RLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (330)
Q Consensus        25 ~l~~l~l~~~~--l~~~~~--~~~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~   99 (330)
                      .++.|=+.++.  +..++.  ...++.|+.|++++| .+..+|..++.+-+||+|+++++.+..    .+..+.++..|.
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~----LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH----LPSGLGNLKKLI  621 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc----cchHHHHHHhhh
Confidence            46666666654  444444  344688999999977 566889889999999999999988775    445677788899


Q ss_pred             EEEccCCc-CcCCCCC-CCCCcccEEEccCCCCcCccccccc---cCCCcEEEccCCCCCCcccccCCCCcc----EEEc
Q 020161          100 ELILRDNK-LMKIPDV-SIFKKLSVFDVSFNEITSSHGLSNV---TDTLKELYVSKNEVPKMEEIEHFHDLQ----ILEF  170 (330)
Q Consensus       100 ~L~l~~~~-l~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~L~----~L~l  170 (330)
                      +|++..+. +..++.+ ..+++|++|.+..............   +..|+.+............+..+..|.    .+.+
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~  701 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSI  701 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhh
Confidence            99988764 3445554 4488999998887752221111111   233333333222220012222222222    2222


Q ss_pred             CCccc-cccccccCCCCCcEEECcCCCccccccCCCC---------cccEEECCCCccccc-cccccccccceEEccCCC
Q 020161          171 GSNRL-RVMENLQNLTNLQELWLGRNRIKVVNLCGLK---------CIKKISLQSNRLTSM-KGFEECIALEELYLSHNG  239 (330)
Q Consensus       171 ~~~~~-~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~---------~L~~L~l~~~~l~~~-~~~~~~~~L~~l~l~~~~  239 (330)
                      .++.. +....+..+.+|+.|.+.++.+.+..+....         ++..+...++..-.. ......++|+.+.+.++.
T Consensus       702 ~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~  781 (889)
T KOG4658|consen  702 EGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCR  781 (889)
T ss_pred             cccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEeccc
Confidence            22222 2334566677778888777776544222211         222222222211111 223456788888887776


Q ss_pred             CCC
Q 020161          240 ISK  242 (330)
Q Consensus       240 ~~~  242 (330)
                      ..+
T Consensus       782 ~~e  784 (889)
T KOG4658|consen  782 LLE  784 (889)
T ss_pred             ccc
Confidence            443

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.68  E-value=7.6e-10  Score=94.51  Aligned_cols=277  Identities=18%  Similarity=0.111  Sum_probs=146.5

Q ss_pred             CCcEEeccCcccccCCC----CCCCCCcCEEecCCCC-CCC-hhhhh-hcCCCCCEEeCCCC-cCCccccccchhhcccC
Q 020161           25 SNTVLDLTSFQLHDLDS----VEFPTNLTELDLTANR-LTS-LDSRI-SHLSNLKKLSLRQN-LIDDAAIEPISRWDALA   96 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~----~~~~~~L~~L~l~~~~-i~~-l~~~~-~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~   96 (330)
                      .++.|.+.++.--+..+    ...++++++|++.+|. ++. .-.++ ..|++|+++++..| .+++...+.+  ...++
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l--a~gC~  216 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL--AEGCR  216 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHH--HHhhh
Confidence            35666666654333222    2336778888888774 331 11122 35778888888774 3444422211  24578


Q ss_pred             CCcEEEccCC-cCcC--CCC-CCCCCcccEEEccCCCCcCcccc---ccccCCCcEEEccCCCC-CCc---ccccCCCCc
Q 020161           97 GLEELILRDN-KLMK--IPD-VSIFKKLSVFDVSFNEITSSHGL---SNVTDTLKELYVSKNEV-PKM---EEIEHFHDL  165 (330)
Q Consensus        97 ~L~~L~l~~~-~l~~--~~~-~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~L~~L~l~~~~~-~~~---~~~~~~~~L  165 (330)
                      +|.+|+++|| .+++  +.. ...+..+..+...+|.=..+..+   ...+..+..+++..|.. ++.   ..-..+..|
T Consensus       217 kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~l  296 (483)
T KOG4341|consen  217 KLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHAL  296 (483)
T ss_pred             hHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHh
Confidence            8888888887 3443  322 33444455555554432222111   12244455555545532 221   123456677


Q ss_pred             cEEEcCCccc-c--cc-ccccCCCCCcEEECcCCC-cccccc----CCCCcccEEECCCCcccccc----ccccccccce
Q 020161          166 QILEFGSNRL-R--VM-ENLQNLTNLQELWLGRNR-IKVVNL----CGLKCIKKISLQSNRLTSMK----GFEECIALEE  232 (330)
Q Consensus       166 ~~L~l~~~~~-~--~~-~~l~~~~~L~~L~l~~~~-i~~~~~----~~~~~L~~L~l~~~~l~~~~----~~~~~~~L~~  232 (330)
                      +.++.+++.- +  .+ .-.+++.+|+.+.++.++ +++.+|    ..++.|+.+++..+......    --.+|+.|+.
T Consensus       297 q~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~  376 (483)
T KOG4341|consen  297 QVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRV  376 (483)
T ss_pred             hhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhcc
Confidence            7777776543 2  11 223466777777777764 344322    34466777777666443331    2346677777


Q ss_pred             EEccCCCCCCC-------cCCCCCCCCCEEEcCCCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccc
Q 020161          233 LYLSHNGISKM-------EGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLT  302 (330)
Q Consensus       233 l~l~~~~~~~~-------~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~  302 (330)
                      +.+++|....-       ....+...++.+.+++++.+..   ..+..++.|+.+++-+++-..- +.+..+..++|+++
T Consensus       377 lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk-~~i~~~~~~lp~i~  455 (483)
T KOG4341|consen  377 LSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK-EAISRFATHLPNIK  455 (483)
T ss_pred             CChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh-hhhHHHHhhCccce
Confidence            77776643221       1234455677777777765433   4556666777777777663322 23345566666666


Q ss_pred             hh
Q 020161          303 TI  304 (330)
Q Consensus       303 ~l  304 (330)
                      +.
T Consensus       456 v~  457 (483)
T KOG4341|consen  456 VH  457 (483)
T ss_pred             eh
Confidence            53

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.57  E-value=5.7e-08  Score=62.15  Aligned_cols=59  Identities=34%  Similarity=0.514  Sum_probs=43.2

Q ss_pred             CCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCC
Q 020161           69 SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEI  130 (330)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~  130 (330)
                      |+|++|++++|.+...   +...|..+++|++|++++|.++.+++  +..+++|+++++++|++
T Consensus         1 p~L~~L~l~~n~l~~i---~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEI---PPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEE---CTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCcc---CHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            5678888888877765   33456677888888888888877664  67778888888877753

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.55  E-value=1.4e-08  Score=82.38  Aligned_cols=187  Identities=22%  Similarity=0.245  Sum_probs=83.1

Q ss_pred             CCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCcCCc---ccc----ccchhhcccCCCcEEEccCCcCcC-CC
Q 020161           46 TNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDD---AAI----EPISRWDALAGLEELILRDNKLMK-IP  112 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~---~~~----~~~~~~~~~~~L~~L~l~~~~l~~-~~  112 (330)
                      ..++++++|||.|..     +...+..-.+|+..+++.-....   ..+    ....++..||+|+.+++|.|.+.. .|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            455666666665552     22234455566666655421111   100    012234556666666666666552 22


Q ss_pred             C-----CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc------ccc
Q 020161          113 D-----VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM------ENL  181 (330)
Q Consensus       113 ~-----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~------~~l  181 (330)
                      +     ++..+.|.+|.+.+|.+..+...... ..|.+|  ..     ......-+.|+.+....|++..-      ..+
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rig-kal~~l--a~-----nKKaa~kp~Le~vicgrNRlengs~~~~a~~l  181 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIG-KALFHL--AY-----NKKAADKPKLEVVICGRNRLENGSKELSAALL  181 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHH-HHHHHH--HH-----HhhhccCCCceEEEeccchhccCcHHHHHHHH
Confidence            1     44455566666666655443221100 000000  00     01223345556666665555311      112


Q ss_pred             cCCCCCcEEECcCCCcccc--------ccCCCCcccEEECCCCcccccc------ccccccccceEEccCCCC
Q 020161          182 QNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSMK------GFEECIALEELYLSHNGI  240 (330)
Q Consensus       182 ~~~~~L~~L~l~~~~i~~~--------~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~L~~l~l~~~~~  240 (330)
                      ..-..|+++.+.+|+|...        ++..+.+|+.|+++.|.++...      .+..++.|+.|.+.+|-+
T Consensus       182 ~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDCll  254 (388)
T COG5238         182 ESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLL  254 (388)
T ss_pred             HhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhh
Confidence            2223556666666655433        3344455555555555444331      122334455555555444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.51  E-value=5.6e-10  Score=101.57  Aligned_cols=205  Identities=26%  Similarity=0.314  Sum_probs=132.2

Q ss_pred             hcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCC-CcccEEEccCCCCcCccccccccCCCc
Q 020161           66 SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF-KKLSVFDVSFNEITSSHGLSNVTDTLK  144 (330)
Q Consensus        66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~L~  144 (330)
                      .-+++++.+.+-...-.+  |..+-.+..+.+|+.|-+.+|.+..+-++..+ .+|++|.+ .+....+..+...+    
T Consensus        81 d~lqkt~~lkl~~~pa~~--pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC-~~Sl~Al~~v~asc----  153 (1096)
T KOG1859|consen   81 DFLQKTKVLKLLPSPARD--PTEPISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLIC-HNSLDALRHVFASC----  153 (1096)
T ss_pred             HHHhhheeeeecccCCCC--CCCCceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhh-hccHHHHHHHHHHh----
Confidence            345556666554432222  22222345578899999999988764332222 23444433 22333322221111    


Q ss_pred             EEEccCCCCCCcccccCCCCccEEEcCCcccccc-ccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCcccccc
Q 020161          145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK  222 (330)
Q Consensus       145 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~  222 (330)
                              ..++..-..-.+|...++++|.+..+ .+++-+++++.|+++.|.+.++ .+.+++.|++|+++.|.++..+
T Consensus       154 --------ggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp  225 (1096)
T KOG1859|consen  154 --------GGDISNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVP  225 (1096)
T ss_pred             --------ccccccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhcccc
Confidence                    00000000112355667777777655 4466778888888888888887 6778888888999888888886


Q ss_pred             ccc--cccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc---cccccCCCCCeEeCCCCCCCc
Q 020161          223 GFE--ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       223 ~~~--~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      .+.  .|. |+.|.+++|.++.+-++.++.+|..|+++.|-+.+.   ..++.+..|..|+|.+|++--
T Consensus       226 ~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c  293 (1096)
T KOG1859|consen  226 QLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC  293 (1096)
T ss_pred             ccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence            543  344 888999999888888888888999999999877655   667888888999999998763

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=6.5e-09  Score=85.28  Aligned_cols=168  Identities=20%  Similarity=0.259  Sum_probs=108.6

Q ss_pred             CCcCEEecCCCCCC--ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCC-cCcCCC--C-CCCCCc
Q 020161           46 TNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN-KLMKIP--D-VSIFKK  119 (330)
Q Consensus        46 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~--~-~~~~~~  119 (330)
                      +++++|++++..|+  .+..-+.+|.+|+.|.+.++.+.+...   ..+.....|+.++++.| .++...  . +..+..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~---~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIV---NTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHH---HHHhccccceeeccccccccchhHHHHHHHhhhh
Confidence            56999999998888  466668889999999999988877422   23556788899998876 555422  1 567788


Q ss_pred             ccEEEccCCCCcCcc---ccccccCCCcEEEccCCCCCC----cc-cccCCCCccEEEcCCccc-c--ccccccCCCCCc
Q 020161          120 LSVFDVSFNEITSSH---GLSNVTDTLKELYVSKNEVPK----ME-EIEHFHDLQILEFGSNRL-R--VMENLQNLTNLQ  188 (330)
Q Consensus       120 L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~----~~-~~~~~~~L~~L~l~~~~~-~--~~~~l~~~~~L~  188 (330)
                      |..|+++.|.+....   ...+..++|..|+++++.-.-    +. -...+++|.+||++.+.. +  ....+..++.|+
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            888888888665322   122336777888887763211    11 235667777777776543 1  223445566677


Q ss_pred             EEECcCCC-cccc---ccCCCCcccEEECCCC
Q 020161          189 ELWLGRNR-IKVV---NLCGLKCIKKISLQSN  216 (330)
Q Consensus       189 ~L~l~~~~-i~~~---~~~~~~~L~~L~l~~~  216 (330)
                      +|.++.|. +...   .+...+++.+|++.++
T Consensus       342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence            77776653 2221   5666667777776655

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.44  E-value=4.9e-07  Score=70.31  Aligned_cols=123  Identities=24%  Similarity=0.320  Sum_probs=77.3

Q ss_pred             CcEEeccCcccccCCCCCC-CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161           26 NTVLDLTSFQLHDLDSVEF-PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (330)
Q Consensus        26 l~~l~l~~~~l~~~~~~~~-~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  104 (330)
                      -+++++.+.++..++.++. ......+++++|.+..++. |.++++|+.|.+++|.|+.+.+...   ..++.|..|.+.
T Consensus        21 e~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~---~~~p~l~~L~Lt   96 (233)
T KOG1644|consen   21 ERELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLD---TFLPNLKTLILT   96 (233)
T ss_pred             ccccccccccccchhhccccccccceecccccchhhccc-CCCccccceEEecCCcceeeccchh---hhccccceEEec
Confidence            4556666666666554333 3566777777777666543 6677777777777777777654321   235667777777


Q ss_pred             CCcCcCCC---CCCCCCcccEEEccCCCCcCccc----cccccCCCcEEEccCCC
Q 020161          105 DNKLMKIP---DVSIFKKLSVFDVSFNEITSSHG----LSNVTDTLKELYVSKNE  152 (330)
Q Consensus       105 ~~~l~~~~---~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~L~~L~l~~~~  152 (330)
                      +|.+..+.   ++..+|.|++|.+-+|.......    .....++|+.|++.+-.
T Consensus        97 nNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen   97 NNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             CcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            77666433   35667777777777776654332    23336777777776643

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.41  E-value=9.2e-08  Score=78.64  Aligned_cols=80  Identities=25%  Similarity=0.248  Sum_probs=46.2

Q ss_pred             CCCcccEEECCCCccccc---cccccccccceEEccCCCCCC---CcCCCCCCCCCEEEcCCCCCCCc--------cccc
Q 020161          204 GLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISK---MEGLSTLVNLHVLDVSSNKLTLV--------DDIQ  269 (330)
Q Consensus       204 ~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~l~l~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~--------~~~~  269 (330)
                      .++++..+-+..|.+...   ......+.+-.|+++.+++.+   ++.+.+++.|..|.++++++.+.        -.++
T Consensus       197 ~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIa  276 (418)
T KOG2982|consen  197 IFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIA  276 (418)
T ss_pred             hcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEe
Confidence            345566666666644433   344455566666677666655   34566667777777777776544        1245


Q ss_pred             cCCCCCeEeCCCCCCC
Q 020161          270 NLSRLEDLWLNDNQIE  285 (330)
Q Consensus       270 ~~~~L~~L~l~~n~l~  285 (330)
                      .+++++.|+  +.+|+
T Consensus       277 RL~~v~vLN--GskIs  290 (418)
T KOG2982|consen  277 RLTKVQVLN--GSKIS  290 (418)
T ss_pred             eccceEEec--Ccccc
Confidence            566666655  33554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=8.8e-09  Score=84.53  Aligned_cols=171  Identities=21%  Similarity=0.139  Sum_probs=125.6

Q ss_pred             CCcEEeccCcccccC---CCCCCCCCcCEEecCCCCCC-ChhhhhhcCCCCCEEeCCCCc-CCccccccchhhcccCCCc
Q 020161           25 SNTVLDLTSFQLHDL---DSVEFPTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNL-IDDAAIEPISRWDALAGLE   99 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~---~~~~~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~   99 (330)
                      .++.+|+++..++--   ..+..|..|+.|++.|+.+. .+...+....+|+.++++++. ++..+..  --+.+|+.|+
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~--ll~~scs~L~  263 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQ--LLLSSCSRLD  263 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHH--HHHHhhhhHh
Confidence            467888877665432   12345789999999999998 566678899999999999974 4443221  1257899999


Q ss_pred             EEEccCCcCcC-C-CC--CCCCCcccEEEccCCCCc----CccccccccCCCcEEEccCCCCCC---cccccCCCCccEE
Q 020161          100 ELILRDNKLMK-I-PD--VSIFKKLSVFDVSFNEIT----SSHGLSNVTDTLKELYVSKNEVPK---MEEIEHFHDLQIL  168 (330)
Q Consensus       100 ~L~l~~~~l~~-~-~~--~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L  168 (330)
                      .|+++||.+.. . ..  .+--+.|+.|+++++...    .+.-+...++++.+|+++.|....   +..+..++.|+++
T Consensus       264 ~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l  343 (419)
T KOG2120|consen  264 ELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL  343 (419)
T ss_pred             hcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence            99999997663 2 11  233468899999988533    333445669999999999986555   3568899999999


Q ss_pred             EcCCccc---cccccccCCCCCcEEECcCCCc
Q 020161          169 EFGSNRL---RVMENLQNLTNLQELWLGRNRI  197 (330)
Q Consensus       169 ~l~~~~~---~~~~~l~~~~~L~~L~l~~~~i  197 (330)
                      .++.|-.   +..-.+...|.|.+|+..++--
T Consensus       344 SlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  344 SLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             ehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            9998853   2345577889999999887643

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=3.3e-08  Score=80.43  Aligned_cols=87  Identities=28%  Similarity=0.406  Sum_probs=74.1

Q ss_pred             ccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhc
Q 020161          227 CIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL  306 (330)
Q Consensus       227 ~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l  306 (330)
                      +.+++.|+..+|++.++.....++.|++|.||-|+|+.+..+..|++|++|+|+.|.|.+++++  ..+++.|+|+.|+|
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL--~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDEL--EYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHH--HHHhcCchhhhHhh
Confidence            4567788888888888877788889999999999999998899999999999999999988643  45788999999999


Q ss_pred             cCCCccccc
Q 020161          307 ENNPCKIFK  315 (330)
Q Consensus       307 ~~n~~~~~~  315 (330)
                      ..|||....
T Consensus        96 ~ENPCc~~a  104 (388)
T KOG2123|consen   96 DENPCCGEA  104 (388)
T ss_pred             ccCCccccc
Confidence            999986543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=2.5e-07  Score=76.13  Aligned_cols=171  Identities=20%  Similarity=0.236  Sum_probs=94.5

Q ss_pred             CCCcCEEecCCCCCCChh---hhhhcCCCCCEEeCCCCcCCccccccchhh-cccCCCcEEEccCCcCc--CCCC-CCCC
Q 020161           45 PTNLTELDLTANRLTSLD---SRISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLEELILRDNKLM--KIPD-VSIF  117 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~l~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~--~~~~-~~~~  117 (330)
                      +.+++++++.+|.|+...   +-+.++|.|+.|+++.|.+..    .+... ....+|+.|.+.++.+.  .... +..+
T Consensus        70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s----~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS----DIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC----ccccCcccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            577888888888888543   336788888888888887766    33333 23567778887776654  2222 5567


Q ss_pred             CcccEEEccCCCCcCcc----ccccccCCCcEEEccCCCCCCc----ccccCCCCccEEEcCCccccc---cccccCCCC
Q 020161          118 KKLSVFDVSFNEITSSH----GLSNVTDTLKELYVSKNEVPKM----EEIEHFHDLQILEFGSNRLRV---MENLQNLTN  186 (330)
Q Consensus       118 ~~L~~L~l~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~---~~~l~~~~~  186 (330)
                      |.++.|+++.|.+..+-    ...-..+.+..+...+|.....    .-..-++++..+.+..+++..   -.+....+.
T Consensus       146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~  225 (418)
T KOG2982|consen  146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS  225 (418)
T ss_pred             hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence            77777777777443211    0011123344444444433221    112334555555555554421   122333444


Q ss_pred             CcEEECcCCCcccc----ccCCCCcccEEECCCCccc
Q 020161          187 LQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLT  219 (330)
Q Consensus       187 L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~  219 (330)
                      +-.|+++.+.+++.    .+.+++.+..|.+.++.+.
T Consensus       226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             chhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            44556666655544    4556666666666666543

>PLN03150 hypothetical protein; Provisional

Probab=98.31  E-value=2.2e-06  Score=81.15  Aligned_cols=102  Identities=20%  Similarity=0.239  Sum_probs=71.5

Q ss_pred             CcCEEecCCCCCC-ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcC-CCC-CCCCCcccEE
Q 020161           47 NLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD-VSIFKKLSVF  123 (330)
Q Consensus        47 ~L~~L~l~~~~i~-~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~-~~~~~~L~~L  123 (330)
                      .++.|++++|.+. .+|..+..+++|+.|++++|.+.+..+.   .+..+++|+.|++++|.+++ +|. +..+++|++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~---~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L  495 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP---SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRIL  495 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh---HHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence            3778888888887 5677788888888888888888775432   45668888888888888874 555 7778888888


Q ss_pred             EccCCCCcCcccccc--ccCCCcEEEccCC
Q 020161          124 DVSFNEITSSHGLSN--VTDTLKELYVSKN  151 (330)
Q Consensus       124 ~l~~~~~~~~~~~~~--~~~~L~~L~l~~~  151 (330)
                      ++++|.+.+..+...  ...++..+++.+|
T Consensus       496 ~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        496 NLNGNSLSGRVPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             ECcCCcccccCChHHhhccccCceEEecCC
Confidence            888888765433211  1233445555554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.26  E-value=1.7e-06  Score=50.87  Aligned_cols=39  Identities=46%  Similarity=0.680  Sum_probs=30.9

Q ss_pred             CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCcc
Q 020161           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDA   84 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~   84 (330)
                      ++|++|++++|+|+.+++.+.+|++|++|++++|.+++.
T Consensus         1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            468888888888888888888888888888888887763

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.26  E-value=1.2e-06  Score=51.44  Aligned_cols=37  Identities=41%  Similarity=0.583  Sum_probs=19.6

Q ss_pred             CCCEEEcCCCCCCCccc-cccCCCCCeEeCCCCCCCch
Q 020161          251 NLHVLDVSSNKLTLVDD-IQNLSRLEDLWLNDNQIESL  287 (330)
Q Consensus       251 ~L~~L~l~~n~~~~~~~-~~~~~~L~~L~l~~n~l~~~  287 (330)
                      +|++|++++|+++.++. +..+++|+.|++++|+++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i   39 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI   39 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence            45555555555555533 55555555555555555544

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.22  E-value=3e-06  Score=65.99  Aligned_cols=121  Identities=20%  Similarity=0.320  Sum_probs=70.0

Q ss_pred             CCcCEEecCCCCCCChhhhhh-cCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccE
Q 020161           46 TNLTELDLTANRLTSLDSRIS-HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSV  122 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~  122 (330)
                      .+=+++++++..+..+.. ++ ...+...+++++|.+..     ...|..++.|.+|.+.+|.|+.+.+  -..+++|+.
T Consensus        19 ~~e~e~~LR~lkip~ien-lg~~~d~~d~iDLtdNdl~~-----l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~   92 (233)
T KOG1644|consen   19 VRERELDLRGLKIPVIEN-LGATLDQFDAIDLTDNDLRK-----LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKT   92 (233)
T ss_pred             ccccccccccccccchhh-ccccccccceecccccchhh-----cccCCCccccceEEecCCcceeeccchhhhccccce
Confidence            345556666665554322 22 24456666777766554     2345556667777777777776654  234566777


Q ss_pred             EEccCCCCcCcccc--ccccCCCcEEEccCCCCCCcc-----cccCCCCccEEEcCC
Q 020161          123 FDVSFNEITSSHGL--SNVTDTLKELYVSKNEVPKME-----EIEHFHDLQILEFGS  172 (330)
Q Consensus       123 L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~L~~L~l~~  172 (330)
                      |.+.+|++..+..+  ...+++|++|.+-+|.++.-.     .+..+++|+.||+..
T Consensus        93 L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen   93 LILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             EEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhh
Confidence            77777766554332  233567777777776665521     245666777777655

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.15  E-value=4.8e-06  Score=67.91  Aligned_cols=198  Identities=21%  Similarity=0.238  Sum_probs=129.1

Q ss_pred             CCCCCcccEEEccCCCCcCcc-----ccccccCCCcEEEccCCCCCC------------cccccCCCCccEEEcCCcccc
Q 020161          114 VSIFKKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSKNEVPK------------MEEIEHFHDLQILEFGSNRLR  176 (330)
Q Consensus       114 ~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~------------~~~~~~~~~L~~L~l~~~~~~  176 (330)
                      +..+..++.+++++|.+..-.     .....-.+|+..+++.--...            .+.+..|++++.++++.|-+.
T Consensus        26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg  105 (388)
T COG5238          26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG  105 (388)
T ss_pred             HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence            345678889999999876421     111113456666655421111            134678889999999988763


Q ss_pred             --cc----ccccCCCCCcEEECcCCCcccc----------------ccCCCCcccEEECCCCcccccc------cccccc
Q 020161          177 --VM----ENLQNLTNLQELWLGRNRIKVV----------------NLCGLKCIKKISLQSNRLTSMK------GFEECI  228 (330)
Q Consensus       177 --~~----~~l~~~~~L~~L~l~~~~i~~~----------------~~~~~~~L~~L~l~~~~l~~~~------~~~~~~  228 (330)
                        .+    +.++..+.|++|.+++|++..+                ....-+.|+++....|.+..-+      .+..-.
T Consensus       106 ~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~  185 (388)
T COG5238         106 SEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHE  185 (388)
T ss_pred             cccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhc
Confidence              22    3356677888999988887655                1234477888888888765432      233336


Q ss_pred             ccceEEccCCCCCCC-------cCCCCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCchH--HHHHH
Q 020161          229 ALEELYLSHNGISKM-------EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLE--SIVEA  293 (330)
Q Consensus       229 ~L~~l~l~~~~~~~~-------~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~~--~~~~~  293 (330)
                      .|+++.+.+|.|..-       .++..+.+|+.|++..|-++..      ..+...+.|++|.+.+|-++.-+  .....
T Consensus       186 ~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~  265 (388)
T COG5238         186 NLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRR  265 (388)
T ss_pred             CceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHH
Confidence            788888888888652       3466778899999999888755      34566677889999998877531  12211


Q ss_pred             H-hccccccchhhccCCCc
Q 020161          294 V-AGSRETLTTIYLENNPC  311 (330)
Q Consensus       294 ~-~~~~~~L~~l~l~~n~~  311 (330)
                      + -...|+|+.|-..+|-.
T Consensus       266 f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         266 FNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             hhhhcCCCccccccchhhh
Confidence            1 12367888888888774

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.14  E-value=1.4e-06  Score=82.44  Aligned_cols=143  Identities=19%  Similarity=0.227  Sum_probs=97.7

Q ss_pred             CCccEEEcCCcccc---ccccc-cCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCccccccccccccccceEE
Q 020161          163 HDLQILEFGSNRLR---VMENL-QNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMKGFEECIALEELY  234 (330)
Q Consensus       163 ~~L~~L~l~~~~~~---~~~~l-~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~  234 (330)
                      .+|++|++++...-   .+..+ ..+|+|+.|.+.+-.+...    -+..+++|..||+++.+++...+++.+.+|+.|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            46788888775331   11222 3467888888888665444    4567788888888888888777777888888887


Q ss_pred             ccCCCCCC---CcCCCCCCCCCEEEcCCCCCCCc--------cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccch
Q 020161          235 LSHNGISK---MEGLSTLVNLHVLDVSSNKLTLV--------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT  303 (330)
Q Consensus       235 l~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~--------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~  303 (330)
                      +.+=.+..   +..+..+.+|+.||+|.......        +.-..+|.|+.||.+++.+..  ..+......-|+|+.
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~--~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE--EILEELLNSHPNLQQ  279 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH--HHHHHHHHhCccHhh
Confidence            77766654   34577788888888887654332        334557888888888777664  455666666777777


Q ss_pred             hhcc
Q 020161          304 IYLE  307 (330)
Q Consensus       304 l~l~  307 (330)
                      +-.-
T Consensus       280 i~~~  283 (699)
T KOG3665|consen  280 IAAL  283 (699)
T ss_pred             hhhh
Confidence            6543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.14  E-value=1.8e-07  Score=80.26  Aligned_cols=272  Identities=17%  Similarity=0.100  Sum_probs=173.0

Q ss_pred             CCCCCCCcccCCCcccccccCCCcEEeccCccc-ccC---CCCCCCCCcCEEecCCC-CCCC--hhhhhhcCCCCCEEeC
Q 020161            4 DGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQL-HDL---DSVEFPTNLTELDLTAN-RLTS--LDSRISHLSNLKKLSL   76 (330)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l-~~~---~~~~~~~~L~~L~l~~~-~i~~--l~~~~~~l~~L~~L~l   76 (330)
                      ++.+.-+..-..+.....+.+++++|++.++.. ++.   ....++++++++++.+| .++.  +..--.+|++|.+|++
T Consensus       144 SlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNl  223 (483)
T KOG4341|consen  144 SLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNL  223 (483)
T ss_pred             cccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhh
Confidence            344444555556777778899999999988762 221   12356899999999996 5552  3333568999999999


Q ss_pred             CCCc-CCccccccchhhcccCCCcEEEccCCcCcCCCC----CCCCCcccEEEccCCCCcCcc---ccccccCCCcEEEc
Q 020161           77 RQNL-IDDAAIEPISRWDALAGLEELILRDNKLMKIPD----VSIFKKLSVFDVSFNEITSSH---GLSNVTDTLKELYV  148 (330)
Q Consensus        77 ~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l  148 (330)
                      +-+. +++...+..  ...+..++.+.+.+|.-.+...    -..+..+..+++..|......   .....+.+++.+..
T Consensus       224 Swc~qi~~~gv~~~--~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~  301 (483)
T KOG4341|consen  224 SWCPQISGNGVQAL--QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCY  301 (483)
T ss_pred             ccCchhhcCcchHH--hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcc
Confidence            9974 444322221  2456667777777764332221    133455666665555432222   22233677888888


Q ss_pred             cCCCCCCc---cc-ccCCCCccEEEcCCccc-cc---cccccCCCCCcEEECcCCCcccc-----ccCCCCcccEEECCC
Q 020161          149 SKNEVPKM---EE-IEHFHDLQILEFGSNRL-RV---MENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQS  215 (330)
Q Consensus       149 ~~~~~~~~---~~-~~~~~~L~~L~l~~~~~-~~---~~~l~~~~~L~~L~l~~~~i~~~-----~~~~~~~L~~L~l~~  215 (330)
                      +++...+-   .. -.++++|+.+.+..+.- +.   ..--.++++|+.+++..+.....     ....++.++.+.+++
T Consensus       302 s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslsh  381 (483)
T KOG4341|consen  302 SSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSH  381 (483)
T ss_pred             cCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhh
Confidence            88765441   22 35678999999988763 21   12235778999999988754332     345778999999998


Q ss_pred             Cccccccc-------cccccccceEEccCCCCCC---CcCCCCCCCCCEEEcCCCC-CCCc---cccccCCCCCeE
Q 020161          216 NRLTSMKG-------FEECIALEELYLSHNGISK---MEGLSTLVNLHVLDVSSNK-LTLV---DDIQNLSRLEDL  277 (330)
Q Consensus       216 ~~l~~~~~-------~~~~~~L~~l~l~~~~~~~---~~~~~~~~~L~~L~l~~n~-~~~~---~~~~~~~~L~~L  277 (330)
                      +......+       ......++.+.++++....   ++.+..+++|+.+++-+++ ++..   ..-..+|+++..
T Consensus       382 ce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  382 CELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             hhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceeh
Confidence            85433321       2245668888899887654   3567788899999998875 3332   334456666543

>PLN03150 hypothetical protein; Provisional

Probab=98.14  E-value=4.3e-06  Score=79.15  Aligned_cols=102  Identities=23%  Similarity=0.340  Sum_probs=79.2

Q ss_pred             cccEEECCCCccccc--cccccccccceEEccCCCCCC-Cc-CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCC
Q 020161          207 CIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-ME-GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLN  280 (330)
Q Consensus       207 ~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~-~~-~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~  280 (330)
                      .++.|++++|.+++.  +.+..+++|+.|++++|.+.+ ++ .+..+++|+.|++++|++++.  +.+..+++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            478889999988765  357788999999999999975 44 588899999999999999865  668899999999999


Q ss_pred             CCCCC-chHHHHHHHhccccccchhhccCCCc
Q 020161          281 DNQIE-SLESIVEAVAGSRETLTTIYLENNPC  311 (330)
Q Consensus       281 ~n~l~-~~~~~~~~~~~~~~~L~~l~l~~n~~  311 (330)
                      +|+++ .++..+   .....++..+++.+|+.
T Consensus       499 ~N~l~g~iP~~l---~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        499 GNSLSGRVPAAL---GGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CCcccccCChHH---hhccccCceEEecCCcc
Confidence            99988 333222   22234566778888873

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.03  E-value=4e-06  Score=79.47  Aligned_cols=128  Identities=20%  Similarity=0.195  Sum_probs=72.3

Q ss_pred             CCCcEEECcCCCcccc-----ccCCCCcccEEECCCCcccccc---ccccccccceEEccCCCCCCCcCCCCCCCCCEEE
Q 020161          185 TNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGISKMEGLSTLVNLHVLD  256 (330)
Q Consensus       185 ~~L~~L~l~~~~i~~~-----~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~  256 (330)
                      .+|+.|++++.+.-..     .-..+|+|++|.+.+-.+....   -....|+|..||+++++++.+.+.+.+++|++|.
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            3566666665432211     2234566666666665544332   2345566667777777766666666666777776


Q ss_pred             cCCCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHH---HHhccccccchhhccCCCcc
Q 020161          257 VSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVE---AVAGSRETLTTIYLENNPCK  312 (330)
Q Consensus       257 l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~---~~~~~~~~L~~l~l~~n~~~  312 (330)
                      +.+-.+...   ..+-++++|+.||+++.+.......+.   +.-..+|.|+.||.+++.+.
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            666666543   445566677777776665443322222   22334666777766666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.84  E-value=7.9e-07  Score=72.60  Aligned_cols=95  Identities=24%  Similarity=0.310  Sum_probs=68.6

Q ss_pred             CCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCc---CCCCCCCCCEEEcCC
Q 020161          184 LTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME---GLSTLVNLHVLDVSS  259 (330)
Q Consensus       184 ~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~---~~~~~~~L~~L~l~~  259 (330)
                      +.+.+.|++-+++++++ ....++.|+.|.++-|+++.+..+..|..|++|++..|.|.++.   -+.++++|+.|.|..
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            34566777778888777 45577788888888888888877788888888888888777753   356777788888877


Q ss_pred             CCCCCc-------cccccCCCCCeEe
Q 020161          260 NKLTLV-------DDIQNLSRLEDLW  278 (330)
Q Consensus       260 n~~~~~-------~~~~~~~~L~~L~  278 (330)
                      |.-.+.       ..+..+|+|+.||
T Consensus        98 NPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   98 NPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             CCcccccchhHHHHHHHHcccchhcc
Confidence            764433       3456677777665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.79  E-value=1.5e-05  Score=64.77  Aligned_cols=106  Identities=24%  Similarity=0.219  Sum_probs=77.4

Q ss_pred             CcccEEECCCCccccccccccccccceEEccCCCCCC---CcC-CCCCCCCCEEEcCCCCCCCc---cccccCCCCCeEe
Q 020161          206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK---MEG-LSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLW  278 (330)
Q Consensus       206 ~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~---~~~-~~~~~~L~~L~l~~n~~~~~---~~~~~~~~L~~L~  278 (330)
                      ..++.+++.+..++....+..++.|+.|.++.|....   ++. ...+++|+++++++|++..+   ..+..+++|..|+
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld  122 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD  122 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence            4566677777777877778888899999999884332   332 33458999999999998766   4566777888999


Q ss_pred             CCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161          279 LNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       279 l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      +.+|..+.+.+.-..++.-+++|+.++  ++.+.+
T Consensus       123 l~n~~~~~l~dyre~vf~ll~~L~~LD--~~dv~~  155 (260)
T KOG2739|consen  123 LFNCSVTNLDDYREKVFLLLPSLKYLD--GCDVDG  155 (260)
T ss_pred             cccCCccccccHHHHHHHHhhhhcccc--ccccCC
Confidence            999987766555567777788888654  555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.65  E-value=5.2e-06  Score=60.72  Aligned_cols=106  Identities=20%  Similarity=0.292  Sum_probs=61.5

Q ss_pred             CcCEEecCCCCCCChhhh---hhcCCCCCEEeCCCCcCCccccccchhh-cccCCCcEEEccCCcCcCCCC-CCCCCccc
Q 020161           47 NLTELDLTANRLTSLDSR---ISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLEELILRDNKLMKIPD-VSIFKKLS  121 (330)
Q Consensus        47 ~L~~L~l~~~~i~~l~~~---~~~l~~L~~L~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~  121 (330)
                      .+..++++.|.+-.++..   +.....|+..++++|.+.+..    ..| ..++..+++++++|.++.+|. +..++.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp----~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFP----KKFTIKFPTATTLNLANNEISDVPEELAAMPALR  103 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCC----HHHhhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence            344555666655544443   334445555666666665531    122 234566677777777776664 66667777


Q ss_pred             EEEccCCCCcCccccccccCCCcEEEccCCCCCCc
Q 020161          122 VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM  156 (330)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  156 (330)
                      .+++..|++...+.....+.++..|+..++...++
T Consensus       104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~ei  138 (177)
T KOG4579|consen  104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEI  138 (177)
T ss_pred             hcccccCccccchHHHHHHHhHHHhcCCCCccccC
Confidence            77777777766665555555566666666655553

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.61  E-value=0.00055  Score=60.43  Aligned_cols=133  Identities=17%  Similarity=0.226  Sum_probs=76.6

Q ss_pred             cCCCcEEeccCcccccCCCCCCCCCcCEEecCCC-CCCChhhhhhcCCCCCEEeCCCC-cCCccccccchhhcccCCCcE
Q 020161           23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTAN-RLTSLDSRISHLSNLKKLSLRQN-LIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      ..+++.|+++++.+..+|  ..|++|++|.+++| .++.+|..+  .++|++|.+++| .+..     +     ...|+.
T Consensus        51 ~~~l~~L~Is~c~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~s-----L-----P~sLe~  116 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISG-----L-----PESVRS  116 (426)
T ss_pred             hcCCCEEEeCCCCCcccC--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccc-----c-----ccccce
Confidence            477888888888888887  56778888888885 555666544  257888888887 3322     1     245777


Q ss_pred             EEccCCcCcCCCCCCCC-CcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc
Q 020161          101 LILRDNKLMKIPDVSIF-KKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN  173 (330)
Q Consensus       101 L~l~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  173 (330)
                      |++.++....++   .+ ++|+.|.+.++........ ...+++|+.|.+.+|....... .-..+|+.|.++.+
T Consensus       117 L~L~~n~~~~L~---~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~-~LP~SLk~L~ls~n  187 (426)
T PRK15386        117 LEIKGSATDSIK---NVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPE-KLPESLQSITLHIE  187 (426)
T ss_pred             EEeCCCCCcccc---cCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcc-cccccCcEEEeccc
Confidence            777655433322   12 2456666543321111111 1224667777777766433211 11246777777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.51  E-value=0.0012  Score=58.35  Aligned_cols=133  Identities=17%  Similarity=0.169  Sum_probs=80.2

Q ss_pred             CCCCcCEEecCCCCCCChhhhhhcCC-CCCEEeCCCCcCCccccccchhhcccCCCcEEEccCC-cCcCCCCCCCCCccc
Q 020161           44 FPTNLTELDLTANRLTSLDSRISHLS-NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN-KLMKIPDVSIFKKLS  121 (330)
Q Consensus        44 ~~~~L~~L~l~~~~i~~l~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~L~  121 (330)
                      .+..+++|++++|.++++|    .+| +|+.|.++++.-....+.   .+  .++|++|.+++| .+..+|     .+|+
T Consensus        50 ~~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nLtsLP~---~L--P~nLe~L~Ls~Cs~L~sLP-----~sLe  115 (426)
T PRK15386         50 EARASGRLYIKDCDIESLP----VLPNELTEITIENCNNLTTLPG---SI--PEGLEKLTVCHCPEISGLP-----ESVR  115 (426)
T ss_pred             HhcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCcccCCc---hh--hhhhhheEccCcccccccc-----cccc
Confidence            3578999999999888887    244 699999988643333222   11  257889999887 666555     3477


Q ss_pred             EEEccCCCCcCccccccccCCCcEEEccCCCCCCcccc--cCCCCccEEEcCCccccc-cccccCCCCCcEEECcCC
Q 020161          122 VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI--EHFHDLQILEFGSNRLRV-MENLQNLTNLQELWLGRN  195 (330)
Q Consensus       122 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~-~~~l~~~~~L~~L~l~~~  195 (330)
                      .|++..+....+.   ..++.|+.|.+.++........  .-.++|++|.+++|.... +..+.  .+|+.|.++.+
T Consensus       116 ~L~L~~n~~~~L~---~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        116 SLEIKGSATDSIK---NVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             eEEeCCCCCcccc---cCcchHhheeccccccccccccccccCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence            7777665543322   2345677777654321111111  122578888888776532 22233  47778887665

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.41  E-value=7.8e-05  Score=60.64  Aligned_cols=102  Identities=23%  Similarity=0.243  Sum_probs=70.0

Q ss_pred             CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCC--cCCccccccchhhcccCCCcEEEccCCcCcC---CCCCCCCCcc
Q 020161           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQN--LIDDAAIEPISRWDALAGLEELILRDNKLMK---IPDVSIFKKL  120 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~~~~~L  120 (330)
                      ..++.+++.+..++++.. +-.+++|+.|.++.|  .+....  .+. ...+|.|+++++++|++..   ++++..+++|
T Consensus        43 ~~le~ls~~n~gltt~~~-~P~Lp~LkkL~lsdn~~~~~~~l--~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL  118 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTN-FPKLPKLKKLELSDNYRRVSGGL--EVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELENL  118 (260)
T ss_pred             cchhhhhhhccceeeccc-CCCcchhhhhcccCCcccccccc--eeh-hhhCCceeEEeecCCccccccccchhhhhcch
Confidence            567777888887776633 567889999999998  444421  111 2456899999999998774   4557778889


Q ss_pred             cEEEccCCCCcCcccc----ccccCCCcEEEccCC
Q 020161          121 SVFDVSFNEITSSHGL----SNVTDTLKELYVSKN  151 (330)
Q Consensus       121 ~~L~l~~~~~~~~~~~----~~~~~~L~~L~l~~~  151 (330)
                      ..|++++|....+...    +..+++|.+|+-...
T Consensus       119 ~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  119 KSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            9999999877664433    223677777665443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.36  E-value=3.2e-05  Score=56.65  Aligned_cols=106  Identities=25%  Similarity=0.296  Sum_probs=75.4

Q ss_pred             CcEEeccCcccccCCC----CCCCCCcCEEecCCCCCCChhhhhhc-CCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           26 NTVLDLTSFQLHDLDS----VEFPTNLTELDLTANRLTSLDSRISH-LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        26 l~~l~l~~~~l~~~~~----~~~~~~L~~L~l~~~~i~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      +-.++++.+.+-.++.    +.....|+..++++|.+.++|..|.. ++.++.+++++|.+++.    +..+..++.|+.
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv----PeE~Aam~aLr~  104 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV----PEELAAMPALRS  104 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc----hHHHhhhHHhhh
Confidence            3456666666655432    22235677788999988888887654 56888899999888875    223566888889


Q ss_pred             EEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccc
Q 020161          101 LILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG  135 (330)
Q Consensus       101 L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~  135 (330)
                      |+++.|.+...|. +..+.++-+|+.-.|.+-.++.
T Consensus       105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~  140 (177)
T KOG4579|consen  105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV  140 (177)
T ss_pred             cccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence            9998888887665 5567778888887777665553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.67  E-value=0.0076  Score=44.60  Aligned_cols=94  Identities=24%  Similarity=0.459  Sum_probs=35.8

Q ss_pred             ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCC
Q 020161          201 NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRL  274 (330)
Q Consensus       201 ~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L  274 (330)
                      .|..+.+++.+.+..+ +...  ..+..++.++.+.+.. .+..+  ..+..+++++.+.+..+ ++.+  ..+.++ .|
T Consensus        30 ~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l  105 (129)
T PF13306_consen   30 AFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NL  105 (129)
T ss_dssp             TTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T-
T ss_pred             hccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-Cc
Confidence            3444445555555442 3322  2344555566665543 33322  23455666666666543 4433  445555 67


Q ss_pred             CeEeCCCCCCCchHHHHHHHhccccccc
Q 020161          275 EDLWLNDNQIESLESIVEAVAGSRETLT  302 (330)
Q Consensus       275 ~~L~l~~n~l~~~~~~~~~~~~~~~~L~  302 (330)
                      +.+.+.. .++.++   ..++.+|++|+
T Consensus       106 ~~i~~~~-~~~~i~---~~~F~~~~~l~  129 (129)
T PF13306_consen  106 KEINIPS-NITKIE---ENAFKNCTKLK  129 (129)
T ss_dssp             -EEE-TT-B-SS-------GGG------
T ss_pred             eEEEECC-CccEEC---CccccccccCC
Confidence            7777665 444443   35566666653

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.64  E-value=0.00032  Score=64.68  Aligned_cols=58  Identities=21%  Similarity=0.260  Sum_probs=25.8

Q ss_pred             CCcccEEEccCCC-CcC--ccccccccCCCcEEEccCCC-CCC--c-ccccCCCCccEEEcCCcc
Q 020161          117 FKKLSVFDVSFNE-ITS--SHGLSNVTDTLKELYVSKNE-VPK--M-EEIEHFHDLQILEFGSNR  174 (330)
Q Consensus       117 ~~~L~~L~l~~~~-~~~--~~~~~~~~~~L~~L~l~~~~-~~~--~-~~~~~~~~L~~L~l~~~~  174 (330)
                      +.+|+.++++.+. ++.  +..+...+++|+.|.+.+|. +++  + .....++.|++|+++.+.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            3455555555554 221  11222224555555555454 222  1 123445556666666543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.41  E-value=0.013  Score=43.32  Aligned_cols=75  Identities=19%  Similarity=0.341  Sum_probs=26.8

Q ss_pred             CCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccE
Q 020161           46 TNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSV  122 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~  122 (330)
                      ++|+.+.+.. .+..++.. |.++++|+.+.+..+ +...   .-..|..++.++.+.+.. .+..++.  +..+++++.
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i---~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~   85 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSI---GDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN   85 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE----TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-cccc---ceeeeecccccccccccc-cccccccccccccccccc
Confidence            3455555543 34444432 445555555555443 2222   122344444555555543 2222222  333455555


Q ss_pred             EEcc
Q 020161          123 FDVS  126 (330)
Q Consensus       123 L~l~  126 (330)
                      +.+.
T Consensus        86 i~~~   89 (129)
T PF13306_consen   86 IDIP   89 (129)
T ss_dssp             EEET
T ss_pred             cccC
Confidence            5543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.03  E-value=0.0022  Score=31.23  Aligned_cols=20  Identities=55%  Similarity=0.664  Sum_probs=12.4

Q ss_pred             CcCEEecCCCCCCChhhhhh
Q 020161           47 NLTELDLTANRLTSLDSRIS   66 (330)
Q Consensus        47 ~L~~L~l~~~~i~~l~~~~~   66 (330)
                      +|++|++++|.++.+|..|+
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             TESEEEETSSEESEEGTTTT
T ss_pred             CccEEECCCCcCEeCChhhc
Confidence            35666666666666665544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=96.02  E-value=0.00017  Score=65.72  Aligned_cols=169  Identities=26%  Similarity=0.261  Sum_probs=88.6

Q ss_pred             cccEEEccCCCCcCcc-----ccccccCCCcEEEccCCCCCCc------ccccCC-CCccEEEcCCccccc------ccc
Q 020161          119 KLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSKNEVPKM------EEIEHF-HDLQILEFGSNRLRV------MEN  180 (330)
Q Consensus       119 ~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~------~~~~~~-~~L~~L~l~~~~~~~------~~~  180 (330)
                      .+.++.+.+|.+....     ......++|..|++++|.+.+.      ..+... +.++.|.+..|.++.      ...
T Consensus        88 ~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~  167 (478)
T KOG4308|consen   88 SLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV  167 (478)
T ss_pred             hHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence            3777778887765432     1122256777888888877652      223333 556666666666542      233


Q ss_pred             ccCCCCCcEEECcCCCcccc-------c----cCCCCcccEEECCCCccccc------cccccccc-cceEEccCCCCCC
Q 020161          181 LQNLTNLQELWLGRNRIKVV-------N----LCGLKCIKKISLQSNRLTSM------KGFEECIA-LEELYLSHNGISK  242 (330)
Q Consensus       181 l~~~~~L~~L~l~~~~i~~~-------~----~~~~~~L~~L~l~~~~l~~~------~~~~~~~~-L~~l~l~~~~~~~  242 (330)
                      +....+++.+++..|.+...       .    +....++++|.+.+|.++..      ..+...+. +..+++..|.+.+
T Consensus       168 L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  168 LEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             HhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcch
Confidence            44466777777777765422       1    12344555566655555433      11222223 4445555555553


Q ss_pred             C------cCCCCC-CCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCch
Q 020161          243 M------EGLSTL-VNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESL  287 (330)
Q Consensus       243 ~------~~~~~~-~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~  287 (330)
                      .      +.+... +.+++++++.|.+++.      ..+..+++++++.+.+|++.+.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~  305 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDY  305 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccH
Confidence            2      233333 4555666666655543      2234445556666666655543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.52  E-value=0.00027  Score=64.40  Aligned_cols=217  Identities=22%  Similarity=0.233  Sum_probs=137.7

Q ss_pred             CcEEEccCCcCcCCC------CCCCCCcccEEEccCCCCcCcc-----cccccc-CCCcEEEccCCCCCCc------ccc
Q 020161           98 LEELILRDNKLMKIP------DVSIFKKLSVFDVSFNEITSSH-----GLSNVT-DTLKELYVSKNEVPKM------EEI  159 (330)
Q Consensus        98 L~~L~l~~~~l~~~~------~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~-~~L~~L~l~~~~~~~~------~~~  159 (330)
                      +..+.+.+|.+....      .+...+.|..|++++|.+....     ...... ..++.|.+..|.++..      ..+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            777888888877422      2566788999999999887321     111112 4566677777777662      335


Q ss_pred             cCCCCccEEEcCCcccc------ccccc----cCCCCCcEEECcCCCcccc-------ccCCCCc-ccEEECCCCccccc
Q 020161          160 EHFHDLQILEFGSNRLR------VMENL----QNLTNLQELWLGRNRIKVV-------NLCGLKC-IKKISLQSNRLTSM  221 (330)
Q Consensus       160 ~~~~~L~~L~l~~~~~~------~~~~l----~~~~~L~~L~l~~~~i~~~-------~~~~~~~-L~~L~l~~~~l~~~  221 (330)
                      .....++.++++.|.+.      ....+    ....++++|.++.+.++..       .+...++ +..+++.+|++.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            56778888888888762      11222    3467889999998887655       3444444 66688888888755


Q ss_pred             ------cccccc-cccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCC
Q 020161          222 ------KGFEEC-IALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDN  282 (330)
Q Consensus       222 ------~~~~~~-~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n  282 (330)
                            +.+..+ +.++.+++..|.+++.      ..+..++.++++.++.|.+...      ..+.....+..+.+.++
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~  328 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT  328 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence                  345555 7788999999998874      3456777999999999998876      22334445556666655


Q ss_pred             CCCch--HHHHHHHhccccccchhhccCCCcccc
Q 020161          283 QIESL--ESIVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       283 ~l~~~--~~~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      ...+.  ......+............+++...+.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  362 (478)
T KOG4308|consen  329 GKGTRGGTSVLAEADAQRQLLSELGISGNRVGEE  362 (478)
T ss_pred             CccchhHHHHHHHHHHHhhhhHHHHhhhccchHH
Confidence            43322  123333333334444445555554443

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.06  E-value=0.016  Score=26.18  Aligned_cols=16  Identities=69%  Similarity=0.873  Sum_probs=6.8

Q ss_pred             CcCEEecCCCCCCChh
Q 020161           47 NLTELDLTANRLTSLD   62 (330)
Q Consensus        47 ~L~~L~l~~~~i~~l~   62 (330)
                      +|+.|++++|+++.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4556666666555443

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.41  E-value=0.016  Score=53.42  Aligned_cols=127  Identities=22%  Similarity=0.146  Sum_probs=84.3

Q ss_pred             CCCCCcEEECcCC-Ccccc----ccCCCCcccEEECCCC--ccccc-----cccccccccceEEccCCC-CCCC--cCC-
Q 020161          183 NLTNLQELWLGRN-RIKVV----NLCGLKCIKKISLQSN--RLTSM-----KGFEECIALEELYLSHNG-ISKM--EGL-  246 (330)
Q Consensus       183 ~~~~L~~L~l~~~-~i~~~----~~~~~~~L~~L~l~~~--~l~~~-----~~~~~~~~L~~l~l~~~~-~~~~--~~~-  246 (330)
                      .++.|+.+.+..+ .+.+.    ....++.|+.|+++++  ..+..     .....|+.|+.+++.++. +++.  ..+ 
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            4678888887765 34432    4567788999998873  11111     234567888999998887 5543  222 


Q ss_pred             CCCCCCCEEEcCCCC-CCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161          247 STLVNLHVLDVSSNK-LTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       247 ~~~~~L~~L~l~~n~-~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~  310 (330)
                      ..+++|++|.+.+|. +++.   .....++.|++|++++|..... ..+......|++++.+.+....
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-~~l~~~~~~c~~l~~l~~~~~~  332 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-SGLEALLKNCPNLRELKLLSLN  332 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH-HHHHHHHHhCcchhhhhhhhcC
Confidence            237889999988887 6655   4456788899999999885533 3334446668887776655443

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=94.19  E-value=0.026  Score=51.18  Aligned_cols=85  Identities=26%  Similarity=0.314  Sum_probs=61.0

Q ss_pred             ccccccceEEccCCCCCCCcCCC----CCCCCCEEEcCCC--CCCCccccccC--CCCCeEeCCCCCCCch----HHHHH
Q 020161          225 EECIALEELYLSHNGISKMEGLS----TLVNLHVLDVSSN--KLTLVDDIQNL--SRLEDLWLNDNQIESL----ESIVE  292 (330)
Q Consensus       225 ~~~~~L~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~n--~~~~~~~~~~~--~~L~~L~l~~n~l~~~----~~~~~  292 (330)
                      .+.+.+..+.+++|++..++.++    ..|+|+.|+|++|  .+....+++..  ..|++|.+.+|++.+-    ...+.
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence            35677888889999888876543    3579999999999  56555444433  3589999999997742    33556


Q ss_pred             HHhccccccchhhccCCCc
Q 020161          293 AVAGSRETLTTIYLENNPC  311 (330)
Q Consensus       293 ~~~~~~~~L~~l~l~~n~~  311 (330)
                      ++.+.+|+|..||  |..+
T Consensus       295 ~i~~~FPKL~~LD--G~ev  311 (585)
T KOG3763|consen  295 AIRELFPKLLRLD--GVEV  311 (585)
T ss_pred             HHHHhcchheeec--Cccc
Confidence            6677889988754  5554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.01  E-value=0.03  Score=44.23  Aligned_cols=76  Identities=20%  Similarity=0.199  Sum_probs=37.9

Q ss_pred             ccEEECCCCccccc--cccccccccceEEccCCCCCCC---cCCC-CCCCCCEEEcCCC-CCCCc--cccccCCCCCeEe
Q 020161          208 IKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM---EGLS-TLVNLHVLDVSSN-KLTLV--DDIQNLSRLEDLW  278 (330)
Q Consensus       208 L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~---~~~~-~~~~L~~L~l~~n-~~~~~--~~~~~~~~L~~L~  278 (330)
                      ++.++.+++.+...  ..+..++.++.+.+..|.--+-   +-+. -.++|+.|++++| +||+-  .++..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            44444444444322  2344455555555555443221   1111 2356777777766 35543  5566666666666


Q ss_pred             CCCCC
Q 020161          279 LNDNQ  283 (330)
Q Consensus       279 l~~n~  283 (330)
                      +.+=+
T Consensus       183 l~~l~  187 (221)
T KOG3864|consen  183 LYDLP  187 (221)
T ss_pred             hcCch
Confidence            66543

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.21  E-value=0.1  Score=41.28  Aligned_cols=80  Identities=21%  Similarity=0.191  Sum_probs=59.5

Q ss_pred             cccceEEccCCCCCC--CcCCCCCCCCCEEEcCCCC-CCCc--cccc-cCCCCCeEeCCCCC-CCchHHHHHHHhccccc
Q 020161          228 IALEELYLSHNGISK--MEGLSTLVNLHVLDVSSNK-LTLV--DDIQ-NLSRLEDLWLNDNQ-IESLESIVEAVAGSRET  300 (330)
Q Consensus       228 ~~L~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~n~-~~~~--~~~~-~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~~  300 (330)
                      ..++.++-+++.|..  ++.+..++.++.|.+.+|. +.+.  +.++ -.++|+.|++++|+ |++   .-.+-+..+++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~---~GL~~L~~lkn  177 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD---GGLACLLKLKN  177 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech---hHHHHHHHhhh
Confidence            456788888887764  5778888899999998885 4444  3332 45799999999997 664   22455778899


Q ss_pred             cchhhccCCC
Q 020161          301 LTTIYLENNP  310 (330)
Q Consensus       301 L~~l~l~~n~  310 (330)
                      |+.|.+.+-+
T Consensus       178 Lr~L~l~~l~  187 (221)
T KOG3864|consen  178 LRRLHLYDLP  187 (221)
T ss_pred             hHHHHhcCch
Confidence            9999998877

>smart00370 LRR Leucine-rich repeats, outliers

Probab=90.17  E-value=0.3  Score=24.57  Aligned_cols=18  Identities=44%  Similarity=0.610  Sum_probs=13.1

Q ss_pred             CCCCCeEeCCCCCCCchH
Q 020161          271 LSRLEDLWLNDNQIESLE  288 (330)
Q Consensus       271 ~~~L~~L~l~~n~l~~~~  288 (330)
                      +++|+.|++++|+|+.++
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00370        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            356778888888877765

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=90.17  E-value=0.3  Score=24.57  Aligned_cols=18  Identities=44%  Similarity=0.610  Sum_probs=13.1

Q ss_pred             CCCCCeEeCCCCCCCchH
Q 020161          271 LSRLEDLWLNDNQIESLE  288 (330)
Q Consensus       271 ~~~L~~L~l~~n~l~~~~  288 (330)
                      +++|+.|++++|+|+.++
T Consensus         1 L~~L~~L~L~~N~l~~lp   18 (26)
T smart00369        1 LPNLRELDLSNNQLSSLP   18 (26)
T ss_pred             CCCCCEEECCCCcCCcCC
Confidence            356778888888877765

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=87.77  E-value=0.42  Score=23.49  Aligned_cols=16  Identities=44%  Similarity=0.462  Sum_probs=9.9

Q ss_pred             CCCCCeEeCCCCCCCc
Q 020161          271 LSRLEDLWLNDNQIES  286 (330)
Q Consensus       271 ~~~L~~L~l~~n~l~~  286 (330)
                      +++|+.|++++|+|++
T Consensus         1 ~~~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    1 NPNLETLDLSNNQITD   16 (24)
T ss_dssp             -TT-SEEE-TSSBEHH
T ss_pred             CCCCCEEEccCCcCCH
Confidence            4677888888888774

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=85.54  E-value=0.56  Score=23.71  Aligned_cols=18  Identities=44%  Similarity=0.656  Sum_probs=12.6

Q ss_pred             CCcCEEecCCCCCCChhh
Q 020161           46 TNLTELDLTANRLTSLDS   63 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~   63 (330)
                      +.|+.|++++|+++++|.
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            467777777777777665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.94  E-value=0.67  Score=23.48  Aligned_cols=16  Identities=38%  Similarity=0.628  Sum_probs=11.1

Q ss_pred             CCCCeEeCCCCCCCch
Q 020161          272 SRLEDLWLNDNQIESL  287 (330)
Q Consensus       272 ~~L~~L~l~~n~l~~~  287 (330)
                      ++|+.|+++.|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4677777777777654

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=81.97  E-value=0.75  Score=42.16  Aligned_cols=79  Identities=27%  Similarity=0.285  Sum_probs=53.0

Q ss_pred             CCCCCCCEEEcCCCCCCCcccc----ccCCCCCeEeCCCC--CCCchHHHHHHHhccccccchhhccCCCccccc-----
Q 020161          247 STLVNLHVLDVSSNKLTLVDDI----QNLSRLEDLWLNDN--QIESLESIVEAVAGSRETLTTIYLENNPCKIFK-----  315 (330)
Q Consensus       247 ~~~~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n--~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~-----  315 (330)
                      ...+.+..+++++|++-.++.+    ...|+|+.|+|++|  .+.+. ..+..  -....|+.|.+.|||+...-     
T Consensus       215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~-~el~K--~k~l~Leel~l~GNPlc~tf~~~s~  291 (585)
T KOG3763|consen  215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSE-SELDK--LKGLPLEELVLEGNPLCTTFSDRSE  291 (585)
T ss_pred             cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcch-hhhhh--hcCCCHHHeeecCCccccchhhhHH
Confidence            3557888999999998877332    34689999999999  55542 22232  23366999999999964332     


Q ss_pred             cccccccCCCCCC
Q 020161          316 LFCYPQTNFPKYT  328 (330)
Q Consensus       316 ~~~~~~~~~p~~~  328 (330)
                      -+......|||+.
T Consensus       292 yv~~i~~~FPKL~  304 (585)
T KOG3763|consen  292 YVSAIRELFPKLL  304 (585)
T ss_pred             HHHHHHHhcchhe
Confidence            2223445677753

>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]

Probab=80.67  E-value=9.2  Score=34.75  Aligned_cols=21  Identities=19%  Similarity=0.105  Sum_probs=13.6

Q ss_pred             cCCCCCEEeCCCCcCCccccc
Q 020161           67 HLSNLKKLSLRQNLIDDAAIE   87 (330)
Q Consensus        67 ~l~~L~~L~l~~~~~~~~~~~   87 (330)
                      .-+.+++++++.|.+.+..+-
T Consensus       163 pnpr~r~~dls~npi~dkvpi  183 (553)
T KOG4242|consen  163 PNPRARQHDLSPNPIGDKVPI  183 (553)
T ss_pred             CcchhhhhccCCCcccccCCc
Confidence            345677777777776665443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	330
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-15
2omt_A	462	Crystal Structure Of Inla G194s+sHEC1 COMPLEX Lengt		7e-07
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		7e-15
2omx_A	462	Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX		4e-07
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		1e-14
2omu_A	462	Crystal Structure Of Inla G194s+s Y369s/hec1 Comple		7e-07
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		4e-13
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		5e-13
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		6e-13
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		8e-13
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		3e-11
4fmz_A	347	Crystal Structure Of An Internalin (Inlf) From List		9e-07
1h6u_A	308	Internalin H: Crystal Structure Of Fused N-Terminal		5e-09
4fho_A	231	Crystal Structure Of An Internalin C2 (Inlc2) From		5e-09
1ds9_A	198	Solution Structure Of Chlamydomonas Outer Arm Dynei		5e-07
1m9l_A	199	Relaxation-Based Refined Structure Of Chlamydomonas		5e-07
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		3e-06
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		4e-06
4aw4_A	311	Engineered Variant Of Listeria Monocytogenes Inlb I		6e-06
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		7e-06
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		6e-05
2r9u_A	174	Crystal Structure Of Lamprey Variable Lymphocyte Re		7e-05
1xeu_A	263	Crystal Structure Of Internalin C From Listeria Mon		1e-04
3b2d_A	603	Crystal Structure Of Human Rp105MD-1 Complex Length		1e-04
3t6q_A	606	Crystal Structure Of Mouse Rp105MD-1 Complex Length		5e-04
1otm_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		5e-04
1otn_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		6e-04
1oto_A	236	Calcium-Binding Mutant Of The Internalin B Lrr Doma		6e-04
1d0b_A	213	Internalin B Leucine Rich Repeat Domain Length = 21		6e-04
1m9s_A	605	Crystal Structure Of Internalin B (Inlb), A Listeri		9e-04

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 25/305 (8%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 44  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L  S N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 154 QQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 273
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN----NPC----KIF 314
           + +  +  L+ L +L LN+NQ+E +  I         T  T+Y  N    +P     K+ 
Sbjct: 274 SNISPLAGLTALTNLELNENQLEDISPISNL---KNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 315 KLFCY 319
           +LF Y
Sbjct: 331 RLFFY 335

>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 135 GLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXX 186
           G +NVTDT+ +        L   +  +  ++ +E+ ++L  + F +N+L  +        
Sbjct: 27  GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK 86
Query: 187 XXXXXXGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245
                   N+I  +  L  L  +  ++L +N++T +   +    L  L LS N IS +  
Sbjct: 87  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 146
Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
           LS L +L  L  SSN++T +  + NL+ LE L ++ N++  +  + +
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 77.8 bits (190), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 82/305 (26%), Positives = 143/305 (46%), Gaps = 25/305 (8%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 44  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L  S N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 154 QQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 273
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN----NPC----KIF 314
           + +  +  L+ L +L LN+NQ+E +  I         T  T+Y  N    +P     K+ 
Sbjct: 274 SNISPLAGLTALTNLELNENQLEDISPISNL---KNLTYLTLYFNNISDISPVSSLTKLQ 330
Query: 315 KLFCY 319
           +LF Y
Sbjct: 331 RLFFY 335

>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX Length = 462

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 81/167 (48%), Gaps = 9/167 (5%)
Query: 135 GLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXX 186
           G +NVTDT+ +        L   +  +  ++ +E+ ++L  + F +N+L  +        
Sbjct: 27  GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK 86
Query: 187 XXXXXXGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245
                   N+I  +  L  L  +  ++L +N++T +   +    L  L LS N IS +  
Sbjct: 87  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 146
Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
           LS L +L  L+ SSN++T +  + NL+ LE L ++ N++  +  + +
Sbjct: 147 LSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 130/268 (48%), Gaps = 14/268 (5%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 44  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L  S N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 154 QQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 213
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 214 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 273
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
           + +  +  L+ L +L LN+NQ+E +  I
Sbjct: 274 SNISPLAGLTALTNLELNENQLEDISPI 301

>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex Length = 462

Iteration: 1
 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 80/167 (47%), Gaps = 9/167 (5%)
Query: 135 GLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXX 186
           G +NVTDT+ +        L   +  +  ++ +E+ ++L  + F +N+L  +        
Sbjct: 27  GKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTK 86
Query: 187 XXXXXXGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG 245
                   N+I  +  L  L  +  ++L +N++T +   +    L  L LS N IS +  
Sbjct: 87  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA 146
Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
           LS L +L  L  SSN++T +  + NL+ LE L ++ N++  +  + +
Sbjct: 147 LSGLTSLQQLSFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 193

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 72.0 bits (175), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 26/305 (8%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 49  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 104
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 105 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 158
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L    N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 159 QQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 217
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 218 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 277
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN----NPC----KIF 314
           + +  +  L+ L +L LN+NQ+E +  I         T  T+Y  N    +P     K+ 
Sbjct: 278 SNISPLAGLTALTNLELNENQLEDISPISNL---KNLTYLTLYFNNISDISPVSSLTKLQ 334
Query: 315 KLFCY 319
           +LF Y
Sbjct: 335 RLFFY 339

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 71.6 bits (174), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 142/305 (46%), Gaps = 26/305 (8%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 44  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L    N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 154 QQLNFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 212
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 213 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 272
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN----NPC----KIF 314
           + +  +  L+ L +L LN+NQ+E +  I         T  T+Y  N    +P     K+ 
Sbjct: 273 SNISPLAGLTALTNLELNENQLEDISPISNL---KNLTYLTLYFNNISDISPVSSLTKLQ 329
Query: 315 KLFCY 319
           +LF Y
Sbjct: 330 RLFFY 334

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 71.6 bits (174), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 48  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 103
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 104 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 157
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L    N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 158 QQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 216
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 217 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 276
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
           + +  +  L+ L +L LN+NQ+E +  I
Sbjct: 277 SNISPLAGLTALTNLELNENQLEDISPI 304

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 129/268 (48%), Gaps = 15/268 (5%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLS---LRQNLIDD 83
           T L      +  +D VE+  NLT+++ + N+LT     I+ L NL KL    +  N I D
Sbjct: 44  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTD----ITPLKNLTKLVDILMNNNQIAD 99
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I P++    L GL    L +N++  I  +     L+  ++S N I+    LS +T +L
Sbjct: 100 --ITPLANLTNLTGLT---LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SL 153
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC 203
           ++L    N+V  ++ + +   L+ L+  SN++  +                N+I  +   
Sbjct: 154 QQLNFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPL 212
Query: 204 G-LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G L  + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N++
Sbjct: 213 GILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQI 272
Query: 263 TLVDDIQNLSRLEDLWLNDNQIESLESI 290
           + +  +  L+ L +L LN+NQ+E +  I
Sbjct: 273 SNISPLAGLTALTNLELNENQLEDISPI 300

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 66.2 bits (160), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 129/281 (45%), Gaps = 20/281 (7%)
Query: 35  QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL-IDDAAIEPISRWD 93
           ++  +  +E+ TNL  L+L  N++T     IS LSNL KL+   NL I    I  IS   
Sbjct: 55  KVASIQGIEYLTNLEYLNLNGNQITD----ISPLSNLVKLT---NLYIGTNKITDISALQ 107
Query: 94  ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNE-ITSSHGLSNVTDTLKELYVSKNE 152
            L  L EL L ++ +  I  ++   K    ++  N  ++    LSN T  L  L V++++
Sbjct: 108 NLTNLRELYLNEDNISDISPLANLTKXYSLNLGANHNLSDLSPLSNXTG-LNYLTVTESK 166
Query: 153 VPKMEEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIK----VVNLCGLKCI 208
           V  +  I +  DL  L    N++  +                N+I     V N   L  +
Sbjct: 167 VKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANXTRLNSL 226
Query: 209 KKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDI 268
           K   + +N++T +        L  L +  N IS +  +  L  L  L+V SN+++ +  +
Sbjct: 227 K---IGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKXLNVGSNQISDISVL 283
Query: 269 QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
            NLS+L  L+LN+NQ+ + +     V G    LTT++L  N
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDX---EVIGGLTNLTTLFLSQN 321

>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria Monocytogenes Str. 4b F2365 At 1.91 A Resolution Length = 347

Iteration: 1
 Score = 50.8 bits (120), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 29/87 (33%), Positives = 51/87 (58%)
Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264
           L+ I K+ +   ++ S++G E    LE L L+ N I+ +  LS LV L  L + +NK+T 
Sbjct: 43  LESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITD 102
Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIV 291
           +  +QNL+ L +L+LN++ I  +  + 
Sbjct: 103 ISALQNLTNLRELYLNEDNISDISPLA 129

>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal Domains Length = 308

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/191 (26%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 128 NEITSSHGLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMX 179
           N I  + G SNVTDT+ +        L      V  +E +++ ++L  LE   N++  + 
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79
Query: 180 XXXXXXXXXXXXXGRNRIKVVN-LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238
                          N +K V+ + GL+ IK + L S ++T +        L+ LYL  N
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139
Query: 239 GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
            I+ +  L+ L NL  L + + +++ +  + NLS+L  L  +DN+I  +  +      S 
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL-----ASL 194
Query: 299 ETLTTIYLENN 309
             L  ++L+NN
Sbjct: 195 PNLIEVHLKNN 205

>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From Listeria Monocytogenes Str. 4b F2365 At 1.90 A Resolution Length = 231

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 89/191 (46%), Gaps = 14/191 (7%)
Query: 128 NEITSSHGLSNVTDTLKE--------LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMX 179
           N + ++ G SNVTD + +        L      V  +E I++ ++L  LE   N++  + 
Sbjct: 26  NAVKTATGKSNVTDAVTQADLDGIATLSAFNTGVTTIEGIQYLNNLIGLELKDNQITDLT 85
Query: 180 XXXXXXXXXXXXXGRNRIKVVN-LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238
                          N +K V+ + GL+ IK + L S ++T +        L+ LYL  N
Sbjct: 86  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 145
Query: 239 GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
            I+ +  L+ L NL  L + +N++  +  + NLS+L  L  +DN+I  +  +      S 
Sbjct: 146 QITNISPLAGLTNLQYLSIGNNQVNDLTPLANLSKLTTLRADDNKISDISPL-----ASL 200
Query: 299 ETLTTIYLENN 309
             L  ++L++N
Sbjct: 201 PNLIEVHLKDN 211

>pdb|1DS9|A Chain A, Solution Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 198

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 198 KVVNLCGLKCIKKISLQSNRLTSMKGFEECI-ALEELYLSHNGISKMEGLSTLVNLHVLD 256
           K+ +L G++ ++ +SL  N +  ++  +     LEEL++S+N I+ + G+  LVNL VL 
Sbjct: 62  KISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 121
Query: 257 VSSNKLT---LVDDIQNLSRLEDLWLNDNQI 284
           +S+NK+T    +D +  L +LEDL L  N +
Sbjct: 122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>pdb|1M9L|A Chain A, Relaxation-Based Refined Structure Of Chlamydomonas Outer Arm Dynein Light Chain 1 Length = 199

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 198 KVVNLCGLKCIKKISLQSNRLTSMKGFEECI-ALEELYLSHNGISKMEGLSTLVNLHVLD 256
           K+ +L G++ ++ +SL  N +  ++  +     LEEL++S+N I+ + G+  LVNL VL 
Sbjct: 63  KISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLY 122
Query: 257 VSSNKLT---LVDDIQNLSRLEDLWLNDNQI 284
           +S+NK+T    +D +  L +LEDL L  N +
Sbjct: 123 MSNNKITNWGEIDKLAALDKLEDLLLAGNPL 153

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 156/352 (44%), Gaps = 57/352 (16%)
Query: 9   PSAEATNPDQAV------------EIDLSNTVLDLTSFQLHDLDSVEFPT--NLTELDLT 54
           P  E +  D+AV             I     +LDL   ++  L+  EF +  +L EL+L 
Sbjct: 5   PRCECSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64
Query: 55  ANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD 113
            N +++++    ++L NL+ L LR N +    + P+  +  L+ L +L + +NK++ + D
Sbjct: 65  ENIVSAVEPGAFNNLFNLRTLGLRSNRLK---LIPLGVFTGLSNLTKLDISENKIVILLD 121
Query: 114 VSI--FKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQIL 168
                   L   +V  N++   SH   +  ++L++L + K  +  +  E + H H L +L
Sbjct: 122 YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVL 181
Query: 169 EFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLCGLK--------CIKKISLQSNRLTS 220
                RLR +                 R+KV+ +            C+  ++L S  +T 
Sbjct: 182 -----RLRHLNINAIRDYSFKRLY---RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITH 233
Query: 221 MK-------GFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQ 269
                         + L  L LS+N IS +EG  L  L+ L  + +   +L +V+    +
Sbjct: 234 CNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFR 293
Query: 270 NLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP----CKIFKLF 317
            L+ L  L ++ NQ+ +LE   E+V  S   L T+ L++NP    C++  +F
Sbjct: 294 GLNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLILDSNPLACDCRLLWVF 342

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 48.9 bits (115), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/130 (33%), Positives = 72/130 (55%), Gaps = 9/130 (6%)
Query: 29  LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIE 87
           L L   +LHD+ +++  TNLT L LT N+L SL + +   L+NLK+L L +N +      
Sbjct: 68  LALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL--- 124
Query: 88  PISRWDALAGLEELILRDNKLMKIPDVSIFKK---LSVFDVSFNEITS-SHGLSNVTDTL 143
           P   +D L  L  L L  N+L  +P   +F K   L+  D+S+N++ S   G+ +    L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPK-GVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQL 183
Query: 144 KELYVSKNEV 153
           K+L + +N++
Sbjct: 184 KDLRLYQNQL 193

>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb Internalin Domain With An Additional Leucine Rich Repeat Inserted Length = 311

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/163 (27%), Positives = 79/163 (48%), Gaps = 19/163 (11%)
Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI----- 81
           T L+L++ Q+ D+  +++  N+T+L L  N+LT +   +++L NL  L L +N +     
Sbjct: 69  TSLNLSNNQITDISPIQYLPNVTKLFLNGNKLTDI-KPLANLKNLGWLFLDENKVKDLSS 127
Query: 82  ------------DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNE 129
                       +   I  I+    L  LE L L +NK+  I  +S   KL    +  N+
Sbjct: 128 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 187
Query: 130 ITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
           I+    L+ +T  L+ LY+SKN +  +  +    +L +LE  S
Sbjct: 188 ISDIVPLAGLT-KLQNLYLSKNHISDLRALAGLKNLDVLELFS 229

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 48.1 bits (113), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 97/204 (47%), Gaps = 23/204 (11%)
Query: 117 FKKLSVFD-VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL 175
            KK SV D V+ NE+ S          + ++  + +++  ++ I++  +++ L  G N+L
Sbjct: 26  LKKKSVTDAVTQNELNS----------IDQIIANNSDIKSVQGIQYLPNVRYLALGGNKL 75
Query: 176 RVMXXXXXXXXXXXXXXGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIAL 230
             +                N+++ +       L  +K++ L  N+L S+    F++   L
Sbjct: 76  HDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135
Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES 286
             LYL HN +  +       L NL  LD+ +N+L  + +     L++L+ L LNDNQ   
Sbjct: 136 TYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQ--- 192
Query: 287 LESIVEAVAGSRETLTTIYLENNP 310
           L+S+ + V     +LT I+L NNP
Sbjct: 193 LKSVPDGVFDRLTSLTHIWLLNNP 216

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 84/175 (48%), Gaps = 28/175 (16%)
Query: 29  LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISH-LSNLKKLSLRQN-------- 79
           +D +S +L  + S   P +  +LDL +N+L+SL S+  H L+ L+ L L  N        
Sbjct: 21  VDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
Query: 80  -----------LIDDAAIE--PISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD 124
                       + D  ++  PI  +D L  L EL L  N+L  +P        KL+   
Sbjct: 80  IFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLS 139
Query: 125 VSFNEITS-SHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLR 176
           + +NE+ S   G+ +   +LKEL +  N++ ++ E   +   +L+ L+  +N+L+
Sbjct: 140 LGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLK 194

>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor 2913 Ectodomain Length = 174

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES 286
           + L+L++N I+K+E      LVNL  L  +SNKLT +       L++L  L LNDN    
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH--- 92
Query: 287 LESIVEAVAGSRETLTTIYLENNP 310
           L+SI      + ++LT IYL NNP
Sbjct: 93  LKSIPRGAFDNLKSLTHIYLYNNP 116

>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria Monocytogenes Length = 263

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 17/118 (14%)
Query: 36  LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQN---------------- 79
           +  L  ++F TNL EL L+ N+++ L S +  L+ L++LS+ +N                
Sbjct: 53  IQSLAGMQFFTNLKELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRL 111
Query: 80  LIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
            +D+  +        L  LE L +R+NKL  I  +    KL V D+  NEIT++ GL+
Sbjct: 112 FLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLT 169

>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex Length = 603

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 76/284 (26%), Positives = 123/284 (43%), Gaps = 45/284 (15%)
Query: 29  LDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           L+L   +  D+ S  F   T L ELDLTA  L  L S +  L+ LKKL L  N  D    
Sbjct: 256 LNLQEHRFSDISSTTFQCFTQLQELDLTATHLKGLPSGMKGLNLLKKLVLSVNHFDQLCQ 315
Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSSHG----LSNV 139
              + + +L     L +R N       V   +KL      D+S N+I +S      L N+
Sbjct: 316 ISAANFPSLT---HLYIRGNVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNL 372
Query: 140 TDTLKELYVSKNEVPKMEEIEHFHD---LQILEFGSNRLRVMXXXXXXXXXXXXXXGRNR 196
           +  L+ L +S NE P   + + F +   L++L+    RL +                 + 
Sbjct: 373 SH-LQTLNLSHNE-PLGLQSQAFKECPQLELLDLAFTRLHI-------NAPQSPFQNLHF 423
Query: 197 IKVVN-------------LCGLKCIKKISLQSNR-----LTSMKGFEECIALEELYLSHN 238
           ++V+N             L GL  ++ ++L+ N      +T     +   +LE L LS  
Sbjct: 424 LQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKTNLLQTVGSLEVLILSSC 483
Query: 239 GISKM--EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLN 280
           G+  +  +   +L  +  +D+S N LT  D I +LS L+ ++LN
Sbjct: 484 GLLSIDQQAFHSLGKMSHVDLSHNSLT-CDSIDSLSHLKGIYLN 526

>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex Length = 606

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 80/297 (26%), Positives = 133/297 (44%), Gaps = 48/297 (16%)
Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
           + L ELDLTA  L+ L S +  LS LKKL L  N  ++      S + +L  L   I  +
Sbjct: 278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS--IKGN 335
Query: 106 NKLMKIPDVSI--FKKLSVFDVSFNEITSSHG----LSNVTDTLKELYVSKNEVP---KM 156
            K +++    +   + L   D+S ++I +S      L N++  L+ L +S NE P   K 
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-LQSLNLSYNE-PLSLKT 393
Query: 157 EEIEHFHDLQILEFGSNRLRVMXXXXXXXXXXXXXXGRNRIKVVNLC------------- 203
           E  +    L++L+    RL+V                 + +KV+NL              
Sbjct: 394 EAFKECPQLELLDLAFTRLKV-------KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446
Query: 204 GLKCIKKISLQSNR-----LTSMKGFEECIALEELYLSHNGISKME--GLSTLVNLHVLD 256
           GL  ++ ++LQ N      +      +    LE L LS   +S ++    ++L  ++ +D
Sbjct: 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVD 506
Query: 257 VSSNKLTLVDDIQNLSRLEDLWLN--DNQIE-SLESIVEAVAGSRETLTTIYLENNP 310
           +S N+LT    I+ LS L+ ++LN   N I   L S++  ++  R    TI L  NP
Sbjct: 507 LSHNRLT-SSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQR----TINLRQNP 558

>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 42.0 bits (97), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 36  LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-------------- 81
           +  +  +++  N+T+L L  N+LT +   +++L NL  L L +N I              
Sbjct: 76  IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 134
Query: 82  ---DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
              +   I  I+    L  LE L L +NK+  I  +S   KL    +  N+I+    L+ 
Sbjct: 135 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 194
Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
           +T  L+ LY+SKN +  +  +    +L +LE  S
Sbjct: 195 LTK-LQNLYLSKNHISDLRALAGLKNLDVLELFS 227

>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 36  LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-------------- 81
           +  +  +++  N+T+L L  N+LT +   +++L NL  L L +N I              
Sbjct: 76  IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 134
Query: 82  ---DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
              +   I  I+    L  LE L L +NK+  I  +S   KL    +  N+I+    L+ 
Sbjct: 135 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 194
Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
           +T  L+ LY+SKN +  +  +    +L +LE  S
Sbjct: 195 LT-KLQNLYLSKNHISDLRALAGLKNLDVLELFS 227

>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain Length = 236

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 36  LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-------------- 81
           +  +  +++  N+T+L L  N+LT +   +++L NL  L L +N I              
Sbjct: 76  IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 134
Query: 82  ---DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
              +   I  I+    L  LE L L +NK+  I  +S   KL    +  N+I+    L+ 
Sbjct: 135 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 194
Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
           +T  L+ LY+SKN +  +  +    +L +LE  S
Sbjct: 195 LT-KLQNLYLSKNHISDLRALAGLKNLDVLELFS 227

>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain Length = 213

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 41  SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-----------------DD 83
            +++  N+T+L L  N+LT +   +++L NL  L L +N I                 + 
Sbjct: 58  GIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEH 116
Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             I  I+    L  LE L L +NK+  I  +S   KL    +  N+I+    L+ +T  L
Sbjct: 117 NGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLT-KL 175
Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGS 172
           + LY+SKN +  +  +    +L +LE  S
Sbjct: 176 QNLYLSKNHISDLRALAGLKNLDVLELFS 204

>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria Monocytogenes Virulence Protein Containing Sh3-Like Domains Length = 605

Iteration: 1
 Score = 41.2 bits (95), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 71/154 (46%), Gaps = 19/154 (12%)
Query: 36  LHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI-------------- 81
           +  +  +++  N+T+L L  N+LT +   +++L NL  L L +N I              
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKS 113
Query: 82  ---DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
              +   I  I+    L  LE L L +NK+  I  +S   KL    +  N+I+    L+ 
Sbjct: 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 173
Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS 172
           +T  L+ LY+SKN +  +  +    +L +LE  S
Sbjct: 174 LTK-LQNLYLSKNHISDLRALAGLKNLDVLELFS 206

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	330
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-67
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-51
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-46
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-41
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-36
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-34
1o6v_A	466	Internalin A; bacterial infection, extracellular r	6e-56
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-51
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-50
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-50
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-32
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-49
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-47
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-28
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-47
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-44
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-43
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-26
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-38
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	6e-35
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-24
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-36
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-36
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-31
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-27
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-33
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-31
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-33
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-30
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	5e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-32
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-27
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-23
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-32
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-29
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-32
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-26
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-11
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-24
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-14
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-32
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-19
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-13
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-31
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-19
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-31
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-31
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-30
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-30
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-25
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-15
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-29
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-10
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-22
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-28
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-15
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-28
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-23
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-18
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-28
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	7e-17
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-28
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-27
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-25
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-27
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-26
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-25
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-25
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-23
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-22
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-18
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-19
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-16
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-14
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	8e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-14
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-20
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-19
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-10
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-19
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-18
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-18
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-17
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	4e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-16
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	5e-16
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-15
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-08
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	5e-15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-15
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	5e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-14
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-13
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-08
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-11
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	5e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-10
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	9e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-08
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	7e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	6e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	9e-08
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-06
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	1e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-06
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	2e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	3e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-06
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	3e-05
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-04

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  212 bits (543), Expect = 6e-67
 Identities = 75/286 (26%), Positives = 139/286 (48%), Gaps = 12/286 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L +   ++  +  +E+ TNL  L+L  N++T +   +S+L  L  L +  N I D  I
Sbjct: 47  TKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITD--I 103

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKE 145
             +     L  L EL L ++ +  I  ++   K+   ++  N   S    LSN+T  L  
Sbjct: 104 SALQ---NLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMT-GLNY 159

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCG 204
           L V++++V  +  I +  DL  L    N++  +  L +LT+L       N+I  +  +  
Sbjct: 160 LTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVAN 219

Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264
           +  +  + + +N++T +        L  L +  N IS +  +  L  L +L+V SN+++ 
Sbjct: 220 MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISD 279

Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           +  + NLS+L  L+LN+NQ+ +    +E + G    LTT++L  N 
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNE--DMEVI-GGLTNLTTLFLSQNH 322

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  171 bits (435), Expect = 6e-51
 Identities = 60/285 (21%), Positives = 121/285 (42%), Gaps = 14/285 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             L      ++ +             L    +T + +    L ++ KL +    +    I
Sbjct: 3   ATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVAS--I 59

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
           + I     L  LE L L  N++  I  +S   KL+   +  N+IT    L N+T  L+EL
Sbjct: 60  QGIEY---LTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLT-NLREL 115

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRL-RVMENLQNLTNLQELWLGRNRIKVV-NLCG 204
           Y++++ +  +  + +   +  L  G+N     +  L N+T L  L +  +++K V  +  
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIAN 175

Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL 264
           L  +  +SL  N++  +       +L       N I+ +  ++ +  L+ L + +NK+T 
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD 235

Query: 265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
           +  + NLS+L  L +  NQI  + ++          L  + + +N
Sbjct: 236 LSPLANLSQLTWLEIGTNQISDINAV-----KDLTKLKMLNVGSN 275

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  159 bits (405), Expect = 2e-46
 Identities = 57/262 (21%), Positives = 130/262 (49%), Gaps = 9/262 (3%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L + + ++ D+ +++  TNL EL L  + ++ +   +++L+ +  L+L  N      +
Sbjct: 91  TNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHN----L 145

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +S    + GL  L + ++K+  +  ++    L    +++N+I     L+++T  L   
Sbjct: 146 SDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTS-LHYF 204

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL 205
               N++  +  + +   L  L+ G+N++  +  L NL+ L  L +G N+I  +  +  L
Sbjct: 205 TAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDL 264

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK--MEGLSTLVNLHVLDVSSNKLT 263
             +K +++ SN+++ +        L  L+L++N +    ME +  L NL  L +S N +T
Sbjct: 265 TKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHIT 324

Query: 264 LVDDIQNLSRLEDLWLNDNQIE 285
            +  + +LS+++     +  I+
Sbjct: 325 DIRPLASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 7e-41
 Identities = 48/241 (19%), Positives = 108/241 (44%), Gaps = 13/241 (5%)

Query: 71  LKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEI 130
              L+     I+   I P +    LA     +L+   +  +      + ++   V+  ++
Sbjct: 2   AATLATLPAPINQ--IFPDA---DLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKV 56

Query: 131 TSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQEL 190
            S  G+  +T+ L+ L ++ N++  +  + +   L  L  G+N++  +  LQNLTNL+EL
Sbjct: 57  ASIQGIEYLTN-LEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLREL 115

Query: 191 WLGRNRIKVV-NLCGLKCIKKISLQSNRLTS-MKGFEECIALEELYLSHNGISKMEGLST 248
           +L  + I  +  L  L  +  ++L +N   S +        L  L ++ + +  +  ++ 
Sbjct: 116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIAN 175

Query: 249 LVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN 308
           L +L+ L ++ N++  +  + +L+ L       NQI  +  +      +   L ++ + N
Sbjct: 176 LTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPV-----ANMTRLNSLKIGN 230

Query: 309 N 309
           N
Sbjct: 231 N 231

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  131 bits (332), Expect = 7e-36
 Identities = 48/215 (22%), Positives = 92/215 (42%), Gaps = 8/215 (3%)

Query: 97  GLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM 156
           G   L      + +I   +   +     +    +T       +  ++ +L V+  +V  +
Sbjct: 1   GAATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELE-SITKLVVAGEKVASI 59

Query: 157 EEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQS 215
           + IE+  +L+ L    N++  +  L NL  L  L++G N+I  +  L  L  ++++ L  
Sbjct: 60  QGIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNE 119

Query: 216 NRLTSMKGFEECIALEELYLSHN-GISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRL 274
           + ++ +        +  L L  N  +S +  LS +  L+ L V+ +K+  V  I NL+ L
Sbjct: 120 DNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDL 179

Query: 275 EDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
             L LN NQIE +  +      S  +L       N
Sbjct: 180 YSLSLNYNQIEDISPL-----ASLTSLHYFTAYVN 209

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  126 bits (319), Expect = 6e-34
 Identities = 52/220 (23%), Positives = 103/220 (46%), Gaps = 11/220 (5%)

Query: 27  TVLDLTSFQL-HDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAA 85
             L+L +     DL  +   T L  L +T +++  +   I++L++L  LSL  N I+D  
Sbjct: 135 YSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIED-- 191

Query: 86  IEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKE 145
           I P++    L  L       N++  I  V+   +L+   +  N+IT    L+N++  L  
Sbjct: 192 ISPLAS---LTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQ-LTW 247

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN---L 202
           L +  N++  +  ++    L++L  GSN++  +  L NL+ L  L+L  N++   +   +
Sbjct: 248 LEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVI 307

Query: 203 CGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK 242
            GL  +  + L  N +T ++       ++    ++  I K
Sbjct: 308 GGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIKK 347

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  187 bits (477), Expect = 6e-56
 Identities = 78/284 (27%), Positives = 143/284 (50%), Gaps = 14/284 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L      +  +D VE+  NLT+++ + N+LT +   + +L+ L  + +  N I D  I
Sbjct: 49  TTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD--I 105

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
            P++    L  L  L L +N++  I  +     L+  ++S N I+    LS +T +L++L
Sbjct: 106 TPLAN---LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT-SLQQL 161

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL 205
               N+V  ++ + +   L+ L+  SN++  +  L  LTNL+ L    N+I  +  L  L
Sbjct: 162 SFG-NQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 220

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
             + ++SL  N+L  +        L +L L++N IS +  LS L  L  L + +N+++ +
Sbjct: 221 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 280

Query: 266 DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
             +  L+ L +L LN+NQ+E +  I      + + LT + L  N
Sbjct: 281 SPLAGLTALTNLELNENQLEDISPI-----SNLKNLTYLTLYFN 319

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  176 bits (448), Expect = 1e-51
 Identities = 76/286 (26%), Positives = 138/286 (48%), Gaps = 14/286 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L L + Q+ D+D ++  TNL  L+L++N ++ + + +S L++L++LS    + D   +
Sbjct: 115 TGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTD---L 170

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
           +P++    L  LE L +  NK+  I  ++    L     + N+I+    L  +T  L EL
Sbjct: 171 KPLAN---LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT-NLDEL 226

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGL 205
            ++ N++  +  +    +L  L+  +N++  +  L  LT L EL LG N+I  +  L GL
Sbjct: 227 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGL 286

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
             +  + L  N+L  +        L  L L  N IS +  +S+L  L  L   +NK++ V
Sbjct: 287 TALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV 346

Query: 266 DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311
             + NL+ +  L    NQI  L  +      +   +T + L +   
Sbjct: 347 SSLANLTNINWLSAGHNQISDLTPL-----ANLTRITQLGLNDQAW 387

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  173 bits (440), Expect = 1e-50
 Identities = 69/285 (24%), Positives = 142/285 (49%), Gaps = 14/285 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             + + + Q+ D+  +   TNLT L L  N++T +D  + +L+NL +L L  N I D  I
Sbjct: 93  VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNTISD--I 149

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +S    L  L++L    N++  +  ++    L   D+S N+++    L+ +T  L+ L
Sbjct: 150 SALSG---LTSLQQLSF-GNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT-NLESL 204

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL 205
             + N++  +  +    +L  L    N+L+ +  L +LTNL +L L  N+I  +  L GL
Sbjct: 205 IATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGL 264

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
             + ++ L +N+++++       AL  L L+ N +  +  +S L NL  L +  N ++ +
Sbjct: 265 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDI 324

Query: 266 DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
             + +L++L+ L+  +N++  + S+      +   +  +   +N 
Sbjct: 325 SPVSSLTKLQRLFFYNNKVSDVSSL-----ANLTNINWLSAGHNQ 364

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  173 bits (440), Expect = 2e-50
 Identities = 64/275 (23%), Positives = 123/275 (44%), Gaps = 12/275 (4%)

Query: 35  QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94
            ++ + +        +  L    +T   S  + L  +  L   +  I    I+ +     
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKS--IDGVEY--- 66

Query: 95  LAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP 154
           L  L ++   +N+L  I  +    KL    ++ N+I     L+N+T  L  L +  N++ 
Sbjct: 67  LNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLT-NLTGLTLFNNQIT 125

Query: 155 KMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQ 214
            ++ +++  +L  LE  SN +  +  L  LT+LQ+L  G     +  L  L  ++++ + 
Sbjct: 126 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 185

Query: 215 SNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRL 274
           SN+++ +    +   LE L  ++N IS +  L  L NL  L ++ N+L  +  + +L+ L
Sbjct: 186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNL 245

Query: 275 EDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
            DL L +NQI +L  +          LT + L  N
Sbjct: 246 TDLDLANNQISNLAPL-----SGLTKLTELKLGAN 275

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  123 bits (312), Expect = 3e-32
 Identities = 55/267 (20%), Positives = 117/267 (43%), Gaps = 32/267 (11%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             LD++S ++ D+  +   TNL  L  T N+++ +   +  L+NL +LSL  N + D  I
Sbjct: 180 ERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKD--I 236

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             ++    L  L +L L +N++  +  +S   KL+   +  N+I++   L+ +T  L  L
Sbjct: 237 GTLAS---LTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLT-ALTNL 292

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL 205
            +++N++  +  I +  +L  L    N +  +  + +LT LQ L+   N++  V +L  L
Sbjct: 293 ELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANL 352

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM---------------------- 243
             I  +S   N+++ +        + +L L+    +                        
Sbjct: 353 TNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALI 412

Query: 244 --EGLSTLVNLHVLDVSSNKLTLVDDI 268
               +S   +    D++ N  +  +++
Sbjct: 413 APATISDGGSYTEPDITWNLPSYTNEV 439

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  171 bits (435), Expect = 6e-49
 Identities = 49/215 (22%), Positives = 106/215 (49%), Gaps = 7/215 (3%)

Query: 98  LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME 157
           + E I     + +I     F +    ++    +T +   + +  ++ ++  + +++  ++
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELN-SIDQIIANNSDIKSVQ 59

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSN 216
            I++  ++  L    N+L  ++ L NL NL  L+L  N+I  + +L  LK +K +SL+ N
Sbjct: 60  GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHN 119

Query: 217 RLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
            ++ + G      LE LYL +N I+ +  LS L  L  L +  N+++ +  +  L++L++
Sbjct: 120 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQN 179

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311
           L+L+ N I  L ++        + L  + L +  C
Sbjct: 180 LYLSKNHISDLRAL-----AGLKNLDVLELFSQEC 209

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  167 bits (425), Expect = 1e-47
 Identities = 49/246 (19%), Positives = 111/246 (45%), Gaps = 10/246 (4%)

Query: 48  LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
           + E    +  +  +       +   K +L++  + D         + L  ++++I  ++ 
Sbjct: 1   MGETITVSTPIKQI-FPDDAFAETIKDNLKKKSVTD-----AVTQNELNSIDQIIANNSD 54

Query: 108 LMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQI 167
           +  +  +     ++   ++ N++T    L+N+ + L  L++ +N++  +  ++    L+ 
Sbjct: 55  IKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKN-LGWLFLDENKIKDLSSLKDLKKLKS 113

Query: 168 LEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEE 226
           L    N +  +  L +L  L+ L+LG N+I  +  L  L  +  +SL+ N+++ +     
Sbjct: 114 LSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAG 173

Query: 227 CIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQI 284
              L+ LYLS N IS +  L+ L NL VL++ S +     ++   NL     +   D  +
Sbjct: 174 LTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

Query: 285 ESLESI 290
            + E I
Sbjct: 234 VTPEII 239

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  114 bits (285), Expect = 3e-28
 Identities = 48/269 (17%), Positives = 96/269 (35%), Gaps = 10/269 (3%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             +   +  +  +  +++  N+T+L L  N+LT +   +++L NL  L L +N I D  +
Sbjct: 46  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI-KPLTNLKNLGWLFLDENKIKD--L 102

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +     L  L+ L L  N +  I  +    +L    +  N+IT    LS +T  L  L
Sbjct: 103 SSLK---DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK-LDTL 158

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI---KVVNLC 203
            +  N++  +  +     LQ L    N +  +  L  L NL  L L         + +  
Sbjct: 159 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKPINHQS 218

Query: 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263
            L     +      L + +   +    E+  +  +       +S +    V    +    
Sbjct: 219 NLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARF 278

Query: 264 LVDDIQNLSRLEDLWLNDNQIESLESIVE 292
                Q L  +  +  + +       +  
Sbjct: 279 HGRVTQPLKEVYTVSYDVDGTVIKTKVEA 307

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  159 bits (404), Expect = 6e-47
 Identities = 48/213 (22%), Positives = 105/213 (49%), Gaps = 7/213 (3%)

Query: 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI 159
           E I     + +I     F +    ++    +T +   + +  ++ ++  + +++  ++ I
Sbjct: 6   ETITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELN-SIDQIIANNSDIKSVQGI 64

Query: 160 EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSNRL 218
           ++  ++  L    N+L  ++ L NL NL  L+L  N++  + +L  LK +K +SL+ N +
Sbjct: 65  QYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI 124

Query: 219 TSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLW 278
           + + G      LE LYL +N I+ +  LS L  L  L +  N+++ +  +  L++L++L+
Sbjct: 125 SDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLY 184

Query: 279 LNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311
           L+ N I  L ++        + L  + L +  C
Sbjct: 185 LSKNHISDLRALAGL-----KNLDVLELFSQEC 212

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score =  155 bits (393), Expect = 3e-45
 Identities = 49/229 (21%), Positives = 105/229 (45%), Gaps = 9/229 (3%)

Query: 65  ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFD 124
               +   K +L++  + D         + L  ++++I  ++ +  +  +     ++   
Sbjct: 20  DDAFAETIKDNLKKKSVTD-----AVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLF 74

Query: 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL 184
           ++ N++T    L+N+   L  L++ +N+V  +  ++    L+ L    N +  +  L +L
Sbjct: 75  LNGNKLTDIKPLANLK-NLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 185 TNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM 243
             L+ L+LG N+I  +  L  L  +  +SL+ N+++ +        L+ LYLS N IS +
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDL 193

Query: 244 EGLSTLVNLHVLDVSSNKLTL--VDDIQNLSRLEDLWLNDNQIESLESI 290
             L+ L NL VL++ S +     ++   NL     +   D  + + E I
Sbjct: 194 RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  153 bits (389), Expect = 1e-44
 Identities = 44/235 (18%), Positives = 97/235 (41%), Gaps = 7/235 (2%)

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
           ++    AI  I    ALA   ++    + +      +    ++        +T+  G+  
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQY 61

Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK 198
           +   L  L +  N++  +  +++   +  LE   N L+ +  +  L +++ L L   +I 
Sbjct: 62  LN-NLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 199 -VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV 257
            V  L GL  ++ + L  N++T++        L+ L + +  +S +  L+ L  L  L  
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 258 SSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK 312
             NK++ +  + +L  L ++ L +NQI  +  +      +   L  + L N    
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSPL-----ANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  153 bits (389), Expect = 2e-44
 Identities = 52/228 (22%), Positives = 101/228 (44%), Gaps = 7/228 (3%)

Query: 65  ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFD 124
              L+N  K++  ++ + D      +    L G+  L      +  I  V     L   +
Sbjct: 15  DPALANAIKIAAGKSNVTD--TVTQAD---LDGITTLSAFGTGVTTIEGVQYLNNLIGLE 69

Query: 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL 184
           +  N+IT    L N+T  + EL +S N +  +  I     ++ L+  S ++  +  L  L
Sbjct: 70  LKDNQITDLAPLKNLTK-ITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 185 TNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM 243
           +NLQ L+L  N+I  +  L GL  ++ +S+ + +++ +        L  L    N IS +
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 244 EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIV 291
             L++L NL  + + +N+++ V  + N S L  + L +  I +     
Sbjct: 189 SPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFY 236

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  151 bits (383), Expect = 1e-43
 Identities = 44/255 (17%), Positives = 108/255 (42%), Gaps = 8/255 (3%)

Query: 35  QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDA 94
            ++ +       N  ++    + +T   +  + L  +  LS     +    IE +     
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTDTVT-QADLDGITTLSAFGTGVTT--IEGVQ---Y 61

Query: 95  LAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP 154
           L  L  L L+DN++  +  +    K++  ++S N + +   ++ +  ++K L ++  ++ 
Sbjct: 62  LNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQ-SIKTLDLTSTQIT 120

Query: 155 KMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGLKCIKKISL 213
            +  +    +LQ+L    N++  +  L  LTNLQ L +G  ++  +  L  L  +  +  
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 214 QSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSR 273
             N+++ +        L E++L +N IS +  L+   NL ++ +++  +T      N + 
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQPVFYNNNL 240

Query: 274 LEDLWLNDNQIESLE 288
           +    +       + 
Sbjct: 241 VVPNVVKGPSGAPIA 255

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  103 bits (260), Expect = 7e-26
 Identities = 40/172 (23%), Positives = 81/172 (47%), Gaps = 7/172 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             L+L   Q+ DL  ++  T +TEL+L+ N L ++ + I+ L ++K L L    I D  +
Sbjct: 66  IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITD--V 122

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
            P++    L+ L+ L L  N++  I  ++    L    +   +++    L+N++  L  L
Sbjct: 123 TPLA---GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLS-KLTTL 178

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK 198
               N++  +  +    +L  +   +N++  +  L N +NL  + L    I 
Sbjct: 179 KADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTIT 230

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  135 bits (342), Expect = 4e-38
 Identities = 37/189 (19%), Positives = 80/189 (42%), Gaps = 1/189 (0%)

Query: 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI 159
           E I R   + ++            ++    +T       ++  ++      + +  +  +
Sbjct: 1   ESIQRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELS-GVQNFNGDNSNIQSLAGM 59

Query: 160 EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLT 219
           + F +L+ L    N++  +  L++LT L+EL + RNR+K +N     C+ ++ L +N L 
Sbjct: 60  QFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELR 119

Query: 220 SMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWL 279
                     LE L + +N +  +  L  L  L VLD+  N++T    +  L ++  + L
Sbjct: 120 DTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDL 179

Query: 280 NDNQIESLE 288
              +  +  
Sbjct: 180 TGQKCVNEP 188

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score =  127 bits (320), Expect = 6e-35
 Identities = 45/208 (21%), Positives = 90/208 (43%), Gaps = 12/208 (5%)

Query: 76  LRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG 135
            R   I+   + P      LA   +  L    +  +        +  F+   + I S  G
Sbjct: 4   QRPTPINQ--VFPDP---GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG 58

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
           +   T  LKEL++S N++  +  ++    L+ L    NRL+ +  + +   L  L+L  N
Sbjct: 59  MQFFT-NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSA-CLSRLFLDNN 116

Query: 196 RI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHV 254
            +    +L  LK ++ +S+++N+L S+        LE L L  N I+   GL+ L  ++ 
Sbjct: 117 ELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNW 176

Query: 255 LDVSSNKLTLVDDIQNLSRLEDLWLNDN 282
           +D++  K       + +    +L++ + 
Sbjct: 177 IDLTGQKCVN----EPVKYQPELYITNT 200

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 98.2 bits (245), Expect = 4e-24
 Identities = 41/224 (18%), Positives = 82/224 (36%), Gaps = 11/224 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
              +L    + DL S +  + +   +   + + SL   +   +NLK+L L  N I D  +
Sbjct: 22  VKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAG-MQFFTNLKELHLSHNQISD--L 78

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
            P+     L  LEEL +  N+L  +  +     LS   +  NE+  +  L ++   L+ L
Sbjct: 79  SPLKD---LTKLEELSVNRNRLKNLNGIP-SACLSRLFLDNNELRDTDSLIHLK-NLEIL 133

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK---VVNLC 203
            +  N++  +  +     L++L+   N +     L  L  +  + L   +     V    
Sbjct: 134 SIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVKYQP 193

Query: 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS 247
            L     +     R  S        +  +  +        + +S
Sbjct: 194 ELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVS 237

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  133 bits (336), Expect = 1e-36
 Identities = 50/269 (18%), Positives = 98/269 (36%), Gaps = 34/269 (12%)

Query: 46  TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
                  +T + L    + +     N+K+L L  N +   +   ++       LE L L 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP---FTKLELLNLS 66

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
            N L +  D+     L   D++ N +       +    ++ L+ + N + ++        
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNISRVSC-SRGQG 121

Query: 165 LQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK 222
            + +   +N++ ++ +      + +Q L L  N I  VN   L                 
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----------------- 164

Query: 223 GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDD-IQNLSRLEDLWLND 281
                  LE L L +N I  ++G      L  LD+SSNKL  +    Q+ + +  + L +
Sbjct: 165 -AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223

Query: 282 NQIESLESIVEAVAGSRETLTTIYLENNP 310
           N++  +E  +       + L    L  N 
Sbjct: 224 NKLVLIEKAL----RFSQNLEHFDLRGNG 248

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  102 bits (256), Expect = 3e-25
 Identities = 46/269 (17%), Positives = 89/269 (33%), Gaps = 38/269 (14%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
            +L+L+S  L++   +E  + L  LDL  N +      +    +++ L    N I    +
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISR--V 114

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTDTLK 144
                     G + + L +NK+  + D+      ++   D+  NEI +            
Sbjct: 115 SC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------------ 158

Query: 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NL 202
                   V   E       L+ L    N +  ++       L+ L L  N++  +    
Sbjct: 159 --------VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF 210

Query: 203 CGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGIS---KMEGLSTLVNLHVLDVS 258
                +  ISL++N+L  + K       LE   L  NG       +  S    +  +   
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 259 SNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
           + K     + +  +            E L
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 29/133 (21%), Positives = 55/133 (41%), Gaps = 29/133 (21%)

Query: 179 ENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238
           E  QN    +   +  + +K                ++        +    ++EL LS N
Sbjct: 4   EIKQNGNRYKIEKVTDSSLK-------------QALAS------LRQSAWNVKELDLSGN 44

Query: 239 GISKMEG--LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAG 296
            +S++    L+    L +L++SSN L    D+++LS L  L LN+N ++ L         
Sbjct: 45  PLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG------ 98

Query: 297 SRETLTTIYLENN 309
              ++ T++  NN
Sbjct: 99  --PSIETLHAANN 109

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  133 bits (336), Expect = 4e-36
 Identities = 63/302 (20%), Positives = 117/302 (38%), Gaps = 25/302 (8%)

Query: 21  EIDLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSL 76
           +I L+N  ++   +  +  L +        +  L+L   ++  +D+   ++   ++KL +
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 100

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITS- 132
             N I    + P   +  +  L  L+L  N L  +P   IF          +S N +   
Sbjct: 101 GFNAI--RYLPP-HVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERI 156

Query: 133 -SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELW 191
                   T  L+ L +S N +  ++ +     L       N L     L     ++EL 
Sbjct: 157 EDDTFQATTS-LQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL---STLAIPIAVEELD 211

Query: 192 LGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTL 249
              N I VV       +  + LQ N LT          L E+ LS+N + K+       +
Sbjct: 212 ASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 271

Query: 250 VNLHVLDVSSNKLTLVD-DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN 308
             L  L +S+N+L  ++   Q +  L+ L L+ N +  +E          + L  +YL++
Sbjct: 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVER----NQPQFDRLENLYLDH 327

Query: 309 NP 310
           N 
Sbjct: 328 NS 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  131 bits (332), Expect = 2e-35
 Identities = 61/267 (22%), Positives = 111/267 (41%), Gaps = 18/267 (6%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             L +    +  L    F     LT L L  N L+SL   I  +   L  LS+  N ++ 
Sbjct: 96  QKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             IE  + + A   L+ L L  N+L  +   S+   L   +VS+N +++          +
Sbjct: 156 --IEDDT-FQATTSLQNLQLSSNRLTHVDL-SLIPSLFHANVSYNLLSTLAIPIA----V 207

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN-- 201
           +EL  S N +  +       +L IL+   N L     L N   L E+ L  N ++ +   
Sbjct: 208 EELDASHNSINVVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYH 266

Query: 202 -LCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVS 258
               ++ ++++ + +NRL ++    +    L+ L LSHN +  +E        L  L + 
Sbjct: 267 PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLD 326

Query: 259 SNKLTLVDDIQNLSRLEDLWLNDNQIE 285
            N +  +  +     L++L L+ N  +
Sbjct: 327 HNSIVTLK-LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (302), Expect = 3e-31
 Identities = 58/308 (18%), Positives = 124/308 (40%), Gaps = 36/308 (11%)

Query: 7   KQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI- 65
           +QP  +  + +   +    +  +D+ +  ++         N   +    + +  L + + 
Sbjct: 6   RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 65

Query: 66  SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV 125
                ++ L+L    I++  I+  + +     +++L +  N +  +P   +F+ +     
Sbjct: 66  DSFRQVELLNLNDLQIEE--IDTYA-FAYAHTIQKLYMGFNAIRYLPP-HVFQNVP---- 117

Query: 126 SFNEITSSHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--L 181
                            L  L + +N++  +      +   L  L   +N L  +E+   
Sbjct: 118 ----------------LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTF 161

Query: 182 QNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS 241
           Q  T+LQ L L  NR+  V+L  +  +   ++  N L++       IA+EEL  SHN I+
Sbjct: 162 QATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLST---LAIPIAVEELDASHNSIN 218

Query: 242 KMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL 301
            + G    V L +L +  N LT    + N   L ++ L+ N++E +          +  L
Sbjct: 219 VVRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMY--HPFVKMQR-L 274

Query: 302 TTIYLENN 309
             +Y+ NN
Sbjct: 275 ERLYISNN 282

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 49.7 bits (119), Expect = 6e-07
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 7/105 (6%)

Query: 27  TVLDLTSFQLHDLDSVEFP-TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAA 85
             L +++ +L  L+    P   L  LDL+ N L  ++        L+ L L  N I    
Sbjct: 275 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 334

Query: 86  IEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEI 130
           +           L+ L L  N        ++F+ ++   V   + 
Sbjct: 335 L------STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQ 373

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  127 bits (322), Expect = 1e-33
 Identities = 67/288 (23%), Positives = 117/288 (40%), Gaps = 33/288 (11%)

Query: 44  FPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102
            PT    LDL  NR+ +L+    +   +L++L L +N++    +EP + ++ L  L  L 
Sbjct: 30  IPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA--VEPGA-FNNLFNLRTLG 86

Query: 103 LRDNKLMKIPDVSIFKKLS---VFDVSFNEITS-----SHGLSNVTDTLKELYVSKNEVP 154
           LR N+L  IP   +F  LS     D+S N+I          L N    LK L V  N++ 
Sbjct: 87  LRSNRLKLIPL-GVFTGLSNLTKLDISENKIVILLDYMFQDLYN----LKSLEVGDNDLV 141

Query: 155 KMEE--IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN---LCGLKC 207
            +        + L+ L      L  +    L +L  L  L L    I  +       L  
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYR 201

Query: 208 IKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLT 263
           +K + +                + L  L ++H  ++ +    +  LV L  L++S N ++
Sbjct: 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS 261

Query: 264 LVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
            ++   +  L RL+++ L   Q+  +E    A  G    L  + +  N
Sbjct: 262 TIEGSMLHELLRLQEIQLVGGQLAVVEP--YAFRGLNY-LRVLNVSGN 306

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  126 bits (318), Expect = 5e-33
 Identities = 74/304 (24%), Positives = 143/304 (47%), Gaps = 27/304 (8%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
            +LDL   ++  L+  EF    +L EL+L  N +++++    ++L NL+ L LR N +  
Sbjct: 35  RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITS-SHGLSNV 139
               P+  +  L+ L +L + +NK++ + D  +F+ L      +V  N++   SH   + 
Sbjct: 95  I---PLGVFTGLSNLTKLDISENKIVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 140 TDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRN 195
            ++L++L + K  +  +    + H H L +L      +  + +   + L  L+ L +   
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHW 210

Query: 196 RIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG--LST 248
                   N      +  +S+    LT++        + L  L LS+N IS +EG  L  
Sbjct: 211 PYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE 270

Query: 249 LVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYL 306
           L+ L  + +   +L +V+    + L+ L  L ++ NQ+ +LE   E+V  S   L T+ L
Sbjct: 271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLIL 327

Query: 307 ENNP 310
           ++NP
Sbjct: 328 DSNP 331

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (274), Expect = 7e-27
 Identities = 63/262 (24%), Positives = 102/262 (38%), Gaps = 29/262 (11%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
           +L N   L L S +L  +    F   +NLT+LD++ N++  L   +   L NLK L +  
Sbjct: 78  NLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGD 137

Query: 79  NLIDDAAIEPISRWDALAG---LEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITS- 132
           N +    I       A +G   LE+L L    L  IP  ++     L V  +    I + 
Sbjct: 138 NDL--VYISH----RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 133 -SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD--LQILEFGSNRLRVMEN--LQNLTNL 187
             +    +   LK L +S             +   L  L      L  +    +++L  L
Sbjct: 192 RDYSFKRLYR-LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 188 QELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTS--MKGFEECIALEELYLSHNGISK 242
           + L L  N I  +    L  L  +++I L   +L       F     L  L +S N ++ 
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT 310

Query: 243 MEG--LSTLVNLHVLDVSSNKL 262
           +E     ++ NL  L + SN L
Sbjct: 311 LEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 232 ELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLE 288
            +         + EG+ T     +LD+  N++  +  D+  +   LE+L LN+N + ++E
Sbjct: 15  AVLCHRKRFVAVPEGIPT--ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE 72

Query: 289 SIVEAVAGSRETLTTIYLENN 309
               A       L T+ L +N
Sbjct: 73  P--GAFNNLFN-LRTLGLRSN 90

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  125 bits (316), Expect = 8e-33
 Identities = 61/308 (19%), Positives = 115/308 (37%), Gaps = 33/308 (10%)

Query: 21  EIDLSN----TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSL 76
            I        T LD  +  + D+  +E  T LT+L  T+N +T+LD  +S  +NL  L+ 
Sbjct: 35  TISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLAC 92

Query: 77  RQNLIDDAAIEPISR---------------WDALAGLEELILRDNKLMKIPDVSIFKKLS 121
             N + +  + P+++                     L  L    N L +I DVS   +L+
Sbjct: 93  DSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI-DVSHNTQLT 151

Query: 122 VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL 181
             D   N+  +   ++  T  L  L  S N++ ++ ++     L  L   +N +  + +L
Sbjct: 152 ELDCHLNKKITKLDVTPQTQ-LTTLDCSFNKITEL-DVSQNKLLNRLNCDTNNITKL-DL 208

Query: 182 QNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS 241
                L  L    N++  +++  L  +       N LT +        L  L+     + 
Sbjct: 209 NQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLL 267

Query: 242 KMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL 301
           +++ L+    L        +     D+ + ++L  L      I  L+            L
Sbjct: 268 EID-LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD------LSQNPKL 320

Query: 302 TTIYLENN 309
             +YL N 
Sbjct: 321 VYLYLNNT 328

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  120 bits (303), Expect = 6e-31
 Identities = 58/262 (22%), Positives = 111/262 (42%), Gaps = 16/262 (6%)

Query: 29  LDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
               +F++   D++       LT LD   + +T +   I  L+ L KL    N I     
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNNITTL-- 79

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +S+      L  L    NKL  +  V+   KL+  +   N++T      N    L  L
Sbjct: 80  -DLSQ---NTNLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKLDVSQN--PLLTYL 132

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLK 206
             ++N + ++ ++ H   L  L+   N+     ++   T L  L    N+I  +++   K
Sbjct: 133 NCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNK 191

Query: 207 CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVD 266
            + +++  +N +T +    + I L  L  S N +++++ ++ L  L   D S N LT + 
Sbjct: 192 LLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTEL- 248

Query: 267 DIQNLSRLEDLWLNDNQIESLE 288
           D+  LS+L  L      +  ++
Sbjct: 249 DVSTLSKLTTLHCIQTDLLEID 270

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  102 bits (255), Expect = 2e-24
 Identities = 42/242 (17%), Positives = 88/242 (36%), Gaps = 15/242 (6%)

Query: 69  SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFN 128
            N          +         +   LA L  L   ++ +  +  +     L+    + N
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQ---LATLTSLDCHNSSITDMTGIEKLTGLTKLICTSN 74

Query: 129 EITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQ 188
            IT+   LS  T  L  L    N++  ++ +     L  L   +N+L  + ++     L 
Sbjct: 75  NITTLD-LSQNT-NLTYLACDSNKLTNLD-VTPLTKLTYLNCDTNKLTKL-DVSQNPLLT 130

Query: 189 ELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLST 248
            L   RN +  +++     + ++    N+  +         L  L  S N I++++ +S 
Sbjct: 131 YLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-VSQ 189

Query: 249 LVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN 308
              L+ L+  +N +T + D+    +L  L  + N++  ++            LT      
Sbjct: 190 NKLLNRLNCDTNNITKL-DLNQNIQLTFLDCSSNKLTEID------VTPLTQLTYFDCSV 242

Query: 309 NP 310
           NP
Sbjct: 243 NP 244

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.3 bits (240), Expect = 2e-22
 Identities = 45/273 (16%), Positives = 90/273 (32%), Gaps = 20/273 (7%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T LD +  ++ +LD V     L  L+   N +T LD  ++    L  L    N + +  +
Sbjct: 173 TTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEIDV 229

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
            P      L  L       N L ++  VS   KL+       ++       N    L   
Sbjct: 230 TP------LTQLTYFDCSVNPLTELD-VSTLSKLTTLHCIQTDLLEIDLTHNTQ--LIYF 280

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLK 206
                   K  ++ H   L +L+  +  +  + +L     L  L+L    +  +++    
Sbjct: 281 QAEGCRKIKELDVTHNTQLYLLDCQAAGITEL-DLSQNPKLVYLYLNNTELTELDVSHNT 339

Query: 207 CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKME-------GLSTLVNLHVLDVSS 259
            +K +S  +  +       +  AL   + +      M         L+  V+  +LD   
Sbjct: 340 KLKSLSCVNAHIQDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

Query: 260 NKLTLVDDIQNLSRLEDLWLNDNQIESLESIVE 292
           N + +      +       +    + +    V 
Sbjct: 400 NPMNIEPGDGGVYDQATNTITWENLSTDNPAVT 432

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  123 bits (310), Expect = 9e-33
 Identities = 66/308 (21%), Positives = 123/308 (39%), Gaps = 45/308 (14%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
              V+  +   L  +   + P +   LDL  N++T +      +L NL  L L  N I  
Sbjct: 32  HLRVVQCSDLGLEKV-PKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKI-- 88

Query: 84  AAIEPISRWDALAG---LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
           + I P     A A    LE L L  N+L ++P+  + K L    V  NEIT         
Sbjct: 89  SKISP----GAFAPLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRK----- 138

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME----NLQNLTNLQELWLGRNR 196
                L                + + ++E G+N L+         Q +  L  + +    
Sbjct: 139 SVFNGL----------------NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182

Query: 197 IKVVNLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKMEG--LSTLVNL 252
           I  +       + ++ L  N++T +     +    L +L LS N IS ++   L+   +L
Sbjct: 183 ITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242

Query: 253 HVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET---LTTIYLEN 308
             L +++NKL  V   + +   ++ ++L++N I ++ S      G        + + L +
Sbjct: 243 RELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

Query: 309 NPCKIFKL 316
           NP + +++
Sbjct: 303 NPVQYWEI 310

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  117 bits (294), Expect = 1e-30
 Identities = 53/287 (18%), Positives = 117/287 (40%), Gaps = 43/287 (14%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
            +LDL + ++ ++   +F    NL  L L  N+++ +     + L  L++L L +N +  
Sbjct: 55  ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK- 113

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSSH------ 134
             +           L+EL + +N++ K+   S+F  L+   V ++  N + SS       
Sbjct: 114 -ELPE----KMPKTLQELRVHENEITKVRK-SVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 135 -GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELW 191
            G+      L  + ++   +  + +      L  L    N++  ++   L+ L NL +L 
Sbjct: 168 QGMKK----LSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 222

Query: 192 LGRNRIKVVN---LCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKMEG-- 245
           L  N I  V+   L     ++++ L +N+L  +  G  +   ++ +YL +N IS +    
Sbjct: 223 LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSND 282

Query: 246 ------LSTLVNLHVLDVSSNKLTLV----DDIQNLSRLEDLWLNDN 282
                  +   +   + + SN +          + +     + L + 
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  104 bits (262), Expect = 5e-26
 Identities = 48/252 (19%), Positives = 93/252 (36%), Gaps = 41/252 (16%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAA 85
             L L+  QL +L   + P  L EL +  N +T +   + + L+ +  + L  N +  + 
Sbjct: 103 ERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG 161

Query: 86  IEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKE 145
           IE  + +  +  L  + + D  +  IP   +   L+   +  N+IT          +LK 
Sbjct: 162 IENGA-FQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITKVD-----AASLKG 214

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVV--N 201
           L                  L  L    N +  ++N  L N  +L+EL L  N++  V   
Sbjct: 215 LNN----------------LAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGG 258

Query: 202 LCGLKCIKKISLQSNRLTS--------MKGFEECIALEELYLSHNGISKME----GLSTL 249
           L   K I+ + L +N +++             +  +   + L  N +   E        +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 250 VNLHVLDVSSNK 261
                + + + K
Sbjct: 319 YVRAAVQLGNYK 330

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  126 bits (319), Expect = 1e-32
 Identities = 67/307 (21%), Positives = 113/307 (36%), Gaps = 29/307 (9%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
           D++     LT       D V+F    N++ + L    +  L+  +      + LS+ +  
Sbjct: 260 DVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQ 318

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV- 139
           +       +     L  L+ L L  NK            LS  D+S N ++ S   S   
Sbjct: 319 LKQ--FPTLD----LPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSD 372

Query: 140 --TDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVMEN---LQNLTNLQELWLG 193
             T++L+ L +S N    M        +LQ L+F  + L+ +       +L  L  L + 
Sbjct: 373 LGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 194 RNRIKVVN---LCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKMEG-- 245
               K+       GL  +  + +  N          F     L  L LS   + ++    
Sbjct: 433 YTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV 492

Query: 246 LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303
             TL  L +L++S N L  +D      L  L  L  + N+IE+ + I++    S   L  
Sbjct: 493 FDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS---LAF 549

Query: 304 IYLENNP 310
             L NN 
Sbjct: 550 FNLTNNS 556

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (280), Expect = 2e-27
 Identities = 50/294 (17%), Positives = 107/294 (36%), Gaps = 26/294 (8%)

Query: 27  TVLDLTSFQLHDLDSVEF------PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
             +DL+   +  +   +       P     LD++ N +  +  +      L +L+LR N 
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNF 215

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
                ++   +   LAGL    L   +     ++ IF+  S+ +          GL +VT
Sbjct: 216 NSSNIMKTCLQ--NLAGLHVHRLILGEFKDERNLEIFE-PSIME----------GLCDVT 262

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV 200
                L  + +    + +     ++  +      ++ +E++      Q L + R ++K  
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS----TLVNLHVLD 256
               L  +K ++L  N+ +         +L  L LS N +S     S       +L  LD
Sbjct: 323 PTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLD 382

Query: 257 VSSNKLTLVD-DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
           +S N   ++  +   L  L+ L    + ++ +     A     + L  + +   
Sbjct: 383 LSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEF-SAFLSLEK-LLYLDISYT 434

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  100 bits (250), Expect = 1e-23
 Identities = 48/279 (17%), Positives = 97/279 (34%), Gaps = 46/279 (16%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISH---LSNLKKLSLRQ 78
           DL     L LT  +           +L+ LDL+ N L+            ++L+ L L  
Sbjct: 326 DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSF 385

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSHG 135
           N      I   + +  L  L+ L  + + L ++ + S F   +KL   D+S+        
Sbjct: 386 NGA----IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD 441

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM---ENLQNLTNLQELWL 192
                                        L  L+   N  +         N TNL  L L
Sbjct: 442 ---------------------GIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDL 480

Query: 193 GRNRIKVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG-- 245
            + +++ ++      L  ++ +++  N L  +    + +  +L  L  S N I   +G  
Sbjct: 481 SKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGIL 540

Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQI 284
                +L   ++++N +  + + Q   +    W+ + + 
Sbjct: 541 QHFPKSLAFFNLTNNSVACICEHQKFLQ----WVKEQKQ 575

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 56/304 (18%), Positives = 100/304 (32%), Gaps = 64/304 (21%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLI 81
            + N        +L  +   + P++   +DL+ N L  L S   S+ S L+ L L +  I
Sbjct: 10  VVPNITYQCMDQKLSKVPD-DIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEI 68

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
           +   IE  + W  L  L  LIL  N +      S                   GL++   
Sbjct: 69  ET--IEDKA-WHGLHHLSNLILTGNPIQSFSPGSF-----------------SGLTS--- 105

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKV 199
                                  L+ L     +L  +E+  +  L  L++L +  N I  
Sbjct: 106 -----------------------LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS 142

Query: 200 VNL----CGLKCIKKISLQSNRLTSMKG------FEECIALEELYLSHNGISKME-GLST 248
             L      L  +  + L  N + ++         E       L +S N I  ++     
Sbjct: 143 CKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQ 202

Query: 249 LVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305
            + LH L +  N  +       +QNL+ L    L   + +   ++        E L  + 
Sbjct: 203 GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVT 262

Query: 306 LENN 309
           ++  
Sbjct: 263 IDEF 266

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  127 bits (320), Expect = 1e-32
 Identities = 79/327 (24%), Positives = 126/327 (38%), Gaps = 43/327 (13%)

Query: 21  EIDLSN--TVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSRI-SHLSNLKKLS 75
            ++L    T   ++   L  +D   F     L  L++  N +  + S + + L NLK LS
Sbjct: 300 YLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLS 359

Query: 76  LRQNLIDDAAIEPISRWD-ALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITS 132
           L  +      +   +    A + L  L L  NK+ KI   +      L V D+  NEI  
Sbjct: 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 133 S------HGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN---- 180
                   GL N    + E+Y+S N+  ++          LQ L      L+ +++    
Sbjct: 420 ELTGQEWRGLEN----IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 181 LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSM----------KGFEEC 227
            Q L NL  L L  N I  +N   L GL+ ++ + LQ N L  +             +  
Sbjct: 476 FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGL 535

Query: 228 IALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQ 283
             L  L L  NG  ++  E    L  L ++D+  N L  +      N   L+ L L  N 
Sbjct: 536 SHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNL 595

Query: 284 IESLESIVEAVAGSRETLTTIYLENNP 310
           I S+    +    +   LT + +  NP
Sbjct: 596 ITSV--EKKVFGPAFRNLTELDMRFNP 620

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (294), Expect = 3e-29
 Identities = 69/323 (21%), Positives = 132/323 (40%), Gaps = 43/323 (13%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLID- 82
           T+LDL+   L+ + +  F     L    L  N +  L S  +  L N++ L+L+++    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 83  DAAIEPISRWDA-----LAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEIT---- 131
             ++  + + D      L  LE L + DN +  I          L    +S +  +    
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 132 SSHGLSNVTDT-LKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVM---ENLQNLT 185
           ++    ++  + L  L ++KN++ K+E         L++L+ G N +      +  + L 
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLE 430

Query: 186 NLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSM----KGFEECIALEELYLSHN 238
           N+ E++L  N+   +       +  ++++ L+   L ++      F+    L  L LS+N
Sbjct: 431 NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490

Query: 239 GISKM--EGLSTLVNLHVLDVSSNKLTLVDD----------IQNLSRLEDLWLNDNQIES 286
            I+ +  + L  L  L +LD+  N L  +            ++ LS L  L L  N  + 
Sbjct: 491 NIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 287 LESIVEAVAGSRETLTTIYLENN 309
           +   VE      E L  I L  N
Sbjct: 551 I--PVEVFKDLFE-LKIIDLGLN 570

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  116 bits (292), Expect = 6e-29
 Identities = 54/301 (17%), Positives = 119/301 (39%), Gaps = 39/301 (12%)

Query: 27  TVLDLTSFQLHDLDSVEF----PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLI 81
             L L++ ++  L S E      ++L +L+L++N++          +  L  L L    +
Sbjct: 148 QELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQL 207

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI----FKKLSVFDVSFNEITS--SHG 135
             +  E +    A   +  L L +++L    + +     +  L++ D+S+N +    +  
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS 267

Query: 136 LSNVTDTLKELYVSKNEV-----------PKMEEIEHFHDLQILEFGSNRLRVMEN--LQ 182
            + +   L+  ++  N +             +  +               L  +++   Q
Sbjct: 268 FAWLP-QLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326

Query: 183 NLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLT----SMKGFEECI--ALEEL 233
            L  L+ L +  N I  +      GL  +K +SL ++  +    + + F       L  L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386

Query: 234 YLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLE 288
            L+ N ISK+  +  S L +L VLD+  N++       + + L  + +++L+ N+   L 
Sbjct: 387 NLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLT 446

Query: 289 S 289
            
Sbjct: 447 R 447

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (258), Expect = 1e-24
 Identities = 48/283 (16%), Positives = 103/283 (36%), Gaps = 47/283 (16%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
            +    D +  +LT +   +   +N+  L+L  N +        +R    + L  L +  
Sbjct: 4   VSHEVADCSHLKLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTR---YSQLTSLDVGF 58

Query: 106 NKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFH 163
           N + K+          L V ++  NE++                         +      
Sbjct: 59  NTISKLEPELCQKLPMLKVLNLQHNELSQLS---------------------DKTFAFCT 97

Query: 164 DLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRL 218
           +L  L   SN ++ ++N       NL  L L  N +          L+ ++++ L +N++
Sbjct: 98  NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKI 157

Query: 219 TSMK----GFEECIALEELYLSHNGISK--MEGLSTLVNLHVLDVSSNKLTLVDDI---- 268
            ++K          +L++L LS N I +        +  L  L +++ +L          
Sbjct: 158 QALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCL 217

Query: 269 -QNLSRLEDLWLNDNQIESLESIVEAVAGSRET-LTTIYLENN 309
               + + +L L+++Q+ +  +      G + T LT + L  N
Sbjct: 218 ELANTSIRNLSLSNSQLSTTSN--TTFLGLKWTNLTMLDLSYN 258

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (256), Expect = 3e-24
 Identities = 67/306 (21%), Positives = 121/306 (39%), Gaps = 49/306 (16%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
           S+ V D +  +L  +   + PTN+T L+LT N+L  L +   +  S L  L +  N I  
Sbjct: 5   SHEVADCSHLKLTQVPD-DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTD 141
             +EP      L  L+ L L+ N+L ++ D +      L+   +  N I           
Sbjct: 64  --LEPEL-CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN------ 114

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKV 199
                                 +L  L+   N L   +      L NLQEL L  N+I+ 
Sbjct: 115 ---------------NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159

Query: 200 V-----NLCGLKCIKKISLQSNRLTS--MKGFEECIALEELYLSHNGIS-----KMEGLS 247
           +     ++     +KK+ L SN++       F     L  L+L++  +      K+    
Sbjct: 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL 219

Query: 248 TLVNLHVLDVSSNKLTLVDD--IQNL--SRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303
              ++  L +S+++L+   +     L  + L  L L+ N +  + +  ++ A   + L  
Sbjct: 220 ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN--DSFAWLPQ-LEY 276

Query: 304 IYLENN 309
            +LE N
Sbjct: 277 FFLEYN 282

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  101 bits (254), Expect = 6e-24
 Identities = 55/288 (19%), Positives = 110/288 (38%), Gaps = 45/288 (15%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQN 79
            + LSN+   L +       S+   + L  L+LT N+++ ++S   S L +L+ L L  N
Sbjct: 357 YLSLSNSFTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLN 415

Query: 80  LIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLS 137
            I          W  L  + E+ L  NK +++   S      L    +    + +     
Sbjct: 416 EIGQEL--TGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP 473

Query: 138 NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRN 195
           +                     +   +L IL+  +N +  + +  L+ L  L+ L L  N
Sbjct: 474 SP-------------------FQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHN 514

Query: 196 RIKVV-----------NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK 242
            +  +            L GL  +  ++L+SN    +  + F++   L+ + L  N ++ 
Sbjct: 515 NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNT 574

Query: 243 MEG--LSTLVNLHVLDVSSNKLTLVDD---IQNLSRLEDLWLNDNQIE 285
           +     +  V+L  L++  N +T V+          L +L +  N  +
Sbjct: 575 LPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  121 bits (306), Expect = 2e-32
 Identities = 61/296 (20%), Positives = 107/296 (36%), Gaps = 54/296 (18%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
           S T +   S  L  + +   P++ T L+L +N+L SL   +   L+ L KLSL  N +  
Sbjct: 8   SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
                 S       L+ L L  N ++ +     F  L                      L
Sbjct: 67  KGCCSQS-DFGTTSLKYLDLSFNGVITMSSN--FLGLE--------------------QL 103

Query: 144 KELYVSKNEVPKMEEIEHFHD---LQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIK 198
           + L    + + +M E   F     L  L+      RV  N     L++L+ L +  N   
Sbjct: 104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF- 162

Query: 199 VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLD 256
                      + +   +       F E   L  L LS   + ++     ++L +L VL+
Sbjct: 163 -----------QENFLPD------IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 257 VSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           +S N    +D    + L+ L+ L  + N I + +   + +     +L  + L  N 
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKK--QELQHFPSSLAFLNLTQND 259

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.0 bits (229), Expect = 1e-21
 Identities = 51/272 (18%), Positives = 92/272 (33%), Gaps = 75/272 (27%)

Query: 21  EIDLSN---TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLR 77
           ++ LS+   +     S            T+L  LDL+ N + ++ S    L  L+ L  +
Sbjct: 56  KLSLSSNGLSFKGCCSQSDFGT------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQ 109

Query: 78  QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
            + +    +   S + +L  L  L +         +        +F+          GLS
Sbjct: 110 HSNLK--QMSEFSVFLSLRNLIYLDISHTHTRVAFN-------GIFN----------GLS 150

Query: 138 NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
           +    L+ L ++ N        E+F                +    L NL  L L + ++
Sbjct: 151 S----LEVLKMAGNSF-----QENFLP--------------DIFTELRNLTFLDLSQCQL 187

Query: 198 KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVL 255
           +              L      S+       +L+ L +SHN    ++      L +L VL
Sbjct: 188 E-------------QLSPTAFNSLS------SLQVLNMSHNNFFSLDTFPYKCLNSLQVL 228

Query: 256 DVSSNKLTLV--DDIQNL-SRLEDLWLNDNQI 284
           D S N +      ++Q+  S L  L L  N  
Sbjct: 229 DYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 61.6 bits (150), Expect = 5e-11
 Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 33/211 (15%)

Query: 27  TVLDLTSFQLHDLDSVEFP-TNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDD 83
             LDL+   +  + S       L  LD   + L  +        L NL  L +       
Sbjct: 81  KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT-- 138

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITS-SHGLSNV 139
                   ++ L+ LE L +  N   +     IF +L      D+S  ++   S    N 
Sbjct: 139 RVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 140 TDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQNL-TNLQEL---- 190
             +L+ L +S N    ++    +  + LQ+L++  N +   +   LQ+  ++L  L    
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 257

Query: 191 --------------WLGRNRIKVVNLCGLKC 207
                         W+   R  +V +  ++C
Sbjct: 258 NDFACTCEHQSFLQWIKDQRQLLVEVERMEC 288

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (316), Expect = 2e-32
 Identities = 65/301 (21%), Positives = 120/301 (39%), Gaps = 25/301 (8%)

Query: 21  EIDLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSL 76
           +I L+N  ++   +  +  L +        +  L+L   ++  +D+   ++   ++KL +
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYM 106

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITS- 132
             N I    + P   +  +  L  L+L  N L  +P   IF    KL+   +S N +   
Sbjct: 107 GFNAI--RYLPP-HVFQNVPLLTVLVLERNDLSSLPR-GIFHNTPKLTTLSMSNNNLERI 162

Query: 133 -SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELW 191
                   T  L+ L +S N +  ++ +     L       N L     L     ++EL 
Sbjct: 163 EDDTFQATTS-LQNLQLSSNRLTHVD-LSLIPSLFHANVSYNLL---STLAIPIAVEELD 217

Query: 192 LGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTL 249
              N I VV       +  + LQ N LT          L E+ LS+N + K+       +
Sbjct: 218 ASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM 277

Query: 250 VNLHVLDVSSNKLTLVD-DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN 308
             L  L +S+N+L  ++   Q +  L+ L L+ N +  +    E      + L  +YL++
Sbjct: 278 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHV----ERNQPQFDRLENLYLDH 333

Query: 309 N 309
           N
Sbjct: 334 N 334

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (284), Expect = 4e-28
 Identities = 56/312 (17%), Positives = 132/312 (42%), Gaps = 21/312 (6%)

Query: 7   KQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI- 65
           +QP  +  + +   +    +  +D+ +  ++         N   +    + +  L + + 
Sbjct: 12  RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALL 71

Query: 66  SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---V 122
                ++ L+L    I++  I+  + +     +++L +  N +  +P   +F+ +    V
Sbjct: 72  DSFRQVELLNLNDLQIEE--IDTYA-FAYAHTIQKLYMGFNAIRYLPP-HVFQNVPLLTV 127

Query: 123 FDVSFNEITS-SHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVME 179
             +  N+++S   G+ + T  L  L +S N + ++E+   +    LQ L+  SNRL  ++
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD 187

Query: 180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNG 239
            L  + +L    +  N +    L     ++++    N +  ++     + L  L L HN 
Sbjct: 188 -LSLIPSLFHANVSYNLLS--TLAIPIAVEELDASHNSINVVR-GPVNVELTILKLQHNN 243

Query: 240 ISKMEGLSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGS 297
           ++    L     L  +D+S N+L  +       + RLE L++++N++ +L          
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL----NLYGQP 299

Query: 298 RETLTTIYLENN 309
             TL  + L +N
Sbjct: 300 IPTLKVLDLSHN 311

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 4e-06
 Identities = 36/253 (14%), Positives = 81/253 (32%), Gaps = 23/253 (9%)

Query: 27  TVLDLTSFQLHDLDSVEFP-TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAA 85
             L +++ +L  L+    P   L  LDL+ N L  ++        L+ L L  N I    
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK 340

Query: 86  IEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKE 145
           +           L+ L L  N        ++F+ ++   V   +                
Sbjct: 341 L------STHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQL----EHG 390

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGL 205
           L   +++ P ++ +  +  L  +     R +          +  +    + I       L
Sbjct: 391 LCCKESDKPYLDRLLQYIALTSVVEKVQRAQ--GRCSATDTINSVQSLSHYITQQGGVPL 448

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
           +  +++  + N L            E   L++  I + + L  L      ++   +L   
Sbjct: 449 QGNEQLEAEVNELR----------AEVQQLTNEQIQQEQLLQGLHAEIDTNLRRYRLPKD 498

Query: 266 DDIQNLSRLEDLW 278
              ++   L  ++
Sbjct: 499 GLARSSDNLNKVF 511

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (314), Expect = 5e-32
 Identities = 76/312 (24%), Positives = 131/312 (41%), Gaps = 32/312 (10%)

Query: 24  LSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           +S   ++L      ++ S  F   + L ELDLTA  L+ L S +  LS LKKL L  N  
Sbjct: 254 MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKF 313

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFK---KLSVFDVSFNEITSSHGLSN 138
           ++  +  IS       L  L ++ N           +    L   D+S ++I +S   + 
Sbjct: 314 EN--LCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNL 370

Query: 139 V---TDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVMEN---LQNLTNLQEL 190
                  L+ L +S NE   +  E  +    L++L+    RL+V +     QNL  L+ L
Sbjct: 371 QLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 191 WLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG-----FEECIALEELYLSHNGISK 242
            L  + + + +     GL  ++ ++LQ N             +    LE L LS   +S 
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 243 MEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
           ++    ++L  ++ +D+S N+LT    + + +L  +  L L  N I  +   +  +    
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQ- 548

Query: 299 ETLTTIYLENNP 310
               TI L  NP
Sbjct: 549 --QRTINLRQNP 558

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (272), Expect = 2e-26
 Identities = 45/290 (15%), Positives = 99/290 (34%), Gaps = 34/290 (11%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLT--ELDLTANRLTSLDSRISHLSNLKKLSLRQNLID 82
            VLD  +  +H L   +       T   L+L  N +  ++      +  + L+       
Sbjct: 156 KVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL 215

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFK----KLSVFDVSFNEITSS----- 133
               + +     +  L      D     I            +   ++  +   +      
Sbjct: 216 LVIFKGLKN-STIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274

Query: 134 HGLSNVTDTLKELYVSKNEVPKMEE-IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQEL 190
           H  S     L+EL ++   + ++   +     L+ L   +N+   +      N  +L  L
Sbjct: 275 HCFSG----LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330

Query: 191 WLGRNRIKVVN----LCGLKCIKKISLQSNRLTSM----KGFEECIALEELYLSHNGISK 242
            +  N  ++      L  L+ ++++ L  + + +             L+ L LS+N    
Sbjct: 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLS 390

Query: 243 M--EGLSTLVNLHVLDVSSNKLTLVDD---IQNLSRLEDLWLNDNQIESL 287
           +  E       L +LD++  +L + D     QNL  L+ L L+ + ++  
Sbjct: 391 LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDIS 440

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (269), Expect = 5e-26
 Identities = 56/311 (18%), Positives = 111/311 (35%), Gaps = 34/311 (10%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLI 81
              N   +  +  L+++     P +   L+ + N L ++ +   S L NL  L L +  I
Sbjct: 11  KEVNKTYNCENLGLNEIPG-TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITS--SHGLS 137
               I   + + +   L+ L+L  N L+ + + ++   K L         I+S     L 
Sbjct: 70  YW--IHEDT-FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLH 126

Query: 138 NVTDTLKELYVSKN--EVPKMEEIEHFHDLQILEFGSNRLRV-----MENLQNLTNLQEL 190
           N   TL+ LY+  N     K+ +      L++L+F +N +       M +LQ  TNL  L
Sbjct: 127 NQK-TLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNL-SL 184

Query: 191 WLGRNRIKVVNLCGLKCI--KKISLQSNRLTSMK----GFEECIALEELYLSHNGISKME 244
            L  N I  +          + ++    +   +           +L            + 
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244

Query: 245 GLS----TLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
                    +++  +++  +    +        S L++L L    +  L S +  +    
Sbjct: 245 PAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGL---- 300

Query: 299 ETLTTIYLENN 309
            TL  + L  N
Sbjct: 301 STLKKLVLSAN 311

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  103 bits (260), Expect = 8e-25
 Identities = 55/315 (17%), Positives = 112/315 (35%), Gaps = 36/315 (11%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI---SHLSNLKKLSLR 77
            ++   T   L  F+     ++    +L            +   +       +++ ++L+
Sbjct: 206 SLNFGGTQNLLVIFKGLKNSTI---QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ 262

Query: 78  QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG- 135
           ++   +  I   + +   +GL+EL L    L ++P  +     L    +S N+  +    
Sbjct: 263 KHYFFN--ISSNT-FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQI 319

Query: 136 -LSNVTDTLKELYVSKNEVPKMEEIEHFHD---LQILEFGSNRLRVME----NLQNLTNL 187
             SN    L  L +  N            +   L+ L+   + +   +     L+NL++L
Sbjct: 320 SASNFPS-LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHL 378

Query: 188 QELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG---FEECIALEELYLSHNGIS 241
           Q L L  N    +          ++ + L   RL        F+    L+ L LSH+ + 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 242 KM--EGLSTLVNLHVLDVSSNKLTLVDDI-----QNLSRLEDLWLNDNQIESLESIVEAV 294
               +    L  L  L++  N     +       Q L RLE L L+   + S++    A 
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ--HAF 496

Query: 295 AGSRETLTTIYLENN 309
              +  +  + L +N
Sbjct: 497 TSLKM-MNHVDLSHN 510

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 36/177 (20%), Positives = 65/177 (36%), Gaps = 26/177 (14%)

Query: 27  TVLDLTSFQLHDLDSVEF---PTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLID 82
            +LDL   +L   D+         L  L+L+ + L     ++   L  L+ L+L+ N   
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVT 140
              I+  +    L  LE L+L    L  I   +    K ++  D+S N +TSS   +   
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
                L ++ N             + I+            L  L+  + + L +N +
Sbjct: 523 LKGIYLNLASNH------------ISIILPSL--------LPILSQQRTINLRQNPL 559

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (311), Expect = 5e-32
 Identities = 50/269 (18%), Positives = 97/269 (36%), Gaps = 34/269 (12%)

Query: 46  TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
                  +T + L    + +     N+K+L L  N +   +   ++       LE L L 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAP---FTKLELLNLS 66

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
            N L +  D+     L   D++ N +       +    ++ L+ + N + ++        
Sbjct: 67  SNVLYETLDLESLSTLRTLDLNNNYVQELLVGPS----IETLHAANNNISRVSC-SRGQG 121

Query: 165 LQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK 222
            + +   +N++ ++ +      + +Q L L  N I  VN   L                 
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----------------- 164

Query: 223 GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDD-IQNLSRLEDLWLND 281
                  LE L L +N I  ++G      L  LD+SSNKL  +    Q+ + +  + L +
Sbjct: 165 -AASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRN 223

Query: 282 NQIESLESIVEAVAGSRETLTTIYLENNP 310
           N++  +E  +         L    L  N 
Sbjct: 224 NKLVLIEKALRFSQ----NLEHFDLRGNG 248

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  101 bits (253), Expect = 4e-24
 Identities = 46/271 (16%), Positives = 90/271 (33%), Gaps = 38/271 (14%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
            +L+L+S  L++   +E  + L  LDL  N +      +    +++ L    N I    +
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE----LLVGPSIETLHAANNNISR--V 114

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTDTLK 144
                     G + + L +NK+  + D+      ++   D+  NEI +            
Sbjct: 115 SC----SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT------------ 158

Query: 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NL 202
                   V   E       L+ L    N +  ++       L+ L L  N++  +    
Sbjct: 159 --------VNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEF 210

Query: 203 CGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGIS---KMEGLSTLVNLHVLDVS 258
                +  ISL++N+L  + K       LE   L  NG       +  S    +  +   
Sbjct: 211 QSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 259 SNKLTLVDDIQNLSRLEDLWLNDNQIESLES 289
           + K     + +  +            E L +
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPA 301

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 75.3 bits (185), Expect = 3e-15
 Identities = 29/136 (21%), Positives = 51/136 (37%), Gaps = 14/136 (10%)

Query: 179 ENLQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEEL 233
           E  QN    +   +  + +K            +K++ L  N L+ +          LE L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 234 YLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEA 293
            LS N + +   L +L  L  LD+++N +    ++     +E L   +N I  +      
Sbjct: 64  NLSSNVLYETLDLESLSTLRTLDLNNNYVQ---ELLVGPSIETLHAANNNISRVS----- 115

Query: 294 VAGSRETLTTIYLENN 309
                +    IYL NN
Sbjct: 116 -CSRGQGKKNIYLANN 130

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.2 bits (177), Expect = 3e-14
 Identities = 44/283 (15%), Positives = 90/283 (31%), Gaps = 29/283 (10%)

Query: 27  TVLDLTSFQLHDLDSVEFP---TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLID- 82
             LDL   ++  ++  E       L  L+L  N +  +  ++   + LK L L  N +  
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKTLDLSSNKLAF 205

Query: 83  -DAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVT 140
                +        AG+  + LR+NKL+ I   +   + L  FD+  N           +
Sbjct: 206 MGPEFQS------AAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFS 259

Query: 141 DTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNR 196
              +   V+K  V K+     E      +  +G+     +       L  L+        
Sbjct: 260 KNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLS 319

Query: 197 IKVVNLCGLKC-------IKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKMEGLS 247
            +      L+C        ++I     +  ++         A   L      + +     
Sbjct: 320 GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNG 379

Query: 248 TLVNLHV---LDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
              +  +   L  +  ++ L    +  S L+ L     + E +
Sbjct: 380 RRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEM 422

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 71.4 bits (175), Expect = 6e-14
 Identities = 42/282 (14%), Positives = 84/282 (29%), Gaps = 23/282 (8%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             L+L    ++D+        L  LDL++N+L  +       + +  +SLR N +    I
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL--I 229

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKL-SVFDVSFNEITSSHGLSNVTDTLKE 145
           E          LE   LR N          F K   V  V+   +    G +    T+  
Sbjct: 230 EKA--LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQ---------NLTNLQELWLGRNR 196
           L        +         L  L+   + L   +  +         N    +E+   + +
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347

Query: 197 IKVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEGLST-LV 250
            + V        +    +  +   L      G      L+       G  +++  +    
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHATEEQS 407

Query: 251 NLHVLDVSSNKLTLVDDIQNLSR---LEDLWLNDNQIESLES 289
            L +L     +   +   Q   +   + D  +  ++   L  
Sbjct: 408 PLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  124 bits (314), Expect = 8e-32
 Identities = 67/305 (21%), Positives = 132/305 (43%), Gaps = 36/305 (11%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             LDL+   +  L+S  F    +L  L+L  N++  +       L NL+ L+L  NL+ +
Sbjct: 269 RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGE 328

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDV--SIFKKLSVFDVSFNEITSSHGLSNVTD 141
             +   + +  L  +  + L+ N +  I D      +KL   D+  N +T+ H + +   
Sbjct: 329 --LYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS--- 382

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN---LQNLTNLQELWLGRNRIK 198
            + ++++S N++  + +I       ++    NRL  ++    L  + +LQ L L +NR  
Sbjct: 383 -IPDIFLSGNKLVTLPKINLT--ANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFS 439

Query: 199 VV----NLCGLKCIKKISLQSNRLTSMKG-------FEECIALEELYLSHNGISKMEG-- 245
                        ++++ L  N L            FE    L+ LYL+HN ++ +    
Sbjct: 440 SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV 499

Query: 246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305
            S L  L  L ++SN+LT++      + LE L ++ NQ+ +             +L+ + 
Sbjct: 500 FSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLAPN------PDVFVSLSVLD 553

Query: 306 LENNP 310
           + +N 
Sbjct: 554 ITHNK 558

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 88.3 bits (219), Expect = 2e-19
 Identities = 49/311 (15%), Positives = 96/311 (30%), Gaps = 64/311 (20%)

Query: 38  DLDSV-EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           +L  V +       L L+ N + ++ +     L  L+ L L         I+  + +  L
Sbjct: 15  NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLT-IDKEA-FRNL 72

Query: 96  AGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNE 152
             L  L L  +K+  +     F     L    + F  ++ +                   
Sbjct: 73  PNLRILDLGSSKIYFLHP-DAFQGLFHLFELRLYFCGLSDAVLKDGY------------- 118

Query: 153 VPKMEEIEHFHDLQILEFGSNRLRVME---NLQNLTNLQELWLGRNRIKVVNLCGLKCIK 209
                   +   L  L+   N++R +    +   L +L+ +    N+I +V    L+ ++
Sbjct: 119 ------FRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 210 KISLQSNRLTSMK-------GFEEC------IALEELYLSHNGISKM------------- 243
             +L    L +          + +C      + LE L +S NG +               
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 244 -EGLSTLVNLHVLDVSSNKLTLVD----DIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
              L    ++       + +   D         S +  L L+   + SL S V       
Sbjct: 233 AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKD- 291

Query: 299 ETLTTIYLENN 309
             L  + L  N
Sbjct: 292 --LKVLNLAYN 300

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 69.8 bits (171), Expect = 3e-13
 Identities = 39/204 (19%), Positives = 76/204 (37%), Gaps = 21/204 (10%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             LDL    L  +    F  ++ ++ L+ N+L +L            + L +N +++  +
Sbjct: 365 QTLDLRDNALTTIH---FIPSIPDIFLSGNKLVTLPK---INLTANLIHLSENRLEN--L 416

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSHGLSNVTDT- 142
           + +     +  L+ LIL  N+               L    +  N +  +       D  
Sbjct: 417 DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476

Query: 143 -----LKELYVSKN---EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGR 194
                L+ LY++ N    +P      H   L+ L   SNRL V+ +     NL+ L + R
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPP-GVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISR 535

Query: 195 NRIKVVNLCGLKCIKKISLQSNRL 218
           N++   N      +  + +  N+ 
Sbjct: 536 NQLLAPNPDVFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 68.3 bits (167), Expect = 8e-13
 Identities = 47/212 (22%), Positives = 87/212 (41%), Gaps = 18/212 (8%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFP---TNLTELDLTANRLTSLDSR--ISHLSNLKKLS 75
           +I+L+  ++ L+  +L +LD + F     +L  L L  NR +S       S   +L++L 
Sbjct: 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLF 457

Query: 76  LRQNLIDDAAIEPISRWDALAG---LEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEI 130
           L +N++  A    +  WD   G   L+ L L  N L  +P         L    ++ N +
Sbjct: 458 LGENMLQLAWETELC-WDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRL 516

Query: 131 TSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQEL 190
           T     +++   L+ L +S+N++      + F  L +L+   N+      L    N    
Sbjct: 517 TVLSH-NDLPANLEILDISRNQLLAPNP-DVFVSLSVLDITHNKFICECELSTFIN---- 570

Query: 191 WLGRNRIKVVNL-CGLKCIKKISLQSNRLTSM 221
           WL    + +      + C+   S     L S+
Sbjct: 571 WLNHTNVTIAGPPADIYCVYPDSFSGVSLFSL 602

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score =  123 bits (310), Expect = 1e-31
 Identities = 54/255 (21%), Positives = 101/255 (39%), Gaps = 9/255 (3%)

Query: 63  SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSV 122
           +R SH+      +   N         +    + +  E ++L+D       D +  ++L  
Sbjct: 294 NRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFR 353

Query: 123 FDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQ 182
            ++S  + T           L+EL   +N+   +  I     L  L +    L+    L+
Sbjct: 354 CELSVEKSTVLQSELESCKELQELEP-ENKWCLLTIILLMRALDPLLYEKETLQYFSTLK 412

Query: 183 NLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSH 237
            +  ++  +L   R K +            ++ + L    LT +   E+ + +  L LSH
Sbjct: 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSH 472

Query: 238 NGISKME-GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAG 296
           N +  +   L+ L  L VL  S N L  VD + NL RL++L L +N+++   +I      
Sbjct: 473 NRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQP--LV 530

Query: 297 SRETLTTIYLENNPC 311
           S   L  + L+ N  
Sbjct: 531 SCPRLVLLNLQGNSL 545

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 88.3 bits (218), Expect = 2e-19
 Identities = 39/222 (17%), Positives = 84/222 (37%), Gaps = 13/222 (5%)

Query: 45  PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
              L   +L+  + T L S +     L++L           I  +   D L   +E +  
Sbjct: 348 DEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQY 407

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
            + L  +      +   + D+    +  +  L      ++ L+++  ++  +  +E    
Sbjct: 408 FSTLKAV---DPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLL 464

Query: 165 LQILEFGSNRLRVME-NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK 222
           +  L+   NRLR +   L  L  L+ L    N ++ V  +  L  ++++ L +NRL    
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 223 GFEE---CIALEELYLSHNGISKMEGLSTLV-----NLHVLD 256
             +    C  L  L L  N + + EG+   +     ++  + 
Sbjct: 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 67.9 bits (165), Expect = 8e-13
 Identities = 28/126 (22%), Positives = 53/126 (42%), Gaps = 8/126 (6%)

Query: 10  SAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLS 69
           S                 VL L    L  L  +E    +T LDL+ NRL +L   ++ L 
Sbjct: 427 SKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 70  NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDV---SIFKKLSVFDVS 126
            L+ L    N +++  ++ ++    L  L+EL+L +N+L +   +       +L + ++ 
Sbjct: 487 CLEVLQASDNALEN--VDGVAN---LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQ 541

Query: 127 FNEITS 132
            N +  
Sbjct: 542 GNSLCQ 547

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  120 bits (303), Expect = 5e-31
 Identities = 62/279 (22%), Positives = 107/279 (38%), Gaps = 62/279 (22%)

Query: 44  FPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAG---LE 99
            P+N   L+L  N +  + +    HL +L+ L L +N I    IE      A  G   L 
Sbjct: 73  IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSI--RQIEV----GAFNGLASLN 126

Query: 100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI 159
            L L DN L  IP          F            LS     L+EL++  N        
Sbjct: 127 TLELFDNWLTVIPS-------GAF----------EYLSK----LRELWLRNNP------- 158

Query: 160 EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGR-NRIKVVN---LCGLKCIKKISLQS 215
                ++ +   +           + +L  L LG   +++ ++     GL  +K ++L  
Sbjct: 159 -----IESIPSYA--------FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGM 205

Query: 216 NRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNL 271
             +  M      + LEEL +S N   ++       L +L  L V +++++L++      L
Sbjct: 206 CNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGL 265

Query: 272 SRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           + L +L L  N + SL      +      L  ++L +NP
Sbjct: 266 ASLVELNLAHNNLSSLP---HDLFTPLRYLVELHLHHNP 301

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 75.2 bits (185), Expect = 3e-15
 Identities = 50/228 (21%), Positives = 87/228 (38%), Gaps = 60/228 (26%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
            L++   L+L    L  + S  F   + L EL L  N + S+ S   + + +L +L L +
Sbjct: 121 GLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGE 180

Query: 79  NLIDDAAIEPISRWDALAG---LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG 135
                  +E IS   A  G   L+ L L    +  +P+      L               
Sbjct: 181 L----KKLEYISE-GAFEGLFNLKYLNLGMCNIKDMPN---LTPLV-------------- 218

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
                  L+EL +S N                +  GS           L++L++LW+  +
Sbjct: 219 ------GLEELEMSGNH------------FPEIRPGS--------FHGLSSLKKLWVMNS 252

Query: 196 RIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHN 238
           ++ ++      GL  + +++L  N L+S+    F     L EL+L HN
Sbjct: 253 QVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  120 bits (302), Expect = 6e-31
 Identities = 65/283 (22%), Positives = 112/283 (39%), Gaps = 58/283 (20%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L  V     TN   L+L  N++  +      HL +L+ L L +N I    IE  + ++ L
Sbjct: 55  LREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHI--RTIEIGA-FNGL 111

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155
           A L  L L DN+L  IP+         F            LS     LKEL++  N    
Sbjct: 112 ANLNTLELFDNRLTTIPN-------GAF----------VYLSK----LKELWLRNNP--- 147

Query: 156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGR-NRIKVVN---LCGLKCIKKI 211
                    ++ +   +           + +L+ L LG   R+  ++     GL  ++ +
Sbjct: 148 ---------IESIPSYA--------FNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYL 190

Query: 212 SLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD-- 267
           +L    L  +      I L+EL LS N +S +       L++L  L +  +++ +++   
Sbjct: 191 NLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
             NL  L ++ L  N +  L      +      L  I+L +NP
Sbjct: 251 FDNLQSLVEINLAHNNLTLLP---HDLFTPLHHLERIHLHHNP 290

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.5 bits (191), Expect = 4e-16
 Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 34/201 (16%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLI-- 81
            +L L+   +  ++   F    NL  L+L  NRLT++ +    +LS LK+L LR N I  
Sbjct: 91  EILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIES 150

Query: 82  ------------------DDAAIEPISRWDALAG---LEELILRDNKLMKIPDVSIFKKL 120
                             +   +  IS   A  G   L  L L    L +IP+++   KL
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISE-GAFEGLSNLRYLNLAMCNLREIPNLTPLIKL 209

Query: 121 SVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLR 176
              D+S N +++        +   L++L++ ++++  +E    ++   L  +    N L 
Sbjct: 210 DELDLSGNHLSAIRPGSFQGLM-HLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268

Query: 177 VMEN--LQNLTNLQELWLGRN 195
           ++ +     L +L+ + L  N
Sbjct: 269 LLPHDLFTPLHHLERIHLHHN 289

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score =  117 bits (295), Expect = 1e-30
 Identities = 60/309 (19%), Positives = 110/309 (35%), Gaps = 51/309 (16%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
            N +   +S  L+ + S      +  LDL+ NR+T + +       NL+ L L  N I+ 
Sbjct: 32  RNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN- 89

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             IE  S + +L  LE L L  N L  +         S F            LS+    L
Sbjct: 90  -TIEEDS-FSSLGSLEHLDLSYNYLSNLSS-------SWFK----------PLSS----L 126

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEF----GSNRLRVMEN--LQNLTNLQELWLGRNRI 197
             L +  N    + E   F  L  L+       +    ++      LT L+EL +  + +
Sbjct: 127 TFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186

Query: 198 KVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKME-------- 244
           +      L  ++ +  + L   +   +     +   ++E L L    +            
Sbjct: 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246

Query: 245 --GLSTLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETL 301
              L        + ++   L  ++  +  +S L +L  + NQ++S+            +L
Sbjct: 247 TNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD--GIFDRL-TSL 303

Query: 302 TTIYLENNP 310
             I+L  NP
Sbjct: 304 QKIWLHTNP 312

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  116 bits (292), Expect = 3e-30
 Identities = 58/288 (20%), Positives = 124/288 (43%), Gaps = 44/288 (15%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
           T+LDL +  + +L   +F    +L  L L  N+++ +  +  S L  L+KL + +N +  
Sbjct: 57  TLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-- 114

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSS------- 133
             I P    +  + L EL + DN++ K+P   +F  L      ++  N + +S       
Sbjct: 115 VEIPP----NLPSSLVELRIHDNRIRKVPK-GVFSGLRNMNCIEMGGNPLENSGFEPGAF 169

Query: 134 HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELW 191
            GL      L  L +S+ ++  + + +    L  L    N+++ +E   L   + L  L 
Sbjct: 170 DGLK-----LNYLRISEAKLTGIPK-DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 192 LGRNRIKVVN---LCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISK----- 242
           LG N+I+++    L  L  ++++ L +N+L+ +  G  +   L+ +YL  N I+K     
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVND 283

Query: 243 ---MEGLSTLVNLHVLDVSSNKLTLV----DDIQNLSRLEDLWLNDNQ 283
              +         + + + +N +          + ++    +   + +
Sbjct: 284 FCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  115 bits (291), Expect = 4e-30
 Identities = 70/310 (22%), Positives = 110/310 (35%), Gaps = 50/310 (16%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
              V+  +   L  +   E   + T LDL  N ++ L       L +L  L L  N I  
Sbjct: 34  HLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI-- 90

Query: 84  AAIEPISRWDALAG---LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSS-----HG 135
           + I       A +    L++L +  N L++IP  ++   L    +  N I         G
Sbjct: 91  SKIHE----KAFSPLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSG 145

Query: 136 LSNVTDTLKELYVSKNEVPKME-EIEHFHD--LQILEFGSNRLRVMENLQNLTNLQELWL 192
           L N    +  + +  N +     E   F    L  L     +L  +        L EL L
Sbjct: 146 LRN----MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK-DLPETLNELHL 200

Query: 193 GRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLV 250
             N+I+            I L+               L  L L HN I  +E   LS L 
Sbjct: 201 DHNKIQ-----------AIELED--------LLRYSKLYRLGLGHNQIRMIENGSLSFLP 241

Query: 251 NLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIV---EAVAGSRETLTTIYL 306
            L  L + +NKL+ V   + +L  L+ ++L+ N I  +             R     I L
Sbjct: 242 TLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

Query: 307 ENNPCKIFKL 316
            NNP   +++
Sbjct: 302 FNNPVPYWEV 311

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  119 bits (299), Expect = 6e-30
 Identities = 52/351 (14%), Positives = 113/351 (32%), Gaps = 57/351 (16%)

Query: 16  PDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTA-------NRLTSLDSRISHL 68
               ++ D    + DL    ++    ++     + + L         NR+T +   I  L
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 69  SNLKKLSLRQNLIDDAAIEPISR----------------WDALAGLEELILRDNKLMKIP 112
           + L+ +    +      I                     W  L  L ++ L +   M   
Sbjct: 448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQL 507

Query: 113 DVSIF--KKLSVFDVSFNEITSSHGLSNVTDT----------LKELYVSKN---EVPKME 157
              ++   +L   +++ N   S+  L                ++  Y+  N   E P   
Sbjct: 508 PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASA 567

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQ 214
            ++    L +L+   N++R +E       L +L L  N+I+ +          ++ +   
Sbjct: 568 SLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFS 627

Query: 215 SNRLTS---MKGFEECIALEELYLSHNGISKME-------GLSTLVNLHVLDVSSNKLTL 264
            N+L     +   +    +  +  S+N I                +N   + +S N++  
Sbjct: 628 HNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687

Query: 265 VDD--IQNLSRLEDLWLNDNQIESLE----SIVEAVAGSRETLTTIYLENN 309
                    S +  + L++N + S+        +    +   LTTI L  N
Sbjct: 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN 738

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  116 bits (293), Expect = 5e-29
 Identities = 56/298 (18%), Positives = 104/298 (34%), Gaps = 41/298 (13%)

Query: 27  TVLDLTSFQLHDL-DSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83
            +  +    L +   S        L  LD   N++  L++       L  L L  N I++
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYNQIEE 609

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITS-----SHG 135
             I P         +E L    NKL  IP++        +   D S+N+I S     S  
Sbjct: 610 --I-PEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 136 LSNVTDT-LKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR---------VMENLQN 183
           + +        + +S NE+ K   E       +  +   +N +             N +N
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN 726

Query: 184 LTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHN 238
              L  + L  N++  +        L  +  + +  N  +S          L+   + H 
Sbjct: 727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786

Query: 239 GISKM--------EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLE 288
             ++          G++T  +L  L + SN +  VD+ +   +L  L + DN   S++
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE-KLTPQLYILDIADNPNISID 843

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  114 bits (286), Expect = 3e-28
 Identities = 50/326 (15%), Positives = 112/326 (34%), Gaps = 46/326 (14%)

Query: 24  LSNTVLDLTSFQLHDLDSVEFP--TNLTELDLT-ANRLTSLDSRISHLSNLKKLSLRQNL 80
           +     +    + ++ + + +    +LT+++L     +T L   +  L  L+ L++  N 
Sbjct: 467 VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR 526

Query: 81  IDDAAIEPISRW------DALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEIT 131
              AA             D    ++   +  N L + P  +      KL + D   N++ 
Sbjct: 527 GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR 586

Query: 132 SSHGLSNVTDTLKELYVSKN---EVPKMEEIEHFHDLQILEFGSNRLRV---MENLQNLT 185
                      L +L +  N   E+P+ +       ++ L F  N+L+    + N +++ 
Sbjct: 587 HLEAFGTNV-KLTDLKLDYNQIEEIPE-DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVY 644

Query: 186 NLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYL 235
            +  +    N+I           +         ++L  N +     + F     +  + L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704

Query: 236 SHNGIS---------KMEGLSTLVNLHVLDVSSNKLTLVDD---IQNLSRLEDLWLNDNQ 283
           S+N ++         K         L  +D+  NKLT + D      L  L ++ ++ N 
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNC 764

Query: 284 IESLESIVEAVAGSRETLTTIYLENN 309
             S  +       +   L    + + 
Sbjct: 765 FSSFPT----QPLNSSQLKAFGIRHQ 786

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (263), Expect = 4e-25
 Identities = 52/311 (16%), Positives = 97/311 (31%), Gaps = 35/311 (11%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDA 84
           T L L  F             T L  L    +  T              +S  +      
Sbjct: 326 TGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRM 385

Query: 85  AIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSV-------FDVSFNEITS-SHGL 136
             + +   D    L    L  + + + P++   KK S             N IT  S  +
Sbjct: 386 HYKKMF-LDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAI 444

Query: 137 SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN-LQNLTNLQELWLGRN 195
             +T  L+ +Y + +      +             + +    E    NL +L ++ L   
Sbjct: 445 QRLTK-LQIIYFANSPFT--YDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNC 501

Query: 196 RIKVV---NLCGLKCIKKISLQSNRLTSM-----------KGFEECIALEELYLSHNGIS 241
                    L  L  ++ +++  NR  S               +    ++  Y+ +N + 
Sbjct: 502 PNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561

Query: 242 KM---EGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
           +      L  +V L +LD   NK+  ++      +L DL L+ NQIE +     A     
Sbjct: 562 EFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ- 620

Query: 299 ETLTTIYLENN 309
             +  +   +N
Sbjct: 621 --VEGLGFSHN 629

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 87.6 bits (217), Expect = 3e-19
 Identities = 41/278 (14%), Positives = 81/278 (29%), Gaps = 31/278 (11%)

Query: 46  TNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
             +T L L            I  L+ LK LS   +    +              EE   R
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
                K   +   ++L++ D+  + I  +  +  +               K +      D
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPI---------------KKDSRISLKD 427

Query: 165 LQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGF 224
            QI    +    + + +Q LT LQ ++   +     N+                     +
Sbjct: 428 TQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSW 487

Query: 225 EECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLT-----------LVDDIQNL 271
                L ++ L +        + L  L  L  L+++ N+             L DD    
Sbjct: 488 SNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTG 547

Query: 272 SRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
            +++  ++  N +E       A       L  +   +N
Sbjct: 548 PKIQIFYMGYNNLEEF--PASASLQKMVKLGLLDCVHN 583

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 76.1 bits (187), Expect = 2e-15
 Identities = 40/242 (16%), Positives = 79/242 (32%), Gaps = 30/242 (12%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQN 79
            +D S   +      +          N + + L+ N +    + + +  S +  + L  N
Sbjct: 648 SVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNN 707

Query: 80  LI----DDAAIEPISRWDALAGLEELILRDNKLMKIPD---VSIFKKLSVFDVSFNEITS 132
           L+    +++       +     L  + LR NKL  + D    +    LS  DVS+N  +S
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767

Query: 133 -SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQE 189
                 N +  LK   +                    +   NR+       +    +L +
Sbjct: 768 FPTQPLNSSQ-LKAFGIRHQ----------------RDAEGNRILRQWPTGITTCPSLIQ 810

Query: 190 LWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEGLS 247
           L +G N I+ V+      +  + +  N   S+        I      L ++    + G  
Sbjct: 811 LQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDIRGCD 870

Query: 248 TL 249
            L
Sbjct: 871 AL 872

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score =  111 bits (279), Expect = 1e-29
 Identities = 28/154 (18%), Positives = 64/154 (41%), Gaps = 6/154 (3%)

Query: 141 DTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI--- 197
           ++L  + ++   V  +  IE+ H+++ L   +        +  L+NL+ L +    +   
Sbjct: 44  NSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSD 103

Query: 198 KVVNLCGLKCIKKISLQSNRLT--SMKGFEECIALEELYLSHN-GISKMEGLSTLVNLHV 254
           K+ NL GL  +  + +  +      +        +  + LS+N  I+ +  L TL  L  
Sbjct: 104 KIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKS 163

Query: 255 LDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLE 288
           L++  + +     I++  +L  L+     I   +
Sbjct: 164 LNIQFDGVHDYRGIEDFPKLNQLYAFSQTIGGKK 197

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 81.5 bits (202), Expect = 1e-18
 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 26/172 (15%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T + L +  + DL  +E+  N+ +L +     T+ +  IS LSNL++L +    +    I
Sbjct: 47  TYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKDVTSDKI 105

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +S    L  L  L +  +                     + +T  + L      +  +
Sbjct: 106 PNLS---GLTSLTLLDISHSAH-----------------DDSILTKINTLPK----VNSI 141

Query: 147 YVSKN-EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
            +S N  +  +  ++   +L+ L    + +     +++   L +L+     I
Sbjct: 142 DLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.5 bits (194), Expect = 2e-17
 Identities = 22/130 (16%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 183 NLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK 242
                    LG++    +    +  +  I+L +  +T + G E    +++L +++   + 
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN 80

Query: 243 MEGLSTLVNLHVLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300
              +S L NL  L +    +T   + ++  L+ L  L ++ +  +   SI+  +    + 
Sbjct: 81  YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD--SILTKINTLPK- 137

Query: 301 LTTIYLENNP 310
           + +I L  N 
Sbjct: 138 VNSIDLSYNG 147

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 57.3 bits (139), Expect = 5e-10
 Identities = 20/127 (15%), Positives = 42/127 (33%), Gaps = 21/127 (16%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAA 85
             L + +    + + +   +NL  L +    +TS     +S L++L  L +  +  DD+ 
Sbjct: 69  KDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSI 128

Query: 86  IEP--------------------ISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV 125
           +                      I     L  L+ L ++ + +     +  F KL+    
Sbjct: 129 LTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188

Query: 126 SFNEITS 132
               I  
Sbjct: 189 FSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 15/87 (17%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDA 84
           T+LD++     D    +      +  +DL+ N   +    +  L  LK L+++ + + D 
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHD- 173

Query: 85  AIEPISRWDALAGLEELILRDNKLMKI 111
               I        L +L      +   
Sbjct: 174 -YRGIED---FPKLNQLYAFSQTIGGK 196

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  115 bits (290), Expect = 4e-29
 Identities = 59/305 (19%), Positives = 121/305 (39%), Gaps = 43/305 (14%)

Query: 22  IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           +D     L+L +  L  L   E P +L  L  + N LT L      L +L   +     +
Sbjct: 69  LDRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
                      D    LE L + +N+L K+P++     L + DV  N +     L ++  
Sbjct: 127 ----------SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKK---LPDLPP 173

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN 201
           +L+ +    N++ ++ E+++   L  +   +N L+ + +L    +L+ +  G N ++ + 
Sbjct: 174 SLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEELP 231

Query: 202 -LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM-EGLSTLVNLHVLDVSS 259
            L  L  +  I   +N L ++   +   +LE L +  N ++ + E   +L  L V +   
Sbjct: 232 ELQNLPFLTTIYADNNLLKTLP--DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF 289

Query: 260 NKLT---------------LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTI 304
           + L+               +         LE+L +++N++  L +           L  +
Sbjct: 290 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA-------LPPRLERL 342

Query: 305 YLENN 309
               N
Sbjct: 343 IASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  113 bits (286), Expect = 1e-28
 Identities = 49/252 (19%), Positives = 105/252 (41%), Gaps = 20/252 (7%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA--------- 96
           T L E    ++ LT +     ++ +  +     +  +  A         +A         
Sbjct: 11  TFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 97  -GLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155
               EL L +  L  +P+  +   L     S N +T    L  +  +LK L V  N +  
Sbjct: 71  RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLTE---LPELPQSLKSLLVDNNNLKA 125

Query: 156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQS 215
           + ++     L+ L   +N+L  +  LQN + L+ + +  N +K +       ++ I+  +
Sbjct: 126 LSDL--PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLP-DLPPSLEFIAAGN 182

Query: 216 NRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLE 275
           N+L  +   +    L  +Y  +N + K+  L   ++L  +   +N L  + ++QNL  L 
Sbjct: 183 NQLEELPELQNLPFLTAIYADNNSLKKLPDL--PLSLESIVAGNNILEELPELQNLPFLT 240

Query: 276 DLWLNDNQIESL 287
            ++ ++N +++L
Sbjct: 241 TIYADNNLLKTL 252

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  104 bits (262), Expect = 2e-25
 Identities = 51/269 (18%), Positives = 108/269 (40%), Gaps = 38/269 (14%)

Query: 43  EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102
           + P  L  L ++ N+L  L   + + S LK + +  N +           D    LE + 
Sbjct: 128 DLPPLLEYLGVSNNQLEKLPE-LQNSSFLKIIDVDNNSLK-------KLPDLPPSLEFIA 179

Query: 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF 162
             +N+L ++P++     L+      N +     L ++  +L+ +    N + ++ E+++ 
Sbjct: 180 AGNNQLEELPELQNLPFLTAIYADNNSLKK---LPDLPLSLESIVAGNNILEELPELQNL 236

Query: 163 HDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-----NLCGLKC---------- 207
             L  +   +N L+ + +L    +L+ L +  N +  +     +L  L            
Sbjct: 237 PFLTTIYADNNLLKTLPDL--PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSE 294

Query: 208 ----IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263
               +  ++  SN + S+   +   +LEEL +S+N + ++   +    L  L  S N L 
Sbjct: 295 LPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLA 350

Query: 264 LVDDIQNLSRLEDLWLNDNQIESLESIVE 292
            V +      L+ L +  N +     I E
Sbjct: 351 EVPE--LPQNLKQLHVEYNPLREFPDIPE 377

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 95.8 bits (239), Expect = 3e-22
 Identities = 58/302 (19%), Positives = 114/302 (37%), Gaps = 46/302 (15%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             +   + QL +L  ++    LT +    N L  L        +L+ +    N++++   
Sbjct: 176 EFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKL---PDLPLSLESIVAGNNILEE--- 229

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             +     L  L  +   +N L  +PD  +   L   +V  N +T    L  +  +L  L
Sbjct: 230 --LPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTD---LPELPQSLTFL 282

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCG 204
            VS+N    + E+    +L  L   SN +R + +L    +L+EL +  N++  +      
Sbjct: 283 DVSENIFSGLSEL--PPNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIELPALPPR 338

Query: 205 LKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL-----------------S 247
           L+   ++    N L  +   E    L++L++ +N + +   +                  
Sbjct: 339 LE---RLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPE 393

Query: 248 TLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLE 307
              NL  L V +N L    DI     +EDL +N  ++            + + L     E
Sbjct: 394 LPQNLKQLHVETNPLREFPDI--PESVEDLRMNSERVVDPYEFAHE---TTDKLEDDVFE 448

Query: 308 NN 309
           ++
Sbjct: 449 HH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 90.1 bits (224), Expect = 3e-20
 Identities = 46/263 (17%), Positives = 97/263 (36%), Gaps = 33/263 (12%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             +   +  L +L  ++    LT +    N L +L      L  L         +     
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLP---- 273

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
                 +    L  L + +N    +    +   L   + S NEI S   L ++  +L+EL
Sbjct: 274 ------ELPQSLTFLDVSENIFSGLS--ELPPNLYYLNASSNEIRS---LCDLPPSLEEL 322

Query: 147 YVSKNEVPKMEEI-EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLC 203
            VS N   K+ E+      L+ L    N L  +  L    NL++L +  N ++       
Sbjct: 323 NVSNN---KLIELPALPPRLERLIASFNHLAEVPEL--PQNLKQLHVEYNPLREFPDIPE 377

Query: 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263
            ++ ++     ++ L  +   E    L++L++  N + +   +    ++  L ++S ++ 
Sbjct: 378 SVEDLR----MNSHLAEV--PELPQNLKQLHVETNPLREFPDI--PESVEDLRMNSERVV 429

Query: 264 LVDDI--QNLSRLEDLWLNDNQI 284
              +   +   +LED     +  
Sbjct: 430 DPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 47/229 (20%), Positives = 89/229 (38%), Gaps = 29/229 (12%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI----- 81
           T +   +  L  L   + P +L  L++  N LT L      L+ L       + +     
Sbjct: 240 TTIYADNNLLKTLP--DLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP 297

Query: 82  -------DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSH 134
                      I  +   D    LEEL + +NKL+++P  ++  +L     SFN +    
Sbjct: 298 NLYYLNASSNEIRSLC--DLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAE-- 351

Query: 135 GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGR 194
            +  +   LK+L+V  N + +  +I     ++ L   S+   V E  QNL   ++L +  
Sbjct: 352 -VPELPQNLKQLHVEYNPLREFPDI--PESVEDLRMNSHLAEVPELPQNL---KQLHVET 405

Query: 195 NRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECI--ALEELYLSHNGIS 241
           N ++       + ++ + + S R+     F       LE+    H+   
Sbjct: 406 NPLREFPDI-PESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  113 bits (285), Expect = 5e-28
 Identities = 52/339 (15%), Positives = 116/339 (34%), Gaps = 52/339 (15%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLID 82
           DL    ++    Q     S       T++   +N +T +   +  L+ L++  +  +   
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 83  DAAIEPI----------------SRWDALAGLEELILRDNKLMKIPDVSIF--KKLSVFD 124
              I                    +WD L  L ++ + +   +      +    ++ + +
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 125 VSFNEITS----SHGLSNVTDT-----LKELYVSKN---EVPKMEEIEHFHDLQILEFGS 172
           V+ N   S          + D      ++ +Y+  N     P    ++    L +LE   
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 173 NRLR-VMENLQNLTNLQELWLGRNRIKVV--NLCG-LKCIKKISLQSNRLTS---MKGFE 225
           N+L   +    +   L  L L  N+I  +  N CG  + ++ +S   N+L     +   +
Sbjct: 340 NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAK 399

Query: 226 ECIALEELYLSHNGISKM---------EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRL 274
               +  +  S+N I  +               +N+  +++S+N+++    +     S L
Sbjct: 400 SVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPL 459

Query: 275 EDLWLNDNQIESLESIVEAVA----GSRETLTTIYLENN 309
             + L  N +  +             +   LT+I L  N
Sbjct: 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN 498

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  105 bits (263), Expect = 4e-25
 Identities = 59/304 (19%), Positives = 101/304 (33%), Gaps = 43/304 (14%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
             L  L+   N+L            L  L+L  N I +    P +       +E L    
Sbjct: 330 KKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEI---PANFCGFTEQVENLSFAH 386

Query: 106 NKLMKIPDVSIFKKLS---VFDVSFNEITSSHGLSNVT--------DTLKELYVSKN--- 151
           NKL  IP++   K +S     D S+NEI S  G +             +  + +S N   
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS 446

Query: 152 EVPKMEEIEHFHDLQILEFGSNRL---------RVMENLQNLTNLQELWLGRNRIKVV-- 200
           + PK E       L  +    N L            EN +N   L  + L  N++  +  
Sbjct: 447 KFPK-ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSD 505

Query: 201 --NLCGLKCIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKM--------EGLSTL 249
                 L  +  I L  N  +           L+   + +   ++         EG++  
Sbjct: 506 DFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC 565

Query: 250 VNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
            +L  L + SN +  V++ +    +  L + DN   S+   +  V    E    +   + 
Sbjct: 566 PSLTQLQIGSNDIRKVNE-KITPNISVLDIKDNPNISI--DLSYVCPYIEAGMYMLFYDK 622

Query: 310 PCKI 313
              I
Sbjct: 623 TQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.7 bits (249), Expect = 3e-23
 Identities = 43/316 (13%), Positives = 110/316 (34%), Gaps = 33/316 (10%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFPTNLTEL----DLTANRLTSLDSRISHLSNLKKLSLR 77
            L+   VL L S      + +  P  ++           R+    + + +        L 
Sbjct: 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162

Query: 78  QNLI-DDAAIEPISRWDALA-GLEELILRDNKLMKIPDVSIFK--KLSVFDVSFNEITSS 133
           ++ I  D   + I +   +     ++    N +  +   ++ +  KL  F +  +   + 
Sbjct: 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK-AVMRLTKLRQFYMGNSPFVAE 221

Query: 134 HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL--RVMENLQNLTNLQELW 191
           +      +   E            + ++  DL  +E  +     ++   L+ L  +Q + 
Sbjct: 222 NICEAWENENSEYAQQYKTED--LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLIN 279

Query: 192 LGRNRIKVV-----------NLCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSH 237
           +  NR               +    + I+ I +  N L +       ++   L  L   +
Sbjct: 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339

Query: 238 NGISK-MEGLSTLVNLHVLDVSSNKLT-LVDDI-QNLSRLEDLWLNDNQIESLESIVEAV 294
           N +   +    + + L  L+++ N++T +  +      ++E+L    N+++ + +I +  
Sbjct: 340 NQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD-- 397

Query: 295 AGSRETLTTIYLENNP 310
           A S   ++ I    N 
Sbjct: 398 AKSVSVMSAIDFSYNE 413

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 80.9 bits (200), Expect = 5e-17
 Identities = 35/292 (11%), Positives = 87/292 (29%), Gaps = 37/292 (12%)

Query: 46  TNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
             +T L L     +  +   I  L+ L+ L+L  +       E +     ++       +
Sbjct: 81  GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKV--NERLFGPKGISANMSDEQK 138

Query: 105 DNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTD------TLKELYVSKN---EV 153
               M      +    +    D+  + I S     ++           ++    N    V
Sbjct: 139 QKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFV 198

Query: 154 PKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISL 213
            K   +     L+    G++        +   N    +  + + + +    LK +  + +
Sbjct: 199 SK--AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEV 256

Query: 214 QSNRLTSM--KGFEECIALEELYLSHN----------GISKMEGLSTLVNLHVLDVSSNK 261
            +    +      +    ++ + ++ N              +        + ++ +  N 
Sbjct: 257 YNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 262 LTLV---DDIQNLSRLEDLWLNDNQIESL-ESIVEAVAGSRETLTTIYLENN 309
           L        +Q + +L  L    NQ+E    +      GS   L ++ L  N
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF-----GSEIKLASLNLAYN 363

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 74.3 bits (183), Expect = 6e-15
 Identities = 42/237 (17%), Positives = 83/237 (35%), Gaps = 39/237 (16%)

Query: 46  TNLTELDLTANRLTSLDSR--------ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG 97
           + ++ +D + N + S+D +             N+  ++L  N I      P   +   + 
Sbjct: 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISK---FPKELFSTGSP 458

Query: 98  LEELILRDNKLMKIPDVSIF---------KKLSVFDVSFNEITS---SHGLSNVTDTLKE 145
           L  + L  N L +IP  S+            L+  D+ FN++T        + +   L  
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY-LVG 517

Query: 146 LYVSKN---EVPKMEEIEHFHDLQILEFGSNRLRVM--------ENLQNLTNLQELWLGR 194
           + +S N   + P   +  +   L+     + R            E +    +L +L +G 
Sbjct: 518 IDLSYNSFSKFP--TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 195 NRIKVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEGLSTL 249
           N I+ VN      I  + ++ N   S+        I      L ++    + G   L
Sbjct: 576 NDIRKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 24/112 (21%), Positives = 41/112 (36%), Gaps = 7/112 (6%)

Query: 27  TVLDLTSFQLHDL-DSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83
           T +DL   +L  L D         L  +DL+ N  +   ++  + S LK   +R      
Sbjct: 491 TSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQ 550

Query: 84  A--AIEPISRW-DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS 132
               +            L +L +  N + K+ +  I   +SV D+  N   S
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRKVNE-KITPNISVLDIKDNPNIS 601

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  113 bits (284), Expect = 6e-28
 Identities = 61/307 (19%), Positives = 108/307 (35%), Gaps = 29/307 (9%)

Query: 24  LSNTVLDLTSFQLHDLDSVEFP---TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
           L+     L     +  D ++     TN++   L +  +  +    S+    + L L    
Sbjct: 257 LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCK 315

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV- 139
                   +     L  L+ L    NK            L   D+S N ++     S   
Sbjct: 316 FGQ--FPTLK----LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSD 369

Query: 140 --TDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM---ENLQNLTNLQELWLG 193
             T +LK L +S N V  M         L+ L+F  + L+ M       +L NL  L + 
Sbjct: 370 FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 429

Query: 194 RNRIKVVN---LCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKM--EG 245
               +V       GL  ++ + +  N          F E   L  L LS   + ++    
Sbjct: 430 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 489

Query: 246 LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303
            ++L +L VL++S N    +D    + L+ L+ L  + N I +     + +     +L  
Sbjct: 490 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTS--KKQELQHFPSSLAF 547

Query: 304 IYLENNP 310
           + L  N 
Sbjct: 548 LNLTQND 554

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  103 bits (259), Expect = 1e-24
 Identities = 54/299 (18%), Positives = 103/299 (34%), Gaps = 35/299 (11%)

Query: 27  TVLDLTSFQLHDLDSVEF------PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
             LDL+S ++  +   +       P     LDL+ N +  +         L KL+LR N 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKL-----MKIPDVSIFKKLSVFDVSFNEITSSHG 135
                ++       LAGLE   L   +      ++  D S  + L    +    +     
Sbjct: 212 DSLNVMKTCI--QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
             +    L                    ++      S  +  +++       Q L L   
Sbjct: 270 YLDDIIDL---------------FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 196 RIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM----EGLSTLVN 251
           +        LK +K+++  SN+  +     +  +LE L LS NG+S      +      +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 252 LHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
           L  LD+S N +  +  +   L +LE L    + ++ +     +V  S   L  + + + 
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHT 431

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.6 bits (246), Expect = 5e-23
 Identities = 57/278 (20%), Positives = 94/278 (33%), Gaps = 27/278 (9%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           +   L S  +  +    +      L+L   +     +    L +LK+L+   N   +   
Sbjct: 285 SSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT--LKLKSLKRLTFTSNKGGN--- 339

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIF----KKLSVFDVSFNEITSSHGLSNVTDT 142
                   L  LE L L  N L      S        L   D+SFN + +        + 
Sbjct: 340 --AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ 397

Query: 143 LKELYVSKNEVPKMEEIEHFHD---LQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRI 197
           L+ L    + + +M E   F     L  L+      RV  N     L++L+ L +  N  
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 457

Query: 198 KVV----NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG--LSTL 249
           +          L+ +  + L   +L  +    F    +L+ L +SHN    ++      L
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 517

Query: 250 VNLHVLDVSSNKLTLVDD---IQNLSRLEDLWLNDNQI 284
            +L VLD S N +            S L  L L  N  
Sbjct: 518 NSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 555

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 88.2 bits (219), Expect = 2e-19
 Identities = 51/283 (18%), Positives = 99/283 (34%), Gaps = 46/283 (16%)

Query: 24  LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR---ISHLSNLKKLSLRQNL 80
            S   L  TS +  +  S     +L  LDL+ N L+            ++LK L L  N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSSHGLS 137
           +    I   S +  L  LE L  + + L ++ + S+F  L      D+S      +    
Sbjct: 385 V----ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-- 438

Query: 138 NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR---VMENLQNLTNLQELWLGR 194
                                      L++L+   N  +   + +    L NL  L L +
Sbjct: 439 -------------------GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ 479

Query: 195 NRIKVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHN---GISKMEGL 246
            +++ ++      L  ++ +++  N   S+    ++   +L+ L  S N      K E  
Sbjct: 480 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 247 STLVNLHVLDVSSNKLT----LVDDIQNLSRLEDLWLNDNQIE 285
               +L  L+++ N           +Q +     L +   ++E
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERME 582

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.5 bits (212), Expect = 1e-18
 Identities = 61/304 (20%), Positives = 106/304 (34%), Gaps = 64/304 (21%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLI 81
            + N          + +     P +   LDL+ N L  L S        L+ L L +  I
Sbjct: 6   VVPNITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
               IE  + + +L+ L  LIL  N +  +   +                   GLS+   
Sbjct: 65  QT--IEDGA-YQSLSHLSTLILTGNPIQSLALGAF-----------------SGLSS--- 101

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKV 199
                                  LQ L      L  +EN  + +L  L+EL +  N I+ 
Sbjct: 102 -----------------------LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 200 VNL----CGLKCIKKISLQSNRLTSMKG--FEECIALE----ELYLSHNGISKME-GLST 248
             L      L  ++ + L SN++ S+          +      L LS N ++ ++ G   
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK 198

Query: 249 LVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY 305
            + LH L + +N  +L      IQ L+ LE   L   +  +  ++ +    + E L  + 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLT 258

Query: 306 LENN 309
           +E  
Sbjct: 259 IEEF 262

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score =  106 bits (267), Expect = 7e-28
 Identities = 45/163 (27%), Positives = 78/163 (47%), Gaps = 10/163 (6%)

Query: 150 KNEVPKMEEIEHFHDLQI----LEFGSNRLRVME-NLQNLTNLQELWLGRNRI-KVVNLC 203
           K+ +   EE +     +     L      +  M+  L  L   + L L  N I K+ +L 
Sbjct: 8   KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLS 67

Query: 204 GLKCIKKISLQSNRLTSMKGFEE-CIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKL 262
           G++ ++ +SL  N +  ++  +     LEEL++S+N I+ + G+  LVNL VL +S+NK+
Sbjct: 68  GMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKI 127

Query: 263 TLVDDIQNLSR---LEDLWLNDNQIESLESIVEAVAGSRETLT 302
           T   +I  L+    LEDL L  N + +      A +  R  + 
Sbjct: 128 TNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 76.6 bits (189), Expect = 7e-17
 Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 30/153 (19%)

Query: 48  LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNK 107
             EL      +  +D+ +S L   K L+L  N I+            ++ L  +      
Sbjct: 27  KVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-----------ISSLSGM------ 69

Query: 108 LMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQI 167
                     + L +  +  N I     L  V DTL+EL++S N++  +  IE   +L++
Sbjct: 70  ----------ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRV 119

Query: 168 LEFGSNR---LRVMENLQNLTNLQELWLGRNRI 197
           L   +N+      ++ L  L  L++L L  N +
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 68.2 bits (167), Expect = 9e-14
 Identities = 39/169 (23%), Positives = 71/169 (42%), Gaps = 17/169 (10%)

Query: 23  DLSNTVLDLTSFQLHDLD-SVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           +     L      +  +D ++        L L+ N +  + S +S + NL+ LSL +NLI
Sbjct: 24  EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISS-LSGMENLRILSLGRNLI 82

Query: 82  DDAAIEPISRWDALAG-LEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVT 140
                  I   DA+A  LEEL +  N++  +  +     L V  +S N+IT+   +  + 
Sbjct: 83  KK-----IENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLA 137

Query: 141 D--TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
               L++L ++ N +            +       R+ V++ L NL  L
Sbjct: 138 ALDKLEDLLLAGNPLYN-------DYKENNATSEYRIEVVKRLPNLKKL 179

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  111 bits (280), Expect = 7e-28
 Identities = 74/329 (22%), Positives = 131/329 (39%), Gaps = 65/329 (19%)

Query: 46  TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
           ++L  L L  N+   L++   + L+NL+ L+L Q  +D A +     +  L  LE L+LR
Sbjct: 79  SSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF-FKPLTSLEMLVLR 137

Query: 105 DNKLMKIPDVSIF---KKLSVFDVSFNEITSS-------------HGLSNVTDTLKELYV 148
           DN + KI   S F   ++  V D++FN++ S                L   + TL+++  
Sbjct: 138 DNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNE 197

Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVME-----NLQNLTNLQELWLGRNRIKVVNLC 203
                 K         +  L+   N  +        +    T +Q L L  +     +  
Sbjct: 198 YWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFG 257

Query: 204 -------------GLKC--IKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKMEG- 245
                        GL+   +K   L  +++ ++    F     LE+L L+ N I+K++  
Sbjct: 258 HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317

Query: 246 -LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIES---------------- 286
               L +L  L++S N L  +D    +NL +LE L L+ N I +                
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377

Query: 287 -----LESIVEAVAGSRETLTTIYLENNP 310
                L+S+ + +     +L  I+L  NP
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNP 406

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 79.8 bits (197), Expect = 7e-17
 Identities = 44/291 (15%), Positives = 94/291 (32%), Gaps = 58/291 (19%)

Query: 45  PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
           P ++  +DL+ N +  L+    S L +L+ L + Q       +   + +  L+ L  L L
Sbjct: 29  PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTP--GLVIRNNTFRGLSSLIILKL 86

Query: 104 RDNKLMKIPDVSIFKKLS---VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
             N+ +++     F  L+   V  ++   +  +    N    L  L              
Sbjct: 87  DYNQFLQLET-GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSL-------------- 131

Query: 161 HFHDLQILEFGSNRLRVMEN---LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNR 217
                ++L    N ++ ++      N+     L L  N++K             S+    
Sbjct: 132 -----EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-------------SICEED 173

Query: 218 LTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDL 277
           L + +G         L LS           TL +++   +   K          + +  L
Sbjct: 174 LLNFQGKH----FTLLRLSSI---------TLQDMNEYWLGWEKCGNPF---KNTSITTL 217

Query: 278 WLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKYT 328
            L+ N  +   +     A +   + ++ L N+             +   +T
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.1 bits (133), Expect = 9e-09
 Identities = 33/98 (33%), Positives = 52/98 (53%), Gaps = 7/98 (7%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             L L   +++ +D   F   T+L +L+L+ N L S+DSR+  +L  L+ L L  N I  
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-- 359

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
            A+     +  L  L+EL L  N+L  +PD  IF +L+
Sbjct: 360 RAL-GDQSFLGLPNLKELALDTNQLKSVPD-GIFDRLT 395

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  110 bits (277), Expect = 4e-27
 Identities = 63/263 (23%), Positives = 105/263 (39%), Gaps = 29/263 (11%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L +    L  L     P  L  L+++ N+LTSL      L  L   S     +     
Sbjct: 64  TTLVIPDNNLTSLP--ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLP---- 117

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
                    +GL +L +  N+L  +P   +   L    VS N++ S   L  +   L +L
Sbjct: 118 ------ALPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS---LPALPSELCKL 166

Query: 147 YVSKNEVPKMEEI-EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGL 205
           +   N   ++  +      LQ L    N+L  +  L   + L +LW   NR+  +     
Sbjct: 167 WAYNN---QLTSLPMLPSGLQELSVSDNQLASLPTL--PSELYKLWAYNNRLTSLP-ALP 220

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT-L 264
             +K++ +  NRLTS+        L+EL +S N ++ +        L  L V  N+LT L
Sbjct: 221 SGLKELIVSGNRLTSL--PVLPSELKELMVSGNRLTSLP--MLPSGLLSLSVYRNQLTRL 276

Query: 265 VDDIQNLSRLEDLWLNDNQIESL 287
            + + +LS    + L  N +   
Sbjct: 277 PESLIHLSSETTVNLEGNPLSER 299

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  104 bits (261), Expect = 5e-25
 Identities = 64/285 (22%), Positives = 111/285 (38%), Gaps = 45/285 (15%)

Query: 44  FPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
                  L++  + LT+L   +   +++  L +  N +                L  L +
Sbjct: 38  LNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLP-------ALPPELRTLEV 88

Query: 104 RDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG--------------LSNVTDTLKELYV 148
             N+L  +P       +LS+F      + +                 L  +   L+EL V
Sbjct: 89  SGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQELSV 148

Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLK 206
           S N++  +  +    +L  L   +N+L  +  L   + LQEL +  N++  +      L 
Sbjct: 149 SDNQLASLPAL--PSELCKLWAYNNQLTSLPML--PSGLQELSVSDNQLASLPTLPSEL- 203

Query: 207 CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVD 266
              K+   +NRLTS+        L+EL +S N ++ +        L  L VS N+LT + 
Sbjct: 204 --YKLWAYNNRLTSLP--ALPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLP 257

Query: 267 DIQNLSRLEDLWLNDNQIESL-ESIVEAVAGSRETLTTIYLENNP 310
                S L  L +  NQ+  L ES+         + TT+ LE NP
Sbjct: 258 M--LPSGLLSLSVYRNQLTRLPESL-----IHLSSETTVNLEGNP 295

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.6 bits (196), Expect = 1e-16
 Identities = 61/297 (20%), Positives = 103/297 (34%), Gaps = 41/297 (13%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHL-----------------S 69
             L +   QL  L     P  L EL ++ N+L SL +  S L                 S
Sbjct: 124 CKLWIFGNQLTSLP--VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLPMLPS 181

Query: 70  NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNE 129
            L++LS+  N +       +      + L +L   +N+L  +P  ++   L    VS N 
Sbjct: 182 GLQELSVSDNQLAS-----LP--TLPSELYKLWAYNNRLTSLP--ALPSGLKELIVSGNR 232

Query: 130 ITSSHGLSNVTDTLKELYVSKNEVPKMEEI-EHFHDLQILEFGSNRLRVM-ENLQNLTNL 187
           +TS   L  +   LKEL VS N   ++  +      L  L    N+L  + E+L +L++ 
Sbjct: 233 LTS---LPVLPSELKELMVSGN---RLTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSE 286

Query: 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM-----KGFEECIALEELYLSHNGISK 242
             + L  N +    L  L+ I      S  +            E  AL          ++
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

Query: 243 MEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
               +     H+     N       +  LS  E+   +      + S +  +A    
Sbjct: 347 EGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEA 403

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 23/170 (13%), Positives = 47/170 (27%), Gaps = 13/170 (7%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             L ++  +L  L     P+ L  L +  N+LT L   + HLS+   ++L  N + +   
Sbjct: 244 KELMVSGNRLTSLP--MLPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE--- 298

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFK-KLSVFDVSFNEITSSHGLSNVTDTLKE 145
                  AL  +         +++         + +                        
Sbjct: 299 ---RTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADR 355

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSN----RLRVMENLQNLTNLQELW 191
            ++   E            L   E        + ++   L  L   + L 
Sbjct: 356 WHMFGQEDNADAFSLFLDRLSETENFIKDAGFKAQISSWLAQLAEDEALR 405

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  110 bits (277), Expect = 4e-27
 Identities = 58/278 (20%), Positives = 115/278 (41%), Gaps = 22/278 (7%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTN-LTELDLTANRLTSLD----SRISHLSNLKKLSLRQN 79
            + + D +  +L  L       + +   D T N L   +      +S L  ++ +++R+ 
Sbjct: 232 GSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291

Query: 80  LIDDAAIEPISRW--DALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITS--- 132
            I    +          L  ++ + + ++K+  +P       K L   D+S N +     
Sbjct: 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYL 351

Query: 133 -SHGLSNVTDTLKELYVSKNEVPKMEEI----EHFHDLQILEFGSNRLRVM-ENLQNLTN 186
            +        +L+ L +S+N +  M++         +L  L+   N    M ++ Q    
Sbjct: 352 KNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK 411

Query: 187 LQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL 246
           ++ L L    I+VV  C  + ++ + + +N L S   F     L+ELY+S N +  +   
Sbjct: 412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLP--RLQELYISRNKLKTLPDA 469

Query: 247 STLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDN 282
           S    L V+ +S N+L  V D     L+ L+ +WL+ N
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  106 bits (267), Expect = 8e-26
 Identities = 65/311 (20%), Positives = 115/311 (36%), Gaps = 37/311 (11%)

Query: 29  LDLTSFQLHDLDSVEFPTNLTEL--------DLTANRLTSLDSRISHLSNLKKLSLRQNL 80
            +L  FQ   L   E  + + +L        D + N L  L   I  LS ++      N 
Sbjct: 206 TNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNG 265

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI-------FKKLSVFDVSFNEITS- 132
           + D           L  +E + +R   + +              +K+    V  +++   
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV 325

Query: 133 SHGLSNVTDTLKELYVSKNE-----VPKMEEIEHFHDLQILEFGSNRLRVMEN----LQN 183
               S    +L+ L +S+N      +        +  LQ L    N LR M+     L  
Sbjct: 326 PCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 184 LTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFEECI--ALEELYLSHNG 239
           L NL  L + RN    +  +    + ++ ++L S  +      + CI   LE L +S+N 
Sbjct: 386 LKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV---VKTCIPQTLEVLDVSNNN 442

Query: 240 ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
           +        L  L  L +S NKL  + D      L  + ++ NQ++S+    + +     
Sbjct: 443 LDSFS--LFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP---DGIFDRLT 497

Query: 300 TLTTIYLENNP 310
           +L  I+L  NP
Sbjct: 498 SLQKIWLHTNP 508

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 86.7 bits (215), Expect = 4e-19
 Identities = 56/332 (16%), Positives = 120/332 (36%), Gaps = 48/332 (14%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
           ++ V D  S     + S      +  LDL+ N++T +    +   +NL+ L L+ + I+ 
Sbjct: 6   ASGVCDGRSRSFTSIPS-GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITS---SHGLSN 138
             IE  + + +L  LE L L DN L  +          L   ++  N   +   +    N
Sbjct: 65  --IEGDA-FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPN 121

Query: 139 VTDTLKELYVSKN---EVPKMEEIEHFHDLQILEFGSNRLRVMEN--LQNLTNLQELWLG 193
           +T  L+ L +         +  +      L  LE  +  LR  ++  L+++ ++  L L 
Sbjct: 122 LT-NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 194 RNRIKVVNLC---GLKCIKKISLQSNRLTSMK-----GFEECIALEELYLSHNGISKM-- 243
            +    +       L  ++ + L+   L   +       E    +++L    + ++    
Sbjct: 181 LSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESF 240

Query: 244 -------EGLSTLVNLHVLDVSSNKLTLVDDIQN----------LSRLEDLWLNDNQIES 286
                    +  L  +   D + N L   +  ++             +  L +    +  
Sbjct: 241 NELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFY 300

Query: 287 LESIVEAVAGSRETLTTIYLENNPCKIFKLFC 318
             S V ++      +  I +EN+  K+F + C
Sbjct: 301 DLSTVYSLLEK---VKRITVENS--KVFLVPC 327

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.8 bits (197), Expect = 1e-16
 Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 17/183 (9%)

Query: 21  EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR---ISHLSNLKKLSLR 77
            +DLS     +    L +        +L  L L+ N L S+      +  L NL  L + 
Sbjct: 338 FLDLSEN--LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDIS 395

Query: 78  QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS-SHGL 136
           +N      +    +W     +  L L    +  +    I + L V DVS N + S S  L
Sbjct: 396 RNTFHP--MPDSCQW--PEKMRFLNLSSTGIRVVKT-CIPQTLEVLDVSNNNLDSFSLFL 450

Query: 137 SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV--MENLQNLTNLQELWLGR 194
                 L+ELY+S+N++  + +   F  L +++   N+L+         LT+LQ++WL  
Sbjct: 451 PR----LQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHT 506

Query: 195 NRI 197
           N  
Sbjct: 507 NPW 509

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  107 bits (268), Expect = 6e-26
 Identities = 58/306 (18%), Positives = 102/306 (33%), Gaps = 22/306 (7%)

Query: 21  EIDLSNTVL--DLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLR 77
           ++ L N     ++    +  L  +E    +         L   D S +  L NL     R
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 78  QNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
              +D    + I  ++ L  +    L    + ++ D S        ++   +      L 
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK 323

Query: 138 NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME----NLQNLTNLQELWLG 193
               +LK L  + N+            L+ L+   N L        +    T+L+ L L 
Sbjct: 324 --LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLS 381

Query: 194 RNRIKVV--NLCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKM--EGL 246
            N +  +  N  GL+ ++ +  Q + L  M     F     L  L +SH           
Sbjct: 382 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 441

Query: 247 STLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTT 303
           + L +L VL ++ N        D    L  L  L L+  Q+E L         S   L  
Sbjct: 442 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS---LQV 498

Query: 304 IYLENN 309
           + + +N
Sbjct: 499 LNMASN 504

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  106 bits (266), Expect = 1e-25
 Identities = 61/279 (21%), Positives = 102/279 (36%), Gaps = 26/279 (9%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLID 82
           +     LD     + DL +    TN++   L +  +  +    S+    + L L      
Sbjct: 261 EFRLAYLDYYLDDIIDLFNC--LTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFG 317

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV--- 139
                       L  L+ L    NK            L   D+S N ++     S     
Sbjct: 318 QF------PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFG 371

Query: 140 TDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVMEN---LQNLTNLQELWLGRN 195
           T +LK L +S N V  M         L+ L+F  + L+ M       +L NL  L +   
Sbjct: 372 TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 431

Query: 196 RIKVVN---LCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKMEG--LS 247
             +V       GL  ++ + +  N          F E   L  L LS   + ++     +
Sbjct: 432 HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491

Query: 248 TLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQI 284
           +L +L VL+++SN+L  V D     L+ L+ +WL+ N  
Sbjct: 492 SLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  104 bits (261), Expect = 5e-25
 Identities = 56/304 (18%), Positives = 106/304 (34%), Gaps = 35/304 (11%)

Query: 27  TVLDLTSFQLHDLDSVEF------PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL 80
             LDL+S ++  +   +       P     LDL+ N +  +         L KL+LR N 
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNF 211

Query: 81  IDDAAIEPISRWDALAGLEELIL-----RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG 135
                ++       LAGLE   L     R+   ++  D S  + L    +    +     
Sbjct: 212 DSLNVMKTCI--QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
             +    L                    ++      S  +  +++       Q L L   
Sbjct: 270 YLDDIIDL---------------FNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNC 314

Query: 196 RIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS----TLVN 251
           +        LK +K+++  SN+  +     +  +LE L LS NG+S     S       +
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 252 LHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           L  LD+S N +  +  +   L +LE L    + ++ +     +V  S   L  + + +  
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE--FSVFLSLRNLIYLDISHTH 432

Query: 311 CKIF 314
            ++ 
Sbjct: 433 TRVA 436

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  103 bits (259), Expect = 1e-24
 Identities = 58/294 (19%), Positives = 111/294 (37%), Gaps = 24/294 (8%)

Query: 35  QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNL--KKLSLRQNLIDDAAIEPISRW 92
            L   D       L  L +   RL  LD  +  + +L     ++    +    IE +  +
Sbjct: 242 NLEKFDKSALE-GLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF 300

Query: 93  DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNE 152
               G + L L + K  + P +   K L     + N+  ++    ++  +L+ L +S+N 
Sbjct: 301 SYNFGWQHLELVNCKFGQFPTLK-LKSLKRLTFTSNKGGNAFSEVDLP-SLEFLDLSRNG 358

Query: 153 VPKMEEIEHFHD----LQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVVN----LC 203
           +               L+ L+   N +  M  N   L  L+ L    + +K ++      
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 204 GLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM---EGLSTLVNLHVLDVS 258
            L+ +  + +            F    +LE L ++ N   +    +  + L NL  LD+S
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 259 SNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
             +L  +      +LS L+ L +  NQ++S+   +     S   L  I+L  NP
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS---LQKIWLHTNP 529

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 86.7 bits (215), Expect = 5e-19
 Identities = 60/302 (19%), Positives = 107/302 (35%), Gaps = 60/302 (19%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLI 81
            + N          + +     P +   LDL+ N L  L S        L+ L L +  I
Sbjct: 6   VVPNITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI 64

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
               IE  + + +L+ L  LIL  N +  +     F  LS                    
Sbjct: 65  QT--IEDGA-YQSLSHLSTLILTGNPIQSLAL-GAFSGLS-------------------- 100

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN 201
           +L++L   +              L  LE           + +L  L+EL +  N I+   
Sbjct: 101 SLQKLVAVETN------------LASLENFP--------IGHLKTLKELNVAHNLIQSFK 140

Query: 202 L----CGLKCIKKISLQSNRLTSMKGFEEC------IALEELYLSHNGISKME-GLSTLV 250
           L      L  ++ + L SN++ S+   +        +    L LS N ++ ++ G    +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200

Query: 251 NLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLE 307
            LH L + +N  +L      IQ L+ LE   L   +  +  ++ +    + E L  + +E
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 308 NN 309
             
Sbjct: 261 EF 262

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  100 bits (252), Expect = 7e-25
 Identities = 66/287 (22%), Positives = 106/287 (36%), Gaps = 78/287 (27%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L +V    P     + L  NR++ + +       NL  L L  N++  A I+  + +  L
Sbjct: 23  LQAVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVL--ARIDAAA-FTGL 79

Query: 96  AGLEELILRDN-KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP 154
           A LE+L L DN +L  +         + F          HGL      L  L++ +    
Sbjct: 80  ALLEQLDLSDNAQLRSVDP-------ATF----------HGLGR----LHTLHLDRCG-- 116

Query: 155 KMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQ 214
                     LQ L  G          + L  LQ L+L  N ++ +              
Sbjct: 117 ----------LQELGPGL--------FRGLAALQYLYLQDNALQAL-------------- 144

Query: 215 SNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQN 270
                    F +   L  L+L  N IS +       L +L  L +  N++  V     ++
Sbjct: 145 -----PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP----CKI 313
           L RL  L+L  N + +L +  EA+A  R  L  + L +NP    C+ 
Sbjct: 200 LGRLMTLYLFANNLSALPT--EALAPLR-ALQYLRLNDNPWVCDCRA 243

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =   99 bits (250), Expect = 2e-23
 Identities = 70/309 (22%), Positives = 123/309 (39%), Gaps = 36/309 (11%)

Query: 27  TVLDLTSFQLH-DLDSVEFPTNLTELDLTANRLT---SLDSRISHLSNLKKLSLRQNLID 82
             L L++  ++  +   +   +LT LDL+ N L+   +  + +   S LK L++  N +D
Sbjct: 80  ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD 139

Query: 83  DAAIEPISRWDALAGLEELILRDNKL-----MKIPDVSIFKKLSVFDVSFNEITSSHGLS 137
                 +S    L  LE L L  N +     +         +L    +S N+I+    +S
Sbjct: 140 FP--GKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVS 197

Query: 138 NVTDTLKELYVSKN----EVPKMEEIEHFHDLQILEFGSNRL--RVMENLQNLTNLQELW 191
                L+ L VS N     +P    +     LQ L+   N+L       +   T L+ L 
Sbjct: 198 RCV-NLEFLDVSSNNFSTGIP---FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 192 LGRNRIK-VVNLCGLKCIKKISLQSNRLT-----SMKGFEECIALEELYLSHNGISKM-- 243
           +  N+    +    LK ++ +SL  N+ T      + G   C  L  L LS N       
Sbjct: 254 ISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSG--ACDTLTGLDLSGNHFYGAVP 311

Query: 244 EGLSTLVNLHVLDVSSNKLT---LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET 300
               +   L  L +SSN  +    +D +  +  L+ L L+ N+      + E++     +
Sbjct: 312 PFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG--ELPESLTNLSAS 369

Query: 301 LTTIYLENN 309
           L T+ L +N
Sbjct: 370 LLTLDLSSN 378

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.9 bits (242), Expect = 2e-22
 Identities = 65/311 (20%), Positives = 112/311 (36%), Gaps = 38/311 (12%)

Query: 27  TVLDLTSFQLHDLDSVEFP-----TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           T +DL+S  L+   S         T L  L L+ + +    S     ++L  L L +N +
Sbjct: 53  TSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSL 112

Query: 82  DDAAIEPISRWDALAGLEELILRDNKL---MKIPDVSIFKKLSVFDVSFN----EITSSH 134
               +  ++   + +GL+ L +  N L    K+        L V D+S N          
Sbjct: 113 SG-PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW 171

Query: 135 GLSNVTDTLKELYVSKN----EVPKMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQE 189
            LS+    LK L +S N    +V     +    +L+ L+  SN     +  L + + LQ 
Sbjct: 172 VLSDGCGELKHLAISGNKISGDVD----VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQH 227

Query: 190 LWLGRNRIK------VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS-- 241
           L +  N++       +     L   K +++ SN+           +L+ L L+ N  +  
Sbjct: 228 LDISGNKLSGDFSRAISTCTEL---KLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGE 284

Query: 242 -KMEGLSTLVNLHVLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR 298
                      L  LD+S N     +     + S LE L L+ N       +        
Sbjct: 285 IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG--ELPMDTLLKM 342

Query: 299 ETLTTIYLENN 309
             L  + L  N
Sbjct: 343 RGLKVLDLSFN 353

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 84.6 bits (210), Expect = 3e-18
 Identities = 58/288 (20%), Positives = 108/288 (37%), Gaps = 33/288 (11%)

Query: 46  TNLTELDLTANRLT----SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
             +T +DL++  L     ++ S +  L+ L+ L L  + I+      +S +   A L  L
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHING----SVSGFKCSASLTSL 105

Query: 102 ILRDNKLM-KIPDVSIF---KKLSVFDVSFNEITSSHGLSNVTD--TLKELYVSKNE--- 152
            L  N L   +  ++       L   +VS N +     +S      +L+ L +S N    
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165

Query: 153 --VPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI--KVVNLCGLKCI 208
             V      +   +L+ L    N++    ++    NL+ L +  N     +  L     +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSAL 225

Query: 209 KKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT--L 264
           + + +  N+L+    +    C  L+ L +S N          L +L  L ++ NK T  +
Sbjct: 226 QHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEI 285

Query: 265 VDDIQ-NLSRLEDLWLNDNQIESL--ESIVEAVAGSRETLTTIYLENN 309
            D +      L  L L+ N               GS   L ++ L +N
Sbjct: 286 PDFLSGACDTLTGLDLSGNHFYGAVPPFF-----GSCSLLESLALSSN 328

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.4 bits (207), Expect = 6e-18
 Identities = 64/310 (20%), Positives = 100/310 (32%), Gaps = 55/310 (17%)

Query: 46  TNLTELDLTANRLTSL--DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
           + L  L L++N  +       +  +  LK L L  N        P S  +  A L  L L
Sbjct: 318 SLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGEL--PESLTNLSASLLTLDL 375

Query: 104 RDNKLM-KIPD---VSIFKKLSVFDVSFNEITSS--HGLSNVTDTLKELYVSKN----EV 153
             N     I      +    L    +  N  T      LSN ++ L  L++S N     +
Sbjct: 376 SSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSE-LVSLHLSFNYLSGTI 434

Query: 154 PKMEEIEHFHDLQILEFGSNRL--RVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCI 208
           P    +     L+ L+   N L   + + L  +  L+ L L  N +       L     +
Sbjct: 435 P--SSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492

Query: 209 KKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG-----LSTLVNLHVLDVSSNK 261
             ISL +NRLT    K       L  L LS+N  S   G     L    +L  LD+++N 
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS---GNIPAELGDCRSLIWLDLNTNL 549

Query: 262 LT----------------------LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
                                       I+N    ++     N +E      E +     
Sbjct: 550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQL-NRLS 608

Query: 300 TLTTIYLENN 309
           T     + + 
Sbjct: 609 TRNPCNITSR 618

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.6 bits (205), Expect = 1e-17
 Identities = 55/263 (20%), Positives = 96/263 (36%), Gaps = 34/263 (12%)

Query: 46  TNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLEELIL 103
             L  L L  N LT  + S +S+ +NL  +SL  N +       I +W   L  L  L L
Sbjct: 466 KTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG----EIPKWIGRLENLAILKL 521

Query: 104 RDNKLM-KIPDVSI--FKKLSVFDVSFNEITSS--HGLSNVTDTLKELYVSKNEVPKMEE 158
            +N     IP   +   + L   D++ N    +    +   +  +   +++  +      
Sbjct: 522 SNNSFSGNIPA-ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIA-GKRY--VY 577

Query: 159 IEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRIK---VVNLCGLKCIKKI 211
           I++    +      N L       E L  L+      +                  +  +
Sbjct: 578 IKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFL 637

Query: 212 SLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG-----LSTLVNLHVLDVSSNKLT- 263
            +  N L+    K       L  L L HN IS   G     +  L  L++LD+SSNKL  
Sbjct: 638 DMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS---GSIPDEVGDLRGLNILDLSSNKLDG 694

Query: 264 -LVDDIQNLSRLEDLWLNDNQIE 285
            +   +  L+ L ++ L++N + 
Sbjct: 695 RIPQAMSALTMLTEIDLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 60/265 (22%), Positives = 102/265 (38%), Gaps = 36/265 (13%)

Query: 45  PTNLTELDLTANRLT-SLDSRISHLSNLKKLSLRQNLIDDAAIEPI-SRWDALAGLEELI 102
              L EL L  N  T  +   +S+ S L  L L  N +       I S   +L+ L +L 
Sbjct: 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG----TIPSSLGSLSKLRDLK 448

Query: 103 LRDNKLM-KIPD-VSIFKKLSVFDVSFNEITSS--HGLSNVTDTLKELYVSKN----EVP 154
           L  N L  +IP  +   K L    + FN++T     GLSN T+ L  + +S N    E+P
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN-LNWISLSNNRLTGEIP 507

Query: 155 KMEEIEHFHDLQILEFGSNRL--RVMENLQNLTNLQELWLGRNRIKVVNLCGL--KCIKK 210
             + I    +L IL+  +N     +   L +  +L  L L  N        G     + K
Sbjct: 508 --KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN-----LFNGTIPAAMFK 560

Query: 211 IS--LQSNRLTSM--KGFEECIALEELYLSHNGIS----KMEGLSTLVNLHVLDVSSNKL 262
            S  + +N +        +     +E + + N +     + E L+ L   +  +++S   
Sbjct: 561 QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVY 620

Query: 263 T--LVDDIQNLSRLEDLWLNDNQIE 285
                    N   +  L ++ N + 
Sbjct: 621 GGHTSPTFDNNGSMMFLDMSYNMLS 645

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 48/292 (16%), Positives = 93/292 (31%), Gaps = 41/292 (14%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
           +                 R ++ +N +  +     +  A  + +       G   L LR 
Sbjct: 33  SQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALK-ATADLLEDA-TQPGRVALELRS 90

Query: 106 NKLMKIPDVSIF--KKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKN---EVPKMEEI 159
             L + PD   F    L    +    +      +      L+ L +++N    +P    I
Sbjct: 91  VPLPQFPD-QAFRLSHLQHMTIDAAGLMELPDTMQQFAG-LETLTLARNPLRALP--ASI 146

Query: 160 EHFHDLQILEFGSN-----------RLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLK 206
              + L+ L   +                    Q L NLQ L L    I+ +  ++  L+
Sbjct: 147 ASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQ 206

Query: 207 CIKKISLQSNRLTSM-KGFEECIALEELYLSHNGISKMEGL----STLVNLHVLDVSS-N 260
            +K + ++++ L+++         LEEL L     + +            L  L +   +
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLPKLEELDLRGC--TALRNYPPIFGGRAPLKRLILKDCS 264

Query: 261 KLTLV-DDIQNLSRLEDLWLNDN-QIESL-ESIVEAVAGSRETLTTIYLENN 309
            L  +  DI  L++LE L L     +  L   I             I +  +
Sbjct: 265 NLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLI-----AQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 89.2 bits (222), Expect = 2e-20
 Identities = 46/255 (18%), Positives = 88/255 (34%), Gaps = 32/255 (12%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD--AAIEPISRWDALAGLEELIL 103
                L+L +  L     +   LS+L+ +++    + +    ++        AGLE L L
Sbjct: 81  PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQ------QFAGLETLTL 134

Query: 104 RDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEH 161
             N L  +P  SI    +L    +                 L EL           E + 
Sbjct: 135 ARNPLRALPA-SIASLNRLRELSIRACP------------ELTELPEPLASTDASGEHQG 181

Query: 162 FHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQS-NR 217
             +LQ L      +R +  ++ NL NL+ L +  + +  +   +  L  ++++ L+    
Sbjct: 182 LVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTA 241

Query: 218 LTSM-KGFEECIALEELYLSH-NGISKM-EGLSTLVNLHVLDVSSNKL--TLVDDIQNLS 272
           L +    F     L+ L L   + +  +   +  L  L  LD+        L   I  L 
Sbjct: 242 LRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301

Query: 273 RLEDLWLNDNQIESL 287
               + +  +    L
Sbjct: 302 ANCIILVPPHLQAQL 316

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.8 bits (195), Expect = 8e-17
 Identities = 45/276 (16%), Positives = 100/276 (36%), Gaps = 37/276 (13%)

Query: 58  LTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIP-DVSI 116
           + S      H S  + L  + +     A+ P    D L+  +     D          + 
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGS----TALRPY--HDVLSQWQRHYNADRNRWHSAWRQAN 54

Query: 117 FKKLSVFDVSFNEITSSHG-LSNVTDT-LKELYVSKN---EVPKMEEIEHFHDLQILEFG 171
                +   +   + ++   L + T      L +      + P  ++      LQ +   
Sbjct: 55  SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFP--DQAFRLSHLQHMTID 112

Query: 172 SNRLRVM-ENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSN-----------R 217
           +  L  + + +Q    L+ L L RN ++ +  ++  L  ++++S+++             
Sbjct: 113 AAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLAS 172

Query: 218 LTSMKGFEECIALEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLT-LVDDIQNLSRLE 275
             +    +  + L+ L L   GI  +   ++ L NL  L + ++ L+ L   I +L +LE
Sbjct: 173 TDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 276 DLWLND-NQIESL-ESIVEAVAGSRETLTTIYLENN 309
           +L L     + +          G R  L  + L++ 
Sbjct: 233 ELDLRGCTALRNYPPIF-----GGRAPLKRLILKDC 263

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 48.8 bits (117), Expect = 8e-07
 Identities = 34/173 (19%), Positives = 52/173 (30%), Gaps = 39/173 (22%)

Query: 35  QLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD--AAIEPISRW 92
                   +   NL  L L    + SL + I++L NLK L +R + +     AI      
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIH----- 226

Query: 93  DALAGLEELILRD-NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKN 151
             L  LEEL LR    L   P              F               LK L +   
Sbjct: 227 -HLPKLEELDLRGCTALRNYPP------------IFGGRAP----------LKRLILKDC 263

Query: 152 ----EVPKMEEIEHFHDLQILEFGSN-RLRVM-ENLQNLTNLQELWLGRNRIK 198
                +P   +I     L+ L+      L  +   +  L     + +  +   
Sbjct: 264 SNLLTLP--LDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 91.6 bits (228), Expect = 1e-21
 Identities = 61/257 (23%), Positives = 95/257 (36%), Gaps = 54/257 (21%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
              +    P +   LDL+ N L  L S        L+ L L +  I    IE    + +L
Sbjct: 19  FYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEI--QTIED-GAYQSL 75

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITS-SHGLSNVTDTLKELYVSKN 151
           + L  LIL  N +  +  +  F  LS           + S  +       TLKEL V+ N
Sbjct: 76  SHLSTLILTGNPIQSLA-LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 152 EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKI 211
            +   +  E+F                    NLTNL+ L L  N+I+             
Sbjct: 135 LIQSFKLPEYF-------------------SNLTNLEHLDLSSNKIQ------------- 162

Query: 212 SLQSN---RLTSMKGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLVDD 267
           S+       L  M      +    L LS N ++ ++ G    + L  L + +N+L  V D
Sbjct: 163 SIYCTDLRVLHQMP-----LLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPD 217

Query: 268 --IQNLSRLEDLWLNDN 282
                L+ L+ +WL+ N
Sbjct: 218 GIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 80.8 bits (200), Expect = 8e-18
 Identities = 49/186 (26%), Positives = 85/186 (45%), Gaps = 23/186 (12%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
            VLDL+  ++  ++   +   ++L+ L LT N + SL     S LS+L+KL   +  +  
Sbjct: 55  QVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-- 112

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS---VFDVSFNEITSSH-----G 135
           A++E       L  L+EL +  N +        F  L+     D+S N+I S +      
Sbjct: 113 ASLENFP-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEH--FHD--LQILEFGSNRLRVMEN--LQNLTNLQE 189
           L  +      L +S N    M  I+   F +  L+ L   +N+L+ + +     LT+LQ+
Sbjct: 172 LHQMPLLNLSLDLSLN---PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQK 228

Query: 190 LWLGRN 195
           +WL  N
Sbjct: 229 IWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 61.9 bits (151), Expect = 3e-11
 Identities = 28/153 (18%), Positives = 54/153 (35%), Gaps = 29/153 (18%)

Query: 164 DLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRL 218
             + L+   N LR + +    +   LQ L L R  I+ +       L  +  + L  N +
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 219 TSMKG--FEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED 276
            S+    F    +L++L      ++ +E                       I +L  L++
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFP--------------------IGHLKTLKE 128

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
           L +  N I+S +        +   L  + L +N
Sbjct: 129 LNVAHNLIQSFKL--PEYFSNLTNLEHLDLSSN 159

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 93.5 bits (232), Expect = 3e-21
 Identities = 45/248 (18%), Positives = 101/248 (40%), Gaps = 26/248 (10%)

Query: 50  ELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKL 108
             +   N ++       S     +K +L     ++A          +    EL L    L
Sbjct: 14  SQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNL 71

Query: 109 MKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEI-EHFHDLQI 167
             +PD ++  +++V +++ N + S   L  +  +L+ L    N   ++  + E    L+ 
Sbjct: 72  SSLPD-NLPPQITVLEITQNALIS---LPELPASLEYLDACDN---RLSTLPELPASLKH 124

Query: 168 LEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFE 225
           L+  +N+L ++  L     L+ +    N++ ++      L+    +S+++N+LT +   E
Sbjct: 125 LDVDNNQLTMLPEL--PALLEYINADNNQLTMLPELPTSLE---VLSVRNNQLTFL--PE 177

Query: 226 ECIALEELYLSHNGISKM-EGLSTLVNL----HVLDVSSNKLT-LVDDIQNLSRLEDLWL 279
              +LE L +S N +  +        +            N++T + ++I +L     + L
Sbjct: 178 LPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIIL 237

Query: 280 NDNQIESL 287
            DN + S 
Sbjct: 238 EDNPLSSR 245

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 78.1 bits (192), Expect = 4e-16
 Identities = 46/204 (22%), Positives = 80/204 (39%), Gaps = 31/204 (15%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           + L L    L  L     P  +T L++T N L SL       ++L+ L    N +     
Sbjct: 62  SELQLNRLNLSSLPD-NLPPQITVLEITQNALISLPELP---ASLEYLDACDNRLS---- 113

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
              +  +  A L+ L + +N+L  +P+  +   L   +   N++T    L  +  +L+ L
Sbjct: 114 ---TLPELPASLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTM---LPELPTSLEVL 165

Query: 147 YVSKN---EVPKMEEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQE----LWLGRNRIK 198
            V  N    +P     E    L+ L+  +N L  +        + +E         NRI 
Sbjct: 166 SVRNNQLTFLP-----ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 199 VV--NLCGLKCIKKISLQSNRLTS 220
            +  N+  L     I L+ N L+S
Sbjct: 221 HIPENILSLDPTCTIILEDNPLSS 244

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 14/179 (7%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKK----LSLRQNLID 82
            VL + + QL  L   E P +L  LD++ N L SL +      + ++       R+N I 
Sbjct: 163 EVLSVRNNQLTFLP--ELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRIT 220

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT 142
                 +S    L     +IL DN L      S+ ++ +  D     I  S         
Sbjct: 221 HIPENILS----LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

Query: 143 LKELYVSKN----EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
            + L  +      E  + +  + +H  +  E  +     ++ L +  + +     R ++
Sbjct: 277 HRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFREQV 335

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 91.1 bits (226), Expect = 2e-20
 Identities = 61/313 (19%), Positives = 113/313 (36%), Gaps = 29/313 (9%)

Query: 24  LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTAN-----RLTSLDSRISHLSNLKKLSLRQ 78
           L       + F +    SV    +L   ++  N     RL +  S ++    L  ++L+ 
Sbjct: 199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQH 258

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF-------KKLSVFDVSFNEIT 131
                     + ++     +E L + +  + +  D   F       K L +  V      
Sbjct: 259 IETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFL 318

Query: 132 -SSHGLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSNRLRVME--NLQNLTN 186
            S   L +V   +    +S ++ P   M           L F  N            L  
Sbjct: 319 FSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKR 378

Query: 187 LQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMKGFEEC---IALEELYLSHN 238
           LQ L L RN +K           +  ++ + +  N L S      C    ++  L LS N
Sbjct: 379 LQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSN 438

Query: 239 GISKMEGLSTLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGS 297
            ++          + VLD+ +N++  +  D+ +L  L++L +  NQ   L+S+ + V   
Sbjct: 439 MLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ---LKSVPDGVFDR 495

Query: 298 RETLTTIYLENNP 310
             +L  I+L +NP
Sbjct: 496 LTSLQYIWLHDNP 508

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 49/318 (15%), Positives = 101/318 (31%), Gaps = 44/318 (13%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             L L+   + +L   +    + L  L L+ NR+ SLD  +     +L+ L +  N + +
Sbjct: 55  KALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN 114

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSH--GLSN 138
                IS    +A L  L L  N    +P    F    KL+   +S  +        +++
Sbjct: 115 -----IS-CCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAH 168

Query: 139 VTDTLKELYVSKNEVPKMEE---IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
           +  +   L +    +   E          +  L F  N L  ++   ++  L  L L   
Sbjct: 169 LHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 196 RIKVVNLCGLKC---------------IKKISLQSNRLTSMKGFEECIALEELYLSHNGI 240
           ++   N   L                 ++ I         +  F     +E L + +  I
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTI 288

Query: 241 SKMEGLS-------TLVNLHVLDVSSNKLTLVDDI--QNLSRLEDLWLNDNQIESLESIV 291
           ++             L +L +  V +       +      + +    L+ +    +  + 
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 292 EAVAGSRETLTTIYLENN 309
                S  + T +    N
Sbjct: 349 P---PSPSSFTFLNFTQN 363

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 69.5 bits (170), Expect = 2e-13
 Identities = 52/315 (16%), Positives = 96/315 (30%), Gaps = 32/315 (10%)

Query: 27  TVLDLTSFQLHDL-DSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDD 83
             LDL+      L    EF   T LT L L+A +   LD       +L  + L       
Sbjct: 124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSH--------- 134
              E  S       +  L+   N L  +        L    +S  ++   +         
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 135 ----GLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN------- 183
               G + +  TL+ +  +     K+ +      ++ L   +  +    + +        
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 184 LTNLQELWLGRNRIK-----VVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHN 238
           L +L    +           + ++     IK +S+       M       +   L  + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 239 GISKME--GLSTLVNLHVLDVSSNKLTLVDDI-QNLSRLEDLWLNDNQIESLESIV-EAV 294
             +     G STL  L  L +  N L     +      +  L   D  + SL S   +  
Sbjct: 364 VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

Query: 295 AGSRETLTTIYLENN 309
               E++  + L +N
Sbjct: 424 CAWAESILVLNLSSN 438

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 64.9 bits (158), Expect = 8e-12
 Identities = 54/313 (17%), Positives = 96/313 (30%), Gaps = 50/313 (15%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L  V  + P     L L+ N ++ L    IS LS L+ L L  N I   ++     +   
Sbjct: 43  LTHVPKDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRI--RSL-DFHVFLFN 99

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155
             LE L +  N+L  I        L   D+SFN+                       +P 
Sbjct: 100 QDLEYLDVSHNRLQNISC-CPMASLRHLDLSFNDFDV--------------------LPV 138

Query: 156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN-------RIKVVNLCGLKCI 208
            +E  +   L  L   + + R   +L  + +L    +  +         +  +L      
Sbjct: 139 CKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTT 197

Query: 209 K-KISLQSNRLTSMKGFEECIALEELYLS------------HNGISKMEGLSTLVNLHVL 255
              +    N L S++      AL  L LS               +S++    TL+N+ + 
Sbjct: 198 VLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ 257

Query: 256 DVSSNKLTLVDDIQNL--SRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI 313
            + +     V   Q      +E L + +  I       E         + +         
Sbjct: 258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF 317

Query: 314 FKLFCYPQTNFPK 326
                   + F +
Sbjct: 318 LFSKEALYSVFAE 330

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 3/90 (3%)

Query: 17  DQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSL 76
           D+      S  VL+L+S  L        P  +  LDL  NR+ S+   ++HL  L++L++
Sbjct: 421 DRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNV 480

Query: 77  RQNLIDDAAIEPISRWDALAGLEELILRDN 106
             N +      P   +D L  L+ + L DN
Sbjct: 481 ASNQLKSV---PDGVFDRLTSLQYIWLHDN 507

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 90.3 bits (224), Expect = 2e-20
 Identities = 62/311 (19%), Positives = 122/311 (39%), Gaps = 30/311 (9%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLID 82
              + +LD++   + +L+       L +     +   S+ +++     L  L+L      
Sbjct: 176 KEFHFILDVSVKTVANLELSNIKCVLEDNKC--SYFLSILAKLQTNPKLSNLTLNNIETT 233

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF-------KKLSVFDVSFNEITSS-- 133
             +   I +      +    + + KL    D   F       K LS+  V  +       
Sbjct: 234 WNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQS 293

Query: 134 ---HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQ 188
                 SN+   +K   VS   +  M           L+F +N L   V EN  +LT L+
Sbjct: 294 YIYEIFSNMN--IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELE 351

Query: 189 ELWLGRNRIKVVNLC-----GLKCIKKISLQSNRLTSMKGFEEC---IALEELYLSHNGI 240
            L L  N++K ++        +K ++++ +  N ++  +   +C    +L  L +S N +
Sbjct: 352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNIL 411

Query: 241 SKMEGLSTLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE 299
           +          + VLD+ SNK+  +   +  L  L++L +  NQ   L+S+ + +     
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ---LKSVPDGIFDRLT 468

Query: 300 TLTTIYLENNP 310
           +L  I+L  NP
Sbjct: 469 SLQKIWLHTNP 479

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 70.7 bits (173), Expect = 9e-14
 Identities = 43/320 (13%), Positives = 94/320 (29%), Gaps = 46/320 (14%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDA 84
            +L ++  ++  LD   F     L  LDL+ N+L  +        NLK L L  N  D  
Sbjct: 48  RILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFNAFDA- 104

Query: 85  AIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLK 144
            +     +  ++ L+ L L    L K   V     L++  V    +  ++G     + L+
Sbjct: 105 -LPICKEFGNMSQLKFLGLSTTHLEKS-SVLPIAHLNISKVLLV-LGETYGEKEDPEGLQ 161

Query: 145 ELYVSKNEV--PKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNL 202
           +       +  P  +E     D+ +    +  L  ++ +              +++    
Sbjct: 162 DFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPK 221

Query: 203 CGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLST-------------- 248
                +  I    N    +        +    +S+  +                      
Sbjct: 222 LSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIH 281

Query: 249 -----------------LVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLES 289
                              N+++ + + +   +V       +S    L  ++N +     
Sbjct: 282 QVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVF 341

Query: 290 IVEAVAGSRETLTTIYLENN 309
                      L T+ L+ N
Sbjct: 342 ENCGHLTE---LETLILQMN 358

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.7 bits (155), Expect = 2e-11
 Identities = 30/186 (16%), Positives = 66/186 (35%), Gaps = 13/186 (6%)

Query: 137 SNVTDTLKELYVSKNEVPKMEEIEHFHD---LQILEFGSNRLRVMEN--LQNLTNLQELW 191
            +++     L +S+N + ++           L+IL    NR++ ++    +    L+ L 
Sbjct: 17  KDLSQKTTILNISQNYISELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLD 75

Query: 192 LGRNRIKVVNLCGLKCIKKISLQSNRLTSMKG---FEECIALEELYLSHNGISK--MEGL 246
           L  N++  ++      +K + L  N   ++     F     L+ L LS   + K  +  +
Sbjct: 76  LSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 247 STLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE--SLESIVEAVAGSRETLTTI 304
           + L    VL V        +D + L       L+           I++    +   L   
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELS 195

Query: 305 YLENNP 310
            ++   
Sbjct: 196 NIKCVL 201

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 62.6 bits (152), Expect = 4e-11
 Identities = 50/286 (17%), Positives = 92/286 (32%), Gaps = 52/286 (18%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
           S  ++D +   L  +   +     T L+++ N ++ L +  I  LS L+ L +  N I  
Sbjct: 1   SEFLVDRSKNGLIHVPK-DLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRI-- 57

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
             ++  S +     LE L L  NKL+KI                      H   N    L
Sbjct: 58  QYLDI-SVFKFNQELEYLDLSHNKLVKIS--------------------CHPTVN----L 92

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLC 203
           K L +S N    +   + F                    N++ L+ L L    ++  ++ 
Sbjct: 93  KHLDLSFNAFDALPICKEF-------------------GNMSQLKFLGLSTTHLEKSSVL 133

Query: 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263
            +  +    +      +    E+   L++       I       T    H +   S K  
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIV----FPTNKEFHFILDVSVKTV 189

Query: 264 LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
              ++ N+  + +       +  L  +      S  TL  I    N
Sbjct: 190 ANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 88.3 bits (219), Expect = 5e-20
 Identities = 53/258 (20%), Positives = 90/258 (34%), Gaps = 33/258 (12%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
           SN V      ++ ++ S + P N  EL     +L  +     S   +L+K+ + QN + +
Sbjct: 10  SNRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 84  AAIEPISRWDALAGLEEL----ILRDNKLMKIPDVSIFK---KLSVFDVSFNEITS-SHG 135
             IE     D  + L +L    I + N L+ I     F+    L    +S   I      
Sbjct: 69  -VIEA----DVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPNLQYLLISNTGIKHLPDV 122

Query: 136 LSNVTDTLKELYVSKNEVPKMEEIEH--FHDL----QILEFGSNRLR-VMENLQNLTNLQ 188
               +     L +  N    +  IE   F  L     IL    N ++ +  +  N T L 
Sbjct: 123 HKIHSLQKVLLDIQDN--INIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLD 180

Query: 189 EL-WLGRNRIKVVN---LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK 242
           EL     N ++ +      G      + +   R+ S+   G E    L      +    K
Sbjct: 181 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL--KK 238

Query: 243 MEGLSTLVNLHVLDVSSN 260
           +  L  LV L    ++  
Sbjct: 239 LPTLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.2 bits (177), Expect = 2e-14
 Identities = 40/210 (19%), Positives = 83/210 (39%), Gaps = 21/210 (10%)

Query: 99  EELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPKM 156
              + +++K+ +IP   + +          ++        S   D L+++ +S+N+V ++
Sbjct: 12  RVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGD-LEKIEISQNDVLEV 69

Query: 157 EEIEHFHDLQILEF----GSNRLRVMEN--LQNLTNLQELWLGRNRIKVV---NLCGLKC 207
            E + F +L  L       +N L  +     QNL NLQ L +    IK +   +      
Sbjct: 70  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 129

Query: 208 IKKISLQSN-RLTSMKG--FEECIA-LEELYLSHNGISKMEG--LSTLVNLHVLDVSSNK 261
              + +Q N  + +++   F         L+L+ NGI ++     +      +    +N 
Sbjct: 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNN 189

Query: 262 LTLVDD--IQNLSRLEDLWLNDNQIESLES 289
           L  + +      S    L ++  +I SL S
Sbjct: 190 LEELPNDVFHGASGPVILDISRTRIHSLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.7 bits (142), Expect = 6e-10
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 25/165 (15%)

Query: 46  TNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL----EE 100
            NL  L ++   +  L D    H      L ++ N+     I  I R ++  GL      
Sbjct: 104 PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI----NIHTIER-NSFVGLSFESVI 158

Query: 101 LILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSKNE 152
           L L  N + +I + S F   +   +     N +         G S        L +S+  
Sbjct: 159 LWLNKNGIQEIHN-SAFNGTQLDELNLSDNNNLEELPNDVFHGASG----PVILDISRTR 213

Query: 153 VPKMEEIEHFHDLQILEF-GSNRLRVMENLQNLTNLQELWLGRNR 196
           +  +       +L+ L    +  L+ +  L+ L  L E  L    
Sbjct: 214 IHSLPS-YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.7 bits (142), Expect = 6e-10
 Identities = 26/137 (18%), Positives = 52/137 (37%), Gaps = 14/137 (10%)

Query: 185 TNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG---FEECIALEELYLSH- 237
            N  EL     +++V+      G   ++KI +  N +  +     F     L E+ +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 238 NGISKMEG--LSTLVNLHVLDVSSNKLTLVDDI--QNLSRLEDLWLNDN-QIESLESIVE 292
           N +  +       L NL  L +S+  +  + D+   +  +   L + DN  I ++E    
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIER--N 147

Query: 293 AVAGSRETLTTIYLENN 309
           +  G       ++L  N
Sbjct: 148 SFVGLSFESVILWLNKN 164

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 87.6 bits (217), Expect = 1e-19
 Identities = 42/174 (24%), Positives = 73/174 (41%), Gaps = 22/174 (12%)

Query: 164 DLQILEFGSNRLRVMEN---LQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNR 217
              +L+   N L  +        LTNL  L L  N +  ++      +  ++ + L SN 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99

Query: 218 LTSMKG--FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV-----DDI 268
           L ++    F +  ALE L L +N I  ++      +  L  L +S N+++        D 
Sbjct: 100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 269 QNLSRLEDLWLNDNQIESLESIVEAVAG-SRETLTTIYLENNP----CKIFKLF 317
             L +L  L L+ N+++ L      +          +YL NNP    CK+++LF
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPL--TDLQKLPAWVKNGLYLHNNPLECDCKLYQLF 211

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 73.0 bits (179), Expect = 1e-14
 Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 56/207 (27%)

Query: 44  FPTNLTELDLTANRLTSLDSRI--SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
            P+    LDL+ N L+ L +    + L+NL  L L  N +    I   + +  +  L  L
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL--NFISSEA-FVPVPNLRYL 93

Query: 102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEH 161
            L  N L  + +        +F            L      L+ L +  N          
Sbjct: 94  DLSSNHLHTLDE-------FLFS----------DLQA----LEVLLLYNNH--------- 123

Query: 162 FHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV------NLCGLKCIKKISLQS 215
              + +++  +         +++  LQ+L+L +N+I         +   L  +  + L S
Sbjct: 124 ---IVVVDRNA--------FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS 172

Query: 216 NRLTSM--KGFEECIAL--EELYLSHN 238
           N+L  +     ++  A     LYL +N
Sbjct: 173 NKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.1 bits (143), Expect = 4e-10
 Identities = 35/103 (33%), Positives = 47/103 (45%), Gaps = 5/103 (4%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
            + N   LDL+S  LH LD   F     L  L L  N +  +D      ++ L+KL L Q
Sbjct: 86  PVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQ 145

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
           N I    +E I   + L  L  L L  NKL K+P  +  +KL 
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL-TDLQKLP 187

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 84.8 bits (210), Expect = 4e-19
 Identities = 40/186 (21%), Positives = 72/186 (38%), Gaps = 18/186 (9%)

Query: 142 TLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKV 199
               L++S+N +       +  +  L  L      L  ++    L  L  L L  N+++ 
Sbjct: 32  DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS 91

Query: 200 V--NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKMEG--LSTLVNLH 253
           +      L  +  + +  NRLTS+          L+ELYL  N +  +    L+    L 
Sbjct: 92  LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE 151

Query: 254 VLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP- 310
            L +++N LT +    +  L  L+ L L +N + +    +         L   +L  NP 
Sbjct: 152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT----IPKGFFGSHLLPFAFLHGNPW 207

Query: 311 ---CKI 313
              C+I
Sbjct: 208 LCNCEI 213

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 3e-14
 Identities = 41/192 (21%), Positives = 61/192 (31%), Gaps = 46/192 (23%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
           T L+L   +L  L        L  LDL+ N+L SL      L  L  L +  N +   ++
Sbjct: 58  TQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL--TSL 115

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
                   L  L+EL L+ N+L  +P         +                    L++L
Sbjct: 116 PL-GALRGLGELQELYLKGNELKTLPP-------GLLT----------PTPK----LEKL 153

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCG 204
            ++ N             L  L  G         L  L NL  L L  N +  +     G
Sbjct: 154 SLANNN------------LTELPAGL--------LNGLENLDTLLLQENSLYTIPKGFFG 193

Query: 205 LKCIKKISLQSN 216
              +    L  N
Sbjct: 194 SHLLPFAFLHGN 205

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 84.6 bits (209), Expect = 7e-19
 Identities = 52/288 (18%), Positives = 96/288 (33%), Gaps = 32/288 (11%)

Query: 32  TSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQ-----NLIDDAAI 86
           ++F       VE       L+    R+ +          +K LSL++       I    +
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIF----KKLSVFDVSFNEITS-----SHGLS 137
               R   ++GL+EL L + ++       +       L++ ++      +     +    
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 138 NVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVMENLQN------LTNLQE 189
            +   LK L +++        E++  F  L  L+   N       L +         LQ 
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQV 205

Query: 190 LWLGRNRIKVVN------LCGLKCIKKISLQSNRLTSMKGFEECI---ALEELYLSHNGI 240
           L L    ++  +            ++ + L  N L    G   C     L  L LS  G+
Sbjct: 206 LALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL 265

Query: 241 SKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLE 288
            ++        L VLD+S N+L        L ++ +L L  N     E
Sbjct: 266 KQVPK-GLPAKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLDSE 312

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 2e-12
 Identities = 51/263 (19%), Positives = 83/263 (31%), Gaps = 23/263 (8%)

Query: 2   DMDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSL 61
           D + +     +         + +      + S  L     V   + L EL L    +T  
Sbjct: 53  DTEADLGQFTDIIKSLSLKRLTVRA--ARIPSRILFGALRVLGISGLQELTLENLEVTGT 110

Query: 62  DSR---ISHLSNLKKLSLRQNLI--DDAAIEPISRWDALAGLEELILRDNKLMKIPD--V 114
                  +   +L  L+LR       DA +  + +W    GL+ L +     +      V
Sbjct: 111 APPPLLEATGPDLNILNLRNVSWATRDAWLAELQQW-LKPGLKVLSIAQAHSLNFSCEQV 169

Query: 115 SIFKKLSVFDVSFNEITSSHGLSNVT-----DTLKELYVSKNEVPKMEEI-----EHFHD 164
            +F  LS  D+S N      GL +        TL+ L +    +     +          
Sbjct: 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQ 229

Query: 165 LQILEFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM 221
           LQ L+   N LR      +    + L  L L    +K V       +  + L  NRL   
Sbjct: 230 LQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRN 289

Query: 222 KGFEECIALEELYLSHNGISKME 244
              +E   +  L L  N     E
Sbjct: 290 PSPDELPQVGNLSLKGNPFLDSE 312

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 80.1 bits (198), Expect = 3e-18
 Identities = 26/148 (17%), Positives = 55/148 (37%), Gaps = 26/148 (17%)

Query: 167 ILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGF-E 225
           +++  +  +       N    +EL                      L+  ++  ++    
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDREL---------------------DLRGYKIPVIENLGA 39

Query: 226 ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDI--QNLSRLEDLWLNDNQ 283
                + +  S N I K++G   L  L  L V++N++  + +   Q L  L +L L +N 
Sbjct: 40  TLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS 99

Query: 284 IESLESIVEAVAGSRETLTTIYLENNPC 311
           +  L  +      S ++LT + +  NP 
Sbjct: 100 LVELGDL--DPLASLKSLTYLCILRNPV 125

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 61.2 bits (149), Expect = 1e-11
 Identities = 29/162 (17%), Positives = 54/162 (33%), Gaps = 27/162 (16%)

Query: 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF 162
           L    + +    +   +    D+   +I     L    D    +  S NE+ K++     
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63

Query: 163 HDLQILEFGSNRLRVMEN--LQNLTNLQELWLGRNRIKVVN-LCGLKCIKKISLQSNRLT 219
             L+ L   +NR+  +     Q L +L EL L  N +  +  L  L  +K          
Sbjct: 64  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKS--------- 114

Query: 220 SMKGFEECIALEELYLSHNGISKMEG-----LSTLVNLHVLD 256
                     L  L +  N ++  +      +  +  + VLD
Sbjct: 115 ----------LTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 26/164 (15%), Positives = 60/164 (36%), Gaps = 23/164 (14%)

Query: 28  VLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIE 87
           ++ LT+  +             ELDL   ++  +++  + L     +    N      I 
Sbjct: 1   MVKLTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNE-----IR 55

Query: 88  PISRWDALAGLEELILRDNKLMKIPDVSI--FKKLSVFDVSFNEITSSHGLSNVTD--TL 143
            +  +  L  L+ L++ +N++ +I +        L+   ++ N +     L  +    +L
Sbjct: 56  KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSL 115

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
             L + +N V      +H+           RL V+  +  +  L
Sbjct: 116 TYLCILRNPV---TNKKHY-----------RLYVIYKVPQVRVL 145

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 82.5 bits (204), Expect = 7e-18
 Identities = 55/325 (16%), Positives = 106/325 (32%), Gaps = 80/325 (24%)

Query: 48  LTELDLTANRLTSLDSR-----ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG---LE 99
           +    L  + +T+ D +     +    ++K++ L  N I   A   +S  + +A    LE
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLS--ENIASKKDLE 63

Query: 100 ELILRDNKLMKIPDVSI------------FKKLSVFDVSFNEITS------SHGLSNVTD 141
                D    ++ D                 KL    +S N             LS  T 
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHT- 122

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL-------RVMENLQNLTNLQELWLGR 194
            L+ LY+  N               +      ++        V +  +N   L+ +  GR
Sbjct: 123 PLEHLYLHNN--------------GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGR 168

Query: 195 NRIKVV-------NLCGLKCIKKISLQSNRLTS-------MKGFEECIALEELYLSHNGI 240
           NR++              + +  + +  N +         ++G   C  L+ L L  N  
Sbjct: 169 NRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228

Query: 241 SKM------EGLSTLVNLHVLDVSSNKLT------LVDDIQNLS--RLEDLWLNDNQI-- 284
           + +        L +  NL  L ++   L+      +VD    L    L+ L L  N+I  
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 285 ESLESIVEAVAGSRETLTTIYLENN 309
           +++ ++   +      L  + L  N
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGN 313

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 7e-12
 Identities = 46/288 (15%), Positives = 89/288 (30%), Gaps = 65/288 (22%)

Query: 46  TNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE 100
             L  + L+ N         L   +S  + L+ L L  N +   A   I+R      L+E
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR-----ALQE 148

Query: 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITS------SHGLSNVTDTLKELYVSKN--- 151
           L +                L       N + +      +    +    L  + + +N   
Sbjct: 149 LAVNKKAKNA-------PPLRSIICGRNRLENGSMKEWAKTFQSHR-LLHTVKMVQNGIR 200

Query: 152 ----EVPKMEEIEHFHDLQILEFGSNRLRVM------ENLQNLTNLQELWLGRNRIKVVN 201
               E   +E + +  +L++L+   N    +        L++  NL+EL L    +    
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR- 259

Query: 202 LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNK 261
             G   +   +                 L+ L L +N I   + + TL  +         
Sbjct: 260 --GAAAVVD-AFSKLENIG---------LQTLRLQYNEIEL-DAVRTLKTVID------- 299

Query: 262 LTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN 309
                  + +  L  L LN N+    + +V+ +     T     L+  
Sbjct: 300 -------EKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 80.0 bits (198), Expect = 7e-17
 Identities = 59/341 (17%), Positives = 114/341 (33%), Gaps = 77/341 (22%)

Query: 27  TVLDLTSFQLHD------LDSVEFP-TNLTELDLTANRLTSLDSR-----ISHLSNLKKL 74
             L L+   L D       + +  P   L +L L    L++         +    + K+L
Sbjct: 116 QELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKEL 175

Query: 75  SLRQNLIDDAAIEPISRWDAL----AGLEELILRDNKLMKIPDVSIF------KKLSVFD 124
           ++  N I++A +  +     L      LE L L    +       +         L    
Sbjct: 176 TVSNNDINEAGVRVLC--QGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA 233

Query: 125 VSFNEITS------SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM 178
           +  N++          GL + +  L+ L++ +                I   G   L   
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC--------------GITAKGCGDL--C 277

Query: 179 ENLQNLTNLQELWLGRNRIK---VVNLC-GLKC----IKKISLQSNRLTSM------KGF 224
             L+   +L+EL L  N +       LC  L      ++ + ++S   T+          
Sbjct: 278 RVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVL 337

Query: 225 EECIALEELYLSHNGISKMEGLSTLV--------NLHVLDVSSNKLT------LVDDIQN 270
            +   L EL +S+N +    G+  L          L VL ++   ++      L   +  
Sbjct: 338 AQNRFLLELQISNNRLED-AGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLA 396

Query: 271 LSRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTIYLENN 309
              L +L L++N +    +  +VE+V      L  + L + 
Sbjct: 397 NHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 59/353 (16%), Positives = 114/353 (32%), Gaps = 71/353 (20%)

Query: 27  TVLDLTSFQLHDLDSVEFP---TNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQ 78
             LD+   +L D    E          + L    LT      + S +     L +L+LR 
Sbjct: 6   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 65

Query: 79  NLIDDAAIEPISRWDALA----GLEELILRDNKLMKIPDVSIF------KKLSVFDVSFN 128
           N + D  +  +     L      +++L L++  L       +         L    +S N
Sbjct: 66  NELGDVGVHCVL--QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 129 EITSS------HGLSNVTDTLKELYVSKNEVPKM------EEIEHFHDLQILEFGSNRL- 175
            +  +       GL +    L++L +    +           +    D + L   +N + 
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN 183

Query: 176 -RVMENL-----QNLTNLQELWLGRNRIKVVN-------LCGLKCIKKISLQSNRLTSMK 222
              +  L      +   L+ L L    +   N       +     +++++L SN+L    
Sbjct: 184 EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD-V 242

Query: 223 GFEE--------CIALEELYLSHNGISK------MEGLSTLVNLHVLDVSSNKLT----- 263
           G  E           L  L++   GI+          L    +L  L ++ N+L      
Sbjct: 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGAR 302

Query: 264 -LVDDIQN-LSRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTIYLENNPCK 312
            L + +     +LE LW+                +A +R  L  + + NN  +
Sbjct: 303 LLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNR-FLLELQISNNRLE 354

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 74.2 bits (183), Expect = 5e-15
 Identities = 57/298 (19%), Positives = 106/298 (35%), Gaps = 68/298 (22%)

Query: 46  TNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG---LEE 100
            ++  LD+    L+       +  L   + + L    + +A  + IS   AL     L E
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISS--ALRVNPALAE 60

Query: 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
           L LR N+L               DV  + +    GL   +  +++L +            
Sbjct: 61  LNLRSNELG--------------DVGVHCV--LQGLQTPSCKIQKLSLQNC--------- 95

Query: 161 HFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK---VVNLC-GLKC----IKKIS 212
                 +   G   L     L+ L  LQEL L  N +    +  LC GL      ++K+ 
Sbjct: 96  -----CLTGAGCGVLSST--LRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 213 LQSNRLTSM------KGFEECIALEELYLSHNGISK------MEGL-STLVNLHVLDVSS 259
           L+   L++                +EL +S+N I++       +GL  +   L  L + S
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLES 208

Query: 260 NKLT------LVDDIQNLSRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTIYLENN 309
             +T      L   + + + L +L L  N++    +  +   +      L T+++   
Sbjct: 209 CGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 61/311 (19%), Positives = 104/311 (33%), Gaps = 72/311 (23%)

Query: 46  TNLTELDLTANRLTSLDSRISHLS--------NLKKLSLRQNLIDDAAIEPISRWDALAG 97
            +  EL ++ N +   ++ +  L          L+ L L    +       +     +A 
Sbjct: 170 PDFKELTVSNNDIN--EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG--IVAS 225

Query: 98  ---LEELILRDNKLMKIPDVSIF-------KKLSVFDVSFNEITS------SHGLSNVTD 141
              L EL L  NKL  +    +         +L    +    IT+         L     
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE- 284

Query: 142 TLKELYVSKNEVPKMEEIEHFHD--------LQILEFGSNRLRVM------ENLQNLTNL 187
           +LKEL ++ NE+   E      +        L+ L   S              L     L
Sbjct: 285 SLKELSLAGNEL-GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFL 343

Query: 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM---- 243
            EL +  NR++     G++ + +   Q               L  L+L+   +S      
Sbjct: 344 LELQISNNRLEDA---GVRELCQGLGQPGS-----------VLRVLWLADCDVSDSSCSS 389

Query: 244 --EGLSTLVNLHVLDVSSNKLT------LVDDI-QNLSRLEDLWLNDNQI-ESLESIVEA 293
               L    +L  LD+S+N L       LV+ + Q    LE L L D    E +E  ++A
Sbjct: 390 LAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA 449

Query: 294 VAGSRETLTTI 304
           +   + +L  I
Sbjct: 450 LEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 27/158 (17%), Positives = 50/158 (31%), Gaps = 36/158 (22%)

Query: 27  TVLDLTSFQLHD------LDSVEFP-TNLTELDLTANRLTS-----LDSRISHLSNLKKL 74
             L L   +L D       +++  P   L  L + +   T+       S ++    L +L
Sbjct: 287 KELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLEL 346

Query: 75  SLRQNLIDDAAIEPISRWDALA----GLEELILRDNKLMKIPDVSIF---------KKLS 121
            +  N ++DA +  +     L      L  L L D     + D S             L 
Sbjct: 347 QISNNRLEDAGVRELC--QGLGQPGSVLRVLWLADC---DVSDSSCSSLAATLLANHSLR 401

Query: 122 VFDVSFNEITSS------HGLSNVTDTLKELYVSKNEV 153
             D+S N +  +        +      L++L +     
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 439

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 76.6 bits (189), Expect = 3e-16
 Identities = 64/220 (29%), Positives = 88/220 (40%), Gaps = 52/220 (23%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             LDL S +L  L S  F   T L  L L  N+L +L + I   L NL+ L +  N +  
Sbjct: 40  KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKL-- 97

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
            A+ PI  +D L  L EL L  N+L  +P         VFD           L+     L
Sbjct: 98  QAL-PIGVFDQLVNLAELRLDRNQLKSLPP-------RVFD----------SLTK----L 135

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLC 203
             L +  NE            LQ L  G            LT+L+EL L  N++K V   
Sbjct: 136 TYLSLGYNE------------LQSLPKGV--------FDKLTSLKELRLYNNQLKRVPEG 175

Query: 204 ---GLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHN 238
               L  +K + L +N+L  +    F+    L+ L L  N
Sbjct: 176 AFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 75.8 bits (187), Expect = 5e-16
 Identities = 49/196 (25%), Positives = 91/196 (46%), Gaps = 20/196 (10%)

Query: 132 SSHGL----SNVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQN 183
           SS  L    SN+    K+L +  N++  +          L++L    N+L+ +     + 
Sbjct: 24  SSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKE 83

Query: 184 LTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHN 238
           L NL+ LW+  N+++ +       L  + ++ L  N+L S+    F+    L  L L +N
Sbjct: 84  LKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143

Query: 239 GISKM-EGL-STLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAV 294
            +  + +G+   L +L  L + +N+L  V +     L+ L+ L L++NQ   L+ + E  
Sbjct: 144 ELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ---LKRVPEGA 200

Query: 295 AGSRETLTTIYLENNP 310
             S E L  + L+ NP
Sbjct: 201 FDSLEKLKMLQLQENP 216

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 70.9 bits (174), Expect = 4e-15
 Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 22/141 (15%)

Query: 173 NRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEE 232
            R+ +    +  ++++EL L        +       K   L           +E   LE 
Sbjct: 5   RRIHLELRNRTPSDVKELVL--------DNSRSNEGKLEGL----------TDEFEELEF 46

Query: 233 LYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDI--QNLSRLEDLWLNDNQIESLESI 290
           L   + G++ +  L  L  L  L++S N+++   ++  +    L  L L+ N+I+ L +I
Sbjct: 47  LSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTI 106

Query: 291 VEAVAGSRETLTTIYLENNPC 311
                   E L ++ L N   
Sbjct: 107 --EPLKKLENLKSLDLFNCEV 125

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 25/130 (19%), Positives = 49/130 (37%), Gaps = 14/130 (10%)

Query: 141 DTLKELYVSKNEVPKMEEIE---HFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
             +KEL +  +   + +       F +L+ L   +  L  + NL  L  L++L L  NR+
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRV 76

Query: 198 KVVNLC---GLKCIKKISLQSNRLTSMKGFE---ECIALEELYLSHNGISKMEG-----L 246
                        +  ++L  N++  +   E   +   L+ L L +  ++ +        
Sbjct: 77  SGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVF 136

Query: 247 STLVNLHVLD 256
             L  L  LD
Sbjct: 137 KLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 55.8 bits (135), Expect = 6e-10
 Identities = 29/110 (26%), Positives = 48/110 (43%), Gaps = 6/110 (5%)

Query: 164 DLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK 222
           +L +    SN  ++         L+ L      +  + NL  L  +KK+ L  NR++   
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGL 80

Query: 223 G--FEECIALEELYLSHNGISKMEG---LSTLVNLHVLDVSSNKLTLVDD 267
               E+C  L  L LS N I  +     L  L NL  LD+ + ++T ++D
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLND 130

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 51.6 bits (124), Expect = 2e-08
 Identities = 30/133 (22%), Positives = 56/133 (42%), Gaps = 14/133 (10%)

Query: 67  HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVS 126
             S++K+L L  +  ++  +E ++  D    LE L   +  L  I ++    KL   ++S
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLT--DEFEELEFLSTINVGLTSIANLPKLNKLKKLELS 72

Query: 127 FNEITS-SHGLSNVTDTLKELYVSKNEVPKMEEIEH---FHDLQILEFGSN--------R 174
            N ++     L+     L  L +S N++  +  IE      +L+ L+  +         R
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 175 LRVMENLQNLTNL 187
             V + L  LT L
Sbjct: 133 ENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.7 bits (101), Expect = 2e-05
 Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 28  VLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRIS-HLSNLKKLSLRQNLIDDAAI 86
            L   +  L  + ++     L +L+L+ NR++     ++    NL  L+L  N I D  +
Sbjct: 46  FLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKD--L 103

Query: 87  EPISRWDALAGLEELILRDNKLMKIPD-----VSIFKKLSVFD 124
             I     L  L+ L L + ++  + D       +  +L+  D
Sbjct: 104 STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD 146

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.7 bits (179), Expect = 5e-15
 Identities = 62/274 (22%), Positives = 101/274 (36%), Gaps = 83/274 (30%)

Query: 45  PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
                + +L    +T   ++   L+++ ++    + I   +++ I     L  +  L L 
Sbjct: 18  FAETIKANLKKKSVTDAVTQN-ELNSIDQIIANNSDI--KSVQGI---QYLPNVRYLALG 71

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
            NKL           +S              L+N    L  L ++ N+            
Sbjct: 72  GNKL---------HDISALK----------ELTN----LTYLILTGNQ------------ 96

Query: 165 LQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKG- 223
           LQ L  G            LTNL+EL                      L  N+L S+   
Sbjct: 97  LQSLPNGV--------FDKLTNLKELV---------------------LVENQLQSLPDG 127

Query: 224 -FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTL----VDDIQNLSRLED 276
            F++   L  L L+HN +  +       L NL  LD+S N+L      V D   L++L+D
Sbjct: 128 VFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD--KLTQLKD 185

Query: 277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           L L  NQ   L+S+ + V     +L  I+L +NP
Sbjct: 186 LRLYQNQ---LKSVPDGVFDRLTSLQYIWLHDNP 216

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 231 EELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI 290
            +  L    ++     + L ++  +  +++ +  V  IQ L  +  L L  N++  +   
Sbjct: 22  IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--- 78

Query: 291 VEAVAGSRETLTTIYLENN-----PCKIF 314
             +       LT + L  N     P  +F
Sbjct: 79  --SALKELTNLTYLILTGNQLQSLPNGVF 105

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.0 bits (180), Expect = 8e-15
 Identities = 65/265 (24%), Positives = 103/265 (38%), Gaps = 29/265 (10%)

Query: 40  DSVEFPTNLTELDLTANRLT---SLDSRISHLSNLKKLSLR-QNLIDDAAIEPISRWDAL 95
           D+      +  LDL+   L     + S +++L  L  L +   N +       I++   L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK---L 100

Query: 96  AGLEELILRDNKLM-KIPD-VSIFKKLSVFDVSFNEITSS--HGLSNVTDTLKELYVSKN 151
             L  L +    +   IPD +S  K L   D S+N ++ +    +S++   L  +    N
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP-NLVGITFDGN 159

Query: 152 ----EVPKMEEIEHFHDL-QILEFGSNRL--RVMENLQNLTNLQELWLGRNRIK---VVN 201
                +P       F  L   +    NRL  ++     NL NL  + L RN ++    V 
Sbjct: 160 RISGAIPD--SYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVL 216

Query: 202 LCGLKCIKKISLQSNRLT-SMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVS 258
               K  +KI L  N L   +        L  L L +N I     +GL+ L  LH L+VS
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 259 SNKLT-LVDDIQNLSRLEDLWLNDN 282
            N L   +    NL R +     +N
Sbjct: 277 FNNLCGEIPQGGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 59.9 bits (146), Expect = 2e-10
 Identities = 40/217 (18%), Positives = 76/217 (35%), Gaps = 42/217 (19%)

Query: 98  LEELILRDNKL---MKIPD-VSIFKKLSVFDVS-FNEITSS--HGLSNVTDTLKELYVSK 150
           +  L L    L     IP  ++    L+   +   N +       ++ +T  L  LY++ 
Sbjct: 52  VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ-LHYLYITH 110

Query: 151 N----EVPKMEEIEHFHDLQILEFGSNRL--RVMENLQNLTNLQELWLGRNRI------K 198
                 +P  + +     L  L+F  N L   +  ++ +L NL  +    NRI       
Sbjct: 111 TNVSGAIP--DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDS 168

Query: 199 VVNLCGLKCIKKISLQSNRLT--------SMKGFEECIALEELYLSHNGISKM--EGLST 248
             +   L     +++  NRLT        ++        L  + LS N +         +
Sbjct: 169 YGSFSKL--FTSMTISRNRLTGKIPPTFANLN-------LAFVDLSRNMLEGDASVLFGS 219

Query: 249 LVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQI 284
             N   + ++ N L   +  +     L  L L +N+I
Sbjct: 220 DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRI 256

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 46.4 bits (111), Expect = 5e-06
 Identities = 25/117 (21%), Positives = 42/117 (35%), Gaps = 12/117 (10%)

Query: 180 NLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQS-NRLTSM--KGFEECIALE 231
                  +  L L    +        +L  L  +  + +   N L         +   L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 232 ELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLT--LVDDIQNLSRLEDLWLNDNQI 284
            LY++H  +S    + LS +  L  LD S N L+  L   I +L  L  +  + N+I
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 69.7 bits (171), Expect = 3e-14
 Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 17/143 (11%)

Query: 185 TNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHN 238
               EL L  N   V+        L  ++KI+  +N++T +    FE    + E+ L+ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 239 GISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAV 294
            +  ++      L +L  L + SN++T V +     LS +  L L DNQ   + ++    
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ---ITTVAPGA 148

Query: 295 AGSRETLTTIYLENNP----CKI 313
             +  +L+T+ L  NP    C +
Sbjct: 149 FDTLHSLSTLNLLANPFNCNCYL 171

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.8 bits (148), Expect = 4e-11
 Identities = 36/169 (21%), Positives = 64/169 (37%), Gaps = 38/169 (22%)

Query: 38  DLDSV--EFPTNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWD 93
            L+ +    P    EL L  N  T L++      L  L+K++   N I    IE    ++
Sbjct: 22  KLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT--DIEE-GAFE 78

Query: 94  ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEV 153
             +G+ E++L  N+L  +          +F           GL +    LK L +  N  
Sbjct: 79  GASGVNEILLTSNRLENVQH-------KMFK----------GLES----LKTLMLRSN-- 115

Query: 154 PKMEEIEH--FHDL---QILEFGSNRLRVMEN--LQNLTNLQELWLGRN 195
            ++  + +  F  L   ++L    N++  +       L +L  L L  N
Sbjct: 116 -RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.5 bits (142), Expect = 3e-10
 Identities = 24/110 (21%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 16  PDQAVEIDLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNL 71
               +   L     ++ ++ ++ D++   F   + + E+ LT+NRL ++  ++   L +L
Sbjct: 48  EATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESL 107

Query: 72  KKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
           K L LR N I    +     +  L+ +  L L DN++  +     F  L 
Sbjct: 108 KTLMLRSNRI--TCV-GNDSFIGLSSVRLLSLYDNQITTVAP-GAFDTLH 153

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 56.6 bits (137), Expect = 1e-09
 Identities = 38/197 (19%), Positives = 70/197 (35%), Gaps = 50/197 (25%)

Query: 47  NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN 106
             T +D +  +L  +   I       +L L  N      +E    +  L  L ++   +N
Sbjct: 12  EGTTVDCSNQKLNKIPEHIP--QYTAELRLNNNEF--TVLEATGIFKKLPQLRKINFSNN 67

Query: 107 KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQ 166
           K+  I +         F+          G S     + E+ ++ N             L+
Sbjct: 68  KITDIEE-------GAFE----------GASG----VNEILLTSNR------------LE 94

Query: 167 ILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMK- 222
            ++            + L +L+ L L  NRI  V      GL  ++ +SL  N++T++  
Sbjct: 95  NVQHKM--------FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP 146

Query: 223 -GFEECIALEELYLSHN 238
             F+   +L  L L  N
Sbjct: 147 GAFDTLHSLSTLNLLAN 163

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 42/253 (16%), Positives = 82/253 (32%), Gaps = 45/253 (17%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
                 +T   +  + S   P +   L L    L ++ S   S+L N+ ++ +  ++   
Sbjct: 12  QEEDFRVTCKDIQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDV--- 66

Query: 84  AAIEPISRW--DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
             ++ +       L+ +  + +R+ + +   D    K+L                     
Sbjct: 67  -TLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELP-------------------- 105

Query: 142 TLKELYVSKN---EVPKMEEIEHFHDLQILEFGSN-RLRVMEN--LQNLTN-LQELWLGR 194
            LK L +        P + ++       ILE   N  +  +     Q L N    L L  
Sbjct: 106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYN 165

Query: 195 NRIKVVN---LCGLKCIKKISLQSNR-LTSMKG--FEECI-ALEELYLSHNGISKMEGLS 247
           N    V      G K +  + L  N+ LT +    F         L +S   ++ +    
Sbjct: 166 NGFTSVQGYAFNGTK-LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS-K 223

Query: 248 TLVNLHVLDVSSN 260
            L +L  L   + 
Sbjct: 224 GLEHLKELIARNT 236

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 67.1 bits (164), Expect = 1e-13
 Identities = 24/113 (21%), Positives = 48/113 (42%), Gaps = 4/113 (3%)

Query: 201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN 260
               ++ +   + +SN         E + LE L L + G+  +  L  L  L  L++S N
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSEN 81

Query: 261 KLTLVDDI--QNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311
           ++    D+  + L  L  L L+ N+++ + ++        E L ++ L N   
Sbjct: 82  RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL--EPLKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 54.4 bits (131), Expect = 4e-09
 Identities = 30/129 (23%), Positives = 53/129 (41%), Gaps = 14/129 (10%)

Query: 142 TLKELYV--SKNEVPKMEEI-EHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK 198
            ++EL +   K+   K+E +   F +L+ L   +  L  + NL  L  L++L L  NRI 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIF 84

Query: 199 VVN---LCGLKCIKKISLQSNRLTSMKGFE---ECIALEELYLSHNGISKMEG-----LS 247
                    L  +  ++L  N+L  +   E   +   L+ L L +  ++ +         
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144

Query: 248 TLVNLHVLD 256
            L  L  LD
Sbjct: 145 LLPQLTYLD 153

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 50.5 bits (121), Expect = 7e-08
 Identities = 29/153 (18%), Positives = 57/153 (37%), Gaps = 24/153 (15%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
           +  + +D+       L +R    + +++L L     +D  IE ++       LE L L +
Sbjct: 3   SGSSGMDMKRRIHLELRNR--TPAAVRELVLDNCKSNDGKIEGLT--AEFVNLEFLSLIN 58

Query: 106 NKLMKIPDVSIFKKLSVFDVSFNEITS-SHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
             L+ + ++    KL   ++S N I      L+     L  L +S N++  +  +E    
Sbjct: 59  VGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEP--- 115

Query: 165 LQILEFGSNRLRVMENLQNLTNLQELWLGRNRI 197
                           L+ L  L+ L L    +
Sbjct: 116 ----------------LKKLECLKSLDLFNCEV 132

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 3e-06
 Identities = 30/148 (20%), Positives = 52/148 (35%), Gaps = 26/148 (17%)

Query: 1   MDMDGEKQPSAEATNPDQAVEIDLSN------------------TVLDLTSFQLHDLDSV 42
           MDM            P    E+ L N                    L L +  L  + ++
Sbjct: 8   MDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNL 67

Query: 43  EFPTNLTELDLTANRLTSLDSRIS-HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL 101
                L +L+L+ NR+      ++  L NL  L+L  N + D  I  +     L  L+ L
Sbjct: 68  PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKSL 125

Query: 102 ILRDNKLMKIPD-----VSIFKKLSVFD 124
            L + ++  + D       +  +L+  D
Sbjct: 126 DLFNCEVTNLNDYRESVFKLLPQLTYLD 153

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 66.2 bits (162), Expect = 5e-13
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 16/142 (11%)

Query: 185 TNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNG 239
             + E+ L +N IKV+        K +++I L +N+++ +    F+   +L  L L  N 
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 240 ISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVA 295
           I+++       L +L +L +++NK+  +     Q+L  L  L L DN+   L++I +   
Sbjct: 92  ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK---LQTIAKGTF 148

Query: 296 GSRETLTTIYLENNP----CKI 313
                + T++L  NP    C +
Sbjct: 149 SPLRAIQTMHLAQNPFICDCHL 170

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 37/167 (22%), Positives = 67/167 (40%), Gaps = 37/167 (22%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L  +    P  +TE+ L  N +  +     S    L+++ L  N I  + + P   +  L
Sbjct: 23  LTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI--SELAP-DAFQGL 79

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK 155
             L  L+L  NK+ ++P        S+F+          GL +    L+ L ++ N   K
Sbjct: 80  RSLNSLVLYGNKITELPK-------SLFE----------GLFS----LQLLLLNAN---K 115

Query: 156 MEEIEH--FHD---LQILEFGSNRLRVMEN--LQNLTNLQELWLGRN 195
           +  +    F D   L +L    N+L+ +       L  +Q + L +N
Sbjct: 116 INCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 28/98 (28%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 27  TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
             +DL++ Q+ +L    F    +L  L L  N++T L   +   L +L+ L L  N I  
Sbjct: 59  RRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI-- 116

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
             +  +  +  L  L  L L DNKL  I     F  L 
Sbjct: 117 NCL-RVDAFQDLHNLNLLSLYDNKLQTIAK-GTFSPLR 152

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 67.8 bits (166), Expect = 5e-13
 Identities = 50/321 (15%), Positives = 101/321 (31%), Gaps = 74/321 (23%)

Query: 45  PTNLTELDLTANRLTSLDSR------ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG- 97
           P  +T LDL+ N L S+ +        +  +++  L+L  N +     + +     LA  
Sbjct: 21  PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELV--QILAAI 78

Query: 98  ---LEELILRDNKL-----MKIPDV--SIFKKLSVFDVSFNEITS------SHGLSNVTD 141
              +  L L  N L      ++     +I   ++V D+ +N+ +S          SN+  
Sbjct: 79  PANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPA 138

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL-TNLQELWLGRNRIKVV 200
           ++  L +  N               +    S+ L  ++ L  +  N+  L L  N +   
Sbjct: 139 SITSLNLRGN--------------DLGIKSSDEL--IQILAAIPANVNSLNLRGNNLASK 182

Query: 201 NLCGL--------KCIKKISLQSNRLTS--MKGFEECIA-----LEELYLSHNGISK--- 242
           N   L          +  + L +N L            +     +  L L  N +     
Sbjct: 183 NCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242

Query: 243 ---MEGLSTLVNLHVLDVSSNKLT---------LVDDIQNLSRLEDLWLNDNQI--ESLE 288
                   +L +L  + +  + +          L     N+ ++  +  N  +I      
Sbjct: 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302

Query: 289 SIVEAVAGSRETLTTIYLENN 309
            I   +           L N 
Sbjct: 303 PISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 45/334 (13%), Positives = 103/334 (30%), Gaps = 78/334 (23%)

Query: 27  TVLDLTSFQLHDLDSVEF-------PTNLTELDLTANRLTSLDSR------ISHLSNLKK 73
           T LDL+   L+ + +VE        P ++T L+L+ N L   +S        +  +N+  
Sbjct: 25  TSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTS 84

Query: 74  LSLRQNLIDDAAIEPISRWDALAG----LEELILRDNKL-----MKIPDV--SIFKKLSV 122
           L+L  N +   + + +     LA     +  L L  N        +      ++   ++ 
Sbjct: 85  LNLSGNFLSYKSSDELV--KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142

Query: 123 FDVSFNEITS------SHGLSNVTDTLKELYVSKNEVPK------MEEIEHFHD-LQILE 169
            ++  N++           L+ +   +  L +  N +         + +      +  L+
Sbjct: 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLD 202

Query: 170 FGSNRLRV--MENL-----QNLTNLQELWLGRNRIKVVNLCGL-------KCIKKISLQS 215
             +N L +     L         ++  L L  N +   +L  L       K ++ + L  
Sbjct: 203 LSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDY 262

Query: 216 NRLTSM---------KGFEECIALEELYLSHNGISKMEGLSTLV--------NLHVLDVS 258
           + + +M           F     +  +  +   I        +            V  + 
Sbjct: 263 DIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP-SHSIPISNLIRELSGKADVPSLL 321

Query: 259 SNKLTLV-------DDIQNLSRLEDLWLNDNQIE 285
           +  L          +D+     L +       + 
Sbjct: 322 NQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 29/161 (18%), Positives = 54/161 (33%), Gaps = 33/161 (20%)

Query: 181 LQNLTNLQELWLGRNRIK---VVNLC-GLKC----IKKISLQSNRLTS--MKGFEECIA- 229
                 +  L L  N +     V L          +  ++L  N L         + +A 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 230 ----LEELYLSHNGISKMEGLSTLVN--------LHVLDVSSNKLT------LVDDIQNL 271
               +  L LS N +S  +    LV         + VLD+  N  +            NL
Sbjct: 78  IPANVTSLNLSGNFLSY-KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 272 -SRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTIYLENN 309
            + +  L L  N +  +S + +++ +A     + ++ L  N
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN 177

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 63.9 bits (156), Expect = 5e-12
 Identities = 42/195 (21%), Positives = 70/195 (35%), Gaps = 42/195 (21%)

Query: 132 SSHGLSNV-----TDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGSNRLRVMEN--LQ 182
               L +V      DT ++L +    +  + +        L  L    N+L+ +      
Sbjct: 22  QGKSLDSVPSGIPADT-EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD 80

Query: 183 NLTNLQELWLGRNRIKVVNLCGLKCIKKISLQS---NRLTSMKGFEECIALEELYLSHNG 239
           +LT L  L L  N++              SL     + LT          L++LYL  N 
Sbjct: 81  DLTELGTLGLANNQLA-------------SLPLGVFDHLT---------QLDKLYLGGNQ 118

Query: 240 ISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVA 295
           +  +       L  L  L +++N+L  +       L+ L+ L L+ NQ   L+S+     
Sbjct: 119 LKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQ---LQSVPHGAF 175

Query: 296 GSRETLTTIYLENNP 310
                L TI L  N 
Sbjct: 176 DRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 58.6 bits (142), Expect = 3e-10
 Identities = 55/201 (27%), Positives = 81/201 (40%), Gaps = 50/201 (24%)

Query: 22  IDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
           I      LDL S  L  L    F   T LT L+L  N+L +L + +   L+ L  L L  
Sbjct: 33  IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
           N +  A++     +D L  L++L L  N+L  +P         VFD           L+ 
Sbjct: 93  NQL--ASLPL-GVFDHLTQLDKLYLGGNQLKSLPS-------GVFD----------RLTK 132

Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK 198
               LKEL ++ N+            LQ +  G+           LTNLQ L L  N+++
Sbjct: 133 ----LKELRLNTNQ------------LQSIPAGA--------FDKLTNLQTLSLSTNQLQ 168

Query: 199 VV---NLCGLKCIKKISLQSN 216
            V       L  ++ I+L  N
Sbjct: 169 SVPHGAFDRLGKLQTITLFGN 189

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 60.1 bits (146), Expect = 8e-11
 Identities = 43/134 (32%), Positives = 64/134 (47%), Gaps = 11/134 (8%)

Query: 185 TNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNG 239
           TN Q L+L  N+I  +       L  +K++ L SN+L ++    F+    L  L L  N 
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99

Query: 240 ISKME-GL-STLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAG 296
           ++ +   +   LV+L  L +  NKLT L   I+ L+ L  L L+ NQ   L+SI      
Sbjct: 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ---LKSIPHGAFD 156

Query: 297 SRETLTTIYLENNP 310
              +LT  YL  NP
Sbjct: 157 RLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 32/115 (27%), Positives = 53/115 (46%), Gaps = 7/115 (6%)

Query: 22  IDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
           I  +  +L L   Q+  L+   F    NL EL L +N+L +L   +   L+ L  L L  
Sbjct: 38  IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITS 132
           N +      P + +D L  L+EL +  NKL ++P  +     L+   +  N++ S
Sbjct: 98  NQLTVL---PSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 16  PDQAVEIDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRISHLSNLKK 73
            D   ++    TVLDL + QL  L S  F    +L EL +  N+LT L   I  L++L  
Sbjct: 84  FDSLTQL----TVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139

Query: 74  LSLRQNLIDDAAIEPISRWDALAGLEELILRDN 106
           L+L QN +      P   +D L+ L    L  N
Sbjct: 140 LALDQNQLKSI---PHGAFDRLSSLTHAYLFGN 169

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 57.8 bits (140), Expect = 4e-10
 Identities = 36/135 (26%), Positives = 61/135 (45%), Gaps = 12/135 (8%)

Query: 185 TNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNG 239
                L L  N +K +       L  + ++ L  N+L S+    F +  +L  L LS N 
Sbjct: 28  AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87

Query: 240 ISKMEG--LSTLVNLHVLDVSSNKLTLVDD--IQNLSRLEDLWLNDNQIESLESIVEAVA 295
           +  +       L  L  L +++N+L  + D     L++L+DL L  NQ   L+S+ + V 
Sbjct: 88  LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ---LKSVPDGVF 144

Query: 296 GSRETLTTIYLENNP 310
               +L  I+L +NP
Sbjct: 145 DRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 33/98 (33%), Positives = 55/98 (56%), Gaps = 7/98 (7%)

Query: 27  TVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDD 83
           T L L   +L  L +  F   T+LT L+L+ N+L SL + +   L+ LK+L+L  N +  
Sbjct: 55  TQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQL-- 112

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
            ++ P   +D L  L++L L  N+L  +PD  +F +L+
Sbjct: 113 QSL-PDGVFDKLTQLKDLRLYQNQLKSVPD-GVFDRLT 148

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.5 bits (116), Expect = 6e-07
 Identities = 35/102 (34%), Positives = 54/102 (52%), Gaps = 7/102 (6%)

Query: 22  IDLSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
           I    T LDL +  L  L +  F   T+LT+L L  N+L SL + + + L++L  L+L  
Sbjct: 26  IPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST 85

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKL 120
           N +   ++     +D L  L+EL L  N+L  +PD  +F KL
Sbjct: 86  NQL--QSLPN-GVFDKLTQLKELALNTNQLQSLPD-GVFDKL 123

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 56.5 bits (137), Expect = 9e-10
 Identities = 26/116 (22%), Positives = 43/116 (37%), Gaps = 16/116 (13%)

Query: 209 KKISLQSNRLTSMKG-FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLT-- 263
            ++ L  N+ T +         L  + LS+N IS +     S +  L  L +S N+L   
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCI 93

Query: 264 --LVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP----CKI 313
                D   L  L  L L+ N    +  + E        L+ + +  NP    C +
Sbjct: 94  PPRTFD--GLKSLRLLSLHGND---ISVVPEGAFNDLSALSHLAIGANPLYCDCNM 144

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 35/151 (23%), Positives = 58/151 (38%), Gaps = 44/151 (29%)

Query: 45  PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR 104
           P ++TEL L  N+ T +   +S+  +L  + L  N I  + +   S +  +  L  LIL 
Sbjct: 30  PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI--STLSNQS-FSNMTQLLTLILS 86

Query: 105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHD 164
            N+L  IP          FD          GL +    L+ L +  N            D
Sbjct: 87  YNRLRCIPP-------RTFD----------GLKS----LRLLSLHGN------------D 113

Query: 165 LQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
           + ++  G+          +L+ L  L +G N
Sbjct: 114 ISVVPEGA--------FNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.2 bits (105), Expect = 1e-05
 Identities = 32/122 (26%), Positives = 60/122 (49%), Gaps = 18/122 (14%)

Query: 132 SSHGLSNV-----TDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVMEN--LQN 183
           S+ GL  +      D   ELY+  N+   + +E+ ++  L +++  +NR+  + N    N
Sbjct: 18  SNKGLKVLPKGIPRDV-TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN 76

Query: 184 LTNLQELWLGRNRIK-----VVNLCGLKCIKKISLQSNRLTSM-KG-FEECIALEELYLS 236
           +T L  L L  NR++       +  GLK ++ +SL  N ++ + +G F +  AL  L + 
Sbjct: 77  MTQLLTLILSYNRLRCIPPRTFD--GLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIG 134

Query: 237 HN 238
            N
Sbjct: 135 AN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 14/116 (12%)

Query: 209 KKISLQSNRLTSMKG---FEECIALEELYLSHNGISKME-GL-STLVNLHVLDVSSNKLT 263
            ++ L  N L  +     F     L +L L  N ++ +E        ++  L +  NK+ 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91

Query: 264 LVDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP----CKI 313
            + +     L +L+ L L DNQ   +  ++        +LT++ L +NP    C +
Sbjct: 92  EISNKMFLGLHQLKTLNLYDNQ---ISCVMPGSFEHLNSLTSLNLASNPFNCNCHL 144

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 36/155 (23%), Positives = 59/155 (38%), Gaps = 50/155 (32%)

Query: 45  PTNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI 102
           P + TEL L  N L  + S      L +L KL L++N +    IEP + ++  + ++EL 
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL--TGIEP-NAFEGASHIQELQ 84

Query: 103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHF 162
           L +NK+ +I +        +F           GL                          
Sbjct: 85  LGENKIKEISN-------KMFL----------GLHQ------------------------ 103

Query: 163 HDLQILEFGSNRLR-VMEN-LQNLTNLQELWLGRN 195
             L+ L    N++  VM    ++L +L  L L  N
Sbjct: 104 --LKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 28/128 (21%)

Query: 132 SSHGLSNV-----TDTLKELYVSKNEVPKMEEIEHFHD---LQILEFGSNRLRVMEN--L 181
           +  GL  +       T  EL ++ NE+ ++     F     L  LE   N+L  +E    
Sbjct: 16  TGRGLKEIPRDIPLHT-TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74

Query: 182 QNLTNLQELWLGRNRI---------KVVNLCGLKCIKKISLQSNRLTS-MKG-FEECIAL 230
           +  +++QEL LG N+I          +  L      K ++L  N+++  M G FE   +L
Sbjct: 75  EGASHIQELQLGENKIKEISNKMFLGLHQL------KTLNLYDNQISCVMPGSFEHLNSL 128

Query: 231 EELYLSHN 238
             L L+ N
Sbjct: 129 TSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 16/68 (23%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 16  PDQAVEIDLSN-TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNL 71
               +   L +   L+L   QL  ++   F   +++ EL L  N++  + +++   L  L
Sbjct: 45  SSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQL 104

Query: 72  KKLSLRQN 79
           K L+L  N
Sbjct: 105 KTLNLYDN 112

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.8 bits (130), Expect = 5e-09
 Identities = 32/108 (29%), Positives = 58/108 (53%), Gaps = 9/108 (8%)

Query: 209 KKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM-EGL-STLVNLHVLDVSSNKLTL 264
            ++ L+SN+L S+    F++   L +L LS N I  + +G+   L  L +L +  NKL  
Sbjct: 31  TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90

Query: 265 VDD--IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
           + +     L++L++L L+ NQ   L+S+ + +     +L  I+L  NP
Sbjct: 91  LPNGVFDKLTQLKELALDTNQ---LKSVPDGIFDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 50.7 bits (122), Expect = 6e-08
 Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 7/103 (6%)

Query: 22  IDLSNTVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQ 78
           I  S T L+L S +L  L    F   T LT+L L+ N++ SL   +   L+ L  L L +
Sbjct: 26  IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLS 121
           N +   ++ P   +D L  L+EL L  N+L  +PD  IF +L+
Sbjct: 86  NKL--QSL-PNGVFDKLTQLKELALDTNQLKSVPD-GIFDRLT 124

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 13/124 (10%)

Query: 213 LQSNRLTSMKGFEECIALEELYLSHNGISKM---EGLSTLVNLHVLDVSSNKLTLVDD-- 267
            +   L S+        L ELY+ +    +      L  L  L  L +  + L  V    
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75

Query: 268 IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP----CKIFKLFCYPQTN 323
                RL  L L+ N +ESL    + V G   +L  + L  NP    C +  L  + +  
Sbjct: 76  FHFTPRLSRLNLSFNALESLSW--KTVQGL--SLQELVLSGNPLHCSCALRWLQRWEEEG 131

Query: 324 FPKY 327
               
Sbjct: 132 LGGV 135

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 52.8 bits (126), Expect = 5e-08
 Identities = 23/152 (15%), Positives = 47/152 (30%), Gaps = 21/152 (13%)

Query: 173 NRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEE 232
             L  + +L    NL EL++   +           ++ + L+               L  
Sbjct: 19  GALDSLHHLPGAENLTELYIENQQH----------LQHLELRD--------LRGLGELRN 60

Query: 233 LYLSHNGISKMEG--LSTLVNLHVLDVSSNKLT-LVDDIQNLSRLEDLWLNDNQIESLES 289
           L +  +G+  +          L  L++S N L  L         L++L L+ N +    +
Sbjct: 61  LTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCA 120

Query: 290 IVEAVAGSRETLTTIYLENNPCKIFKLFCYPQ 321
           +        E L  +  +   C       +  
Sbjct: 121 LRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP 152

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.8 bits (113), Expect = 2e-06
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 12/91 (13%)

Query: 36  LHDLDSVEFPTNLTELDLTANR-LTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWD 93
           L  L  +    NLTEL +   + L  L+ R +  L  L+ L++ ++ +    + P    D
Sbjct: 21  LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR--FVAP----D 74

Query: 94  ALAG---LEELILRDNKLMKIPDVSIFKKLS 121
           A      L  L L  N L  +      + LS
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSW-KTVQGLS 104

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 31/198 (15%), Positives = 59/198 (29%), Gaps = 51/198 (25%)

Query: 126 SFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLT 185
           + + +    G  N    L ELY+   +      ++H                  +L+ L 
Sbjct: 20  ALDSLHHLPGAEN----LTELYIENQQ-----HLQHLEL--------------RDLRGLG 56

Query: 186 NLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM-E 244
            L+ L + ++ ++ V                   +   F     L  L LS N +  +  
Sbjct: 57  ELRNLTIVKSGLRFV-------------------APDAFHFTPRLSRLNLSFNALESLSW 97

Query: 245 GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTI 304
                ++L  L +S N L     ++        WL   + E L  + E            
Sbjct: 98  KTVQGLSLQELVLSGNPLHCSCALR--------WLQRWEEEGLGGVPEQKLQCHGQGPLA 149

Query: 305 YLENNPCKIFKLFCYPQT 322
           ++ N  C +  L      
Sbjct: 150 HMPNASCGVPTLKVQVPN 167

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 1e-04
 Identities = 23/113 (20%), Positives = 42/113 (37%), Gaps = 12/113 (10%)

Query: 45  PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG---LEEL 101
           P   + L  T +        +    NL +L +         ++ +     L G   L  L
Sbjct: 7   PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQ----QHLQHL-ELRDLRGLGELRNL 61

Query: 102 ILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKN 151
            +  + L  +     F    +LS  ++SFN + S    +    +L+EL +S N
Sbjct: 62  TIVKSGLRFVAP-DAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 50.3 bits (121), Expect = 9e-08
 Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 11/86 (12%)

Query: 231 EELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTL----VDDIQNLSRLEDLWLNDNQI 284
           + LYL  N I+K+E      L  L  LD+ +N+LT+    V D   L++L  L LNDNQ 
Sbjct: 33  QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFD--KLTQLTQLSLNDNQ- 89

Query: 285 ESLESIVEAVAGSRETLTTIYLENNP 310
             L+SI      + ++LT I+L NNP
Sbjct: 90  --LKSIPRGAFDNLKSLTHIWLLNNP 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 7/86 (8%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L SV    PT    L L  N++T L+  +   L+ L +L L  N +    + P   +D L
Sbjct: 21  LASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL--TVL-PAGVFDKL 77

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLS 121
             L +L L DN+L  IP    F  L 
Sbjct: 78  TQLTQLSLNDNQLKSIPR-GAFDNLK 102

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 27 TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQN 79
           VL L   Q+  L+   F   T LT LDL  N+LT L + +   L+ L +LSL  N
Sbjct: 33 QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 37/86 (43%), Positives = 51/86 (59%), Gaps = 11/86 (12%)

Query: 231 EELYLSHNGISKME-GL-STLVNLHVLDVSSNKLTL----VDDIQNLSRLEDLWLNDNQI 284
           + L+L++N I+K+E G+   LVNL  L  +SNKLT     V D   L++L  L LNDN  
Sbjct: 36  QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFD--KLTQLTQLDLNDNH- 92

Query: 285 ESLESIVEAVAGSRETLTTIYLENNP 310
             L+SI      + ++LT IYL NNP
Sbjct: 93  --LKSIPRGAFDNLKSLTHIYLYNNP 116

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 45.3 bits (108), Expect = 4e-06
 Identities = 31/86 (36%), Positives = 41/86 (47%), Gaps = 7/86 (8%)

Query: 39  LDSV--EFPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLIDDAAIEPISRWDAL 95
           L SV    PT+   L L  N++T L+  +  HL NL++L    N +   AI P   +D L
Sbjct: 24  LASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKL--TAI-PTGVFDKL 80

Query: 96  AGLEELILRDNKLMKIPDVSIFKKLS 121
             L +L L DN L  IP    F  L 
Sbjct: 81  TQLTQLDLNDNHLKSIPR-GAFDNLK 105

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 40.7 bits (96), Expect = 2e-04
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 27 TVLDLTSFQLHDLDSVEFP--TNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQN 79
            L L + Q+  L+   F    NL +L   +N+LT++ + +   L+ L +L L  N
Sbjct: 36 QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 25/111 (22%), Positives = 53/111 (47%), Gaps = 13/111 (11%)

Query: 186 NLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEE-CIALEELYLSHNGISKME 244
           +L+ L    + +       L      + +S    +++  EE    L  L LS+N + +++
Sbjct: 133 DLKGLRSDPDLVAQNIDVVL------NRRSCMAATLRIIEENIPELLSLNLSNNRLYRLD 186

Query: 245 GLSTLV----NLHVLDVSSNKLTLVDDIQNLS--RLEDLWLNDNQIESLES 289
            +S++V    NL +L++S N+L    ++  +   +LE+LWL+ N +     
Sbjct: 187 DMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFR 237

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 50.1 bits (120), Expect = 4e-07
 Identities = 38/302 (12%), Positives = 83/302 (27%), Gaps = 93/302 (30%)

Query: 46  TNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
             L E++L + +L     R  +      +KL L+ N +   A + +            +L
Sbjct: 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD----------LL 150

Query: 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITS------SHGLSNVTDTLKELYVSKNEVPKME 157
             ++           +++   +S N +T+        GL+  T ++  L +         
Sbjct: 151 LHDQ----------CQITTLRLSNNPLTAAGVAVLMEGLAGNT-SVTHLSLLHT------ 193

Query: 158 EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKIS--LQS 215
                    + + G   L     L     LQEL +  N        G      ++   + 
Sbjct: 194 --------GLGDEGLELL--AAQLDRNRQLQELNVAYNGA------GDTAALALARAARE 237

Query: 216 NRLTSMKGFEECIALEELYLSHNGISK---------MEGLSTLVNLHVLDVSSNKLT--- 263
           +            +LE L+L  N +S                   + V       ++   
Sbjct: 238 HP-----------SLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYW 286

Query: 264 --------------LVDDIQNLSRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTIYLE 307
                             +Q    L    L D++    +     + +      +  +  +
Sbjct: 287 SVILSEVQRNLNSWDRARVQRHLELLLRDLEDSRGATLNPWRKAQLLRVEG-EVRALLEQ 345

Query: 308 NN 309
             
Sbjct: 346 LG 347

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 49/301 (16%), Positives = 96/301 (31%), Gaps = 62/301 (20%)

Query: 27  TVLD-LTSFQLHDLDSVEFPTNLTE---LDLTANRLTSLDSRISHLSN-LKKLS-LRQNL 80
            V D L++     +        LT      L       LD R   L   +   +  R ++
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK---YLDCRPQDLPREVLTTNPRRLSI 332

Query: 81  IDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSI-----------FKKLSVFDVSFNE 129
           I ++  + ++ WD         +  +KL  I + S+           F +LSVF  S + 
Sbjct: 333 IAESIRDGLATWDNW-----KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH- 386

Query: 130 ITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV------MENLQN 183
           I         T  L  ++    +   M  +   H   ++E       +      +E    
Sbjct: 387 IP--------TILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

Query: 184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNR----------LTSMKGFEECIALEEL 233
           L N     L R+ +   N+        +                L +++  E       +
Sbjct: 439 LENEYA--LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496

Query: 234 YLSHNGI-SKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLED-LWLNDNQIESLESIV 291
           +L    +  K+   ST  N           ++++ +Q L   +  +  ND + E L + +
Sbjct: 497 FLDFRFLEQKIRHDSTAWN--------ASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548

Query: 292 E 292
            
Sbjct: 549 L 549

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 44/313 (14%), Positives = 100/313 (31%), Gaps = 79/313 (25%)

Query: 37  HDLDSVEFPTNLTELDLTANRLTSL-------DSRISHLSNLKKLSLRQNLIDDAAIEPI 89
           H +D         E       + S+       +     + ++ K  L +  ID   +   
Sbjct: 5   HHMD-----FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK- 58

Query: 90  SRWDALAGLEEL--ILRDNKLMKIPDVSIFKKL--SVFDVSFNEITSS-HGLSNVTDTLK 144
              DA++G   L   L   +        + +K    V  +++  + S           + 
Sbjct: 59  ---DAVSGTLRLFWTLLSKQ------EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT 109

Query: 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCG 204
            +Y+ + +     + + F    +     +RL+    L+    L EL   R    V+ + G
Sbjct: 110 RMYIEQRD-RLYNDNQVFAKYNV-----SRLQPYLKLRQ--ALLEL---RPAKNVL-IDG 157

Query: 205 LKCIKKISL-----QSNRLTSMKGFE-------EC-------IALEELY--LSHNGISKM 243
           +    K  +      S ++     F+        C         L++L   +  N  S+ 
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217

Query: 244 EGLSTL-VNLHVLDVSSNKLT---------LV-DDIQNLSRLEDLWLNDNQIESL----- 287
           +  S + + +H +     +L          LV  ++QN          +   + L     
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF---NLSCKILLTTRF 274

Query: 288 ESIVEAVAGSRET 300
           + + + ++ +  T
Sbjct: 275 KQVTDFLSAATTT 287

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 48.8 bits (116), Expect = 1e-06
 Identities = 48/326 (14%), Positives = 97/326 (29%), Gaps = 59/326 (18%)

Query: 23  DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQ-NLI 81
           +     L+          ++ FP  L  L L+      +       + ++KL L    L 
Sbjct: 247 EFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLE 306

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIF------KKLSVFDVSF--NEITSS 133
            +     I +      LE L  R+     I D  +       K+L    +    +E    
Sbjct: 307 TEDHCTLIQK---CPNLEVLETRNV----IGDRGLEVLAQYCKQLKRLRIERGADEQGME 359

Query: 134 HGLSNVTD-TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL------RVMENLQNLTN 186
                V+   L  L             +   +L+ +    + +       +   L+NL +
Sbjct: 360 DEEGLVSQRGLIAL------------AQGCQELEYMAVYVSDITNESLESIGTYLKNLCD 407

Query: 187 LQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM-----------KGFEE----CIALE 231
            + + L R   ++ +L     ++ + +   +L               G          + 
Sbjct: 408 FRLVLLDREE-RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVR 466

Query: 232 ELYLSHNGISKMEGLSTLV----NLHVLDVSSNKLT---LVDDIQNLSRLEDLWLNDNQI 284
            + L + G S  EGL        NL  L++     +   +   +  L  L  LW+   + 
Sbjct: 467 WMLLGYVGES-DEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRA 525

Query: 285 ESLESIVEAVAGSRETLTTIYLENNP 310
                 +  +A     +  I     P
Sbjct: 526 SMTGQDLMQMARPYWNIELIPSRRVP 551

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 47.6 bits (113), Expect = 3e-06
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 21/247 (8%)

Query: 47  NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN 106
           NL   +        +    ++L  LK +  R+ ++ D  ++ +++      LE L L   
Sbjct: 90  NLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAK-ARADDLETLKLDKC 148

Query: 107 KLMKIPDVSIF------KKLSVFDVSFNEIT--SSHGLSNVTDTLKELYVSKNEVPKMEE 158
                    +       +K+    +  +  +      L  +      L V    + +  +
Sbjct: 149 S--GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAK 206

Query: 159 IEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRL 218
           I    DL+ +      L  +  + +   L+ +   +    +   CG       +      
Sbjct: 207 I-SPKDLETIARNCRSLVSV-KVGDFEILELVGFFKAAANLEEFCGGSL----NEDIGMP 260

Query: 219 TSMKGFEECIALEELYLSHNGISKMEGLSTLV-NLHVLDVSSNKLT---LVDDIQNLSRL 274
                      L  L LS+ G ++M  L      +  LD+    L        IQ    L
Sbjct: 261 EKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320

Query: 275 EDLWLND 281
           E L   +
Sbjct: 321 EVLETRN 327

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 42.1 bits (99), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 44 FPTNLTELDLTANRLTSLDSRI-SHLSNLKKLSLRQNLID-DAAIEPISRW 92
          FP + TEL LT N LT+L   +   L  L+   L  N    D  + P+  W
Sbjct: 29 FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRAW 79

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Length = 130

 Score = 39.8 bits (93), Expect = 2e-04
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 6/62 (9%)

Query: 230 LEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL 287
             EL L+ N ++ +    L  L  L    + +N       +  L      WL      + 
Sbjct: 33  TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCRLVPLRA----WLAGRPERAP 88

Query: 288 ES 289
             
Sbjct: 89  YR 90

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 43/256 (16%), Positives = 91/256 (35%), Gaps = 34/256 (13%)

Query: 47  NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN 106
           NL            +++  S  + L+++ L++ ++ D  +E I++  +    + L+L  +
Sbjct: 83  NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAK--SFKNFKVLVL--S 138

Query: 107 KLMKIPDVSI------FKKLSVFDVSFNEIT--SSHGLSNVTD---TLKELYVSKNEVPK 155
                    +       + L   D+  +++   S H LS+  D   +L  L +S      
Sbjct: 139 SCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNIS-----C 193

Query: 156 MEEIEHFHDLQILEFGSNRLRV--MENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISL 213
           +     F  L+ L      L+   +     L  L  L     +++ +   G     +  +
Sbjct: 194 LASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDV 253

Query: 214 QSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLV----NLHVLDVSSNKLT---LVD 266
            S    ++ G       E   LS    +    L  +      L  L++S   +    LV 
Sbjct: 254 YSGLSVALSGC-----KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVK 308

Query: 267 DIQNLSRLEDLWLNDN 282
            +    +L+ LW+ D 
Sbjct: 309 LLCQCPKLQRLWVLDY 324

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 39.9 bits (93), Expect = 9e-04
 Identities = 37/273 (13%), Positives = 87/273 (31%), Gaps = 30/273 (10%)

Query: 46  TNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
           + LT L+L+   +    L   +     L++L +  + I+DA +E ++       L EL +
Sbjct: 289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVL-DYIEDAGLEVLAS--TCKDLRELRV 345

Query: 104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSH---GLSNVTD-TLKELYVSKNEVPKMEEI 159
             ++   +       +  +  VS               +T+  L  +  +    P M   
Sbjct: 346 FPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARN---RPNMTRF 402

Query: 160 EHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGR---NRIKVVNLCGLKCIKKIS 212
                                    +++  +L+ L L     +++        K ++ +S
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLS 462

Query: 213 LQSNRLTSMKGFEE----CIALEELYLSHNGISK---MEGLSTLVNLHVLDVSSNKLTL- 264
           +     +   G       C +L +L +          +   S L  +  L +SS  ++  
Sbjct: 463 VAFAGDSD-LGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFG 521

Query: 265 -VDDI-QNLSRLEDLWLNDNQIESLESIVEAVA 295
               + Q + +L    +++            V 
Sbjct: 522 ACKLLGQKMPKLNVEVIDERGAPDSRPESCPVE 554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 20/127 (15%), Positives = 44/127 (34%), Gaps = 26/127 (20%)

Query: 180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNG 239
           +L NL  L  L++G           +   + +    +R  +         L+ L +    
Sbjct: 217 DLPNLEKL-VLYVGVEDY--GFDGDMNVFRPL-FSKDRFPN---------LKWLGIVDAE 263

Query: 240 IS-----KMEGLSTLVNLHVLDVSSNKLT------LVDDIQNLSRLEDLWLNDNQI--ES 286
                         L  L  +D+S+  LT      L+D +  +  L+ + +  N +  E 
Sbjct: 264 EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323

Query: 287 LESIVEA 293
            + + ++
Sbjct: 324 KKELQKS 330

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	330
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.96
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.91
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.9
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.89
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.85
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.85
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.84
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.84
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.83
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.83
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.82
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.8
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.79
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.79
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.79
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.79
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.78
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.76
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.74
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.72
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.69
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.65
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.65
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.63
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.62
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.62
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.54
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.53
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.5
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.49
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.46
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.46
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.44
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.38
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.33
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.31
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.29
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.25
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.23
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.22
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.2
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.2
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.2
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.14
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.96
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.89
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.78
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.65
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.6
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.56
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.5
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.46
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.31
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.94
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.78
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.56
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.83

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=7.3e-34  Score=249.20  Aligned_cols=293  Identities=25%  Similarity=0.360  Sum_probs=259.5

Q ss_pred             ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161           22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  101 (330)
                      ..+++++|+++++.+..++.+..+++|++|++++|.+..++. +.++++|++|++++|.+...     ..+..+++|++|
T Consensus        42 ~l~~L~~L~l~~~~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~-----~~~~~l~~L~~L  115 (347)
T 4fmz_A           42 ELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDI-----SALQNLTNLREL  115 (347)
T ss_dssp             HHTTCSEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCSEE
T ss_pred             hcccccEEEEeCCccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCc-----hHHcCCCcCCEE
Confidence            567899999999999999888889999999999999999887 89999999999999988873     357789999999


Q ss_pred             EccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccc
Q 020161          102 ILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL  181 (330)
Q Consensus       102 ~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l  181 (330)
                      ++++|.+..++.+..+++|++|++++|...........+++|+.|++++|.+.....+..+++|++|++++|.+.....+
T Consensus       116 ~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  195 (347)
T 4fmz_A          116 YLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPL  195 (347)
T ss_dssp             ECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGGG
T ss_pred             ECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccccccc
Confidence            99999999888888999999999999965554444566899999999999998877789999999999999999877678


Q ss_pred             cCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCC
Q 020161          182 QNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN  260 (330)
Q Consensus       182 ~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n  260 (330)
                      ..+++|+.+++++|.+.+. .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+++++.+..+++|++|++++|
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n  275 (347)
T 4fmz_A          196 ASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSN  275 (347)
T ss_dssp             GGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred             cCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCC
Confidence            8999999999999998877 578889999999999999988778899999999999999999988999999999999999


Q ss_pred             CCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccccccccccCCCCC
Q 020161          261 KLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKY  327 (330)
Q Consensus       261 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~p~~  327 (330)
                      ++++++.+..+++|++|++++|++++.+   +..+..+++|+.|++++|++.+...    -+.+|++
T Consensus       276 ~l~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~L~~n~l~~~~~----~~~l~~L  335 (347)
T 4fmz_A          276 QISDISVLNNLSQLNSLFLNNNQLGNED---MEVIGGLTNLTTLFLSQNHITDIRP----LASLSKM  335 (347)
T ss_dssp             CCCCCGGGGGCTTCSEEECCSSCCCGGG---HHHHHTCTTCSEEECCSSSCCCCGG----GGGCTTC
T ss_pred             ccCCChhhcCCCCCCEEECcCCcCCCcC---hhHhhccccCCEEEccCCccccccC----hhhhhcc
Confidence            9999988899999999999999998653   4567789999999999999888754    3345554

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.3e-32  Score=241.27  Aligned_cols=281  Identities=22%  Similarity=0.326  Sum_probs=250.1

Q ss_pred             ccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161           20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (330)
Q Consensus        20 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~   99 (330)
                      +...+++++|+++++.+.+++....+++|++|++++|.+..++ .+.++++|++|++++|.+....     .+..+++|+
T Consensus        62 ~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~i~~~~-----~~~~l~~L~  135 (347)
T 4fmz_A           62 IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDNISDIS-----PLANLTKMY  135 (347)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSCCCCCG-----GGTTCTTCC
T ss_pred             hhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCcccCch-----hhccCCcee
Confidence            5668899999999999999888788899999999999999886 4899999999999999988742     267899999


Q ss_pred             EEEccCC-cCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc
Q 020161          100 ELILRDN-KLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM  178 (330)
Q Consensus       100 ~L~l~~~-~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~  178 (330)
                      +|++++| .+..++.+..+++|++|++++|.+..... ...+++|+.|++++|.+.....+..+++|+.+++++|.+...
T Consensus       136 ~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~  214 (347)
T 4fmz_A          136 SLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDI  214 (347)
T ss_dssp             EEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             EEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCC
Confidence            9999999 45556668899999999999999887766 455889999999999999887789999999999999999876


Q ss_pred             ccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEc
Q 020161          179 ENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV  257 (330)
Q Consensus       179 ~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l  257 (330)
                      ..+..+++|++|++++|.+... .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+++++.+..+++|++|++
T Consensus       215 ~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L  294 (347)
T 4fmz_A          215 TPVANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFL  294 (347)
T ss_dssp             GGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEEC
T ss_pred             chhhcCCcCCEEEccCCccCCCcchhcCCCCCEEECCCCccCCChhHhcCCCcCEEEccCCccCCChhhcCCCCCCEEEC
Confidence            6688999999999999998877 588899999999999999998888999999999999999999988999999999999


Q ss_pred             CCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161          258 SSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK  312 (330)
Q Consensus       258 ~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~  312 (330)
                      ++|++++.  ..+..+++|++|++++|++++++.     +..+++|+.|++++|+++
T Consensus       295 ~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          295 NNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-----LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             CSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-----GGGCTTCSEESSSCC---
T ss_pred             cCCcCCCcChhHhhccccCCEEEccCCccccccC-----hhhhhccceeehhhhccc
Confidence            99999876  568899999999999999997653     678999999999999975

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.8e-32  Score=248.34  Aligned_cols=284  Identities=25%  Similarity=0.358  Sum_probs=169.6

Q ss_pred             ccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161           20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (330)
Q Consensus        20 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~   99 (330)
                      +...+++++|+++++.+.+++....+++|++|++++|.+..+++ +..+++|++|++++|.+.+..     .+..+++|+
T Consensus        64 ~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~-----~~~~l~~L~  137 (466)
T 1o6v_A           64 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDID-----PLKNLTNLN  137 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCS
T ss_pred             hhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCCh-----HHcCCCCCC
Confidence            44567788888888888877666667788888888887777766 777777888887777766642     144455556


Q ss_pred             EEEccCCcCcCCCC---------------------CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCC----
Q 020161          100 ELILRDNKLMKIPD---------------------VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP----  154 (330)
Q Consensus       100 ~L~l~~~~l~~~~~---------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----  154 (330)
                      +|++++|.+..++.                     +..+++|++|++++|.+..+.. ...+++|+.|++++|.+.    
T Consensus       138 ~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~  216 (466)
T 1o6v_A          138 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP  216 (466)
T ss_dssp             EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG
T ss_pred             EEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc
Confidence            66555555443321                     2334455555555555544332 222444555555555444    


Q ss_pred             ------------------CcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCC
Q 020161          155 ------------------KMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQS  215 (330)
Q Consensus       155 ------------------~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~  215 (330)
                                        .+..+..+++|+.|++++|.+.....+..+++|++|++++|.+... .+..+++|+.|++++
T Consensus       217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  296 (466)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCccccccCCCccCeEEcCC
Confidence                              4444444455555555555544333345555555555555555444 345555566666666


Q ss_pred             CccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHh
Q 020161          216 NRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVA  295 (330)
Q Consensus       216 ~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  295 (330)
                      |.+++.+.+..+++|+.|++++|.+++++.+..+++|++|++++|++++.+.+..+++|+.|++++|+++++.   +  +
T Consensus       297 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~---~--~  371 (466)
T 1o6v_A          297 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLT---P--L  371 (466)
T ss_dssp             SCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG---G--G
T ss_pred             CcccCchhhcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccc---h--h
Confidence            6555555455566666666666666665545566666666666666666666666667777777777666543   1  4


Q ss_pred             ccccccchhhccCCCccccc
Q 020161          296 GSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       296 ~~~~~L~~l~l~~n~~~~~~  315 (330)
                      ..+++|+.|++++|++...+
T Consensus       372 ~~l~~L~~L~l~~n~~~~~p  391 (466)
T 1o6v_A          372 ANLTRITQLGLNDQAWTNAP  391 (466)
T ss_dssp             TTCTTCCEEECCCEEEECCC
T ss_pred             hcCCCCCEEeccCCcccCCc
Confidence            66677777777777666543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=4.9e-31  Score=240.17  Aligned_cols=282  Identities=27%  Similarity=0.378  Sum_probs=215.9

Q ss_pred             cCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      ..+++.|++.++.+..++....+++|++|++++|.+..+++ +.++++|++|++++|.+.+..     .+..+++|++|+
T Consensus        45 l~~l~~L~l~~~~i~~l~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-----~~~~l~~L~~L~  118 (466)
T 1o6v_A           45 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADIT-----PLANLTNLTGLT  118 (466)
T ss_dssp             HHTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-----GGTTCTTCCEEE
T ss_pred             hccccEEecCCCCCccCcchhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccCh-----hhcCCCCCCEEE
Confidence            46799999999999999988889999999999999999887 999999999999999998753     267899999999


Q ss_pred             ccCCcCcCCCCCCCCCcccEEEccCCCCcCcccc--------------------ccccCCCcEEEccCCCCCCcccccCC
Q 020161          103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL--------------------SNVTDTLKELYVSKNEVPKMEEIEHF  162 (330)
Q Consensus       103 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~~L~~L~l~~~~~~~~~~~~~~  162 (330)
                      +++|.++.++++..+++|++|++++|.+..++..                    ...+++|+.|++++|.+..+..+..+
T Consensus       119 L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l  198 (466)
T 1o6v_A          119 LFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKL  198 (466)
T ss_dssp             CCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGC
T ss_pred             CCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChhhccC
Confidence            9999999988888999999999999987765431                    11245566666666666665556666


Q ss_pred             CCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCC
Q 020161          163 HDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS  241 (330)
Q Consensus       163 ~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~  241 (330)
                      ++|++|++++|.+.....+..+++|++|++++|.+.+. .+..+++|+.|++++|.+++.+.+..++.|+.|++++|.++
T Consensus       199 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~  278 (466)
T 1o6v_A          199 TNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS  278 (466)
T ss_dssp             TTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCC
T ss_pred             CCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccC
Confidence            66666666666665444456666677777777666655 55566777777777777776655667777777777777777


Q ss_pred             CCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          242 KMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       242 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      +++.+..+++|+.|++++|++++.+.+..+++|+.|++++|++++++.     +..+++|+.|++++|++.+.+
T Consensus       279 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~l~~L~~L~l~~n~l~~~~  347 (466)
T 1o6v_A          279 NISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-----VSSLTKLQRLFFYNNKVSDVS  347 (466)
T ss_dssp             CCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-----GGGCTTCCEEECCSSCCCCCG
T ss_pred             ccccccCCCccCeEEcCCCcccCchhhcCCCCCCEEECcCCcCCCchh-----hccCccCCEeECCCCccCCch
Confidence            766677777777888877777777667777788888888887776542     466788888888888776653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.4e-30  Score=237.89  Aligned_cols=294  Identities=23%  Similarity=0.298  Sum_probs=234.8

Q ss_pred             cCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCCh-hhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161           23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~   99 (330)
                      ..++++|+++++.+.+++.  ...+++|++|++++|.+..+ +..|.++++|++|++++|.+....   ...|..+++|+
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~  107 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP---LGVFTGLSNLT  107 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC---TTSSTTCTTCC
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC---cccccCCCCCC
Confidence            4678899999888888754  44568899999999988876 456888899999999998887752   23456788899


Q ss_pred             EEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcc
Q 020161          100 ELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNR  174 (330)
Q Consensus       100 ~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~  174 (330)
                      +|++++|.+..+++  +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+..+  ..+..+++|+.|++++|.
T Consensus       108 ~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~  187 (477)
T 2id5_A          108 KLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN  187 (477)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCC
T ss_pred             EEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCc
Confidence            99999988886543  77888999999999888776543 33478899999999888774  347888899999999888


Q ss_pred             cccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc--C
Q 020161          175 LRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--G  245 (330)
Q Consensus       175 ~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~--~  245 (330)
                      +...  ..+..+++|+.|++++|.....   ......+|+.|++++|.++..+  .+..+++|+.|++++|.+++++  .
T Consensus       188 i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~  267 (477)
T 2id5_A          188 INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSM  267 (477)
T ss_dssp             CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTS
T ss_pred             CcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhh
Confidence            7533  3577888999999988764433   2333458999999999998875  4778999999999999999864  4


Q ss_pred             CCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccccccccc
Q 020161          246 LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQT  322 (330)
Q Consensus       246 ~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~  322 (330)
                      +..+++|++|++++|++++.  ..+..+++|++|++++|.++.++   +..+..+++|+.|++++|++.+.....|...
T Consensus       268 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~  343 (477)
T 2id5_A          268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE---ESVFHSVGNLETLILDSNPLACDCRLLWVFR  343 (477)
T ss_dssp             CTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC---GGGBSCGGGCCEEECCSSCEECSGGGHHHHT
T ss_pred             ccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC---HhHcCCCcccCEEEccCCCccCccchHhHHh
Confidence            78899999999999999987  56889999999999999999775   4567889999999999999876655555433

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=4.3e-30  Score=228.75  Aligned_cols=283  Identities=22%  Similarity=0.278  Sum_probs=177.9

Q ss_pred             cCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161           23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~   99 (330)
                      ..++++++++++.+..+|.  ...+++|++|++++|.+..++. .+..+++|++|++++|.+....+   ..+..+++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~  120 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP---HVFQNVPLLT  120 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT---TTTTTCTTCC
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH---HHhcCCCCCC
Confidence            3677888888888887775  2346788888888888887765 57788888888888888777532   3456678888


Q ss_pred             EEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc
Q 020161          100 ELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR  176 (330)
Q Consensus       100 ~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  176 (330)
                      +|++++|.++.+|.  +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+... .+..+++|+.+++++|.++
T Consensus       121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~L~~L~l~~n~l~  199 (390)
T 3o6n_A          121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLS  199 (390)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC-CGGGCTTCSEEECCSSCCS
T ss_pred             EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc-ccccccccceeeccccccc
Confidence            88888888887775  56788888888888887776543 33467888888888877664 2445566666666665543


Q ss_pred             cccc------------------ccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccc--cccccccccceEEc
Q 020161          177 VMEN------------------LQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYL  235 (330)
Q Consensus       177 ~~~~------------------l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l  235 (330)
                      ....                  ....++|+.|++++|.+.+. .+..+++|+.|++++|.+++.  ..+..+++|+.|++
T Consensus       200 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          200 TLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             EEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             ccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence            2110                  01123455555555554444 344455555555555555544  23445555555555


Q ss_pred             cCCCCCCCcC-CCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161          236 SHNGISKMEG-LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       236 ~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      ++|.+++++. ...+++|++|++++|+++.+ ..+..+++|++|++++|+++.++      +..+++|+.|++++|++.+
T Consensus       280 ~~n~l~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~------~~~~~~L~~L~l~~N~~~~  353 (390)
T 3o6n_A          280 SNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDWDC  353 (390)
T ss_dssp             CSSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCEEH
T ss_pred             CCCcCcccCcccCCCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC------chhhccCCEEEcCCCCccc
Confidence            5555555432 33455666666666665555 33455556666666666665542      4555666666666666555


Q ss_pred             cc
Q 020161          314 FK  315 (330)
Q Consensus       314 ~~  315 (330)
                      ..
T Consensus       354 ~~  355 (390)
T 3o6n_A          354 NS  355 (390)
T ss_dssp             HH
T ss_pred             hh
Confidence            43

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=3.5e-30  Score=233.94  Aligned_cols=288  Identities=19%  Similarity=0.267  Sum_probs=218.4

Q ss_pred             ccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCC-Chhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCC
Q 020161           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG   97 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~-~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   97 (330)
                      ..+++++|+++++.+.++++  ...+++|++|++++|.+. .++. .|.++++|++|++++|.+....+   ..+..+++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~~~l~~  104 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET---GAFNGLAN  104 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT---TTTTTCTT
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh---hhccCccc
Confidence            45788889998888887643  455788888888888876 4543 57888888888888888877533   34566888


Q ss_pred             CcEEEccCCcCcC--CCC--CCCCCcccEEEccCCCCcCcccc--ccccCCCcEEEccCCCCCCc--ccc----------
Q 020161           98 LEELILRDNKLMK--IPD--VSIFKKLSVFDVSFNEITSSHGL--SNVTDTLKELYVSKNEVPKM--EEI----------  159 (330)
Q Consensus        98 L~~L~l~~~~l~~--~~~--~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~--~~~----------  159 (330)
                      |++|++++|.+++  .+.  +..+++|++|++++|.+....+.  ...+++|+.|++++|.+.+.  ..+          
T Consensus       105 L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~  184 (455)
T 3v47_A          105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTL  184 (455)
T ss_dssp             CCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEE
T ss_pred             CCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccc
Confidence            8888888888875  222  67788888888888888776543  34478888888888876652  112          


Q ss_pred             ------------------------cCCCCccEEEcCCccccc--cccc--------------------------------
Q 020161          160 ------------------------EHFHDLQILEFGSNRLRV--MENL--------------------------------  181 (330)
Q Consensus       160 ------------------------~~~~~L~~L~l~~~~~~~--~~~l--------------------------------  181 (330)
                                              ..+++|++|++++|.+..  +..+                                
T Consensus       185 L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  264 (455)
T 3v47_A          185 LRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP  264 (455)
T ss_dssp             EECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCC
T ss_pred             cccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccC
Confidence                                    233567888888776531  0000                                


Q ss_pred             -----c--CCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCC--cCCC
Q 020161          182 -----Q--NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM--EGLS  247 (330)
Q Consensus       182 -----~--~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~--~~~~  247 (330)
                           .  ..++|+.|++++|.+.+.   .+..+++|+.|++++|.+++.+  .+..++.|+.|++++|.++++  ..+.
T Consensus       265 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  344 (455)
T 3v47_A          265 DNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFE  344 (455)
T ss_dssp             CTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGT
T ss_pred             cccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhc
Confidence                 0  125788888888887765   4777889999999999988773  577889999999999999876  3578


Q ss_pred             CCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          248 TLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       248 ~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      .+++|++|++++|++++.  ..+..+++|++|++++|+++.++   +..+..+++|+.|++++|++.+..
T Consensus       345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---TTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCC---HhHhccCCcccEEEccCCCcccCC
Confidence            899999999999999877  56888999999999999999765   345678899999999999976654

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.6e-29  Score=223.75  Aligned_cols=279  Identities=20%  Similarity=0.265  Sum_probs=219.9

Q ss_pred             ccccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccC
Q 020161           20 VEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALA   96 (330)
Q Consensus        20 ~~~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   96 (330)
                      +...+++++|+++++.+.+++.  ...+++|++|++++|.+..+++. +.++++|++|++++|.+....   ...|..++
T Consensus        65 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~---~~~~~~l~  141 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP---RGIFHNTP  141 (390)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCT
T ss_pred             hcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCC---HHHhcCCC
Confidence            4556889999999999988764  45578999999999999987654 889999999999999888642   23356789


Q ss_pred             CCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCc-------------------EEEccCCCCCC
Q 020161           97 GLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLK-------------------ELYVSKNEVPK  155 (330)
Q Consensus        97 ~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~-------------------~L~l~~~~~~~  155 (330)
                      +|++|++++|.+..+++  +..+++|++|++++|.+....  ...+++|+                   .|++++|.+..
T Consensus       142 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~  219 (390)
T 3o6n_A          142 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV  219 (390)
T ss_dssp             TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCE
T ss_pred             CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeee
Confidence            99999999999987764  788899999999999887653  22234444                   45555544444


Q ss_pred             cccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccccc-cccccccc
Q 020161          156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG-FEECIALE  231 (330)
Q Consensus       156 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~  231 (330)
                      .. ....++|+.|++++|.++....+..+++|++|++++|.+.+.   .+..+++|+.|++++|.++..+. ...+++|+
T Consensus       220 ~~-~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~  298 (390)
T 3o6n_A          220 VR-GPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK  298 (390)
T ss_dssp             EE-CCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCC
T ss_pred             cc-ccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCC
Confidence            31 123468999999999988778889999999999999998876   67889999999999999988853 45789999


Q ss_pred             eEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161          232 ELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       232 ~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~  310 (330)
                      .|++++|.++.++ .+..+++|++|++++|+++.++ +..+++|+.|++++|++...  .....+..   +....+..++
T Consensus       299 ~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N~~~~~--~~~~~~~~---~~~~~~~~~~  372 (390)
T 3o6n_A          299 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDCN--SLRALFRN---VARPAVDDAD  372 (390)
T ss_dssp             EEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEHH--HHHHHTTT---CCTTTBCCCC
T ss_pred             EEECCCCcceecCccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCCCccch--hHHHHHHH---HHhhcccccC
Confidence            9999999999874 4667899999999999999886 67889999999999999863  23344443   4444455554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.97  E-value=1e-28  Score=223.55  Aligned_cols=275  Identities=23%  Similarity=0.251  Sum_probs=183.0

Q ss_pred             cccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        21 ~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      ...+++++|+++++.+.+++.+..+++|++|++++|.+++++  +..+++|++|++++|.+.+.   +   +..+++|++
T Consensus        39 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~---~---~~~l~~L~~  110 (457)
T 3bz5_A           39 EQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNL---D---VTPLTKLTY  110 (457)
T ss_dssp             HHHTTCCEEECCSSCCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCC---C---CTTCTTCCE
T ss_pred             hHcCCCCEEEccCCCcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCcee---e---cCCCCcCCE
Confidence            345677888888888877776666778888888888887774  67778888888888877764   1   456777888


Q ss_pred             EEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccccc
Q 020161          101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMEN  180 (330)
Q Consensus       101 L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~  180 (330)
                      |++++|.++.++ +..+++|++|++++|.+.+++  ...+++|+.|++++|...+...+..+++|+.|++++|.++.++ 
T Consensus       111 L~L~~N~l~~l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~-  186 (457)
T 3bz5_A          111 LNCDTNKLTKLD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-  186 (457)
T ss_dssp             EECCSSCCSCCC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCC-
T ss_pred             EECCCCcCCeec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceec-
Confidence            888888777765 677778888888888777653  3345667777777774333224566667777777777665543 


Q ss_pred             ccCCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcC---------------
Q 020161          181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG---------------  245 (330)
Q Consensus       181 l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~---------------  245 (330)
                      +..+++|+.|++++|.+....+..+++|+.|++++|.+++.+ +..++.|+.|++++|.+++++.               
T Consensus       187 l~~l~~L~~L~l~~N~l~~~~l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~  265 (457)
T 3bz5_A          187 VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTD  265 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCC
T ss_pred             cccCCCCCEEECcCCcCCeeccccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCC
Confidence            556666666666666666666666666666666666666655 5556666666666666655420               


Q ss_pred             ----------------CCCCCCCCEEEcCCCCCCCc----------cccccCCCCCeEeCCCCCCCchHHHHHHHhcccc
Q 020161          246 ----------------LSTLVNLHVLDVSSNKLTLV----------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE  299 (330)
Q Consensus       246 ----------------~~~~~~L~~L~l~~n~~~~~----------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~  299 (330)
                                      ...+++|+.|++++|...+.          -.+..+++|++|++++|+++.++      +..|+
T Consensus       266 L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~------l~~l~  339 (457)
T 3bz5_A          266 LLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD------VSHNT  339 (457)
T ss_dssp             CSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC------CTTCT
T ss_pred             CCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc------cccCC
Confidence                            12234555555555542211          02455667788888888877652      56778


Q ss_pred             ccchhhccCCCcccc
Q 020161          300 TLTTIYLENNPCKIF  314 (330)
Q Consensus       300 ~L~~l~l~~n~~~~~  314 (330)
                      +|+.|++++|++.++
T Consensus       340 ~L~~L~l~~N~l~~l  354 (457)
T 3bz5_A          340 KLKSLSCVNAHIQDF  354 (457)
T ss_dssp             TCSEEECCSSCCCBC
T ss_pred             cCcEEECCCCCCCCc
Confidence            888888888887664

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.9e-29  Score=230.39  Aligned_cols=286  Identities=21%  Similarity=0.284  Sum_probs=243.9

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      ..+.+++++..+..+|. ..++++++|++++|.+..+++ .|.++++|++|++++|.+....   ...|..+++|++|++
T Consensus        12 ~~~~v~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L   87 (477)
T 2id5_A           12 QDRAVLCHRKRFVAVPE-GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE---PGAFNNLFNLRTLGL   87 (477)
T ss_dssp             TTTEEECCSCCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCcCCC-CCCCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC---hhhhhCCccCCEEEC
Confidence            34678999999999886 677899999999999998864 6999999999999999998863   345778999999999


Q ss_pred             cCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcccccc
Q 020161          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVM  178 (330)
Q Consensus       104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~  178 (330)
                      ++|.++.++.  +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+..+  ..+..+++|+.|++++|.++..
T Consensus        88 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  167 (477)
T 2id5_A           88 RSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI  167 (477)
T ss_dssp             CSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSC
T ss_pred             CCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCccc
Confidence            9999998875  68899999999999999877543 44489999999999998774  4688999999999999998744


Q ss_pred             --ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--CCCCC
Q 020161          179 --ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTL  249 (330)
Q Consensus       179 --~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~  249 (330)
                        ..+..+++|+.|++++|.+...   .+..+++|+.|++++|...+.  +......+|+.|++++|.+++++  .+..+
T Consensus       168 ~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l  247 (477)
T 2id5_A          168 PTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHL  247 (477)
T ss_dssp             CHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTC
T ss_pred             ChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCc
Confidence              3478899999999999988776   678889999999999865443  23334559999999999999886  57889


Q ss_pred             CCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccccc
Q 020161          250 VNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLF  317 (330)
Q Consensus       250 ~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~  317 (330)
                      ++|+.|++++|+++..  ..+..+++|++|++++|+++.+.   +..+..+++|+.|++++|.++.....
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~N~l~~~~~~  314 (477)
T 2id5_A          248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVE---PYAFRGLNYLRVLNVSGNQLTTLEES  314 (477)
T ss_dssp             TTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEEC---TTTBTTCTTCCEEECCSSCCSCCCGG
T ss_pred             cccCeeECCCCcCCccChhhccccccCCEEECCCCccceEC---HHHhcCcccCCEEECCCCcCceeCHh
Confidence            9999999999999977  45889999999999999999764   45678899999999999998876643

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=4.7e-29  Score=233.69  Aligned_cols=279  Identities=22%  Similarity=0.293  Sum_probs=169.6

Q ss_pred             CCCcEEeccCcccccCCCC--CCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           24 LSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~--~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      .+++.++++++.+..+|..  ..+++|++|++++|.+..+++ .|..+++|++|++++|.+.+..   ...|..+++|++
T Consensus        51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~  127 (597)
T 3oja_B           51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP---PHVFQNVPLLTV  127 (597)
T ss_dssp             CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCE
T ss_pred             CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC---HHHHcCCCCCCE
Confidence            4567777777777777652  335778888888887776655 5777778888888887777653   234556777888


Q ss_pred             EEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccc
Q 020161          101 LILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV  177 (330)
Q Consensus       101 L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  177 (330)
                      |++++|.++.+|.  +..+++|++|++++|.+..+++. ...+++|+.|++++|.+... .+..+++|+.+++++|.++.
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~l~~L~~L~l~~n~l~~  206 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-DLSLIPSLFHANVSYNLLST  206 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-CGGGCTTCSEEECCSSCCSE
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-ChhhhhhhhhhhcccCcccc
Confidence            8888877777765  46777788888888777766553 33467777888877776664 24445566666666655432


Q ss_pred             cccccCC---------------------CCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccc--cccccccccceE
Q 020161          178 MENLQNL---------------------TNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM--KGFEECIALEEL  233 (330)
Q Consensus       178 ~~~l~~~---------------------~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l  233 (330)
                      .   ...                     ++|+.|++++|.+.+. .+..+++|+.|++++|.+++.  ..+..+++|+.|
T Consensus       207 l---~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  283 (597)
T 3oja_B          207 L---AIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  283 (597)
T ss_dssp             E---ECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             c---cCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEE
Confidence            1   222                     3455555555544443 344455555555555555544  234455555555


Q ss_pred             EccCCCCCCCcC-CCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCc
Q 020161          234 YLSHNGISKMEG-LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC  311 (330)
Q Consensus       234 ~l~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~  311 (330)
                      ++++|.+++++. +..+++|+.|++++|.++.+ ..+..+++|+.|++++|+++.++      +..+++|+.|++++|++
T Consensus       284 ~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~------~~~~~~L~~L~l~~N~~  357 (597)
T 3oja_B          284 YISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK------LSTHHTLKNLTLSHNDW  357 (597)
T ss_dssp             ECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC------CCTTCCCSEEECCSSCE
T ss_pred             ECCCCCCCCCCcccccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC------hhhcCCCCEEEeeCCCC
Confidence            555555555432 23355566666666655555 33455555666666666655442      45556666666666665


Q ss_pred             cccc
Q 020161          312 KIFK  315 (330)
Q Consensus       312 ~~~~  315 (330)
                      .+..
T Consensus       358 ~~~~  361 (597)
T 3oja_B          358 DCNS  361 (597)
T ss_dssp             EHHH
T ss_pred             CChh
Confidence            5543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=5.6e-29  Score=233.92  Aligned_cols=284  Identities=26%  Similarity=0.332  Sum_probs=242.9

Q ss_pred             CCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           25 SNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      ++++++++++.+.+++.  ...+++|++|++++|.++.+|..+.++++|++|++++|.+....+   ..+..+++|++|+
T Consensus       255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~  331 (606)
T 3t6q_A          255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ---ISASNFPSLTHLS  331 (606)
T ss_dssp             EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGG---GCGGGCTTCSEEE
T ss_pred             ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCch---hhhhccCcCCEEE
Confidence            78999999999999876  445789999999999999999989999999999999999988633   3566789999999


Q ss_pred             ccCCcCc-CCCC--CCCCCcccEEEccCCCCcCcc---ccccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcc
Q 020161          103 LRDNKLM-KIPD--VSIFKKLSVFDVSFNEITSSH---GLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNR  174 (330)
Q Consensus       103 l~~~~l~-~~~~--~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~  174 (330)
                      +++|.+. .++.  +..+++|++|++++|.+....   .....+++|+.|++++|.+...  ..+..+++|++|++++|.
T Consensus       332 l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  411 (606)
T 3t6q_A          332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR  411 (606)
T ss_dssp             CCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC
T ss_pred             CCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc
Confidence            9999887 4553  788999999999999998764   2344589999999999988763  568889999999999998


Q ss_pred             cccc---ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc-----cccccccccceEEccCCCCCCC
Q 020161          175 LRVM---ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-----KGFEECIALEELYLSHNGISKM  243 (330)
Q Consensus       175 ~~~~---~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~L~~l~l~~~~~~~~  243 (330)
                      +...   ..+..+++|++|++++|.+...   .+..+++|++|++++|.+++.     ..+..+++|+.|++++|.++++
T Consensus       412 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~  491 (606)
T 3t6q_A          412 LKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI  491 (606)
T ss_dssp             EECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred             CCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence            8632   3378899999999999988765   577889999999999998763     3477899999999999999986


Q ss_pred             --cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          244 --EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       244 --~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                        ..+..+++|++|++++|++++.  ..+..++.| +|++++|+++.++   +..+..+++|+.+++++|++.+..
T Consensus       492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~---~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIIL---PSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCC---GGGHHHHHTSSEEECTTCCEECSG
T ss_pred             ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccC---HhhcccCCCCCEEeCCCCCccccC
Confidence              4688999999999999999977  578899999 9999999999664   445667899999999999976543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=1.7e-28  Score=213.52  Aligned_cols=282  Identities=22%  Similarity=0.312  Sum_probs=230.6

Q ss_pred             ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      ...++++++++++.+..+|. ..++++++|++++|.++.++. .+.++++|++|++++|.+....+   ..+..+++|++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~  104 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP---GAFAPLVKLER  104 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT---TTTTTCTTCCE
T ss_pred             CcCCCeEEEecCCCccccCc-cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH---HHhcCCCCCCE
Confidence            34578999999999998885 567899999999999998876 58999999999999999988643   45677999999


Q ss_pred             EEccCCcCcCCCCCCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCC----cccccCCCCccEEEcCCccc
Q 020161          101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGSNRL  175 (330)
Q Consensus       101 L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~~  175 (330)
                      |++++|.++.+|. ...++|++|++++|.+..+... ...+++|+.|++++|.+..    ...+..+++|++|++++|.+
T Consensus       105 L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          105 LYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             EECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCcCCccCh-hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            9999999998876 2238999999999999877654 3448899999999998854    35678899999999999998


Q ss_pred             cccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc-CCCCC
Q 020161          176 RVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME-GLSTL  249 (330)
Q Consensus       176 ~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~-~~~~~  249 (330)
                      +.++... .++|++|++++|.+...   .+..+++|+.|++++|.+++.+  .+..+++|+.|++++|.++.++ .+..+
T Consensus       184 ~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l  262 (330)
T 1xku_A          184 TTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH  262 (330)
T ss_dssp             CSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTC
T ss_pred             ccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccC
Confidence            6443211 27899999999998876   5788899999999999998774  5788999999999999999875 57888


Q ss_pred             CCCCEEEcCCCCCCCcc--ccc------cCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161          250 VNLHVLDVSSNKLTLVD--DIQ------NLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       250 ~~L~~L~l~~n~~~~~~--~~~------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~  310 (330)
                      ++|++|++++|+++.++  .+.      ..+.++.+++.+|++... ++.+..+..+++++.+++++|+
T Consensus       263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~-~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW-EIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG-GSCGGGGTTCCCGGGEEC----
T ss_pred             CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccccc-ccCccccccccceeEEEecccC
Confidence            99999999999998772  222      246889999999998753 2334568889999999999884

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=8.3e-29  Score=232.01  Aligned_cols=260  Identities=20%  Similarity=0.272  Sum_probs=213.0

Q ss_pred             ccccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccC
Q 020161           20 VEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALA   96 (330)
Q Consensus        20 ~~~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~   96 (330)
                      +...+++++|+++++.+.++++  ...+++|++|++++|.+..+++. |.++++|++|++++|.+....   ...|..++
T Consensus        71 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~---~~~~~~l~  147 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP---RGIFHNTP  147 (597)
T ss_dssp             HHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCT
T ss_pred             HccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCC---HHHhccCC
Confidence            4456789999999999998864  55678999999999999988764 789999999999999988752   23356789


Q ss_pred             CCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCC-------------------CC
Q 020161           97 GLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEV-------------------PK  155 (330)
Q Consensus        97 ~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------------------~~  155 (330)
                      +|++|++++|.++.+++  +..+++|++|++++|.+..++  ...+++|+.|++++|.+                   ..
T Consensus       148 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~  225 (597)
T 3oja_B          148 KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINV  225 (597)
T ss_dssp             TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCE
T ss_pred             CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC--hhhhhhhhhhhcccCccccccCCchhheeeccCCcccc
Confidence            99999999999998764  788999999999999887653  22245555555555544                   33


Q ss_pred             cccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccccc-cccccccc
Q 020161          156 MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG-FEECIALE  231 (330)
Q Consensus       156 ~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~  231 (330)
                      +.. ...++|+.|++++|.++.+..+..+++|+.|++++|.+.+.   .+..+++|+.|++++|.+++.+. +..+++|+
T Consensus       226 ~~~-~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~  304 (597)
T 3oja_B          226 VRG-PVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLK  304 (597)
T ss_dssp             EEC-SCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCC
T ss_pred             ccc-ccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCc
Confidence            211 22357889999999888778889999999999999998876   67889999999999999998854 45689999


Q ss_pred             eEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCc
Q 020161          232 ELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       232 ~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      .|++++|.++.++ .+..+++|+.|++++|.++..+ +..+++|+.|++++|++..
T Consensus       305 ~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~~-~~~~~~L~~L~l~~N~~~~  359 (597)
T 3oja_B          305 VLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHNDWDC  359 (597)
T ss_dssp             EEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSSCEEH
T ss_pred             EEECCCCCCCccCcccccCCCCCEEECCCCCCCCcC-hhhcCCCCEEEeeCCCCCC
Confidence            9999999999875 4677899999999999999885 6788999999999999985

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=5.2e-29  Score=226.16  Aligned_cols=285  Identities=21%  Similarity=0.281  Sum_probs=226.2

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCCh-hhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      ..+.+++++..+..+|.  .++++++|++++|.+..+ +..+.++++|++|++++|.+....  ....|..+++|++|++
T Consensus        11 ~~~~~~c~~~~l~~lp~--l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i--~~~~~~~l~~L~~L~L   86 (455)
T 3v47_A           11 IGYNAICINRGLHQVPE--LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI--RNNTFRGLSSLIILKL   86 (455)
T ss_dssp             ETTEEECCSSCCSSCCC--CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEE--CTTTTTTCTTCCEEEC
T ss_pred             EccccCcCCCCcccCCC--CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceE--CcccccccccCCEEeC
Confidence            34678889999999987  679999999999999987 556999999999999999887532  2345778999999999


Q ss_pred             cCCcCcCC-CC-CCCCCcccEEEccCCCCcCcc-cc--ccccCCCcEEEccCCCCCCc-c-c-ccCCCCccEEEcCCccc
Q 020161          104 RDNKLMKI-PD-VSIFKKLSVFDVSFNEITSSH-GL--SNVTDTLKELYVSKNEVPKM-E-E-IEHFHDLQILEFGSNRL  175 (330)
Q Consensus       104 ~~~~l~~~-~~-~~~~~~L~~L~l~~~~~~~~~-~~--~~~~~~L~~L~l~~~~~~~~-~-~-~~~~~~L~~L~l~~~~~  175 (330)
                      ++|.++.+ |. +..+++|++|++++|.+.+.. ..  ...+++|+.|++++|.+... . . +..+++|++|++++|.+
T Consensus        87 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l  166 (455)
T 3v47_A           87 DYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKV  166 (455)
T ss_dssp             TTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCB
T ss_pred             CCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcc
Confidence            99999876 33 888999999999999998632 21  44478999999999998874 2 2 78899999999999987


Q ss_pred             ccc--cccc----------------------------------CCCCCcEEECcCCCcccc---cc--------------
Q 020161          176 RVM--ENLQ----------------------------------NLTNLQELWLGRNRIKVV---NL--------------  202 (330)
Q Consensus       176 ~~~--~~l~----------------------------------~~~~L~~L~l~~~~i~~~---~~--------------  202 (330)
                      +..  ..+.                                  .+++|++|++++|.+.+.   .+              
T Consensus       167 ~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l  246 (455)
T 3v47_A          167 KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL  246 (455)
T ss_dssp             SCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEEC
T ss_pred             cccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEee
Confidence            522  2222                                  235678888888765432   00              


Q ss_pred             -----------------------C--CCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--CCCCCCCCC
Q 020161          203 -----------------------C--GLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLH  253 (330)
Q Consensus       203 -----------------------~--~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~  253 (330)
                                             .  ..++++.+++++|.+++.  ..+..+++|+.|++++|.+++++  .+..+++|+
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  326 (455)
T 3v47_A          247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLL  326 (455)
T ss_dssp             TTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             ccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCC
Confidence                                   0  125688888888877765  34678899999999999998863  678889999


Q ss_pred             EEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161          254 VLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL  316 (330)
Q Consensus       254 ~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  316 (330)
                      +|++++|++++.  ..+..+++|++|++++|+++.+.   +..+..+++|+.|++++|.+++.+.
T Consensus       327 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~L~~N~l~~~~~  388 (455)
T 3v47_A          327 KLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG---DQSFLGLPNLKELALDTNQLKSVPD  388 (455)
T ss_dssp             EEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             EEECCCCccCCcChhHhcCcccCCEEECCCCcccccC---hhhccccccccEEECCCCccccCCH
Confidence            999999999877  56788999999999999998653   4557888999999999999887653

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=5.5e-28  Score=227.16  Aligned_cols=293  Identities=21%  Similarity=0.237  Sum_probs=192.7

Q ss_pred             ccccCCCcEEeccCcccccC--CCCCCCCCcCEEecCCCCCCChh-hhhhcCCCCC--EEeCCCCcCCccccccc-----
Q 020161           20 VEIDLSNTVLDLTSFQLHDL--DSVEFPTNLTELDLTANRLTSLD-SRISHLSNLK--KLSLRQNLIDDAAIEPI-----   89 (330)
Q Consensus        20 ~~~~~~l~~l~l~~~~l~~~--~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~--~L~l~~~~~~~~~~~~~-----   89 (330)
                      +...+++++|+++++.+.++  +....+++|++|++++|.+..++ ..+..+++|+  .|++++|.+.+..+...     
T Consensus       125 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L  204 (606)
T 3t6q_A          125 LHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVF  204 (606)
T ss_dssp             CTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEE
T ss_pred             hccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccc
Confidence            34456677777777777665  33334677888888888777664 3477777777  77777776655432211     


Q ss_pred             -------------------------------------------------------------------hhhcccCCCcEEE
Q 020161           90 -------------------------------------------------------------------SRWDALAGLEELI  102 (330)
Q Consensus        90 -------------------------------------------------------------------~~~~~~~~L~~L~  102 (330)
                                                                                         ..|..+++|++|+
T Consensus       205 ~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  284 (606)
T 3t6q_A          205 QSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELD  284 (606)
T ss_dssp             EEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEE
T ss_pred             cccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEe
Confidence                                                                               1144456677777


Q ss_pred             ccCCcCcCCCC-CCCCCcccEEEccCCCCcCccc-cccccCCCcEEEccCCCCCC---cccccCCCCccEEEcCCccccc
Q 020161          103 LRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPK---MEEIEHFHDLQILEFGSNRLRV  177 (330)
Q Consensus       103 l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~  177 (330)
                      +++|.++.+|. +..+++|++|++++|.+....+ ....+++|+.|++++|.+..   ...+..+++|++|++++|.++.
T Consensus       285 l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  364 (606)
T 3t6q_A          285 LTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIET  364 (606)
T ss_dssp             CTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCE
T ss_pred             ccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccc
Confidence            77777666664 6666777777777777665543 23336667777777776543   1236667777777777776643


Q ss_pred             ----cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc---ccccccccceEEccCCCCCCC--cC
Q 020161          178 ----MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGISKM--EG  245 (330)
Q Consensus       178 ----~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~~~~~~--~~  245 (330)
                          +..+..+++|++|++++|.+...   .+..+++|+.|++++|.+++..   .+..+++|+.|++++|.+++.  ..
T Consensus       365 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~  444 (606)
T 3t6q_A          365 SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQL  444 (606)
T ss_dssp             EEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTT
T ss_pred             ccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHH
Confidence                23466777777777777776554   4566677777777777776541   256677778888877777664  34


Q ss_pred             CCCCCCCCEEEcCCCCCCCc-----cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          246 LSTLVNLHVLDVSSNKLTLV-----DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       246 ~~~~~~L~~L~l~~n~~~~~-----~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      +..+++|++|++++|++++.     ..+..+++|++|++++|.++.++   +..+..+++|+.|++++|++.+..
T Consensus       445 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~  516 (606)
T 3t6q_A          445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID---QHAFTSLKMMNHVDLSHNRLTSSS  516 (606)
T ss_dssp             TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCCGGG
T ss_pred             HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC---hhhhccccCCCEEECCCCccCcCC
Confidence            66777788888888877652     34667777777777777777543   344667777777777777766543

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2.9e-28  Score=212.24  Aligned_cols=279  Identities=21%  Similarity=0.262  Sum_probs=222.0

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      .++++++++++.+..+|. ..++++++|++++|.+..+++ .+.++++|++|++++|.+....   ...+..+++|++|+
T Consensus        33 c~l~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           33 CHLRVVQCSDLGLKAVPK-EISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH---EKAFSPLRKLQKLY  108 (332)
T ss_dssp             EETTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---GGGSTTCTTCCEEE
T ss_pred             ccCCEEECCCCCccccCC-CCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC---HhHhhCcCCCCEEE
Confidence            468999999999998886 456899999999999998865 6899999999999999998863   34567799999999


Q ss_pred             ccCCcCcCCCCCCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCC----cccccCCCCccEEEcCCccccc
Q 020161          103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGSNRLRV  177 (330)
Q Consensus       103 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~  177 (330)
                      +++|.++.+|.. ..++|++|++++|.+..++.. ...+++|+.|++++|.+..    ...+..+ +|+.|++++|.++.
T Consensus       109 L~~n~l~~l~~~-~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          109 ISKNHLVEIPPN-LPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG  186 (332)
T ss_dssp             CCSSCCCSCCSS-CCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred             CCCCcCCccCcc-ccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence            999999988862 228999999999999887764 3448899999999998853    2445555 89999999998864


Q ss_pred             cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc-CCCCCCC
Q 020161          178 MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME-GLSTLVN  251 (330)
Q Consensus       178 ~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~  251 (330)
                      ++.- -.++|++|++++|.+...   .+..+++|+.|++++|.+++.+  .+..+++|+.|++++|.++.++ .+..+++
T Consensus       187 l~~~-~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~  265 (332)
T 2ft3_A          187 IPKD-LPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL  265 (332)
T ss_dssp             CCSS-SCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTT
T ss_pred             cCcc-ccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCcc
Confidence            4321 126899999999988776   4778889999999999988874  4778899999999999999875 4778899


Q ss_pred             CCEEEcCCCCCCCc--ccccc------CCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161          252 LHVLDVSSNKLTLV--DDIQN------LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       252 L~~L~l~~n~~~~~--~~~~~------~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~  310 (330)
                      |++|++++|+++.+  ..+..      .+.|+.+++.+|++... +..+..+..+++|+.+++++|+
T Consensus       266 L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~-~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYW-EVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGG-GSCGGGGTTBCCSTTEEC----
T ss_pred             CCEEECCCCCCCccChhHccccccccccccccceEeecCccccc-ccCcccccccchhhhhhccccc
Confidence            99999999999876  22322      46788999999998733 2224667888999999998875

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.2e-27  Score=220.81  Aligned_cols=122  Identities=18%  Similarity=0.183  Sum_probs=93.5

Q ss_pred             CCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCCh-hhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      +++++|+++++.+.++++  ...+++|++|++++|.++.+ |..|.++++|++|++++|.+.....    .  .+++|++
T Consensus        21 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----~--~l~~L~~   94 (520)
T 2z7x_B           21 QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISC----H--PTVNLKH   94 (520)
T ss_dssp             TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEEC----C--CCCCCSE
T ss_pred             ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCc----c--ccCCccE
Confidence            789999999999988763  55678999999999999977 4568999999999999998885321    1  6899999


Q ss_pred             EEccCCcCcCC--CC-CCCCCcccEEEccCCCCcCccccccccCCC--cEEEccCCCC
Q 020161          101 LILRDNKLMKI--PD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL--KELYVSKNEV  153 (330)
Q Consensus       101 L~l~~~~l~~~--~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L--~~L~l~~~~~  153 (330)
                      |++++|.++.+  |. ++.+++|++|++++|.+....  ...+++|  +.|++++|.+
T Consensus        95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCGGG--GGGGTTSCEEEEEEEECTT
T ss_pred             EeccCCccccccchhhhccCCcceEEEecCcccchhh--ccccccceeeEEEeecccc
Confidence            99999998864  43 788999999999999876521  1223444  5555555444

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=1.2e-27  Score=222.22  Aligned_cols=151  Identities=24%  Similarity=0.302  Sum_probs=110.6

Q ss_pred             CCCCccEEEcCCccccc-----cccccCCCCCcEEECcCCCcccc-----ccCCCCcccEEECCCCcccccc-ccccccc
Q 020161          161 HFHDLQILEFGSNRLRV-----MENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQSNRLTSMK-GFEECIA  229 (330)
Q Consensus       161 ~~~~L~~L~l~~~~~~~-----~~~l~~~~~L~~L~l~~~~i~~~-----~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~  229 (330)
                      .+++|++|++++|.+..     ...+..+++|++|++++|.+...     .+..+++|++|++++|.++..+ .+..++.
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~  411 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK  411 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence            46677788888877652     12356778888888888887654     3677788888888888877664 3455667


Q ss_pred             cceEEccCCCCCCCcC-------------------CCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHH
Q 020161          230 LEELYLSHNGISKMEG-------------------LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI  290 (330)
Q Consensus       230 L~~l~l~~~~~~~~~~-------------------~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~  290 (330)
                      |+.|++++|.++.++.                   ...+++|++|++++|+++.++....+++|++|++++|++++++  
T Consensus       412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~~~l~~L~~L~Ls~N~l~~~~--  489 (549)
T 2z81_A          412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVP--  489 (549)
T ss_dssp             CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCGGGCTTCCEEECCSSCCCCCC--
T ss_pred             ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCcccCccCCEEecCCCccCCcC--
Confidence            7777777776654421                   1357788888888888887766677888999999999888654  


Q ss_pred             HHHHhccccccchhhccCCCcccc
Q 020161          291 VEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       291 ~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                       +..+..+++|+.|++++|++.+.
T Consensus       490 -~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          490 -DGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             -TTGGGGCTTCCEEECCSSCBCCC
T ss_pred             -HHHHhcCcccCEEEecCCCccCC
Confidence             45567889999999999996553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=2.1e-27  Score=221.13  Aligned_cols=103  Identities=23%  Similarity=0.344  Sum_probs=59.7

Q ss_pred             CCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChh-hhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      +++++|+++++.+.++++  ...+++|++|++++|.+++++ ..|.++++|++|++++|.+.....    .  .+++|++
T Consensus        52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~----~--~l~~L~~  125 (562)
T 3a79_B           52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISC----C--PMASLRH  125 (562)
T ss_dssp             TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECS----C--CCTTCSE
T ss_pred             CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCc----c--ccccCCE
Confidence            556666666666666542  334566666666666666553 345666666666666666654211    1  4566666


Q ss_pred             EEccCCcCcCCC---CCCCCCcccEEEccCCCCcC
Q 020161          101 LILRDNKLMKIP---DVSIFKKLSVFDVSFNEITS  132 (330)
Q Consensus       101 L~l~~~~l~~~~---~~~~~~~L~~L~l~~~~~~~  132 (330)
                      |++++|.++.++   .+..+++|++|++++|.+..
T Consensus       126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~  160 (562)
T 3a79_B          126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQ  160 (562)
T ss_dssp             EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCT
T ss_pred             EECCCCCccccCchHhhcccCcccEEecCCCcccc
Confidence            666666666543   25566666666666666543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=1.3e-27  Score=230.02  Aligned_cols=296  Identities=19%  Similarity=0.224  Sum_probs=179.2

Q ss_pred             CcccccccCCCcEEeccCccccc------------------CCC-CC--CCCCcCEEecCCCCCC-ChhhhhhcCCCCCE
Q 020161           16 PDQAVEIDLSNTVLDLTSFQLHD------------------LDS-VE--FPTNLTELDLTANRLT-SLDSRISHLSNLKK   73 (330)
Q Consensus        16 ~~~~~~~~~~l~~l~l~~~~l~~------------------~~~-~~--~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~   73 (330)
                      ++..+...+++++|+++++.+.+                  +|. +.  .+++|++|++++|.+. .+|..+.++++|++
T Consensus       440 IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~  519 (876)
T 4ecn_A          440 ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQS  519 (876)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCE
T ss_pred             hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCE
Confidence            44556667888888888888888                  664 33  4688888888888766 67777888888888


Q ss_pred             EeCCCCc-CCc-cccccchh----hcccCCCcEEEccCCcCcCCCC---CCCCCcccEEEccCCCCcCccccccccCCCc
Q 020161           74 LSLRQNL-IDD-AAIEPISR----WDALAGLEELILRDNKLMKIPD---VSIFKKLSVFDVSFNEITSSHGLSNVTDTLK  144 (330)
Q Consensus        74 L~l~~~~-~~~-~~~~~~~~----~~~~~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~  144 (330)
                      |++++|. +++ ..|..+..    +..+++|++|++++|.++.+|.   +..+++|++|++++|.+..++ ....+++|+
T Consensus       520 L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~  598 (876)
T 4ecn_A          520 LNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLT  598 (876)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEES
T ss_pred             EECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcce
Confidence            8888887 665 43332222    1234467777777776666665   566666666666666666444 333355666


Q ss_pred             EEEccCCCCCCc-ccccCCCC-ccEEEcCCcccccc-ccccC-------------------------------CCCCcEE
Q 020161          145 ELYVSKNEVPKM-EEIEHFHD-LQILEFGSNRLRVM-ENLQN-------------------------------LTNLQEL  190 (330)
Q Consensus       145 ~L~l~~~~~~~~-~~~~~~~~-L~~L~l~~~~~~~~-~~l~~-------------------------------~~~L~~L  190 (330)
                      .|++++|.+..+ ..+..+++ |+.|++++|.++.+ ..+..                               +++|+.|
T Consensus       599 ~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L  678 (876)
T 4ecn_A          599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTV  678 (876)
T ss_dssp             EEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEE
T ss_pred             EEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEE
Confidence            666666665543 23455555 66666666555322 11222                               2245555


Q ss_pred             ECcCCCcccc---ccCCCCcccEEECCCCccccccc---------cccccccceEEccCCCCCCCcC-CC--CCCCCCEE
Q 020161          191 WLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG---------FEECIALEELYLSHNGISKMEG-LS--TLVNLHVL  255 (330)
Q Consensus       191 ~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~---------~~~~~~L~~l~l~~~~~~~~~~-~~--~~~~L~~L  255 (330)
                      ++++|.+...   .+..+++|+.|++++|.++..+.         +..+++|+.|++++|.++.++. +.  .+++|+.|
T Consensus       679 ~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L  758 (876)
T 4ecn_A          679 TLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNM  758 (876)
T ss_dssp             ECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEE
T ss_pred             EccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEE
Confidence            5555554433   12345566666666666654432         1123367777777776666542 33  56677777


Q ss_pred             EcCCCCCCCc-cccccCCCCCeEeCCC------CCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          256 DVSSNKLTLV-DDIQNLSRLEDLWLND------NQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       256 ~l~~n~~~~~-~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      ++++|+++++ ..+..+++|+.|++++      |.+..   .++..+.++++|+.|+|++|++..++
T Consensus       759 ~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~---~ip~~l~~L~~L~~L~Ls~N~L~~Ip  822 (876)
T 4ecn_A          759 DVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILR---QWPTGITTCPSLIQLQIGSNDIRKVD  822 (876)
T ss_dssp             ECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCC---CCCTTGGGCSSCCEEECCSSCCCBCC
T ss_pred             EeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccc---cChHHHhcCCCCCEEECCCCCCCccC
Confidence            7777777666 4556677777777765      44331   22344566777777777777775554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=1.9e-27  Score=223.46  Aligned_cols=133  Identities=20%  Similarity=0.206  Sum_probs=89.2

Q ss_pred             ccCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC--C-cCCCCCCC
Q 020161          181 LQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK--M-EGLSTLVN  251 (330)
Q Consensus       181 l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~--~-~~~~~~~~  251 (330)
                      +..+++|+.|++++|.+.+.    .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++  + ..+..+++
T Consensus       395 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  474 (606)
T 3vq2_A          395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTN  474 (606)
T ss_dssp             CTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCC
Confidence            44445555555555544433    344556666666666665544  235566777777777777665  2 34677788


Q ss_pred             CCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161          252 LHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL  316 (330)
Q Consensus       252 L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  316 (330)
                      |++|++++|++++.  ..+..+++|++|++++|+++++.   +..+..+++|+.|++++|++..++.
T Consensus       475 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~l~~N~l~~~p~  538 (606)
T 3vq2_A          475 LTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD---SSHYNQLYSLSTLDCSFNRIETSKG  538 (606)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE---GGGTTTCTTCCEEECTTSCCCCEES
T ss_pred             CCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC---HHHccCCCcCCEEECCCCcCcccCH
Confidence            88888888888766  45777888888888888888653   4556778888888888888876654

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=7.3e-28  Score=226.96  Aligned_cols=297  Identities=16%  Similarity=0.177  Sum_probs=179.3

Q ss_pred             CcccccccCCCcEEeccCccccc------------------CCC-CC--CCCCcCEEecCCCCCC-ChhhhhhcCCCCCE
Q 020161           16 PDQAVEIDLSNTVLDLTSFQLHD------------------LDS-VE--FPTNLTELDLTANRLT-SLDSRISHLSNLKK   73 (330)
Q Consensus        16 ~~~~~~~~~~l~~l~l~~~~l~~------------------~~~-~~--~~~~L~~L~l~~~~i~-~l~~~~~~l~~L~~   73 (330)
                      ++..+....++++|+++++.+.+                  +|. +.  .+++|++|++++|.+. .+|..+.++++|++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  277 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQL  277 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCE
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCE
Confidence            34455666778888888888877                  653 33  4677888888888766 56666777888888


Q ss_pred             EeCCCCc-CCc-cccccchhh---cccCCCcEEEccCCcCcCCCC---CCCCCcccEEEccCCCCc-CccccccccCCCc
Q 020161           74 LSLRQNL-IDD-AAIEPISRW---DALAGLEELILRDNKLMKIPD---VSIFKKLSVFDVSFNEIT-SSHGLSNVTDTLK  144 (330)
Q Consensus        74 L~l~~~~-~~~-~~~~~~~~~---~~~~~L~~L~l~~~~l~~~~~---~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~L~  144 (330)
                      |++++|. +++ ..|..+..+   ..+++|++|++++|.++.+|.   +..+++|++|++++|.+. .++ ....+++|+
T Consensus       278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~  356 (636)
T 4eco_A          278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLA  356 (636)
T ss_dssp             EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEES
T ss_pred             EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCC
Confidence            8888876 665 433332221   223667777777766666664   566666666666666665 333 222244444


Q ss_pred             EEEccCCCCCCc-ccccCCC--------------------------CccEEEcCCccccc--ccccc-------CCCCCc
Q 020161          145 ELYVSKNEVPKM-EEIEHFH--------------------------DLQILEFGSNRLRV--MENLQ-------NLTNLQ  188 (330)
Q Consensus       145 ~L~l~~~~~~~~-~~~~~~~--------------------------~L~~L~l~~~~~~~--~~~l~-------~~~~L~  188 (330)
                      .|++++|.+..+ ..+..++                          +|+.|++++|.++.  +..+.       .+++|+
T Consensus       357 ~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~  436 (636)
T 4eco_A          357 SLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVS  436 (636)
T ss_dssp             EEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEE
T ss_pred             EEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCC
Confidence            454444444332 2233333                          45555555554431  12233       444666


Q ss_pred             EEECcCCCcccc---ccCCCCcccEEECCCCccccccc--cc-------cccccceEEccCCCCCCCcC-CC--CCCCCC
Q 020161          189 ELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--FE-------ECIALEELYLSHNGISKMEG-LS--TLVNLH  253 (330)
Q Consensus       189 ~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~--~~-------~~~~L~~l~l~~~~~~~~~~-~~--~~~~L~  253 (330)
                      .|++++|.+...   .+..+++|+.|++++|.++..+.  +.       .+++|+.|++++|.++.++. +.  .+++|+
T Consensus       437 ~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~  516 (636)
T 4eco_A          437 SINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLV  516 (636)
T ss_dssp             EEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCC
T ss_pred             EEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcC
Confidence            666666665544   13345667777777776665432  11       22377777777777776642 33  677788


Q ss_pred             EEEcCCCCCCCc-cccccCCCCCeEeCCC------CCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161          254 VLDVSSNKLTLV-DDIQNLSRLEDLWLND------NQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL  316 (330)
Q Consensus       254 ~L~l~~n~~~~~-~~~~~~~~L~~L~l~~------n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  316 (330)
                      +|++++|+++++ ..+..+++|+.|++++      |++..   .++..+..+++|+.|++++|.++.++.
T Consensus       517 ~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~---~~p~~l~~l~~L~~L~Ls~N~l~~ip~  583 (636)
T 4eco_A          517 GIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLR---EWPEGITLCPSLTQLQIGSNDIRKVNE  583 (636)
T ss_dssp             EEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCC---CCCTTGGGCSSCCEEECCSSCCCBCCS
T ss_pred             EEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccc---cChHHHhcCCCCCEEECCCCcCCccCH
Confidence            888888877776 4566777888888743      44442   223445677888888888888766543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.96  E-value=8.7e-28  Score=226.46  Aligned_cols=287  Identities=15%  Similarity=0.189  Sum_probs=200.3

Q ss_pred             ccCCCcEEeccCcccccC-C-CCCCCCCcCEEecCCCC-CCC--hhhhhhcC------CCCCEEeCCCCcCCccccccch
Q 020161           22 IDLSNTVLDLTSFQLHDL-D-SVEFPTNLTELDLTANR-LTS--LDSRISHL------SNLKKLSLRQNLIDDAAIEPIS   90 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~-~-~~~~~~~L~~L~l~~~~-i~~--l~~~~~~l------~~L~~L~l~~~~~~~~~~~~~~   90 (330)
                      ...++++|+++++.+.+. | .+..+++|++|++++|. +++  +|..+..+      ++|++|++++|.++. .|. ..
T Consensus       247 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~-ip~-~~  324 (636)
T 4eco_A          247 NLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT-FPV-ET  324 (636)
T ss_dssp             GCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS-CCC-HH
T ss_pred             ccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc-cCc-hh
Confidence            567777888877776553 3 23445677777777776 663  66555554      666666666666653 211 01


Q ss_pred             hhcccCCCcEEEccCCcCc-----------------------CCCC-CCCCCc-ccEEEccCCCCcCccccccc--cCCC
Q 020161           91 RWDALAGLEELILRDNKLM-----------------------KIPD-VSIFKK-LSVFDVSFNEITSSHGLSNV--TDTL  143 (330)
Q Consensus        91 ~~~~~~~L~~L~l~~~~l~-----------------------~~~~-~~~~~~-L~~L~l~~~~~~~~~~~~~~--~~~L  143 (330)
                      .+..+++|++|++++|.++                       .+|. +..+++ |++|++++|.+..++.....  +++|
T Consensus       325 ~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L  404 (636)
T 4eco_A          325 SLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVM  404 (636)
T ss_dssp             HHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCE
T ss_pred             hhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCcc
Confidence            3444555555555555554                       3433 444555 66666666666655543333  2367


Q ss_pred             cEEEccCCCCCCc--cccc-------CCCCccEEEcCCccccccc-c-ccCCCCCcEEECcCCCccccccCCC-------
Q 020161          144 KELYVSKNEVPKM--EEIE-------HFHDLQILEFGSNRLRVME-N-LQNLTNLQELWLGRNRIKVVNLCGL-------  205 (330)
Q Consensus       144 ~~L~l~~~~~~~~--~~~~-------~~~~L~~L~l~~~~~~~~~-~-l~~~~~L~~L~l~~~~i~~~~~~~~-------  205 (330)
                      +.|++++|.+.+.  ..+.       .+++|++|++++|.++.++ . +..+++|++|++++|.+...+....       
T Consensus       405 ~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~  484 (636)
T 4eco_A          405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENF  484 (636)
T ss_dssp             EEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEEC
T ss_pred             CEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccc
Confidence            7777777776652  3344       6679999999999987442 2 4568999999999999886632222       


Q ss_pred             ---CcccEEECCCCccccccc-cc--cccccceEEccCCCCCCCc-CCCCCCCCCEEEcCC------CCCCCc--ccccc
Q 020161          206 ---KCIKKISLQSNRLTSMKG-FE--ECIALEELYLSHNGISKME-GLSTLVNLHVLDVSS------NKLTLV--DDIQN  270 (330)
Q Consensus       206 ---~~L~~L~l~~~~l~~~~~-~~--~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~------n~~~~~--~~~~~  270 (330)
                         ++|+.|++++|.++..+. +.  .+++|+.|++++|.+++++ .+..+++|++|++++      |++.+.  ..+..
T Consensus       485 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~  564 (636)
T 4eco_A          485 KNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL  564 (636)
T ss_dssp             TTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred             cccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence               289999999999997753 43  8899999999999999974 577899999999954      555544  57889


Q ss_pred             CCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161          271 LSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL  316 (330)
Q Consensus       271 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  316 (330)
                      +++|++|++++|+++.++..    +  .++|+.|++++|++.+.+.
T Consensus       565 l~~L~~L~Ls~N~l~~ip~~----~--~~~L~~L~Ls~N~l~~~~~  604 (636)
T 4eco_A          565 CPSLTQLQIGSNDIRKVNEK----I--TPNISVLDIKDNPNISIDL  604 (636)
T ss_dssp             CSSCCEEECCSSCCCBCCSC----C--CTTCCEEECCSCTTCEEEC
T ss_pred             CCCCCEEECCCCcCCccCHh----H--hCcCCEEECcCCCCccccH
Confidence            99999999999999887632    2  2899999999999887664

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=5.4e-28  Score=232.74  Aligned_cols=217  Identities=22%  Similarity=0.253  Sum_probs=132.8

Q ss_pred             ccCCCcEEEccCCcCcC-CCC-CCCCCcccEEEccCCCCcCcc-ccccccCCCcEEEccCCCCCC--cccccCCCCccEE
Q 020161           94 ALAGLEELILRDNKLMK-IPD-VSIFKKLSVFDVSFNEITSSH-GLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQIL  168 (330)
Q Consensus        94 ~~~~L~~L~l~~~~l~~-~~~-~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L  168 (330)
                      .+++|++|++++|.+++ +|. +..+++|++|++++|.+.+.. .....+++|+.|++++|.+.+  +..+..+++|++|
T Consensus       416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L  495 (768)
T 3rgz_A          416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI  495 (768)
T ss_dssp             GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred             cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence            34444455555444442 222 444455555555555554322 222335566666666666554  2345666666666


Q ss_pred             EcCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc-c--------------------
Q 020161          169 EFGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM-K--------------------  222 (330)
Q Consensus       169 ~l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~-~--------------------  222 (330)
                      ++++|.+.  .+..+..+++|+.|++++|.+.+.   .+..+++|+.|++++|.+++. |                    
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~  575 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY  575 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence            66666664  334566666777777777766543   456667777777777655421 1                    


Q ss_pred             ---------------------------------------------------ccccccccceEEccCCCCCCC--cCCCCC
Q 020161          223 ---------------------------------------------------GFEECIALEELYLSHNGISKM--EGLSTL  249 (330)
Q Consensus       223 ---------------------------------------------------~~~~~~~L~~l~l~~~~~~~~--~~~~~~  249 (330)
                                                                         .+..++.|+.|++++|.+++.  +.+..+
T Consensus       576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l  655 (768)
T 3rgz_A          576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM  655 (768)
T ss_dssp             EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred             cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence                                                               112245677777777777753  346777


Q ss_pred             CCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161          250 VNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       250 ~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      ++|+.|++++|++++.  ..++.+++|+.||+++|+++   +.++..+..+++|+.|++++|++.+
T Consensus       656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~---g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD---GRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE---ECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc---CcCChHHhCCCCCCEEECcCCcccc
Confidence            7888888888888755  56778888888888888877   2334556777888888888888654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.96  E-value=2.6e-27  Score=220.96  Aligned_cols=172  Identities=22%  Similarity=0.280  Sum_probs=119.4

Q ss_pred             cCCCcEEEccCCCCCCc----ccccCCCCccEEEcCCccccc-cccccCCCCCcEEECcCCCcccc----ccCCCCcccE
Q 020161          140 TDTLKELYVSKNEVPKM----EEIEHFHDLQILEFGSNRLRV-MENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKK  210 (330)
Q Consensus       140 ~~~L~~L~l~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~  210 (330)
                      +++|+.|++++|.+...    ..+..+++|++|++++|.+.. +..+..+++|++|++++|.+...    .+..+++|++
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  425 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY  425 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred             CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence            34455555555544432    224455566666666665532 23356667777777777765543    3566677888


Q ss_pred             EECCCCccccc--cccccccccceEEccCCCCCC--C-cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCC
Q 020161          211 ISLQSNRLTSM--KGFEECIALEELYLSHNGISK--M-EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQ  283 (330)
Q Consensus       211 L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~--~-~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~  283 (330)
                      |++++|.+++.  ..+..+++|+.|++++|.+++  + ..+..+++|++|++++|++++.  ..+..+++|++|++++|+
T Consensus       426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             EECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence            88888777655  346678888888888888762  3 4577888999999999988877  467788999999999999


Q ss_pred             CCchHHHHHHHhccccccchhhccCCCcccc
Q 020161          284 IESLESIVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       284 l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      +++++   +..+.++++|+.|++++|++.+.
T Consensus       506 l~~~~---~~~~~~l~~L~~L~l~~N~~~~~  533 (570)
T 2z63_A          506 LKSVP---DGIFDRLTSLQKIWLHTNPWDCS  533 (570)
T ss_dssp             CSCCC---TTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCCC---HHHhhcccCCcEEEecCCcccCC
Confidence            88664   45577889999999999997654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=3.9e-26  Score=206.70  Aligned_cols=278  Identities=24%  Similarity=0.276  Sum_probs=179.3

Q ss_pred             ccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161           20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (330)
Q Consensus        20 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~   99 (330)
                      +...+++++|+++++.+.+++ ...+++|++|++++|.++.++  +.++++|++|++++|.+.+.   +   +..+++|+
T Consensus        60 l~~l~~L~~L~Ls~n~l~~~~-~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l---~---~~~l~~L~  130 (457)
T 3bz5_A           60 IEKLTGLTKLICTSNNITTLD-LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKL---D---VSQNPLLT  130 (457)
T ss_dssp             GGGCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCC---C---CTTCTTCC
T ss_pred             hcccCCCCEEEccCCcCCeEc-cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCee---c---CCCCCcCC
Confidence            556788999999999988876 667788999999999888874  77888999999998888774   1   45678888


Q ss_pred             EEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccc
Q 020161          100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME  179 (330)
Q Consensus       100 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  179 (330)
                      +|++++|.++.++ +..+++|++|++++|...+... ...+++|+.|++++|.+.+++ +..+++|+.|++++|.++.. 
T Consensus       131 ~L~l~~N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n~l~~l~-l~~l~~L~~L~l~~N~l~~~-  206 (457)
T 3bz5_A          131 YLNCARNTLTEID-VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFNKITELD-VSQNKLLNRLNCDTNNITKL-  206 (457)
T ss_dssp             EEECTTSCCSCCC-CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSSCCCCCC-CTTCTTCCEEECCSSCCSCC-
T ss_pred             EEECCCCccceec-cccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCCccceec-cccCCCCCEEECcCCcCCee-
Confidence            8888888877764 5666666666666663222111 222455555555555555533 44455555555555544433 


Q ss_pred             cccCCCCCcEEECcCCCccccccCCCCcccEEECCCCcccccc-------------------------------cccccc
Q 020161          180 NLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK-------------------------------GFEECI  228 (330)
Q Consensus       180 ~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~-------------------------------~~~~~~  228 (330)
                      .+..+++|+.|++++|.+.+.++..+++|+.|++++|.+++.+                               .+..++
T Consensus       207 ~l~~l~~L~~L~Ls~N~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~  286 (457)
T 3bz5_A          207 DLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCR  286 (457)
T ss_dssp             CCTTCTTCSEEECCSSCCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCT
T ss_pred             ccccCCCCCEEECcCCcccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccc
Confidence            2444444555555554444444444444444444444443321                               123457


Q ss_pred             ccceEEccCCCCCC-Cc---------CCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHH----
Q 020161          229 ALEELYLSHNGISK-ME---------GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAV----  294 (330)
Q Consensus       229 ~L~~l~l~~~~~~~-~~---------~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~----  294 (330)
                      .|+.|++++|...+ ++         .+..+++|+.|++++|++++++ +..+++|+.|++++|++++++... ..    
T Consensus       287 ~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~-l~~l~~L~~L~l~~N~l~~l~~L~-~L~l~~  364 (457)
T 3bz5_A          287 KIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD-VSHNTKLKSLSCVNAHIQDFSSVG-KIPALN  364 (457)
T ss_dssp             TCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC-CTTCTTCSEEECCSSCCCBCTTGG-GSSGGG
T ss_pred             cCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc-cccCCcCcEEECCCCCCCCccccc-cccccC
Confidence            77888887775432 11         2667789999999999999985 889999999999999998753211 00    


Q ss_pred             -----hccccccchhhccCCCcc
Q 020161          295 -----AGSRETLTTIYLENNPCK  312 (330)
Q Consensus       295 -----~~~~~~L~~l~l~~n~~~  312 (330)
                           ..++..|..+++++|.++
T Consensus       365 n~l~g~~~~~~l~~l~l~~N~l~  387 (457)
T 3bz5_A          365 NNFEAEGQTITMPKETLTNNSLT  387 (457)
T ss_dssp             TSEEEEEEEEECCCBCCBTTBEE
T ss_pred             CcEEecceeeecCccccccCcEE
Confidence                 012345566666666654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.96  E-value=3e-27  Score=227.44  Aligned_cols=290  Identities=15%  Similarity=0.165  Sum_probs=196.1

Q ss_pred             ccCCCcEEeccCcccccC-C-CCCCCCCcCEEecCCCC-CCC--hhhhhhcCC-------CCCEEeCCCCcCCccccccc
Q 020161           22 IDLSNTVLDLTSFQLHDL-D-SVEFPTNLTELDLTANR-LTS--LDSRISHLS-------NLKKLSLRQNLIDDAAIEPI   89 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~-~-~~~~~~~L~~L~l~~~~-i~~--l~~~~~~l~-------~L~~L~l~~~~~~~~~~~~~   89 (330)
                      ..+++++|++++|.+.+. | .+..+++|++|++++|. ++.  +|..+..++       +|++|++++|.+.. .|. .
T Consensus       489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~-ip~-~  566 (876)
T 4ecn_A          489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPA-S  566 (876)
T ss_dssp             GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCB-CCC-H
T ss_pred             cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCc-cCC-h
Confidence            566777777777765543 3 23345677777777776 664  555444443       67777777776663 211 0


Q ss_pred             hhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCC-CcEEEccCCCCCCccc-cc-------
Q 020161           90 SRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT-LKELYVSKNEVPKMEE-IE-------  160 (330)
Q Consensus        90 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~-~~-------  160 (330)
                      ..+..+++|++|++++|.++.+|.+..+++|++|++++|.+..++.....+++ |+.|++++|.+..++. +.       
T Consensus       567 ~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L  646 (876)
T 4ecn_A          567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVM  646 (876)
T ss_dssp             HHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCE
T ss_pred             hhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCC
Confidence            13455666666666666666666556666666666666666554443344444 5555555554443211 11       


Q ss_pred             ------------------------CCCCccEEEcCCcccccc-cc-ccCCCCCcEEECcCCCcccccc---C-------C
Q 020161          161 ------------------------HFHDLQILEFGSNRLRVM-EN-LQNLTNLQELWLGRNRIKVVNL---C-------G  204 (330)
Q Consensus       161 ------------------------~~~~L~~L~l~~~~~~~~-~~-l~~~~~L~~L~l~~~~i~~~~~---~-------~  204 (330)
                                              .+++|+.|++++|.++.+ .. +..+++|+.|++++|.+...+.   .       .
T Consensus       647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~n  726 (876)
T 4ecn_A          647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKN  726 (876)
T ss_dssp             EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTT
T ss_pred             CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccc
Confidence                                    223677777777776533 22 3478899999999999886622   2       2


Q ss_pred             CCcccEEECCCCccccccc-cc--cccccceEEccCCCCCCCc-CCCCCCCCCEEEcCC------CCCCCc--cccccCC
Q 020161          205 LKCIKKISLQSNRLTSMKG-FE--ECIALEELYLSHNGISKME-GLSTLVNLHVLDVSS------NKLTLV--DDIQNLS  272 (330)
Q Consensus       205 ~~~L~~L~l~~~~l~~~~~-~~--~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~------n~~~~~--~~~~~~~  272 (330)
                      +++|+.|++++|.++..+. +.  .+++|+.|++++|.+++++ .+..+++|+.|++++      |++.+.  ..+..++
T Consensus       727 l~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~  806 (876)
T 4ecn_A          727 TYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP  806 (876)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred             cCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence            2389999999999997753 43  7899999999999999975 577899999999987      555544  5788999


Q ss_pred             CCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccccccc
Q 020161          273 RLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCY  319 (330)
Q Consensus       273 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~  319 (330)
                      +|+.|++++|+++.++..    +  .++|+.|+|++|++..+..-.+
T Consensus       807 ~L~~L~Ls~N~L~~Ip~~----l--~~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          807 SLIQLQIGSNDIRKVDEK----L--TPQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             SCCEEECCSSCCCBCCSC----C--CSSSCEEECCSCTTCEEECGGG
T ss_pred             CCCEEECCCCCCCccCHh----h--cCCCCEEECCCCCCCccChHHc
Confidence            999999999999877632    2  2799999999999877664433

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=1e-26  Score=202.30  Aligned_cols=259  Identities=23%  Similarity=0.343  Sum_probs=219.1

Q ss_pred             CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCC-CC-CCCCCcccEE
Q 020161           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI-PD-VSIFKKLSVF  123 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~-~~~~~~L~~L  123 (330)
                      .+++.++++++.++.+|..+  .++|++|++++|.+.+..   ...+..+++|++|++++|.++.+ |. +..+++|++|
T Consensus        31 c~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (330)
T 1xku_A           31 CHLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL  105 (330)
T ss_dssp             EETTEEECTTSCCCSCCCSC--CTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred             CCCeEEEecCCCccccCccC--CCCCeEEECCCCcCCEeC---hhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence            37999999999999998755  379999999999998863   33567899999999999999987 43 8889999999


Q ss_pred             EccCCCCcCccccccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcccc----ccccccCCCCCcEEECcCCCc
Q 020161          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRI  197 (330)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~----~~~~l~~~~~L~~L~l~~~~i  197 (330)
                      ++++|.+..++...  .++|+.|++++|.+...  ..+..+++|+.|++++|.+.    .+..+..+++|+.|++++|.+
T Consensus       106 ~Ls~n~l~~l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l  183 (330)
T 1xku_A          106 YLSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI  183 (330)
T ss_dssp             ECCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred             ECCCCcCCccChhh--cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence            99999998766533  37899999999998885  34889999999999999884    235678899999999999999


Q ss_pred             cccccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc-cccccCC
Q 020161          198 KVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLS  272 (330)
Q Consensus       198 ~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~~~~~~~  272 (330)
                      ...+....++|+.|++++|.+++.  ..+..+++|+.|++++|.+++++  .+..+++|++|++++|+++.+ ..+..++
T Consensus       184 ~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~  263 (330)
T 1xku_A          184 TTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK  263 (330)
T ss_dssp             CSCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred             ccCCccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCC
Confidence            887555558999999999999877  35788999999999999999864  578899999999999999988 5688899


Q ss_pred             CCCeEeCCCCCCCchHHHHHHHhc------cccccchhhccCCCcccc
Q 020161          273 RLEDLWLNDNQIESLESIVEAVAG------SRETLTTIYLENNPCKIF  314 (330)
Q Consensus       273 ~L~~L~l~~n~l~~~~~~~~~~~~------~~~~L~~l~l~~n~~~~~  314 (330)
                      +|++|++++|+++.++.   ..+.      ..+.++.+++++|++...
T Consensus       264 ~L~~L~l~~N~i~~~~~---~~f~~~~~~~~~~~l~~l~l~~N~~~~~  308 (330)
T 1xku_A          264 YIQVVYLHNNNISAIGS---NDFCPPGYNTKKASYSGVSLFSNPVQYW  308 (330)
T ss_dssp             SCCEEECCSSCCCCCCT---TSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             CcCEEECCCCcCCccCh---hhcCCcccccccccccceEeecCccccc
Confidence            99999999999998753   2222      247889999999997653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=5.3e-28  Score=232.79  Aligned_cols=286  Identities=25%  Similarity=0.257  Sum_probs=211.3

Q ss_pred             cccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCC-Chhhhhhc-CCCCCEEeCCCCcCCccccccchhhcccCCC
Q 020161           21 EIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT-SLDSRISH-LSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (330)
Q Consensus        21 ~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L   98 (330)
                      ...+++++|+++++.+.+..+...+++|++|++++|.+. .+|..+.. +++|++|++++|.+.+..+   ..+..+++|
T Consensus       244 ~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p---~~~~~l~~L  320 (768)
T 3rgz_A          244 STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP---PFFGSCSLL  320 (768)
T ss_dssp             TTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC---GGGGGCTTC
T ss_pred             hcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc---hHHhcCCCc
Confidence            334455555555555544332234566666666666666 55555544 4777777777777766533   345567788


Q ss_pred             cEEEccCCcCc-CCCC--CCCCCcccEEEccCCCCcC-ccccccccC-CCcEEEccCCCCCC--cccccC--CCCccEEE
Q 020161           99 EELILRDNKLM-KIPD--VSIFKKLSVFDVSFNEITS-SHGLSNVTD-TLKELYVSKNEVPK--MEEIEH--FHDLQILE  169 (330)
Q Consensus        99 ~~L~l~~~~l~-~~~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~-~L~~L~l~~~~~~~--~~~~~~--~~~L~~L~  169 (330)
                      ++|++++|.+. .+|.  +..+++|++|++++|.+.+ ++.....++ +|+.|++++|.+.+  +..+..  +++|++|+
T Consensus       321 ~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~  400 (768)
T 3rgz_A          321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELY  400 (768)
T ss_dssp             CEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEE
T ss_pred             cEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEE
Confidence            88888888776 4553  6677888888888887763 333333344 78888888887765  233333  67899999


Q ss_pred             cCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC
Q 020161          170 FGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK  242 (330)
Q Consensus       170 l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~  242 (330)
                      +++|.++  .+..+..+++|++|++++|.+.+.   .+..+++|+.|++++|.+++.  ..+..++.|+.|++++|.+++
T Consensus       401 L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~  480 (768)
T 3rgz_A          401 LQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG  480 (768)
T ss_dssp             CCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             CCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence            9999885  456788899999999999987754   677889999999999998865  357788999999999999986


Q ss_pred             C--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161          243 M--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK  312 (330)
Q Consensus       243 ~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~  312 (330)
                      .  ..+..+++|++|++++|++++.  .+++.+++|++|++++|+++.   .++..+..+++|+.|++++|++.
T Consensus       481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~---~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSG---NIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE---ECCGGGGGCTTCCEEECCSSEEE
T ss_pred             cCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccC---cCCHHHcCCCCCCEEECCCCccC
Confidence            4  4578899999999999999865  678899999999999999883   23455788999999999999976

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=4.6e-27  Score=216.94  Aligned_cols=171  Identities=24%  Similarity=0.306  Sum_probs=139.0

Q ss_pred             CCcEEEccCCCCCCcccccCCCCccEEEcCCccccc--cccccCCCCCcEEECcCCCcccc-----ccCCCCcccEEECC
Q 020161          142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV--MENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQ  214 (330)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l~~~~i~~~-----~~~~~~~L~~L~l~  214 (330)
                      +++.|++++|.+.....+..+++|++|++++|.++.  +..+..+++|++|++++|.+.+.     .+..+++|+.|+++
T Consensus       303 ~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls  382 (520)
T 2z7x_B          303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDIS  382 (520)
T ss_dssp             CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECC
T ss_pred             ceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECC
Confidence            466666666666554434788999999999999864  56788999999999999998863     37889999999999


Q ss_pred             CCcccc-cc--ccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHH
Q 020161          215 SNRLTS-MK--GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESI  290 (330)
Q Consensus       215 ~~~l~~-~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~  290 (330)
                      +|.+++ .+  .+..++.|+.|++++|.+++...-.-.++|+.|++++|+++.+ ..+..+++|++|++++|+++.++. 
T Consensus       383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~-  461 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPD-  461 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCT-
T ss_pred             CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCH-
Confidence            999987 54  4677899999999999987632111127999999999999988 456799999999999999998763 


Q ss_pred             HHHHhccccccchhhccCCCccccc
Q 020161          291 VEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       291 ~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                        ..+..+++|+.|++++|++.+..
T Consensus       462 --~~~~~l~~L~~L~l~~N~~~c~c  484 (520)
T 2z7x_B          462 --GIFDRLTSLQKIWLHTNPWDCSC  484 (520)
T ss_dssp             --TTTTTCTTCCEEECCSSCBCCCH
T ss_pred             --HHhccCCcccEEECcCCCCcccC
Confidence              35778999999999999987644

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=9.1e-27  Score=216.86  Aligned_cols=288  Identities=22%  Similarity=0.272  Sum_probs=208.3

Q ss_pred             ccccccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhccc
Q 020161           18 QAVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL   95 (330)
Q Consensus        18 ~~~~~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   95 (330)
                      ..+...+++++|+++++.+.++++  ...+++|++|++++|.++.+|..  .+++|++|++++|.+....  .+..+..+
T Consensus        70 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~--~p~~~~~l  145 (562)
T 3a79_B           70 PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLRHLDLSFNDFDVLP--VCKEFGNL  145 (562)
T ss_dssp             GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSC--CCTTCSEEECCSSCCSBCC--CCGGGGGC
T ss_pred             hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCcc--ccccCCEEECCCCCccccC--chHhhccc
Confidence            455667889999999999988754  34568899999999999988876  7899999999999887742  12356778


Q ss_pred             CCCcEEEccCCcCcCCCCCCCCCcc--cEEEccCCCC--cCcccccc---------------------------cc----
Q 020161           96 AGLEELILRDNKLMKIPDVSIFKKL--SVFDVSFNEI--TSSHGLSN---------------------------VT----  140 (330)
Q Consensus        96 ~~L~~L~l~~~~l~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~~---------------------------~~----  140 (330)
                      ++|++|++++|.+... .+..+++|  ++|++++|.+  .+..+...                           .+    
T Consensus       146 ~~L~~L~L~~n~l~~~-~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~  224 (562)
T 3a79_B          146 TKLTFLGLSAAKFRQL-DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQ  224 (562)
T ss_dssp             TTCCEEEEECSBCCTT-TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEE
T ss_pred             CcccEEecCCCccccC-chhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEE
Confidence            8899999988887752 24444555  7777777765  22110000                           00    


Q ss_pred             ---------------------------------------------------CCCcEEEccCCCCCC--------------
Q 020161          141 ---------------------------------------------------DTLKELYVSKNEVPK--------------  155 (330)
Q Consensus       141 ---------------------------------------------------~~L~~L~l~~~~~~~--------------  155 (330)
                                                                         .+|++|++++|.+.+              
T Consensus       225 ~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L  304 (562)
T 3a79_B          225 LSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETAL  304 (562)
T ss_dssp             EEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC
T ss_pred             EecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccc
Confidence                                                               144455555444331              


Q ss_pred             -----------------------------------------cccccCCCCccEEEcCCccccc--cccccCCCCCcEEEC
Q 020161          156 -----------------------------------------MEEIEHFHDLQILEFGSNRLRV--MENLQNLTNLQELWL  192 (330)
Q Consensus       156 -----------------------------------------~~~~~~~~~L~~L~l~~~~~~~--~~~l~~~~~L~~L~l  192 (330)
                                                               ......+++|++|++++|.++.  +..+..+++|++|++
T Consensus       305 ~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  384 (562)
T 3a79_B          305 KSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL  384 (562)
T ss_dssp             CEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC
T ss_pred             hheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEEC
Confidence                                                     1111566788888888888753  456778888888888


Q ss_pred             cCCCcccc-----ccCCCCcccEEECCCCcccc-cc--ccccccccceEEccCCCCCCCcCCCCC-CCCCEEEcCCCCCC
Q 020161          193 GRNRIKVV-----NLCGLKCIKKISLQSNRLTS-MK--GFEECIALEELYLSHNGISKMEGLSTL-VNLHVLDVSSNKLT  263 (330)
Q Consensus       193 ~~~~i~~~-----~~~~~~~L~~L~l~~~~l~~-~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~-~~L~~L~l~~n~~~  263 (330)
                      ++|.+...     .+..+++|+.|++++|.+++ .+  .+..++.|+.|++++|.+++.. ...+ ++|++|++++|+++
T Consensus       385 ~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~~L~~L~L~~N~l~  463 (562)
T 3a79_B          385 QRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV-FRCLPPKVKVLDLHNNRIM  463 (562)
T ss_dssp             CSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-GSSCCTTCSEEECCSSCCC
T ss_pred             CCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcch-hhhhcCcCCEEECCCCcCc
Confidence            88887754     36778888888888888876 43  3667788888888888886532 1222 68999999999999


Q ss_pred             Cc-cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161          264 LV-DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       264 ~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      .+ ..+..+++|++|++++|+++.++.   ..+..+++|+.|++++|++.+.
T Consensus       464 ~ip~~~~~l~~L~~L~L~~N~l~~l~~---~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          464 SIPKDVTHLQALQELNVASNQLKSVPD---GVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             CCCTTTTSSCCCSEEECCSSCCCCCCT---TSTTTCTTCCCEECCSCCBCCC
T ss_pred             ccChhhcCCCCCCEEECCCCCCCCCCH---HHHhcCCCCCEEEecCCCcCCC
Confidence            88 446688999999999999998763   3477889999999999997654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=3.5e-26  Score=217.69  Aligned_cols=291  Identities=26%  Similarity=0.274  Sum_probs=201.0

Q ss_pred             cccccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCC------Chhh----hhhcCCCCCEEeCCCCcCCcccc
Q 020161           19 AVEIDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT------SLDS----RISHLSNLKKLSLRQNLIDDAAI   86 (330)
Q Consensus        19 ~~~~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~------~l~~----~~~~l~~L~~L~l~~~~~~~~~~   86 (330)
                      .+...+++++|+++++.+.++++  ...+++|++|++++|...      .+|.    .+..+++|++|++++|.+.+..+
T Consensus       267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~  346 (680)
T 1ziw_A          267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS  346 (680)
T ss_dssp             TTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT
T ss_pred             cccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh
Confidence            34456778888888887766532  223445555555543222      1111    23444455555555444444321


Q ss_pred             ccchhhccc----------------------------CCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCc-c-
Q 020161           87 EPISRWDAL----------------------------AGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSS-H-  134 (330)
Q Consensus        87 ~~~~~~~~~----------------------------~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~-~-  134 (330)
                         ..|..+                            ++|+.|++++|.++.+++  +..+++|++|++++|.+.+. + 
T Consensus       347 ---~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  423 (680)
T 1ziw_A          347 ---NMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG  423 (680)
T ss_dssp             ---TTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCS
T ss_pred             ---hHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCc
Confidence               122233                            356666666666665432  56677777777777776542 2 


Q ss_pred             ccccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcccc----ccccccCCCCCcEEECcCCCcccc---ccCCC
Q 020161          135 GLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRIKVV---NLCGL  205 (330)
Q Consensus       135 ~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~  205 (330)
                      .....+++|+.|++++|.+...  ..+..+++|+.|++++|.+.    .+..+..+++|+.|++++|.+...   .+..+
T Consensus       424 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l  503 (680)
T 1ziw_A          424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGL  503 (680)
T ss_dssp             GGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             ccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccc
Confidence            1233367777888877776553  45667788888888887764    335577889999999999988776   47788


Q ss_pred             CcccEEECCCCcccccc----------ccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc--cccccC
Q 020161          206 KCIKKISLQSNRLTSMK----------GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNL  271 (330)
Q Consensus       206 ~~L~~L~l~~~~l~~~~----------~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~~~~~  271 (330)
                      ++|+.|++++|.++..+          .+..+++|+.|++++|.++.++  .+..+++|++|++++|+++.+  ..+..+
T Consensus       504 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l  583 (680)
T 1ziw_A          504 EKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQ  583 (680)
T ss_dssp             TTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred             cccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCC
Confidence            99999999999887652          2678899999999999999886  478999999999999999988  446789


Q ss_pred             CCCCeEeCCCCCCCchHHHHHHHhc-cccccchhhccCCCccccc
Q 020161          272 SRLEDLWLNDNQIESLESIVEAVAG-SRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       272 ~~L~~L~l~~n~l~~~~~~~~~~~~-~~~~L~~l~l~~n~~~~~~  315 (330)
                      ++|+.|++++|+++.++.   ..+. .+++|+.+++++|++.+..
T Consensus       584 ~~L~~L~L~~N~l~~~~~---~~~~~~~~~L~~l~l~~N~~~c~c  625 (680)
T 1ziw_A          584 VSLKSLNLQKNLITSVEK---KVFGPAFRNLTELDMRFNPFDCTC  625 (680)
T ss_dssp             TTCCEEECTTSCCCBCCH---HHHHHHHTTCSEEECTTCCCCBCC
T ss_pred             CCCCEEECCCCcCCccCh---hHhcccccccCEEEccCCCcccCC
Confidence            999999999999997753   3344 6789999999999976654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2.5e-26  Score=214.20  Aligned_cols=258  Identities=28%  Similarity=0.269  Sum_probs=171.0

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  104 (330)
                      ++++|+++++.+..+|. ..+++|++|++++|.++.+|.   .+++|++|++++|.++....       .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~~lp~-~l~~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~-------~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLTTLPD-CLPAHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV-------LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCSCCCS-CCCTTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC-------CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcCccCh-hhCCCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC-------CCCCCCEEECc
Confidence            46777887777777765 334778888888887777766   56778888888877765311       45777777777


Q ss_pred             CCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCC
Q 020161          105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL  184 (330)
Q Consensus       105 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~  184 (330)
                      +|.++.+|.  .+++|++|++++|.+..++..   +++|+.|++++|.+..++.  .+++|+.|++++|.++.++  ..+
T Consensus       110 ~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~--~~~~L~~L~L~~N~l~~l~--~~~  180 (622)
T 3g06_A          110 SNPLTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLP--MLP  180 (622)
T ss_dssp             SCCCCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCC--CCC
T ss_pred             CCcCCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC--ccCCCCEEECCCCCCCCCc--ccC
Confidence            777777765  556777777777777765542   3677777777777665432  3456777777777765444  345


Q ss_pred             CCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCC
Q 020161          185 TNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTL  264 (330)
Q Consensus       185 ~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~  264 (330)
                      ++|+.|++++|.+...+. ..++|+.|++++|.++..+.  .+++|+.|++++|.+++++  ..+++|+.|++++|+++.
T Consensus       181 ~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~--~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~  255 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPT-LPSELYKLWAYNNRLTSLPA--LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTS  255 (622)
T ss_dssp             TTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC
T ss_pred             CCCcEEECCCCCCCCCCC-ccchhhEEECcCCcccccCC--CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCc
Confidence            667777777777665421 23567777777776666543  2466777777777776665  445667777777777766


Q ss_pred             ccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161          265 VDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       265 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      ++.  .+++|+.|++++|+++.++    ..+.++++|+.|++++|++.+
T Consensus       256 lp~--~~~~L~~L~Ls~N~L~~lp----~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          256 LPM--LPSGLLSLSVYRNQLTRLP----ESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             CCC--CCTTCCEEECCSSCCCSCC----GGGGGSCTTCEEECCSCCCCH
T ss_pred             CCc--ccccCcEEeCCCCCCCcCC----HHHhhccccCEEEecCCCCCC
Confidence            644  5566777777777766554    224566777777777776544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=4e-27  Score=221.24  Aligned_cols=207  Identities=23%  Similarity=0.224  Sum_probs=162.5

Q ss_pred             CCCCCcccEEEccCCCCcCcc---ccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccccc---ccccCCCC
Q 020161          114 VSIFKKLSVFDVSFNEITSSH---GLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM---ENLQNLTN  186 (330)
Q Consensus       114 ~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~l~~~~~  186 (330)
                      +..+++|++|++++|.+....   .....+++|+.|++++|.+... ..+..+++|+.|++++|.+...   ..+..+++
T Consensus       346 ~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  425 (606)
T 3vq2_A          346 KVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK  425 (606)
T ss_dssp             CCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTT
T ss_pred             hccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhcccc
Confidence            345556666666666655442   2233367788888888876663 4577889999999999988533   46788999


Q ss_pred             CcEEECcCCCcccc---ccCCCCcccEEECCCCccccc---cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcC
Q 020161          187 LQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM---KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVS  258 (330)
Q Consensus       187 L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~---~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~  258 (330)
                      |++|++++|.+...   .+..+++|++|++++|.+++.   ..+..+++|+.|++++|.++++  ..+..+++|++|+++
T Consensus       426 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             CCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence            99999999998775   578889999999999998862   3578899999999999999886  358899999999999


Q ss_pred             CCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhcccc-ccchhhccCCCccccccccccccCC
Q 020161          259 SNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE-TLTTIYLENNPCKIFKLFCYPQTNF  324 (330)
Q Consensus       259 ~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~~~~~~~~~~  324 (330)
                      +|++++.  ..+..+++|+.|++++|+++.++..    +..++ +|+.+++++|++.+.....|-..|+
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~----~~~l~~~L~~l~l~~N~~~c~c~~~~~~~~l  570 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGI----LQHFPKSLAFFNLTNNSVACICEHQKFLQWV  570 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESC----GGGSCTTCCEEECCSCCCCCSSTTHHHHTTT
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCCcCcccCHh----HhhhcccCcEEEccCCCcccCCccHHHHHHH
Confidence            9999988  6788999999999999999987632    56666 5999999999987655444333333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=8.7e-27  Score=217.37  Aligned_cols=111  Identities=24%  Similarity=0.275  Sum_probs=74.4

Q ss_pred             cCCCCcccEEECCCCcccccc---ccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCC--c-cccccCCC
Q 020161          202 LCGLKCIKKISLQSNRLTSMK---GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTL--V-DDIQNLSR  273 (330)
Q Consensus       202 ~~~~~~L~~L~l~~~~l~~~~---~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~--~-~~~~~~~~  273 (330)
                      +..+++|+.|++++|.++..+   .+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++  . ..+..+++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~  471 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRN  471 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccC
Confidence            444555555555555554431   345566667777777666553  345667778888888887762  2 55677888


Q ss_pred             CCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          274 LEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       274 L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      |++|++++|+++++.   +..+..+++|+.|++++|.+.+..
T Consensus       472 L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~~~  510 (570)
T 2z63_A          472 LTFLDLSQCQLEQLS---PTAFNSLSSLQVLNMASNQLKSVP  510 (570)
T ss_dssp             CCEEECTTSCCCEEC---TTTTTTCTTCCEEECCSSCCSCCC
T ss_pred             CCEEECCCCccccCC---hhhhhcccCCCEEeCCCCcCCCCC
Confidence            888888888888552   345677888888888888877664

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=7e-27  Score=203.49  Aligned_cols=257  Identities=24%  Similarity=0.319  Sum_probs=217.1

Q ss_pred             CcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEE
Q 020161           47 NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD  124 (330)
Q Consensus        47 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~  124 (330)
                      +++.++++++.+..+|..+  .++|++|++++|.+....   ...+..+++|++|++++|.++.+++  +..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNNDISELR---KDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCccccCCCC--CCCCeEEECCCCcCCccC---HhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            6999999999999998765  479999999999998763   3356789999999999999997643  88899999999


Q ss_pred             ccCCCCcCccccccccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccccc----cccccCCCCCcEEECcCCCcc
Q 020161          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRV----MENLQNLTNLQELWLGRNRIK  198 (330)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~----~~~l~~~~~L~~L~l~~~~i~  198 (330)
                      +++|.+..++....  ++|++|++++|.+..+.  .+..+++|+.|++++|.++.    +..+..+ +|+.|++++|.+.
T Consensus       109 L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~  185 (332)
T 2ft3_A          109 ISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT  185 (332)
T ss_dssp             CCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred             CCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence            99999987765433  78999999999998853  48899999999999998852    3445555 8999999999998


Q ss_pred             ccccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc-cccccCCC
Q 020161          199 VVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLSR  273 (330)
Q Consensus       199 ~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~  273 (330)
                      ..+....++|+.|++++|.++..+  .+..+++|+.|++++|.+++++  .+..+++|++|++++|+++.+ ..+..+++
T Consensus       186 ~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~  265 (332)
T 2ft3_A          186 GIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKL  265 (332)
T ss_dssp             SCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTT
T ss_pred             ccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCcc
Confidence            885555689999999999998874  5788999999999999999874  478899999999999999988 55889999


Q ss_pred             CCeEeCCCCCCCchHHHHHHHhcc------ccccchhhccCCCcccc
Q 020161          274 LEDLWLNDNQIESLESIVEAVAGS------RETLTTIYLENNPCKIF  314 (330)
Q Consensus       274 L~~L~l~~n~l~~~~~~~~~~~~~------~~~L~~l~l~~n~~~~~  314 (330)
                      |++|++++|+++.++.   ..+..      .+.|+.+++++|++...
T Consensus       266 L~~L~l~~N~l~~~~~---~~~~~~~~~~~~~~l~~L~l~~N~~~~~  309 (332)
T 2ft3_A          266 LQVVYLHTNNITKVGV---NDFCPVGFGVKRAYYNGISLFNNPVPYW  309 (332)
T ss_dssp             CCEEECCSSCCCBCCT---TSSSCSSCCSSSCCBSEEECCSSSSCGG
T ss_pred             CCEEECCCCCCCccCh---hHccccccccccccccceEeecCccccc
Confidence            9999999999997752   22222      47799999999998643

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=5.7e-26  Score=205.47  Aligned_cols=270  Identities=20%  Similarity=0.258  Sum_probs=156.9

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      .++++|+++++.+.+++.  .+++|++|++++|.++++| .+.++++|++|++++|.+.+. +.      ..++|++|++
T Consensus       111 ~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l-p~------~~~~L~~L~L  180 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKL-PD------LPPSLEFIAA  180 (454)
T ss_dssp             TTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCC-CC------CCTTCCEEEC
T ss_pred             CCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCccc-CC------CcccccEEEC
Confidence            455555555555555442  2367777777777777776 477777888888888777653 11      1247778888


Q ss_pred             cCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccC
Q 020161          104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN  183 (330)
Q Consensus       104 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~  183 (330)
                      ++|.++.+|.+..+++|++|++++|.+.+++..   ..+|+.|++++|.+..+..+..+++|++|++++|.++.++.  .
T Consensus       181 ~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--~  255 (454)
T 1jl5_A          181 GNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD--L  255 (454)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--C
T ss_pred             cCCcCCcCccccCCCCCCEEECCCCcCCcCCCC---cCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--c
Confidence            887777777777778888888888877765442   35777888888877766567777788888888777754332  1


Q ss_pred             CCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccc-----------------c-ccccceEEccCCCCCCCcC
Q 020161          184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFE-----------------E-CIALEELYLSHNGISKMEG  245 (330)
Q Consensus       184 ~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~-----------------~-~~~L~~l~l~~~~~~~~~~  245 (330)
                      .++|+.|++++|.+.+.+. .+++|+.|++++|.+++.+.+.                 . +++|+.|++++|.+++++.
T Consensus       256 ~~~L~~L~l~~N~l~~l~~-~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~  334 (454)
T 1jl5_A          256 PPSLEALNVRDNYLTDLPE-LPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA  334 (454)
T ss_dssp             CTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC
T ss_pred             ccccCEEECCCCcccccCc-ccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCccccccc
Confidence            3566677776666655421 2345666666666555432111                 1 1355555565555555443


Q ss_pred             CCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccc-------------cccchhhccCCCcc
Q 020161          246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR-------------ETLTTIYLENNPCK  312 (330)
Q Consensus       246 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~-------------~~L~~l~l~~n~~~  312 (330)
                      .  +++|++|++++|+++.++.  .+++|+.|++++|+++.++.+ +..+..+             ++|+.|++++|++.
T Consensus       335 ~--~~~L~~L~L~~N~l~~lp~--~l~~L~~L~L~~N~l~~l~~i-p~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          335 L--PPRLERLIASFNHLAEVPE--LPQNLKQLHVEYNPLREFPDI-PESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             C--CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCC-CTTCCEEECCC-----------------------
T ss_pred             c--CCcCCEEECCCCccccccc--hhhhccEEECCCCCCCcCCCC-hHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence            2  4566677777766666544  456677777777776653221 1223333             66777777777765


Q ss_pred             cc
Q 020161          313 IF  314 (330)
Q Consensus       313 ~~  314 (330)
                      +.
T Consensus       410 ~~  411 (454)
T 1jl5_A          410 EF  411 (454)
T ss_dssp             --
T ss_pred             cc
Confidence            54

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=6.7e-27  Score=217.23  Aligned_cols=129  Identities=19%  Similarity=0.230  Sum_probs=92.3

Q ss_pred             CCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           24 LSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      .++++|+++++.+.++++  ...+++|++|++++|.+..+++ .|.++++|++|++++|.+.+..   ...+..+++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~  102 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS---SSWFGPLSSLKY  102 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC---HHHHTTCTTCCE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC---HHHhccCCCCcE
Confidence            678888888888877643  4456788888888888887664 5778888888888888887752   234667788888


Q ss_pred             EEccCCcCcCC--CC-CCCCCcccEEEccCCC-CcCccc-cccccCCCcEEEccCCCCCC
Q 020161          101 LILRDNKLMKI--PD-VSIFKKLSVFDVSFNE-ITSSHG-LSNVTDTLKELYVSKNEVPK  155 (330)
Q Consensus       101 L~l~~~~l~~~--~~-~~~~~~L~~L~l~~~~-~~~~~~-~~~~~~~L~~L~l~~~~~~~  155 (330)
                      |++++|.++.+  +. +..+++|++|++++|. +..++. ....+++|++|++++|.+.+
T Consensus       103 L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A          103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             EECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            88888887743  33 6777888888888887 444432 23336777777777776654

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=6.5e-26  Score=215.81  Aligned_cols=283  Identities=27%  Similarity=0.333  Sum_probs=206.6

Q ss_pred             cCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChh-hhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161           23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~   99 (330)
                      ..++++|+++++.+.+++.  ...+++|++|++++|.+..++ ..+.++++|++|++++|.+...   +...|..+++|+
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l---~~~~~~~l~~L~  100 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQL---SDKTFAFCTNLT  100 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCC---CTTTTTTCTTCS
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCcc---ChhhhccCCCCC
Confidence            4678888888888888765  344688888888888888664 4578888888888888888765   223466788888


Q ss_pred             EEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcc--c--ccCCCCccEEEcCC
Q 020161          100 ELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKME--E--IEHFHDLQILEFGS  172 (330)
Q Consensus       100 ~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~--~~~~~~L~~L~l~~  172 (330)
                      +|++++|.++.+++  +..+++|++|++++|.+....+. ...+++|+.|++++|.+.+..  .  ...+++|+.|++++
T Consensus       101 ~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~  180 (680)
T 1ziw_A          101 ELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS  180 (680)
T ss_dssp             EEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred             EEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence            88888888887763  77888888888888888766543 334788888888888877642  2  33567888888888


Q ss_pred             cccccc--ccccCC---------------------------CCCcEEECcCCCcccc---ccCCCC--cccEEECCCCcc
Q 020161          173 NRLRVM--ENLQNL---------------------------TNLQELWLGRNRIKVV---NLCGLK--CIKKISLQSNRL  218 (330)
Q Consensus       173 ~~~~~~--~~l~~~---------------------------~~L~~L~l~~~~i~~~---~~~~~~--~L~~L~l~~~~l  218 (330)
                      |.++..  ..+..+                           ++|+.|++++|.+.+.   .+..++  +|+.|++++|.+
T Consensus       181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l  260 (680)
T 1ziw_A          181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL  260 (680)
T ss_dssp             CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred             CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence            876422  222222                           4566777777766554   333333  388888888877


Q ss_pred             cccc--ccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCC------c-----cccccCCCCCeEeCCCCC
Q 020161          219 TSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTL------V-----DDIQNLSRLEDLWLNDNQ  283 (330)
Q Consensus       219 ~~~~--~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~------~-----~~~~~~~~L~~L~l~~n~  283 (330)
                      ++.+  .+..++.|+.|++++|.++++  ..+..+++|+.|++++|....      +     ..+..+++|++|++++|.
T Consensus       261 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~  340 (680)
T 1ziw_A          261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND  340 (680)
T ss_dssp             CEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC
T ss_pred             CccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc
Confidence            7662  467788888888888888765  357778888888888765432      1     146678899999999999


Q ss_pred             CCchHHHHHHHhccccccchhhccCCCc
Q 020161          284 IESLESIVEAVAGSRETLTTIYLENNPC  311 (330)
Q Consensus       284 l~~~~~~~~~~~~~~~~L~~l~l~~n~~  311 (330)
                      ++.++   +..+..+++|+.|++++|.+
T Consensus       341 l~~~~---~~~~~~l~~L~~L~Ls~n~~  365 (680)
T 1ziw_A          341 IPGIK---SNMFTGLINLKYLSLSNSFT  365 (680)
T ss_dssp             BCCCC---TTTTTTCTTCCEEECTTCBS
T ss_pred             cCCCC---hhHhccccCCcEEECCCCch
Confidence            88654   45578889999999999873

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.95  E-value=2.8e-25  Score=200.90  Aligned_cols=262  Identities=24%  Similarity=0.293  Sum_probs=134.6

Q ss_pred             CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (330)
Q Consensus        26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  105 (330)
                      +++|+++++.+.++|.  .+++|++|++++|.++++|..   +++|++|++++|.+.+..     .  ..++|++|++++
T Consensus        73 l~~L~l~~~~l~~lp~--~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~-----~--~~~~L~~L~L~~  140 (454)
T 1jl5_A           73 AHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS-----D--LPPLLEYLGVSN  140 (454)
T ss_dssp             CSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC-----S--CCTTCCEEECCS
T ss_pred             CCEEEecCCccccCCC--CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCccc-----C--CCCCCCEEECcC
Confidence            3555555555555543  245555555555555554431   244555555555444321     0  013455555555


Q ss_pred             CcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCcc-------------------
Q 020161          106 NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQ-------------------  166 (330)
Q Consensus       106 ~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~-------------------  166 (330)
                      |.++.+|.+..+++|++|++++|.+.+++..   ..+|+.|++++|.+.+++.+..+++|+                   
T Consensus       141 n~l~~lp~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L  217 (454)
T 1jl5_A          141 NQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL  217 (454)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             CCCCCCcccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcc
Confidence            5555544444455555555555544443321   234455555555444443444444444                   


Q ss_pred             -EEEcCCccccccccccCCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcC
Q 020161          167 -ILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG  245 (330)
Q Consensus       167 -~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~  245 (330)
                       +|++++|.++.++.+..+++|++|++++|.+...+ ...++|+.|++++|.+++.+..  +++|+.+++++|.+++++.
T Consensus       218 ~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~-~~~~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~l~~  294 (454)
T 1jl5_A          218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP-DLPPSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSGLSE  294 (454)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCC-SCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSEESC
T ss_pred             cEEECcCCcCCcccccCCCCCCCEEECCCCcCCccc-ccccccCEEECCCCcccccCcc--cCcCCEEECcCCccCcccC
Confidence             44444444443333444555555555555444432 1224555555555555544322  2455556666555555432


Q ss_pred             CCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161          246 LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL  316 (330)
Q Consensus       246 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  316 (330)
                      +.  ++|+.|++++|++++++.+  .++|++|++++|+++.++.       .+++|+.|++++|.+..++.
T Consensus       295 ~~--~~L~~L~l~~N~l~~i~~~--~~~L~~L~Ls~N~l~~lp~-------~~~~L~~L~L~~N~l~~lp~  354 (454)
T 1jl5_A          295 LP--PNLYYLNASSNEIRSLCDL--PPSLEELNVSNNKLIELPA-------LPPRLERLIASFNHLAEVPE  354 (454)
T ss_dssp             CC--TTCCEEECCSSCCSEECCC--CTTCCEEECCSSCCSCCCC-------CCTTCCEEECCSSCCSCCCC
T ss_pred             cC--CcCCEEECcCCcCCcccCC--cCcCCEEECCCCccccccc-------cCCcCCEEECCCCccccccc
Confidence            22  4566666666666554321  2478888888888876542       24778888888888776543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=2.8e-26  Score=222.94  Aligned_cols=287  Identities=24%  Similarity=0.251  Sum_probs=180.4

Q ss_pred             ccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCC-Ch-hhhhhcCCCCCEEeCCCCcCCccccccchhhcccCC
Q 020161           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLT-SL-DSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG   97 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~-~l-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   97 (330)
                      ..+++++|+++++.+.++.+  ...+++|++|++++|.+. .+ +..|.++++|++|++++|.+....   +..|..+++
T Consensus        22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~---p~~~~~l~~   98 (844)
T 3j0a_A           22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH---PDAFQGLFH   98 (844)
T ss_dssp             SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC---TTSSCSCSS
T ss_pred             CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC---HhHccCCcc
Confidence            56788999999998888643  455788999999998444 56 446888999999999998888763   345667888


Q ss_pred             CcEEEccCCcCcC-CC-C--CCCCCcccEEEccCCCCcCccc--cccccCCCcEEEccCCCCCCc--ccccCC--CCccE
Q 020161           98 LEELILRDNKLMK-IP-D--VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELYVSKNEVPKM--EEIEHF--HDLQI  167 (330)
Q Consensus        98 L~~L~l~~~~l~~-~~-~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~--~~~~~~--~~L~~  167 (330)
                      |++|++++|.+++ ++ .  +..+++|++|++++|.+.....  ....+++|+.|++++|.+...  ..+..+  ++|+.
T Consensus        99 L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~  178 (844)
T 3j0a_A           99 LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSF  178 (844)
T ss_dssp             CCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCC
T ss_pred             cCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccce
Confidence            9999999888875 33 2  7788889999999988877643  234478888888888877652  333333  45566


Q ss_pred             EEcCCccccc--cccccCCC------CCcEEECcCCCcccc---------------------------------------
Q 020161          168 LEFGSNRLRV--MENLQNLT------NLQELWLGRNRIKVV---------------------------------------  200 (330)
Q Consensus       168 L~l~~~~~~~--~~~l~~~~------~L~~L~l~~~~i~~~---------------------------------------  200 (330)
                      |+++.|.+..  +..+..++      .|+.|++++|.+...                                       
T Consensus       179 L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~  258 (844)
T 3j0a_A          179 FSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQN  258 (844)
T ss_dssp             CEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGT
T ss_pred             EECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChh
Confidence            6665555432  12222222      255555555532211                                       


Q ss_pred             ccCC--CCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCC
Q 020161          201 NLCG--LKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLS  272 (330)
Q Consensus       201 ~~~~--~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~  272 (330)
                      .+.+  .++++.|++++|.++..  ..+..+++|+.|++++|.++++  ..+..+++|++|++++|.++..  ..+..++
T Consensus       259 ~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  338 (844)
T 3j0a_A          259 TFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLP  338 (844)
T ss_dssp             TTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCT
T ss_pred             hhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCC
Confidence            0111  14566666666655544  2345566666666666666554  2355566666666666666554  3455566


Q ss_pred             CCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161          273 RLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       273 ~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      +|+.|++++|.++.++   +..+..+++|+.|++++|.+...
T Consensus       339 ~L~~L~L~~N~i~~~~---~~~~~~l~~L~~L~Ls~N~l~~i  377 (844)
T 3j0a_A          339 KVAYIDLQKNHIAIIQ---DQTFKFLEKLQTLDLRDNALTTI  377 (844)
T ss_dssp             TCCEEECCSCCCCCCC---SSCSCSCCCCCEEEEETCCSCCC
T ss_pred             CCCEEECCCCCCCccC---hhhhcCCCCCCEEECCCCCCCcc
Confidence            6666666666665443   23345556666666666665443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=7e-26  Score=213.68  Aligned_cols=130  Identities=25%  Similarity=0.335  Sum_probs=98.3

Q ss_pred             ccCCCcEEeccCcccccCCCC--CCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCC
Q 020161           22 IDLSNTVLDLTSFQLHDLDSV--EFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~~--~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L   98 (330)
                      ++.++++||+++|.++.+++.  ..+++|++|++++|.|+.+++ .|.++++|++|++++|.+...   +...|..+++|
T Consensus        50 lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l---~~~~f~~L~~L  126 (635)
T 4g8a_A           50 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL---ALGAFSGLSSL  126 (635)
T ss_dssp             SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE---CGGGGTTCTTC
T ss_pred             CCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCC---CHHHhcCCCCC
Confidence            356788999999888888753  446889999999998888866 488888999999999888775   33456778888


Q ss_pred             cEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcc--ccccccCCCcEEEccCCCCC
Q 020161           99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSH--GLSNVTDTLKELYVSKNEVP  154 (330)
Q Consensus        99 ~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~  154 (330)
                      ++|++++|.++.+++  ++.+++|++|++++|.+..+.  .....+++|+.|++++|.+.
T Consensus       127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~  186 (635)
T 4g8a_A          127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ  186 (635)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccc
Confidence            888888888887764  677888888888888776543  22333667777777766543

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=3.5e-26  Score=206.61  Aligned_cols=238  Identities=26%  Similarity=0.382  Sum_probs=158.9

Q ss_pred             cCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161           23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  101 (330)
                      ......+++++..+..+|. ..+++++.|++++|.+..++. .|.++++|++|++++|.+...   ....|..+++|++|
T Consensus        42 ~~~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i---~~~~~~~l~~L~~L  117 (440)
T 3zyj_A           42 SNQFSKVICVRKNLREVPD-GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTI---EIGAFNGLANLNTL  117 (440)
T ss_dssp             CTTSCEEECCSCCCSSCCS-CCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEE---CGGGGTTCSSCCEE
T ss_pred             CCCCCEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCcc---ChhhccCCccCCEE
Confidence            3345677888888888775 556788888888888887664 478888888888888887775   33456677888888


Q ss_pred             EccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc-ccccc
Q 020161          102 ILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN-RLRVM  178 (330)
Q Consensus       102 ~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~  178 (330)
                      ++++|.++.++.  +..+++|++|++++|.+..++.                     ..+..+++|++|+++++ .+..+
T Consensus       118 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~---------------------~~~~~l~~L~~L~l~~~~~l~~i  176 (440)
T 3zyj_A          118 ELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPS---------------------YAFNRIPSLRRLDLGELKRLSYI  176 (440)
T ss_dssp             ECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECT---------------------TTTTTCTTCCEEECCCCTTCCEE
T ss_pred             ECCCCcCCeeCHhHhhccccCceeeCCCCcccccCH---------------------HHhhhCcccCEeCCCCCCCccee
Confidence            888888887764  6667777777777776654433                     23445556666666653 23221


Q ss_pred             --ccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCC
Q 020161          179 --ENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVN  251 (330)
Q Consensus       179 --~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~  251 (330)
                        ..+..+++|++|++++|.+... .+..+++|+.|++++|.++..  ..+..+++|+.|++++|.++++  ..+..+++
T Consensus       177 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          177 SEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS  256 (440)
T ss_dssp             CTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred             CcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence              2356667777777777776655 455666677777777766655  2455666667777776666654  24556666


Q ss_pred             CCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCC
Q 020161          252 LHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       252 L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~  285 (330)
                      |+.|++++|+++.+  ..+..+++|+.|++++|++.
T Consensus       257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             CCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            66777766666655  33556666666666666655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=4.3e-26  Score=206.71  Aligned_cols=237  Identities=25%  Similarity=0.357  Sum_probs=163.2

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      ....+++++..+..+|. ..++++++|++++|.+..+++ .|.++++|++|++++|.+....   ...|..+++|++|++
T Consensus        55 ~~~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLSEVPQ-GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE---VGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcCccCC-CCCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC---hhhccCcccCCEEEC
Confidence            44667777777777764 556778888888887776643 4777788888888887777652   234566777777777


Q ss_pred             cCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc-ccccc--
Q 020161          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN-RLRVM--  178 (330)
Q Consensus       104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~--  178 (330)
                      ++|.++.++.  +..+++|++|++++|.+..++.                     ..+..+++|+.|+++++ .+..+  
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---------------------~~~~~l~~L~~L~l~~~~~l~~i~~  189 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPS---------------------YAFNRVPSLMRLDLGELKKLEYISE  189 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECT---------------------TTTTTCTTCCEEECCCCTTCCEECT
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCH---------------------hHHhcCCcccEEeCCCCCCccccCh
Confidence            7777776654  5566777777777776654432                     23455566666666653 33322  


Q ss_pred             ccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCC
Q 020161          179 ENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLH  253 (330)
Q Consensus       179 ~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~  253 (330)
                      ..+..+++|+.|++++|.+... .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.++++  ..+..+++|+
T Consensus       190 ~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  269 (452)
T 3zyi_A          190 GAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLV  269 (452)
T ss_dssp             TTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             hhccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCC
Confidence            2466777888888888877766 566777788888888877766  2466777788888888877765  3466777788


Q ss_pred             EEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCc
Q 020161          254 VLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       254 ~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      .|++++|+++.+  ..+..+++|+.|++++|++..
T Consensus       270 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          270 ELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             EEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             EEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            888888877766  345667778888888877663

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.94  E-value=1.1e-24  Score=203.14  Aligned_cols=237  Identities=26%  Similarity=0.308  Sum_probs=207.5

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      +++++|+++++.+..++.  .+++|++|++++|.++++|.   .+++|++|++++|.+.....       .+++|++|++
T Consensus        61 ~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~l~~-------~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTHLPA-------LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCCCCCCCC-------CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCcCCCCCC-------CCCCcCEEEC
Confidence            789999999999999887  67999999999999999987   78999999999999887421       4688999999


Q ss_pred             cCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccC
Q 020161          104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQN  183 (330)
Q Consensus       104 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~  183 (330)
                      ++|.++.+|.  .+++|++|++++|.+..++.   .+.+|+.|++++|.+..+.  ..+++|+.|++++|.++.++.  .
T Consensus       129 ~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~l~~--~  199 (622)
T 3g06_A          129 FGNQLTSLPV--LPPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLASLPT--L  199 (622)
T ss_dssp             CSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--C
T ss_pred             CCCCCCcCCC--CCCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCCCCC--c
Confidence            9999999886  35899999999999987764   3578999999999998865  567899999999999875543  2


Q ss_pred             CCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 020161          184 LTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT  263 (330)
Q Consensus       184 ~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~  263 (330)
                      .++|+.|++++|.+...+- .+++|+.|++++|.+++.+  ..+++|+.|++++|.++.++.  .+++|+.|++++|+++
T Consensus       200 ~~~L~~L~L~~N~l~~l~~-~~~~L~~L~Ls~N~L~~lp--~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~  274 (622)
T 3g06_A          200 PSELYKLWAYNNRLTSLPA-LPSGLKELIVSGNRLTSLP--VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT  274 (622)
T ss_dssp             CTTCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC
T ss_pred             cchhhEEECcCCcccccCC-CCCCCCEEEccCCccCcCC--CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC
Confidence            4789999999999887642 3578999999999999887  567899999999999999886  6789999999999999


Q ss_pred             Cc-cccccCCCCCeEeCCCCCCCc
Q 020161          264 LV-DDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       264 ~~-~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      .+ ..+..+++|+.|++++|+++.
T Consensus       275 ~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          275 RLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             SCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             cCCHHHhhccccCEEEecCCCCCC
Confidence            88 568899999999999999984

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=7.2e-26  Score=220.04  Aligned_cols=284  Identities=20%  Similarity=0.218  Sum_probs=229.6

Q ss_pred             CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChh-hhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (330)
Q Consensus        26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  104 (330)
                      -+..+++++.++.+|.  .++++++|++++|.++.++ ..|.++++|++|++++|......  ....|..+++|++|+++
T Consensus         6 ~~~~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i--~~~~f~~L~~L~~L~Ls   81 (844)
T 3j0a_A            6 GRIAFYRFCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTI--DKEAFRNLPNLRILDLG   81 (844)
T ss_dssp             TEEEEESCCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEE--CTTTTSSCTTCCEEECT
T ss_pred             ceEEEccCCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcccc--CHHHhcCCCCCCEEECC
Confidence            4678999999999997  8899999999999999774 46999999999999999654432  23467889999999999


Q ss_pred             CCcCcCC-CC-CCCCCcccEEEccCCCCcCc-ccc--ccccCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCcccc
Q 020161          105 DNKLMKI-PD-VSIFKKLSVFDVSFNEITSS-HGL--SNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLR  176 (330)
Q Consensus       105 ~~~l~~~-~~-~~~~~~L~~L~l~~~~~~~~-~~~--~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~  176 (330)
                      +|.+..+ |. +..+++|++|++++|.+.+. +..  ...+++|+.|++++|.+.+.   ..+..+++|++|++++|.++
T Consensus        82 ~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~  161 (844)
T 3j0a_A           82 SSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF  161 (844)
T ss_dssp             TCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred             CCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCC
Confidence            9999976 43 88999999999999999863 222  44589999999999998774   45899999999999999885


Q ss_pred             c--cccccCC--CCCcEEECcCCCcccc---ccCCCC------cccEEECCCCcccccc---------------------
Q 020161          177 V--MENLQNL--TNLQELWLGRNRIKVV---NLCGLK------CIKKISLQSNRLTSMK---------------------  222 (330)
Q Consensus       177 ~--~~~l~~~--~~L~~L~l~~~~i~~~---~~~~~~------~L~~L~l~~~~l~~~~---------------------  222 (330)
                      .  +..+..+  ++|+.|+++.|.+...   .+..++      +|+.|++++|.++...                     
T Consensus       162 ~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~  241 (844)
T 3j0a_A          162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH  241 (844)
T ss_dssp             CCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred             eeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence            3  2445544  7899999999987664   333333      3999999998654320                     


Q ss_pred             -----------------ccc--cccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeC
Q 020161          223 -----------------GFE--ECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWL  279 (330)
Q Consensus       223 -----------------~~~--~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l  279 (330)
                                       .+.  .+++|+.|++++|.+.++  ..+..+++|+.|++++|+++..  ..+..+++|++|++
T Consensus       242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred             cccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence                             011  136899999999998875  4578899999999999999877  56888999999999


Q ss_pred             CCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161          280 NDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL  316 (330)
Q Consensus       280 ~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  316 (330)
                      ++|.++.+.   +..+..+++|+.|++++|.+.....
T Consensus       322 s~N~l~~~~---~~~~~~l~~L~~L~L~~N~i~~~~~  355 (844)
T 3j0a_A          322 SYNLLGELY---SSNFYGLPKVAYIDLQKNHIAIIQD  355 (844)
T ss_dssp             ESCCCSCCC---SCSCSSCTTCCEEECCSCCCCCCCS
T ss_pred             CCCCCCccC---HHHhcCCCCCCEEECCCCCCCccCh
Confidence            999998653   3557889999999999999877653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=2.4e-26  Score=198.74  Aligned_cols=231  Identities=20%  Similarity=0.270  Sum_probs=154.2

Q ss_pred             CCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEE
Q 020161           45 PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVF  123 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L  123 (330)
                      +++|++|++++|.++.+++ .+..+++|++|++++|.+.+..     .+..+++|++|++++|.++.++.   .++|++|
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----~~~~l~~L~~L~Ls~n~l~~l~~---~~~L~~L  104 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-----DLESLSTLRTLDLNNNYVQELLV---GPSIETL  104 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-----EETTCTTCCEEECCSSEEEEEEE---CTTCCEE
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-----hhhhcCCCCEEECcCCccccccC---CCCcCEE
Confidence            3456666666666665443 4556666666666666555421     14445556666666555554431   2455555


Q ss_pred             EccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc-
Q 020161          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV-  200 (330)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~-  200 (330)
                      ++++|.+.....                        ..+++|++|++++|.++..  ..+..+++|++|++++|.+... 
T Consensus       105 ~l~~n~l~~~~~------------------------~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A          105 HAANNNISRVSC------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             ECCSSCCSEEEE------------------------CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             ECCCCccCCcCc------------------------cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            555554443322                        2245566666666665432  2355566777777777776655 


Q ss_pred             --cc-CCCCcccEEECCCCccccccccccccccceEEccCCCCCCC-cCCCCCCCCCEEEcCCCCCCCc-cccccCCCCC
Q 020161          201 --NL-CGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLE  275 (330)
Q Consensus       201 --~~-~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~  275 (330)
                        .+ ..+++|+.|++++|.++..+....+++|+.|++++|.++++ +.+..+++|++|++++|+++.+ ..+..+++|+
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L~  240 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE  240 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred             HHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCCC
Confidence              22 34677888888888888776666788899999999998886 4577788999999999999977 5577889999


Q ss_pred             eEeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161          276 DLWLNDNQIESLESIVEAVAGSRETLTTIYLENN  309 (330)
Q Consensus       276 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n  309 (330)
                      .|++++|++..  +.++..+..+++|+.++++++
T Consensus       241 ~L~l~~N~~~~--~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          241 HFDLRGNGFHC--GTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             EEECTTCCCBH--HHHHHHHHTCHHHHHHHHHHH
T ss_pred             EEEccCCCccC--cCHHHHHhccccceEEECCCc
Confidence            99999999984  345677788899999998844

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.9e-25  Score=196.07  Aligned_cols=259  Identities=21%  Similarity=0.278  Sum_probs=203.1

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      ...+.+++++.+..+|. ..+++|++|++++|.++.++. .+.++++|++|++++|.+.+..   ...+..+++|++|++
T Consensus        32 ~~~~c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L  107 (353)
T 2z80_A           32 RNGICKGSSGSLNSIPS-GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE---EDSFSSLGSLEHLDL  107 (353)
T ss_dssp             TTSEEECCSTTCSSCCT-TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC---TTTTTTCTTCCEEEC
T ss_pred             CCeEeeCCCCCcccccc-cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC---HhhcCCCCCCCEEEC
Confidence            34557888999999886 566899999999999998877 5899999999999999998763   335677899999999


Q ss_pred             cCCcCcCCCC--CCCCCcccEEEccCCCCcCccc--cccccCCCcEEEccCCC-CCCc--ccccCCCCccEEEcCCcccc
Q 020161          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG--LSNVTDTLKELYVSKNE-VPKM--EEIEHFHDLQILEFGSNRLR  176 (330)
Q Consensus       104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~-~~~~--~~~~~~~~L~~L~l~~~~~~  176 (330)
                      ++|.++.++.  +..+++|++|++++|.+..++.  ....+++|+.|++++|. +...  ..+..+++|++|++++|.++
T Consensus       108 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~  187 (353)
T 2z80_A          108 SYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQ  187 (353)
T ss_dssp             CSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCC
T ss_pred             CCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcC
Confidence            9999998875  7789999999999999988776  34458899999999984 5443  45788889999999988875


Q ss_pred             c--cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc-----ccccccccceEEccCCCCCCC---
Q 020161          177 V--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK-----GFEECIALEELYLSHNGISKM---  243 (330)
Q Consensus       177 ~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~~L~~l~l~~~~~~~~---  243 (330)
                      .  +..+..+++|++|++++|.+...   .+..+++|+.|++++|.+++.+     ....+..++.++++++.+++.   
T Consensus       188 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~  267 (353)
T 2z80_A          188 SYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF  267 (353)
T ss_dssp             EECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHH
T ss_pred             ccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchh
Confidence            3  45677888899999988887655   2445778888888888887652     223456677777777776652   


Q ss_pred             ---cCCCCCCCCCEEEcCCCCCCCcc--ccccCCCCCeEeCCCCCCCch
Q 020161          244 ---EGLSTLVNLHVLDVSSNKLTLVD--DIQNLSRLEDLWLNDNQIESL  287 (330)
Q Consensus       244 ---~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~L~~L~l~~n~l~~~  287 (330)
                         +.+..+++|++|++++|+++.++  .+..+++|++|++++|++...
T Consensus       268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~  316 (353)
T 2z80_A          268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  316 (353)
T ss_dssp             HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCc
Confidence               24567788888888888888773  257788888888888888753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=1.4e-24  Score=204.78  Aligned_cols=146  Identities=23%  Similarity=0.319  Sum_probs=125.8

Q ss_pred             CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (330)
Q Consensus        26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  104 (330)
                      .+..++++..++.+|. ..++++++|++++|.|+.+++ .|.++++|++|++++|.+...   +.++|..+++|++|+++
T Consensus        33 ~~~~~c~~~~l~~vP~-~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i---~~~~f~~L~~L~~L~Ls  108 (635)
T 4g8a_A           33 NITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI---EDGAYQSLSHLSTLILT  108 (635)
T ss_dssp             TTEEECTTSCCSSCCS-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEE---CTTTTTTCTTCCEEECT
T ss_pred             CCEEECCCCCcCccCC-CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCc---ChhHhcCCCCCCEEEcc
Confidence            4567889999999986 678899999999999999986 599999999999999999886   34467889999999999


Q ss_pred             CCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCccc
Q 020161          105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRL  175 (330)
Q Consensus       105 ~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~  175 (330)
                      +|.++.+|.  +..+++|++|++++|.+..+++. ...+++|+.|++++|.+...   ..+..+++|++|++++|.+
T Consensus       109 ~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  185 (635)
T 4g8a_A          109 GNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI  185 (635)
T ss_dssp             TCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC
T ss_pred             CCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccc
Confidence            999998875  78899999999999999988765 34589999999999988763   4567788899988887654

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1.1e-24  Score=187.54  Aligned_cols=263  Identities=21%  Similarity=0.253  Sum_probs=179.5

Q ss_pred             CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (330)
Q Consensus        26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  104 (330)
                      .+.++++++.+..+|. ..++++++|++++|.++.++.. |.++++|++|++++|.+...... ...+..+++|++|+++
T Consensus         9 ~~~l~c~~~~l~~ip~-~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~~~L~~L~Ls   86 (306)
T 2z66_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC-SQSDFGTTSLKYLDLS   86 (306)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEE-EHHHHSCSCCCEEECC
T ss_pred             CCEEEcCCCCcccCCC-CCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCc-ccccccccccCEEECC
Confidence            4578999999999886 6678999999999999998875 78999999999999988764211 2345568899999999


Q ss_pred             CCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc--ccccc
Q 020161          105 DNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENL  181 (330)
Q Consensus       105 ~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~l  181 (330)
                      +|.+..++. +..+++|++|++++|.+......                    ..+..+++|++|++++|.+.  .+..+
T Consensus        87 ~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~  146 (306)
T 2z66_A           87 FNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF--------------------SVFLSLRNLIYLDISHTHTRVAFNGIF  146 (306)
T ss_dssp             SCSEEEEEEEEETCTTCCEEECTTSEEESSTTT--------------------TTTTTCTTCCEEECTTSCCEECSTTTT
T ss_pred             CCccccChhhcCCCCCCCEEECCCCcccccccc--------------------hhhhhccCCCEEECCCCcCCccchhhc
Confidence            998887765 66778888888888877655431                    12333444444444444443  11234


Q ss_pred             cCCCCCcEEECcCCCccc--c--ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--CCCCCCCCC
Q 020161          182 QNLTNLQELWLGRNRIKV--V--NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLH  253 (330)
Q Consensus       182 ~~~~~L~~L~l~~~~i~~--~--~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~  253 (330)
                      ..+++|++|++++|.+.+  .  .+..+++|+.|++++|.+++.  ..+..+++|+.|++++|.+++++  .+..+++|+
T Consensus       147 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  226 (306)
T 2z66_A          147 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ  226 (306)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCC
T ss_pred             ccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCC
Confidence            455556666666655543  1  455566677777777766665  24566778888888888887764  467788899


Q ss_pred             EEEcCCCCCCCc--cccccC-CCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCc
Q 020161          254 VLDVSSNKLTLV--DDIQNL-SRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC  311 (330)
Q Consensus       254 ~L~l~~n~~~~~--~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~  311 (330)
                      .|++++|++++.  ..+..+ ++|++|++++|+++...+. ..+..-+...+.+.+..+..
T Consensus       227 ~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~-~~~~~~l~~~~~~~~~~~~~  286 (306)
T 2z66_A          227 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH-QSFLQWIKDQRQLLVEVERM  286 (306)
T ss_dssp             EEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGG-HHHHHHHHHTGGGBSCGGGC
T ss_pred             EeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccCh-HHHHHHHHhhhhhhcccccc
Confidence            999999988876  456666 4899999999998753221 22222234455555544443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=1.9e-25  Score=196.05  Aligned_cols=263  Identities=20%  Similarity=0.236  Sum_probs=217.7

Q ss_pred             CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccE
Q 020161           45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSV  122 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~  122 (330)
                      ++.....++++++++.+|..+.  ++|++|++++|.+....   ...+..+++|++|++++|.++.+++  +..+++|++
T Consensus        30 C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~---~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  104 (353)
T 2z80_A           30 CDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYIS---NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEH  104 (353)
T ss_dssp             ECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEEC---TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             CCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccC---HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCE
Confidence            4555668999999999998654  59999999999998763   3356789999999999999998753  888999999


Q ss_pred             EEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcc---cccCCCCccEEEcCCcc-ccc--cccccCCCCCcEEECcCC
Q 020161          123 FDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKME---EIEHFHDLQILEFGSNR-LRV--MENLQNLTNLQELWLGRN  195 (330)
Q Consensus       123 L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~---~~~~~~~L~~L~l~~~~-~~~--~~~l~~~~~L~~L~l~~~  195 (330)
                      |++++|.+..++.. ...+++|++|++++|.+..+.   .+..+++|++|++++|. ++.  ...+..+++|++|++++|
T Consensus       105 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n  184 (353)
T 2z80_A          105 LDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDAS  184 (353)
T ss_dssp             EECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET
T ss_pred             EECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCC
Confidence            99999999987765 345899999999999988853   47889999999999984 543  356788999999999999


Q ss_pred             Ccccc---ccCCCCcccEEECCCCccccccc--cccccccceEEccCCCCCCCc-----CCCCCCCCCEEEcCCCCCCCc
Q 020161          196 RIKVV---NLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHNGISKME-----GLSTLVNLHVLDVSSNKLTLV  265 (330)
Q Consensus       196 ~i~~~---~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~l~l~~~~~~~~~-----~~~~~~~L~~L~l~~n~~~~~  265 (330)
                      .+.+.   .+..+++|++|++++|.++..+.  +..+++|+.|++++|.+++.+     .......++.++++++.+++.
T Consensus       185 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~  264 (353)
T 2z80_A          185 DLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE  264 (353)
T ss_dssp             TCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHH
T ss_pred             CcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCc
Confidence            88776   67788999999999999877643  446899999999999998753     234567889999999998764


Q ss_pred             ------cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          266 ------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       266 ------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                            ..+..+++|++|++++|+++.++   ..++..+++|+.|++++|++.+..
T Consensus       265 ~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L~~L~L~~N~~~~~~  317 (353)
T 2z80_A          265 SLFQVMKLLNQISGLLELEFSRNQLKSVP---DGIFDRLTSLQKIWLHTNPWDCSC  317 (353)
T ss_dssp             HHHHHHHHHHTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             chhhhHHHHhcccCCCEEECCCCCCCccC---HHHHhcCCCCCEEEeeCCCccCcC
Confidence                  45788999999999999999776   345678999999999999977654

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=4.3e-25  Score=190.43  Aligned_cols=239  Identities=19%  Similarity=0.262  Sum_probs=165.9

Q ss_pred             CCcCEEecCCCCCCC---hhhhhhcCCCCCEEeCCC-CcCCccccccchhhcccCCCcEEEccCCcCc-CCCC-CCCCCc
Q 020161           46 TNLTELDLTANRLTS---LDSRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAGLEELILRDNKLM-KIPD-VSIFKK  119 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~---l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~-~~~~~~  119 (330)
                      .++++|++++|.+.+   +|..+.++++|++|++++ |.+.+..+   ..+..+++|++|++++|.++ .+|. +..+++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  126 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP---PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC---GGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCC---hhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence            578999999998884   777888999999999984 77776543   34667888999999988887 4554 777888


Q ss_pred             ccEEEccCCCCcCc-cccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCC-CCcEEECcCCCc
Q 020161          120 LSVFDVSFNEITSS-HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLT-NLQELWLGRNRI  197 (330)
Q Consensus       120 L~~L~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~-~L~~L~l~~~~i  197 (330)
                      |++|++++|.+.+. +.....+++|+.|++++|.+.+                    ..+..+..++ .|++|++++|.+
T Consensus       127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--------------------~~p~~l~~l~~~L~~L~L~~N~l  186 (313)
T 1ogq_A          127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG--------------------AIPDSYGSFSKLFTSMTISRNRL  186 (313)
T ss_dssp             CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEE--------------------ECCGGGGCCCTTCCEEECCSSEE
T ss_pred             CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccC--------------------cCCHHHhhhhhcCcEEECcCCee
Confidence            88888888877643 2223334555555555555442                    1223334443 455555555544


Q ss_pred             ccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC-CcCCCCCCCCCEEEcCCCCCCCc--cccc
Q 020161          198 KVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-MEGLSTLVNLHVLDVSSNKLTLV--DDIQ  269 (330)
Q Consensus       198 ~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~--~~~~  269 (330)
                      .+.   .+..+. |+.|++++|.+++.  ..+..+++|+.|++++|.+++ ++.+..+++|++|++++|++++.  ..+.
T Consensus       187 ~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  265 (313)
T 1ogq_A          187 TGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT  265 (313)
T ss_dssp             EEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGG
T ss_pred             eccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHh
Confidence            422   233333 66666666666544  345677788888888888775 35577788999999999999844  6688


Q ss_pred             cCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161          270 NLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK  312 (330)
Q Consensus       270 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~  312 (330)
                      .+++|++|++++|+++..   ++.. .++++|+.+++++|++.
T Consensus       266 ~l~~L~~L~Ls~N~l~~~---ip~~-~~l~~L~~l~l~~N~~l  304 (313)
T 1ogq_A          266 QLKFLHSLNVSFNNLCGE---IPQG-GNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             GCTTCCEEECCSSEEEEE---CCCS-TTGGGSCGGGTCSSSEE
T ss_pred             cCcCCCEEECcCCccccc---CCCC-ccccccChHHhcCCCCc
Confidence            899999999999998832   1222 67899999999999943

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=2.5e-24  Score=196.53  Aligned_cols=229  Identities=20%  Similarity=0.269  Sum_probs=154.8

Q ss_pred             CCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEE
Q 020161           45 PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVF  123 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L  123 (330)
                      +++|++|++++|.+..+++ .|..+++|++|++++|.+++..+     +..+++|++|++++|.++.++.   .++|++|
T Consensus        33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~l~~l~~---~~~L~~L  104 (487)
T 3oja_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-----LESLSTLRTLDLNNNYVQELLV---GPSIETL  104 (487)
T ss_dssp             GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-----CTTCTTCCEEECCSSEEEEEEE---CTTCCEE
T ss_pred             CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-----cccCCCCCEEEecCCcCCCCCC---CCCcCEE
Confidence            3456666666666665543 45666666666666666554321     4445566666666665554432   1455555


Q ss_pred             EccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc-
Q 020161          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV-  200 (330)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~-  200 (330)
                      ++++|.+...+.                        ..+++|+.|++++|.++..  ..+..+++|+.|++++|.+.+. 
T Consensus       105 ~L~~N~l~~~~~------------------------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (487)
T 3oja_A          105 HAANNNISRVSC------------------------SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (487)
T ss_dssp             ECCSSCCCCEEE------------------------CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred             ECcCCcCCCCCc------------------------cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence            555555444332                        2335566666666665422  3455667777777777776654 


Q ss_pred             --ccC-CCCcccEEECCCCccccccccccccccceEEccCCCCCCC-cCCCCCCCCCEEEcCCCCCCCc-cccccCCCCC
Q 020161          201 --NLC-GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM-EGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLE  275 (330)
Q Consensus       201 --~~~-~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~  275 (330)
                        .+. .+++|+.|++++|.+++.+....+++|+.|++++|.++++ +.+..+++|+.|++++|.++++ ..+..+++|+
T Consensus       161 ~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~  240 (487)
T 3oja_A          161 FAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLE  240 (487)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCC
T ss_pred             hHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCC
Confidence              232 5678888888888888777666788999999999998886 4577888999999999999987 5577889999


Q ss_pred             eEeCCCCCCCchHHHHHHHhccccccchhhcc
Q 020161          276 DLWLNDNQIESLESIVEAVAGSRETLTTIYLE  307 (330)
Q Consensus       276 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~  307 (330)
                      .|++++|++..  +.++..+..++.|+.+++.
T Consensus       241 ~L~l~~N~l~c--~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          241 HFDLRGNGFHC--GTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             EEECTTCCBCH--HHHHHHHTTCHHHHHHHHH
T ss_pred             EEEcCCCCCcC--cchHHHHHhCCCCcEEecc
Confidence            99999999884  4456777889999999886

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.92  E-value=1.7e-27  Score=216.58  Aligned_cols=298  Identities=25%  Similarity=0.294  Sum_probs=167.1

Q ss_pred             ccccccCCCcEEeccCcccccCC------CCCCC-CCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCcCCccc
Q 020161           18 QAVEIDLSNTVLDLTSFQLHDLD------SVEFP-TNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDDAA   85 (330)
Q Consensus        18 ~~~~~~~~l~~l~l~~~~l~~~~------~~~~~-~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~   85 (330)
                      +.+...+++++|+++++.+.+..      ..... ++|++|++++|.+..     ++..+..+++|++|++++|.+.+..
T Consensus        50 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~  129 (461)
T 1z7x_W           50 SALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAG  129 (461)
T ss_dssp             HHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHH
T ss_pred             HHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHH
Confidence            33444455666666665554421      01111 156666666666652     3444566666666666666655432


Q ss_pred             cccchh--hcccCCCcEEEccCCcCcCCC-----C-CCCCCcccEEEccCCCCcCccc--ccc----ccCCCcEEEccCC
Q 020161           86 IEPISR--WDALAGLEELILRDNKLMKIP-----D-VSIFKKLSVFDVSFNEITSSHG--LSN----VTDTLKELYVSKN  151 (330)
Q Consensus        86 ~~~~~~--~~~~~~L~~L~l~~~~l~~~~-----~-~~~~~~L~~L~l~~~~~~~~~~--~~~----~~~~L~~L~l~~~  151 (330)
                      +..+..  ....++|++|++++|.++...     . +..+++|++|++++|.+.....  +..    ..++|+.|++++|
T Consensus       130 ~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n  209 (461)
T 1z7x_W          130 LQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC  209 (461)
T ss_dssp             HHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS
T ss_pred             HHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC
Confidence            222211  112345666666666655321     1 3345666666666666543211  111    1336677777776


Q ss_pred             CCCCc------ccccCCCCccEEEcCCcccccc------cc-ccCCCCCcEEECcCCCcccc-------ccCCCCcccEE
Q 020161          152 EVPKM------EEIEHFHDLQILEFGSNRLRVM------EN-LQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKI  211 (330)
Q Consensus       152 ~~~~~------~~~~~~~~L~~L~l~~~~~~~~------~~-l~~~~~L~~L~l~~~~i~~~-------~~~~~~~L~~L  211 (330)
                      .+...      ..+..+++|++|++++|.++..      .. ...+++|++|++++|.+...       .+..+++|++|
T Consensus       210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L  289 (461)
T 1z7x_W          210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKEL  289 (461)
T ss_dssp             CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEE
T ss_pred             CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceE
Confidence            66551      2344566677777777665321      11 12456677777777766653       23345667777


Q ss_pred             ECCCCcccccc--cc-----ccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc--cccc-----cC
Q 020161          212 SLQSNRLTSMK--GF-----EECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV--DDIQ-----NL  271 (330)
Q Consensus       212 ~l~~~~l~~~~--~~-----~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~--~~~~-----~~  271 (330)
                      ++++|.++...  .+     ...+.|+.|++++|.+++.      ..+..+++|++|++++|++++.  ..+.     ..
T Consensus       290 ~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  369 (461)
T 1z7x_W          290 SLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG  369 (461)
T ss_dssp             ECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTT
T ss_pred             ECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCC
Confidence            77777665431  11     1235777777777776653      2344567888888888877654  2222     15


Q ss_pred             CCCCeEeCCCCCCCchH-HHHHHHhccccccchhhccCCCccccc
Q 020161          272 SRLEDLWLNDNQIESLE-SIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       272 ~~L~~L~l~~n~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      ++|++|++++|.+++.+ ..++..+..+++|+.|++++|++++..
T Consensus       370 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~  414 (461)
T 1z7x_W          370 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAG  414 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHH
T ss_pred             CceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHH
Confidence            68888888888877421 133455667888888888888876654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=3.3e-23  Score=176.33  Aligned_cols=214  Identities=23%  Similarity=0.317  Sum_probs=143.7

Q ss_pred             cEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161           27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (330)
Q Consensus        27 ~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  105 (330)
                      +++++++..+..+|. ..++++++|++++|.+..++. .+..+++|++|++++|.+.+..   ...+..+++|++|++++
T Consensus        14 ~~~~c~~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID---AAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcccCCc-CCCCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC---HhhcCCccCCCEEeCCC
Confidence            678888888888875 567889999999999887775 4788888999999888887753   23456678888888888


Q ss_pred             Cc-CcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc--cc
Q 020161          106 NK-LMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--EN  180 (330)
Q Consensus       106 ~~-l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~  180 (330)
                      |. +..+++  +..+++|++|++++|.+....+                     ..+..+++|++|++++|.++..  ..
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~~~~~~  148 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGP---------------------GLFRGLAALQYLYLQDNALQALPDDT  148 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCT---------------------TTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECH---------------------hHhhCCcCCCEEECCCCcccccCHhH
Confidence            86 666532  5666677777777666544322                     1234445555555555544322  11


Q ss_pred             ccCCCCCcEEECcCCCccccccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCC--cCCCCCCCCCEEE
Q 020161          181 LQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLD  256 (330)
Q Consensus       181 l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~  256 (330)
                      +..+++|+                     .|++++|.++..+  .+..+++|+.|++++|.++++  ..+..+++|+.|+
T Consensus       149 ~~~l~~L~---------------------~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  207 (285)
T 1ozn_A          149 FRDLGNLT---------------------HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY  207 (285)
T ss_dssp             TTTCTTCC---------------------EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred             hccCCCcc---------------------EEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEee
Confidence            33444444                     4444444444442  245566777777777776664  3566777888888


Q ss_pred             cCCCCCCCc--cccccCCCCCeEeCCCCCCCc
Q 020161          257 VSSNKLTLV--DDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       257 l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      +++|++++.  ..+..+++|++|++++|++..
T Consensus       208 l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c  239 (285)
T 1ozn_A          208 LFANNLSALPTEALAPLRALQYLRLNDNPWVC  239 (285)
T ss_dssp             CCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred             CCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence            888888777  347778888888888888774

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.5e-24  Score=187.04  Aligned_cols=217  Identities=19%  Similarity=0.211  Sum_probs=163.3

Q ss_pred             CCCCEEeCCCCcCCc--cccccchhhcccCCCcEEEccC-CcCcC-CCC-CCCCCcccEEEccCCCCcCccccccccCCC
Q 020161           69 SNLKKLSLRQNLIDD--AAIEPISRWDALAGLEELILRD-NKLMK-IPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTL  143 (330)
Q Consensus        69 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~~L~~L~l~~-~~l~~-~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L  143 (330)
                      .+++.|+++++.+.+  ..+   ..+..+++|++|++++ +.+.+ +|. +..+++|++|++++|.+.+..         
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~---~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~---------  117 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIP---SSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI---------  117 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECC---GGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC---------
T ss_pred             ceEEEEECCCCCccCCcccC---hhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcC---------
Confidence            467777777777765  332   3455677777777773 66553 443 556666666666666554221         


Q ss_pred             cEEEccCCCCCCcccccCCCCccEEEcCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCC-cccEEECCCCc
Q 020161          144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLK-CIKKISLQSNR  217 (330)
Q Consensus       144 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~-~L~~L~l~~~~  217 (330)
                                  +..+..+++|++|++++|.++  .+..+..+++|++|++++|.+.+.   .+..++ .|+.|++++|.
T Consensus       118 ------------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~  185 (313)
T 1ogq_A          118 ------------PDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             ------------CGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             ------------CHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCe
Confidence                        234566777788888888775  446688899999999999998744   566666 89999999999


Q ss_pred             cccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHH
Q 020161          218 LTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVE  292 (330)
Q Consensus       218 l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~  292 (330)
                      +++.  ..+..+. |+.|++++|.+++.  ..+..+++|+.|++++|++++. +.+..+++|++|++++|+++..   ++
T Consensus       186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~---~p  261 (313)
T 1ogq_A          186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT---LP  261 (313)
T ss_dssp             EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEEC---CC
T ss_pred             eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCc---CC
Confidence            8854  3455555 99999999999864  4578899999999999999866 6678889999999999999832   24


Q ss_pred             HHhccccccchhhccCCCccc
Q 020161          293 AVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       293 ~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      ..+..+++|+.|++++|++.+
T Consensus       262 ~~l~~l~~L~~L~Ls~N~l~~  282 (313)
T 1ogq_A          262 QGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             GGGGGCTTCCEEECCSSEEEE
T ss_pred             hHHhcCcCCCEEECcCCcccc
Confidence            557889999999999999874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.91  E-value=1.1e-23  Score=181.21  Aligned_cols=236  Identities=25%  Similarity=0.266  Sum_probs=170.2

Q ss_pred             CEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCC---C-CCCCCCcccEEE
Q 020161           49 TELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI---P-DVSIFKKLSVFD  124 (330)
Q Consensus        49 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~-~~~~~~~L~~L~  124 (330)
                      +.+++++++++.+|..+  .++|++|++++|.+...   +...|..+++|++|++++|.++.+   + .+..+++     
T Consensus        10 ~~l~c~~~~l~~ip~~~--~~~l~~L~L~~n~l~~i---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~-----   79 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSL---PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTS-----   79 (306)
T ss_dssp             TEEECCSSCCSSCCSCC--CTTCCEEECCSSCCCCC---CTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSC-----
T ss_pred             CEEEcCCCCcccCCCCC--CCCCCEEECCCCccCcc---CHhHhhccccCCEEECCCCccCcccCcccccccccc-----
Confidence            45666666666666533  24666666666665543   112234555666666665555432   1 1223444     


Q ss_pred             ccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccccc---ccccCCCCCcEEECcCCCcccc
Q 020161          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV  200 (330)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~  200 (330)
                                        |+.|++++|.+..+ ..+..+++|++|++++|.++..   ..+..+++|++|++++|.+...
T Consensus        80 ------------------L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~  141 (306)
T 2z66_A           80 ------------------LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA  141 (306)
T ss_dssp             ------------------CCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEEC
T ss_pred             ------------------cCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCcc
Confidence                              45555555544442 3366778888888888877543   3578889999999999988765


Q ss_pred             ---ccCCCCcccEEECCCCcccc--c-cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--ccccc
Q 020161          201 ---NLCGLKCIKKISLQSNRLTS--M-KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQN  270 (330)
Q Consensus       201 ---~~~~~~~L~~L~l~~~~l~~--~-~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~  270 (330)
                         .+..+++|++|++++|.+++  . ..+..+++|+.|++++|.++++  ..+..+++|++|++++|++++.  ..+..
T Consensus       142 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  221 (306)
T 2z66_A          142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC  221 (306)
T ss_dssp             STTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred             chhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence               47788999999999999886  2 4578899999999999999986  4578899999999999999987  35788


Q ss_pred             CCCCCeEeCCCCCCCchHHHHHHHhcccc-ccchhhccCCCccccc
Q 020161          271 LSRLEDLWLNDNQIESLESIVEAVAGSRE-TLTTIYLENNPCKIFK  315 (330)
Q Consensus       271 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-~L~~l~l~~n~~~~~~  315 (330)
                      +++|++|++++|+++...   +..+..++ +|+.|++++|++.+..
T Consensus       222 l~~L~~L~L~~N~l~~~~---~~~~~~~~~~L~~L~L~~N~~~~~c  264 (306)
T 2z66_A          222 LNSLQVLDYSLNHIMTSK---KQELQHFPSSLAFLNLTQNDFACTC  264 (306)
T ss_dssp             CTTCCEEECTTSCCCBCS---SSSCCCCCTTCCEEECTTCCEECSG
T ss_pred             cccCCEeECCCCCCcccC---HHHHHhhhccCCEEEccCCCeeccc
Confidence            999999999999998643   34466664 9999999999987654

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=4.2e-23  Score=177.55  Aligned_cols=193  Identities=23%  Similarity=0.335  Sum_probs=98.5

Q ss_pred             hcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcE
Q 020161           66 SHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKE  145 (330)
Q Consensus        66 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  145 (330)
                      ..+++|++|+++++.+...     ..+..+++|++|++++|.+..++.+..+++|++|++++|.+..+            
T Consensus        38 ~~l~~L~~L~l~~~~i~~l-----~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~------------  100 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTI-----EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV------------  100 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC------------
T ss_pred             HHcCCcCEEEeeCCCccCc-----hhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc------------
Confidence            3455566666666555442     12444556666666666555555455555555555555555444            


Q ss_pred             EEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCcccccccc
Q 020161          146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGF  224 (330)
Q Consensus       146 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~  224 (330)
                                 ..+..+++|++|++++|.++....+..+++|++|++++|.+.+. .+..+++|+.|++++|.++..+.+
T Consensus       101 -----------~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l  169 (308)
T 1h6u_A          101 -----------SAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPL  169 (308)
T ss_dssp             -----------GGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGG
T ss_pred             -----------hhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhh
Confidence                       33444444444444444444333344444444444444444433 244444455555555554444444


Q ss_pred             ccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCc
Q 020161          225 EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       225 ~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      ..+++|+.|++++|.+++++.+..+++|++|++++|++++.+.+..+++|+.|++++|+++.
T Consensus       170 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          170 ANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred             cCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence            45555555555555555554455555555555555555555445555555555555555543

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=2.7e-24  Score=185.46  Aligned_cols=241  Identities=18%  Similarity=0.197  Sum_probs=138.9

Q ss_pred             CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccc-cccch----hhcccCCCcEEEccCCcCcC-CCC-C--C
Q 020161           45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAA-IEPIS----RWDALAGLEELILRDNKLMK-IPD-V--S  115 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~----~~~~~~~L~~L~l~~~~l~~-~~~-~--~  115 (330)
                      .++|+++++++|.+ .+|..+...  |+.|++++|.+.... +....    .+..+++|++|++++|.+++ +|. +  .
T Consensus        42 ~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            35688888888888 777765544  888888888775431 11110    11257888899998888874 554 3  6


Q ss_pred             CCCcccEEEccCCCCcCcccccccc-----CCCcEEEccCCCCCCc--ccccCCCCccEEEcCCccccc----cccccCC
Q 020161          116 IFKKLSVFDVSFNEITSSHGLSNVT-----DTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRV----MENLQNL  184 (330)
Q Consensus       116 ~~~~L~~L~l~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~----~~~l~~~  184 (330)
                      .+++|++|++++|.+.+.+.....+     ++|++|++++|.+...  ..+..+++|++|++++|.+..    +..+   
T Consensus       119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---  195 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL---  195 (312)
T ss_dssp             CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS---
T ss_pred             cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH---
Confidence            7888888888888887764332223     6677777777766653  345566666666666665321    1122   


Q ss_pred             CCCcEEECcCCCccccccCCCCcccEEECCCCcccccc-----ccccccccceEEccCCCCCCC---cCCCCCCCCCEEE
Q 020161          185 TNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMK-----GFEECIALEELYLSHNGISKM---EGLSTLVNLHVLD  256 (330)
Q Consensus       185 ~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~-----~~~~~~~L~~l~l~~~~~~~~---~~~~~~~~L~~L~  256 (330)
                                      .+..+++|++|++++|.++..+     .+..+++|+.|++++|.+++.   +.+..+++|++|+
T Consensus       196 ----------------~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~  259 (312)
T 1wwl_A          196 ----------------CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLN  259 (312)
T ss_dssp             ----------------CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEE
T ss_pred             ----------------HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEE
Confidence                            1133444444444444444321     112345555555555555542   2334455666666


Q ss_pred             cCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161          257 VSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       257 l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      +++|+++.++.... ++|++|++++|++++++    . +..+++|+.|++++|++++
T Consensus       260 Ls~N~l~~ip~~~~-~~L~~L~Ls~N~l~~~p----~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          260 LSFTGLKQVPKGLP-AKLSVLDLSYNRLDRNP----S-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CTTSCCSSCCSSCC-SEEEEEECCSSCCCSCC----C-TTTSCEEEEEECTTCTTTC
T ss_pred             CCCCccChhhhhcc-CCceEEECCCCCCCCCh----h-HhhCCCCCEEeccCCCCCC
Confidence            66666665422111 56666666666666542    1 4555666666666666544

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.90  E-value=5.7e-23  Score=176.71  Aligned_cols=195  Identities=22%  Similarity=0.337  Sum_probs=163.8

Q ss_pred             cccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCC
Q 020161           93 DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS  172 (330)
Q Consensus        93 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  172 (330)
                      ..+++|++|+++++.+..++.+..+++|++|++++|.+.                       .+..+..+++|++|++++
T Consensus        38 ~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~-----------------------~~~~~~~l~~L~~L~L~~   94 (308)
T 1h6u_A           38 ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQIT-----------------------DLAPLKNLTKITELELSG   94 (308)
T ss_dssp             HHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCC-----------------------CCGGGTTCCSCCEEECCS
T ss_pred             HHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCC-----------------------CChhHccCCCCCEEEccC
Confidence            345667777777766666655555556666665555543                       333366778888999999


Q ss_pred             ccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCC
Q 020161          173 NRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVN  251 (330)
Q Consensus       173 ~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~  251 (330)
                      |.++.++.+..+++|++|++++|.+.+. .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+++++.+..+++
T Consensus        95 n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~  174 (308)
T 1h6u_A           95 NPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSK  174 (308)
T ss_dssp             CCCSCCGGGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTT
T ss_pred             CcCCCchhhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChhhcCCCC
Confidence            8888777889999999999999998887 688899999999999999999888899999999999999999888999999


Q ss_pred             CCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccc
Q 020161          252 LHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       252 L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~  315 (330)
                      |+.|++++|++++++.+..+++|++|++++|++++++.     +..+++|+.|++++|++...+
T Consensus       175 L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~-----l~~l~~L~~L~l~~N~i~~~~  233 (308)
T 1h6u_A          175 LTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLTNQTITNQP  233 (308)
T ss_dssp             CCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEEEEEEEECCC
T ss_pred             CCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc-----ccCCCCCCEEEccCCeeecCC
Confidence            99999999999999778999999999999999998752     688999999999999987754

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.90  E-value=9.5e-24  Score=182.42  Aligned_cols=233  Identities=20%  Similarity=0.240  Sum_probs=182.3

Q ss_pred             CcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEc
Q 020161           47 NLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDV  125 (330)
Q Consensus        47 ~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l  125 (330)
                      .++..+++.+.+...+.. +..+++|++|++++|.+...   ....+..+++|++|++++|.+++++++..+++|++|++
T Consensus        11 ~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQI---SAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCC---CHHHHTTCTTCCEEECTTSCCEEEEEETTCTTCCEEEC
T ss_pred             ceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcC---CHHHhhCCCcCCEEECCCCcCCcchhhhhcCCCCEEEC
Confidence            345556666666654443 55677899999999888875   33456678888888888888876655677777777777


Q ss_pred             cCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---cc
Q 020161          126 SFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NL  202 (330)
Q Consensus       126 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~  202 (330)
                      ++|.+..++                          ..++|++|++++|.++... ...+++|++|++++|.+...   .+
T Consensus        88 s~n~l~~l~--------------------------~~~~L~~L~l~~n~l~~~~-~~~~~~L~~L~l~~N~l~~~~~~~~  140 (317)
T 3o53_A           88 NNNYVQELL--------------------------VGPSIETLHAANNNISRVS-CSRGQGKKNIYLANNKITMLRDLDE  140 (317)
T ss_dssp             CSSEEEEEE--------------------------ECTTCCEEECCSSCCSEEE-ECCCSSCEEEECCSSCCCSGGGBCT
T ss_pred             cCCcccccc--------------------------CCCCcCEEECCCCccCCcC-ccccCCCCEEECCCCCCCCccchhh
Confidence            777655433                          1256677777777665332 23467899999999998876   56


Q ss_pred             CCCCcccEEECCCCcccccc--cc-ccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEe
Q 020161          203 CGLKCIKKISLQSNRLTSMK--GF-EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLW  278 (330)
Q Consensus       203 ~~~~~L~~L~l~~~~l~~~~--~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~  278 (330)
                      ..+++|+.|++++|.++..+  .+ ..++.|+.|++++|.+++++....+++|++|++++|+++++ +.+..+++|++|+
T Consensus       141 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~  220 (317)
T 3o53_A          141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWIS  220 (317)
T ss_dssp             GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEE
T ss_pred             hccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccccccCCEEECCCCcCCcchhhhcccCcccEEE
Confidence            77899999999999998763  23 46799999999999999998888899999999999999988 5688899999999


Q ss_pred             CCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161          279 LNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       279 l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      +++|+++.++.    .+..+++|+.|++++|++.+
T Consensus       221 L~~N~l~~l~~----~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          221 LRNNKLVLIEK----ALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             CTTSCCCEECT----TCCCCTTCCEEECTTCCCBH
T ss_pred             CcCCcccchhh----HhhcCCCCCEEEccCCCccC
Confidence            99999997753    36788999999999999873

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=2.5e-25  Score=202.25  Aligned_cols=300  Identities=21%  Similarity=0.246  Sum_probs=215.1

Q ss_pred             CcccccccCCCcEEeccCcccccC-----C-CCCCCCCcCEEecCCCCCCChh-hh-hhcCC----CCCEEeCCCCcCCc
Q 020161           16 PDQAVEIDLSNTVLDLTSFQLHDL-----D-SVEFPTNLTELDLTANRLTSLD-SR-ISHLS----NLKKLSLRQNLIDD   83 (330)
Q Consensus        16 ~~~~~~~~~~l~~l~l~~~~l~~~-----~-~~~~~~~L~~L~l~~~~i~~l~-~~-~~~l~----~L~~L~l~~~~~~~   83 (330)
                      +...+...+++++|+++++.+...     + .+..+++|++|++++|.+.... .. ...++    +|++|++++|.+..
T Consensus        20 ~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~   99 (461)
T 1z7x_W           20 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   99 (461)
T ss_dssp             HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             HHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCH
Confidence            455566778899999998887742     2 2334688999999999887432 22 33455    69999999998876


Q ss_pred             ccccc-chhhcccCCCcEEEccCCcCcCC--C---C--CCCCCcccEEEccCCCCcCcc-----ccccccCCCcEEEccC
Q 020161           84 AAIEP-ISRWDALAGLEELILRDNKLMKI--P---D--VSIFKKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSK  150 (330)
Q Consensus        84 ~~~~~-~~~~~~~~~L~~L~l~~~~l~~~--~---~--~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~  150 (330)
                      ..... ...+..+++|++|++++|.++..  .   .  ....++|++|++++|.+....     .....+++|+.|++++
T Consensus       100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~  179 (461)
T 1z7x_W          100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN  179 (461)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcC
Confidence            43212 23467788999999999887631  1   1  233567999999999877532     2223368899999999


Q ss_pred             CCCCCc--ccc-----cCCCCccEEEcCCccccc------cccccCCCCCcEEECcCCCccccc--------cCCCCccc
Q 020161          151 NEVPKM--EEI-----EHFHDLQILEFGSNRLRV------MENLQNLTNLQELWLGRNRIKVVN--------LCGLKCIK  209 (330)
Q Consensus       151 ~~~~~~--~~~-----~~~~~L~~L~l~~~~~~~------~~~l~~~~~L~~L~l~~~~i~~~~--------~~~~~~L~  209 (330)
                      |.+.+.  ..+     ...++|++|++++|.++.      +..+..+++|++|++++|.+.+.+        +..+++|+
T Consensus       180 n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~  259 (461)
T 1z7x_W          180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR  259 (461)
T ss_dssp             SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             CCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCce
Confidence            987652  222     135689999999998864      345667889999999999877641        23578999


Q ss_pred             EEECCCCccccc------cccccccccceEEccCCCCCCC------cCC-CCCCCCCEEEcCCCCCCCc------ccccc
Q 020161          210 KISLQSNRLTSM------KGFEECIALEELYLSHNGISKM------EGL-STLVNLHVLDVSSNKLTLV------DDIQN  270 (330)
Q Consensus       210 ~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~-~~~~~L~~L~l~~n~~~~~------~~~~~  270 (330)
                      +|++++|.++..      ..+..+++|+.|++++|.+++.      ..+ ...++|++|++++|.+++.      ..+..
T Consensus       260 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~  339 (461)
T 1z7x_W          260 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ  339 (461)
T ss_dssp             EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             EEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh
Confidence            999999988874      2355689999999999988653      112 2346999999999999865      34667


Q ss_pred             CCCCCeEeCCCCCCCchH-HHHHHHhc-cccccchhhccCCCccccc
Q 020161          271 LSRLEDLWLNDNQIESLE-SIVEAVAG-SRETLTTIYLENNPCKIFK  315 (330)
Q Consensus       271 ~~~L~~L~l~~n~l~~~~-~~~~~~~~-~~~~L~~l~l~~n~~~~~~  315 (330)
                      +++|++|++++|.+++.+ ..+...+. .+++|+.|++++|.+++..
T Consensus       340 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~  386 (461)
T 1z7x_W          340 NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  386 (461)
T ss_dssp             CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence            899999999999988642 12222233 2679999999999987643

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=1.7e-22  Score=172.00  Aligned_cols=197  Identities=23%  Similarity=0.347  Sum_probs=144.0

Q ss_pred             CCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc
Q 020161           96 AGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN  173 (330)
Q Consensus        96 ~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  173 (330)
                      ++|++|+++++.++.++.  +..+++|++|++++|.+..+.+                     ..+..+++|++|++++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~---------------------~~~~~l~~L~~L~l~~n   90 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDA---------------------AAFTGLALLEQLDLSDN   90 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECT---------------------TTTTTCTTCCEEECCSC
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCH---------------------hhcCCccCCCEEeCCCC
Confidence            455555555555554432  4445555555555554443321                     24555666666676666


Q ss_pred             c-ccc--cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc-
Q 020161          174 R-LRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME-  244 (330)
Q Consensus       174 ~-~~~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~-  244 (330)
                      . ++.  +..+..+++|++|++++|.+...   .+..+++|++|++++|.++..+  .+..+++|+.|++++|.+++++ 
T Consensus        91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  170 (285)
T 1ozn_A           91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE  170 (285)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECT
T ss_pred             CCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCH
Confidence            5 442  24466677777778777776655   3667788888888888888774  3778999999999999999875 


Q ss_pred             -CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccc
Q 020161          245 -GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKL  316 (330)
Q Consensus       245 -~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~  316 (330)
                       .+..+++|++|++++|.+++.  ..+..+++|+.|++++|.++.++   +..+..+++|+.|++++|++.+...
T Consensus       171 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALP---TEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCC---HHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             HHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCC---HHHcccCcccCEEeccCCCccCCCC
Confidence             488899999999999999977  66888999999999999999765   4567889999999999999765443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=5e-24  Score=183.74  Aligned_cols=240  Identities=18%  Similarity=0.117  Sum_probs=160.0

Q ss_pred             ccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCC--Chhhhhh-------cCCCCCEEeCCCCcCCccccccch
Q 020161           20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLT--SLDSRIS-------HLSNLKKLSLRQNLIDDAAIEPIS   90 (330)
Q Consensus        20 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~--~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~~   90 (330)
                      +....++++++++++.+ .+|. ..+..+++|++++|.+.  .++..+.       ++++|++|++++|.+.+..+..+.
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~-~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~  116 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLG-QFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL  116 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCH-HHHHHHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred             EccCCCceeEeeccccc-ccHH-HHHHHHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence            34456788888888888 5553 34455999999999986  3555444       799999999999999876544321


Q ss_pred             hhcccCCCcEEEccCCcCcCCCC-CCCC-----CcccEEEccCCCCcCccc-cccccCCCcEEEccCCCCCCc----ccc
Q 020161           91 RWDALAGLEELILRDNKLMKIPD-VSIF-----KKLSVFDVSFNEITSSHG-LSNVTDTLKELYVSKNEVPKM----EEI  159 (330)
Q Consensus        91 ~~~~~~~L~~L~l~~~~l~~~~~-~~~~-----~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~----~~~  159 (330)
                       +..+++|++|++++|.++++|. +..+     ++|++|++++|.+..+++ ....+++|+.|++++|.+.+.    ..+
T Consensus       117 -~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  195 (312)
T 1wwl_A          117 -EATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL  195 (312)
T ss_dssp             -SCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred             -HhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence             2678999999999999998765 4444     899999999999998874 345589999999999986552    233


Q ss_pred             --cCCCCccEEEcCCcccccccc-----ccCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCcccccccccccc
Q 020161          160 --EHFHDLQILEFGSNRLRVMEN-----LQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMKGFEECI  228 (330)
Q Consensus       160 --~~~~~L~~L~l~~~~~~~~~~-----l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~~~~~~~~~~  228 (330)
                        ..+++|++|++++|.++....     +..+++|++|++++|.+.+.    .+..+++|+.|++++|.++..+.... +
T Consensus       196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~-~  274 (312)
T 1wwl_A          196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP-A  274 (312)
T ss_dssp             CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC-S
T ss_pred             HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc-C
Confidence              788899999999988863321     24556777777777766553    22233455555555555544332111 4


Q ss_pred             ccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 020161          229 ALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT  263 (330)
Q Consensus       229 ~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~  263 (330)
                      +|+.|++++|.+++++.+..+++|++|++++|+++
T Consensus       275 ~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             EEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTT
T ss_pred             CceEEECCCCCCCCChhHhhCCCCCEEeccCCCCC
Confidence            44444444444444433444444444444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=8.3e-22  Score=177.94  Aligned_cols=215  Identities=23%  Similarity=0.337  Sum_probs=158.8

Q ss_pred             cCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161           23 DLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~   99 (330)
                      ..++++|+++++.+..++.  ...+++|++|++++|.+..++. .|.++++|++|++++|.++...   ...|..+++|+
T Consensus        63 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~  139 (440)
T 3zyj_A           63 STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP---NGAFVYLSKLK  139 (440)
T ss_dssp             CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC---TTTSCSCSSCC
T ss_pred             CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC---HhHhhccccCc
Confidence            4789999999999998864  4557999999999999998775 5899999999999999998763   33567899999


Q ss_pred             EEEccCCcCcCCCC--CCCCCcccEEEccCCC-CcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccc
Q 020161          100 ELILRDNKLMKIPD--VSIFKKLSVFDVSFNE-ITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL  175 (330)
Q Consensus       100 ~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  175 (330)
                      +|++++|.+..++.  +..+++|++|++++|. +..++.. ...+++|+.|++++|.+..+..+..+++|+.|++++|.+
T Consensus       140 ~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          140 ELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred             eeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence            99999999998775  7889999999999854 4444432 233677777777777777766667777777777777766


Q ss_pred             cc--cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCC
Q 020161          176 RV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI  240 (330)
Q Consensus       176 ~~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~  240 (330)
                      +.  +..+..+++|+.|++++|.+...   .+..+++|+.|++++|.++..+  .+..+++|+.|++++|.+
T Consensus       220 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          220 SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            52  24466666777777777666555   3555566666666666666553  244556666666666543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=8.2e-22  Score=178.59  Aligned_cols=216  Identities=22%  Similarity=0.313  Sum_probs=157.5

Q ss_pred             ccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCC
Q 020161           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGL   98 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L   98 (330)
                      +..++++|+++++.+.+++.  ...+++|++|++++|.+..++. .|.++++|++|++++|.+....   ...|..+++|
T Consensus        73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L  149 (452)
T 3zyi_A           73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP---SGAFEYLSKL  149 (452)
T ss_dssp             CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC---TTTSSSCTTC
T ss_pred             CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC---hhhhcccCCC
Confidence            35789999999999999854  4557999999999999998764 5899999999999999998763   3346779999


Q ss_pred             cEEEccCCcCcCCCC--CCCCCcccEEEccCCC-CcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcc
Q 020161           99 EELILRDNKLMKIPD--VSIFKKLSVFDVSFNE-ITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR  174 (330)
Q Consensus        99 ~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  174 (330)
                      ++|++++|.++.++.  +..+++|++|++++|. +..++.. ...+++|+.|++++|.+..+..+..+++|+.|++++|.
T Consensus       150 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~  229 (452)
T 3zyi_A          150 RELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNH  229 (452)
T ss_dssp             CEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSC
T ss_pred             CEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCc
Confidence            999999999998775  7889999999999854 4444432 23367777777777777776666667777777777776


Q ss_pred             ccc--cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCC
Q 020161          175 LRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI  240 (330)
Q Consensus       175 ~~~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~  240 (330)
                      ++.  +..+..+++|+.|++++|.+...   .+..+++|+.|++++|.++..+  .+..+++|+.|++++|.+
T Consensus       230 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  302 (452)
T 3zyi_A          230 FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW  302 (452)
T ss_dssp             CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred             CcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence            642  24466666677777766666554   3455566666666666665552  244555666666665543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.89  E-value=3.7e-22  Score=173.11  Aligned_cols=227  Identities=18%  Similarity=0.196  Sum_probs=161.0

Q ss_pred             CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEEE
Q 020161           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFD  124 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~  124 (330)
                      +++++|++++|.+..+|..+.++++|++|++++|.+.. .+   ..+..+++|++|++++|.++.+|. +..+++|++|+
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~-lp---~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLME-LP---DTMQQFAGLETLTLARNPLRALPASIASLNRLRELS  156 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCC-CC---SCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccc-hh---HHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEE
Confidence            67888888888888888777778888888888888773 22   345667888888888888887775 77778888888


Q ss_pred             ccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc-ccccccCCCCCcEEECcCCCcccc--c
Q 020161          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR-VMENLQNLTNLQELWLGRNRIKVV--N  201 (330)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~--~  201 (330)
                      +++|.+.+..+..     +....+       ...+..+++|++|++++|.++ .+..+..+++|++|++++|.+...  .
T Consensus       157 L~~n~~~~~~p~~-----~~~~~~-------~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~  224 (328)
T 4fcg_A          157 IRACPELTELPEP-----LASTDA-------SGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPA  224 (328)
T ss_dssp             EEEETTCCCCCSC-----SEEEC--------CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGG
T ss_pred             CCCCCCccccChh-----Hhhccc-------hhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchh
Confidence            8876544322211     100000       112445666777777777664 334566777777777777776655  4


Q ss_pred             cCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC-C-cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCC
Q 020161          202 LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-M-EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLE  275 (330)
Q Consensus       202 ~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~-~-~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~  275 (330)
                      +..+++|+.|++++|.+.+.  ..+..+++|+.|++++|.+.+ + ..+..+++|++|++++|++.+.  +.+..+++|+
T Consensus       225 l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~  304 (328)
T 4fcg_A          225 IHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANC  304 (328)
T ss_dssp             GGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTC
T ss_pred             hccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCce
Confidence            66677888888888766554  346778889999999887665 3 3577889999999999887655  6788999999


Q ss_pred             eEeCCCCCCCchH
Q 020161          276 DLWLNDNQIESLE  288 (330)
Q Consensus       276 ~L~l~~n~l~~~~  288 (330)
                      .+++..+.+..++
T Consensus       305 ~l~l~~~~~~~l~  317 (328)
T 4fcg_A          305 IILVPPHLQAQLD  317 (328)
T ss_dssp             EEECCGGGSCC--
T ss_pred             EEeCCHHHHHHHh
Confidence            9999988776543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.88  E-value=1.5e-21  Score=169.29  Aligned_cols=229  Identities=20%  Similarity=0.193  Sum_probs=170.2

Q ss_pred             cCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcE
Q 020161           67 HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKE  145 (330)
Q Consensus        67 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  145 (330)
                      ..++++.|++++|.+...    +..+..+++|++|++++|.++.+|. +..+++|++|++++|.+..++.....+++|+.
T Consensus        79 ~~~~l~~L~L~~n~l~~l----p~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQF----PDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRE  154 (328)
T ss_dssp             TSTTCCEEEEESSCCSSC----CSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCE
T ss_pred             cccceeEEEccCCCchhc----ChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCE
Confidence            357788888888877743    2234557888888888888877775 67778888888888877766554445666666


Q ss_pred             EEccCCCCCC-cccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCcccccc
Q 020161          146 LYVSKNEVPK-MEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK  222 (330)
Q Consensus       146 L~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~  222 (330)
                      |++++|...+ +..     .+...       .....+..+++|++|++++|.+...  .+..+++|+.|++++|.+++.+
T Consensus       155 L~L~~n~~~~~~p~-----~~~~~-------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~  222 (328)
T 4fcg_A          155 LSIRACPELTELPE-----PLAST-------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALG  222 (328)
T ss_dssp             EEEEEETTCCCCCS-----CSEEE-------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCC
T ss_pred             EECCCCCCccccCh-----hHhhc-------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCc
Confidence            6666654433 100     00011       0112356689999999999998866  5788899999999999999874


Q ss_pred             -ccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhcc
Q 020161          223 -GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGS  297 (330)
Q Consensus       223 -~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~  297 (330)
                       .+..+++|+.|++++|.+.+.  ..+..+++|++|++++|++.+.  ..+..+++|++|++++|++..   .++..+.+
T Consensus       223 ~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~---~iP~~l~~  299 (328)
T 4fcg_A          223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS---RLPSLIAQ  299 (328)
T ss_dssp             GGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC---CCCGGGGG
T ss_pred             hhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh---hccHHHhh
Confidence             578899999999999988764  4578899999999999987765  568899999999999998763   23456788


Q ss_pred             ccccchhhccCCCcccc
Q 020161          298 RETLTTIYLENNPCKIF  314 (330)
Q Consensus       298 ~~~L~~l~l~~n~~~~~  314 (330)
                      +++|+.+++..+.+...
T Consensus       300 L~~L~~l~l~~~~~~~l  316 (328)
T 4fcg_A          300 LPANCIILVPPHLQAQL  316 (328)
T ss_dssp             SCTTCEEECCGGGSCC-
T ss_pred             ccCceEEeCCHHHHHHH
Confidence            99999999887775444

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=3.9e-22  Score=182.03  Aligned_cols=220  Identities=21%  Similarity=0.279  Sum_probs=173.5

Q ss_pred             ChhhhhhcC----CCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccc
Q 020161           60 SLDSRISHL----SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHG  135 (330)
Q Consensus        60 ~l~~~~~~l----~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~  135 (330)
                      .+|..+..+    ++|++|++++|.+.+..   ...|..+++|++|++++|.+++.+++..+++|++|++++|.+..++.
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~   97 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQIS---AADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLV   97 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCC---GGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCC---HHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCC
Confidence            455554443    47888888888888753   33566788888888888888765557777778887777776654332


Q ss_pred             cccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEE
Q 020161          136 LSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKIS  212 (330)
Q Consensus       136 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~  212 (330)
                                                .++|++|++++|.++.... ..+++|+.|++++|.+.+.   .+..+++|+.|+
T Consensus        98 --------------------------~~~L~~L~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  150 (487)
T 3oja_A           98 --------------------------GPSIETLHAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLD  150 (487)
T ss_dssp             --------------------------CTTCCEEECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEE
T ss_pred             --------------------------CCCcCEEECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEE
Confidence                                      1556677777776654322 3467899999999998876   567789999999


Q ss_pred             CCCCcccccc--ccc-cccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchH
Q 020161          213 LQSNRLTSMK--GFE-ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLE  288 (330)
Q Consensus       213 l~~~~l~~~~--~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~  288 (330)
                      +++|.+++.+  .+. .++.|+.|++++|.+++++....+++|+.|++++|.++++ +.+..+++|+.|++++|.++.++
T Consensus       151 Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp  230 (487)
T 3oja_A          151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE  230 (487)
T ss_dssp             CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred             CCCCCCCCcChHHHhhhCCcccEEecCCCccccccccccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccc
Confidence            9999998762  333 6899999999999999998888899999999999999988 66889999999999999999765


Q ss_pred             HHHHHHhccccccchhhccCCCccc
Q 020161          289 SIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       289 ~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      .    .+..+++|+.|++++|++.+
T Consensus       231 ~----~l~~l~~L~~L~l~~N~l~c  251 (487)
T 3oja_A          231 K----ALRFSQNLEHFDLRGNGFHC  251 (487)
T ss_dssp             T----TCCCCTTCCEEECTTCCBCH
T ss_pred             h----hhccCCCCCEEEcCCCCCcC
Confidence            3    36788999999999999873

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=1.3e-20  Score=159.46  Aligned_cols=215  Identities=24%  Similarity=0.313  Sum_probs=149.2

Q ss_pred             cEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161           27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (330)
Q Consensus        27 ~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  105 (330)
                      ...++.+..+..+|. ..++++++|++++|.++.++. .+.++++|++|++++|.+....   ...+..+++|++|++++
T Consensus        10 ~~~~c~~~~l~~ip~-~l~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           10 ITYQCMELNFYKIPD-NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE---DGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             TEEECTTSCCSSCCS-SSCTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC---TTTTTTCTTCCEEECTT
T ss_pred             ceEEecCCCccccCC-CCCCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC---HHHccCCcCCCEEECCC
Confidence            456778888888886 567899999999999998876 5889999999999999888753   33567789999999999


Q ss_pred             CcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccccccc
Q 020161          106 NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQ  182 (330)
Q Consensus       106 ~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~  182 (330)
                      |.++.++.  +..+++|++|++++|.+..+... ...+++|+.|++++|.+....                   .+..+.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------------------l~~~~~  146 (276)
T 2z62_A           86 NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-------------------LPEYFS  146 (276)
T ss_dssp             CCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCC-------------------CCGGGG
T ss_pred             CccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceec-------------------Cchhhc
Confidence            99887653  77888888888888887765542 222455555555555444310                   123344


Q ss_pred             CCCCCcEEECcCCCcccc---ccCCCCccc----EEECCCCcccccc-ccccccccceEEccCCCCCCCcC--CCCCCCC
Q 020161          183 NLTNLQELWLGRNRIKVV---NLCGLKCIK----KISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEG--LSTLVNL  252 (330)
Q Consensus       183 ~~~~L~~L~l~~~~i~~~---~~~~~~~L~----~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~--~~~~~~L  252 (330)
                      .+++|++|++++|.+...   .+..+++++    .+++++|.++..+ ......+|+.|++++|.+++++.  +..+++|
T Consensus       147 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  226 (276)
T 2z62_A          147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSL  226 (276)
T ss_dssp             GCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSC
T ss_pred             cCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccc
Confidence            455555555555554443   222223333    6777777776653 22334478888888888887643  5778899


Q ss_pred             CEEEcCCCCCCC
Q 020161          253 HVLDVSSNKLTL  264 (330)
Q Consensus       253 ~~L~l~~n~~~~  264 (330)
                      +.|++++|+++.
T Consensus       227 ~~L~l~~N~~~c  238 (276)
T 2z62_A          227 QKIWLHTNPWDC  238 (276)
T ss_dssp             CEEECCSSCBCC
T ss_pred             cEEEccCCcccc
Confidence            999999988763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=1.8e-22  Score=179.20  Aligned_cols=148  Identities=23%  Similarity=0.258  Sum_probs=94.0

Q ss_pred             CCccEEEcCCcccc--cc----ccccCCCCCcEEECcCCCcccc--------ccCCCCcccEEECCCCccccc------c
Q 020161          163 HDLQILEFGSNRLR--VM----ENLQNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSM------K  222 (330)
Q Consensus       163 ~~L~~L~l~~~~~~--~~----~~l~~~~~L~~L~l~~~~i~~~--------~~~~~~~L~~L~l~~~~l~~~------~  222 (330)
                      ++|++|++++|.++  ..    ..+..+++|++|++++|.+...        .+..+++|+.|++++|.++..      .
T Consensus       159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~  238 (386)
T 2ca6_A          159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  238 (386)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence            55666666666553  11    2344556666777766666522        345566677777777766421      2


Q ss_pred             ccccccccceEEccCCCCCCC------cCC--CCCCCCCEEEcCCCCCCC-----c-ccc-ccCCCCCeEeCCCCCCCch
Q 020161          223 GFEECIALEELYLSHNGISKM------EGL--STLVNLHVLDVSSNKLTL-----V-DDI-QNLSRLEDLWLNDNQIESL  287 (330)
Q Consensus       223 ~~~~~~~L~~l~l~~~~~~~~------~~~--~~~~~L~~L~l~~n~~~~-----~-~~~-~~~~~L~~L~l~~n~l~~~  287 (330)
                      .+..+++|+.|++++|.+++.      ..+  ..+++|++|++++|.++.     + ..+ .++++|+.|++++|+++..
T Consensus       239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            356677788888888777653      233  337788888888888887     3 333 5578888888888888866


Q ss_pred             HHHHHHHhccccccchhhccCCC
Q 020161          288 ESIVEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       288 ~~~~~~~~~~~~~L~~l~l~~n~  310 (330)
                      +..+..+...+++++.++++.+.
T Consensus       319 ~~~~~~l~~~l~~~~~~~l~~~d  341 (386)
T 2ca6_A          319 DDVVDEIREVFSTRGRGELDELD  341 (386)
T ss_dssp             SHHHHHHHHHHHHHTCCEECCCC
T ss_pred             hhHHHHHHHHhhhcCcchhhhcc
Confidence            54445555666677666665544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=7.7e-20  Score=154.24  Aligned_cols=193  Identities=27%  Similarity=0.386  Sum_probs=135.2

Q ss_pred             ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE
Q 020161           22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE  100 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~  100 (330)
                      ...+.+.++++++.+..+|. ..++++++|++++|.+..++. .|.++++|++|++++|.+...   ....|..+++|++
T Consensus        14 c~~~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i---~~~~~~~l~~L~~   89 (270)
T 2o6q_A           14 CNNNKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTL---PAGIFKELKNLET   89 (270)
T ss_dssp             EETTTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCC---CTTTTSSCTTCCE
T ss_pred             eCCCCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCee---ChhhhcCCCCCCE
Confidence            34567889999999998885 566889999999999998876 588999999999999988865   2334567899999


Q ss_pred             EEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccc-cccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccc
Q 020161          101 LILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRL  175 (330)
Q Consensus       101 L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~  175 (330)
                      |++++|.++.++.  +..+++|++|++++|.+..+++.. ..+++|+.|++++|.+..+.  .+..+++|++|++++|.+
T Consensus        90 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  169 (270)
T 2o6q_A           90 LWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQL  169 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcC
Confidence            9999999988774  677888999999998887766533 33667777777777666532  255566666666666655


Q ss_pred             cccc--cccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcc
Q 020161          176 RVME--NLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRL  218 (330)
Q Consensus       176 ~~~~--~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l  218 (330)
                      +...  .+..+++|++|++++|.+...   .+..+++|+.|++++|.+
T Consensus       170 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          170 KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             SCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             cEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            4321  244555555555555555443   233444555555555443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.85  E-value=1.6e-20  Score=159.94  Aligned_cols=195  Identities=22%  Similarity=0.239  Sum_probs=157.4

Q ss_pred             hhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcccccCCCCccEEE
Q 020161           91 RWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILE  169 (330)
Q Consensus        91 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~  169 (330)
                      .+..++++++++++++.++.+|. ...+++++|++++|.+..+.+. ...+++|+.|++++|.+..+.....+++|++|+
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~-~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~   83 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLD   83 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEE
T ss_pred             cccccCCccEEECCCCCCCcCCC-CCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEE
Confidence            45678899999999999999885 2237899999999999877643 344788999999999988876668888999999


Q ss_pred             cCCcccccc-ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCC
Q 020161          170 FGSNRLRVM-ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM  243 (330)
Q Consensus       170 l~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~  243 (330)
                      +++|.++.+ ..+..+++|++|++++|.+...   .+..+++|+.|++++|.++..+  .+..+++|+.|++++|.++.+
T Consensus        84 Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  163 (290)
T 1p9a_G           84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (290)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             CCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCcc
Confidence            999988643 4467788899999999888776   4677888999999998888774  366788889999999888887


Q ss_pred             cC--CCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCc
Q 020161          244 EG--LSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       244 ~~--~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      +.  +..+++|++|++++|+++.+ ..+...++|+.+++++|++..
T Consensus       164 ~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             CHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            53  56788899999999988877 556667788889999888774

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.85  E-value=1.1e-22  Score=190.41  Aligned_cols=304  Identities=13%  Similarity=0.093  Sum_probs=186.4

Q ss_pred             cccccccCCCcEEeccCcccccCCC------CCCCCCcCEEecCCCCCC-----ChhhhhhcCCCCCEEeCCCCcCCccc
Q 020161           17 DQAVEIDLSNTVLDLTSFQLHDLDS------VEFPTNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDDAA   85 (330)
Q Consensus        17 ~~~~~~~~~l~~l~l~~~~l~~~~~------~~~~~~L~~L~l~~~~i~-----~l~~~~~~l~~L~~L~l~~~~~~~~~   85 (330)
                      .......+++++|+++++.+.+...      ...+++|++|++++|.+.     .++..+.++++|++|++++|.+.+. 
T Consensus       157 ~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l-  235 (592)
T 3ogk_B          157 LSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILEL-  235 (592)
T ss_dssp             HHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGG-
T ss_pred             HHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHH-
Confidence            3344466899999999998765431      123588999999999886     3444567899999999999877662 


Q ss_pred             cccchhhcccCCCcEEEccCCcCc----CC-CCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc---c
Q 020161           86 IEPISRWDALAGLEELILRDNKLM----KI-PDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM---E  157 (330)
Q Consensus        86 ~~~~~~~~~~~~L~~L~l~~~~l~----~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~  157 (330)
                         ...+..+++|++|+++.....    .. ..+..+++|+.+++.++....++.....+++|++|++++|.+.+.   .
T Consensus       236 ---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~  312 (592)
T 3ogk_B          236 ---VGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT  312 (592)
T ss_dssp             ---HHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHH
T ss_pred             ---HHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHH
Confidence               234567788888888743211    11 124556666677666655444554444566677777766664331   1


Q ss_pred             cccCCCCccEEEcCCc-----------------------------------cccc--c-ccccCCCCCcEEECcCCCccc
Q 020161          158 EIEHFHDLQILEFGSN-----------------------------------RLRV--M-ENLQNLTNLQELWLGRNRIKV  199 (330)
Q Consensus       158 ~~~~~~~L~~L~l~~~-----------------------------------~~~~--~-~~l~~~~~L~~L~l~~~~i~~  199 (330)
                      .+..+++|+.|+++++                                   .++.  + .....+++|++|++.++.+++
T Consensus       313 ~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~  392 (592)
T 3ogk_B          313 LIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITN  392 (592)
T ss_dssp             HHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCH
T ss_pred             HHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccH
Confidence            2345555555555421                                   2210  0 111234455555554444443


Q ss_pred             c---ccC-CCCcccEEECC----CCcccccc-------ccccccccceEEccCCC--CCCC--cCC-CCCCCCCEEEcCC
Q 020161          200 V---NLC-GLKCIKKISLQ----SNRLTSMK-------GFEECIALEELYLSHNG--ISKM--EGL-STLVNLHVLDVSS  259 (330)
Q Consensus       200 ~---~~~-~~~~L~~L~l~----~~~l~~~~-------~~~~~~~L~~l~l~~~~--~~~~--~~~-~~~~~L~~L~l~~  259 (330)
                      .   .+. .+++|+.|++.    .+.+++.+       .+..+++|+.|++++|.  +++.  ..+ ..+++|+.|++++
T Consensus       393 ~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~  472 (592)
T 3ogk_B          393 ESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY  472 (592)
T ss_dssp             HHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECS
T ss_pred             HHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccC
Confidence            3   111 24556666663    34444321       13446677777775433  3321  112 3467899999999


Q ss_pred             CCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccccccccccccCCCCC
Q 020161          260 NKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKY  327 (330)
Q Consensus       260 n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~p~~  327 (330)
                      |++++.   ..+..+++|++|++++|++++  ..+......+++|+.|++++|++++.....+ ...+|.+
T Consensus       473 n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l-~~~~p~l  540 (592)
T 3ogk_B          473 VGESDEGLMEFSRGCPNLQKLEMRGCCFSE--RAIAAAVTKLPSLRYLWVQGYRASMTGQDLM-QMARPYW  540 (592)
T ss_dssp             CCSSHHHHHHHHTCCTTCCEEEEESCCCBH--HHHHHHHHHCSSCCEEEEESCBCCTTCTTGG-GGCCTTE
T ss_pred             CCCCHHHHHHHHhcCcccCeeeccCCCCcH--HHHHHHHHhcCccCeeECcCCcCCHHHHHHH-HHhCCCc
Confidence            998864   445788999999999999864  3455666788999999999999776544333 3346654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.85  E-value=6.4e-20  Score=155.24  Aligned_cols=211  Identities=21%  Similarity=0.260  Sum_probs=155.2

Q ss_pred             EEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccC
Q 020161           50 ELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSF  127 (330)
Q Consensus        50 ~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~  127 (330)
                      ..+..+.++..+|..+.  ++|++|++++|.+....+   ..+..+++|++|++++|.++.++.  +..+++|++|++++
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~   85 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGS---YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTG   85 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECT---TTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCH---hHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCC
Confidence            45666667777776442  578888888888877532   245667888888888888776654  66677777777777


Q ss_pred             CCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc----c
Q 020161          128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV----N  201 (330)
Q Consensus       128 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~----~  201 (330)
                      |.+..+..                     ..+..+++|++|++++|.+...  ..+..+++|++|++++|.+...    .
T Consensus        86 n~l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~  144 (276)
T 2z62_A           86 NPIQSLAL---------------------GAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY  144 (276)
T ss_dssp             CCCCEECT---------------------TTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGG
T ss_pred             CccCccCh---------------------hhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchh
Confidence            76654432                     2345556666666666665433  2366778888888888887653    5


Q ss_pred             cCCCCcccEEECCCCcccccc--ccccccccc----eEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCCCc--cccccCC
Q 020161          202 LCGLKCIKKISLQSNRLTSMK--GFEECIALE----ELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLV--DDIQNLS  272 (330)
Q Consensus       202 ~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~----~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~--~~~~~~~  272 (330)
                      +..+++|+.|++++|.+++.+  .+..++.++    .+++++|.+++++ ......+|++|++++|+++.+  ..+..++
T Consensus       145 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  224 (276)
T 2z62_A          145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT  224 (276)
T ss_dssp             GGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred             hccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccc
Confidence            778899999999999998773  455666666    8999999999874 344455899999999999988  3468899


Q ss_pred             CCCeEeCCCCCCCc
Q 020161          273 RLEDLWLNDNQIES  286 (330)
Q Consensus       273 ~L~~L~l~~n~l~~  286 (330)
                      +|+.|++++|+++.
T Consensus       225 ~L~~L~l~~N~~~c  238 (276)
T 2z62_A          225 SLQKIWLHTNPWDC  238 (276)
T ss_dssp             SCCEEECCSSCBCC
T ss_pred             cccEEEccCCcccc
Confidence            99999999999884

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=3.1e-19  Score=151.92  Aligned_cols=193  Identities=21%  Similarity=0.234  Sum_probs=160.5

Q ss_pred             hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCC
Q 020161           65 ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDT  142 (330)
Q Consensus        65 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  142 (330)
                      +..++++++++++++.++....    .+  .+.++.|++++|.++.++.  +..+++|++|++++|.+..++.. ..+++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~----~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~   78 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP----DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPV   78 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS----CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTT
T ss_pred             ccccCCccEEECCCCCCCcCCC----CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCc
Confidence            5678899999999998886421    11  3689999999999987653  78899999999999999887764 56789


Q ss_pred             CcEEEccCCCCCCc-ccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCC
Q 020161          143 LKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSN  216 (330)
Q Consensus       143 L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~  216 (330)
                      |+.|++++|.+..+ ..+..+++|++|++++|.++..  ..+..+++|++|++++|.+...   .+..+++|+.|++++|
T Consensus        79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            99999999998875 4467889999999999998744  4578899999999999988876   3677889999999999


Q ss_pred             cccccc--ccccccccceEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCCC
Q 020161          217 RLTSMK--GFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTL  264 (330)
Q Consensus       217 ~l~~~~--~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~  264 (330)
                      +++..+  .+..+++|+.|++++|.++.++ .+....+|+.+++++|++.-
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence            999885  3677899999999999999874 46677799999999998763

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.84  E-value=3.7e-20  Score=156.33  Aligned_cols=206  Identities=21%  Similarity=0.321  Sum_probs=119.9

Q ss_pred             CCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEcc
Q 020161           70 NLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS  149 (330)
Q Consensus        70 ~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  149 (330)
                      ++..+++..+.+.+.     .....+++|+.|+++++.+..++.+..+++|++|++++|.+..++ ....+++|+.|+++
T Consensus        20 ~l~~l~l~~~~~~~~-----~~~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           20 ETIKANLKKKSVTDA-----VTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHHTCSCTTSE-----ECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECT
T ss_pred             HHHHHHhcCcccccc-----cccccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECC
Confidence            334455555555442     234567888888888888887777777888888888887776543 12234555555555


Q ss_pred             CCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccccc--c
Q 020161          150 KNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--F  224 (330)
Q Consensus       150 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~--~  224 (330)
                      +|.+.....                    ..+..+++|++|++++|.+...   .+..+++|++|++++|.+++.+.  +
T Consensus        94 ~n~l~~~~~--------------------~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  153 (272)
T 3rfs_A           94 GNQLQSLPN--------------------GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVF  153 (272)
T ss_dssp             TSCCCCCCT--------------------TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             CCccCccCh--------------------hHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHh
Confidence            555544221                    1134444455555555444433   14445556666666655555532  4


Q ss_pred             ccccccceEEccCCCCCCCcC--CCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccc
Q 020161          225 EECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET  300 (330)
Q Consensus       225 ~~~~~L~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  300 (330)
                      ..+++|+.|++++|.+++++.  +..+++|++|++++|++++.  ..+..+++|+.|++++|++..          .|++
T Consensus       154 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----------~~~~  223 (272)
T 3rfs_A          154 DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----------TCPG  223 (272)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC----------CTTT
T ss_pred             ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc----------cCcH
Confidence            556666666666666666533  45666677777777766665  235666677777777776552          2455


Q ss_pred             cchhhccCCCc
Q 020161          301 LTTIYLENNPC  311 (330)
Q Consensus       301 L~~l~l~~n~~  311 (330)
                      |+.+++.+|.+
T Consensus       224 l~~l~~~~n~~  234 (272)
T 3rfs_A          224 IRYLSEWINKH  234 (272)
T ss_dssp             THHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            66655555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.84  E-value=3.8e-20  Score=157.74  Aligned_cols=170  Identities=23%  Similarity=0.401  Sum_probs=92.9

Q ss_pred             ccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc
Q 020161           94 ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN  173 (330)
Q Consensus        94 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  173 (330)
                      .+++|++|++++|.+..++.+..+++|++|++++|.+..+.+ ...+++|+.|++++|.+..+..+..+++|++|++++|
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n  122 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHN  122 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTS
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCC
Confidence            345555555555555555445555555555555555554443 2334455555555555555444555666666666666


Q ss_pred             cccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCC
Q 020161          174 RLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNL  252 (330)
Q Consensus       174 ~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L  252 (330)
                      .++.++.+..+++|+.|++++|.+.+. .+..+++|+.|++++|.+++.+.+..+++|+.|++++|.+++++.+..+++|
T Consensus       123 ~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~l~~l~~l~~L  202 (291)
T 1h6t_A          123 GISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNL  202 (291)
T ss_dssp             CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGTTCTTC
T ss_pred             cCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCCChhhccCCCC
Confidence            655555555555666666665555444 3444555555555555555554455555555555555555555555555556


Q ss_pred             CEEEcCCCCCCC
Q 020161          253 HVLDVSSNKLTL  264 (330)
Q Consensus       253 ~~L~l~~n~~~~  264 (330)
                      +.|++++|+++.
T Consensus       203 ~~L~l~~n~i~~  214 (291)
T 1h6t_A          203 DVLELFSQECLN  214 (291)
T ss_dssp             SEEEEEEEEEEC
T ss_pred             CEEECcCCcccC
Confidence            666665555543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.83  E-value=5.3e-19  Score=149.09  Aligned_cols=193  Identities=25%  Similarity=0.378  Sum_probs=133.9

Q ss_pred             CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEE
Q 020161           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVF  123 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L  123 (330)
                      ...+++++++++++.+|..+.  ++++.|++++|.+....   ...|..+++|++|++++|.++.++.  +..+++|++|
T Consensus        16 ~~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLP---SKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCC---TTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeC---HHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            457889999999988886543  67899999998888753   2356678889999999888887775  5678888888


Q ss_pred             EccCCCCcCccccc-cccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc--
Q 020161          124 DVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--  200 (330)
Q Consensus       124 ~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--  200 (330)
                      ++++|.+..++... ..+++|+.|++++|.+..+.                    ...+..+++|++|++++|.+...  
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------~~~~~~l~~L~~L~Ls~n~l~~~~~  150 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLP--------------------PRVFDSLTKLTYLSLGYNELQSLPK  150 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCC--------------------TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeC--------------------HHHhCcCcCCCEEECCCCcCCccCH
Confidence            88888777655422 22455555555555444421                    12244555566666666555544  


Q ss_pred             -ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCC
Q 020161          201 -NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLT  263 (330)
Q Consensus       201 -~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~  263 (330)
                       .+..+++|+.|++++|.++..+  .+..+++|+.|++++|.+++++  .+..+++|+.|++++|++.
T Consensus       151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence             2455667777777777776663  3667788888888888888764  3677888999999988764

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=4.4e-20  Score=158.92  Aligned_cols=224  Identities=18%  Similarity=0.206  Sum_probs=106.6

Q ss_pred             CCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCC-C-C--CCCCcccEEEccCCCCcCcccc-----ccc
Q 020161           69 SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIP-D-V--SIFKKLSVFDVSFNEITSSHGL-----SNV  139 (330)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~-~--~~~~~L~~L~l~~~~~~~~~~~-----~~~  139 (330)
                      ..++.+.+.++.+.......+..+..+++|++|++++|.+.+.. . +  ..+++|++|++++|.+......     ...
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            34556666665554432222222333456777777777666432 2 3  5566777777777766542210     012


Q ss_pred             cCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCccccccCCCCcccEEECCCCc
Q 020161          140 TDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNR  217 (330)
Q Consensus       140 ~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~  217 (330)
                      +++|+.|++++|.+...  ..+..+++|++|++++|.+.....+..               ...+..+++|++|++++|.
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~---------------~~~~~~l~~L~~L~Ls~N~  208 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMA---------------ALCPHKFPAIQNLALRNTG  208 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHT---------------TSCTTSSCCCCSCBCCSSC
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhH---------------HHhhhcCCCCCEEECCCCC
Confidence            44555555555554432  234444455555555544321000000               0011234445555555554


Q ss_pred             cccccc-----cccccccceEEccCCCCCCC--cCCCCC---CCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCch
Q 020161          218 LTSMKG-----FEECIALEELYLSHNGISKM--EGLSTL---VNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESL  287 (330)
Q Consensus       218 l~~~~~-----~~~~~~L~~l~l~~~~~~~~--~~~~~~---~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~  287 (330)
                      ++..+.     +..+++|++|++++|.+++.  +.+..+   ++|++|++++|+++.++... .++|++|++++|+++.+
T Consensus       209 l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~  287 (310)
T 4glp_A          209 METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRA  287 (310)
T ss_dssp             CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSC
T ss_pred             CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCC
Confidence            443321     23445555555555555543  222222   45666666666665442211 25666666666666644


Q ss_pred             HHHHHHHhccccccchhhccCCCccc
Q 020161          288 ESIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       288 ~~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      +.     +..+++|+.|++++|++++
T Consensus       288 ~~-----~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          288 PQ-----PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CC-----TTSCCCCSCEECSSTTTSC
T ss_pred             ch-----hhhCCCccEEECcCCCCCC
Confidence            21     3445666666666666543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.83  E-value=8.5e-21  Score=177.71  Aligned_cols=287  Identities=14%  Similarity=0.034  Sum_probs=185.6

Q ss_pred             CCCcEEeccCcc-ccc--CCC-CCCCCCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCcCCccccccchh-hc
Q 020161           24 LSNTVLDLTSFQ-LHD--LDS-VEFPTNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDDAAIEPISR-WD   93 (330)
Q Consensus        24 ~~l~~l~l~~~~-l~~--~~~-~~~~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~   93 (330)
                      .++++|+++++. +..  ++. ...+++|++|++++|.+..     ++..+..+++|++|++++|.+.+.....+.. +.
T Consensus       138 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~  217 (592)
T 3ogk_B          138 DDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR  217 (592)
T ss_dssp             GGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHH
T ss_pred             ccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHh
Confidence            359999998876 221  111 1246899999999998763     4445678999999999999987443223332 46


Q ss_pred             ccCCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCc----CccccccccCCCcEEEccCCCCCCc-ccccCCCCccE
Q 020161           94 ALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEIT----SSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQI  167 (330)
Q Consensus        94 ~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~  167 (330)
                      .+++|++|++++|.+.+++. +..+++|++|+++.....    ........+++|+.+.+..+....+ ..+..+++|++
T Consensus       218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~  297 (592)
T 3ogk_B          218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRK  297 (592)
T ss_dssp             HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCE
T ss_pred             hCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcE
Confidence            78999999999999888765 677899999999864322    1122233478899999988654443 34667889999


Q ss_pred             EEcCCcccccc---ccccCCCCCcEEECcCCCcccc----ccCCCCcccEEECC--------------------------
Q 020161          168 LEFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQ--------------------------  214 (330)
Q Consensus       168 L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~--------------------------  214 (330)
                      |++++|.++..   ..+..+++|+.|+++ +.+.+.    ....+++|++|++.                          
T Consensus       298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~  376 (592)
T 3ogk_B          298 LDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG  376 (592)
T ss_dssp             EEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred             EecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence            99999886421   224566666666665 222222    12334455555555                          


Q ss_pred             ----------CCccccc--cccc-cccccceEEcc----CCCCCCCc-------CCCCCCCCCEEEcCCCC--CCCc--c
Q 020161          215 ----------SNRLTSM--KGFE-ECIALEELYLS----HNGISKME-------GLSTLVNLHVLDVSSNK--LTLV--D  266 (330)
Q Consensus       215 ----------~~~l~~~--~~~~-~~~~L~~l~l~----~~~~~~~~-------~~~~~~~L~~L~l~~n~--~~~~--~  266 (330)
                                .+.+++.  ..+. .+++|+.|+++    .+.+++.+       .+..+++|+.|++++|.  +++.  .
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~  456 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLS  456 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHH
Confidence                      3333322  1111 24555555554    33344321       12346677777776543  4433  2


Q ss_pred             c-cccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161          267 D-IQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       267 ~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      . ...+++|++|++++|++++  ..++..+..|++|+.|++++|++++
T Consensus       457 ~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~~~~~L~~L~l~~n~l~~  502 (592)
T 3ogk_B          457 YIGQYSPNVRWMLLGYVGESD--EGLMEFSRGCPNLQKLEMRGCCFSE  502 (592)
T ss_dssp             HHHHSCTTCCEEEECSCCSSH--HHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred             HHHHhCccceEeeccCCCCCH--HHHHHHHhcCcccCeeeccCCCCcH
Confidence            2 2347889999999999885  3456677889999999999999654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.83  E-value=5.3e-20  Score=156.85  Aligned_cols=187  Identities=20%  Similarity=0.302  Sum_probs=155.1

Q ss_pred             EEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccc
Q 020161          100 ELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVME  179 (330)
Q Consensus       100 ~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~  179 (330)
                      .+.+....+..+.....+++|++|++++|.+..++. ...+++|+.|++++|.+.+...+..+++|++|++++|.++.++
T Consensus        28 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~  106 (291)
T 1h6t_A           28 KDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLS  106 (291)
T ss_dssp             HHHTTCSCTTSEECHHHHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGG
T ss_pred             HHHhcCCCcccccchhhcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCCh
Confidence            344555555555555678889999999998887754 4447889999999999888766888999999999999888777


Q ss_pred             cccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcC
Q 020161          180 NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVS  258 (330)
Q Consensus       180 ~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~  258 (330)
                      .+..+++|++|++++|.+.+. .+..+++|+.|++++|.++..+.+..+++|+.|++++|.+++++.+..+++|+.|+++
T Consensus       107 ~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~  186 (291)
T 1h6t_A          107 SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS  186 (291)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECC
T ss_pred             hhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECC
Confidence            788889999999999988776 5777888999999999888887788888999999999988888668888899999999


Q ss_pred             CCCCCCccccccCCCCCeEeCCCCCCCch
Q 020161          259 SNKLTLVDDIQNLSRLEDLWLNDNQIESL  287 (330)
Q Consensus       259 ~n~~~~~~~~~~~~~L~~L~l~~n~l~~~  287 (330)
                      +|.+++++.+..+++|+.|++++|+++..
T Consensus       187 ~N~i~~l~~l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          187 KNHISDLRALAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             SSCCCBCGGGTTCTTCSEEEEEEEEEECC
T ss_pred             CCcCCCChhhccCCCCCEEECcCCcccCC
Confidence            99988887788888999999999887754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.83  E-value=1.6e-19  Score=152.49  Aligned_cols=171  Identities=27%  Similarity=0.464  Sum_probs=147.0

Q ss_pred             cCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCC
Q 020161          140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSN  216 (330)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~  216 (330)
                      +++++.|++.++.+..+..+..+++|++|++++|.++.+..+..+++|++|++++|.+...   .+..+++|++|++++|
T Consensus        40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n  119 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVEN  119 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCC
Confidence            5667777777777777667778888999999988887777888899999999999988877   3688899999999999


Q ss_pred             ccccccc--cccccccceEEccCCCCCCCcC--CCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHH
Q 020161          217 RLTSMKG--FEECIALEELYLSHNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESI  290 (330)
Q Consensus       217 ~l~~~~~--~~~~~~L~~l~l~~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~  290 (330)
                      .+++.+.  +..+++|+.|++++|.+++++.  +..+++|++|++++|++++.  ..+..+++|++|++++|+++.++  
T Consensus       120 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--  197 (272)
T 3rfs_A          120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVP--  197 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC--
T ss_pred             cCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccC--
Confidence            9998853  7889999999999999998754  78899999999999999988  34788999999999999999765  


Q ss_pred             HHHHhccccccchhhccCCCccc
Q 020161          291 VEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       291 ~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                       +..+..+++|+.|++++|++.+
T Consensus       198 -~~~~~~l~~L~~L~l~~N~~~~  219 (272)
T 3rfs_A          198 -DGVFDRLTSLQYIWLHDNPWDC  219 (272)
T ss_dssp             -TTTTTTCTTCCEEECCSSCBCC
T ss_pred             -HHHHhCCcCCCEEEccCCCccc
Confidence             4557889999999999999654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.82  E-value=1.6e-19  Score=149.45  Aligned_cols=198  Identities=17%  Similarity=0.245  Sum_probs=135.2

Q ss_pred             cccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCc-CCccccccchhhcccCCCcEEEccC-CcCcCCC
Q 020161           36 LHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNL-IDDAAIEPISRWDALAGLEELILRD-NKLMKIP  112 (330)
Q Consensus        36 l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~  112 (330)
                      +..+|.  +++++++|++++|+++.++. .|.++++|++|++++|. +....   ...|..+++|++|++++ |.++.++
T Consensus        23 l~~ip~--~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~---~~~f~~l~~L~~L~l~~~n~l~~i~   97 (239)
T 2xwt_C           23 IQRIPS--LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE---SHSFYNLSKVTHIEIRNTRNLTYID   97 (239)
T ss_dssp             CSSCCC--CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC---TTTEESCTTCCEEEEEEETTCCEEC
T ss_pred             ccccCC--CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC---HhHcCCCcCCcEEECCCCCCeeEcC
Confidence            777776  77799999999999998877 58889999999999996 77652   33566788999999987 8888776


Q ss_pred             C--CCCCCcccEEEccCCCCcCccccccccCCCc---EEEccCC-CCCCcccccCCCCccEEEcCCccccccccccCCCC
Q 020161          113 D--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLK---ELYVSKN-EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTN  186 (330)
Q Consensus       113 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~  186 (330)
                      .  +..+++|++|++++|.+..++. ...+.+|+   .|++++| .+..+.                    ...+..+++
T Consensus        98 ~~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~--------------------~~~~~~l~~  156 (239)
T 2xwt_C           98 PDALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIP--------------------VNAFQGLCN  156 (239)
T ss_dssp             TTSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEEC--------------------TTTTTTTBS
T ss_pred             HHHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcC--------------------cccccchhc
Confidence            4  5677888888888887766554 22233343   4444444 333321                    112445556


Q ss_pred             Cc-EEECcCCCcccc---ccCCCCcccEEECCCCc-ccccc--ccccc-cccceEEccCCCCCCCcCCCCCCCCCEEEcC
Q 020161          187 LQ-ELWLGRNRIKVV---NLCGLKCIKKISLQSNR-LTSMK--GFEEC-IALEELYLSHNGISKMEGLSTLVNLHVLDVS  258 (330)
Q Consensus       187 L~-~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~-l~~~~--~~~~~-~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~  258 (330)
                      |+ +|++++|.+...   .+.. ++|+.|++++|. ++..+  .+..+ ++|+.|++++|.++.++.. .+++|+.|.++
T Consensus       157 L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~  234 (239)
T 2xwt_C          157 ETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIAR  234 (239)
T ss_dssp             SEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECT
T ss_pred             ceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh-HhccCceeecc
Confidence            66 666666655544   2222 567777777773 66653  35666 7888888888888877643 67788888887


Q ss_pred             CCC
Q 020161          259 SNK  261 (330)
Q Consensus       259 ~n~  261 (330)
                      ++.
T Consensus       235 ~~~  237 (239)
T 2xwt_C          235 NTW  237 (239)
T ss_dssp             TC-
T ss_pred             Ccc
Confidence            763

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=2.3e-20  Score=164.19  Aligned_cols=237  Identities=15%  Similarity=0.133  Sum_probs=142.2

Q ss_pred             EecCCCCCCChhhhhhc-CCCCCEEeCCCCcCCccccccc-hhhcccC-CCcEEEccCCcCcCCCC--CCCC-----Ccc
Q 020161           51 LDLTANRLTSLDSRISH-LSNLKKLSLRQNLIDDAAIEPI-SRWDALA-GLEELILRDNKLMKIPD--VSIF-----KKL  120 (330)
Q Consensus        51 L~l~~~~i~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~-~L~~L~l~~~~l~~~~~--~~~~-----~~L  120 (330)
                      +.++.|.++...+.+.. .++|++|++++|.+.+..+..+ ..+..++ +|++|++++|.++....  +..+     ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            44556666644333333 3346666666666655432111 2344455 56666666666654321  2221     566


Q ss_pred             cEEEccCCCCcCcccc-----cccc-CCCcEEEccCCCCCCcc------cccC-CCCccEEEcCCcccccc------ccc
Q 020161          121 SVFDVSFNEITSSHGL-----SNVT-DTLKELYVSKNEVPKME------EIEH-FHDLQILEFGSNRLRVM------ENL  181 (330)
Q Consensus       121 ~~L~l~~~~~~~~~~~-----~~~~-~~L~~L~l~~~~~~~~~------~~~~-~~~L~~L~l~~~~~~~~------~~l  181 (330)
                      ++|++++|.+......     ...+ ++|+.|++++|.+....      .+.. .++|++|++++|.++..      ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            6666666665543221     1112 56777777777665521      1334 35888899988887521      223


Q ss_pred             cCCC-CCcEEECcCCCccccc-------cCCC-CcccEEECCCCccccc------ccccc-ccccceEEccCCCCCCCc-
Q 020161          182 QNLT-NLQELWLGRNRIKVVN-------LCGL-KCIKKISLQSNRLTSM------KGFEE-CIALEELYLSHNGISKME-  244 (330)
Q Consensus       182 ~~~~-~L~~L~l~~~~i~~~~-------~~~~-~~L~~L~l~~~~l~~~------~~~~~-~~~L~~l~l~~~~~~~~~-  244 (330)
                      ...+ +|++|++++|.+.+..       +... ++|+.|++++|.++..      ..+.. +++|+.|++++|.+++.. 
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            4444 8888888888876552       2334 4788888888888763      12333 457888888888887642 


Q ss_pred             -----CCCCCCCCCEEEcCCCCCCCc---------cccccCCCCCeEeCCCCCCCch
Q 020161          245 -----GLSTLVNLHVLDVSSNKLTLV---------DDIQNLSRLEDLWLNDNQIESL  287 (330)
Q Consensus       245 -----~~~~~~~L~~L~l~~n~~~~~---------~~~~~~~~L~~L~l~~n~l~~~  287 (330)
                           .+..+++|++|++++|.+..+         ..+..+++|++|++++|++.+.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                 356677888888888874433         2455667788888888887754

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=6e-19  Score=151.82  Aligned_cols=220  Identities=20%  Similarity=0.153  Sum_probs=147.8

Q ss_pred             CCcCEEecCCCCCCC--hhh--hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCC-C-----CCC
Q 020161           46 TNLTELDLTANRLTS--LDS--RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI-P-----DVS  115 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~--l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~-----~~~  115 (330)
                      ..++.+.+.++.+..  +..  .+..+++|++|++++|.+.+..+..+.. ..+++|++|++++|.++.. +     .+.
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLE-ATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSS-CCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhh-ccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            357888998888762  222  2345678999999999998875443211 5789999999999998852 2     145


Q ss_pred             CCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCc------ccccCCCCccEEEcCCcccccccc-----ccC
Q 020161          116 IFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM------EEIEHFHDLQILEFGSNRLRVMEN-----LQN  183 (330)
Q Consensus       116 ~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~------~~~~~~~~L~~L~l~~~~~~~~~~-----l~~  183 (330)
                      .+++|++|++++|.+...++. ...+++|+.|++++|.+.+.      ..+..+++|++|++++|.++.++.     +..
T Consensus       143 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~  222 (310)
T 4glp_A          143 LKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA  222 (310)
T ss_dssp             BCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH
T ss_pred             hccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc
Confidence            689999999999999887754 34589999999999986541      123566777777777777654322     245


Q ss_pred             CCCCcEEECcCCCccccc---cCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCC
Q 020161          184 LTNLQELWLGRNRIKVVN---LCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN  260 (330)
Q Consensus       184 ~~~L~~L~l~~~~i~~~~---~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n  260 (330)
                      +++|++|++++|.+.+..   +..+                   ..+++|+.|++++|.++.++... .++|++|++++|
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~-------------------~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N  282 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRC-------------------MWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSN  282 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSC-------------------CCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSC
T ss_pred             CCCCCEEECCCCCCCccchhhHHhc-------------------cCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCC
Confidence            556666666666554431   1111                   12256666666666666554322 257777777777


Q ss_pred             CCCCccccccCCCCCeEeCCCCCCCc
Q 020161          261 KLTLVDDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       261 ~~~~~~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      ++++++.+..+++|+.|++++|++++
T Consensus       283 ~l~~~~~~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          283 RLNRAPQPDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred             cCCCCchhhhCCCccEEECcCCCCCC
Confidence            77776556667777777777777764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.80  E-value=6.1e-20  Score=161.46  Aligned_cols=237  Identities=17%  Similarity=0.239  Sum_probs=161.8

Q ss_pred             EeccCcccccCC-C-CCCCCCcCEEecCCCCCCChh-----hhhhcCC-CCCEEeCCCCcCCccccccchh-hccc-CCC
Q 020161           29 LDLTSFQLHDLD-S-VEFPTNLTELDLTANRLTSLD-----SRISHLS-NLKKLSLRQNLIDDAAIEPISR-WDAL-AGL   98 (330)
Q Consensus        29 l~l~~~~l~~~~-~-~~~~~~L~~L~l~~~~i~~l~-----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~-~~~~-~~L   98 (330)
                      .+++.+.+++.. . ...+++|++|++++|.+...+     ..+.+++ +|++|++++|.+.+..+..+.. +... ++|
T Consensus         3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L   82 (362)
T 3goz_A            3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV   82 (362)
T ss_dssp             EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred             cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence            345555555432 1 234556888888888877554     3466777 7888888888877764333322 1222 788


Q ss_pred             cEEEccCCcCcCCCC------CCCC-CcccEEEccCCCCcCccccc-----cc-cCCCcEEEccCCCCCCc------ccc
Q 020161           99 EELILRDNKLMKIPD------VSIF-KKLSVFDVSFNEITSSHGLS-----NV-TDTLKELYVSKNEVPKM------EEI  159 (330)
Q Consensus        99 ~~L~l~~~~l~~~~~------~~~~-~~L~~L~l~~~~~~~~~~~~-----~~-~~~L~~L~l~~~~~~~~------~~~  159 (330)
                      ++|++++|.++..+.      +..+ ++|++|++++|.+.......     .. +.+|+.|++++|.+...      ..+
T Consensus        83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l  162 (362)
T 3goz_A           83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL  162 (362)
T ss_dssp             CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred             cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence            888888888775432      2333 67888888888876544311     11 35788888888887752      223


Q ss_pred             cCCC-CccEEEcCCcccccc------ccccCC-CCCcEEECcCCCcccc-------ccCC-CCcccEEECCCCcccccc-
Q 020161          160 EHFH-DLQILEFGSNRLRVM------ENLQNL-TNLQELWLGRNRIKVV-------NLCG-LKCIKKISLQSNRLTSMK-  222 (330)
Q Consensus       160 ~~~~-~L~~L~l~~~~~~~~------~~l~~~-~~L~~L~l~~~~i~~~-------~~~~-~~~L~~L~l~~~~l~~~~-  222 (330)
                      ...+ +|++|++++|.++..      ..+..+ ++|++|++++|.+.+.       .+.. .++|+.|++++|.++..+ 
T Consensus       163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~  242 (362)
T 3goz_A          163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL  242 (362)
T ss_dssp             HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred             hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence            4444 899999999888532      234455 4899999999988773       2333 458999999999888763 


Q ss_pred             -----ccccccccceEEccCCCCCCC---------cCCCCCCCCCEEEcCCCCCCCc
Q 020161          223 -----GFEECIALEELYLSHNGISKM---------EGLSTLVNLHVLDVSSNKLTLV  265 (330)
Q Consensus       223 -----~~~~~~~L~~l~l~~~~~~~~---------~~~~~~~~L~~L~l~~n~~~~~  265 (330)
                           .+..++.|+.|++++|.+.++         ..+..+++|+.|++++|++.+.
T Consensus       243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence                 246778899999999985543         3577888999999999998765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.80  E-value=6.3e-19  Score=164.12  Aligned_cols=188  Identities=21%  Similarity=0.304  Sum_probs=95.7

Q ss_pred             CcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEcc
Q 020161           47 NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVS  126 (330)
Q Consensus        47 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~  126 (330)
                      .+..+.++.+.+..+.. +..+++|+.|++++|.+...     ..+..+++|+.|+|++|.+..++++..+++|++|+++
T Consensus        22 ~l~~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l-----~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCC-----TTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECC
T ss_pred             HHHHHhccCCCcccccc-hhcCCCCCEEECcCCCCCCC-----hHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECc
Confidence            34445555555554432 45566666667766666543     2345566666666666666665555566666666666


Q ss_pred             CCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCC
Q 020161          127 FNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGL  205 (330)
Q Consensus       127 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~  205 (330)
                      +|.+..++. ...+++|+.|++++|.+..+..+..+++|+.|++++|.++.+..+..+++|+.|++++|.+.+. ++..+
T Consensus        96 ~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l  174 (605)
T 1m9s_A           96 ENKIKDLSS-LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGL  174 (605)
T ss_dssp             SSCCCCCTT-STTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTC
T ss_pred             CCCCCCChh-hccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccC
Confidence            666555432 2224455555555555544444444455555555555444334444444444444444444333 33344


Q ss_pred             CcccEEECCCCccccccccccccccceEEccCCCCC
Q 020161          206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS  241 (330)
Q Consensus       206 ~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~  241 (330)
                      ++|+.|++++|.++..+.+..+++|+.|++++|.+.
T Consensus       175 ~~L~~L~Ls~N~i~~l~~l~~l~~L~~L~L~~N~l~  210 (605)
T 1m9s_A          175 TKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECL  210 (605)
T ss_dssp             TTCCEEECCSSCCCBCGGGTTCTTCSEEECCSEEEE
T ss_pred             CCCCEEECcCCCCCCChHHccCCCCCEEEccCCcCc
Confidence            444444444444444433444444444444444433

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1e-18  Score=144.67  Aligned_cols=192  Identities=16%  Similarity=0.187  Sum_probs=148.0

Q ss_pred             ccCCCcEEeccCcccccCCC--CCCCCCcCEEecCCCC-CCChhh-hhhcCCCCCEEeCCC-CcCCccccccchhhcccC
Q 020161           22 IDLSNTVLDLTSFQLHDLDS--VEFPTNLTELDLTANR-LTSLDS-RISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALA   96 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~--~~~~~~L~~L~l~~~~-i~~l~~-~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~   96 (330)
                      ...++++|+++++.+.+++.  ...+++|++|++++|. ++.++. .|.++++|++|++++ |.+....   ...|..++
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~---~~~f~~l~  105 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID---PDALKELP  105 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC---TTSEECCT
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC---HHHhCCCC
Confidence            45689999999999999876  3457999999999997 988887 588999999999998 8888763   34567899


Q ss_pred             CCcEEEccCCcCcCCCCCCCCCccc---EEEccCC-CCcCcccc-ccccCCCc-EEEccCCCCCCcc-cccCCCCccEEE
Q 020161           97 GLEELILRDNKLMKIPDVSIFKKLS---VFDVSFN-EITSSHGL-SNVTDTLK-ELYVSKNEVPKME-EIEHFHDLQILE  169 (330)
Q Consensus        97 ~L~~L~l~~~~l~~~~~~~~~~~L~---~L~l~~~-~~~~~~~~-~~~~~~L~-~L~l~~~~~~~~~-~~~~~~~L~~L~  169 (330)
                      +|++|++++|.++.+|.+..+++|+   +|++++| .+..++.. ...+++|+ .|++++|.+..+. .....++|+.|+
T Consensus       106 ~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~  185 (239)
T 2xwt_C          106 LLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVY  185 (239)
T ss_dssp             TCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEE
T ss_pred             CCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEE
Confidence            9999999999999999888888888   9999999 88887764 33478888 9999888877642 222226778888


Q ss_pred             cCCcc-cccc--ccccCC-CCCcEEECcCCCccccccCCCCcccEEECCCC
Q 020161          170 FGSNR-LRVM--ENLQNL-TNLQELWLGRNRIKVVNLCGLKCIKKISLQSN  216 (330)
Q Consensus       170 l~~~~-~~~~--~~l~~~-~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~  216 (330)
                      +++|. ++.+  ..+..+ ++|+.|++++|.+...+...+++++.|.+.++
T Consensus       186 L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~  236 (239)
T 2xwt_C          186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT  236 (239)
T ss_dssp             CTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred             cCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence            88774 6532  335566 67777777777666655445666666666543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=5.9e-18  Score=141.08  Aligned_cols=170  Identities=24%  Similarity=0.336  Sum_probs=128.2

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      .+.++++++++.+..+|. ..++++++|++++|.+..++. .+.++++|++|++++|.+.+..   ...+..+++|++|+
T Consensus        14 ~~~~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~   89 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS---AGVFDDLTELGTLG   89 (251)
T ss_dssp             GGGTEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC---TTTTTTCTTCCEEE
T ss_pred             CCCeEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC---HhHhccCCcCCEEE
Confidence            456789999999999886 566899999999999998766 5889999999999999998863   33466789999999


Q ss_pred             ccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccc-cccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccccc
Q 020161          103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRV  177 (330)
Q Consensus       103 l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~  177 (330)
                      +++|.++.++.  +..+++|++|++++|.+..++... ..+++|+.|++++|.+..+.  .+..+++|++|++++|.++.
T Consensus        90 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  169 (251)
T 3m19_A           90 LANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS  169 (251)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCc
Confidence            99999998774  678899999999999888776543 33677777777777766642  35666666666666666643


Q ss_pred             c--ccccCCCCCcEEECcCCCc
Q 020161          178 M--ENLQNLTNLQELWLGRNRI  197 (330)
Q Consensus       178 ~--~~l~~~~~L~~L~l~~~~i  197 (330)
                      .  ..+..+++|+.|++++|.+
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N~~  191 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGNQF  191 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSCCB
T ss_pred             cCHHHHhCCCCCCEEEeeCCce
Confidence            2  2345555566666655554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.79  E-value=5.7e-19  Score=153.67  Aligned_cols=214  Identities=15%  Similarity=0.172  Sum_probs=129.7

Q ss_pred             CCCcEEEccCCcCcCCC-CCCCCCcccEEEccCCCCcC--ccccccccCCCcEEEccCCCCCC--cccccCCCCccEEEc
Q 020161           96 AGLEELILRDNKLMKIP-DVSIFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKNEVPK--MEEIEHFHDLQILEF  170 (330)
Q Consensus        96 ~~L~~L~l~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l  170 (330)
                      +.++.++++++.+...+ .+..+++|++|++++|.+..  ++.....+++|+.|++++|.+.+  +..+..+++|++|++
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L  149 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL  149 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence            34444444444444322 23344455555555554432  22223334555555555555443  234556777777777


Q ss_pred             CCc-ccc---ccccccCCCCCcEEECcCC-Ccccc----ccCCCC-cccEEECCCCc--cccc---cccccccccceEEc
Q 020161          171 GSN-RLR---VMENLQNLTNLQELWLGRN-RIKVV----NLCGLK-CIKKISLQSNR--LTSM---KGFEECIALEELYL  235 (330)
Q Consensus       171 ~~~-~~~---~~~~l~~~~~L~~L~l~~~-~i~~~----~~~~~~-~L~~L~l~~~~--l~~~---~~~~~~~~L~~l~l  235 (330)
                      ++| .++   ....+..+++|++|++++| .+.+.    .+..++ +|++|++++|.  ++..   ..+..+++|+.|++
T Consensus       150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l  229 (336)
T 2ast_B          150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL  229 (336)
T ss_dssp             TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence            777 454   2233566777888888877 66653    355667 88888888873  4322   23457888899999


Q ss_pred             cCCC-CCC--CcCCCCCCCCCEEEcCCCC-CCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161          236 SHNG-ISK--MEGLSTLVNLHVLDVSSNK-LTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN  309 (330)
Q Consensus       236 ~~~~-~~~--~~~~~~~~~L~~L~l~~n~-~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n  309 (330)
                      ++|. +++  ++.+..+++|++|++++|. ++..  ..+..+++|+.|++++| +++  ..+..+.   ..++.|++++|
T Consensus       230 ~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~---~~l~~L~l~~n  303 (336)
T 2ast_B          230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLK---EALPHLQINCS  303 (336)
T ss_dssp             TTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHH---HHSTTSEESCC
T ss_pred             CCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHH---hhCcceEEecc
Confidence            8888 543  4567778899999999985 4333  35778899999999998 553  2223332   23556668888


Q ss_pred             Cccccc
Q 020161          310 PCKIFK  315 (330)
Q Consensus       310 ~~~~~~  315 (330)
                      .+++..
T Consensus       304 ~l~~~~  309 (336)
T 2ast_B          304 HFTTIA  309 (336)
T ss_dssp             CSCCTT
T ss_pred             cCcccc
Confidence            877654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.79  E-value=3.2e-20  Score=164.75  Aligned_cols=221  Identities=19%  Similarity=0.257  Sum_probs=141.1

Q ss_pred             CCCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCcCCcc---ccccc----hhhcccCCCcEEEccCCcCcC--
Q 020161           45 PTNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDDA---AIEPI----SRWDALAGLEELILRDNKLMK--  110 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~---~~~~~----~~~~~~~~L~~L~l~~~~l~~--  110 (330)
                      +++|++|++++|.+..     ++..+..+++|++|++++|.+...   .|..+    ..+..+++|++|++++|.++.  
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4567777777776663     222355667777777766543321   11111    112456677777777776664  


Q ss_pred             ---CCC-CCCCCcccEEEccCCCCcCcccc-----cccc---------CCCcEEEccCCCCCC--c----ccccCCCCcc
Q 020161          111 ---IPD-VSIFKKLSVFDVSFNEITSSHGL-----SNVT---------DTLKELYVSKNEVPK--M----EEIEHFHDLQ  166 (330)
Q Consensus       111 ---~~~-~~~~~~L~~L~l~~~~~~~~~~~-----~~~~---------~~L~~L~l~~~~~~~--~----~~~~~~~~L~  166 (330)
                         ++. +..+++|++|++++|.+......     ...+         ++|+.|++++|.+..  +    ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence               222 45566777777777766432111     1112         677777777777753  1    2355677888


Q ss_pred             EEEcCCcccc------ccc-cccCCCCCcEEECcCCCcccc-------ccCCCCcccEEECCCCccccc------ccc--
Q 020161          167 ILEFGSNRLR------VME-NLQNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGF--  224 (330)
Q Consensus       167 ~L~l~~~~~~------~~~-~l~~~~~L~~L~l~~~~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~--  224 (330)
                      +|++++|.++      ... .+..+++|+.|++++|.+.+.       .+..+++|+.|++++|.++..      ..+  
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            8888888775      223 567778888888888887521       466778888888888888765      223  


Q ss_pred             ccccccceEEccCCCCCC-----Cc-CC-CCCCCCCEEEcCCCCCCCc
Q 020161          225 EECIALEELYLSHNGISK-----ME-GL-STLVNLHVLDVSSNKLTLV  265 (330)
Q Consensus       225 ~~~~~L~~l~l~~~~~~~-----~~-~~-~~~~~L~~L~l~~n~~~~~  265 (330)
                      ..+++|+.|++++|.+++     ++ .+ ..+++|+.|++++|++++.
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~  318 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE  318 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence            237888999999988887     43 23 4468899999999988866

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.79  E-value=9.7e-20  Score=152.85  Aligned_cols=170  Identities=19%  Similarity=0.312  Sum_probs=138.7

Q ss_pred             CCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCC
Q 020161          116 IFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN  195 (330)
Q Consensus       116 ~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~  195 (330)
                      .+.++..+++.++.+..+.. ...+++|+.|++++|.+..++.+..+++|+.|++++|.++....+..+++|++|++++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~-~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEEC-HHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCcccccc-hhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            45667777888888877663 34478899999999988887778888899999999988876655888888999999998


Q ss_pred             Ccccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCC
Q 020161          196 RIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRL  274 (330)
Q Consensus       196 ~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L  274 (330)
                      .+.+. .+.. ++|+.|++++|.+++.+.+..+++|+.|++++|.+++++.+..+++|+.|++++|++++...+..+++|
T Consensus        96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L  174 (263)
T 1xeu_A           96 RLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKV  174 (263)
T ss_dssp             CCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred             ccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence            88776 3333 788888888888888877888888888888888888888788888888888888888888777888888


Q ss_pred             CeEeCCCCCCCch
Q 020161          275 EDLWLNDNQIESL  287 (330)
Q Consensus       275 ~~L~l~~n~l~~~  287 (330)
                      +.|++++|+++..
T Consensus       175 ~~L~l~~N~~~~~  187 (263)
T 1xeu_A          175 NWIDLTGQKCVNE  187 (263)
T ss_dssp             CEEEEEEEEEECC
T ss_pred             CEEeCCCCcccCC
Confidence            8888888887754

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.79  E-value=2.5e-18  Score=160.12  Aligned_cols=169  Identities=25%  Similarity=0.391  Sum_probs=77.3

Q ss_pred             CCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEE
Q 020161           45 PTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFD  124 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~  124 (330)
                      +++|+.|++++|.+..++. +..+++|+.|++++|.+.+..+     +..+++|+.|++++|.+..++.+..+++|++|+
T Consensus        42 L~~L~~L~l~~n~i~~l~~-l~~l~~L~~L~Ls~N~l~~~~~-----l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~  115 (605)
T 1m9s_A           42 LNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-----LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS  115 (605)
T ss_dssp             HTTCCCCBCTTCCCCCCTT-GGGCTTCCEEECTTSCCCCCGG-----GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEE
T ss_pred             CCCCCEEECcCCCCCCChH-HccCCCCCEEEeeCCCCCCChh-----hccCCCCCEEECcCCCCCCChhhccCCCCCEEE
Confidence            3444444444444444432 4444444444444444444211     334444444444444444444444444444454


Q ss_pred             ccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccC
Q 020161          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLC  203 (330)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~  203 (330)
                      +++|.+..++. ...+++|+.|++++|.+..+..+..+++|+.|++++|.+.....+..+++|+.|++++|.+.+. .+.
T Consensus       116 Ls~N~l~~l~~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~~l~  194 (605)
T 1m9s_A          116 LEHNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA  194 (605)
T ss_dssp             CTTSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGGGT
T ss_pred             ecCCCCCCCcc-ccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCChHHc
Confidence            44444444322 2223444455554444444444444445555555544444332344444555555555444443 344


Q ss_pred             CCCcccEEECCCCcccc
Q 020161          204 GLKCIKKISLQSNRLTS  220 (330)
Q Consensus       204 ~~~~L~~L~l~~~~l~~  220 (330)
                      .+++|+.|++++|.++.
T Consensus       195 ~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          195 GLKNLDVLELFSQECLN  211 (605)
T ss_dssp             TCTTCSEEECCSEEEEC
T ss_pred             cCCCCCEEEccCCcCcC
Confidence            44445555555444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=4.1e-18  Score=149.09  Aligned_cols=232  Identities=20%  Similarity=0.249  Sum_probs=172.2

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcE-EE
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEE-LI  102 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~-L~  102 (330)
                      +.+++++++++++.+|. ..++++++|++++|+|+.++.. |.++++|++|++++|.+.+..+  ...|..++++.+ +.
T Consensus        10 ~~~~v~C~~~~Lt~iP~-~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~--~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           10 SNRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIE--ADVFSNLPKLHEIRI   86 (350)
T ss_dssp             ETTEEEEESTTCCSCCT-TCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEEC--TTSBCSCTTCCEEEE
T ss_pred             eCCEEEecCCCCCccCc-CcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccC--hhHhhcchhhhhhhc
Confidence            34678999999999986 5678999999999999999874 8999999999999999876432  345677888776 45


Q ss_pred             ccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCC-CCCCc--ccccCC-CCccEEEcCCccc
Q 020161          103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKN-EVPKM--EEIEHF-HDLQILEFGSNRL  175 (330)
Q Consensus       103 l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~-~~~~~--~~~~~~-~~L~~L~l~~~~~  175 (330)
                      +.+|.++.+++  +..+++|++|++++|.+..++..... ..++..+++.++ .+..+  ..+..+ ..++.|++++|.+
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            66788988764  78899999999999999887765443 566777887654 44443  234444 3578888888888


Q ss_pred             ccc-ccccCCCCCcEEECcC-CCcccc---ccCCCCcccEEECCCCccccccccccccccceEEccC-CCCCCCcCCCCC
Q 020161          176 RVM-ENLQNLTNLQELWLGR-NRIKVV---NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSH-NGISKMEGLSTL  249 (330)
Q Consensus       176 ~~~-~~l~~~~~L~~L~l~~-~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~-~~~~~~~~~~~~  249 (330)
                      +.+ .......+++++++.+ |.+...   .|..+++|+.|++++|+++..+. ..+..|+.|.+.+ +.+..++.+..+
T Consensus       167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~l  245 (350)
T 4ay9_X          167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEKL  245 (350)
T ss_dssp             CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCCTTTC
T ss_pred             cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCCchhC
Confidence            643 4444566788888864 556555   46777888888888888887754 2355666666544 346667778888


Q ss_pred             CCCCEEEcCCC
Q 020161          250 VNLHVLDVSSN  260 (330)
Q Consensus       250 ~~L~~L~l~~n  260 (330)
                      ++|+.++++++
T Consensus       246 ~~L~~l~l~~~  256 (350)
T 4ay9_X          246 VALMEASLTYP  256 (350)
T ss_dssp             CSCCEEECSCH
T ss_pred             cChhhCcCCCC
Confidence            88888888653

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=3.4e-20  Score=173.62  Aligned_cols=302  Identities=17%  Similarity=0.160  Sum_probs=162.7

Q ss_pred             ccccCCCcEEeccCcccccCC--CCC-CCCCcCEEecCCC-CCCC--hhhhhhcCCCCCEEeCCCCcCCccccccchhh-
Q 020161           20 VEIDLSNTVLDLTSFQLHDLD--SVE-FPTNLTELDLTAN-RLTS--LDSRISHLSNLKKLSLRQNLIDDAAIEPISRW-   92 (330)
Q Consensus        20 ~~~~~~l~~l~l~~~~l~~~~--~~~-~~~~L~~L~l~~~-~i~~--l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~-   92 (330)
                      ....+++++|+++++.+.+..  .+. .+++|++|++++| .+..  ++..+.++++|++|++++|.+++..+..+..+ 
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            345667888888887765432  121 3578888888888 5553  44545678888888888888776544444433 


Q ss_pred             cccCCCcEEEccCCcCcCCC-----C-CCCCCcccEEEccCCC-CcCcc-------------------------------
Q 020161           93 DALAGLEELILRDNKLMKIP-----D-VSIFKKLSVFDVSFNE-ITSSH-------------------------------  134 (330)
Q Consensus        93 ~~~~~L~~L~l~~~~l~~~~-----~-~~~~~~L~~L~l~~~~-~~~~~-------------------------------  134 (330)
                      ..+++|++|++++|. ..++     . +..+++|++|++++|. +..++                               
T Consensus       181 ~~~~~L~~L~l~~~~-~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~  259 (594)
T 2p1m_B          181 DTYTSLVSLNISCLA-SEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV  259 (594)
T ss_dssp             TTCCCCCEEECTTCC-SCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred             hcCCcCcEEEecccC-CcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence            356778888887775 2121     1 2335666677666651 11100                               


Q ss_pred             -----------------------ccccccCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCcccc--cccc-ccCCC
Q 020161          135 -----------------------GLSNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLR--VMEN-LQNLT  185 (330)
Q Consensus       135 -----------------------~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~--~~~~-l~~~~  185 (330)
                                             .....+++|+.|++++|.+...   ..+..+++|+.|+++++ +.  .+.. ...++
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~  338 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCK  338 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCT
T ss_pred             HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCC
Confidence                                   0011246667777766664431   11345566666666655 21  1111 12344


Q ss_pred             CCcEEECc---------CCCccccc----cCCCCcccEEECCCCcccccc--c---------------------------
Q 020161          186 NLQELWLG---------RNRIKVVN----LCGLKCIKKISLQSNRLTSMK--G---------------------------  223 (330)
Q Consensus       186 ~L~~L~l~---------~~~i~~~~----~~~~~~L~~L~l~~~~l~~~~--~---------------------------  223 (330)
                      +|++|++.         .+.+++..    ...+++|+.|.+.++.++...  .                           
T Consensus       339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~  418 (594)
T 2p1m_B          339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLE  418 (594)
T ss_dssp             TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCC
T ss_pred             CCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCC
Confidence            55555552         12222210    011333444433333333220  1                           


Q ss_pred             ---------cccccccceEEccCCCCCCC--cCCC-CCCCCCEEEcCCCCCCCc--ccc-ccCCCCCeEeCCCCCCCchH
Q 020161          224 ---------FEECIALEELYLSHNGISKM--EGLS-TLVNLHVLDVSSNKLTLV--DDI-QNLSRLEDLWLNDNQIESLE  288 (330)
Q Consensus       224 ---------~~~~~~L~~l~l~~~~~~~~--~~~~-~~~~L~~L~l~~n~~~~~--~~~-~~~~~L~~L~l~~n~l~~~~  288 (330)
                               +..+++|+.|++++ .+++.  +.+. .+++|+.|++++|.+++.  ..+ ..+++|++|++++|++++  
T Consensus       419 ~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~--  495 (594)
T 2p1m_B          419 PLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD--  495 (594)
T ss_dssp             CTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH--
T ss_pred             chhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH--
Confidence                     22344444444433 22221  1122 256788888888877654  222 567888888888888853  


Q ss_pred             HHHHHHhccccccchhhccCCCccccccccccccCCCCC
Q 020161          289 SIVEAVAGSRETLTTIYLENNPCKIFKLFCYPQTNFPKY  327 (330)
Q Consensus       289 ~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~~~~~p~~  327 (330)
                      ..+......+++|+.|++++|+.+... ......++|++
T Consensus       496 ~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~~lp~l  533 (594)
T 2p1m_B          496 KALLANASKLETMRSLWMSSCSVSFGA-CKLLGQKMPKL  533 (594)
T ss_dssp             HHHHHTGGGGGGSSEEEEESSCCBHHH-HHHHHHHCTTE
T ss_pred             HHHHHHHHhCCCCCEEeeeCCCCCHHH-HHHHHHhCCCC
Confidence            233445667888888888888874322 22233445655

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.78  E-value=5.4e-21  Score=179.08  Aligned_cols=289  Identities=16%  Similarity=0.201  Sum_probs=169.1

Q ss_pred             ccccccCCCcEEeccCcccccCC-----C-CCCCCCcCEEecCCCC--CC--ChhhhhhcCCCCCEEeCCCCcC-Cc---
Q 020161           18 QAVEIDLSNTVLDLTSFQLHDLD-----S-VEFPTNLTELDLTANR--LT--SLDSRISHLSNLKKLSLRQNLI-DD---   83 (330)
Q Consensus        18 ~~~~~~~~l~~l~l~~~~l~~~~-----~-~~~~~~L~~L~l~~~~--i~--~l~~~~~~l~~L~~L~l~~~~~-~~---   83 (330)
                      ......+++++|+++++.+.+..     . ...+++|++|++++|.  +.  .+...+.++++|++|++++|.. .+   
T Consensus       150 ~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~  229 (594)
T 2p1m_B          150 AIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLAT  229 (594)
T ss_dssp             HHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHH
T ss_pred             HHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHH
Confidence            34445678888888887765532     1 1245678888888775  22  2222345577777777777621 11   


Q ss_pred             ----------------------------------------------cccccchh-hcccCCCcEEEccCCcCcC--CCC-
Q 020161           84 ----------------------------------------------AAIEPISR-WDALAGLEELILRDNKLMK--IPD-  113 (330)
Q Consensus        84 ----------------------------------------------~~~~~~~~-~~~~~~L~~L~l~~~~l~~--~~~-  113 (330)
                                                                    .....+.. +..+++|++|++++|.++.  +.. 
T Consensus       230 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~  309 (594)
T 2p1m_B          230 LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL  309 (594)
T ss_dssp             HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHH
T ss_pred             HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHH
Confidence                                                          00000111 1134555555555555432  111 


Q ss_pred             CCCCCcccEEEccCCCCcC--ccccccccCCCcEEEccCC---------CCCC--cccc-cCCCCccEEEcCCccccc--
Q 020161          114 VSIFKKLSVFDVSFNEITS--SHGLSNVTDTLKELYVSKN---------EVPK--MEEI-EHFHDLQILEFGSNRLRV--  177 (330)
Q Consensus       114 ~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~L~~L~l~~~---------~~~~--~~~~-~~~~~L~~L~l~~~~~~~--  177 (330)
                      +..+++|++|++.+| +..  +......+++|+.|++.++         .++.  +..+ ..+++|+.|.+..+.++.  
T Consensus       310 ~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~  388 (594)
T 2p1m_B          310 LCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAA  388 (594)
T ss_dssp             HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHH
T ss_pred             HhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHH
Confidence            234555666655555 211  1111122566666666331         2221  1111 235667777666555542  


Q ss_pred             cccc-cCCCCCcEEECc--C----CCcccc--------ccCCCCcccEEECCCCccccc--cccc-cccccceEEccCCC
Q 020161          178 MENL-QNLTNLQELWLG--R----NRIKVV--------NLCGLKCIKKISLQSNRLTSM--KGFE-ECIALEELYLSHNG  239 (330)
Q Consensus       178 ~~~l-~~~~~L~~L~l~--~----~~i~~~--------~~~~~~~L~~L~l~~~~l~~~--~~~~-~~~~L~~l~l~~~~  239 (330)
                      +..+ ..+++|+.|+++  +    +.++..        .+..+++|+.|++++ .++..  ..+. .+++|+.|++++|.
T Consensus       389 ~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~  467 (594)
T 2p1m_B          389 LITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG  467 (594)
T ss_dssp             HHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred             HHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence            2223 257888999888  3    445421        145678899999976 55443  2233 37899999999999


Q ss_pred             CCCC--cCC-CCCCCCCEEEcCCCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161          240 ISKM--EGL-STLVNLHVLDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       240 ~~~~--~~~-~~~~~L~~L~l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~  310 (330)
                      +++.  ..+ ..+++|++|++++|.+++.   .....+++|++|++++|+++.  ..+..+...+|+|+...+..+.
T Consensus       468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF--GACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH--HHHHHHHHHCTTEEEEEECSSS
T ss_pred             CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH--HHHHHHHHhCCCCEEEEecCCC
Confidence            8753  333 5689999999999999654   244568999999999999853  3445555778999877777664

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.78  E-value=2.8e-19  Score=155.61  Aligned_cols=234  Identities=15%  Similarity=0.151  Sum_probs=158.1

Q ss_pred             CCcCEEecCCCCCCChhhhhhcC--CCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcC--CCC-CCCCCcc
Q 020161           46 TNLTELDLTANRLTSLDSRISHL--SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK--IPD-VSIFKKL  120 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~-~~~~~~L  120 (330)
                      ..++.++++++.+.  +..+..+  ++++.++++++.+.+..+    .+..+++|++|++++|.++.  ++. +..+++|
T Consensus        47 ~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~----~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L  120 (336)
T 2ast_B           47 SLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLA----EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKL  120 (336)
T ss_dssp             TTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCC----SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCC
T ss_pred             hhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccch----hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCC
Confidence            34677777777666  3445555  778888888877766432    23456778888888777653  443 5667788


Q ss_pred             cEEEccCCCCcCcc-ccccccCCCcEEEccCC-CCCC--c-ccccCCCCccEEEcCCc-ccc---ccccccCCC-CCcEE
Q 020161          121 SVFDVSFNEITSSH-GLSNVTDTLKELYVSKN-EVPK--M-EEIEHFHDLQILEFGSN-RLR---VMENLQNLT-NLQEL  190 (330)
Q Consensus       121 ~~L~l~~~~~~~~~-~~~~~~~~L~~L~l~~~-~~~~--~-~~~~~~~~L~~L~l~~~-~~~---~~~~l~~~~-~L~~L  190 (330)
                      ++|++++|.+.... .....+++|+.|++++| .+.+  + ..+..+++|++|++++| .++   ....+..++ +|++|
T Consensus       121 ~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L  200 (336)
T 2ast_B          121 QNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL  200 (336)
T ss_dssp             SEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEE
T ss_pred             CEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEE
Confidence            88888887765322 22233677888888887 4553  2 23567788888888888 665   234466778 88888


Q ss_pred             ECcCC--Ccccc----ccCCCCcccEEECCCCc-cccc--cccccccccceEEccCCC-CCC--CcCCCCCCCCCEEEcC
Q 020161          191 WLGRN--RIKVV----NLCGLKCIKKISLQSNR-LTSM--KGFEECIALEELYLSHNG-ISK--MEGLSTLVNLHVLDVS  258 (330)
Q Consensus       191 ~l~~~--~i~~~----~~~~~~~L~~L~l~~~~-l~~~--~~~~~~~~L~~l~l~~~~-~~~--~~~~~~~~~L~~L~l~  258 (330)
                      ++++|  .+.+.    .+..+++|+.|++++|. ++..  +.+..+++|+.|++++|. +.+  +..+..+++|+.|+++
T Consensus       201 ~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~  280 (336)
T 2ast_B          201 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF  280 (336)
T ss_dssp             ECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECT
T ss_pred             EeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEecc
Confidence            88888  44422    44567889999998887 5543  456778999999999985 332  2357778999999999


Q ss_pred             CCCCCCccccccC-CCCCeEeCCCCCCCch
Q 020161          259 SNKLTLVDDIQNL-SRLEDLWLNDNQIESL  287 (330)
Q Consensus       259 ~n~~~~~~~~~~~-~~L~~L~l~~n~l~~~  287 (330)
                      +| ++.. .+..+ ..+..|++++|+++.+
T Consensus       281 ~~-i~~~-~~~~l~~~l~~L~l~~n~l~~~  308 (336)
T 2ast_B          281 GI-VPDG-TLQLLKEALPHLQINCSHFTTI  308 (336)
T ss_dssp             TS-SCTT-CHHHHHHHSTTSEESCCCSCCT
T ss_pred             Cc-cCHH-HHHHHHhhCcceEEecccCccc
Confidence            99 5443 12222 2356667889998864

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=2.3e-17  Score=152.10  Aligned_cols=176  Identities=20%  Similarity=0.316  Sum_probs=113.2

Q ss_pred             CCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccc
Q 020161           97 GLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRL  175 (330)
Q Consensus        97 ~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  175 (330)
                      +++.|++++|.++++|. +  .++|++|++++|.+..++   ..+++|+.|++++|.+.+++.+..  +|++|++++|.+
T Consensus        60 ~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls~N~l  132 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPELPA--SLKHLDVDNNQL  132 (571)
T ss_dssp             TCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECCSSCC
T ss_pred             CccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcchhhc--CCCEEECCCCcC
Confidence            45555555555554443 2  244555555555554433   224455555555555544333222  566666666665


Q ss_pred             cccccccCCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCC---
Q 020161          176 RVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNL---  252 (330)
Q Consensus       176 ~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L---  252 (330)
                      +.++.  .+++|+.|++++|.+...+. .+++|+.|++++|.+++.+.+.  ++|+.|++++|.++.++.+..  +|   
T Consensus       133 ~~lp~--~l~~L~~L~Ls~N~l~~lp~-~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~--~L~~~  205 (571)
T 3cvr_A          133 TMLPE--LPALLEYINADNNQLTMLPE-LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV--RNHHS  205 (571)
T ss_dssp             SCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC--------
T ss_pred             CCCCC--cCccccEEeCCCCccCcCCC-cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH--hhhcc
Confidence            54333  45667777777777666533 5667888888888888776643  888999999998888776333  67   


Q ss_pred             ----CEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCc
Q 020161          253 ----HVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       253 ----~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~  286 (330)
                          +.|++++|+++.+ ..+..+++|+.|++++|+++.
T Consensus       206 ~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          206 EETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             --CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             cccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence                9999999999988 447779999999999999984

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.76  E-value=3.5e-19  Score=149.46  Aligned_cols=170  Identities=23%  Similarity=0.311  Sum_probs=150.6

Q ss_pred             ccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc
Q 020161           94 ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN  173 (330)
Q Consensus        94 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  173 (330)
                      .+..+..++++++.++.++.+..+++|++|++++|.+..++ ....+++|+.|++++|.+.++..+..+++|++|++++|
T Consensus        17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRN   95 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSS
T ss_pred             HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCC
Confidence            35567778888899888877788999999999999998876 34457999999999999998766999999999999999


Q ss_pred             cccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCC
Q 020161          174 RLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNL  252 (330)
Q Consensus       174 ~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L  252 (330)
                      .++..+.+.. ++|++|++++|.+.+. .+..+++|+.|++++|.+++.+.+..+++|+.|++++|.+++++.+..+++|
T Consensus        96 ~l~~l~~~~~-~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L  174 (263)
T 1xeu_A           96 RLKNLNGIPS-ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTGGLTRLKKV  174 (263)
T ss_dssp             CCSCCTTCCC-SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBCGGGGGCTTCCEEECTTSCCCBCTTSTTCCCC
T ss_pred             ccCCcCcccc-CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCChHHccCCCCCEEECCCCcCcchHHhccCCCC
Confidence            9987666665 8999999999998887 6888999999999999999998888999999999999999999889999999


Q ss_pred             CEEEcCCCCCCCc
Q 020161          253 HVLDVSSNKLTLV  265 (330)
Q Consensus       253 ~~L~l~~n~~~~~  265 (330)
                      +.|++++|+++..
T Consensus       175 ~~L~l~~N~~~~~  187 (263)
T 1xeu_A          175 NWIDLTGQKCVNE  187 (263)
T ss_dssp             CEEEEEEEEEECC
T ss_pred             CEEeCCCCcccCC
Confidence            9999999998766

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.75  E-value=6.4e-17  Score=134.78  Aligned_cols=169  Identities=23%  Similarity=0.328  Sum_probs=118.6

Q ss_pred             CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEE
Q 020161           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVF  123 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L  123 (330)
                      ...++++++++.++.+|..+.  ++++.|++++|.+....+   ..+..+++|++|++++|.++.+++  +..+++|++|
T Consensus        14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSD---ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCT---TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCH---hHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence            467889999999999987654  689999999999988643   356678999999999999998765  7788999999


Q ss_pred             EccCCCCcCccccc-cccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccccccc--cccCCCCCcEEECcCCCcc
Q 020161          124 DVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRVME--NLQNLTNLQELWLGRNRIK  198 (330)
Q Consensus       124 ~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~--~l~~~~~L~~L~l~~~~i~  198 (330)
                      ++++|.+..++... ..+++|+.|++++|.+..+.  .+..+++|++|++++|.++.+.  .+..+++|++|++++|.+.
T Consensus        89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            99999888766433 33677777777777766642  2456666666666666664332  3555556666666666555


Q ss_pred             cc---ccCCCCcccEEECCCCccc
Q 020161          199 VV---NLCGLKCIKKISLQSNRLT  219 (330)
Q Consensus       199 ~~---~~~~~~~L~~L~l~~~~l~  219 (330)
                      ..   .+..+++|+.|++++|.++
T Consensus       169 ~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          169 SVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             ccCHHHHhCCCCCCEEEeeCCcee
Confidence            44   2344455555555555443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.2e-17  Score=134.03  Aligned_cols=146  Identities=19%  Similarity=0.299  Sum_probs=73.9

Q ss_pred             cCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCC
Q 020161          140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSN  216 (330)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~  216 (330)
                      +++++.|++++|.+..+..+..+++|++|++++|.++.+..+..+++|++|++++|.+.+.   .+..+++|++|++++|
T Consensus        43 l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n  122 (197)
T 4ezg_A           43 MNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS  122 (197)
T ss_dssp             HHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS
T ss_pred             cCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC
Confidence            3444555555554444334445555555555555554444555555555555555555432   3444455555555555


Q ss_pred             ccccc--cccccccccceEEccCCC-CCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCC
Q 020161          217 RLTSM--KGFEECIALEELYLSHNG-ISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       217 ~l~~~--~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~  285 (330)
                      .+++.  ..+..+++|+.|++++|. ++.++.+..+++|++|++++|++++++.+..+++|+.|++++|++.
T Consensus       123 ~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             BCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTGGGCSSCCEEEECBC---
T ss_pred             ccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHhccCCCCCEEEeeCcccC
Confidence            55442  234445555555555554 5555445555555555555555555544555555555555555544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.74  E-value=8e-17  Score=148.55  Aligned_cols=175  Identities=25%  Similarity=0.325  Sum_probs=104.7

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  104 (330)
                      ++++|+++++.+.++|. ..+++|++|++++|.++.+|   ..+++|++|++++|.+++. +.    +.  .+|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~i-p~----l~--~~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPD-NLPPQITVLEITQNALISLP---ELPASLEYLDACDNRLSTL-PE----LP--ASLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCC-CC----CC--TTCCEEECC
T ss_pred             CccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCc-ch----hh--cCCCEEECC
Confidence            67777777777777665 23467777777777777776   3467777777777777663 11    22  277777777


Q ss_pred             CCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCC
Q 020161          105 DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL  184 (330)
Q Consensus       105 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~  184 (330)
                      +|.++.+|.  .+++|++|++++|.+..++.   .+++|+.|++++|.+..++.+.  ++|+.|++++|.++.++.+.. 
T Consensus       129 ~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~l~--~~L~~L~Ls~N~L~~lp~~~~-  200 (571)
T 3cvr_A          129 NNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPELP--ESLEALDVSTNLLESLPAVPV-  200 (571)
T ss_dssp             SSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCCCCC--
T ss_pred             CCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcchhh--CCCCEEECcCCCCCchhhHHH-
Confidence            777777766  56777777777777766554   3566777777777666644332  566666666666653322222 


Q ss_pred             CCC-------cEEECcCCCcccc--ccCCCCcccEEECCCCccc
Q 020161          185 TNL-------QELWLGRNRIKVV--NLCGLKCIKKISLQSNRLT  219 (330)
Q Consensus       185 ~~L-------~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~  219 (330)
                       +|       +.|++++|.+...  .+..+++|+.|++++|.++
T Consensus       201 -~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          201 -RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLS  243 (571)
T ss_dssp             --------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCC
T ss_pred             -hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCC
Confidence             34       4555555444433  2333444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.72  E-value=3e-16  Score=137.19  Aligned_cols=228  Identities=17%  Similarity=0.209  Sum_probs=174.2

Q ss_pred             CEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcC-CCC--CCCCCcccE-EE
Q 020161           49 TELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD--VSIFKKLSV-FD  124 (330)
Q Consensus        49 ~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~--~~~~~~L~~-L~  124 (330)
                      ++++.++++++.+|..+  .+++++|++++|.++..   +...|..+++|++|++++|.+.+ ++.  +..++++.+ +.
T Consensus        12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i---~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVI---QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEE---CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCc---CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            67889999999999865  46899999999999876   33457789999999999999754 553  667777765 56


Q ss_pred             ccCCCCcCccccc-cccCCCcEEEccCCCCCCccc--ccCCCCccEEEcCC-cccccc--ccccCC-CCCcEEECcCCCc
Q 020161          125 VSFNEITSSHGLS-NVTDTLKELYVSKNEVPKMEE--IEHFHDLQILEFGS-NRLRVM--ENLQNL-TNLQELWLGRNRI  197 (330)
Q Consensus       125 l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~-~~~~~~--~~l~~~-~~L~~L~l~~~~i  197 (330)
                      +..|++..+++.. ..+++|+.|++++|.+.....  +....++..+++.+ +.+..+  ..+..+ ..++.|++++|.+
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            6778888886544 448999999999999887543  34455677788755 455432  234444 3688999999999


Q ss_pred             ccc--ccCCCCcccEEECCC-Ccccccc--ccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCC-CCCCccccccC
Q 020161          198 KVV--NLCGLKCIKKISLQS-NRLTSMK--GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSN-KLTLVDDIQNL  271 (330)
Q Consensus       198 ~~~--~~~~~~~L~~L~l~~-~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~  271 (330)
                      ..+  ......+++.+.+.+ |.++.++  .+..+++|+.|++++|.++.++. ..+.+|+.|.+.++ .++.++.+..+
T Consensus       167 ~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~-~~~~~L~~L~~l~~~~l~~lP~l~~l  245 (350)
T 4ay9_X          167 QEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS-YGLENLKKLRARSTYNLKKLPTLEKL  245 (350)
T ss_dssp             CEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS-SSCTTCCEEECTTCTTCCCCCCTTTC
T ss_pred             cCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh-hhhccchHhhhccCCCcCcCCCchhC
Confidence            877  333456799999874 6787774  47889999999999999999864 34667888877665 56777888899


Q ss_pred             CCCCeEeCCCC
Q 020161          272 SRLEDLWLNDN  282 (330)
Q Consensus       272 ~~L~~L~l~~n  282 (330)
                      ++|+.+++.++
T Consensus       246 ~~L~~l~l~~~  256 (350)
T 4ay9_X          246 VALMEASLTYP  256 (350)
T ss_dssp             CSCCEEECSCH
T ss_pred             cChhhCcCCCC
Confidence            99999999764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=9.7e-17  Score=128.64  Aligned_cols=149  Identities=16%  Similarity=0.232  Sum_probs=98.1

Q ss_pred             cccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCC
Q 020161           93 DALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGS  172 (330)
Q Consensus        93 ~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~  172 (330)
                      ..+++|++|++++|.++.++.+..+++|++|++++|.+...                       ..+..+++|++|++++
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~-----------------------~~l~~l~~L~~L~l~~   97 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-----------------------NPISGLSNLERLRIMG   97 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC-----------------------GGGTTCTTCCEEEEEC
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc-----------------------hhhhcCCCCCEEEeEC
Confidence            34677888888888777777666677777777777654433                       3344445555555555


Q ss_pred             ccccc--cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCc-cccccccccccccceEEccCCCCCCCcCC
Q 020161          173 NRLRV--MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNR-LTSMKGFEECIALEELYLSHNGISKMEGL  246 (330)
Q Consensus       173 ~~~~~--~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~-l~~~~~~~~~~~L~~l~l~~~~~~~~~~~  246 (330)
                      |.++.  +..+..+++|++|++++|.+.+.   .+..+++|+.|++++|. ++..+.+..+++|+.|++++|.+++++.+
T Consensus        98 n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~~l  177 (197)
T 4ezg_A           98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGI  177 (197)
T ss_dssp             TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCTTG
T ss_pred             CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChHHh
Confidence            55542  34455566666666666666542   45566677777777775 66666677778888888888888887777


Q ss_pred             CCCCCCCEEEcCCCCCCC
Q 020161          247 STLVNLHVLDVSSNKLTL  264 (330)
Q Consensus       247 ~~~~~L~~L~l~~n~~~~  264 (330)
                      ..+++|+.|++++|++++
T Consensus       178 ~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          178 EDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGCSSCCEEEECBC----
T ss_pred             ccCCCCCEEEeeCcccCC
Confidence            788888888888887754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=9.4e-16  Score=125.82  Aligned_cols=150  Identities=23%  Similarity=0.273  Sum_probs=123.8

Q ss_pred             cCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChh-hhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161           23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLD-SRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  101 (330)
                      ..+.+.++++++.+..+|. ..+++|++|++++|.+..++ ..|.++++|++|++++|.+....   ...|..+++|++|
T Consensus        18 ~Cs~~~v~c~~~~l~~ip~-~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~---~~~~~~l~~L~~L   93 (229)
T 3e6j_A           18 SCSGTTVDCRSKRHASVPA-GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP---VGVFDSLTQLTVL   93 (229)
T ss_dssp             EEETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEE
T ss_pred             EEeCCEeEccCCCcCccCC-CCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC---hhhcccCCCcCEE
Confidence            4457889999999999986 56799999999999999874 45889999999999999997752   3346779999999


Q ss_pred             EccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCcccc
Q 020161          102 ILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLR  176 (330)
Q Consensus       102 ~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~  176 (330)
                      ++++|.++.++.  +..+++|++|++++|.+..++.....+++|+.|++++|.+..+.  .+..+++|+.|++++|.+.
T Consensus        94 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A           94 DLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             ECCCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            999999998876  67899999999999999888766666788888888888877743  4667777788888777653

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=4.8e-16  Score=125.66  Aligned_cols=163  Identities=21%  Similarity=0.265  Sum_probs=115.2

Q ss_pred             CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (330)
Q Consensus        26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  104 (330)
                      -+.++++++.+..+|. ..++++++|++++|.++.++.. +..+++|++|++++|.+....   ...|..+++|++|+++
T Consensus         9 ~~~v~c~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            9 GTTVECYSQGRTSVPT-GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLP---NGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCccCCCC-CCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccC---hhhcCCCCCcCEEECC
Confidence            4677888888888774 5577999999999999987764 778999999999999888652   2345678899999999


Q ss_pred             CCcCcCCCC--CCCCCcccEEEccCCCCcCccccc-cccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccccccc
Q 020161          105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRVME  179 (330)
Q Consensus       105 ~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~  179 (330)
                      +|.++.++.  +..+++|++|++++|.+..++... ..+++|+.|++++|.+..+.  .+..+++|+.|++++|.+.   
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~---  161 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD---  161 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC---
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee---
Confidence            999888775  677888999999888887766532 33566777777776665532  2455566666666665432   


Q ss_pred             cccCCCCCcEEECcCCCc
Q 020161          180 NLQNLTNLQELWLGRNRI  197 (330)
Q Consensus       180 ~l~~~~~L~~L~l~~~~i  197 (330)
                        ..++.|+.|++..|.+
T Consensus       162 --~~~~~l~~L~~~~n~~  177 (208)
T 2o6s_A          162 --CTCPGIRYLSEWINKH  177 (208)
T ss_dssp             --CCTTTTHHHHHHHHHC
T ss_pred             --cCCCCHHHHHHHHHhC
Confidence              2233444444444433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.69  E-value=6.8e-16  Score=125.87  Aligned_cols=146  Identities=20%  Similarity=0.345  Sum_probs=115.3

Q ss_pred             CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc
Q 020161           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR  104 (330)
Q Consensus        26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~  104 (330)
                      .+.++++++.+..+|. ..++++++|++++|.|..++. .|..+++|++|++++|.+....   ...|..+++|++|+++
T Consensus        13 ~~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~---~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA---PDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             TTEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC---TTTTTTCSSCCEEECC
T ss_pred             CCEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC---HHHhhCCcCCCEEECC
Confidence            4688999999999886 556899999999999998876 5889999999999999998863   3456778999999999


Q ss_pred             CCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccc
Q 020161          105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRL  175 (330)
Q Consensus       105 ~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~  175 (330)
                      +|.++.++.  +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+..+.  .+..+++|+.|++++|.+
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           89 GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            999998886  67889999999999998877543 233667777777777766632  355566666666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=1.2e-15  Score=124.32  Aligned_cols=147  Identities=21%  Similarity=0.355  Sum_probs=111.3

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh--hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS--RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      ..++++++++.+..+|. ..++.+++|++++|.++.+++  .|..+++|++|++++|.+....   ...|..+++|++|+
T Consensus        12 ~~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~---~~~~~~l~~L~~L~   87 (220)
T 2v70_A           12 EGTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE---EGAFEGASGVNEIL   87 (220)
T ss_dssp             ETTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEE
T ss_pred             CCCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC---HHHhCCCCCCCEEE
Confidence            34689999999999886 567788999999999998743  3789999999999999988763   33567789999999


Q ss_pred             ccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCccc
Q 020161          103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRL  175 (330)
Q Consensus       103 l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~  175 (330)
                      +++|.++.++.  +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+..+  ..+..+++|+.|++++|.+
T Consensus        88 Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           88 LTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             CCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             CCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            99999988775  77888899999999888876543 23356667777776666653  3455556666666666554

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.65  E-value=1.1e-15  Score=134.25  Aligned_cols=170  Identities=25%  Similarity=0.389  Sum_probs=136.4

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hh-cCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-IS-HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      ..++++++++.+..+|. ..++.++.|++++|.|+.++.. +. .+++|++|++++|.+....   ...|..+++|++|+
T Consensus        19 ~~~~l~c~~~~l~~iP~-~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~---~~~~~~l~~L~~L~   94 (361)
T 2xot_A           19 ASNILSCSKQQLPNVPQ-SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS---SEAFVPVPNLRYLD   94 (361)
T ss_dssp             ETTEEECCSSCCSSCCS-SCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEE
T ss_pred             CCCEEEeCCCCcCccCc-cCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC---hhhccCCCCCCEEE
Confidence            34789999999999886 5678899999999999988775 55 8999999999999998863   33577899999999


Q ss_pred             ccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCCCccc--c---cCCCCccEEEcCCcc
Q 020161          103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVPKMEE--I---EHFHDLQILEFGSNR  174 (330)
Q Consensus       103 l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--~---~~~~~L~~L~l~~~~  174 (330)
                      +++|.++.++.  +..+++|++|++++|.+..+.+. ...+++|+.|++++|.+..+..  +   ..+++|+.|++++|.
T Consensus        95 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           95 LSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            99999998765  78899999999999999887543 3447899999999998887532  3   568889999999998


Q ss_pred             cccc--ccccCCCC--CcEEECcCCCcc
Q 020161          175 LRVM--ENLQNLTN--LQELWLGRNRIK  198 (330)
Q Consensus       175 ~~~~--~~l~~~~~--L~~L~l~~~~i~  198 (330)
                      ++.+  ..+..++.  ++.|++++|.+.
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCcc
Confidence            8643  23555554  477888888664

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.65  E-value=1e-15  Score=124.81  Aligned_cols=142  Identities=20%  Similarity=0.354  Sum_probs=109.8

Q ss_pred             cEEEccCCCCCCcccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcc
Q 020161          144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRL  218 (330)
Q Consensus       144 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l  218 (330)
                      +.+++.++.++.++. .-.++++.|++++|.++.+  ..+..+++|+.|++++|.+...   .+..+++|++|++++|.+
T Consensus        14 ~~v~c~~~~l~~iP~-~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT-NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             TEEECTTSCCSSCCS-SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCC
T ss_pred             CEEEcCCCCcCcCCC-ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcC
Confidence            567777777776432 1126788999998888643  3577788889999988888766   577788888888888888


Q ss_pred             ccccc--cccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCc
Q 020161          219 TSMKG--FEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       219 ~~~~~--~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      +..+.  +..+++|+.|++++|.++++  ..+..+++|+.|++++|+++.+  ..+..+++|+.|++++|++..
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            87743  67788888888888888876  3577888888888888888877  347778888888888888764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.63  E-value=9.5e-15  Score=118.01  Aligned_cols=139  Identities=24%  Similarity=0.421  Sum_probs=75.0

Q ss_pred             CccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccccc--cccccccceEEcc
Q 020161          164 DLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLS  236 (330)
Q Consensus       164 ~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~l~l~  236 (330)
                      ++++|++++|.++..  ..+..+++|++|++++|.+...   .+..+++|++|++++|.++..+.  +..+++|+.|+++
T Consensus        29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  108 (208)
T 2o6s_A           29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN  108 (208)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence            344444444444322  1134444555555555544443   23445556666666665555432  4556666666666


Q ss_pred             CCCCCCCcC--CCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161          237 HNGISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK  312 (330)
Q Consensus       237 ~~~~~~~~~--~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~  312 (330)
                      +|.+++++.  +..+++|++|++++|+++++  ..+..+++|+.|++++|++..          .|++|+.|+++.|.+.
T Consensus       109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----------~~~~l~~L~~~~n~~~  178 (208)
T 2o6s_A          109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----------TCPGIRYLSEWINKHS  178 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC----------CTTTTHHHHHHHHHCT
T ss_pred             CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec----------CCCCHHHHHHHHHhCC
Confidence            666665532  45666666666666666655  235566667777777666542          2355666665555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.62  E-value=6.8e-15  Score=129.13  Aligned_cols=168  Identities=23%  Similarity=0.297  Sum_probs=81.7

Q ss_pred             cEEEccCCCCcCccccccccCCCcEEEccCCCCCCc--cccc-CCCCccEEEcCCcccccc--ccccCCCCCcEEECcCC
Q 020161          121 SVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIE-HFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRN  195 (330)
Q Consensus       121 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~-~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~  195 (330)
                      +.++++++.+..++..  ....++.|++++|.+..+  ..+. .+++|+.|++++|.++.+  ..+..+++|++|++++|
T Consensus        21 ~~l~c~~~~l~~iP~~--~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQLPNVPQS--LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCCSSCCSS--CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCcCccCcc--CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            4667777776665532  234466666666666553  2233 555666666666555422  23445555555555555


Q ss_pred             CccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCcc--cc---
Q 020161          196 RIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLVD--DI---  268 (330)
Q Consensus       196 ~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~--~~---  268 (330)
                      .+.....                   ..+..+++|+.|++++|.++.+  ..+..+++|+.|++++|+++.++  .+   
T Consensus        99 ~l~~~~~-------------------~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~  159 (361)
T 2xot_A           99 HLHTLDE-------------------FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG  159 (361)
T ss_dssp             CCCEECT-------------------TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC--
T ss_pred             cCCcCCH-------------------HHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCc
Confidence            5444310                   1234444555555555554443  23444555555555555555441  11   


Q ss_pred             ccCCCCCeEeCCCCCCCchHHHHHHHhccccc--cchhhccCCCcc
Q 020161          269 QNLSRLEDLWLNDNQIESLESIVEAVAGSRET--LTTIYLENNPCK  312 (330)
Q Consensus       269 ~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~--L~~l~l~~n~~~  312 (330)
                      ..+++|+.|++++|+++.++   ...+..++.  ++.|++++|++.
T Consensus       160 ~~l~~L~~L~L~~N~l~~l~---~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          160 NKLPKLMLLDLSSNKLKKLP---LTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             --CTTCCEEECCSSCCCCCC---HHHHHHSCHHHHTTEECCSSCEE
T ss_pred             ccCCcCCEEECCCCCCCccC---HHHhhhccHhhcceEEecCCCcc
Confidence            33455555555555555443   122233333  244555555543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.62  E-value=2.3e-15  Score=122.75  Aligned_cols=143  Identities=23%  Similarity=0.326  Sum_probs=116.0

Q ss_pred             CcEEEccCCCCCCcccccCCCCccEEEcCCcccccc---ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCC
Q 020161          143 LKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM---ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSN  216 (330)
Q Consensus       143 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~  216 (330)
                      -+.++++++.+..++. .-...+++|++++|.++..   ..+..+++|+.|++++|.+...   .+..+++|++|++++|
T Consensus        13 ~~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           13 GTTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TTEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CCEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            3578888888877532 1234578999999988644   2377889999999999988876   4778889999999999


Q ss_pred             cccccc--ccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCc
Q 020161          217 RLTSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       217 ~l~~~~--~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      .++..+  .+..+++|+.|++++|.++++  ..+..+++|++|++++|+++.+  ..+..+++|+.|++++|++..
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  167 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC  167 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence            988874  377889999999999999886  4578889999999999999887  567888999999999998874

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.59  E-value=3.4e-14  Score=116.49  Aligned_cols=145  Identities=27%  Similarity=0.379  Sum_probs=101.3

Q ss_pred             cCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEc
Q 020161           48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDV  125 (330)
Q Consensus        48 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l  125 (330)
                      -+.++++++++..+|..+.  ++|++|++++|.+....+   ..|..+++|++|++++|.++.++.  +..+++|++|++
T Consensus        21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~---~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEP---GVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCT---TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCH---HHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            5678999999999987553  899999999999988643   356678999999999999988875  678899999999


Q ss_pred             cCCCCcCccccc-cccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCc
Q 020161          126 SFNEITSSHGLS-NVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRI  197 (330)
Q Consensus       126 ~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i  197 (330)
                      ++|.+..++... ..+++|+.|++++|.+..+ ..+..+++|+.|++++|.++.+  ..+..+++|+.|++++|.+
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  171 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPW  171 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCB
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCc
Confidence            999888776543 3366666777766666553 3345555555555555555422  1234444555555554443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=5.6e-14  Score=111.97  Aligned_cols=124  Identities=26%  Similarity=0.323  Sum_probs=101.3

Q ss_pred             CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC
Q 020161           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD  105 (330)
Q Consensus        26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  105 (330)
                      .++++++++.+..+|. ..++++++|++++|.++.+|..+.++++|++|++++|.++...   ...|..+++|++|++++
T Consensus        12 ~~~l~~~~~~l~~ip~-~~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~---~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPK-GIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS---NQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCCcCCC-CCCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC---HhHccCCCCCCEEECCC
Confidence            4689999999999886 4678999999999999999988999999999999999998863   34577899999999999


Q ss_pred             CcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCC
Q 020161          106 NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEV  153 (330)
Q Consensus       106 ~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~  153 (330)
                      |.++.+++  +..+++|++|++++|.+..++.. ...+++|+.|++.+|.+
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCe
Confidence            99998775  77889999999999988876653 22355566666666554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.56  E-value=4.1e-18  Score=157.69  Aligned_cols=120  Identities=25%  Similarity=0.351  Sum_probs=74.3

Q ss_pred             CCcEEECcCCCcccc-ccCCCCcccEEECCCCcccccc-ccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCC
Q 020161          186 NLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMK-GFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT  263 (330)
Q Consensus       186 ~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~  263 (330)
                      .|+.|++++|.+... .+..+++|+.|++++|.++..| .+..+++|+.|++++|.+++++.+..+++|+.|++++|+++
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~  521 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQ  521 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCCCC
Confidence            356666666665554 3555566666666666666553 45566667777777776666666666667777777777666


Q ss_pred             Cc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhh
Q 020161          264 LV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY  305 (330)
Q Consensus       264 ~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~  305 (330)
                      +.   ..+..+++|+.|++++|+++.+++....+...+|+|+.|+
T Consensus       522 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          522 QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence            55   3466666777777777766655433334444456666553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.56  E-value=5.4e-15  Score=116.19  Aligned_cols=133  Identities=20%  Similarity=0.218  Sum_probs=88.0

Q ss_pred             ccCCCCCcEEECcCCCcccc-ccCCCC-cccEEECCCCccccccccccccccceEEccCCCCCCCcC--CCCCCCCCEEE
Q 020161          181 LQNLTNLQELWLGRNRIKVV-NLCGLK-CIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHVLD  256 (330)
Q Consensus       181 l~~~~~L~~L~l~~~~i~~~-~~~~~~-~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~--~~~~~~L~~L~  256 (330)
                      +..+++|++|++++|.+... .+.... +|+.|++++|.+++.+.+..++.|+.|++++|.+++++.  +..+++|+.|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            34445555555555555443 222222 666666666666666566677777777777777776642  36677888888


Q ss_pred             cCCCCCCCcc---ccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCccc
Q 020161          257 VSSNKLTLVD---DIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       257 l~~n~~~~~~---~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      +++|+++.++   .+..+++|+.|++++|+++.++..-..++..+++|+.|++++|....
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            8888877663   56777888888888888876655434456777888888888877543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.54  E-value=1.7e-14  Score=112.45  Aligned_cols=130  Identities=24%  Similarity=0.226  Sum_probs=96.9

Q ss_pred             CCCcEEECcCCCcc--cc--ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCC-CcCC-CCCCCCCEEEcC
Q 020161          185 TNLQELWLGRNRIK--VV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK-MEGL-STLVNLHVLDVS  258 (330)
Q Consensus       185 ~~L~~L~l~~~~i~--~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~-~~~~-~~~~~L~~L~l~  258 (330)
                      +++++|++++|.+.  ..  .+..+++|+.|++++|.++....+..+++|+.|++++|.+++ ++.+ ..+++|+.|+++
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  103 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLS  103 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECB
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEecc
Confidence            45666666666655  22  235566777777777777766667778888888888888887 4443 347889999999


Q ss_pred             CCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161          259 SNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       259 ~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      +|+++++   ..+..+++|+.|++++|+++.++......+..+++|+.|++++|.....
T Consensus       104 ~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  162 (168)
T 2ell_A          104 GNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA  162 (168)
T ss_dssp             SSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred             CCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence            9988876   4677888999999999998877654446778889999999999886554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=2.9e-14  Score=108.79  Aligned_cols=124  Identities=24%  Similarity=0.244  Sum_probs=89.8

Q ss_pred             CCCcEEECcCCCcc--cc--ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCC-CcC-CCCCCCCCEEEcC
Q 020161          185 TNLQELWLGRNRIK--VV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISK-MEG-LSTLVNLHVLDVS  258 (330)
Q Consensus       185 ~~L~~L~l~~~~i~--~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~-~~~-~~~~~~L~~L~l~  258 (330)
                      ++++.|++++|.+.  ..  .+..+++|+.|++++|.++..+.+..++.|+.|++++|.+++ ++. +..+++|++|+++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls   96 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLS   96 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECT
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECC
Confidence            45666666666655  22  345666777777777777766666777888888888888877 543 3347888888888


Q ss_pred             CCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccC
Q 020161          259 SNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN  308 (330)
Q Consensus       259 ~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~  308 (330)
                      +|++++.   ..+..+++|++|++++|+++.++......+..+++|+.|++++
T Consensus        97 ~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           97 GNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             TSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8888875   5677888888888888888877654445677788888888753

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.53  E-value=1.1e-13  Score=110.18  Aligned_cols=125  Identities=24%  Similarity=0.343  Sum_probs=97.4

Q ss_pred             CcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh--hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           26 NTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        26 l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      .++++++++.+..+|. ..++++++|++++|.+..++..  +..+++|++|++++|.+++..+   ..|..+++|++|++
T Consensus        10 ~~~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L   85 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP---NAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT---TTTTTCTTCCEEEC
T ss_pred             CCEEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH---hHcCCcccCCEEEC
Confidence            4788999999988886 4566999999999999988763  8899999999999999988633   45667899999999


Q ss_pred             cCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc-ccccCCCcEEEccCCCCC
Q 020161          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL-SNVTDTLKELYVSKNEVP  154 (330)
Q Consensus       104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  154 (330)
                      ++|.++.++.  +..+++|++|++++|.+.+..+. ...+++|+.|++++|.+.
T Consensus        86 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            9999987664  67788888998888888766432 233556666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=2.3e-14  Score=111.63  Aligned_cols=85  Identities=21%  Similarity=0.270  Sum_probs=43.6

Q ss_pred             CCCCcCEEecCCCCCC--ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcC-CCC-CCCCCc
Q 020161           44 FPTNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD-VSIFKK  119 (330)
Q Consensus        44 ~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~-~~~~~~  119 (330)
                      .+++|++|++++|.+.  .+|..+..+++|++|++++|.+...     ..+..+++|++|++++|.+.. +|. +..+++
T Consensus        22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   96 (168)
T 2ell_A           22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-----SNLPKLPKLKKLELSENRIFGGLDMLAEKLPN   96 (168)
T ss_dssp             CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-----SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTT
T ss_pred             CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-----hhhccCCCCCEEECcCCcCchHHHHHHhhCCC
Confidence            3455666666666555  4554455555555555555555442     233445555555555555554 332 223455


Q ss_pred             ccEEEccCCCCcCc
Q 020161          120 LSVFDVSFNEITSS  133 (330)
Q Consensus       120 L~~L~l~~~~~~~~  133 (330)
                      |++|++++|.+..+
T Consensus        97 L~~L~Ls~N~l~~~  110 (168)
T 2ell_A           97 LTHLNLSGNKLKDI  110 (168)
T ss_dssp             CCEEECBSSSCCSS
T ss_pred             CCEEeccCCccCcc
Confidence            55555555544443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=1.2e-14  Score=125.83  Aligned_cols=96  Identities=17%  Similarity=0.289  Sum_probs=63.1

Q ss_pred             CCcccEEECCCCcccccc--ccccccccceEEccCCCCCCC--cCCCCCCCCC-EEEcCCCCCCCc--cccccCCCCCeE
Q 020161          205 LKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKM--EGLSTLVNLH-VLDVSSNKLTLV--DDIQNLSRLEDL  277 (330)
Q Consensus       205 ~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~-~L~l~~n~~~~~--~~~~~~~~L~~L  277 (330)
                      +++|+.+++.+|.++.++  .+..|.+|+.+++.++ ++.+  .+|.++.+|+ .+.+.+ .++.+  ..+.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            566777777776666553  4666777777777665 5554  2466677777 777766 55544  556677777777


Q ss_pred             eCCCCCCCchHHHHHHHhccccccchhh
Q 020161          278 WLNDNQIESLESIVEAVAGSRETLTTIY  305 (330)
Q Consensus       278 ~l~~n~l~~~~~~~~~~~~~~~~L~~l~  305 (330)
                      ++.+|.++.++   ..++.+|++|+.++
T Consensus       303 ~l~~n~i~~I~---~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          303 LATGDKITTLG---DELFGNGVPSKLIY  327 (329)
T ss_dssp             EECSSCCCEEC---TTTTCTTCCCCEEE
T ss_pred             EeCCCccCccc---hhhhcCCcchhhhc
Confidence            77777777665   34566777777654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.51  E-value=4.8e-15  Score=137.21  Aligned_cols=189  Identities=19%  Similarity=0.234  Sum_probs=140.9

Q ss_pred             CCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCc-------------CCccccccchhhcccCCCcEEE-ccCCcC
Q 020161           43 EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNL-------------IDDAAIEPISRWDALAGLEELI-LRDNKL  108 (330)
Q Consensus        43 ~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~~~L~~L~-l~~~~l  108 (330)
                      ...++|+.|++++|.++.+|..++.+++|+.|++++|.             ..+.   .+..+..+++|+.|+ ++.+.+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~---~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY---EKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGG---HHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccC---CHHHHHHHHhcccCcchhhccc
Confidence            34688999999999999999999999999999997764             2222   222345566677776 444433


Q ss_pred             cCCCC-------CCC--CCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCcccccc
Q 020161          109 MKIPD-------VSI--FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSNRLRVM  178 (330)
Q Consensus       109 ~~~~~-------~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~  178 (330)
                      ..++.       +..  ...|+.|++++|.+..++. ...+++|+.|++++|.+..+ ..+..+++|+.|++++|.++.+
T Consensus       423 ~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l  501 (567)
T 1dce_A          423 DDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             chhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC
Confidence            22211       000  1258889999998888776 55578899999999988874 5688889999999999988766


Q ss_pred             ccccCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCccccccc-----cccccccceEEc
Q 020161          179 ENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSMKG-----FEECIALEELYL  235 (330)
Q Consensus       179 ~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~~~~~-----~~~~~~L~~l~l  235 (330)
                      +.+..+++|+.|++++|.+.+.    .+..+++|+.|++++|.+++.+.     +..+++|+.|++
T Consensus       502 p~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             GGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             cccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            6888889999999999987765    46778899999999998887743     234778888753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=5.8e-14  Score=111.88  Aligned_cols=118  Identities=25%  Similarity=0.439  Sum_probs=74.0

Q ss_pred             cEEEcCCccccccc-cccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCC
Q 020161          166 QILEFGSNRLRVME-NLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGI  240 (330)
Q Consensus       166 ~~L~l~~~~~~~~~-~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~  240 (330)
                      +.++++++.++.++ .+  .+.+++|++++|.+...  .+..+++|+.|++++|.++..+  .+..++.|+.|++++|.+
T Consensus        13 ~~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPKGI--PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCCcCCCCC--CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            46666666665332 22  24667777777766554  4556666777777777666653  356666677777777766


Q ss_pred             CCCc--CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCC
Q 020161          241 SKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       241 ~~~~--~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~  285 (330)
                      +.++  .+..+++|+.|++++|+++.+  ..+..+++|+.|++++|++.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            6653  356666777777777766655  23556666777777776665

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.50  E-value=3e-14  Score=108.67  Aligned_cols=82  Identities=22%  Similarity=0.265  Sum_probs=37.7

Q ss_pred             CCcCEEecCCCCCC--ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcC-CCC-CCCCCccc
Q 020161           46 TNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMK-IPD-VSIFKKLS  121 (330)
Q Consensus        46 ~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~-~~~~~~L~  121 (330)
                      +++++|++++|.+.  .+|..+..+++|++|++++|.+...     ..+..+++|++|++++|.++. +|. +..+++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-----~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~   91 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-----ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT   91 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-----TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-----hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence            44555555555554  4444444555555555555544442     223344445555555544444 322 22244444


Q ss_pred             EEEccCCCCcC
Q 020161          122 VFDVSFNEITS  132 (330)
Q Consensus       122 ~L~l~~~~~~~  132 (330)
                      +|++++|.+..
T Consensus        92 ~L~ls~N~i~~  102 (149)
T 2je0_A           92 HLNLSGNKIKD  102 (149)
T ss_dssp             EEECTTSCCCS
T ss_pred             EEECCCCcCCC
Confidence            44444444433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.49  E-value=7.1e-14  Score=111.34  Aligned_cols=120  Identities=23%  Similarity=0.377  Sum_probs=96.1

Q ss_pred             ccEEEcCCcccccc-ccccCCCCCcEEECcCCCccccc----cCCCCcccEEECCCCccccc--cccccccccceEEccC
Q 020161          165 LQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVVN----LCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSH  237 (330)
Q Consensus       165 L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~~i~~~~----~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~  237 (330)
                      .+.++++++.++.+ ..+.  ..+++|++++|.+....    +..+++|++|++++|.+++.  ..+..++.|+.|++++
T Consensus        10 ~~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence            36888888887644 3333  37899999999887662    67788899999999988877  3577888999999999


Q ss_pred             CCCCCCc--CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCc
Q 020161          238 NGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIES  286 (330)
Q Consensus       238 ~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~  286 (330)
                      |.+++++  .+..+++|++|++++|++++.  ..+..+++|++|++++|++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccC
Confidence            9988864  377888999999999998877  567788899999999998874

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.49  E-value=2e-13  Score=118.24  Aligned_cols=95  Identities=20%  Similarity=0.286  Sum_probs=79.4

Q ss_pred             CCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccc-eEEccCCCCCCC--cCCCCCCCCCE
Q 020161          183 NLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALE-ELYLSHNGISKM--EGLSTLVNLHV  254 (330)
Q Consensus       183 ~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~-~l~l~~~~~~~~--~~~~~~~~L~~  254 (330)
                      .+++|+.++++.|.+...   .|..+.+|+.+.+.+| ++.+  ..+..|.+|+ .+.+.. +++.+  .+|.++++|+.
T Consensus       224 ~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          224 YMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             HCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             hcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            378899999999877666   6888999999999887 6555  4588999999 999988 77766  46889999999


Q ss_pred             EEcCCCCCCCc--cccccCCCCCeEeC
Q 020161          255 LDVSSNKLTLV--DDIQNLSRLEDLWL  279 (330)
Q Consensus       255 L~l~~n~~~~~--~~~~~~~~L~~L~l  279 (330)
                      +++++|.++.+  ..+.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            99999999877  57889999998864

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=7.5e-13  Score=103.95  Aligned_cols=127  Identities=28%  Similarity=0.381  Sum_probs=96.8

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      +.+.++++++++..+|. ..++++++|++++|.+..++.. +..+++|++|++++|.++...   ...+..+++|++|++
T Consensus         8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLP---DGVFDKLTKLTILYL   83 (177)
T ss_dssp             ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEEC
T ss_pred             CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeC---hhHccCCCccCEEEC
Confidence            45788888888888874 5568999999999999887764 688999999999999888652   234567888999999


Q ss_pred             cCCcCcCCCC--CCCCCcccEEEccCCCCcCccccc-cccCCCcEEEccCCCCCC
Q 020161          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPK  155 (330)
Q Consensus       104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~  155 (330)
                      ++|.++.++.  +..+++|++|++++|.+..++... ..+++|+.|++++|.+..
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            9998888775  577888888888888887666533 235666666666665543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.46  E-value=4.4e-13  Score=105.29  Aligned_cols=123  Identities=23%  Similarity=0.366  Sum_probs=97.2

Q ss_pred             CccEEEcCCccccccccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccccc--cccccccceEEccCC
Q 020161          164 DLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMKG--FEECIALEELYLSHN  238 (330)
Q Consensus       164 ~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~l~l~~~  238 (330)
                      ..+.++++++.++.++. ...+++++|++++|.+...   .+..+++|++|++++|.++..+.  +..+++|+.|++++|
T Consensus         8 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             ETTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            35678888887764432 2236899999999988766   35778899999999998887743  678899999999999


Q ss_pred             CCCCCcC--CCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCch
Q 020161          239 GISKMEG--LSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESL  287 (330)
Q Consensus       239 ~~~~~~~--~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~  287 (330)
                      .+++++.  +..+++|++|++++|+++.+  ..+..+++|++|++++|++...
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            9988753  67888999999999999877  3357788999999999998854

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.46  E-value=9.7e-14  Score=108.97  Aligned_cols=125  Identities=18%  Similarity=0.319  Sum_probs=60.9

Q ss_pred             CCCcCEEecCCCCCCChhhhhhc-CCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCccc
Q 020161           45 PTNLTELDLTANRLTSLDSRISH-LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLS  121 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~l~~~~~~-l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~  121 (330)
                      +++|++|++++|.+..++. +.. .++|++|++++|.+.+.     ..+..+++|++|++++|.++.+++  +..+++|+
T Consensus        18 ~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-----DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-----CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-----cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3445555555555554432 222 22555555555554442     233344555555555555554443  24455555


Q ss_pred             EEEccCCCCcCccc--cccccCCCcEEEccCCCCCCccc-----ccCCCCccEEEcCCccc
Q 020161          122 VFDVSFNEITSSHG--LSNVTDTLKELYVSKNEVPKMEE-----IEHFHDLQILEFGSNRL  175 (330)
Q Consensus       122 ~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~-----~~~~~~L~~L~l~~~~~  175 (330)
                      +|++++|.+..++.  ....+++|+.|++++|.+.....     +..+++|+.|+++.+..
T Consensus        92 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           92 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            55555555544443  22234555555555555544321     45566666666666554

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.44  E-value=3e-12  Score=113.48  Aligned_cols=253  Identities=13%  Similarity=0.178  Sum_probs=180.0

Q ss_pred             CCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcc
Q 020161           44 FPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKL  120 (330)
Q Consensus        44 ~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L  120 (330)
                      ++..++.+.+.+ .++.++.. |.++ +|+.+.+..+ +..+   ...+|.. .+|+.+.+.. .++.++.  +..+++|
T Consensus       111 ~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I---~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L  182 (401)
T 4fdw_A          111 ILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSI---GDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNL  182 (401)
T ss_dssp             ECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEE---CTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred             ecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEE---CHHhcCC-CCceEEEeCC-CccEehHHHhhCcccC
Confidence            346778888765 46666654 6665 7999998876 5444   2334555 4699999876 5665553  7888999


Q ss_pred             cEEEccCCCCcCccccccccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcccccc-ccccCCCCCcEEECcCC--
Q 020161          121 SVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRN--  195 (330)
Q Consensus       121 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~-~~l~~~~~L~~L~l~~~--  195 (330)
                      +.+++..|++..++...+.+.+|+.+.+..+ +..+  ..|..+.+|+.+.+..+-.... ..+.+ ++|+.+.+..+  
T Consensus       183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~-~~L~~i~lp~~i~  260 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRE-SGITTVKLPNGVT  260 (401)
T ss_dssp             CEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTT-CCCSEEEEETTCC
T ss_pred             CeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCcccccccc-CCccEEEeCCCcc
Confidence            9999999988888777666788999998755 4443  5688889999999987532222 23444 67888888554  


Q ss_pred             CccccccCCCCcccEEECCCCccc-----cc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc-
Q 020161          196 RIKVVNLCGLKCIKKISLQSNRLT-----SM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV-  265 (330)
Q Consensus       196 ~i~~~~~~~~~~L~~L~l~~~~l~-----~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-  265 (330)
                      .+....|..+++|+.+.+.++.+.     ..  ..+..|++|+.+.+. ++++.+  .+|.++.+|+.+.+..+ ++.+ 
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~  338 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQIN  338 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence            233447888899999998887654     22  457889999999988 446665  35788889999999554 6655 


Q ss_pred             -cccccCCCCCeEeCCCCCCCchHHHHHHHhcccc-ccchhhccCCCcc
Q 020161          266 -DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRE-TLTTIYLENNPCK  312 (330)
Q Consensus       266 -~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~-~L~~l~l~~n~~~  312 (330)
                       ..+.++ +|+.+++.+|.+..++   ...+..++ +++.|++-.+...
T Consensus       339 ~~aF~~~-~L~~l~l~~n~~~~l~---~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          339 FSAFNNT-GIKEVKVEGTTPPQVF---EKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TTSSSSS-CCCEEEECCSSCCBCC---CSSCCCSCTTCCEEEECGGGHH
T ss_pred             HHhCCCC-CCCEEEEcCCCCcccc---cccccCCCCCccEEEeCHHHHH
Confidence             567788 8999999998877654   34455664 6777777766643

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.38  E-value=4.6e-12  Score=98.66  Aligned_cols=106  Identities=27%  Similarity=0.355  Sum_probs=90.8

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      +.++++++++.+..+|. ..++++++|++++|.|+.+++ .|.++++|++|++++|.+....   ...|..+++|++|++
T Consensus        10 ~~~~l~~s~n~l~~ip~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~---~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPT-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLP---AGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCC---TTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCccCc-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccC---hhhccCCCCCCEEEC
Confidence            56789999999999886 456899999999999998854 5899999999999999998763   334677899999999


Q ss_pred             cCCcCcCCCC--CCCCCcccEEEccCCCCcCcc
Q 020161          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSH  134 (330)
Q Consensus       104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~  134 (330)
                      ++|.++.++.  +..+++|++|++++|.+....
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9999998875  778899999999999887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=9.6e-12  Score=97.23  Aligned_cols=107  Identities=26%  Similarity=0.375  Sum_probs=90.1

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      ..+.++++++.+..+|. ..+++|++|++++|.+.++++ .|.++++|++|++++|.+....   ...|..+++|++|++
T Consensus        13 ~~~~l~~~~n~l~~iP~-~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~---~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           13 DQTLVNCQNIRLASVPA-GIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIP---TGVFDKLTQLTQLDL   88 (174)
T ss_dssp             CSSEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC---TTTTTTCTTCCEEEC
T ss_pred             CCcEEEeCCCCCCccCC-CcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccC---hhHhCCcchhhEEEC
Confidence            45789999999999886 456899999999999998854 6889999999999999998852   234567899999999


Q ss_pred             cCCcCcCCCC--CCCCCcccEEEccCCCCcCccc
Q 020161          104 RDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHG  135 (330)
Q Consensus       104 ~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~  135 (330)
                      ++|.++.++.  +..+++|++|++++|.+.....
T Consensus        89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~  122 (174)
T 2r9u_A           89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECR  122 (174)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTBG
T ss_pred             CCCccceeCHHHhccccCCCEEEeCCCCcccccc
Confidence            9999998875  7788999999999998876543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.33  E-value=7.4e-15  Score=117.70  Aligned_cols=133  Identities=30%  Similarity=0.409  Sum_probs=99.5

Q ss_pred             cccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccc-cccccccceEEccCCCCCCCcCCCCCCCCCEEEc
Q 020161          180 NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKG-FEECIALEELYLSHNGISKMEGLSTLVNLHVLDV  257 (330)
Q Consensus       180 ~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l  257 (330)
                      .+..+++|++|++++|.+... .+..+++|+.|++++|.++..+. +..+++|+.|++++|.+++++.+..+++|++|++
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l  122 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHHHHHHHHHSSEEEE
T ss_pred             HHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCCccccCCCCCEEEC
Confidence            455666677777776665554 44555677777777777776643 3456889999999999988877778889999999


Q ss_pred             CCCCCCCc---cccccCCCCCeEeCCCCCCCch-------HHHHHHHhccccccchhhccCCCcccc
Q 020161          258 SSNKLTLV---DDIQNLSRLEDLWLNDNQIESL-------ESIVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       258 ~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~-------~~~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      ++|+++.+   ..+..+++|++|++++|+++..       +......+..+++|+.|+  ++++...
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~~  187 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD  187 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTTT
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCHH
Confidence            99999876   3578899999999999988754       333445578889999865  7776553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.31  E-value=2.5e-10  Score=101.14  Aligned_cols=249  Identities=10%  Similarity=0.169  Sum_probs=174.1

Q ss_pred             CCCcEEeccCcccccCCCCCC-CCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161           24 LSNTVLDLTSFQLHDLDSVEF-PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~-~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  101 (330)
                      ..++.+.+.+ .+..++...| -.+|+.+.+..+ ++.++.. |.++ +|+.+.+.. .+..+   ...+|..|++|+.+
T Consensus       113 ~~l~~i~ip~-~i~~I~~~aF~~~~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I---~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          113 KGYNEIILPN-SVKSIPKDAFRNSQIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQL---KEDIFYYCYNLKKA  185 (401)
T ss_dssp             SSCSEEECCT-TCCEECTTTTTTCCCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEE---CSSTTTTCTTCCEE
T ss_pred             CCccEEEECC-ccCEehHhhcccCCccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEe---hHHHhhCcccCCee
Confidence            4444444433 2444443333 136888888766 7777664 6564 799999986 45444   33467889999999


Q ss_pred             EccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCccccc
Q 020161          102 ILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRV  177 (330)
Q Consensus       102 ~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~  177 (330)
                      ++..+.++.++. ...+.+|+.+.+..+ +..+....+. +.+|+.+.+..+ +..+  ..|.. .+|+.+.+.++-...
T Consensus       186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~~i~~I  262 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPNGVTNI  262 (401)
T ss_dssp             ECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEETTCCEE
T ss_pred             ecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCCCccEE
Confidence            999988888775 333688999998754 6665554444 788999999875 3332  34555 789999985432222


Q ss_pred             -cccccCCCCCcEEECcCCCcc--------ccccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--c
Q 020161          178 -MENLQNLTNLQELWLGRNRIK--------VVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--E  244 (330)
Q Consensus       178 -~~~l~~~~~L~~L~l~~~~i~--------~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~  244 (330)
                       ...+.+|++|+.+.+..+.+.        ...|..+++|+.+.+.+ .++.+  ..+..|..|+.+.+.. +++.+  .
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~-~l~~I~~~  340 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA-NVTQINFS  340 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT-TCCEECTT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc-cccEEcHH
Confidence             245788999999999887543        33788999999999985 45555  4688999999999954 46665  4


Q ss_pred             CCCCCCCCCEEEcCCCCCCCc--cccccC-CCCCeEeCCCCCCC
Q 020161          245 GLSTLVNLHVLDVSSNKLTLV--DDIQNL-SRLEDLWLNDNQIE  285 (330)
Q Consensus       245 ~~~~~~~L~~L~l~~n~~~~~--~~~~~~-~~L~~L~l~~n~l~  285 (330)
                      +|.++ +|+.+.+++|....+  ..+..+ ..+..+.+..+.+.
T Consensus       341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            57888 999999999987766  445555 47889998887644

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.29  E-value=6.5e-14  Score=112.16  Aligned_cols=123  Identities=24%  Similarity=0.373  Sum_probs=85.7

Q ss_pred             CcCEEecCCC--CCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEE
Q 020161           47 NLTELDLTAN--RLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVF  123 (330)
Q Consensus        47 ~L~~L~l~~~--~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L  123 (330)
                      .++...+.+.  .++.+|..+..+++|++|++++|.+...   +  .+..+++|++|++++|.++.+|. +..+++|++|
T Consensus        24 ~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l---~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L   98 (198)
T 1ds9_A           24 EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI---S--SLSGMENLRILSLGRNLIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCC---C--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEE
T ss_pred             chheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCccc---c--ccccCCCCCEEECCCCCcccccchhhcCCcCCEE
Confidence            4556666554  5556666788888888888888887763   1  55667888888888888887776 4455778888


Q ss_pred             EccCCCCcCccccccccCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCccc
Q 020161          124 DVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRL  175 (330)
Q Consensus       124 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~  175 (330)
                      ++++|.+..++. ...+++|+.|++++|.+...   ..+..+++|++|++++|.+
T Consensus        99 ~L~~N~l~~l~~-~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l  152 (198)
T 1ds9_A           99 WISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL  152 (198)
T ss_dssp             EEEEEECCCHHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred             ECcCCcCCcCCc-cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence            888887776552 33356777777777776653   2356666677777766665

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.25  E-value=1.1e-12  Score=115.12  Aligned_cols=148  Identities=22%  Similarity=0.236  Sum_probs=104.4

Q ss_pred             cCCCcEEEccCCCCCCcc--c----cc-CCCCccEEEcCCccccc--ccc-ccCCCCCcEEECcCCCccccc-------c
Q 020161          140 TDTLKELYVSKNEVPKME--E----IE-HFHDLQILEFGSNRLRV--MEN-LQNLTNLQELWLGRNRIKVVN-------L  202 (330)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~--~----~~-~~~~L~~L~l~~~~~~~--~~~-l~~~~~L~~L~l~~~~i~~~~-------~  202 (330)
                      .+.++.|++++|.+....  .    +. ..++|++|++++|.++.  ... ...+++|+.|++++|.+++.+       +
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            577889999999887621  1    22 33688999999888752  111 223457888899888887651       1


Q ss_pred             -CCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc----
Q 020161          203 -CGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV----  265 (330)
Q Consensus       203 -~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~----  265 (330)
                       ...++|+.|++++|.++..      ..+..+++|++|++++|.+++.      ..+...++|++|++++|.+++.    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~  230 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA  230 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence             3457788888888887654      1245677888888888888752      3456667888888888888754    


Q ss_pred             --cccccCCCCCeEeCCCCCCCch
Q 020161          266 --DDIQNLSRLEDLWLNDNQIESL  287 (330)
Q Consensus       266 --~~~~~~~~L~~L~l~~n~l~~~  287 (330)
                        ..+..++.|++|++++|.|++.
T Consensus       231 l~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          231 LARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHHhCCCCCEEeccCCCCCHH
Confidence              3345667888888888888864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.23  E-value=1.4e-12  Score=114.55  Aligned_cols=148  Identities=18%  Similarity=0.222  Sum_probs=87.9

Q ss_pred             CcccEEEccCCCCcCcccc--c---c-ccCCCcEEEccCCCCCCc--cc-ccCCCCccEEEcCCcccccc------ccc-
Q 020161          118 KKLSVFDVSFNEITSSHGL--S---N-VTDTLKELYVSKNEVPKM--EE-IEHFHDLQILEFGSNRLRVM------ENL-  181 (330)
Q Consensus       118 ~~L~~L~l~~~~~~~~~~~--~---~-~~~~L~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~~~~~~~------~~l-  181 (330)
                      +.|+.|++++|.+......  .   . .+.+|+.|++++|.+...  .. ...+++|+.|++++|.++..      ..+ 
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            5577777777776542211  1   1 125677777777766541  11 22345677777777766421      112 


Q ss_pred             cCCCCCcEEECcCCCcccc-------ccCCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC-----
Q 020161          182 QNLTNLQELWLGRNRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM-----  243 (330)
Q Consensus       182 ~~~~~L~~L~l~~~~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~-----  243 (330)
                      ...+.|++|++++|.+++.       .+...++|++|++++|.++..      ..+..++.|+.|++++|.+++.     
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2356677777777776553       234566677777777776653      2345566777777777777652     


Q ss_pred             -cCCCCCCCCCEEEcCCCCCCCc
Q 020161          244 -EGLSTLVNLHVLDVSSNKLTLV  265 (330)
Q Consensus       244 -~~~~~~~~L~~L~l~~n~~~~~  265 (330)
                       ..+...++|++|++++|.+++.
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~  254 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSE  254 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHH
T ss_pred             HHHHHhCCCCCEEeccCCCCCHH
Confidence             2234556777777777777654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.22  E-value=3.5e-11  Score=114.74  Aligned_cols=106  Identities=23%  Similarity=0.196  Sum_probs=57.2

Q ss_pred             CCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccEEE
Q 020161           46 TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSVFD  124 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~  124 (330)
                      +.|+.|++++|.+..++..+..+++|++|++++|.++..    +..+..+++|++|+|++|.++.+|. +..+++|++|+
T Consensus       224 ~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~l----p~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          224 QLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL----PAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCC----CGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEE
T ss_pred             CCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCccc----ChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEE
Confidence            455555555555555555555555555555555555521    1234445555555555555555543 45555555555


Q ss_pred             ccCCCCcCccccccccCCCcEEEccCCCCCC
Q 020161          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPK  155 (330)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  155 (330)
                      +++|.+..++.....+++|+.|++++|.+.+
T Consensus       300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             CCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            5555555554443445555555555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.21  E-value=2.9e-11  Score=115.33  Aligned_cols=151  Identities=21%  Similarity=0.182  Sum_probs=92.8

Q ss_pred             ccCCCcEEeccCcccccCCCCC-CCC-----CcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhccc
Q 020161           22 IDLSNTVLDLTSFQLHDLDSVE-FPT-----NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDAL   95 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~~~-~~~-----~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~   95 (330)
                      -.+..+.|++.++.+...+... ...     .+..++++.+.+...+..+..++.|+.|++++|.+....    ..+..+
T Consensus       171 s~~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~----~~~~~l  246 (727)
T 4b8c_D          171 STPLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNIS----ANIFKY  246 (727)
T ss_dssp             ---------------------------------------------------CCCCCCEEECTTSCCSCCC----GGGGGC
T ss_pred             cCCccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCC----hhhcCC
Confidence            3455778888777776644211 111     233333344444444556889999999999999988532    234478


Q ss_pred             CCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCc-ccccCCCCccEEEcCCc
Q 020161           96 AGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM-EEIEHFHDLQILEFGSN  173 (330)
Q Consensus        96 ~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~L~~L~l~~~  173 (330)
                      +.|++|+|++|.++.+|. +..+++|++|++++|.+..++.....+.+|+.|++++|.+..+ ..+..+++|+.|++++|
T Consensus       247 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N  326 (727)
T 4b8c_D          247 DFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGN  326 (727)
T ss_dssp             CSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTS
T ss_pred             CCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCC
Confidence            999999999999998886 8899999999999999998877667789999999999998875 45889999999999999


Q ss_pred             ccc
Q 020161          174 RLR  176 (330)
Q Consensus       174 ~~~  176 (330)
                      .++
T Consensus       327 ~l~  329 (727)
T 4b8c_D          327 PLE  329 (727)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            885

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.20  E-value=1e-10  Score=90.96  Aligned_cols=103  Identities=21%  Similarity=0.265  Sum_probs=78.7

Q ss_pred             CcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEE
Q 020161           47 NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD  124 (330)
Q Consensus        47 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~  124 (330)
                      ..++++++++.++.+|..+  .++|++|++++|.+....+   ..|..+++|++|++++|.++.++.  +..+++|++|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~   84 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEP---GVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS   84 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCT---TTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccCh---hhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence            3578999999999988755  3789999999999888633   356678899999999999988775  57788888888


Q ss_pred             ccCCCCcCcccc-ccccCCCcEEEccCCCCC
Q 020161          125 VSFNEITSSHGL-SNVTDTLKELYVSKNEVP  154 (330)
Q Consensus       125 l~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  154 (330)
                      +++|.+..++.. ...+++|+.|++++|.+.
T Consensus        85 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           85 LNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            888888776653 333566666666666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.20  E-value=1.1e-10  Score=91.13  Aligned_cols=102  Identities=25%  Similarity=0.329  Sum_probs=79.6

Q ss_pred             cCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEc
Q 020161           48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDV  125 (330)
Q Consensus        48 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l  125 (330)
                      -+.++++++++..+|..+.  ++|++|++++|.+.+..   ...|..+++|++|++++|.++.+|.  +..+++|++|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~---~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L   88 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLE---PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL   88 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCC---TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccC---HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence            4789999999999988653  88999999999998863   3356678999999999999998876  577889999999


Q ss_pred             cCCCCcCcccc-ccccCCCcEEEccCCCCC
Q 020161          126 SFNEITSSHGL-SNVTDTLKELYVSKNEVP  154 (330)
Q Consensus       126 ~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~  154 (330)
                      ++|.+..++.. ...+++|+.|++++|.+.
T Consensus        89 ~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           89 NDNHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence            99888876653 333566666666666554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.20  E-value=5e-10  Score=99.27  Aligned_cols=102  Identities=15%  Similarity=0.199  Sum_probs=66.7

Q ss_pred             ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCe
Q 020161          201 NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLED  276 (330)
Q Consensus       201 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~  276 (330)
                      .+..+..++.+......+. ...+..|..|+.+.+..+ ++.+  .++.++.+|+.+++..+ ++.+  ..+.+|++|+.
T Consensus       271 ~F~~~~~l~~~~~~~~~i~-~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~  347 (394)
T 4fs7_A          271 LFYNCSGLKKVIYGSVIVP-EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSN  347 (394)
T ss_dssp             TTTTCTTCCEEEECSSEEC-TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCE
T ss_pred             ccccccccceeccCceeec-cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCE
Confidence            3444444444443332211 123556777777777543 4444  35778889999998654 6555  56788899999


Q ss_pred             EeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161          277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENN  309 (330)
Q Consensus       277 L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n  309 (330)
                      +.+..+ ++.++   ..++..|++|+.+++..+
T Consensus       348 i~lp~~-l~~I~---~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          348 INFPLS-LRKIG---ANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             ECCCTT-CCEEC---TTTBTTCTTCCEEEEEGG
T ss_pred             EEECcc-ccEeh---HHHhhCCCCCCEEEECCC
Confidence            999876 77665   466888999999888654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.14  E-value=1.2e-09  Score=96.81  Aligned_cols=275  Identities=15%  Similarity=0.196  Sum_probs=175.5

Q ss_pred             ccccccCCCcEEeccCcccccCCCCCC--CCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCc------------CC
Q 020161           18 QAVEIDLSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNL------------ID   82 (330)
Q Consensus        18 ~~~~~~~~l~~l~l~~~~l~~~~~~~~--~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~------------~~   82 (330)
                      .++....+++.+.+.. .+..++...|  +++|+.+++..+ ++.++. .|.++.+|+.+.+..+-            ..
T Consensus        65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~  142 (394)
T 4fs7_A           65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFK  142 (394)
T ss_dssp             TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCS
T ss_pred             HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccccc
Confidence            3445557788888864 3666665444  688999999754 666655 37778888777665320            00


Q ss_pred             cc-cc-----ccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccc------------------
Q 020161           83 DA-AI-----EPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGL------------------  136 (330)
Q Consensus        83 ~~-~~-----~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~------------------  136 (330)
                      .. .+     -...+|..+++|+.+.+..+. ..++.  +..+.+|+.+.+..+ +..+...                  
T Consensus       143 ~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~  220 (394)
T 4fs7_A          143 EITIPEGVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY  220 (394)
T ss_dssp             EEECCTTCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC
T ss_pred             ccccCccccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCce
Confidence            00 00     012356778889998886542 33332  566677777766544 2222111                  


Q ss_pred             -----ccccCCCcEEEccCCCCC-CcccccCCCCccEEEcCCccccc-cccccCCCCCcEEECcCCCccccccCCCCccc
Q 020161          137 -----SNVTDTLKELYVSKNEVP-KMEEIEHFHDLQILEFGSNRLRV-MENLQNLTNLQELWLGRNRIKVVNLCGLKCIK  209 (330)
Q Consensus       137 -----~~~~~~L~~L~l~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~  209 (330)
                           ...+..|+.+.+...... +...+..+..++.+.+..+.... ...+..+..++.+......+....+..+.+|+
T Consensus       221 ~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~  300 (394)
T 4fs7_A          221 YLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT  300 (394)
T ss_dssp             EECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred             EeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeecccccccccccc
Confidence                 111234444444322110 11345666777777776654432 23466777888888777766666888999999


Q ss_pred             EEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCC
Q 020161          210 KISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQ  283 (330)
Q Consensus       210 ~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~  283 (330)
                      .+.+..+ ++..  ..+..|.+|+.+.+.. .++.+  .+|.++.+|+.+.+..+ ++.+  ..+.+|++|+.+++..+ 
T Consensus       301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-  376 (394)
T 4fs7_A          301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-  376 (394)
T ss_dssp             EEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-
T ss_pred             ccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-
Confidence            9998765 4433  4688999999999964 36655  46889999999999876 6655  67899999999999764 


Q ss_pred             CCchHHHHHHHhccccccchh
Q 020161          284 IESLESIVEAVAGSRETLTTI  304 (330)
Q Consensus       284 l~~~~~~~~~~~~~~~~L~~l  304 (330)
                      ++.+    ...+.+|++|+.+
T Consensus       377 ~~~~----~~~F~~c~~L~~I  393 (394)
T 4fs7_A          377 LEQY----RYDFEDTTKFKWI  393 (394)
T ss_dssp             GGGG----GGGBCTTCEEEEE
T ss_pred             CEEh----hheecCCCCCcEE
Confidence            3433    2457888888764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.07  E-value=1.6e-08  Score=89.50  Aligned_cols=104  Identities=14%  Similarity=0.320  Sum_probs=50.7

Q ss_pred             ccCCCCcccEEECCCCccc-cccccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCC
Q 020161          201 NLCGLKCIKKISLQSNRLT-SMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLE  275 (330)
Q Consensus       201 ~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~  275 (330)
                      .|..+..|+.+.+..+..+ +...+..|..|+.+.+. +.++.+  ..|.++.+|+.+.+..+ ++.+  ..+.+|.+|+
T Consensus       260 aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~  337 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLE  337 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             eeeecccccEEecccccceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCC
Confidence            4555555555555433211 11234555555555553 223333  23555556666666433 3333  3455556666


Q ss_pred             eEeCCCCCCCchHHHHHHHhccccccchhhccCCC
Q 020161          276 DLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       276 ~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~  310 (330)
                      .+.+..+ ++.++   ..++.+|.+|+.+++.++.
T Consensus       338 ~i~ip~s-v~~I~---~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          338 RIAIPSS-VTKIP---ESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             EEEECTT-CCBCC---GGGGTTCTTCCEEEESSCH
T ss_pred             EEEECcc-cCEEh---HhHhhCCCCCCEEEECCce
Confidence            6666433 44443   2445556666666555543

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.04  E-value=1e-09  Score=95.48  Aligned_cols=106  Identities=23%  Similarity=0.166  Sum_probs=88.2

Q ss_pred             cEEeccCc-ccccCCCCCCCCCcCEEecCC-CCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           27 TVLDLTSF-QLHDLDSVEFPTNLTELDLTA-NRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        27 ~~l~l~~~-~l~~~~~~~~~~~L~~L~l~~-~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      ..++++++ .+..+|.+...++|++|++++ |.+..++. .|.++++|++|++++|.+.+..   ...|..+++|++|+|
T Consensus        11 ~~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~---~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA---PDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC---TTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeC---HHHhcCCcCCCEEeC
Confidence            56788888 899998855667899999996 99998885 5899999999999999999863   345678999999999


Q ss_pred             cCCcCcCCCC-CCCCCcccEEEccCCCCcCccc
Q 020161          104 RDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHG  135 (330)
Q Consensus       104 ~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~  135 (330)
                      ++|.++.+|. +.....|++|++.+|.+.....
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            9999999885 3333349999999999886544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.96  E-value=2.4e-09  Score=93.15  Aligned_cols=103  Identities=22%  Similarity=0.266  Sum_probs=87.5

Q ss_pred             CEEecCCC-CCCChhhhhhcCCCCCEEeCCC-CcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEE
Q 020161           49 TELDLTAN-RLTSLDSRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD  124 (330)
Q Consensus        49 ~~L~l~~~-~i~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~  124 (330)
                      ..++++++ +++.+|. +..+++|+.|++++ |.+...   ....|..+++|++|+|++|.++++++  +..+++|++|+
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~---~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~   86 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL---ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE---CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc---ChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEe
Confidence            45788998 9999999 99999999999996 999886   33457789999999999999998765  68899999999


Q ss_pred             ccCCCCcCccccccccCCCcEEEccCCCCCC
Q 020161          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPK  155 (330)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  155 (330)
                      +++|.+..++........|+.|++.+|.+.-
T Consensus        87 l~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           87 LSFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             CCSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             CCCCccceeCHHHcccCCceEEEeeCCCccC
Confidence            9999999888655544449999999988764

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.89  E-value=3.5e-07  Score=80.85  Aligned_cols=271  Identities=12%  Similarity=0.224  Sum_probs=169.2

Q ss_pred             CCCcEEeccCcccccCCCCCC--CCCcCEEecCCC---CCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCC
Q 020161           24 LSNTVLDLTSFQLHDLDSVEF--PTNLTELDLTAN---RLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAG   97 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~--~~~L~~L~l~~~---~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~   97 (330)
                      ..++.+.+... +..++...|  +.+|+.+.+..+   .++.+.. .|.++.+|+.+.+..+ +...   ...+|..+.+
T Consensus        64 ~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I---~~~aF~~c~~  138 (394)
T 4gt6_A           64 YVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI---DSEAFHHCEE  138 (394)
T ss_dssp             SCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE---CTTTTTTCTT
T ss_pred             CcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee---hhhhhhhhcc
Confidence            34778887653 666654444  689999998765   4666665 3788888988877664 3332   2345677888


Q ss_pred             CcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCC-cccccCCCCccEEEcCCc-
Q 020161           98 LEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPK-MEEIEHFHDLQILEFGSN-  173 (330)
Q Consensus        98 L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~L~~L~l~~~-  173 (330)
                      |+.+.+... +..+..  +..+..|+.+.+..+ +..+....+....|+.+.+..+...- ...+..+..++....... 
T Consensus       139 L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~  216 (394)
T 4gt6_A          139 LDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDSES  216 (394)
T ss_dssp             CCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSS
T ss_pred             cccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCcccccccchhhhccccceecccccc
Confidence            888888643 333332  666777888777654 33333333344556666665432111 123334444433332211 


Q ss_pred             -----------------------------------ccc--ccccccCCCCCcEEECcCCC--ccccccCCCCcccEEECC
Q 020161          174 -----------------------------------RLR--VMENLQNLTNLQELWLGRNR--IKVVNLCGLKCIKKISLQ  214 (330)
Q Consensus       174 -----------------------------------~~~--~~~~l~~~~~L~~L~l~~~~--i~~~~~~~~~~L~~L~l~  214 (330)
                                                         .+.  ....+..+..|+.+.+....  +....|..+..|+.+.+.
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~  296 (394)
T 4gt6_A          217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFS  296 (394)
T ss_dssp             SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccceecCcccccccccccccCC
Confidence                                               011  11246678889999987653  344478889999999996


Q ss_pred             CCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchH
Q 020161          215 SNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLE  288 (330)
Q Consensus       215 ~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~  288 (330)
                      . .++..  ..+..|.+|+.+.+..+ ++.+  .+|.++.+|+.+.+..+ ++.+  ..+.+|++|+.+++.++...   
T Consensus       297 ~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---  370 (394)
T 4gt6_A          297 S-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---  370 (394)
T ss_dssp             T-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---
T ss_pred             C-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---
Confidence            4 44444  46889999999999753 5555  46889999999999654 6655  67899999999999987522   


Q ss_pred             HHHHHHhccccccchhhccCCC
Q 020161          289 SIVEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       289 ~~~~~~~~~~~~L~~l~l~~n~  310 (330)
                         ...+..|.+|+.+.+..+.
T Consensus       371 ---~~~~~~~~~L~~i~i~~~~  389 (394)
T 4gt6_A          371 ---WNAISTDSGLQNLPVAPGS  389 (394)
T ss_dssp             ---HHTCBCCCCC---------
T ss_pred             ---hhhhhccCCCCEEEeCCCC
Confidence               2346778889988876554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.78  E-value=3.3e-09  Score=83.56  Aligned_cols=105  Identities=23%  Similarity=0.151  Sum_probs=51.3

Q ss_pred             ccCCCCCcEEECcCC-Ccccc-------ccCCCCcccEEECCCCcccccc------ccccccccceEEccCCCCCCC---
Q 020161          181 LQNLTNLQELWLGRN-RIKVV-------NLCGLKCIKKISLQSNRLTSMK------GFEECIALEELYLSHNGISKM---  243 (330)
Q Consensus       181 l~~~~~L~~L~l~~~-~i~~~-------~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~L~~l~l~~~~~~~~---  243 (330)
                      +...+.|++|++++| .+.+.       .+...++|++|++++|.++...      .+...+.|++|++++|.+++.   
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            445666777777776 66543       2344455666666666554431      223334455555555554431   


Q ss_pred             ---cCCCCCCCCCEEEc--CCCCCCCc------cccccCCCCCeEeCCCCCCC
Q 020161          244 ---EGLSTLVNLHVLDV--SSNKLTLV------DDIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       244 ---~~~~~~~~L~~L~l--~~n~~~~~------~~~~~~~~L~~L~l~~n~l~  285 (330)
                         ..+...++|++|++  ++|.+++.      ..+...+.|++|++++|.+.
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence               23344444555555  44444432      22333344555555554444

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.74  E-value=3.1e-06  Score=74.30  Aligned_cols=132  Identities=15%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             cCCCCCcEEECcCCC--ccccccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEE
Q 020161          182 QNLTNLQELWLGRNR--IKVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVL  255 (330)
Q Consensus       182 ~~~~~L~~L~l~~~~--i~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L  255 (330)
                      ..+..++.+.+..+-  +....+..+..|+.+.+..+ ++..  ..+..|..|+.+.+..+ +..+  ..+.++.+|+.+
T Consensus       214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i  291 (379)
T 4h09_A          214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKV  291 (379)
T ss_dssp             TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEE
T ss_pred             ccccccceeeeccceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccc
Confidence            344455555554431  22224556666666666543 3322  34556667777666432 3333  346677777777


Q ss_pred             EcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccccccc
Q 020161          256 DVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYP  320 (330)
Q Consensus       256 ~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  320 (330)
                      .+.++.++.+  ..+.+|.+|+.+.+..+ ++.|+   ..++.+|.+|+.+.+..+ ++.+...+|.
T Consensus       292 ~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~---~~aF~~C~~L~~i~ip~~-v~~I~~~aF~  353 (379)
T 4h09_A          292 VMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQ---VYAFKNCKALSTISYPKS-ITLIESGAFE  353 (379)
T ss_dssp             EECCTTCCEECTTTTTTCTTCCEEECCTT-CCEEC---TTTTTTCTTCCCCCCCTT-CCEECTTTTT
T ss_pred             cccccccceehhhhhcCCCCCCEEEcCcc-ccEEH---HHHhhCCCCCCEEEECCc-cCEEchhHhh
Confidence            7777777655  55677777777777653 55554   355777777777777443 4444444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=6e-09  Score=82.06  Aligned_cols=114  Identities=11%  Similarity=0.059  Sum_probs=91.6

Q ss_pred             ccCCCCcccEEECCCC-ccccc------cccccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc--
Q 020161          201 NLCGLKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV--  265 (330)
Q Consensus       201 ~~~~~~~L~~L~l~~~-~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~--  265 (330)
                      .+...+.|++|++++| .++..      ..+...++|++|++++|.+++.      ..+...++|++|++++|.+++.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4667789999999999 88765      2456778999999999999762      3456678899999999999864  


Q ss_pred             ----cccccCCCCCeEeC--CCCCCCchH-HHHHHHhccccccchhhccCCCcccc
Q 020161          266 ----DDIQNLSRLEDLWL--NDNQIESLE-SIVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       266 ----~~~~~~~~L~~L~l--~~n~l~~~~-~~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                          ..+...+.|++|++  ++|.+++.+ ..+..++..+++|+.|++++|.+...
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~  166 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPR  166 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChH
Confidence                45777889999999  889999642 23456677889999999999997654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.65  E-value=2.7e-08  Score=86.61  Aligned_cols=187  Identities=13%  Similarity=0.116  Sum_probs=111.3

Q ss_pred             CcccEEEccCCCCcC-c--------cccccccCCCcEEEccCCCCCC----------c-ccccCCCCccEEEcCCcc-cc
Q 020161          118 KKLSVFDVSFNEITS-S--------HGLSNVTDTLKELYVSKNEVPK----------M-EEIEHFHDLQILEFGSNR-LR  176 (330)
Q Consensus       118 ~~L~~L~l~~~~~~~-~--------~~~~~~~~~L~~L~l~~~~~~~----------~-~~~~~~~~L~~L~l~~~~-~~  176 (330)
                      ..++.|.+....+.+ .        ......+++|+.|.+.......          + ..+..+++|+.|.++++. +.
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~  186 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS  186 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce
Confidence            456677766554331 0        1112236789999886543211          1 224667889999987763 33


Q ss_pred             ccccccCCCCCcEEECcCCCcccc-----ccCCCCcccEEECCC--Cccc------cc-ccc--ccccccceEEccCCCC
Q 020161          177 VMENLQNLTNLQELWLGRNRIKVV-----NLCGLKCIKKISLQS--NRLT------SM-KGF--EECIALEELYLSHNGI  240 (330)
Q Consensus       177 ~~~~l~~~~~L~~L~l~~~~i~~~-----~~~~~~~L~~L~l~~--~~l~------~~-~~~--~~~~~L~~l~l~~~~~  240 (330)
                      .. .+. .++|+.|++..+.+...     ....+++|+.|+++.  +...      .. +.+  ..+++|+.|++.+|.+
T Consensus       187 l~-~~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i  264 (362)
T 2ra8_A          187 IG-KKP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEE  264 (362)
T ss_dssp             CC-SCB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTT
T ss_pred             ec-ccc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCC
Confidence            22 233 67889999888877654     123678888888753  1111      11 112  2468888888888887


Q ss_pred             CCC-----cCCCCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCC
Q 020161          241 SKM-----EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENN  309 (330)
Q Consensus       241 ~~~-----~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n  309 (330)
                      ++.     .....+++|++|+++.|.+++.      ..+..+++|+.|++++|.+++.  .+..+...+  ...++++++
T Consensus       265 ~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~--~~~~l~~al--g~~~~~~~~  340 (362)
T 2ra8_A          265 QNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE--MKKELQKSL--PMKIDVSDS  340 (362)
T ss_dssp             HHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHH--HHHHHHHHC--CSEEECCSB
T ss_pred             chHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHH--HHHHHHHHc--CCEEEecCC
Confidence            641     1123567888888888888764      2335678888888888887742  222221112  344667766


Q ss_pred             C
Q 020161          310 P  310 (330)
Q Consensus       310 ~  310 (330)
                      +
T Consensus       341 ~  341 (362)
T 2ra8_A          341 Q  341 (362)
T ss_dssp             C
T ss_pred             c
Confidence            5

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.60  E-value=4.6e-06  Score=73.22  Aligned_cols=261  Identities=18%  Similarity=0.216  Sum_probs=163.1

Q ss_pred             CCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC-CCCCCcccE
Q 020161           45 PTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD-VSIFKKLSV  122 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~  122 (330)
                      ..+|+.+.+.. +++.++.. |.+|.+|+.+.+..+ ++.+   .-.+|..+ +|+.+.+.. .++.+.. .....+|+.
T Consensus        45 ~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~I---g~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~~L~~  117 (379)
T 4h09_A           45 RDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSI---GDGAFADT-KLQSYTGME-RVKKFGDYVFQGTDLDD  117 (379)
T ss_dssp             GGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEE---CTTTTTTC-CCCEEEECT-TCCEECTTTTTTCCCSE
T ss_pred             ccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEe---chhhhcCC-CCceEECCc-eeeEeccceeccCCccc
Confidence            46788888864 46777664 888899999998754 4443   22345555 677776654 2444433 222347888


Q ss_pred             EEccCCCCcCccccccccCCCcEEEccCCCC-CCcccccCCCCccEEEcCCcccc--------------ccccccCCCCC
Q 020161          123 FDVSFNEITSSHGLSNVTDTLKELYVSKNEV-PKMEEIEHFHDLQILEFGSNRLR--------------VMENLQNLTNL  187 (330)
Q Consensus       123 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~~--------------~~~~l~~~~~L  187 (330)
                      +.+..+ ...+....+....+..+.+..+.. -+...+..+..++.+.+......              ....+..+..+
T Consensus       118 i~lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (379)
T 4h09_A          118 FEFPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG  196 (379)
T ss_dssp             EECCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred             ccCCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence            877654 222332233334555555544321 11245667777777777654321              11223445556


Q ss_pred             cEEECcCCC--ccccccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCC
Q 020161          188 QELWLGRNR--IKVVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNK  261 (330)
Q Consensus       188 ~~L~l~~~~--i~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~  261 (330)
                      ..+.+....  +....+..+..++.+.+..+ ++..  ..+..|..|+.+.+..+ ++.+  ..+..+.+|+.+.+..+ 
T Consensus       197 ~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-  273 (379)
T 4h09_A          197 TEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-  273 (379)
T ss_dssp             SEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-
T ss_pred             cccccccceeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-
Confidence            666655432  22336677788888888654 2222  45678899999988654 5554  35778889999999654 


Q ss_pred             CCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcccccccccc
Q 020161          262 LTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLFCYP  320 (330)
Q Consensus       262 ~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~~~~  320 (330)
                      ++.+  ..+..|++|+.+.+.++.++.++   ..++.+|.+|+.+.+..+ ++.+...+|.
T Consensus       274 i~~i~~~aF~~c~~L~~i~l~~~~i~~I~---~~aF~~c~~L~~i~lp~~-l~~I~~~aF~  330 (379)
T 4h09_A          274 VKTVPYLLCSGCSNLTKVVMDNSAIETLE---PRVFMDCVKLSSVTLPTA-LKTIQVYAFK  330 (379)
T ss_dssp             CSEECTTTTTTCTTCCEEEECCTTCCEEC---TTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             ceeccccccccccccccccccccccceeh---hhhhcCCCCCCEEEcCcc-ccEEHHHHhh
Confidence            5444  56889999999999999888776   467899999999998644 5555444443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.56  E-value=9.6e-08  Score=83.16  Aligned_cols=166  Identities=16%  Similarity=0.159  Sum_probs=92.0

Q ss_pred             CCCCcccEEEccCCCCc----------CccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccc--cccc-
Q 020161          115 SIFKKLSVFDVSFNEIT----------SSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV--MENL-  181 (330)
Q Consensus       115 ~~~~~L~~L~l~~~~~~----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~l-  181 (330)
                      ..+++|+.|.+......          .+......+++|+.|.+.++.-..+..+ ..++|+.|++..+.+..  ...+ 
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKK-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSC-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceeccc-cCCCCcEEEEecCCCChHHHHHHH
Confidence            34567777777554221          1112223367788888777631122223 26777888877766531  1222 


Q ss_pred             -cCCCCCcEEECcC--CC------cccc----ccCCCCcccEEECCCCccccc-----cccccccccceEEccCCCCCCC
Q 020161          182 -QNLTNLQELWLGR--NR------IKVV----NLCGLKCIKKISLQSNRLTSM-----KGFEECIALEELYLSHNGISKM  243 (330)
Q Consensus       182 -~~~~~L~~L~l~~--~~------i~~~----~~~~~~~L~~L~l~~~~l~~~-----~~~~~~~~L~~l~l~~~~~~~~  243 (330)
                       ..+++|+.|+++.  +.      +...    ....+++|+.|++.+|.++..     .....++.|+.|+++.|.+++.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence             2567777777642  11      1111    112467788888877766542     1113467788888877777652


Q ss_pred             ------cCCCCCCCCCEEEcCCCCCCCc--ccccc-CCCCCeEeCCCCC
Q 020161          244 ------EGLSTLVNLHVLDVSSNKLTLV--DDIQN-LSRLEDLWLNDNQ  283 (330)
Q Consensus       244 ------~~~~~~~~L~~L~l~~n~~~~~--~~~~~-~~~L~~L~l~~n~  283 (330)
                            ..+..+++|+.|++++|.+++.  ..+.. +  ...++++.++
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence                  2334567788888887777654  22222 2  3456777665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.50  E-value=2.1e-08  Score=77.19  Aligned_cols=98  Identities=8%  Similarity=0.135  Sum_probs=60.3

Q ss_pred             cccceEEccCCCCCC--CcCCCCCCCCCEEEcCCCC-CCCc--ccccc----CCCCCeEeCCCCC-CCchHHHHHHHhcc
Q 020161          228 IALEELYLSHNGISK--MEGLSTLVNLHVLDVSSNK-LTLV--DDIQN----LSRLEDLWLNDNQ-IESLESIVEAVAGS  297 (330)
Q Consensus       228 ~~L~~l~l~~~~~~~--~~~~~~~~~L~~L~l~~n~-~~~~--~~~~~----~~~L~~L~l~~n~-l~~~~~~~~~~~~~  297 (330)
                      ..|+.|++++|.+++  +..+.++++|++|++++|. +++.  ..+..    +++|++|++++|. |++  ..+ ..+.+
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD--~Gl-~~L~~  137 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD--KGI-IALHH  137 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH--HHH-HHGGG
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH--HHH-HHHhc
Confidence            456777777777654  3556677778888887774 6654  33433    3467888888875 664  222 33456


Q ss_pred             ccccchhhccCCC-ccccc-cccccccCCCCCC
Q 020161          298 RETLTTIYLENNP-CKIFK-LFCYPQTNFPKYT  328 (330)
Q Consensus       298 ~~~L~~l~l~~n~-~~~~~-~~~~~~~~~p~~~  328 (330)
                      |++|+.|++++|+ +++.. .....+.++|..+
T Consensus       138 ~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~  170 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE  170 (176)
T ss_dssp             CTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred             CCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence            7888888888877 33322 2444555666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.46  E-value=2.4e-07  Score=76.70  Aligned_cols=81  Identities=26%  Similarity=0.456  Sum_probs=64.2

Q ss_pred             ccccccceEEccCCCCCCCcCCC----CCCCCCEEEcCCCCCCCccccccCC--CCCeEeCCCCCCCc----hHHHHHHH
Q 020161          225 EECIALEELYLSHNGISKMEGLS----TLVNLHVLDVSSNKLTLVDDIQNLS--RLEDLWLNDNQIES----LESIVEAV  294 (330)
Q Consensus       225 ~~~~~L~~l~l~~~~~~~~~~~~----~~~~L~~L~l~~n~~~~~~~~~~~~--~L~~L~l~~n~l~~----~~~~~~~~  294 (330)
                      ..++.|+.|++++|.+++++.+.    .+++|+.|+|++|+++++..+..++  +|++|++++|++..    .+.....+
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            45788999999999998876544    6889999999999999885555555  89999999999874    23445567


Q ss_pred             hccccccchhh
Q 020161          295 AGSRETLTTIY  305 (330)
Q Consensus       295 ~~~~~~L~~l~  305 (330)
                      +..+|+|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            88889999865

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.31  E-value=2e-07  Score=71.82  Aligned_cols=97  Identities=24%  Similarity=0.281  Sum_probs=65.8

Q ss_pred             cccEEECCCCccccc--cccccccccceEEccCCC-CCC--CcCCCCC----CCCCEEEcCCCC-CCCc--cccccCCCC
Q 020161          207 CIKKISLQSNRLTSM--KGFEECIALEELYLSHNG-ISK--MEGLSTL----VNLHVLDVSSNK-LTLV--DDIQNLSRL  274 (330)
Q Consensus       207 ~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~-~~~--~~~~~~~----~~L~~L~l~~n~-~~~~--~~~~~~~~L  274 (330)
                      .|+.|+++++.++..  ..+..|+.|+.|++++|. +++  +..+..+    ++|++|++++|. +|+.  ..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            466666666665543  345678888888888885 554  2334443    479999999984 8865  567789999


Q ss_pred             CeEeCCCCC-CCchHHHHHHHhccccccch
Q 020161          275 EDLWLNDNQ-IESLESIVEAVAGSRETLTT  303 (330)
Q Consensus       275 ~~L~l~~n~-l~~~~~~~~~~~~~~~~L~~  303 (330)
                      +.|++++|+ +++.+-....+...+|+++.
T Consensus       142 ~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V  171 (176)
T 3e4g_A          142 KYLFLSDLPGVKEKEKIVQAFKTSLPSLEL  171 (176)
T ss_dssp             CEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred             CEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence            999999997 66543334445556676653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.94  E-value=8.9e-06  Score=67.30  Aligned_cols=76  Identities=21%  Similarity=0.220  Sum_probs=57.9

Q ss_pred             CCCCcccEEECCCCcccccccc----ccccccceEEccCCCCCCCcCCCCCC--CCCEEEcCCCCCCCc---------cc
Q 020161          203 CGLKCIKKISLQSNRLTSMKGF----EECIALEELYLSHNGISKMEGLSTLV--NLHVLDVSSNKLTLV---------DD  267 (330)
Q Consensus       203 ~~~~~L~~L~l~~~~l~~~~~~----~~~~~L~~l~l~~~~~~~~~~~~~~~--~L~~L~l~~n~~~~~---------~~  267 (330)
                      ..+++|+.|++++|.+++.+.+    ..+++|+.|++++|.++++..+..+.  +|++|++++|.+.+.         ..
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3467788888888888876433    47889999999999988865444433  899999999998752         24


Q ss_pred             cccCCCCCeEe
Q 020161          268 IQNLSRLEDLW  278 (330)
Q Consensus       268 ~~~~~~L~~L~  278 (330)
                      +..+|+|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            67789998877

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.93  E-value=6.5e-06  Score=64.55  Aligned_cols=104  Identities=17%  Similarity=0.176  Sum_probs=63.2

Q ss_pred             cCCCCCcEEECcCC-Ccccc-------ccCCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC----
Q 020161          182 QNLTNLQELWLGRN-RIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM----  243 (330)
Q Consensus       182 ~~~~~L~~L~l~~~-~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~----  243 (330)
                      .+.+.|++|+++++ .+.+.       .+.....|+.|++++|.++..      ..+.....|+.|+++.|.|++.    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            45567888888774 66654       355566777777777777654      1244556677777777776652    


Q ss_pred             --cCCCCCCCCCEEEcCCC---CCCCc------cccccCCCCCeEeCCCCCCC
Q 020161          244 --EGLSTLVNLHVLDVSSN---KLTLV------DDIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       244 --~~~~~~~~L~~L~l~~n---~~~~~------~~~~~~~~L~~L~l~~n~l~  285 (330)
                        +.+.....|++|+++++   .+...      ..+...+.|..|+++.|.+.
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence              34555666777777654   23321      33455566666666665543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.78  E-value=2.8e-05  Score=60.99  Aligned_cols=111  Identities=17%  Similarity=0.153  Sum_probs=84.3

Q ss_pred             cCCCCcccEEECCCC-ccccc------cccccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc---
Q 020161          202 LCGLKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV---  265 (330)
Q Consensus       202 ~~~~~~L~~L~l~~~-~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~---  265 (330)
                      ....+.|+.|+++++ .+...      ..+.....|+.|++++|.+++.      +.+.....|+.|+|+.|.|++.   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            455678999999985 77654      3466778999999999999863      3456678999999999999866   


Q ss_pred             ---cccccCCCCCeEeCCCC---CCCch-HHHHHHHhccccccchhhccCCCcc
Q 020161          266 ---DDIQNLSRLEDLWLNDN---QIESL-ESIVEAVAGSRETLTTIYLENNPCK  312 (330)
Q Consensus       266 ---~~~~~~~~L~~L~l~~n---~l~~~-~~~~~~~~~~~~~L~~l~l~~n~~~  312 (330)
                         ..+...+.|++|+|++|   .+.+- ...+..++...++|+.|+++.|...
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence               45666778999999876   44532 1245667788899999999887754

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.56  E-value=0.00017  Score=52.72  Aligned_cols=57  Identities=33%  Similarity=0.401  Sum_probs=49.1

Q ss_pred             CcEEeccCcccc--cCCCCCCCCCcCEEecCCCCCCChhhh-hhcCCCCCEEeCCCCcCCc
Q 020161           26 NTVLDLTSFQLH--DLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD   83 (330)
Q Consensus        26 l~~l~l~~~~l~--~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~l~~L~~L~l~~~~~~~   83 (330)
                      ..+++++++.++  .+|. .+++++++|+|++|.|+.++.. |..+++|+.|++++|.+.-
T Consensus        10 ~~~v~Cs~~~L~~~~vP~-~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           10 GTLVDCGRRGLTWASLPT-AFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TTEEECCSSCCCTTTSCS-CCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CCEEEeCCCCCccccCCC-CCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            357899999998  8885 5788999999999999999875 7889999999999997764

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.83  E-value=0.00049  Score=50.23  Aligned_cols=54  Identities=19%  Similarity=0.206  Sum_probs=42.4

Q ss_pred             ceEEccCCCCC--CCcCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCC
Q 020161          231 EELYLSHNGIS--KMEGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       231 ~~l~l~~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~  285 (330)
                      ..++.++++++  .++.- -.+++++|+|++|+++.+  ..+..+++|+.|+|.+|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~-lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTA-FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSC-CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCC-CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            36777888877  66621 224799999999999988  56788889999999999887

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	330
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-22
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-19
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-17
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	8e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	8e-14
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-11
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-09
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-12
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-10
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-08
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	9e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-10
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	8e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-06
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	9e-10
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-09
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	4e-07
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	5e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-06
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	5e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-05
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 92.4 bits (228), Expect = 9e-22
 Identities = 46/192 (23%), Positives = 96/192 (50%), Gaps = 2/192 (1%)

Query: 92  WDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKN 151
              L  LE LI  +N++  I  + I   L    ++ N++     L+++T  L +L ++ N
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANN 251

Query: 152 EVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGLKCIKK 210
           ++  +  +     L  L+ G+N++  +  L  LT L  L L  N+++ +  +  LK +  
Sbjct: 252 QISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 211 ISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQN 270
           ++L  N ++ +        L+ L+ ++N +S +  L+ L N++ L    N+++ +  + N
Sbjct: 312 LTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLAN 371

Query: 271 LSRLEDLWLNDN 282
           L+R+  L LND 
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 86.6 bits (213), Expect = 1e-19
 Identities = 53/205 (25%), Positives = 93/205 (45%), Gaps = 7/205 (3%)

Query: 106 NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDL 165
           NK+  I  ++    L     + N+I+    L  +T  L EL ++ N++  +  +    +L
Sbjct: 185 NKVSDISVLAKLTNLESLIATNNQISDITPLGILT-NLDELSLNGNQLKDIGTLASLTNL 243

Query: 166 QILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGLKCIKKISLQSNRLTSMKGF 224
             L+  +N++  +  L  LT L EL LG N+I  +  L GL  +  + L  N+L  +   
Sbjct: 244 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPI 303

Query: 225 EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQI 284
                L  L L  N IS +  +S+L  L  L  ++NK++ V  + NL+ +  L    NQI
Sbjct: 304 SNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQI 363

Query: 285 ESLESIVEAVAGSRETLTTIYLENN 309
             L  +      +   +T + L + 
Sbjct: 364 SDLTPL-----ANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.5 bits (192), Expect = 7e-17
 Identities = 65/328 (19%), Positives = 126/328 (38%), Gaps = 49/328 (14%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKL------- 74
           DL   T L      +  +D VE+  NLT+++ + N+LT +   + +L+ L  +       
Sbjct: 42  DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQI 100

Query: 75  ----------SLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFD 124
                     +L    + +  I  I     L  L  L L  N +  I  +S    L    
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLS 160

Query: 125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNL 184
                       +  T       +S N+V  +  +    +L+ L   +N++  +  L  L
Sbjct: 161 FGNQVTDLKPLANLTTLERL--DISSNKVSDISVLAKLTNLESLIATNNQISDITPLGIL 218

Query: 185 TNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM 243
           TNL EL L  N++K +  L  L  +  + L +N+++++        L EL L  N IS +
Sbjct: 219 TNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNI 278

Query: 244 EGLSTLVN----------------------LHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
             L+ L                        L  L +  N ++ +  + +L++L+ L+  +
Sbjct: 279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFAN 338

Query: 282 NQIESLESIVEAVAGSRETLTTIYLENN 309
           N++  + S+      +   +  +   +N
Sbjct: 339 NKVSDVSSL-----ANLTNINWLSAGHN 361

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 4e-16
 Identities = 49/189 (25%), Positives = 87/189 (46%), Gaps = 8/189 (4%)

Query: 29  LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEP 88
           L  T+ Q+ D+  +   TNL EL L  N+L  + + ++ L+NL  L L  N I +     
Sbjct: 202 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISN----- 255

Query: 89  ISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV 148
           ++    L  L EL L  N++  I  ++    L+  +++ N++       +    L  L +
Sbjct: 256 LAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTL 314

Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGLKC 207
             N +  +  +     LQ L F +N++  + +L NLTN+  L  G N+I  +  L  L  
Sbjct: 315 YFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTR 374

Query: 208 IKKISLQSN 216
           I ++ L   
Sbjct: 375 ITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 1e-14
 Identities = 51/169 (30%), Positives = 86/169 (50%), Gaps = 7/169 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             L L   QL D+ ++   TNLT+LDL  N++++L   +S L+ L +L L  N I +   
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGANQISN--- 277

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
             IS    L  L  L L +N+L  I  +S  K L+   + FN I+    +S++T  L+ L
Sbjct: 278 --ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLT-KLQRL 334

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRN 195
           + + N+V  +  + +  ++  L  G N++  +  L NLT + +L L   
Sbjct: 335 FFANNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 1e-10
 Identities = 57/245 (23%), Positives = 109/245 (44%), Gaps = 7/245 (2%)

Query: 46  TNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD 105
               +  L    +T   S  + L  +  L   +  I    I+ +     L  L ++   +
Sbjct: 22  AEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKS--IDGVEY---LNNLTQINFSN 75

Query: 106 NKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDL 165
           N+L  I  +    KL    ++ N+I            L  L +  N++  ++ +++  +L
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 166 QILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFE 225
             LE  SN +  +  L  LT+LQ+L  G     +  L  L  ++++ + SN+++ +    
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 226 ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE 285
           +   LE L  ++N IS +  L  L NL  L ++ N+L  +  + +L+ L DL L +NQI 
Sbjct: 195 KLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQIS 254

Query: 286 SLESI 290
           +L  +
Sbjct: 255 NLAPL 259

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 5e-07
 Identities = 14/77 (18%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 183 NLTNLQELWLGRNRI-KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGIS 241
            L    +  LG+  +   V+   L  +  +      + S+ G E    L ++  S+N ++
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLT 79

Query: 242 KMEGLSTLVNLHVLDVS 258
            +  L  L  L  + ++
Sbjct: 80  DITPLKNLTKLVDILMN 96

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.5 bits (96), Expect = 8e-05
 Identities = 9/69 (13%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 222 KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
               E +      L    ++     + L  +  L      +  +D ++ L+ L  +  ++
Sbjct: 19  TALAEKMKT---VLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSN 75

Query: 282 NQIESLESI 290
           NQ+  +  +
Sbjct: 76  NQLTDITPL 84

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 4e-14
 Identities = 48/283 (16%), Positives = 100/283 (35%), Gaps = 24/283 (8%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
              V+  +   L  +   + P +   LDL  N++T +      +L NL  L L  N I  
Sbjct: 11  HLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTD 141
            +    +    L  LE L L  N+L ++P+      ++L V +    ++  S        
Sbjct: 70  ISPGAFAP---LVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

Query: 142 TLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKV 199
            + EL  +  +   +E    +    L  +      +  +       +L EL L  N+I  
Sbjct: 127 IVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-GLPPSLTELHLDGNKITK 185

Query: 200 VNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYL------SHNGISKMEGLSTLVNLH 253
           V+   LK +  ++       S+   +        +L      ++  +    GL+    + 
Sbjct: 186 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 245

Query: 254 VLDVSSNKLTLVDD--------IQNLSRLEDLWLNDNQIESLE 288
           V+ + +N ++ +              +    + L  N ++  E
Sbjct: 246 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 67.4 bits (163), Expect = 8e-14
 Identities = 37/214 (17%), Positives = 77/214 (35%), Gaps = 5/214 (2%)

Query: 68  LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127
           L+N  K++  ++ + D     +++ D L G+  L      +  I  V     L   ++  
Sbjct: 18  LANAIKIAAGKSNVTD----TVTQAD-LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD 72

Query: 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
           N+IT    L N+T   +                      +    +    V          
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS 247
                      +  L GL  ++ +S+ + +++ +        L  L    N IS +  L+
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLA 192

Query: 248 TLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
           +L NL  + + +N+++ V  + N S L  + L +
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 60.0 bits (144), Expect = 3e-11
 Identities = 43/231 (18%), Positives = 97/231 (41%), Gaps = 7/231 (3%)

Query: 79  NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSN 138
           ++    AI  I    ALA   ++    + +      +    ++        +T+  G+  
Sbjct: 2   SITQPTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQY 61

Query: 139 VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNR-I 197
           + + L  L +  N++  +  +++   +  LE   N L+ +  +  L +++ L L   +  
Sbjct: 62  LNN-LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQIT 120

Query: 198 KVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDV 257
            V  L GL  ++ + L  N++T++        L+ L + +  +S +  L+ L  L  L  
Sbjct: 121 DVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKA 180

Query: 258 SSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLEN 308
             NK++ +  + +L  L ++ L +NQI  +  +      +   L  + L N
Sbjct: 181 DDNKISDISPLASLPNLIEVHLKNNQISDVSPL-----ANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 54.7 bits (130), Expect = 2e-09
 Identities = 41/210 (19%), Positives = 94/210 (44%), Gaps = 8/210 (3%)

Query: 29  LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEP 88
           +      + D  +      +T L      +T+++  + +L+NL  L L+ N      I  
Sbjct: 24  IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDN-----QITD 77

Query: 89  ISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV 148
           ++    L  + EL L  N L  +  ++  + +   D++  +IT    L+ +++  + LY+
Sbjct: 78  LAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL-QVLYL 136

Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VVNLCGLKC 207
             N++  +  +    +LQ L  G+ ++  +  L NL+ L  L    N+I  +  L  L  
Sbjct: 137 DLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPN 196

Query: 208 IKKISLQSNRLTSMKGFEECIALEELYLSH 237
           + ++ L++N+++ +        L  + L++
Sbjct: 197 LIEVHLKNNQISDVSPLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 2e-04
 Identities = 34/193 (17%), Positives = 70/193 (36%), Gaps = 9/193 (4%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           DL   T L      +  ++ V++  NL  L+L  N++T L    +     +       L 
Sbjct: 39  DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLK 98

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
           + +AI  +     L      I     L  + ++ +         + + +     L  +  
Sbjct: 99  NVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYL-- 156

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK-VV 200
                 +   +V  +  + +   L  L+   N++  +  L +L NL E+ L  N+I  V 
Sbjct: 157 -----SIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS 211

Query: 201 NLCGLKCIKKISL 213
            L     +  ++L
Sbjct: 212 PLANTSNLFIVTL 224

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 63.9 bits (154), Expect = 1e-12
 Identities = 29/192 (15%), Positives = 74/192 (38%), Gaps = 5/192 (2%)

Query: 68  LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127
            +   K +L++  + D     +++ + L  ++++I  ++ +  +  +     ++   ++ 
Sbjct: 23  FAETIKDNLKKKSVTD----AVTQNE-LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNG 77

Query: 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
           N++T    L+N+ +                  +      +    +    +   +      
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 188 QELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLS 247
                      +  L  L  +  +SL+ N+++ +        L+ LYLS N IS +  L+
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALA 197

Query: 248 TLVNLHVLDVSS 259
            L NL VL++ S
Sbjct: 198 GLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 58.5 bits (140), Expect = 1e-10
 Identities = 34/196 (17%), Positives = 79/196 (40%), Gaps = 5/196 (2%)

Query: 88  PISRWDALAGLEELI---LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLK 144
           PI +  +     E I   L+   +      +    +     + ++I S  G+  + + + 
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPN-VT 71

Query: 145 ELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM-ENLQNLTNLQELWLGRNRIKVVNLC 203
           +L+++ N++  ++ + +  +L  L    N+++ +                     +  L 
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLV 131

Query: 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLT 263
            L  ++ + L +N++T +        L+ L L  N IS +  L+ L  L  L +S N ++
Sbjct: 132 HLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHIS 191

Query: 264 LVDDIQNLSRLEDLWL 279
            +  +  L  L+ L L
Sbjct: 192 DLRALAGLKNLDVLEL 207

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 1e-08
 Identities = 38/175 (21%), Positives = 86/175 (49%), Gaps = 2/175 (1%)

Query: 117 FKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR 176
           F +    ++    +T +   + + +++ ++  + +++  ++ I++  ++  L    N+L 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQNEL-NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT 81

Query: 177 VMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSM-KGFEECIALEELYL 235
            ++ L NL NL  L+L  N++K ++        K     +   S   G      LE LYL
Sbjct: 82  DIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYL 141

Query: 236 SHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESI 290
            +N I+ +  LS L  L  L +  N+++ +  +  L++L++L+L+ N I  L ++
Sbjct: 142 GNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRAL 196

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 14/69 (20%), Positives = 30/69 (43%), Gaps = 3/69 (4%)

Query: 216 NRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLE 275
            ++ S   F E I      L    ++     + L ++  +  +++ +  V  IQ L  + 
Sbjct: 15  KQIFSDDAFAETIKDN---LKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVT 71

Query: 276 DLWLNDNQI 284
            L+LN N++
Sbjct: 72  KLFLNGNKL 80

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 1e-04
 Identities = 25/166 (15%), Positives = 53/166 (31%), Gaps = 7/166 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAI 86
             +   +  +  +  +++  N+T+L L  N+LT        +  L  L     L  D   
Sbjct: 49  DQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLT-------DIKPLANLKNLGWLFLDENK 101

Query: 87  EPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL 146
                        + +  ++  +   +  +           N   +   + +    L  L
Sbjct: 102 VKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTL 161

Query: 147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWL 192
            +  N++  +  +     LQ L    N +  +  L  L NL  L L
Sbjct: 162 SLEDNQISDIVPLAGLTKLQNLYLSKNHISDLRALAGLKNLDVLEL 207

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.0 bits (129), Expect = 8e-10
 Identities = 27/110 (24%), Positives = 53/110 (48%), Gaps = 5/110 (4%)

Query: 166 QILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKG 223
           ++L      L V+ +L+ L  +  L L  NR++ +   L  L+C++ +    N L ++ G
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 224 FEECIALEELYLSHNGISK---MEGLSTLVNLHVLDVSSNKLTLVDDIQN 270
                 L+EL L +N + +   ++ L +   L +L++  N L   + IQ 
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQE 110

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.1 bits (106), Expect = 8e-07
 Identities = 30/112 (26%), Positives = 51/112 (45%), Gaps = 8/112 (7%)

Query: 28  VLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIE 87
           VL L    L  L  +E    +T LDL+ NRL +L   ++ L  L+ L    N     A+E
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-----ALE 56

Query: 88  PISRWDALAGLEELILRDNKLMKIPDVSIF---KKLSVFDVSFNEITSSHGL 136
            +     L  L+EL+L +N+L +   +       +L + ++  N +    G+
Sbjct: 57  NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 4e-06
 Identities = 21/100 (21%), Positives = 40/100 (40%), Gaps = 3/100 (3%)

Query: 101 LILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIE 160
           L L    L  +  +     ++  D+S N + +          L+ L  S N +  ++ + 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 161 HFHDLQILEFGSNRLR---VMENLQNLTNLQELWLGRNRI 197
           +   LQ L   +NRL+    ++ L +   L  L L  N +
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 2e-05
 Identities = 25/108 (23%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV-MENLQNLTNLQELWLGRNRIKVV-N 201
           + L+++  ++  +  +E    +  L+   NRLR     L  L  L+ L    N ++ V  
Sbjct: 1   RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG 60

Query: 202 LCGLKCIKKISLQSNRLTSMKGFEE---CIALEELYLSHNGISKMEGL 246
           +  L  ++++ L +NRL      +    C  L  L L  N + + EG+
Sbjct: 61  VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 21/102 (20%), Positives = 40/102 (39%), Gaps = 25/102 (24%)

Query: 233 LYLSHNGISKMEGLSTLVNLHVLDVSSNKLT-LVDDIQNLSRL----------------- 274
           L+L+H  ++ +  L  L+ +  LD+S N+L  L   +  L  L                 
Sbjct: 3   LHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVA 62

Query: 275 -----EDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPC 311
                ++L L +N+++   +I      S   L  + L+ N  
Sbjct: 63  NLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGNSL 102

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 55.4 bits (132), Expect = 9e-10
 Identities = 49/189 (25%), Positives = 89/189 (47%), Gaps = 7/189 (3%)

Query: 68  LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127
           L+   K  L +  + D     +S+ D L  +  L      +  I  V     L+  + S 
Sbjct: 17  LAEKMKTVLGKTNVTD----TVSQTD-LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSN 71

Query: 128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
           N++T    L N+T  +    ++ N++  +  + +  +L  L   +N++  ++ L+NLTNL
Sbjct: 72  NQLTDITPLKNLTKLVDI-LMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 130

Query: 188 QELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGL 246
             L L  N I  +  L GL  +++++  SN++T +K       LE L +S N +S +  L
Sbjct: 131 NRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVL 190

Query: 247 STLVNLHVL 255
           + L NL  L
Sbjct: 191 AKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 53.5 bits (127), Expect = 4e-09
 Identities = 45/196 (22%), Positives = 91/196 (46%), Gaps = 2/196 (1%)

Query: 83  DAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDT 142
           D  I  I    ALA   + +L    +      +   +++        I S  G+  + + 
Sbjct: 5   DTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNN- 63

Query: 143 LKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNL 202
           L ++  S N++  +  +++   L  +   +N++  +  L NLTNL  L L  N+I  ++ 
Sbjct: 64  LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 123

Query: 203 CGLKC-IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNK 261
                 + ++ L SN ++ +       +L++L  S N ++ ++ L+ L  L  LD+SSNK
Sbjct: 124 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNK 183

Query: 262 LTLVDDIQNLSRLEDL 277
           ++ +  +  L+ LE L
Sbjct: 184 VSDISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.4 bits (111), Expect = 4e-07
 Identities = 39/181 (21%), Positives = 83/181 (45%), Gaps = 3/181 (1%)

Query: 111 IPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEF 170
             D +   +     +    +T +   +++ D +  L   +  +  ++ +E+ ++L  + F
Sbjct: 12  FTD-TALAEKMKTVLGKTNVTDTVSQTDL-DQVTTLQADRLGIKSIDGVEYLNNLTQINF 69

Query: 171 GSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIA- 229
            +N+L  +  L+NLT L ++ +  N+I  +               N   +     + +  
Sbjct: 70  SNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTN 129

Query: 230 LEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLES 289
           L  L LS N IS +  LS L +L  L+ SSN++T +  + NL+ LE L ++ N++  +  
Sbjct: 130 LNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISV 189

Query: 290 I 290
           +
Sbjct: 190 L 190

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 7/170 (4%)

Query: 29  LDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEP 88
             L    + D  S      +T L      + S+D  + +L+NL +++   N + D     
Sbjct: 23  TVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITPLK 81

Query: 89  ISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYV 148
                        IL +N  +                 FN   +          L  L +
Sbjct: 82  NLTKL------VDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLEL 135

Query: 149 SKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIK 198
           S N +  +  +     LQ L F SN++  ++ L NLT L+ L +  N++ 
Sbjct: 136 SSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS 185

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 33/169 (19%), Positives = 68/169 (40%), Gaps = 8/169 (4%)

Query: 23  DLSN-TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
           DL   T L      +  +D VE+  NLT+++ + N       +++ ++ LK L+   +++
Sbjct: 38  DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNN-------QLTDITPLKNLTKLVDIL 90

Query: 82  DDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTD 141
            +          A       +   N  +   D              +   S     +   
Sbjct: 91  MNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLT 150

Query: 142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQEL 190
           +L++L  S N+V  ++ + +   L+ L+  SN++  +  L  LTNL+ L
Sbjct: 151 SLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 199

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 49.4 bits (116), Expect = 2e-07
 Identities = 54/329 (16%), Positives = 103/329 (31%), Gaps = 38/329 (11%)

Query: 9   PSAEATNPDQAVE-----IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS 63
           P       + AV      +D     L+L +  L  L   E P +L  L  + N LT L  
Sbjct: 18  PPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP--ELPPHLESLVASCNSLTELPE 75

Query: 64  RISHLSNLKKL------------SLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKI 111
               L +L                L    + +  +E +      + L+ + + +N L K+
Sbjct: 76  LPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL 135

Query: 112 PDVSIFKKLS-VFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEF 170
           PD+    +     +    E+     L  +T    +    K        +E       +  
Sbjct: 136 PDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILE 195

Query: 171 GSNRLRVMENLQNLTNLQELWLGRNRIKV---------VNLCGLKCIKKISLQSNRLTSM 221
               L+ +  L  +     L      +             L  L  + +     +   ++
Sbjct: 196 ELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENI 255

Query: 222 KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLND 281
                 +     YL+ +            +L  L+VS+NKL  +       RLE L  + 
Sbjct: 256 FSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA--LPPRLERLIASF 313

Query: 282 NQIESLESIVEAVAGSRETLTTIYLENNP 310
           N +  +  +        + L  +++E NP
Sbjct: 314 NHLAEVPELP-------QNLKQLHVEYNP 335

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 2e-06
 Identities = 18/88 (20%), Positives = 35/88 (39%), Gaps = 11/88 (12%)

Query: 221 MKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLN 280
               +   +LEEL +S+N + ++  L     L  L  S N L  V ++     L+ L + 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAEVPEL--PQNLKQLHVE 332

Query: 281 DNQIESLESIVEAVAGSRETLTTIYLEN 308
            N +     I        E++  + + +
Sbjct: 333 YNPLREFPDIP-------ESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 10/71 (14%)

Query: 44  FPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL 103
            P +L EL+++ N+L  L    +    L++L    N + +         +    L++L +
Sbjct: 282 LPPSLEELNVSNNKLIELP---ALPPRLERLIASFNHLAEVP-------ELPQNLKQLHV 331

Query: 104 RDNKLMKIPDV 114
             N L + PD+
Sbjct: 332 EYNPLREFPDI 342

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 22/120 (18%), Positives = 38/120 (31%), Gaps = 27/120 (22%)

Query: 161 HFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTS 220
                 +    ++   +        +L+EL +  N++  +                    
Sbjct: 260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP------------------- 300

Query: 221 MKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLN 280
                    LE L  S N ++++  L    NL  L V  N L    DI     +EDL +N
Sbjct: 301 ----ALPPRLERLIASFNHLAEVPELPQ--NLKQLHVEYNPLREFPDI--PESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 3e-04
 Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 6/77 (7%)

Query: 92  WDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKN 151
            D    LEEL + +NKL+++P  ++  +L     SFN +     +  +   LK+L+V  N
Sbjct: 280 CDLPPSLEELNVSNNKLIELP--ALPPRLERLIASFNHLAE---VPELPQNLKQLHVEYN 334

Query: 152 EVPKM-EEIEHFHDLQI 167
            + +  +  E   DL++
Sbjct: 335 PLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 6e-04
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLI 81
             L++++ +L +L +   P  L  L  + N L  +        NLK+L +  N +
Sbjct: 287 EELNVSNNKLIELPA--LPPRLERLIASFNHLAEVP---ELPQNLKQLHVEYNPL 336

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 2/46 (4%)

Query: 27  TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLK 72
             L  +   L ++   E P NL +L +  N L         + +L+
Sbjct: 307 ERLIASFNHLAEVP--ELPQNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 1e-06
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 213 LQSNRLTSMKGFEECIALEELYLSHNGISKMEGL-STLVNLHVLDVSSNKLTLVDDIQNL 271
           L +  +     +   +   EL L    I  +E L +TL     +D S N++  +D    L
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 62

Query: 272 SRLEDLWLNDNQIES 286
            RL+ L +N+N+I  
Sbjct: 63  RRLKTLLVNNNRICR 77

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (87), Expect = 5e-04
 Identities = 20/157 (12%), Positives = 51/157 (32%), Gaps = 15/157 (9%)

Query: 31  LTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPIS 90
           LT+  +             ELDL   ++  +++  + L     +    N I       + 
Sbjct: 3   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-----KLD 57

Query: 91  RWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSK 150
            +  L  L+ L++ +N++ +I +        + ++      +++ L  +        +  
Sbjct: 58  GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELIL----TNNSLVELG------DLDP 107

Query: 151 NEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNL 187
               K           +      RL V+  +  +  L
Sbjct: 108 LASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-06
 Identities = 34/240 (14%), Positives = 67/240 (27%), Gaps = 15/240 (6%)

Query: 25  SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKLSLRQNLIDD 83
           SN V      ++ ++ S + P N  EL     +L  +     S   +L+K+ + QN + +
Sbjct: 9   SNRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 67

Query: 84  AAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTL 143
                +           +   +N L   P+         + +  N               
Sbjct: 68  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHL--------- 118

Query: 144 KELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLC 203
               V K    +   ++   ++ I     N    +     +  L +  +        N  
Sbjct: 119 --PDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGT 176

Query: 204 GLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNK 261
            L  +      +        F        L +S   I  +   GL  L  L      + K
Sbjct: 177 QLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 4e-06
 Identities = 44/260 (16%), Positives = 80/260 (30%), Gaps = 13/260 (5%)

Query: 16  PDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISHLSNLKKL 74
           P   V  +            L  +     P     + L  NR++ + +       NL  L
Sbjct: 3   PGACVCYNEPKVTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTIL 61

Query: 75  SLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVS-FNEITSS 133
            L  N++        +    L  L+       + +         +L    +         
Sbjct: 62  WLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELG 121

Query: 134 HGLSNVTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQE 189
            GL      L+ LY+  N +  +  +      +L  L    NR+        + L +L  
Sbjct: 122 PGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDR 181

Query: 190 LWLGRNR---IKVVNLCGLKCIKKISLQSNRLT--SMKGFEECIALEELYLSHNGISKME 244
           L L +NR   +       L  +  + L +N L+    +      AL+ L L+ N      
Sbjct: 182 LLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC 241

Query: 245 GLSTLV-NLHVLDVSSNKLT 263
               L   L     SS+++ 
Sbjct: 242 RARPLWAWLQKFRGSSSEVP 261

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (105), Expect = 6e-06
 Identities = 24/95 (25%), Positives = 39/95 (41%), Gaps = 14/95 (14%)

Query: 224 FEECIALEELYLSHNGISK------MEGLSTLVNLHVLDVSSNKLT------LVDDI-QN 270
            +    L  L+L+   +S          L    +L  LD+S+N L       LV+ + Q 
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 271 LSRLEDLWLNDNQI-ESLESIVEAVAGSRETLTTI 304
              LE L L D    E +E  ++A+   + +L  I
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (101), Expect = 2e-05
 Identities = 16/78 (20%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 47  NLTELDLTANRLTSLDSR--ISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLEELIL 103
           ++  LD+    L+       +  L   + + L    + +A  + IS        L EL L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 104 RDNKLMKIPDVSIFKKLS 121
           R N+L  +    + + L 
Sbjct: 63  RSNELGDVGVHCVLQGLQ 80

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 4e-04
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 10/93 (10%)

Query: 27  TVLDLTSFQLHDLDSVEFPT---NLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQ 78
             LD+   +L D    E          + L    LT      + S +     L +L+LR 
Sbjct: 5   QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRS 64

Query: 79  NLIDDAAIEPISRW--DALAGLEELILRDNKLM 109
           N + D  +  + +        +++L L++  L 
Sbjct: 65  NELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 5e-04
 Identities = 11/65 (16%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 250 VNLHVLDVSSNKLT---LVDDIQNLSRLEDLWLNDNQI--ESLESIVEAVAGSRETLTTI 304
           +++  LD+   +L+     + +  L + + + L+D  +     + I  A+  +   L  +
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNP-ALAEL 60

Query: 305 YLENN 309
            L +N
Sbjct: 61  NLRSN 65

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 13/67 (19%), Positives = 27/67 (40%), Gaps = 8/67 (11%)

Query: 251 NLHVLDVSSNKLT------LVDDIQNLSRLEDLWLNDNQI--ESLESIVEAVAGSRETLT 302
            L VL ++   ++      L   +     L +L L++N +    +  +VE+V      L 
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 303 TIYLENN 309
            + L + 
Sbjct: 430 QLVLYDI 436

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 7/73 (9%)

Query: 43  EFPTNLTELDLTANRLT-----SLDSRISHLSNLKKLSLRQNLIDDAAIEPISR--WDAL 95
           +  + L  L L    ++     SL + +    +L++L L  N + DA I  +        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 96  AGLEELILRDNKL 108
             LE+L+L D   
Sbjct: 426 CLLEQLVLYDIYW 438

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 43/259 (16%), Positives = 76/259 (29%), Gaps = 15/259 (5%)

Query: 40  DSVEFPTNLTELDLTANRLT---SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALA 96
           D+      +  LDL+   L     + S +++L  L  L +         I P        
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 97  GLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM 156
               +   +        +S  K L   D S+N ++ +   S  +                
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163

Query: 157 EEIEHFHDLQILEF----GSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKIS 212
              + +     L        NRL                     +   +   L    K +
Sbjct: 164 AIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 213 LQSNRLTSMKGFEECIAL-----EELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLT-L 264
            + +   +   F+            L L +N I     +GL+ L  LH L+VS N L   
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 265 VDDIQNLSRLEDLWLNDNQ 283
           +    NL R +     +N+
Sbjct: 284 IPQGGNLQRFDVSAYANNK 302

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 5e-05
 Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 22/219 (10%)

Query: 9   PSAEATNPDQAVEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSR-ISH 67
           P  E +     +E++      +LT+         + P + T L L+ N L +     +  
Sbjct: 2   PICEVSKVASHLEVNCDK--RNLTAL------PPDLPKDTTILHLSENLLYTFSLATLMP 53

Query: 68  LSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF 127
            + L +L+L     D A +  +     L  L  L L  N+L  +P +             
Sbjct: 54  YTRLTQLNL-----DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVS 108

Query: 128 NEITSS---HGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVM---ENL 181
               +S     L  + +  +              +            +N          L
Sbjct: 109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLL 168

Query: 182 QNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRL 218
             L NL  L L  N +  +     G   +    L  N  
Sbjct: 169 NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (95), Expect = 8e-05
 Identities = 33/225 (14%), Positives = 65/225 (28%), Gaps = 22/225 (9%)

Query: 88  PISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITS--SHGLSNVTDTLKE 145
           PI     +A   E+      L  +P   + K  ++  +S N + +     L   T  L +
Sbjct: 2   PICEVSKVASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYT-RLTQ 59

Query: 146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGL 205
           L + + E+ K++       L            ++   N      L         V     
Sbjct: 60  LNLDRAELTKLQVDGTLPVLGT----------LDLSHNQLQSLPLLGQTLPALTVLDVSF 109

Query: 206 KCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV 265
             +  + L + R             E   L       +   +  +    L  ++      
Sbjct: 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPG----LLTPTPKLEKLSLANNNLTELPA 165

Query: 266 DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNP 310
             +  L  L+ L L +N + ++             L   +L  NP
Sbjct: 166 GLLNGLENLDTLLLQENSLYTIPKG----FFGSHLLPFAFLHGNP 206

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.8 bits (92), Expect = 1e-04
 Identities = 21/146 (14%), Positives = 56/146 (38%), Gaps = 24/146 (16%)

Query: 169 EFGSNRLRVMEN-LQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKG-FE 225
           E    ++  ++  +    +  +  L    ++   +L        ++ +S+   +++   E
Sbjct: 3   ELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSSMAATLRIIEE 62

Query: 226 ECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIE 285
               L  L LS+N + +++ +S++                  +Q    L+ L L+ N+++
Sbjct: 63  NIPELLSLNLSNNRLYRLDDMSSI------------------VQKAPNLKILNLSGNELK 104

Query: 286 SLESIVEAVAGSRETLTTIYLENNPC 311
           S   + +      E L   +L+ N  
Sbjct: 105 SERELDKIKGLKLEEL---WLDGNSL 127

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 13/68 (19%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 47  NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRW-DALAGLEELILRD 105
           +L    +T     S+ + +    ++K++ L  N I   A   +S    +   LE     D
Sbjct: 9   SLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68

Query: 106 NKLMKIPD 113
               ++ D
Sbjct: 69  IFTGRVKD 76

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	330
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.93
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.87
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.87
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.86
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.82
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.82
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.81
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.8
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.74
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.65
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.61
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.59
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.56
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.56
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.54
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.49
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.46
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.17
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.25
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.24
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.18
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.08
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.88
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.54

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.97  E-value=6.1e-29  Score=218.52  Aligned_cols=281  Identities=23%  Similarity=0.391  Sum_probs=211.3

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      .++++|+++++.+.+++.+.++++|++|++++|.|+.+++ +.++++|++|++++|.+.+.     ..+..+++|+.+++
T Consensus        44 ~~l~~L~l~~~~I~~l~gl~~L~nL~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i-----~~l~~l~~L~~L~~  117 (384)
T d2omza2          44 DQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADI-----TPLANLTNLTGLTL  117 (384)
T ss_dssp             TTCCEEECCSSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC-----GGGTTCTTCCEEEC
T ss_pred             CCCCEEECCCCCCCCccccccCCCCCEEeCcCCcCCCCcc-ccCCcccccccccccccccc-----cccccccccccccc
Confidence            4789999999999998888889999999999999999876 89999999999999998764     23667899999999


Q ss_pred             cCCcCcCCCCCCCCCcccEEEccCCCCc------------------------------------------CccccccccC
Q 020161          104 RDNKLMKIPDVSIFKKLSVFDVSFNEIT------------------------------------------SSHGLSNVTD  141 (330)
Q Consensus       104 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~------------------------------------------~~~~~~~~~~  141 (330)
                      +++.++.++.......+.......+.+.                                          ........++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  197 (384)
T d2omza2         118 FNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLT  197 (384)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccccccccccccccccc
Confidence            9888775443222222222222211100                                          0011122256


Q ss_pred             CCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCcccc
Q 020161          142 TLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTS  220 (330)
Q Consensus       142 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~  220 (330)
                      +++.+++++|.+........+++|+.+++++|.++.++.+..++.|+.+++++|.+.+. .+..+++|+.++++++.+++
T Consensus       198 ~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~  277 (384)
T d2omza2         198 NLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN  277 (384)
T ss_dssp             TCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC
T ss_pred             ccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCC
Confidence            77788888887777666677778888888888887777777788888888888877766 67777888888888888877


Q ss_pred             ccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccc
Q 020161          221 MKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRET  300 (330)
Q Consensus       221 ~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~  300 (330)
                      .+.+..++.++.+.+..|.+++++.+..+++++.|++++|+++++..+..+++|++|++++|++++++.     +..+++
T Consensus       278 ~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~-----l~~l~~  352 (384)
T d2omza2         278 ISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSS-----LANLTN  352 (384)
T ss_dssp             CGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGG-----GGGCTT
T ss_pred             CCccccccccccccccccccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChh-----HcCCCC
Confidence            777777778888888888887777777778888888888888877667778888888888888876542     466788


Q ss_pred             cchhhccCCCccccc
Q 020161          301 LTTIYLENNPCKIFK  315 (330)
Q Consensus       301 L~~l~l~~n~~~~~~  315 (330)
                      |+.|++++|++++..
T Consensus       353 L~~L~l~~N~l~~l~  367 (384)
T d2omza2         353 INWLSAGHNQISDLT  367 (384)
T ss_dssp             CCEEECCSSCCCBCG
T ss_pred             CCEEECCCCcCCCCh
Confidence            888888888877654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=3.6e-26  Score=200.63  Aligned_cols=279  Identities=26%  Similarity=0.367  Sum_probs=234.0

Q ss_pred             ccccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCc
Q 020161           20 VEIDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLE   99 (330)
Q Consensus        20 ~~~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~   99 (330)
                      +....++++|+++++++++++++..+++|++|++++|.+..+++ +.++++|+.++++++.+.+.....     ....+.
T Consensus        62 l~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i~~-l~~l~~L~~L~~~~~~~~~~~~~~-----~~~~~~  135 (384)
T d2omza2          62 VEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDPLK-----NLTNLN  135 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGT-----TCTTCS
T ss_pred             cccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccccc-cccccccccccccccccccccccc-----cccccc
Confidence            45678999999999999999888889999999999999998875 889999999999998877642211     112222


Q ss_pred             EEEcc-------------------------------------------CCcCcCCCCCCCCCcccEEEccCCCCcCcccc
Q 020161          100 ELILR-------------------------------------------DNKLMKIPDVSIFKKLSVFDVSFNEITSSHGL  136 (330)
Q Consensus       100 ~L~l~-------------------------------------------~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~  136 (330)
                      .....                                           .+..........++++..++++++.+..+.+ 
T Consensus       136 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~-  214 (384)
T d2omza2         136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITP-  214 (384)
T ss_dssp             EEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred             ccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCc-
Confidence            22111                                           1111111123556889999999999887765 


Q ss_pred             ccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCC
Q 020161          137 SNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQS  215 (330)
Q Consensus       137 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~  215 (330)
                      ...+++|+.+++++|.+..++.+..+++|+.+++++|.++....+..+++|+.|+++.+.+... .+..++.++.+.+..
T Consensus       215 ~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~  294 (384)
T d2omza2         215 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNE  294 (384)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCS
T ss_pred             ccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccc
Confidence            3446889999999999998888889999999999999998877889999999999999998877 788889999999999


Q ss_pred             CccccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHh
Q 020161          216 NRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVA  295 (330)
Q Consensus       216 ~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  295 (330)
                      |.+++.+.+..++.++.+++++|++++++.+..+++|++|++++|+++.++.+..+++|++|++++|+++++++     +
T Consensus       295 n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~l~~l~~l~~L~~L~l~~N~l~~l~~-----l  369 (384)
T d2omza2         295 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLANLTNINWLSAGHNQISDLTP-----L  369 (384)
T ss_dssp             SCCSCCGGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCBCGG-----G
T ss_pred             cccccccccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCCChhHcCCCCCCEEECCCCcCCCChh-----h
Confidence            99998888889999999999999999998889999999999999999999889999999999999999997752     6


Q ss_pred             ccccccchhhccCCC
Q 020161          296 GSRETLTTIYLENNP  310 (330)
Q Consensus       296 ~~~~~L~~l~l~~n~  310 (330)
                      .++++|+.|+|++|.
T Consensus       370 ~~l~~L~~L~L~~Na  384 (384)
T d2omza2         370 ANLTRITQLGLNDQA  384 (384)
T ss_dssp             TTCTTCSEEECCCEE
T ss_pred             ccCCCCCEeeCCCCc
Confidence            789999999999874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.93  E-value=2.2e-24  Score=183.36  Aligned_cols=236  Identities=23%  Similarity=0.354  Sum_probs=152.7

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      ...+.+|+++.+++.+|. ..++++++|++++|+|+.++. .|.++++|++|++++|.+....   ...|..++.|++|+
T Consensus        10 c~~~~~~C~~~~L~~lP~-~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~---~~~f~~l~~L~~L~   85 (305)
T d1xkua_          10 CHLRVVQCSDLGLEKVPK-DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS---PGAFAPLVKLERLY   85 (305)
T ss_dssp             EETTEEECTTSCCCSCCC-SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEE
T ss_pred             ecCCEEEecCCCCCccCC-CCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccc---hhhhhCCCccCEec
Confidence            467889999999999987 667899999999999999987 5899999999999999998863   34577899999999


Q ss_pred             ccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccc-cCCCcEEEccCCCCCC----cccccCCCCccEEEcCCccccc
Q 020161          103 LRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVSKNEVPK----MEEIEHFHDLQILEFGSNRLRV  177 (330)
Q Consensus       103 l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~  177 (330)
                      +++|.++.+|. .....+..++...|.+..+...... ......+....+....    ...+..+++|+.++++++.+..
T Consensus        86 l~~n~l~~l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~  164 (305)
T d1xkua_          86 LSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT  164 (305)
T ss_dssp             CCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS
T ss_pred             ccCCccCcCcc-chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc
Confidence            99999998875 3456788899988888776543322 4455566665554332    1234555556666666655543


Q ss_pred             cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc-CCCCCCC
Q 020161          178 MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME-GLSTLVN  251 (330)
Q Consensus       178 ~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~  251 (330)
                      .+. ...++|++|+++++.....   .+..++.+++|++++|.++..  ..+..+++|++|++++|.++.++ ++..+++
T Consensus       165 l~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~  243 (305)
T d1xkua_         165 IPQ-GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY  243 (305)
T ss_dssp             CCS-SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred             cCc-ccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccC
Confidence            211 1234555555555544333   344444555555555555444  12344455555555555555442 3444455


Q ss_pred             CCEEEcCCCCCCCc
Q 020161          252 LHVLDVSSNKLTLV  265 (330)
Q Consensus       252 L~~L~l~~n~~~~~  265 (330)
                      |++|++++|+++.+
T Consensus       244 L~~L~Ls~N~i~~i  257 (305)
T d1xkua_         244 IQVVYLHNNNISAI  257 (305)
T ss_dssp             CCEEECCSSCCCCC
T ss_pred             CCEEECCCCccCcc
Confidence            55555555554443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=2.5e-23  Score=176.86  Aligned_cols=261  Identities=22%  Similarity=0.337  Sum_probs=215.0

Q ss_pred             CcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEE
Q 020161           47 NLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFD  124 (330)
Q Consensus        47 ~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~  124 (330)
                      ..++++.++.+++++|..+.  +++++|++++|.++...   ...|..+++|++|++++|.+..+++  +..+++|++++
T Consensus        11 ~~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~---~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBC---TTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcC---hhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            57889999999999998663  68999999999998862   3457789999999999999998754  78899999999


Q ss_pred             ccCCCCcCccccccccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCcccc----ccccccCCCCCcEEECcCCCcc
Q 020161          125 VSFNEITSSHGLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLR----VMENLQNLTNLQELWLGRNRIK  198 (330)
Q Consensus       125 l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~----~~~~l~~~~~L~~L~l~~~~i~  198 (330)
                      +.+|++..++..  ....+..|....+.+..+.  .+.....+..+.+..+...    ....+..+++|+.++++++.+.
T Consensus        86 l~~n~l~~l~~~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          86 LSKNQLKELPEK--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CCSSCCSBCCSS--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             ccCCccCcCccc--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            999999877653  3467899999999888753  3566777888888877543    2345778889999999999988


Q ss_pred             ccccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--CCCCCCCCCEEEcCCCCCCCc-cccccCCC
Q 020161          199 VVNLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHVLDVSSNKLTLV-DDIQNLSR  273 (330)
Q Consensus       199 ~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~  273 (330)
                      ..+...+++++.|++.+|..+..  ..+..++.++.|++++|.+++++  .+.++++|++|++++|+++.+ +.+..+++
T Consensus       164 ~l~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~  243 (305)
T d1xkua_         164 TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY  243 (305)
T ss_dssp             SCCSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred             ccCcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccccccccccccccccC
Confidence            87666788999999999987766  45778899999999999999863  467889999999999999988 67888999


Q ss_pred             CCeEeCCCCCCCchHHHH---HHHhccccccchhhccCCCcccc
Q 020161          274 LEDLWLNDNQIESLESIV---EAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       274 L~~L~l~~n~l~~~~~~~---~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      |++|++++|+|+.++...   ..+....++|+.|++++|++...
T Consensus       244 L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~  287 (305)
T d1xkua_         244 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW  287 (305)
T ss_dssp             CCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGG
T ss_pred             CCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccC
Confidence            999999999999875321   12345678899999999997653

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.87  E-value=1.1e-19  Score=156.88  Aligned_cols=276  Identities=24%  Similarity=0.275  Sum_probs=190.4

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      .++++||++++.++.+|.  .+++|++|++++|+|+.+|..   ..+|+.|++++|.++...     .+  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~~lp~--~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~l~~n~l~~l~-----~l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPE--LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALS-----DL--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCC-----SC--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCCCCCC--CCCCCCEEECCCCCCcccccc---hhhhhhhhhhhcccchhh-----hh--ccccccccc
Confidence            478999999999999984  578999999999999999864   468999999999887642     11  256999999


Q ss_pred             cCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc-------
Q 020161          104 RDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR-------  176 (330)
Q Consensus       104 ~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~-------  176 (330)
                      ++|.+..+|.+..+++|+++++.++.+...+..   ...+..+.+..+.......+..++.++.+.+..+...       
T Consensus       106 ~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~---~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~  182 (353)
T d1jl5a_         106 SNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPL  182 (353)
T ss_dssp             CSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCT
T ss_pred             cccccccccchhhhccceeeccccccccccccc---cccccchhhccccccccccccccccceecccccccccccccccc
Confidence            999999999888899999999999987655443   3445666666665555555666667777776655432       


Q ss_pred             -------------ccccccCCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCC
Q 020161          177 -------------VMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKM  243 (330)
Q Consensus       177 -------------~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~  243 (330)
                                   .......++.++.+.++.+..... .....++..+.+..+.+...+.  ....+....+..+.+.++
T Consensus       183 ~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~-~~~~~~l~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~l  259 (353)
T d1jl5a_         183 SLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTL-PDLPPSLEALNVRDNYLTDLPE--LPQSLTFLDVSENIFSGL  259 (353)
T ss_dssp             TCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSC-CSCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc--cccccccccccccccccc
Confidence                         222344556677777776654443 2233456666666555543321  122333333333322211


Q ss_pred             -----------------cC-CCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhh
Q 020161          244 -----------------EG-LSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIY  305 (330)
Q Consensus       244 -----------------~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~  305 (330)
                                       .. ...+++|++|++++|+++.++.  .+++|+.|++++|+|++++.       .+++|+.|+
T Consensus       260 ~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~L~~l~~-------~~~~L~~L~  330 (353)
T d1jl5a_         260 SELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE-------LPQNLKQLH  330 (353)
T ss_dssp             SCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-------CCTTCCEEE
T ss_pred             ccccchhcccccccCccccccccCCCCCEEECCCCccCcccc--ccCCCCEEECCCCcCCcccc-------ccCCCCEEE
Confidence                             01 1235789999999999998853  46899999999999998763       346899999


Q ss_pred             ccCCCccccccccccccCCCCCCC
Q 020161          306 LENNPCKIFKLFCYPQTNFPKYTA  329 (330)
Q Consensus       306 l~~n~~~~~~~~~~~~~~~p~~~~  329 (330)
                      +++|+++.++.  . ..+++.+..
T Consensus       331 L~~N~L~~lp~--~-~~~L~~L~~  351 (353)
T d1jl5a_         331 VEYNPLREFPD--I-PESVEDLRM  351 (353)
T ss_dssp             CCSSCCSSCCC--C-CTTCCEEEC
T ss_pred             CcCCcCCCCCc--c-ccccCeeEC
Confidence            99999987753  2 234555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.87  E-value=6e-21  Score=154.85  Aligned_cols=187  Identities=21%  Similarity=0.325  Sum_probs=97.3

Q ss_pred             ccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCc
Q 020161           94 ALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSN  173 (330)
Q Consensus        94 ~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~  173 (330)
                      .+.+|++|++.+|.++.++++..+++|++|++++|.+..+.+ ...+++++.+++++|.++.+..+..+++|+.+.++++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~-l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~  117 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTST  117 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTS
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecccc-ccccccccccccccccccccccccccccccccccccc
Confidence            355566666666666655555556666666666655544433 2223444444444444444444444444444444444


Q ss_pred             cccccccccCCCCCcEEECcCCCccccccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCC
Q 020161          174 RLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLH  253 (330)
Q Consensus       174 ~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~  253 (330)
                      .......+                     ...+.+..+.++++.+.....+..++.|+.+++.+|.+.+...+.++++|+
T Consensus       118 ~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~  176 (227)
T d1h6ua2         118 QITDVTPL---------------------AGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLT  176 (227)
T ss_dssp             CCCCCGGG---------------------TTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCC
T ss_pred             cccccchh---------------------ccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccce
Confidence            43333333                     333444444444444444444445555555555555555555555556666


Q ss_pred             EEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhcc
Q 020161          254 VLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLE  307 (330)
Q Consensus       254 ~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~  307 (330)
                      +|++++|++++++.+..+++|++|++++|+++++++     +.++++|+.|+++
T Consensus       177 ~L~Ls~n~l~~l~~l~~l~~L~~L~Ls~N~lt~i~~-----l~~l~~L~~L~ls  225 (227)
T d1h6ua2         177 TLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP-----LANTSNLFIVTLT  225 (227)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG-----GTTCTTCCEEEEE
T ss_pred             ecccCCCccCCChhhcCCCCCCEEECcCCcCCCCcc-----cccCCCCCEEEee
Confidence            666666666655555556666666666666665431     4455666655554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.86  E-value=4.6e-21  Score=155.53  Aligned_cols=179  Identities=28%  Similarity=0.402  Sum_probs=141.7

Q ss_pred             cCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCcc
Q 020161          140 TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRL  218 (330)
Q Consensus       140 ~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l  218 (330)
                      +.+|+.|++.+|.+..++.+..+++|++|++++|.+..+..+..+++++.++++.+.+.+. .+..+++|+.+.++++..
T Consensus        40 l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~  119 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI  119 (227)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCC
T ss_pred             cCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccc
Confidence            4455556666655555555666677777777777766555567777777777777776665 567778888888888887


Q ss_pred             ccccccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHHHHHHHhccc
Q 020161          219 TSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLESIVEAVAGSR  298 (330)
Q Consensus       219 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~  298 (330)
                      .....+...+.++.+.++.+.+.....+...++|+.|++++|.++....+..+++|++|++++|+++++++     +.++
T Consensus       120 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l~~-----l~~l  194 (227)
T d1h6ua2         120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-----LASL  194 (227)
T ss_dssp             CCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-----GGGC
T ss_pred             cccchhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccCCCccCCChh-----hcCC
Confidence            77777788899999999999998887788899999999999999988778999999999999999998753     6788


Q ss_pred             cccchhhccCCCccccccccccccCCCCC
Q 020161          299 ETLTTIYLENNPCKIFKLFCYPQTNFPKY  327 (330)
Q Consensus       299 ~~L~~l~l~~n~~~~~~~~~~~~~~~p~~  327 (330)
                      ++|+.|++++|++++++.+    ..+|++
T Consensus       195 ~~L~~L~Ls~N~lt~i~~l----~~l~~L  219 (227)
T d1h6ua2         195 PNLIEVHLKNNQISDVSPL----ANTSNL  219 (227)
T ss_dssp             TTCCEEECTTSCCCBCGGG----TTCTTC
T ss_pred             CCCCEEECcCCcCCCCccc----ccCCCC
Confidence            9999999999999887632    345554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.85  E-value=2.9e-21  Score=164.50  Aligned_cols=236  Identities=20%  Similarity=0.284  Sum_probs=158.5

Q ss_pred             CCcCEEecCCCCCCC---hhhhhhcCCCCCEEeCCC-CcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCc
Q 020161           46 TNLTELDLTANRLTS---LDSRISHLSNLKKLSLRQ-NLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKK  119 (330)
Q Consensus        46 ~~L~~L~l~~~~i~~---l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~  119 (330)
                      .++++|+++++++.+   +|+.++.+++|++|++++ |.+.+..|   ..+.++++|++|++++|.+.+++.  +.....
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP---~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~  126 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIP---PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT  126 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCC---GGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccc---cccccccccchhhhccccccccccccccchhh
Confidence            468889999988873   677888899999999886 67776543   346678888888888888876543  566777


Q ss_pred             ccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcccc--ccccccCCCCC-cEEECcCCC
Q 020161          120 LSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENLQNLTNL-QELWLGRNR  196 (330)
Q Consensus       120 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L-~~L~l~~~~  196 (330)
                      |++++++.|.+....+                     ..+..++.++.+++++|.+.  .+..+..+..+ +.++++.|.
T Consensus       127 L~~l~l~~N~~~~~~p---------------------~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~  185 (313)
T d1ogqa_         127 LVTLDFSYNALSGTLP---------------------PSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR  185 (313)
T ss_dssp             CCEEECCSSEEESCCC---------------------GGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSE
T ss_pred             hcccccccccccccCc---------------------hhhccCcccceeecccccccccccccccccccccccccccccc
Confidence            7777777776544322                     22333444444444444432  22333333333 455555555


Q ss_pred             cccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCC-CcCCCCCCCCCEEEcCCCCCCCc--ccc
Q 020161          197 IKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISK-MEGLSTLVNLHVLDVSSNKLTLV--DDI  268 (330)
Q Consensus       197 i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~--~~~  268 (330)
                      +.+.   .+... ....+++.++...+.  ..+...+.++.+++.++.+.+ ++.+..+++|+.|++++|++++.  +.+
T Consensus       186 l~~~~~~~~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l  264 (313)
T d1ogqa_         186 LTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             EEEECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             cccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHH
Confidence            4443   12222 234566666654443  234567788888888888775 45677788999999999999844  678


Q ss_pred             ccCCCCCeEeCCCCCCC-chHHHHHHHhccccccchhhccCCCc
Q 020161          269 QNLSRLEDLWLNDNQIE-SLESIVEAVAGSRETLTTIYLENNPC  311 (330)
Q Consensus       269 ~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~L~~l~l~~n~~  311 (330)
                      ..+++|++|+|++|+++ .+|    . ..++++|+.+++++|++
T Consensus       265 ~~L~~L~~L~Ls~N~l~g~iP----~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         265 TQLKFLHSLNVSFNNLCGEIP----Q-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECC----C-STTGGGSCGGGTCSSSE
T ss_pred             hCCCCCCEEECcCCcccccCC----C-cccCCCCCHHHhCCCcc
Confidence            89999999999999988 343    2 46788999999999984

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.9e-20  Score=155.59  Aligned_cols=191  Identities=22%  Similarity=0.234  Sum_probs=143.1

Q ss_pred             cccCCCcEEEccCCcCcCCCC-CCCCCcccEEEccCCCCcCccccc-cccCCCcEEEccCCCCCCcccccCCCCccEEEc
Q 020161           93 DALAGLEELILRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLS-NVTDTLKELYVSKNEVPKMEEIEHFHDLQILEF  170 (330)
Q Consensus        93 ~~~~~L~~L~l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l  170 (330)
                      .....+.+++.+++.++.+|+ +  -+++++|++++|.+..++... ..+++|+.|++++|.++.++.+..+++|++|++
T Consensus         7 ~~~~~~~~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~L   84 (266)
T d1p9ag_           7 SKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDL   84 (266)
T ss_dssp             ECSTTCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEEC
T ss_pred             cccCCCeEEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccc
Confidence            344556667777777777764 3  246778888888777766433 336778888888887777666778888999999


Q ss_pred             CCccccc-cccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCcccccc--ccccccccceEEccCCCCCCCc
Q 020161          171 GSNRLRV-MENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSMK--GFEECIALEELYLSHNGISKME  244 (330)
Q Consensus       171 ~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~  244 (330)
                      ++|.++. ...+..+++|+.|+++++.+...   .+..+.+++.+.+.+|.++..+  .+..++.++.+++++|++++++
T Consensus        85 s~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             CSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             ccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence            9988863 35567788899999988876655   5667788888888888887763  3556788888888888888764


Q ss_pred             --CCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCC
Q 020161          245 --GLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       245 --~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~  285 (330)
                        .+..+++|++|++++|+++.+ +.+..+++|+.|+|++|++.
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence              367788888888888888877 45667788888888888776

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.84  E-value=6.1e-21  Score=162.49  Aligned_cols=219  Identities=19%  Similarity=0.204  Sum_probs=158.6

Q ss_pred             CCCCEEeCCCCcCCccccccchhhcccCCCcEEEccC-CcCc-CCCC-CCCCCcccEEEccCCCCcCccccccccCCCcE
Q 020161           69 SNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRD-NKLM-KIPD-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKE  145 (330)
Q Consensus        69 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~-~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~  145 (330)
                      .+++.|+++++.+.+..+ .+..+..+++|++|++++ |.++ .+|. ++++++|++|++++|++.+...          
T Consensus        50 ~~v~~L~L~~~~l~g~~~-lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~----------  118 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIP----------  118 (313)
T ss_dssp             CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECC----------
T ss_pred             EEEEEEECCCCCCCCCCC-CChHHhcCccccccccccccccccccccccccccccchhhhcccccccccc----------
Confidence            357778888877765321 123566778888888875 5665 4664 6777777777777776654432          


Q ss_pred             EEccCCCCCCcccccCCCCccEEEcCCcccc--ccccccCCCCCcEEECcCCCcccc---ccCCCCc-ccEEECCCCccc
Q 020161          146 LYVSKNEVPKMEEIEHFHDLQILEFGSNRLR--VMENLQNLTNLQELWLGRNRIKVV---NLCGLKC-IKKISLQSNRLT  219 (330)
Q Consensus       146 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~-L~~L~l~~~~l~  219 (330)
                                 ..+..+.+|+.++++.|.+.  .+..+..++.++.+++++|.+.+.   .+..... ++.+.+++|+++
T Consensus       119 -----------~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~  187 (313)
T d1ogqa_         119 -----------DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT  187 (313)
T ss_dssp             -----------GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEE
T ss_pred             -----------ccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccc
Confidence                       23455667777888777663  446788999999999999987754   3444545 488999999888


Q ss_pred             cc-c-ccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc-cccccCCCCCeEeCCCCCCCchHHHHHHH
Q 020161          220 SM-K-GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV-DDIQNLSRLEDLWLNDNQIESLESIVEAV  294 (330)
Q Consensus       220 ~~-~-~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  294 (330)
                      +. + .+... ....+++..+...+.  ..+..+++++.+++++|.++.. +.+..+++|+.|++++|+++.   .++..
T Consensus       188 ~~~~~~~~~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g---~iP~~  263 (313)
T d1ogqa_         188 GKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYG---TLPQG  263 (313)
T ss_dssp             EECCGGGGGC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEE---CCCGG
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccCccCeecc---cCChH
Confidence            66 2 33333 445688888776653  3456788999999999998876 677888999999999999982   22355


Q ss_pred             hccccccchhhccCCCccc
Q 020161          295 AGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       295 ~~~~~~L~~l~l~~n~~~~  313 (330)
                      +.++++|+.|+|++|.+.+
T Consensus       264 l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         264 LTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             GGGCTTCCEEECCSSEEEE
T ss_pred             HhCCCCCCEEECcCCcccc
Confidence            7889999999999999873

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.2e-19  Score=148.07  Aligned_cols=189  Identities=25%  Similarity=0.304  Sum_probs=138.1

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      .+..+++++++.++.+|. ..++++++|++++|.|+.++. .|.++++|++|++++|.++..     ..+..+++|++|+
T Consensus        10 ~~~~~v~C~~~~L~~iP~-~lp~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-----~~~~~l~~L~~L~   83 (266)
T d1p9ag_          10 ASHLEVNCDKRNLTALPP-DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-----QVDGTLPVLGTLD   83 (266)
T ss_dssp             TTCCEEECTTSCCSSCCS-CCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-----ECCSCCTTCCEEE
T ss_pred             CCCeEEEccCCCCCeeCc-CcCcCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-----ccccccccccccc
Confidence            345667999999999875 567899999999999998876 588999999999999998764     2345689999999


Q ss_pred             ccCCcCcCCCC-CCCCCcccEEEccCCCCcCcccccc-ccCCCcEEEccCCCCCCc--ccccCCCCccEEEcCCcccccc
Q 020161          103 LRDNKLMKIPD-VSIFKKLSVFDVSFNEITSSHGLSN-VTDTLKELYVSKNEVPKM--EEIEHFHDLQILEFGSNRLRVM  178 (330)
Q Consensus       103 l~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~  178 (330)
                      +++|.++.++. +..+++|++|+++++.+..+..... .+.+++.|++.+|.+..+  ..+..+++++.+++++|.++..
T Consensus        84 Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          84 LSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            99999987765 7778899999999998877654433 367777777777776663  2345566777777777766533


Q ss_pred             --ccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCcc
Q 020161          179 --ENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRL  218 (330)
Q Consensus       179 --~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l  218 (330)
                        ..+..+++|++|++++|.+...  .+...++|+.|++++|..
T Consensus       164 ~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         164 PAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             CccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence              2355566666666666666554  344455566666666543

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.6e-19  Score=151.43  Aligned_cols=207  Identities=21%  Similarity=0.309  Sum_probs=130.4

Q ss_pred             EEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccc-cCCCcEEEcc
Q 020161           73 KLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNV-TDTLKELYVS  149 (330)
Q Consensus        73 ~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~L~~L~l~  149 (330)
                      .+..++..++.. |..+     .+.+++|++++|.++.+|.  +..+++|++++++++.+..+...... ...+..+...
T Consensus        15 ~v~c~~~~L~~i-P~~i-----p~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~   88 (284)
T d1ozna_          15 TTSCPQQGLQAV-PVGI-----PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS   88 (284)
T ss_dssp             EEECCSSCCSSC-CTTC-----CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             EEEcCCCCCCcc-CCCC-----CCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccc
Confidence            455666555543 2111     2567888888888887775  77788888888888887766654333 4556666554


Q ss_pred             C-CCCCCc--ccccCCCCccEEEcCCcccccc--ccccCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc
Q 020161          150 K-NEVPKM--EEIEHFHDLQILEFGSNRLRVM--ENLQNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM  221 (330)
Q Consensus       150 ~-~~~~~~--~~~~~~~~L~~L~l~~~~~~~~--~~l~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~  221 (330)
                      . +.+..+  ..+..+++|++|+++.+.+...  ..+.....|+.+++++|.+...   .+...++++.|++++|.++..
T Consensus        89 ~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l  168 (284)
T d1ozna_          89 DNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV  168 (284)
T ss_dssp             SCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred             cccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCccccc
Confidence            3 333332  3466667777777777766422  3345556677777777766554   355566677777777666655


Q ss_pred             c--ccccccccceEEccCCCCCCC--cCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCC
Q 020161          222 K--GFEECIALEELYLSHNGISKM--EGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       222 ~--~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~  285 (330)
                      +  .+..+++|+.+++.+|+++++  ..+..+++|++|++++|+++..  ..+..+++|++|++++|++.
T Consensus       169 ~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             chhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            2  355666677777777666654  3456666677777777766665  44566666777777776665

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=6.1e-19  Score=147.79  Aligned_cols=214  Identities=22%  Similarity=0.324  Sum_probs=147.9

Q ss_pred             cEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEcc-
Q 020161           27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILR-  104 (330)
Q Consensus        27 ~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~-  104 (330)
                      .++++++..+..+|. ..++.+++|++++|+|+.+++ .|.++++|++|+++++.+....   ...+..++.+.++... 
T Consensus        14 ~~v~c~~~~L~~iP~-~ip~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~---~~~~~~~~~~~~l~~~~   89 (284)
T d1ozna_          14 VTTSCPQQGLQAVPV-GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID---AAAFTGLALLEQLDLSD   89 (284)
T ss_dssp             CEEECCSSCCSSCCT-TCCTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTTTCTTCCEEECCS
T ss_pred             eEEEcCCCCCCccCC-CCCCCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc---ccccccccccccccccc
Confidence            456788888898876 567899999999999999987 4899999999999999988863   3345567888888765 


Q ss_pred             CCcCcCCCC--CCCCCcccEEEccCCCCcCcccccc-ccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccc
Q 020161          105 DNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSN-VTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENL  181 (330)
Q Consensus       105 ~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l  181 (330)
                      .+.++.++.  ++.+++|++|++.+|.+..+..... ...+|+.+++++|.+..+..                    ..+
T Consensus        90 ~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~--------------------~~f  149 (284)
T d1ozna_          90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPD--------------------DTF  149 (284)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT--------------------TTT
T ss_pred             ccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccCh--------------------hHh
Confidence            456666653  7778889999998888766544322 24556666666655544211                    123


Q ss_pred             cCCCCCcEEECcCCCcccc---ccCCCCcccEEECCCCccccc--cccccccccceEEccCCCCCCCc--CCCCCCCCCE
Q 020161          182 QNLTNLQELWLGRNRIKVV---NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSHNGISKME--GLSTLVNLHV  254 (330)
Q Consensus       182 ~~~~~L~~L~l~~~~i~~~---~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~L~~  254 (330)
                      ..+++|+.|++++|.+...   .+..+++|+.+.+.+|+++..  ..+..+++++.+++++|.+.+++  .+..+++|++
T Consensus       150 ~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~  229 (284)
T d1ozna_         150 RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY  229 (284)
T ss_dssp             TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCE
T ss_pred             ccccchhhcccccCcccccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCE
Confidence            3444555555555554433   345556666666666666655  24566777777788777777763  4667778888


Q ss_pred             EEcCCCCCCC
Q 020161          255 LDVSSNKLTL  264 (330)
Q Consensus       255 L~l~~n~~~~  264 (330)
                      |++++|++..
T Consensus       230 L~l~~N~l~C  239 (284)
T d1ozna_         230 LRLNDNPWVC  239 (284)
T ss_dssp             EECCSSCEEC
T ss_pred             EEecCCCCCC
Confidence            8888887663

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.82  E-value=3e-19  Score=141.53  Aligned_cols=159  Identities=26%  Similarity=0.379  Sum_probs=70.7

Q ss_pred             cCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcc
Q 020161           95 LAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR  174 (330)
Q Consensus        95 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  174 (330)
                      ++++++|+++++.++.++++..+++|++|++++|.++.+.                       .+..+++|++|++++|.
T Consensus        39 l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~-----------------------~l~~l~~L~~L~l~~n~   95 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT-----------------------PLKNLTKLVDILMNNNQ   95 (199)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG-----------------------GGTTCTTCCEEECCSSC
T ss_pred             hcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcc-----------------------cccCCcccccccccccc
Confidence            4555556655555555544445555555555555444332                       23333344444444443


Q ss_pred             ccccccccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCC
Q 020161          175 LRVMENLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLH  253 (330)
Q Consensus       175 ~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~  253 (330)
                      +.....+..++.|+.|+++++..... .+..+++|+.+++++|.+...+.+..++.++.+++.+|.+++++.+.++++|+
T Consensus        96 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~  175 (199)
T d2omxa2          96 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLE  175 (199)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCC
T ss_pred             cccccccccccccccccccccccccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccCCccccCCCCCC
Confidence            33333333444444444444333322 23333444444444444443333444444444444444444444444444444


Q ss_pred             EEEcCCCCCCCccccccCCCCCe
Q 020161          254 VLDVSSNKLTLVDDIQNLSRLED  276 (330)
Q Consensus       254 ~L~l~~n~~~~~~~~~~~~~L~~  276 (330)
                      +|++++|++++++.+..+++|+.
T Consensus       176 ~L~ls~N~i~~i~~l~~L~~L~~  198 (199)
T d2omxa2         176 RLDISSNKVSDISVLAKLTNLES  198 (199)
T ss_dssp             EEECCSSCCCCCGGGGGCTTCSE
T ss_pred             EEECCCCCCCCCccccCCCCCCc
Confidence            44444444444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=2.9e-19  Score=142.87  Aligned_cols=80  Identities=15%  Similarity=0.337  Sum_probs=43.1

Q ss_pred             cCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCcc
Q 020161           95 LAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNR  174 (330)
Q Consensus        95 ~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~  174 (330)
                      +.+|++|+++++.++.++++..+++|++|++++|++..+++. ..+++|+.|++++|.+..++.+..+++|+.++++++.
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~-~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~  123 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPL-ANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG  123 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGG-TTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSC
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCcccc-ccCcccccccccccccccccccccccccccccccccc
Confidence            556677777777776666666666666666666666554432 2234444444444444443334444444444444443


Q ss_pred             c
Q 020161          175 L  175 (330)
Q Consensus       175 ~  175 (330)
                      +
T Consensus       124 ~  124 (210)
T d1h6ta2         124 I  124 (210)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.81  E-value=4.2e-19  Score=141.90  Aligned_cols=104  Identities=20%  Similarity=0.323  Sum_probs=54.3

Q ss_pred             cCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccCCCCcCccccccccCCCcEE
Q 020161           67 HLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSFNEITSSHGLSNVTDTLKEL  146 (330)
Q Consensus        67 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L  146 (330)
                      .+.+|++|+++++.+...     ..+..+++|++|++++|.++.++++..+++|++|++++|+++.++. ...+++|+.+
T Consensus        44 ~L~~L~~L~l~~~~i~~l-----~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~-l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV-----QGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred             HhcCccEEECcCCCCCCc-----hhHhhCCCCCEEeCCCccccCccccccCcccccccccccccccccc-cccccccccc
Confidence            344555666666555442     1234455666666666655555555555566666666665555442 2224555666


Q ss_pred             EccCCCCCCcccccCCCCccEEEcCCcccc
Q 020161          147 YVSKNEVPKMEEIEHFHDLQILEFGSNRLR  176 (330)
Q Consensus       147 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~  176 (330)
                      ++.+|....+..+..+++++.++++.+.++
T Consensus       118 ~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~  147 (210)
T d1h6ta2         118 SLEHNGISDINGLVHLPQLESLYLGNNKIT  147 (210)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            665555554444444444444444444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.80  E-value=1.1e-18  Score=138.30  Aligned_cols=180  Identities=24%  Similarity=0.306  Sum_probs=118.5

Q ss_pred             cCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCCCCCCcccEEEccC
Q 020161           48 LTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDVSIFKKLSVFDVSF  127 (330)
Q Consensus        48 L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~L~l~~  127 (330)
                      .....++.+.++.... ...++++++|+++++.+...     ..+..+++|++|++++|.++.++++..+++|++|++++
T Consensus        20 ~i~~~l~~~~~~~~~~-~~~l~~l~~L~l~~~~i~~l-----~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~   93 (199)
T d2omxa2          20 KMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGIKSI-----DGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN   93 (199)
T ss_dssp             HHHHHTTCSSTTSEEC-HHHHTTCCEEECTTSCCCCC-----TTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCS
T ss_pred             HHHHHhCCCCCCCccC-HHHhcCCCEEECCCCCCCCc-----cccccCCCcCcCccccccccCcccccCCcccccccccc
Confidence            3345566777665432 35688999999999988763     34677999999999999999988888999999999999


Q ss_pred             CCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCccccccCCCCc
Q 020161          128 NEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKC  207 (330)
Q Consensus       128 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~  207 (330)
                      |.+..++. ...++.|+.++++++.......+..+++|+.+++++|.+..++.+..+++++.|++.+|.           
T Consensus        94 n~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~-----------  161 (199)
T d2omxa2          94 NQIADITP-LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQ-----------  161 (199)
T ss_dssp             SCCCCCGG-GTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSC-----------
T ss_pred             cccccccc-cccccccccccccccccccccccchhhhhHHhhhhhhhhccccccccccccccccccccc-----------
Confidence            98776654 233566666666666665555555566666666666555544445555555555555544           


Q ss_pred             ccEEECCCCccccccccccccccceEEccCCCCCCCcCCCCCCCCCEE
Q 020161          208 IKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEGLSTLVNLHVL  255 (330)
Q Consensus       208 L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L  255 (330)
                                +++.+.+..+++|+.|++++|++++++.+..+++|++|
T Consensus       162 ----------l~~l~~l~~l~~L~~L~ls~N~i~~i~~l~~L~~L~~L  199 (199)
T d2omxa2         162 ----------VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL  199 (199)
T ss_dssp             ----------CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEE
T ss_pred             ----------ccCCccccCCCCCCEEECCCCCCCCCccccCCCCCCcC
Confidence                      44444444555555555555555555444555555443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.74  E-value=9.5e-16  Score=131.70  Aligned_cols=246  Identities=20%  Similarity=0.235  Sum_probs=162.0

Q ss_pred             ccCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEE
Q 020161           22 IDLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEEL  101 (330)
Q Consensus        22 ~~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L  101 (330)
                      ..+++++|+++++.+..+|.  .+.+|++|++++|+++.++. +  .+.|++|++++|.+...     +.+..++.|+++
T Consensus        56 ~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~l~~n~l~~l~~-l--p~~L~~L~L~~n~l~~l-----p~~~~l~~L~~L  125 (353)
T d1jl5a_          56 LPPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSD-L--PPLLEYLGVSNNQLEKL-----PELQNSSFLKII  125 (353)
T ss_dssp             CCTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSCCCS-C--CTTCCEEECCSSCCSSC-----CCCTTCTTCCEE
T ss_pred             CCCCCCEEECCCCCCccccc--chhhhhhhhhhhcccchhhh-h--ccccccccccccccccc-----cchhhhccceee
Confidence            35789999999999999874  36799999999999987753 1  24699999999988764     234568899999


Q ss_pred             EccCCcCcCCCC--------------------CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccC
Q 020161          102 ILRDNKLMKIPD--------------------VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEH  161 (330)
Q Consensus       102 ~l~~~~l~~~~~--------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  161 (330)
                      +++++.+...+.                    +..++.++.+.+..+.....+..   ....+.+......+........
T Consensus       126 ~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~  202 (353)
T d1jl5a_         126 DVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDL---PLSLESIVAGNNILEELPELQN  202 (353)
T ss_dssp             ECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSSCCCCTT
T ss_pred             ccccccccccccccccccchhhccccccccccccccccceecccccccccccccc---cccccccccccccccccccccc
Confidence            999888775442                    12223344444444433322211   1122334444444444445667


Q ss_pred             CCCccEEEcCCccccccccccCCCCCcEEECcCCCccccccCCCCcccEEEC--------------------CCCccccc
Q 020161          162 FHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVVNLCGLKCIKKISL--------------------QSNRLTSM  221 (330)
Q Consensus       162 ~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~~~~L~~L~l--------------------~~~~l~~~  221 (330)
                      ++.++.++++++.......  ....+..+.+..+.+.... .....+....+                    ..+.+...
T Consensus       203 l~~L~~l~l~~n~~~~~~~--~~~~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  279 (353)
T d1jl5a_         203 LPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYLTDLP-ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL  279 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCCSCCC-CCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE
T ss_pred             ccccccccccccccccccc--ccccccccccccccccccc-cccccccccccccccccccccccchhcccccccCccccc
Confidence            7889999998887643321  2344566666665544321 11122333333                    33222222


Q ss_pred             cccccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchHH
Q 020161          222 KGFEECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLES  289 (330)
Q Consensus       222 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~  289 (330)
                        ...+++|++|++++|.++.++.  .+++|+.|++++|+++.++.  .+++|++|++++|+++.++.
T Consensus       280 --~~~~~~L~~L~Ls~N~l~~lp~--~~~~L~~L~L~~N~L~~l~~--~~~~L~~L~L~~N~L~~lp~  341 (353)
T d1jl5a_         280 --CDLPPSLEELNVSNNKLIELPA--LPPRLERLIASFNHLAEVPE--LPQNLKQLHVEYNPLREFPD  341 (353)
T ss_dssp             --CCCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCC
T ss_pred             --cccCCCCCEEECCCCccCcccc--ccCCCCEEECCCCcCCcccc--ccCCCCEEECcCCcCCCCCc
Confidence              2346799999999999998874  46899999999999998853  35689999999999998763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.2e-18  Score=151.17  Aligned_cols=93  Identities=25%  Similarity=0.314  Sum_probs=45.8

Q ss_pred             CcccccccCCCcEEeccCcccccCC------CCCCCCCcCEEecCCCCCCChh-----hhhh-cCCCCCEEeCCCCcCCc
Q 020161           16 PDQAVEIDLSNTVLDLTSFQLHDLD------SVEFPTNLTELDLTANRLTSLD-----SRIS-HLSNLKKLSLRQNLIDD   83 (330)
Q Consensus        16 ~~~~~~~~~~l~~l~l~~~~l~~~~------~~~~~~~L~~L~l~~~~i~~l~-----~~~~-~l~~L~~L~l~~~~~~~   83 (330)
                      |.+.+...+++++|+++++.++...      .+...++|++|++++|.|+...     ..+. ...+|++|++++|.+++
T Consensus        19 ~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~   98 (460)
T d1z7xw1          19 WAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG   98 (460)
T ss_dssp             HHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBG
T ss_pred             HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccc
Confidence            4445555566666666666554311      1223455666666666554211     1111 12356666666666555


Q ss_pred             cccccch-hhcccCCCcEEEccCCcC
Q 020161           84 AAIEPIS-RWDALAGLEELILRDNKL  108 (330)
Q Consensus        84 ~~~~~~~-~~~~~~~L~~L~l~~~~l  108 (330)
                      .....+. .+..++.|++|++++|.+
T Consensus        99 ~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          99 AGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             cccccccchhhccccccccccccccc
Confidence            4322222 234456666666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.4e-15  Score=123.92  Aligned_cols=211  Identities=18%  Similarity=0.252  Sum_probs=132.5

Q ss_pred             CCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           24 LSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        24 ~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      .+.+++++++..++.+|. ..++++++|++++|.|+.++. .|.++++|++|++++|.+....  +...|..++.++++.
T Consensus         8 C~~~~i~c~~~~l~~iP~-~l~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i--~~~~f~~l~~l~~l~   84 (242)
T d1xwdc1           8 CSNRVFLCQESKVTEIPS-DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI--EADVFSNLPKLHEIR   84 (242)
T ss_dssp             ECSSEEEEESCSCSSCCS-CSCSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEE--CSSSEESCTTCCEEE
T ss_pred             CcCCEEEEeCCCCCCcCC-CCCCCCCEEECcCCcCCccChhHhhccchhhhhhhcccccccee--ecccccccccccccc
Confidence            346789999999999886 556899999999999999887 4889999999999999887642  234567789999998


Q ss_pred             ccC-CcCcCCCC--CCCCCcccEEEccCCCCcCccccccc--cCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccc
Q 020161          103 LRD-NKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNV--TDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV  177 (330)
Q Consensus       103 l~~-~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~  177 (330)
                      +.. +.+..++.  +..+++|+++++.++.+...+.....  ...+..+...++.+..+.                    
T Consensus        85 ~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~--------------------  144 (242)
T d1xwdc1          85 IEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE--------------------  144 (242)
T ss_dssp             EECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC--------------------
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc--------------------
Confidence            764 46665443  57788888988888877655432211  233333333333332211                    


Q ss_pred             cccccCC-CCCcEEECcCCCcccc--ccCCCCcccEE-ECCCCcccccc--ccccccccceEEccCCCCCCCcC--CCCC
Q 020161          178 MENLQNL-TNLQELWLGRNRIKVV--NLCGLKCIKKI-SLQSNRLTSMK--GFEECIALEELYLSHNGISKMEG--LSTL  249 (330)
Q Consensus       178 ~~~l~~~-~~L~~L~l~~~~i~~~--~~~~~~~L~~L-~l~~~~l~~~~--~~~~~~~L~~l~l~~~~~~~~~~--~~~~  249 (330)
                      ...+..+ ..++.++++++.+...  ......++..+ .+.+|+++.++  .+..+++|+.|++++|+++.++.  +..+
T Consensus       145 ~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l  224 (242)
T d1xwdc1         145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL  224 (242)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTC
T ss_pred             ccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCC
Confidence            0112222 2455566666655544  11222333333 34556666653  35667777777777777776642  4444


Q ss_pred             CCCCEEEc
Q 020161          250 VNLHVLDV  257 (330)
Q Consensus       250 ~~L~~L~l  257 (330)
                      ++|+.+++
T Consensus       225 ~~L~~l~~  232 (242)
T d1xwdc1         225 KKLRARST  232 (242)
T ss_dssp             CEEESSSE
T ss_pred             cccccCcC
Confidence            44444443

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.1e-16  Score=117.29  Aligned_cols=132  Identities=20%  Similarity=0.215  Sum_probs=96.7

Q ss_pred             ccccCCCCCcEEECcCCCcccc--ccCCCCcccEEECCCCccccccccccccccceEEccCCCCCCCcC--CCCCCCCCE
Q 020161          179 ENLQNLTNLQELWLGRNRIKVV--NLCGLKCIKKISLQSNRLTSMKGFEECIALEELYLSHNGISKMEG--LSTLVNLHV  254 (330)
Q Consensus       179 ~~l~~~~~L~~L~l~~~~i~~~--~~~~~~~L~~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~~--~~~~~~L~~  254 (330)
                      ..+.++..+++|++++|.+...  .+..+++|+.|++++|.++..+.+..++.|++|++++|.++.++.  +..+++|++
T Consensus        12 ~~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~   91 (162)
T d1a9na_          12 AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE   91 (162)
T ss_dssp             CEEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred             HhccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCcccccccccccc
Confidence            3455666677777777776665  234566788888888877777777778888888888888887643  456788888


Q ss_pred             EEcCCCCCCCc---cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161          255 LDVSSNKLTLV---DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK  312 (330)
Q Consensus       255 L~l~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~  312 (330)
                      |++++|+++.+   ..+..+++|+++++++|+++..+..-..++..+|+|+.||  +.+++
T Consensus        92 L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD--~~~i~  150 (162)
T d1a9na_          92 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD--FQKVK  150 (162)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET--TEECC
T ss_pred             ceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC--CCCCC
Confidence            88888888776   3567788899999999988877655555677788888765  44443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=5e-15  Score=107.18  Aligned_cols=104  Identities=27%  Similarity=0.364  Sum_probs=84.0

Q ss_pred             cEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCC
Q 020161           27 TVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDN  106 (330)
Q Consensus        27 ~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  106 (330)
                      |+|++++++++.++.+..+++|++|++++|.++.+|..+..+++|++|++++|.+...     +.+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l-----~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV-----DGVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC-----GGGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc-----CccccccccCeEECCCC
Confidence            5788888888888877778889999999999888887788889999999999888764     24667888888888888


Q ss_pred             cCcCCCC---CCCCCcccEEEccCCCCcCccc
Q 020161          107 KLMKIPD---VSIFKKLSVFDVSFNEITSSHG  135 (330)
Q Consensus       107 ~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~  135 (330)
                      .++.++.   +..+++|+++++++|.+...+.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            8887664   5667888888888887765543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.59  E-value=2e-15  Score=109.34  Aligned_cols=102  Identities=30%  Similarity=0.392  Sum_probs=49.6

Q ss_pred             EEECCCCccccccccccccccceEEccCCCCCCCc-CCCCCCCCCEEEcCCCCCCCccccccCCCCCeEeCCCCCCCchH
Q 020161          210 KISLQSNRLTSMKGFEECIALEELYLSHNGISKME-GLSTLVNLHVLDVSSNKLTLVDDIQNLSRLEDLWLNDNQIESLE  288 (330)
Q Consensus       210 ~L~l~~~~l~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~  288 (330)
                      .|++++|.++..+.+..++.|++|++++|.+++++ .+..+++|++|++++|+++.++.+..+++|++|++++|++++++
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~~~~l~~L~~L~l~~N~i~~~~   81 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSA   81 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCccccccccCeEECCCCccCCCC
Confidence            34455555544444444555555555555555542 34445555555555555555544455555555555555555433


Q ss_pred             HHHHHHhccccccchhhccCCCccc
Q 020161          289 SIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       289 ~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      +.  ..+..+++|+.+++++|++..
T Consensus        82 ~~--~~l~~~~~L~~L~l~~N~i~~  104 (124)
T d1dcea3          82 AI--QPLVSCPRLVLLNLQGNSLCQ  104 (124)
T ss_dssp             TT--GGGGGCTTCCEEECTTSGGGG
T ss_pred             Cc--hhhcCCCCCCEEECCCCcCCc
Confidence            21  223444555555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=8.3e-16  Score=136.69  Aligned_cols=311  Identities=21%  Similarity=0.226  Sum_probs=184.4

Q ss_pred             CCCCCCCCcccCCCcccccccCCCcEEeccCcccccCC------CCCC-CCCcCEEecCCCCCCC-----hhhhhhcCCC
Q 020161            3 MDGEKQPSAEATNPDQAVEIDLSNTVLDLTSFQLHDLD------SVEF-PTNLTELDLTANRLTS-----LDSRISHLSN   70 (330)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~------~~~~-~~~L~~L~l~~~~i~~-----l~~~~~~l~~   70 (330)
                      +++..+++.....+.+++...+++++||++++.+...+      .+.. ..+|++|++++|.++.     ++..+..+++
T Consensus        34 L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~  113 (460)
T d1z7xw1          34 LDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPT  113 (460)
T ss_dssp             EESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTT
T ss_pred             eCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhcccc
Confidence            34445555555556666777889999999999886421      1222 3579999999999974     3445778999


Q ss_pred             CCEEeCCCCcCCccccccchh------------------------------hcccCCCcEEEccCCcCcC--CCC----C
Q 020161           71 LKKLSLRQNLIDDAAIEPISR------------------------------WDALAGLEELILRDNKLMK--IPD----V  114 (330)
Q Consensus        71 L~~L~l~~~~~~~~~~~~~~~------------------------------~~~~~~L~~L~l~~~~l~~--~~~----~  114 (330)
                      |++|++++|.+..........                              +.....++.+.++++....  +..    +
T Consensus       114 L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l  193 (460)
T d1z7xw1         114 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGL  193 (460)
T ss_dssp             CCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccccccccccccccccccccccc
Confidence            999999999876542211111                              1122333344443333221  000    0


Q ss_pred             -CCCCcccEEEccCCCCcCcc-----ccccccCCCcEEEccCCCCCCc-------ccccCCCCccEEEcCCccccc----
Q 020161          115 -SIFKKLSVFDVSFNEITSSH-----GLSNVTDTLKELYVSKNEVPKM-------EEIEHFHDLQILEFGSNRLRV----  177 (330)
Q Consensus       115 -~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~L~~L~l~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~----  177 (330)
                       ........+....+......     ........++.+.+..+.....       ........++.+++++|.+..    
T Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~  273 (460)
T d1z7xw1         194 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG  273 (460)
T ss_dssp             HHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH
T ss_pred             ccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccccccccccccccccccccccc
Confidence             01122334444444333211     1112245667777777655331       123445677888888776641    


Q ss_pred             --cccccCCCCCcEEECcCCCcccc--------ccCCCCcccEEECCCCcccccc------ccccccccceEEccCCCCC
Q 020161          178 --MENLQNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSMK------GFEECIALEELYLSHNGIS  241 (330)
Q Consensus       178 --~~~l~~~~~L~~L~l~~~~i~~~--------~~~~~~~L~~L~l~~~~l~~~~------~~~~~~~L~~l~l~~~~~~  241 (330)
                        ...+...+.++.++++.|.+.+.        .......++.+.++++.++...      ....+++|++|++++|.++
T Consensus       274 ~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~  353 (460)
T d1z7xw1         274 DLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  353 (460)
T ss_dssp             HHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             cccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeeccc
Confidence              12345567788888888877643        1223457888888888776542      2345567888888888876


Q ss_pred             CC------cCC-CCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeCCCCCCCchHH--HHHHHhccccccchhhc
Q 020161          242 KM------EGL-STLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWLNDNQIESLES--IVEAVAGSRETLTTIYL  306 (330)
Q Consensus       242 ~~------~~~-~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l~~n~l~~~~~--~~~~~~~~~~~L~~l~l  306 (330)
                      +.      +.+ ...+.|++|++++|++++.      ..+..+++|++|++++|++++-+.  ....+......|+.|++
T Consensus       354 ~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l  433 (460)
T d1z7xw1         354 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL  433 (460)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred             CcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEEC
Confidence            41      223 2456788888888888753      345667888888888888875211  11222223346888888


Q ss_pred             cCCCccc
Q 020161          307 ENNPCKI  313 (330)
Q Consensus       307 ~~n~~~~  313 (330)
                      .+|.+..
T Consensus       434 ~~~~~~~  440 (460)
T d1z7xw1         434 YDIYWSE  440 (460)
T ss_dssp             TTCCCCH
T ss_pred             CCCCCCH
Confidence            8888653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.4e-14  Score=115.55  Aligned_cols=208  Identities=20%  Similarity=0.184  Sum_probs=110.4

Q ss_pred             CEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCcccEEEccCCCCcCccccccccCCCcEEEcc
Q 020161           72 KKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVS  149 (330)
Q Consensus        72 ~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~  149 (330)
                      +.++.++..++.. |.   .+  .+.+++|++++|.++.++.  +..+++|++|++++|.+....+.             
T Consensus        11 ~~i~c~~~~l~~i-P~---~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~-------------   71 (242)
T d1xwdc1          11 RVFLCQESKVTEI-PS---DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA-------------   71 (242)
T ss_dssp             SEEEEESCSCSSC-CS---CS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECS-------------
T ss_pred             CEEEEeCCCCCCc-CC---CC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeec-------------
Confidence            4555555555432 11   11  1356666776666666554  55666666666666655442211             


Q ss_pred             CCCCCCcccccCCCCccEEEcCC-cccc--ccccccCCCCCcEEECcCCCcccc-c---cCCCCcccEEECCCCcccccc
Q 020161          150 KNEVPKMEEIEHFHDLQILEFGS-NRLR--VMENLQNLTNLQELWLGRNRIKVV-N---LCGLKCIKKISLQSNRLTSMK  222 (330)
Q Consensus       150 ~~~~~~~~~~~~~~~L~~L~l~~-~~~~--~~~~l~~~~~L~~L~l~~~~i~~~-~---~~~~~~L~~L~l~~~~l~~~~  222 (330)
                             ..+..++.++++.+.. +.+.  ....+..+++|++++++++.+... .   +.....+..+...++.+...+
T Consensus        72 -------~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~  144 (242)
T d1xwdc1          72 -------DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIE  144 (242)
T ss_dssp             -------SSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEEC
T ss_pred             -------cccccccccccccccccccccccccccccccccccccccchhhhccccccccccccccccccccccccccccc
Confidence                   1233334444443322 2221  112244455555555555544333 1   122233333344444444432


Q ss_pred             --ccccc-cccceEEccCCCCCCCcC-CCCCCCCCEE-EcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHh
Q 020161          223 --GFEEC-IALEELYLSHNGISKMEG-LSTLVNLHVL-DVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVA  295 (330)
Q Consensus       223 --~~~~~-~~L~~l~l~~~~~~~~~~-~~~~~~L~~L-~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~  295 (330)
                        .+..+ ..++.+++.+|.++.++. .....++.++ .+++|+++.+  ..+..+++|++|++++|+++.++   +..+
T Consensus       145 ~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~---~~~~  221 (242)
T d1xwdc1         145 RNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP---SYGL  221 (242)
T ss_dssp             TTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCC---SSSC
T ss_pred             ccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccC---HHHH
Confidence              23333 466777777777776532 3334455444 4567778777  34677888888888888888765   3446


Q ss_pred             ccccccchhhccC
Q 020161          296 GSRETLTTIYLEN  308 (330)
Q Consensus       296 ~~~~~L~~l~l~~  308 (330)
                      .++++|+.+++.+
T Consensus       222 ~~l~~L~~l~~~~  234 (242)
T d1xwdc1         222 ENLKKLRARSTYN  234 (242)
T ss_dssp             TTCCEEESSSEES
T ss_pred             cCCcccccCcCCC
Confidence            7777787776654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=1.1e-14  Score=121.41  Aligned_cols=169  Identities=15%  Similarity=0.170  Sum_probs=106.4

Q ss_pred             cCCCcEEEccCCCCCC--cccccCCCCccEEEcCCc-cccc--c-ccccCCCCCcEEECcCC-Ccccc-----ccCCCCc
Q 020161          140 TDTLKELYVSKNEVPK--MEEIEHFHDLQILEFGSN-RLRV--M-ENLQNLTNLQELWLGRN-RIKVV-----NLCGLKC  207 (330)
Q Consensus       140 ~~~L~~L~l~~~~~~~--~~~~~~~~~L~~L~l~~~-~~~~--~-~~l~~~~~L~~L~l~~~-~i~~~-----~~~~~~~  207 (330)
                      +++|++|++.+|.+.+  +..+..+++|++|+++++ .++.  + .-...+++|++|+++++ .+.+.     ....++.
T Consensus        70 c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~  149 (284)
T d2astb2          70 CSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET  149 (284)
T ss_dssp             BCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTT
T ss_pred             CCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccc
Confidence            4555555555554433  234556666777777664 3331  1 12345677788887775 34332     1223467


Q ss_pred             ccEEECCCCc--cccc--c-ccccccccceEEccCCC-CCC--CcCCCCCCCCCEEEcCCC-CCCCc--cccccCCCCCe
Q 020161          208 IKKISLQSNR--LTSM--K-GFEECIALEELYLSHNG-ISK--MEGLSTLVNLHVLDVSSN-KLTLV--DDIQNLSRLED  276 (330)
Q Consensus       208 L~~L~l~~~~--l~~~--~-~~~~~~~L~~l~l~~~~-~~~--~~~~~~~~~L~~L~l~~n-~~~~~--~~~~~~~~L~~  276 (330)
                      |+.|+++++.  ++..  . ....|++|++|++++|. +++  +..+..+++|++|++++| .+++.  ..+..+++|+.
T Consensus       150 L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~  229 (284)
T d2astb2         150 ITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKT  229 (284)
T ss_dssp             CCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCE
T ss_pred             cchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCE
Confidence            8888887652  3322  1 23568899999998864 553  456778899999999996 56654  56788999999


Q ss_pred             EeCCCCCCCchHHHHHHHhccccccchhhccCCCcccc
Q 020161          277 LWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       277 L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      |++++| +++  +.+..+...+|+|+   +..+++++.
T Consensus       230 L~l~~~-~~d--~~l~~l~~~lp~L~---i~~~~ls~~  261 (284)
T d2astb2         230 LQVFGI-VPD--GTLQLLKEALPHLQ---INCSHFTTI  261 (284)
T ss_dssp             EECTTS-SCT--TCHHHHHHHSTTSE---ESCCCSCCT
T ss_pred             EeeeCC-CCH--HHHHHHHHhCcccc---ccCccCCCC
Confidence            999998 443  33455566677766   455555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.54  E-value=3e-14  Score=111.57  Aligned_cols=126  Identities=24%  Similarity=0.321  Sum_probs=100.4

Q ss_pred             CCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCC-hhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           25 SNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTS-LDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        25 ~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~-l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      +.++++++++.+..+|. ..++++++|++++|.|+. ++. .|.++++|+.|++++|.+....   ...+..+++|++|+
T Consensus         9 ~~~~v~Cs~~~L~~iP~-~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~---~~~~~~~~~L~~L~   84 (192)
T d1w8aa_           9 EGTTVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIE---PNAFEGASHIQELQ   84 (192)
T ss_dssp             ETTEEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBC---TTTTTTCTTCCEEE
T ss_pred             cCCEEEEeCCCcCccCC-CCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccc---ccccccccccceee
Confidence            35678999999999986 567899999999999975 434 4789999999999999988863   34567789999999


Q ss_pred             ccCCcCcCCCC--CCCCCcccEEEccCCCCcCcccccc-ccCCCcEEEccCCCCC
Q 020161          103 LRDNKLMKIPD--VSIFKKLSVFDVSFNEITSSHGLSN-VTDTLKELYVSKNEVP  154 (330)
Q Consensus       103 l~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~  154 (330)
                      +++|.++.+++  +..+++|++|++++|.+..+++..+ .+++|+++++++|.+.
T Consensus        85 Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          85 LGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             eccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            99999998775  7788999999999999888766433 3566666666666544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=3.6e-15  Score=127.97  Aligned_cols=242  Identities=21%  Similarity=0.234  Sum_probs=113.3

Q ss_pred             hhhhcCCCCCEEeCCCCcCCccccccch-hhcccCCCcEEEccCCcCcCCC------------CCCCCCcccEEEccCCC
Q 020161           63 SRISHLSNLKKLSLRQNLIDDAAIEPIS-RWDALAGLEELILRDNKLMKIP------------DVSIFKKLSVFDVSFNE  129 (330)
Q Consensus        63 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~------------~~~~~~~L~~L~l~~~~  129 (330)
                      ..+..+..|+.|++++|.+.......+. .+...+.|+.++++++......            .+..+++|+.|++++|.
T Consensus        25 ~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~  104 (344)
T d2ca6a1          25 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA  104 (344)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC
T ss_pred             HHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccccc
Confidence            3355566666666666665554333322 2344566666666655433211            12345566666666665


Q ss_pred             CcCc-----cccccccCCCcEEEccCCCCCCcc--cccCCCCccEEEcCCccccccccccCCCCCcEEECcCCCcccc--
Q 020161          130 ITSS-----HGLSNVTDTLKELYVSKNEVPKME--EIEHFHDLQILEFGSNRLRVMENLQNLTNLQELWLGRNRIKVV--  200 (330)
Q Consensus       130 ~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--  200 (330)
                      +...     ......+++|+.|++++|.+....  .+..  .+..       ..........+.|+.+.++.+.+.+.  
T Consensus       105 i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~--~l~~-------~~~~~~~~~~~~L~~l~l~~n~i~~~~~  175 (344)
T d2ca6a1         105 FGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--ALQE-------LAVNKKAKNAPPLRSIICGRNRLENGSM  175 (344)
T ss_dssp             CCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--HHHH-------HHHHHHHHTCCCCCEEECCSSCCTGGGH
T ss_pred             cccccccchhhhhcccccchheecccccccccccccccc--cccc-------cccccccccCcccceeeccccccccccc
Confidence            5432     111122455666666666543210  0000  0000       00000012234455555555544332  


Q ss_pred             -----ccCCCCcccEEECCCCccccc-------cccccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCC
Q 020161          201 -----NLCGLKCIKKISLQSNRLTSM-------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKL  262 (330)
Q Consensus       201 -----~~~~~~~L~~L~l~~~~l~~~-------~~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~  262 (330)
                           .+...+.++.+++++|.++..       ..+..+++|+.|++++|.++..      ..+..+++|++|++++|.+
T Consensus       176 ~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i  255 (344)
T d2ca6a1         176 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL  255 (344)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCC
T ss_pred             ccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCcc
Confidence                 123334555555555555432       1234555666666666655431      2345556666666666666


Q ss_pred             CCc------cccc--cCCCCCeEeCCCCCCCchH--HHHHHHhccccccchhhccCCCccc
Q 020161          263 TLV------DDIQ--NLSRLEDLWLNDNQIESLE--SIVEAVAGSRETLTTIYLENNPCKI  313 (330)
Q Consensus       263 ~~~------~~~~--~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~~L~~l~l~~n~~~~  313 (330)
                      ++.      ..+.  ..+.|+.|++++|+|+..+  .....+..++++|+.|++++|.+..
T Consensus       256 ~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         256 SARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             CHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             CchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            543      1122  2245666666666665321  1111222345666666666666543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.2e-14  Score=110.41  Aligned_cols=126  Identities=21%  Similarity=0.311  Sum_probs=104.7

Q ss_pred             ccCCCCcccEEECCCCcccccccc-ccccccceEEccCCCCCCCcCCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeE
Q 020161          201 NLCGLKCIKKISLQSNRLTSMKGF-EECIALEELYLSHNGISKMEGLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDL  277 (330)
Q Consensus       201 ~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L  277 (330)
                      .+..+.+++.|++++|+++..+.+ ..++.|+.|++++|.++.++++..+++|++|++++|+++.+  ..+..+++|+.|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccc
Confidence            355667899999999999988654 56899999999999999999999999999999999999988  335689999999


Q ss_pred             eCCCCCCCchHHHHHHHhccccccchhhccCCCccccccc-cccccCCCCCC
Q 020161          278 WLNDNQIESLESIVEAVAGSRETLTTIYLENNPCKIFKLF-CYPQTNFPKYT  328 (330)
Q Consensus       278 ~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~~~~~~-~~~~~~~p~~~  328 (330)
                      ++++|+++++++.  ..+..+++|+.+++++|++...+.+ .+.-+++|.++
T Consensus        93 ~L~~N~i~~~~~l--~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~  142 (162)
T d1a9na_          93 ILTNNSLVELGDL--DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVR  142 (162)
T ss_dssp             ECCSCCCCCGGGG--GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCS
T ss_pred             eeccccccccccc--cccccccccchhhcCCCccccccchHHHHHHHCCCcC
Confidence            9999999987642  3467899999999999998776532 23445567654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.49  E-value=5.8e-14  Score=109.95  Aligned_cols=142  Identities=23%  Similarity=0.309  Sum_probs=109.0

Q ss_pred             ccEEEcCCccccc-cccccCCCCCcEEECcCCCcccc----ccCCCCcccEEECCCCccccc--cccccccccceEEccC
Q 020161          165 LQILEFGSNRLRV-MENLQNLTNLQELWLGRNRIKVV----NLCGLKCIKKISLQSNRLTSM--KGFEECIALEELYLSH  237 (330)
Q Consensus       165 L~~L~l~~~~~~~-~~~l~~~~~L~~L~l~~~~i~~~----~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~L~~l~l~~  237 (330)
                      .+.++.+++.++. |.++.  +.+++|++++|.+...    .|..+++|+.|++++|.+...  ..+...+.|+.|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4678888888764 44443  5799999999988653    567889999999999988877  4577889999999999


Q ss_pred             CCCCCCc--CCCCCCCCCEEEcCCCCCCCc--cccccCCCCCeEeCCCCCCCchHHHHHHHhccccccchhhccCCCcc
Q 020161          238 NGISKME--GLSTLVNLHVLDVSSNKLTLV--DDIQNLSRLEDLWLNDNQIESLESIVEAVAGSRETLTTIYLENNPCK  312 (330)
Q Consensus       238 ~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~L~~l~l~~n~~~  312 (330)
                      |.++.++  .|.++++|++|+|++|+++.+  ..+..+++|+++++++|++....+. ..+.   ..++...+..+.++
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~-~~~~---~~l~~~~l~~~~~~  162 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL-AWFA---EWLRKKSLNGGAAR  162 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG-HHHH---HHHHHHCCSGGGCB
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccch-HHHh---hhhhhhcccCCCeE
Confidence            9999874  588899999999999999987  5678899999999999998754322 1111   23555556555543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=9.5e-14  Score=115.57  Aligned_cols=188  Identities=19%  Similarity=0.231  Sum_probs=106.6

Q ss_pred             CcEEeccCcccccC-CCCCCCCCcCEEecCCCCCC--ChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           26 NTVLDLTSFQLHDL-DSVEFPTNLTELDLTANRLT--SLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        26 l~~l~l~~~~l~~~-~~~~~~~~L~~L~l~~~~i~--~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      ...+.+........ .....+.+|++|++++|.+.  .+...+.++++|++|+++++.+.+.   .+..+..+++|++|+
T Consensus        25 ~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~---~~~~l~~~~~L~~L~  101 (284)
T d2astb2          25 VIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP---IVNTLAKNSNLVRLN  101 (284)
T ss_dssp             CSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHH---HHHHHTTCTTCSEEE
T ss_pred             ceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcH---HHHHHhcCCCCcCcc
Confidence            44555555444432 22234568999999998876  3555578899999999999887765   334556688899999


Q ss_pred             ccCC-cCcC--CCC-CCCCCcccEEEccCCCC-cC--cccc-ccccCCCcEEEccCCC--CCC--cc-cccCCCCccEEE
Q 020161          103 LRDN-KLMK--IPD-VSIFKKLSVFDVSFNEI-TS--SHGL-SNVTDTLKELYVSKNE--VPK--ME-EIEHFHDLQILE  169 (330)
Q Consensus       103 l~~~-~l~~--~~~-~~~~~~L~~L~l~~~~~-~~--~~~~-~~~~~~L~~L~l~~~~--~~~--~~-~~~~~~~L~~L~  169 (330)
                      +++| .++.  +.. +..+++|++|++++|.. +.  +... ...++.|+.|+++++.  +..  +. .+..+++|++|+
T Consensus       102 Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~  181 (284)
T d2astb2         102 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD  181 (284)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred             ccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccc
Confidence            9886 4542  222 34567888888877643 21  1111 1224567777776642  221  11 123455666666


Q ss_pred             cCCcc-cc--ccccccCCCCCcEEECcCC-Ccccc---ccCCCCcccEEECCCC
Q 020161          170 FGSNR-LR--VMENLQNLTNLQELWLGRN-RIKVV---NLCGLKCIKKISLQSN  216 (330)
Q Consensus       170 l~~~~-~~--~~~~l~~~~~L~~L~l~~~-~i~~~---~~~~~~~L~~L~l~~~  216 (330)
                      +++|. ++  .+..+..+++|++|++++| .+++.   .+..+++|+.|++.++
T Consensus       182 L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            65543 32  3344455555666665553 33332   2333444555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.45  E-value=8.6e-14  Score=119.21  Aligned_cols=238  Identities=21%  Similarity=0.257  Sum_probs=149.6

Q ss_pred             CCCcCEEecCCCCCCC-----hhhhhhcCCCCCEEeCCCCcCCccccc---c----chhhcccCCCcEEEccCCcCcCCC
Q 020161           45 PTNLTELDLTANRLTS-----LDSRISHLSNLKKLSLRQNLIDDAAIE---P----ISRWDALAGLEELILRDNKLMKIP  112 (330)
Q Consensus        45 ~~~L~~L~l~~~~i~~-----l~~~~~~l~~L~~L~l~~~~~~~~~~~---~----~~~~~~~~~L~~L~l~~~~l~~~~  112 (330)
                      ...+++|++++|.+..     +...+..+++|+.++++++........   .    ...+..+++|+.|++++|.++...
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            4778888888887762     333466788999999887654432211   1    122456788999999999877522


Q ss_pred             -----C-CCCCCcccEEEccCCCCcCccccccccCCCcEEEccCCCCCCcccccCCCCccEEEcCCccccc------ccc
Q 020161          113 -----D-VSIFKKLSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKMEEIEHFHDLQILEFGSNRLRV------MEN  180 (330)
Q Consensus       113 -----~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~  180 (330)
                           . +...++|++|++++|.+...... .....+..+..       .......+.++.+.++.+.++.      ...
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~-~l~~~l~~~~~-------~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~  181 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGA-KIARALQELAV-------NKKAKNAPPLRSIICGRNRLENGSMKEWAKT  181 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHH-HHHHHHHHHHH-------HHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred             ccchhhhhcccccchheecccccccccccc-ccccccccccc-------ccccccCcccceeecccccccccccccccch
Confidence                 1 34578999999999987532100 00000000000       0011233455566666555431      122


Q ss_pred             ccCCCCCcEEECcCCCcccc--------ccCCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC---
Q 020161          181 LQNLTNLQELWLGRNRIKVV--------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM---  243 (330)
Q Consensus       181 l~~~~~L~~L~l~~~~i~~~--------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~---  243 (330)
                      +..++.+++|+++.|.+...        .+...++|+.|++++|.++..      ..+..+++|++|++++|.+++.   
T Consensus       182 l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~  261 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAA  261 (344)
T ss_dssp             HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhH
Confidence            44556777777777766542        345567788888888876543      2466788899999999988752   


Q ss_pred             ---cCCC--CCCCCCEEEcCCCCCCCc------ccc-ccCCCCCeEeCCCCCCCchHHH
Q 020161          244 ---EGLS--TLVNLHVLDVSSNKLTLV------DDI-QNLSRLEDLWLNDNQIESLESI  290 (330)
Q Consensus       244 ---~~~~--~~~~L~~L~l~~n~~~~~------~~~-~~~~~L~~L~l~~n~l~~~~~~  290 (330)
                         +.+.  ....|++|++++|+++..      ..+ ..+++|+.|++++|.+...+..
T Consensus       262 ~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~~~~~  320 (344)
T d2ca6a1         262 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDV  320 (344)
T ss_dssp             HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHH
T ss_pred             HHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCCcchH
Confidence               2222  346799999999998754      223 3578999999999999864433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=2.9e-13  Score=106.12  Aligned_cols=125  Identities=26%  Similarity=0.386  Sum_probs=92.0

Q ss_pred             CCcCEEecCCC--CCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEccCCcCcCCCCC-CCCCcccE
Q 020161           46 TNLTELDLTAN--RLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELILRDNKLMKIPDV-SIFKKLSV  122 (330)
Q Consensus        46 ~~L~~L~l~~~--~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~L~~  122 (330)
                      ..++.+++++.  .+..++..+..+++|++|++++|.+...     ..+..+++|++|++++|.++.++.+ ..+++|++
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i-----~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~   97 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI-----SSLSGMENLRILSLGRNLIKKIENLDAVADTLEE   97 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC-----CCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCE
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCc-----ccccCCccccChhhcccccccccccccccccccc
Confidence            34555566554  4667777888899999999999888764     2366788899999999988888763 34567888


Q ss_pred             EEccCCCCcCccccccccCCCcEEEccCCCCCCc---ccccCCCCccEEEcCCcccc
Q 020161          123 FDVSFNEITSSHGLSNVTDTLKELYVSKNEVPKM---EEIEHFHDLQILEFGSNRLR  176 (330)
Q Consensus       123 L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~L~~L~l~~~~~~  176 (330)
                      |++++|.+..++. ...+++|+.|++++|.+..+   ..+..+++|+.|++++|++.
T Consensus        98 L~l~~N~i~~l~~-~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_          98 LWISYNQIASLSG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             EECSEEECCCHHH-HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccccccccccccc-ccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence            8888888776643 33467788888888877764   34677788888888887663

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=1.1e-13  Score=108.60  Aligned_cols=133  Identities=30%  Similarity=0.418  Sum_probs=85.2

Q ss_pred             cccCCCCCcEEECcCCCcccc-ccCCCCcccEEECCCCcccccccc-ccccccceEEccCCCCCCCcCCCCCCCCCEEEc
Q 020161          180 NLQNLTNLQELWLGRNRIKVV-NLCGLKCIKKISLQSNRLTSMKGF-EECIALEELYLSHNGISKMEGLSTLVNLHVLDV  257 (330)
Q Consensus       180 ~l~~~~~L~~L~l~~~~i~~~-~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~~~L~~L~l  257 (330)
                      .+..+++|++|++++|.+... .+..+++|+.|++++|.++..+.+ ..++.|+.|++++|.++.++.+..+++|+.|++
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~~~~l~~L~~L~L  122 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYM  122 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHHHHHHHHSSEEEE
T ss_pred             HHhcccccceeECcccCCCCcccccCCccccChhhccccccccccccccccccccccccccccccccccccccccccccc
Confidence            344555666666666655554 445556666666666666655443 334567788888887777766667778888888


Q ss_pred             CCCCCCCc---cccccCCCCCeEeCCCCCCCchHH-------HHHHHhccccccchhhccCCCcccc
Q 020161          258 SSNKLTLV---DDIQNLSRLEDLWLNDNQIESLES-------IVEAVAGSRETLTTIYLENNPCKIF  314 (330)
Q Consensus       258 ~~n~~~~~---~~~~~~~~L~~L~l~~n~l~~~~~-------~~~~~~~~~~~L~~l~l~~n~~~~~  314 (330)
                      ++|+++.+   ..+..+++|+.|++++|++.....       .-..++..+|+|+.||  +.+++..
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD--~~~I~~~  187 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDVD  187 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES--SGGGTTT
T ss_pred             ccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC--CccCCHH
Confidence            88888766   346777888888888887653311       1123356678888754  6665443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=9.9e-11  Score=87.69  Aligned_cols=103  Identities=21%  Similarity=0.119  Sum_probs=71.4

Q ss_pred             cEEeccCcccccCCC-CCCCCCcCEEecCCC-CCCChhh-hhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEEc
Q 020161           27 TVLDLTSFQLHDLDS-VEFPTNLTELDLTAN-RLTSLDS-RISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELIL  103 (330)
Q Consensus        27 ~~l~l~~~~l~~~~~-~~~~~~L~~L~l~~~-~i~~l~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~l  103 (330)
                      ..++++++.+...+. +...+++++|+++++ .++.++. .|.++++|+.|++++|.+..+.   ..+|..+++|++|+|
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~---~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA---PDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC---TTGGGSCSCCCEEEC
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc---cccccccccccceec
Confidence            456777766666543 344577888888665 4777765 3777888888888888877763   345667788888888


Q ss_pred             cCCcCcCCCC-CCCCCcccEEEccCCCCcC
Q 020161          104 RDNKLMKIPD-VSIFKKLSVFDVSFNEITS  132 (330)
Q Consensus       104 ~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~  132 (330)
                      ++|.++.++. .....+|++|++++|.+..
T Consensus        88 s~N~l~~l~~~~~~~~~l~~L~L~~Np~~C  117 (156)
T d2ifga3          88 SFNALESLSWKTVQGLSLQELVLSGNPLHC  117 (156)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred             cCCCCcccChhhhccccccccccCCCcccC
Confidence            8888887765 3344567778887777754

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.8e-10  Score=84.42  Aligned_cols=109  Identities=19%  Similarity=0.209  Sum_probs=92.7

Q ss_pred             CCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCC-cCCccccccchhhcccCCCcEEEccCCcCcCCCC--CCCCCc
Q 020161           43 EFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQN-LIDDAAIEPISRWDALAGLEELILRDNKLMKIPD--VSIFKK  119 (330)
Q Consensus        43 ~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~  119 (330)
                      ..+....+++++++++...|..+..+++|++|+++++ .++..   ....|..+++|+.|++++|.++.+++  +..+++
T Consensus         5 C~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i---~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~   81 (156)
T d2ifga3           5 CCPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHL---ELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR   81 (156)
T ss_dssp             SCCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEE---CGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSC
T ss_pred             CCcCCCCeEEecCCCCccCcccccCccccCeeecCCCcccccc---CchhhccccccCcceeeccccCCccccccccccc
Confidence            3455677899999999988888999999999999766 57776   34567889999999999999998865  788999


Q ss_pred             ccEEEccCCCCcCccccccccCCCcEEEccCCCCC
Q 020161          120 LSVFDVSFNEITSSHGLSNVTDTLKELYVSKNEVP  154 (330)
Q Consensus       120 L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~~~  154 (330)
                      |++|++++|++..++........++.|++++|.+.
T Consensus        82 L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            99999999999988876666667999999999874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.25  E-value=3.1e-07  Score=68.95  Aligned_cols=37  Identities=27%  Similarity=0.420  Sum_probs=18.0

Q ss_pred             CCCCCcEEECcCC-Ccccc-------ccCCCCcccEEECCCCccc
Q 020161          183 NLTNLQELWLGRN-RIKVV-------NLCGLKCIKKISLQSNRLT  219 (330)
Q Consensus       183 ~~~~L~~L~l~~~-~i~~~-------~~~~~~~L~~L~l~~~~l~  219 (330)
                      +.+.|++|+++++ .++..       .+...+.+++|++++|.++
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~   57 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS   57 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccc
Confidence            3455666666542 34332       2334445555555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=3.4e-07  Score=68.38  Aligned_cols=81  Identities=25%  Similarity=0.412  Sum_probs=59.2

Q ss_pred             ccccccceEEccCCCCCCCcCC----CCCCCCCEEEcCCCCCCCcccc--ccCCCCCeEeCCCCCCCch----HHHHHHH
Q 020161          225 EECIALEELYLSHNGISKMEGL----STLVNLHVLDVSSNKLTLVDDI--QNLSRLEDLWLNDNQIESL----ESIVEAV  294 (330)
Q Consensus       225 ~~~~~L~~l~l~~~~~~~~~~~----~~~~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~----~~~~~~~  294 (330)
                      ..++.|+.|++++|.++.++.+    ..+++|+.|++++|.++.++.+  ....+|+.+++.+|++...    ......+
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            4577888888888888876543    3578888889999988887432  2345688889999988642    3455667


Q ss_pred             hccccccchhh
Q 020161          295 AGSRETLTTIY  305 (330)
Q Consensus       295 ~~~~~~L~~l~  305 (330)
                      +..+|+|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            78888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3.3e-08  Score=74.10  Aligned_cols=107  Identities=19%  Similarity=0.076  Sum_probs=63.0

Q ss_pred             cCCCcEEeccCcccccCCCCCCCCCcCEEecCCCCCCChhhhhhcCCCCCEEeCCCCcCCccccccchhhcccCCCcEEE
Q 020161           23 DLSNTVLDLTSFQLHDLDSVEFPTNLTELDLTANRLTSLDSRISHLSNLKKLSLRQNLIDDAAIEPISRWDALAGLEELI  102 (330)
Q Consensus        23 ~~~l~~l~l~~~~l~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~~L~~L~  102 (330)
                      ....+.|++++.+.  .+.+.....+..++...+....++..+..+++|++|++++|.++...+ ....+..+++|+.|+
T Consensus        21 ~~~~~~Ldls~l~~--~~~l~~~~~~~~l~~~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~-~~~~~~~l~~L~~L~   97 (162)
T d1koha1          21 DGSQQALDLKGLRS--DPDLVAQNIDVVLNRRSSMAATLRIIEENIPELLSLNLSNNRLYRLDD-MSSIVQKAPNLKILN   97 (162)
T ss_dssp             CSSSCCBCCCCCSS--CTTTTTTTCCCCTTSHHHHHHHHHHHHHHCTTCCCCCCCSSCCCCCSG-GGTHHHHSTTCCCCC
T ss_pred             chhhCeeecccCCC--CchhhhccchhhcchhhhHhhhhHHHHHhCCCCCEeeCCCccccCCch-hHHHHhhCCcccccc
Confidence            34556666655432  122222223333333333333344445678889999999988877532 123356678888888


Q ss_pred             ccCCcCcCCCCC--CCCCcccEEEccCCCCcC
Q 020161          103 LRDNKLMKIPDV--SIFKKLSVFDVSFNEITS  132 (330)
Q Consensus       103 l~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~  132 (330)
                      +++|.++.++++  .....|+.+++.+|.+..
T Consensus        98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~  129 (162)
T d1koha1          98 LSGNELKSERELDKIKGLKLEELWLDGNSLSD  129 (162)
T ss_dssp             CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSS
T ss_pred             cccCccccchhhhhhhccccceeecCCCCcCc
Confidence            888888877652  233457777777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.08  E-value=2.7e-06  Score=63.63  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=56.0

Q ss_pred             CCcccEEECCCC-ccccc------cccccccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc------
Q 020161          205 LKCIKKISLQSN-RLTSM------KGFEECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV------  265 (330)
Q Consensus       205 ~~~L~~L~l~~~-~l~~~------~~~~~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~------  265 (330)
                      .+.|+.|+++++ .++..      ..+...+.|++|++++|.+++-      +.+...+.|++|++++|.+++.      
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            355666666553 33322      1244455666666666665531      1233445666666666666543      


Q ss_pred             cccccCCCCCeEeCCCCCCCchH----HHHHHHhccccccchhhccCCC
Q 020161          266 DDIQNLSRLEDLWLNDNQIESLE----SIVEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       266 ~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~~~~~~~L~~l~l~~n~  310 (330)
                      ..+...+.|++|++++|.+..++    ..+..++...++|+.|+++++.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            23455566666666666544331    1234445556666666665554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.88  E-value=4.3e-06  Score=62.44  Aligned_cols=85  Identities=14%  Similarity=0.103  Sum_probs=41.3

Q ss_pred             cccccceEEccCCCCCCC------cCCCCCCCCCEEEcCCCCCCCc------cccccCCCCCeEeC--CCCCCCchH-HH
Q 020161          226 ECIALEELYLSHNGISKM------EGLSTLVNLHVLDVSSNKLTLV------DDIQNLSRLEDLWL--NDNQIESLE-SI  290 (330)
Q Consensus       226 ~~~~L~~l~l~~~~~~~~------~~~~~~~~L~~L~l~~n~~~~~------~~~~~~~~L~~L~l--~~n~l~~~~-~~  290 (330)
                      ..++|++|++++|.+++.      ..+...+.++.+++++|.++..      ..+...+.|+.+++  ++|.+++-+ ..
T Consensus        44 ~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~  123 (166)
T d1io0a_          44 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME  123 (166)
T ss_dssp             TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred             cCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHH
Confidence            344455555555544431      1233445566666666655433      33445555655443  344454321 23


Q ss_pred             HHHHhccccccchhhccCCC
Q 020161          291 VEAVAGSRETLTTIYLENNP  310 (330)
Q Consensus       291 ~~~~~~~~~~L~~l~l~~n~  310 (330)
                      +..++..+++|+.|+++++.
T Consensus       124 La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_         124 IANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHHHhCCCcCEEeCcCCC
Confidence            34445556666666666554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.54  E-value=2.4e-05  Score=58.17  Aligned_cols=103  Identities=23%  Similarity=0.169  Sum_probs=68.2

Q ss_pred             CCCCCcEEECcC-CCcccc-------ccCCCCcccEEECCCCccccc------cccccccccceEEccCCCCCCC-----
Q 020161          183 NLTNLQELWLGR-NRIKVV-------NLCGLKCIKKISLQSNRLTSM------KGFEECIALEELYLSHNGISKM-----  243 (330)
Q Consensus       183 ~~~~L~~L~l~~-~~i~~~-------~~~~~~~L~~L~l~~~~l~~~------~~~~~~~~L~~l~l~~~~~~~~-----  243 (330)
                      +.+.|++|++++ +.+++.       .+...+.|++|++++|.++..      ..+...+.++.+++++|.+++-     
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            445666666665 344433       344556677777777766544      2345667888888888877652     


Q ss_pred             -cCCCCCCCCCEEEcC--CCCCCCc------cccccCCCCCeEeCCCCCCC
Q 020161          244 -EGLSTLVNLHVLDVS--SNKLTLV------DDIQNLSRLEDLWLNDNQIE  285 (330)
Q Consensus       244 -~~~~~~~~L~~L~l~--~n~~~~~------~~~~~~~~L~~L~l~~n~l~  285 (330)
                       ..+...++|+.++++  +|.++..      ..+..++.|+.|++..+...
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~~  145 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  145 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCCc
Confidence             456777888876664  5567643      45678899999999887654