Citrus Sinensis ID: 020189

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRFLLTLNS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHccHHHHHHccccHHHHHHHHHcccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHccccEEHHHHHHHHHHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHcHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEcccccccccccEcccHHEEEEEEHccccEcccccccHHHHHHHHHHHHcccccHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEHHHHHHHHHHcccHHHEEEHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcc
Coil and Loop (DISEMBL)
MYGTQSKRDLALELQAqipflrpsiharrANITVKFqdlygftvegnvddvnVLNEVREKVREQGRVWWALEAskganwylqpqiaSISEGIALKSSLKLSSLANAITLKKLIrkgippvlrpkvwfslsgaakkkstvpesyyndltkavegkvtpatkqidhdlprtfpghpwldtpdghaTLRRVLVGYsfrdsdvgycQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVndcytnnlsgchvEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLfskslpsettlRVWDVLFYEGAKVLFHVALAIFKVRFLLTLNS
Flexible Loop (DISEMBL)
mygtqskrdLALELQAQipflrpsihaRRANITVKFQDLYGFtvegnvddvnvLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKklirkgippvlrPKVWFslsgaakkkstvpesyynDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRFLLTLNS
Low Complexity Region (SEG)
MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIAlksslklsslANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRFLLTLNS
Disordered region (IsUnstruct)
***********LELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAK****VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRFLLTL**
Disordered Region (DISOPRED)
**************************************LYGFTVEGN*****************************ANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLT*********ATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRFLLTLN*
Disordered Region (DISEMBL)
********DLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRFLLTLNS
Disordered Region (DISPRO)
*****SKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRFLLT***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRFLLTLNS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q9BYX2	928	TBC1 domain family member	yes	no	0.668	0.237	0.426	1e-44
B1AVH7	922	TBC1 domain family member	yes	no	0.668	0.238	0.417	4e-43
B5DFA1	924	TBC1 domain family member	no	no	0.668	0.238	0.412	3e-42
A6QP29	925	TBC1 domain family member	yes	no	0.668	0.237	0.412	6e-42
Q6ZT07	1266	TBC1 domain family member	no	no	0.653	0.169	0.410	6e-40
D2H0G5	923	TBC1 domain family member	yes	no	0.635	0.226	0.400	8e-40
Q28CB1	943	TBC1 domain family member	yes	no	0.665	0.232	0.410	9e-40
Q7T2D0	755	Small G protein signaling	no	no	0.665	0.290	0.399	1e-39
Q3UYK3	1264	TBC1 domain family member	no	no	0.653	0.170	0.406	4e-39
Q3U0J8	965	TBC1 domain family member	no	no	0.662	0.225	0.422	4e-38

>sp|Q9BYX2|TBD2A_HUMAN TBC1 domain family member 2A OS=Homo sapiens GN=TBC1D2 PE=1 SV=3

 Score =  180 bits (457), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 95/223 (42%), Positives = 133/223 (59%), Gaps = 3/223 (1%)

Query: 100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPAT 159
           L  L  +  LK+L+R G+P   RP+VW  L     +    P  Y   L++  + +  PA 
Sbjct: 609 LGDLVPSAELKQLLRAGVPREHRPRVWRWLVHLRVQHLHTPGCYQELLSRG-QAREHPAA 667

Query: 160 KQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK 217
           +QI+ DL RTFP +     P       LRRVL+ +S+++  +GYCQGLN +AA+ LLV++
Sbjct: 668 RQIELDLNRTFPNNKHFTCPTSSFPDKLRRVLLAFSWQNPTIGYCQGLNRLAAIALLVLE 727

Query: 218 TEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSL 277
            EE AFW L  ++E ++  D Y N L+   V+QRV +DLL ++ PR+ +HL     D+SL
Sbjct: 728 EEESAFWCLVAIVETIMPADYYCNTLTASQVDQRVLQDLLSEKLPRLMAHLGQHHVDLSL 787

Query: 278 VATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFK 320
           V   WFL +F+ SL S   LRVWD   YEG KV+F  ALAIFK
Sbjct: 788 VTFNWFLVVFADSLISNILLRVWDAFLYEGTKVVFRYALAIFK 830

Acts as GTPase-activating protein for RAB7A. Signal effector acting as a linker between RAC1 and RAB7A, leading to RAB7A inactivation and subsequent inhibition of cadherin degradation and reduced cell-cell adhesion.
Homo sapiens (taxid: 9606)

>sp|B1AVH7|TBD2A_MOUSE TBC1 domain family member 2A OS=Mus musculus GN=Tbc1d2 PE=2 SV=1

 Score =  175 bits (444), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 133/223 (59%), Gaps = 3/223 (1%)

Query: 100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPAT 159
           L+ L  +  LK+L+R G+P   RP+VW  L     +    P  Y   L +    +  PA 
Sbjct: 603 LTELTPSAELKQLLRAGVPREHRPRVWRWLVHRRVRHLQAPGCYQELLARGRACE-HPAA 661

Query: 160 KQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK 217
           +QI+ DL RTFP +     P       LRRVL+ +S+++  +GYCQGLN +AA+ LLV++
Sbjct: 662 RQIELDLNRTFPTNKHFTCPTSSFPDKLRRVLLAFSWQNPTIGYCQGLNRLAAIALLVLE 721

Query: 218 TEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSL 277
            EE AFW L  ++E +L  + Y+  L+   V+QRV +DLL ++ PR+ +HL     D+SL
Sbjct: 722 DEESAFWCLVAIVETILPAEYYSKTLTASQVDQRVLQDLLSEKLPRLTAHLGQHRVDLSL 781

Query: 278 VATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFK 320
           +   WFL +F+ SL S+  LRVWD   YEG KV+F  ALAIFK
Sbjct: 782 ITFNWFLVVFADSLISDILLRVWDAFLYEGTKVVFRYALAIFK 824

Acts as GTPase-activating protein for RAB7A. Signal effector acting as a linker between RAC1 and RAB7A, leading to RAB7A inactivation and subsequent inhibition of cadherin degradation and reduced cell-cell adhesion.

Mus musculus (taxid: 10090)

>sp|B5DFA1|TBD2A_RAT TBC1 domain family member 2A OS=Rattus norvegicus GN=Tbc1d2 PE=2 SV=1

 Score =  172 bits (436), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 132/223 (59%), Gaps = 3/223 (1%)

Query: 100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPAT 159
           L+ L  +  LK+L+R G+P   RP+VW  L    + +       Y +L         PA 
Sbjct: 605 LTELMPSAELKQLLRAGVPREHRPRVWRWLVHR-RVQHLHSSGCYQELLARGRACEHPAA 663

Query: 160 KQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK 217
           +QI+ DL RTFP +     P       LRRVL+ +S+++  +GYCQGLN +AA+ LLV++
Sbjct: 664 RQIELDLNRTFPTNKHFTCPTSSFPDKLRRVLLAFSWQNPTIGYCQGLNRLAAIALLVLE 723

Query: 218 TEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSL 277
            EE AFW L  ++E +L  + Y+  L+   V+QRV +DLL ++ PR+ +HL     D+SL
Sbjct: 724 DEESAFWCLVAIVETILPAEYYSKTLTASQVDQRVLQDLLSEKLPRLTAHLGQRHVDLSL 783

Query: 278 VATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFK 320
           +   WFL +F+ SL S+  LRVWD   YEG KV+F  ALAIFK
Sbjct: 784 ITFNWFLVIFADSLISDILLRVWDAFLYEGTKVVFRYALAIFK 826

Acts as GTPase-activating protein for RAB7A. Signal effector acting as a linker between RAC1 and RAB7A, leading to RAB7A inactivation and subsequent inhibition of cadherin degradation and reduced cell-cell adhesion.

Rattus norvegicus (taxid: 10116)

>sp|A6QP29|TBD2A_BOVIN TBC1 domain family member 2A OS=Bos taurus GN=TBC1D2 PE=2 SV=1

 Score =  171 bits (434), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 92/223 (41%), Positives = 131/223 (58%), Gaps = 3/223 (1%)

Query: 100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPAT 159
           L  LA +  LK+L+R G+P   RP+VW  L     +    P  Y   L++    K + A 
Sbjct: 606 LGELAPSAELKQLLRAGVPHEHRPRVWRWLIRLRVQHLQAPGCYQALLSRGQACKHS-AA 664

Query: 160 KQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK 217
           +QI+ DL RTFP +     P       LRRVL+ +S+++  +GYCQGLN +AA+ LLV+ 
Sbjct: 665 RQIELDLNRTFPNNKHFTCPTSSFPDKLRRVLLAFSWQNPTIGYCQGLNRLAAIALLVLD 724

Query: 218 TEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSL 277
            EE AFW L  ++E ++  D Y+  L    V+QRV +DLL+++ PR+ +HL     D+S 
Sbjct: 725 EEESAFWCLVAIVETIMPADYYSKTLLASQVDQRVLQDLLLEKLPRLMAHLGQRHVDLSF 784

Query: 278 VATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFK 320
           +   WFL +F+ SL S   L+VWD   YEG KV+F  ALAIFK
Sbjct: 785 ITFNWFLVVFADSLISNILLQVWDAFLYEGIKVVFRYALAIFK 827

May act as a GTPase-activating protein for Rab family protein(s). Signal effector acting as a linker between RAC1 and RAB7A, leading to RAB7A inactivation and further inhibition of cadherin degradation.

Bos taurus (taxid: 9913)

>sp|Q6ZT07|TBCD9_HUMAN TBC1 domain family member 9 OS=Homo sapiens GN=TBC1D9 PE=2 SV=2

 Score =  164 bits (416), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 90/219 (41%), Positives = 130/219 (59%), Gaps = 4/219 (1%)

Query: 110 KKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRT 169
           ++L+ KGIP  +R ++W  LSGA  +K+T P  YY DL +   GK   AT++I+ DL R+
Sbjct: 509 RELVLKGIPESMRGELWLLLSGAINEKATHP-GYYEDLVEKSMGKYNLATEEIERDLHRS 567

Query: 170 FPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVL 229
            P HP      G A LRRVL  Y+FR+ ++GYCQ +N V ++LLL  K EE+AFW+L  L
Sbjct: 568 LPEHPAFQNEMGIAALRRVLTAYAFRNPNIGYCQAMNIVTSVLLLYAK-EEEAFWLLVAL 626

Query: 230 LENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSK 289
            E +L  D Y   + G  V+Q VF++L     P++   ++ L   +S ++  WFL LF  
Sbjct: 627 CERMLP-DYYNTRVVGALVDQGVFEELARDYVPQLYDCMQDLGV-ISTISLSWFLTLFLS 684

Query: 290 SLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRFLLTLN 328
            +P E+ + V D  FYEG KV+F +ALA+        LN
Sbjct: 685 VMPFESAVVVVDCFFYEGIKVIFQLALAVLDANVDKLLN 723

May act as a GTPase-activating protein for Rab family protein(s).

Homo sapiens (taxid: 9606)

>sp|D2H0G5|TBD2A_AILME TBC1 domain family member 2A OS=Ailuropoda melanoleuca GN=TBC1D2 PE=3 SV=1

 Score =  164 bits (415), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 85/212 (40%), Positives = 126/212 (59%), Gaps = 3/212 (1%)

Query: 100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPAT 159
           L  LA ++ LK+L+R G+P   RP+VW  L     +    P  +Y +L    + +  PA 
Sbjct: 615 LGDLAPSVELKQLLRAGVPREHRPRVWKWLVQLRVRHLQSP-GHYQELLSRGQVREHPAA 673

Query: 160 KQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK 217
           +QI+ DL RTFP +     P       LRRVL+ +S+++  +GYCQGLN +AA+ LLV++
Sbjct: 674 RQIELDLNRTFPNNKHFTCPTSTFPDKLRRVLLAFSWQNPTIGYCQGLNRLAAIALLVLE 733

Query: 218 TEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSL 277
            EE AFW L  ++E ++  D Y+  L+   V+QRV +DLL+++ PR+ +HL     D+S 
Sbjct: 734 EEESAFWCLVAIVETIMPADYYSKTLTSSQVDQRVLQDLLLEKLPRLMAHLGQYRVDLSF 793

Query: 278 VATEWFLCLFSKSLPSETTLRVWDVLFYEGAK 309
           +   WFL +F+ SL S   LRVWD   YEG K
Sbjct: 794 LTFNWFLVVFADSLISNILLRVWDAFLYEGTK 825

Acts as GTPase-activating protein for RAB7A. Signal effector acting as a linker between RAC1 and RAB7A, leading to RAB7A inactivation and subsequent inhibition of cadherin degradation and reduced cell-cell adhesion.

Ailuropoda melanoleuca (taxid: 9646)

>sp|Q28CB1|TBD2B_XENTR TBC1 domain family member 2B OS=Xenopus tropicalis GN=tbc1d2b PE=2 SV=1

 Score =  164 bits (415), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 92/224 (41%), Positives = 133/224 (59%), Gaps = 5/224 (2%)

Query: 103 LANAITLKKLIRKGIPPVLRPKVW--FSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATK 160
           +A +  LK L+R GIP   R ++W  F+     K K      Y+  L +    K  PA+K
Sbjct: 629 MACSPELKALVRNGIPHEHRSRMWKWFTNLHIKKLKDEAAPGYFQSLLQNALEKQNPASK 688

Query: 161 QIDHDLPRTFPGHPWLDTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKT 218
           QI+ DL RT P +    +P  +G   LR VL+ YS+R+ D+GYCQG+N +AA+ LL +  
Sbjct: 689 QIELDLMRTLPNNKHYTSPTSEGIQKLRNVLLAYSWRNPDIGYCQGINRLAAIALLYL-D 747

Query: 219 EEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLV 278
           +EDAFW L  ++E  +  D YT  L G  V+QRVFKDL+ ++ PR+ +H E    D +L+
Sbjct: 748 QEDAFWCLVTIVEAFMPRDYYTKTLLGSQVDQRVFKDLMNEKLPRLCAHFEQYKVDYTLI 807

Query: 279 ATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR 322
              WFL +F  S+ S+   R+WD L YEG+KV+F  AL +FK +
Sbjct: 808 TFNWFLVVFVDSVVSDILFRIWDSLLYEGSKVIFRFALGLFKYK 851

May act as a GTPase-activating protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q7T2D0|SGSM3_DANRE Small G protein signaling modulator 3 OS=Danio rerio GN=sgsm3 PE=2 SV=1

 Score =  164 bits (414), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 89/223 (39%), Positives = 132/223 (59%), Gaps = 4/223 (1%)

Query: 102 SLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQ 161
           +LA +  L+ L+  GIP  +RP++W  LSGA +KK T   SY  ++ K      T A KQ
Sbjct: 101 TLARSDRLRSLVLGGIPHSMRPQLWMRLSGALQKKRTSDISY-REIVKNSSNDDTTAAKQ 159

Query: 162 IDHDLPRTFPGHPWLDT--PDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTE 219
           I+ DL RT P +   +T    G   LRRVL G ++   D+GYCQG   V + LLL ++ E
Sbjct: 160 IEKDLLRTMPTNACFNTLTSVGVPKLRRVLRGLAWLYPDIGYCQGTGMVVSCLLLFLE-E 218

Query: 220 EDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVA 279
           EDA WM+  L+E++L    +++ L G   +QRV + L+V+  PR+   L+  D ++SL+ 
Sbjct: 219 EDALWMMCALIEDLLPPSYFSSTLLGVQTDQRVLRQLIVQYLPRLDKLLQEHDIELSLIT 278

Query: 280 TEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR 322
             WFL  F+  +     LR+WD+LFYEG+ VLF V L + K++
Sbjct: 279 LHWFLTAFASVVDIRILLRIWDLLFYEGSMVLFQVTLGMLKIK 321

Danio rerio (taxid: 7955)

>sp|Q3UYK3|TBCD9_MOUSE TBC1 domain family member 9 OS=Mus musculus GN=Tbc1d9 PE=2 SV=2

 Score =  162 bits (409), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 89/219 (40%), Positives = 129/219 (58%), Gaps = 4/219 (1%)

Query: 110 KKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRT 169
           ++L+ KGIP  +R ++W  LSGA  +K+T P  YY  L +   GK   AT++I+ DL R+
Sbjct: 509 RELVLKGIPESMRGELWLLLSGAINEKATHP-GYYEGLVEKSMGKYNLATEEIERDLHRS 567

Query: 170 FPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVL 229
            P HP      G A LRRVL  Y+FR+ ++GYCQ +N V ++LLL  K EE+AFW+L  L
Sbjct: 568 LPEHPAFQNEMGIAALRRVLTAYAFRNPNIGYCQAMNIVTSVLLLYAK-EEEAFWLLVAL 626

Query: 230 LENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSK 289
            E +L  D Y   + G  V+Q VF++L     P++   ++ L   +S ++  WFL LF  
Sbjct: 627 CERML-PDYYNTRVVGALVDQGVFEELARDYVPQLYDCMQDLGV-ISTISLSWFLTLFLS 684

Query: 290 SLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRFLLTLN 328
            +P E+ + V D  FYEG KV+F +ALA+        LN
Sbjct: 685 VMPFESAVVVVDCFFYEGIKVIFQLALAVLDANVDKLLN 723

May act as a GTPase-activating protein for Rab family protein(s).

Mus musculus (taxid: 10090)

>sp|Q3U0J8|TBD2B_MOUSE TBC1 domain family member 2B OS=Mus musculus GN=Tbc1d2b PE=1 SV=2

 Score =  159 bits (401), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 95/225 (42%), Positives = 133/225 (59%), Gaps = 7/225 (3%)

Query: 103 LANAITLKKLIRKGIPPVLRPKVW---FSLSGAAKKKSTVPESYYNDLTKAVEGKVTPAT 159
           +A +  LK LIR GIP   R KVW           K S  P+ +   L KA+E K  PA+
Sbjct: 651 MACSPELKNLIRAGIPHEHRSKVWKWCVDRHTRKFKDSMEPDYFQTLLQKALE-KQNPAS 709

Query: 160 KQIDHDLPRTFPGHPWLDTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK 217
           KQI+ DL RT P +    +P  +G   LR VL+ +S+R+ D+GYCQGLN + A+ LL + 
Sbjct: 710 KQIELDLLRTLPNNKHYSSPTSEGIQKLRSVLLAFSWRNPDIGYCQGLNRLVAVALLYL- 768

Query: 218 TEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSL 277
            +EDAFW L  ++E  +  D YT  L G  V+QRVF+DLL ++ PR+ +H E    D +L
Sbjct: 769 DQEDAFWCLVTIVEVFMPRDYYTKTLLGSQVDQRVFRDLLSEKLPRLHTHFEQYKVDYTL 828

Query: 278 VATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR 322
           +   WFL +F  S+ S+   ++WD   YEG KV+F  ALA+FK +
Sbjct: 829 ITFNWFLVVFVDSVVSDILFKIWDSFLYEGPKVIFRFALALFKYK 873

May act as a GTPase-activating protein.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
449441672	395	PREDICTED: TBC1 domain family member 2A-	0.969	0.807	0.934	1e-178
255583042	398	conserved hypothetical protein [Ricinus	0.978	0.809	0.906	1e-176
224131770	399	predicted protein [Populus trichocarpa]	0.978	0.807	0.897	1e-174
225446987	398	PREDICTED: TBC1 domain family member 2A	0.978	0.809	0.903	1e-174
297833578	400	RabGAP/TBC domain-containing protein [Ar	0.978	0.805	0.885	1e-172
18398086	400	RabGAP/TBC domain-containing protein [Ar	0.978	0.805	0.888	1e-172
224068867	399	predicted protein [Populus trichocarpa]	0.978	0.807	0.885	1e-171
224113351	399	predicted protein [Populus trichocarpa]	0.978	0.807	0.881	1e-171
356499495	395	PREDICTED: TBC1 domain family member 2A-	0.969	0.807	0.872	1e-168
356554560	395	PREDICTED: TBC1 domain family member 2A-	0.969	0.807	0.875	1e-167

>gi|449441672|ref|XP_004138606.1| PREDICTED: TBC1 domain family member 2A-like [Cucumis sativus] gi|449490052|ref|XP_004158494.1| PREDICTED: TBC1 domain family member 2A-like [Cucumis sativus]

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 301/322 (93%), Positives = 314/322 (97%), Gaps = 3/322 (0%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           M+GTQSKRD+ALELQAQIP LRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct: 1   MFGTQSKRDIALELQAQIPILRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEASKGANWYLQP   S+SEGIALKSSLKLS+LANAITLKKLI KGIPPV
Sbjct: 61  VRQQGRVWWALEASKGANWYLQP---SVSEGIALKSSLKLSTLANAITLKKLISKGIPPV 117

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKKKSTVP+SYYNDLTKAVEGKVTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct: 118 LRPKVWFSLSGAAKKKSTVPDSYYNDLTKAVEGKVTPATRQIDHDLPRTFPGHPWLDTPE 177

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV+DCYT
Sbjct: 178 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVSDCYT 237

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
            NLSGCHVEQRVFKDLL K+CPRIA+HLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW
Sbjct: 238 TNLSGCHVEQRVFKDLLTKKCPRIAAHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 297

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           DVLFYEGAKVLFHVALAIFK++
Sbjct: 298 DVLFYEGAKVLFHVALAIFKMK 319

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583042|ref|XP_002532289.1| conserved hypothetical protein [Ricinus communis] gi|223528023|gb|EEF30104.1| conserved hypothetical protein [Ricinus communis]

 Score =  622 bits (1604), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 292/322 (90%), Positives = 311/322 (96%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           MY T +KR+++L+ Q QIP LRPSIH+RRAN+TVKFQDLYGFTVEGNVDDVN+LNEVREK
Sbjct: 1   MYKTHTKREVSLDFQPQIPILRPSIHSRRANLTVKFQDLYGFTVEGNVDDVNILNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEASKGANWYLQPQ+ SI+EGIALKSSLKLS+LANAITLK+LIRKGIPPV
Sbjct: 61  VRQQGRVWWALEASKGANWYLQPQVTSIAEGIALKSSLKLSTLANAITLKRLIRKGIPPV 120

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGK+T ATKQIDHDLPRTFPGHPWLDTP+
Sbjct: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKITAATKQIDHDLPRTFPGHPWLDTPE 180

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT
Sbjct: 181 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
           NNLSGCHVEQRVFKDLL KQCPRIA HLE L+FDVSLVATEWFLCLFSKSLPSETTLRVW
Sbjct: 241 NNLSGCHVEQRVFKDLLPKQCPRIAVHLEELEFDVSLVATEWFLCLFSKSLPSETTLRVW 300

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           DVLF+EGAKVLFHVALAIFK++
Sbjct: 301 DVLFFEGAKVLFHVALAIFKMK 322

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131770|ref|XP_002321174.1| predicted protein [Populus trichocarpa] gi|222861947|gb|EEE99489.1| predicted protein [Populus trichocarpa]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 289/322 (89%), Positives = 310/322 (96%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           MY T S+R+ A+E Q QI  LRPSIH+RRANI VKFQDLYGFTVEGNVDDVN+LNEVREK
Sbjct: 1   MYQTHSQREFAIEFQPQIHILRPSIHSRRANIVVKFQDLYGFTVEGNVDDVNILNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEASKGANWYLQPQ++S++EGIALKSSLKLS+L NAITLK+LIRKGIPPV
Sbjct: 61  VRQQGRVWWALEASKGANWYLQPQVSSLTEGIALKSSLKLSNLTNAITLKRLIRKGIPPV 120

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKKKSTVPESYY+DLTKAVEGKVT ATKQIDHDLPRTFPGHPWLDTP+
Sbjct: 121 LRPKVWFSLSGAAKKKSTVPESYYSDLTKAVEGKVTAATKQIDHDLPRTFPGHPWLDTPE 180

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV+DCYT
Sbjct: 181 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVSDCYT 240

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
           NNLSGCHVEQRVF+DLLVK+CPRIA+HLE L+FDVSLVATEWFLCLFSKSLPSETTLRVW
Sbjct: 241 NNLSGCHVEQRVFQDLLVKKCPRIATHLEELEFDVSLVATEWFLCLFSKSLPSETTLRVW 300

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           DVLFYEGAKVLFHVALAIFK++
Sbjct: 301 DVLFYEGAKVLFHVALAIFKMK 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446987|ref|XP_002266264.1| PREDICTED: TBC1 domain family member 2A [Vitis vinifera] gi|297739137|emb|CBI28788.3| unnamed protein product [Vitis vinifera]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 291/322 (90%), Positives = 309/322 (95%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           M+GTQS RD++ E Q+QIP  RPSI+ RRANITVKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct: 1   MFGTQSTRDISFEFQSQIPNWRPSIYTRRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEA+KGANWYLQPQI+SISEGIALKSSLKLS+L N ITLK+LIRKGIPPV
Sbjct: 61  VRQQGRVWWALEANKGANWYLQPQISSISEGIALKSSLKLSALTNTITLKRLIRKGIPPV 120

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKK+STVPESYYNDLTKAVEGKVT AT+QIDHDLPRTFPGHPWLDT +
Sbjct: 121 LRPKVWFSLSGAAKKRSTVPESYYNDLTKAVEGKVTAATRQIDHDLPRTFPGHPWLDTSE 180

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT
Sbjct: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
           NNLSGCHVEQRVFKDLL K+CPRIA+HLEAL+FDVSLVATEWFLCLFSKSLPSET LRVW
Sbjct: 241 NNLSGCHVEQRVFKDLLAKKCPRIAAHLEALEFDVSLVATEWFLCLFSKSLPSETALRVW 300

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           DVLF EGAKVLFHVALAIFK++
Sbjct: 301 DVLFNEGAKVLFHVALAIFKMK 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833578|ref|XP_002884671.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330511|gb|EFH60930.1| RabGAP/TBC domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  610 bits (1573), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 285/322 (88%), Positives = 306/322 (95%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           M+G QS+RDL +ELQ+QIP LRPSIHARRANI VKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct: 1   MFGIQSRRDLTMELQSQIPILRPSIHARRANIVVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR QGRVWWALEASKGANWYLQP+I  I +GIALK+SLK+S+L NAITLK+LIRKGIPPV
Sbjct: 61  VRNQGRVWWALEASKGANWYLQPEILLIGDGIALKTSLKISTLTNAITLKRLIRKGIPPV 120

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKKKSTVP+SYY+DLTKAV+GKVTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct: 121 LRPKVWFSLSGAAKKKSTVPDSYYSDLTKAVDGKVTPATRQIDHDLPRTFPGHPWLDTPE 180

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV DCYT
Sbjct: 181 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVRDCYT 240

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
            NLSGCHVEQRVFKDLL ++CPRIA+HLE + FDVSLVATEWFLCLFSKSLPSETTLRVW
Sbjct: 241 TNLSGCHVEQRVFKDLLAQKCPRIATHLEDMGFDVSLVATEWFLCLFSKSLPSETTLRVW 300

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           DVLFYEGAKVLFH ALAIFK++
Sbjct: 301 DVLFYEGAKVLFHAALAIFKMK 322

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398086|ref|NP_566323.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|145332002|ref|NP_001078123.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|98960973|gb|ABF58970.1| At3g07890 [Arabidopsis thaliana] gi|110737642|dbj|BAF00761.1| putative GTPase activator protein [Arabidopsis thaliana] gi|332641094|gb|AEE74615.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana] gi|332641095|gb|AEE74616.1| RabGAP/TBC domain-containing protein [Arabidopsis thaliana]

 Score =  608 bits (1569), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 286/322 (88%), Positives = 304/322 (94%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           M+G QS+RDL +ELQ+QIP LRPSIHARRANI VKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct: 1   MFGIQSRRDLTMELQSQIPILRPSIHARRANIVVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR QGRVWWALEASKGANWYLQP+I  I +GIALK+SLKLS+L NAITLK+LIRKGIPPV
Sbjct: 61  VRNQGRVWWALEASKGANWYLQPEILLIGDGIALKTSLKLSTLTNAITLKRLIRKGIPPV 120

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKKKSTVPESYY+DLTKAVEG VTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct: 121 LRPKVWFSLSGAAKKKSTVPESYYSDLTKAVEGMVTPATRQIDHDLPRTFPGHPWLDTPE 180

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV DCYT
Sbjct: 181 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVRDCYT 240

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
            NLSGCHVEQRVFKDLL ++C RIA+HLE + FDVSLVATEWFLCLFSKSLPSETTLRVW
Sbjct: 241 TNLSGCHVEQRVFKDLLAQKCSRIATHLEDMGFDVSLVATEWFLCLFSKSLPSETTLRVW 300

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           DVLFYEGAKVLFH ALAIFK++
Sbjct: 301 DVLFYEGAKVLFHAALAIFKMK 322

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068867|ref|XP_002302845.1| predicted protein [Populus trichocarpa] gi|222844571|gb|EEE82118.1| predicted protein [Populus trichocarpa]

 Score =  607 bits (1564), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 285/322 (88%), Positives = 306/322 (95%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           MY T SKR+ ++  Q Q+  LRPSIH+RRAN+ VKFQDLYGF VEGNVDDVN+LNEVREK
Sbjct: 1   MYHTHSKREFSIGFQPQMQILRPSIHSRRANLMVKFQDLYGFAVEGNVDDVNILNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEASKGANWYL P ++S++EGIALKSSLKLS+L NAITLK+LIRKGIPPV
Sbjct: 61  VRQQGRVWWALEASKGANWYLLPHVSSLTEGIALKSSLKLSTLTNAITLKRLIRKGIPPV 120

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVT ATKQIDHDLPRTFPGHPWLDT +
Sbjct: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTAATKQIDHDLPRTFPGHPWLDTQE 180

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT
Sbjct: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
           NNLSGCHVEQRVF+DLLVK+CPRIA+HLE L+FDVSLVATEWFLCLFSKSLPSETTLRVW
Sbjct: 241 NNLSGCHVEQRVFQDLLVKKCPRIAAHLEELEFDVSLVATEWFLCLFSKSLPSETTLRVW 300

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           DVLFYEGAKVLFHVALAIFK++
Sbjct: 301 DVLFYEGAKVLFHVALAIFKMK 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113351|ref|XP_002332603.1| predicted protein [Populus trichocarpa] gi|222834457|gb|EEE72934.1| predicted protein [Populus trichocarpa]

 Score =  605 bits (1561), Expect = e-171,   Method: Compositional matrix adjust.
 Identities = 284/322 (88%), Positives = 305/322 (94%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           MY T SKR+ ++  Q Q+  LRPSIH+RRAN+ VKFQDLYGF VEGNVDDVN+LNEVREK
Sbjct: 1   MYHTHSKREFSIGFQPQMQILRPSIHSRRANLMVKFQDLYGFAVEGNVDDVNILNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEASKGANWYL P ++S++EGIALKSSLKLS+L NAITLK+LIRKGIPPV
Sbjct: 61  VRQQGRVWWALEASKGANWYLLPHVSSLTEGIALKSSLKLSTLTNAITLKRLIRKGIPPV 120

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVT  TKQIDHDLPRTFPGHPWLDT +
Sbjct: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTAVTKQIDHDLPRTFPGHPWLDTQE 180

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT
Sbjct: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
           NNLSGCHVEQRVF+DLLVK+CPRIA+HLE L+FDVSLVATEWFLCLFSKSLPSETTLRVW
Sbjct: 241 NNLSGCHVEQRVFQDLLVKKCPRIAAHLEELEFDVSLVATEWFLCLFSKSLPSETTLRVW 300

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           DVLFYEGAKVLFHVALAIFK++
Sbjct: 301 DVLFYEGAKVLFHVALAIFKMK 322

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499495|ref|XP_003518575.1| PREDICTED: TBC1 domain family member 2A-like [Glycine max]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 281/322 (87%), Positives = 304/322 (94%), Gaps = 3/322 (0%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           MYGT+SK DLA E Q+Q+  LRPSIH+RRAN+TVKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct: 1   MYGTKSKIDLAFEYQSQVAVLRPSIHSRRANLTVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEASKGANWYLQ    +I +G AL SSLK S++ANAITLKKLIRKGIPPV
Sbjct: 61  VRQQGRVWWALEASKGANWYLQ---TTIGQGSALTSSLKFSAMANAITLKKLIRKGIPPV 117

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPK+WFSLSGAAKKKSTVP+SYY+DLTKAVEGKVTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct: 118 LRPKIWFSLSGAAKKKSTVPDSYYDDLTKAVEGKVTPATRQIDHDLPRTFPGHPWLDTPE 177

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHA LRRVLV YSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT
Sbjct: 178 GHAALRRVLVAYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 237

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
           NNLSGCHVEQRVFKDLL K+CPRIA+HLEAL+FDVSLV TEWFLCLFSKSLPSET LRVW
Sbjct: 238 NNLSGCHVEQRVFKDLLSKKCPRIATHLEALEFDVSLVTTEWFLCLFSKSLPSETALRVW 297

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           DV+FYEGAKV+F+VALAIFK++
Sbjct: 298 DVIFYEGAKVIFNVALAIFKMK 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554560|ref|XP_003545613.1| PREDICTED: TBC1 domain family member 2A-like [Glycine max]

 Score =  595 bits (1534), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 282/322 (87%), Positives = 304/322 (94%), Gaps = 3/322 (0%)

Query: 1   MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
           MYGT+SK DLA E Q+Q+  LRPSIH+RRAN+TVKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct: 1   MYGTKSKIDLAFEYQSQVAVLRPSIHSRRANLTVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query: 61  VREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPV 120
           VR+QGRVWWALEASKGANWYL     +I +G AL SSLK S+LANAITLKKLIRKGIPPV
Sbjct: 61  VRQQGRVWWALEASKGANWYLH---TTIGQGSALTSSLKFSALANAITLKKLIRKGIPPV 117

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LRPK+WFSLSGAAKKKSTV +SYY+DLTKAVEGKVTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct: 118 LRPKIWFSLSGAAKKKSTVLDSYYDDLTKAVEGKVTPATRQIDHDLPRTFPGHPWLDTPE 177

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           GHA LRRVLV YSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT
Sbjct: 178 GHAALRRVLVAYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 237

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
           NNLSGCHVEQRVFKDLLVK+CPRIA+HLEAL+FDVSLV TEWFLCLFSKSLPSETTLRVW
Sbjct: 238 NNLSGCHVEQRVFKDLLVKKCPRIATHLEALEFDVSLVTTEWFLCLFSKSLPSETTLRVW 297

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           DV+FYEGAKV+F+VALAIFK++
Sbjct: 298 DVIFYEGAKVIFNVALAIFKMK 319

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:2077472	400	AT3G07890 [Arabidopsis thalian	0.978	0.805	0.863	2.9e-151
DICTYBASE|DDB_G0275345	702	DDB_G0275345 "Rab GTPase-activ	0.641	0.300	0.443	3.8e-44
ZFIN|ZDB-GENE-100922-148	946	tbc1d2b "TBC1 domain family, m	0.647	0.225	0.431	1.3e-42
UNIPROTKB|F1NUZ2	964	Gga.54340 "Uncharacterized pro	0.644	0.219	0.438	2.6e-41
UNIPROTKB|F1PRT6	834	TBC1D2B "Uncharacterized prote	0.823	0.324	0.381	5.9e-41
UNIPROTKB|Q9BYX2	928	TBC1D2 "TBC1 domain family mem	0.641	0.227	0.434	1.1e-40
UNIPROTKB|F1MC26	844	TBC1D2B "Uncharacterized prote	0.914	0.356	0.361	1.3e-40
RGD|1307436	963	Tbc1d2b "TBC1 domain family, m	0.644	0.220	0.429	3.1e-40
UNIPROTKB|F6Y8N2	927	TBC1D2 "Uncharacterized protei	0.650	0.230	0.420	4.7e-40
MGI|MGI:1914266	965	Tbc1d2b "TBC1 domain family, m	0.644	0.219	0.429	5.2e-40

TAIR|locus:2077472 AT3G07890 [Arabidopsis thaliana (taxid:3702)]

 Score = 1476 (524.6 bits), Expect = 2.9e-151, P = 2.9e-151
 Identities = 278/322 (86%), Positives = 294/322 (91%)

Query:     1 MYGTQSKRDLALELQAQIPFLRPSIHARRANITVKFQDLYGFTVEGNVDDVNVLNEVREK 60
             M+G QS+RDL +ELQ+QIP LRPSIHARRANI VKFQDLYGFTVEGNVDDVNVLNEVREK
Sbjct:     1 MFGIQSRRDLTMELQSQIPILRPSIHARRANIVVKFQDLYGFTVEGNVDDVNVLNEVREK 60

Query:    61 VREQGRVWWALEASKGANWYLQPQIASISEGIAXXXXXXXXXXANAITLKKLIRKGIPPV 120
             VR QGRVWWALEASKGANWYLQP+I  I +GIA           NAITLK+LIRKGIPPV
Sbjct:    61 VRNQGRVWWALEASKGANWYLQPEILLIGDGIALKTSLKLSTLTNAITLKRLIRKGIPPV 120

Query:   121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
             LRPKVWFSLSGAAKKKSTVPESYY+DLTKAVEG VTPAT+QIDHDLPRTFPGHPWLDTP+
Sbjct:   121 LRPKVWFSLSGAAKKKSTVPESYYSDLTKAVEGMVTPATRQIDHDLPRTFPGHPWLDTPE 180

Query:   181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
             GHA LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV DCYT
Sbjct:   181 GHAALRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVRDCYT 240

Query:   241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
              NLSGCHVEQRVFKDLL ++C RIA+HLE + FDVSLVATEWFLCLFSKSLPSETTLRVW
Sbjct:   241 TNLSGCHVEQRVFKDLLAQKCSRIATHLEDMGFDVSLVATEWFLCLFSKSLPSETTLRVW 300

Query:   301 DVLFYEGAKVLFHVALAIFKVR 322
             DVLFYEGAKVLFH ALAIFK++
Sbjct:   301 DVLFYEGAKVLFHAALAIFKMK 322

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0030048 "actin filament-based movement" evidence=RCA

GO:0051645 "Golgi localization" evidence=RCA

GO:0051646 "mitochondrion localization" evidence=RCA

GO:0060151 "peroxisome localization" evidence=RCA

DICTYBASE|DDB_G0275345 DDB_G0275345 "Rab GTPase-activating protein 1-like" [Dictyostelium discoideum (taxid:44689)]

 Score = 468 (169.8 bits), Expect = 3.8e-44, P = 3.8e-44
 Identities = 95/214 (44%), Positives = 137/214 (64%)

Query:   109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPR 168
             LK+LIR GIP   R  +WF  SG   + S   + Y+N L K   GK + A KQI  D+ R
Sbjct:   415 LKELIRGGIPGEYRSMLWFRASGGYARLSENQDEYFNIL-KENAGKKSVAVKQILMDVDR 473

Query:   169 TFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAV 228
             TFP H +L+T +   +L  VLV YS+R+  VGYCQ +N++A  LL+ M +E +A+W L  
Sbjct:   474 TFPDHKFLNTKEKMESLTNVLVAYSWRNPKVGYCQCMNFIAGYLLIYM-SEPEAYWTLVS 532

Query:   229 LLENVLVNDCYTNNLSGCHVEQR-VFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLF 287
             ++E +L  + +TN +    V+ R VF DLL K+ PR+  HL + +  + L+ T+WFLC+ 
Sbjct:   533 IIEELLPTEYFTNTMIDSSVDVRFVFDDLLQKKIPRLHQHLTSFNLTLPLIITQWFLCIM 592

Query:   288 SKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV 321
             + + P+ETT R+WDV F EG+KVLF VAL+ FK+
Sbjct:   593 ATTTPTETTFRIWDVFFSEGSKVLFRVALSFFKL 626

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

ZFIN|ZDB-GENE-100922-148 tbc1d2b "TBC1 domain family, member 2B" [Danio rerio (taxid:7955)]

 Score = 460 (167.0 bits), Expect = 1.3e-42, P = 1.3e-42
 Identities = 94/218 (43%), Positives = 135/218 (61%)

Query:   109 LKKLIRKGIPPVLRPKVW-FSLSGAAKK-KSTVPESYYNDLTKAVEGKVTPATKQIDHDL 166
             LK L+R G+P + R KVW + +S   KK +   P+ YY++L      K  PA KQI+ DL
Sbjct:   638 LKALMRGGVPHIHRSKVWSWCVSFHVKKMRDCQPKDYYHNLLCMANDKPNPACKQIELDL 697

Query:   167 PRTFPGHPWLDTPD--GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFW 224
              RT P +    +PD  G   LR VL+ +S+R+ D+GYCQGLN +AA+ LL +  +EDAFW
Sbjct:   698 LRTLPNNKHYSSPDSDGIQKLRNVLLAFSWRNPDIGYCQGLNRLAAIALLYLD-QEDAFW 756

Query:   225 MLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFL 284
              L  ++E  + +D YT  L G  V+QRVFKDL+ ++ PR+ +H E    D SL+   WFL
Sbjct:   757 CLVAIVEVFMPHDYYTKTLLGSQVDQRVFKDLMYEKLPRLHAHFEHYKVDFSLITFNWFL 816

Query:   285 CLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR 322
              +F  S+ S+   ++WD   YEG K++F  ALA+FK +
Sbjct:   817 VVFVDSVVSDILFKIWDSFLYEGPKIIFRFALALFKYK 854

GO:0005543 "phospholipid binding" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|F1NUZ2 Gga.54340 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 448 (162.8 bits), Expect = 2.6e-41, P = 2.6e-41
 Identities = 96/219 (43%), Positives = 133/219 (60%)

Query:   109 LKKLIRKGIPPVLRPKVW---FSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHD 165
             LK LIR GIP   R KVW    +L     K +TVPE +   L  A+E K  PA+KQI+ D
Sbjct:   656 LKNLIRSGIPHEHRSKVWKWCVNLHVKKFKDTTVPEYFQTLLQSALE-KQNPASKQIELD 714

Query:   166 LPRTFPGHPWLDTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAF 223
             L RT P +    +P  +G   LR VL+ +S+R+ D+GYCQGLN + A+ LL ++ +EDAF
Sbjct:   715 LLRTLPNNKHYSSPTSEGIQKLRNVLLAFSWRNPDIGYCQGLNRLVAIALLYLE-QEDAF 773

Query:   224 WMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWF 283
             W L  ++E  +  D YT  L G  V+QRVFKDL+ ++ PR+ +H E    D +L+   WF
Sbjct:   774 WCLVTIVEVFMPRDYYTKTLLGSQVDQRVFKDLMSEKLPRLHAHFEQYKVDYTLITFNWF 833

Query:   284 LCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR 322
             L +F  S+ S+   ++WD   YEG KV+F  ALA FK +
Sbjct:   834 LVVFVDSVVSDILFKIWDSFLYEGPKVIFRFALAFFKYK 872

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F1PRT6 TBC1D2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 443 (161.0 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 111/291 (38%), Positives = 160/291 (54%)

Query:    38 DLYGF-TVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIAXXX 96
             D+YGF TV  + ++  ++ +VR    +   +    E S G  W  +   ASI        
Sbjct:   466 DIYGFRTVPEDDEEEKLVAKVRALDLKTLHLTETQEVSTGVKW--ENYFASIMN------ 517

Query:    97 XXXXXXXANAITLKKLIRKGIPPVLRPKVW---FSLSGAAKKKSTVPESYYNDLTKAVEG 153
                    A +  LK LIR GIP   R  VW     L     K +T P  +   L KA+E 
Sbjct:   518 ----REMACSPELKSLIRAGIPHEHRSTVWKWCVDLHTRKFKDNTEPGYFQTLLQKALE- 572

Query:   154 KVTPATKQIDHDLPRTFPG--HPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAAL 211
             K  PA+KQI+ DL RT P   H    T +G   LR VL+ +S+R+ D+GYCQGLN + A+
Sbjct:   573 KQNPASKQIELDLLRTLPTNKHYSCPTSEGIQKLRNVLLAFSWRNPDIGYCQGLNRLVAV 632

Query:   212 LLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEAL 271
              LL ++ +EDAFW LA ++E  +  D YT  L G  V+QRVF+DL+ ++ PR+ +HL+  
Sbjct:   633 ALLYLE-QEDAFWCLATIVEVFMPRDYYTKTLLGSQVDQRVFRDLMSEKLPRLHAHLDQY 691

Query:   272 DFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR 322
             + D +L+   WFL +F  S+ S+   ++WD   YEG KV+F  ALA+FK +
Sbjct:   692 NVDYTLITFNWFLVVFVDSVVSDILFKIWDSFLYEGPKVIFRFALALFKYK 742

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|Q9BYX2 TBC1D2 "TBC1 domain family member 2A" [Homo sapiens (taxid:9606)]

 Score = 442 (160.7 bits), Expect = 1.1e-40, P = 1.1e-40
 Identities = 93/214 (43%), Positives = 130/214 (60%)

Query:   109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPR 168
             LK+L+R G+P   RP+VW  L     +    P  Y   L++  + +  PA +QI+ DL R
Sbjct:   618 LKQLLRAGVPREHRPRVWRWLVHLRVQHLHTPGCYQELLSRG-QAREHPAARQIELDLNR 676

Query:   169 TFPGHPWLDTPDGHAT--LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWML 226
             TFP +     P       LRRVL+ +S+++  +GYCQGLN +AA+ LLV++ EE AFW L
Sbjct:   677 TFPNNKHFTCPTSSFPDKLRRVLLAFSWQNPTIGYCQGLNRLAAIALLVLEEEESAFWCL 736

Query:   227 AVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCL 286
               ++E ++  D Y N L+   V+QRV +DLL ++ PR+ +HL     D+SLV   WFL +
Sbjct:   737 VAIVETIMPADYYCNTLTASQVDQRVLQDLLSEKLPRLMAHLGQHHVDLSLVTFNWFLVV 796

Query:   287 FSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFK 320
             F+ SL S   LRVWD   YEG KV+F  ALAIFK
Sbjct:   797 FADSLISNILLRVWDAFLYEGTKVVFRYALAIFK 830

GO:0005543 "phospholipid binding" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0030054 "cell junction" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0005097 "Rab GTPase activator activity" evidence=IDA

GO:0032851 "positive regulation of Rab GTPase activity" evidence=IDA

GO:0045296 "cadherin binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|F1MC26 TBC1D2B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 440 (159.9 bits), Expect = 1.3e-40, P = 1.3e-40
 Identities = 117/324 (36%), Positives = 169/324 (52%)

Query:     8 RDLALELQAQIPFLRPSIHARRANIT---VKFQDLYGF-TVEGNVDDVNVLNEVREKVRE 63
             RD+  +L      +    H  +A I    V   D+YGF TV  + ++  ++  VR    +
Sbjct:   443 RDVIAQLLEDALQVESPEHPEQAFIKPHLVSEYDIYGFKTVPEDDEEEKLVARVRALDLK 502

Query:    64 QGRVWWALEASKGANWYLQPQIASISEGIAXXXXXXXXXXANAITLKKLIRKGIPPVLRP 123
                +    E S G  W  +   AS                A +  LK L+R GIP   R 
Sbjct:   503 TLHLTENQEVSTGVKW--ENHFAS----------TVNREMACSPELKNLVRAGIPHEHRS 550

Query:   124 KVW-FSLSGAAKK--KSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPG--HPWLDT 178
             KVW + +    KK   ST P  +   L KA+E K  PA+KQI+ DL RT P   H    T
Sbjct:   551 KVWKWCVDRHIKKFKDSTQPGYFQTLLQKALE-KQNPASKQIELDLLRTLPNNKHYSCPT 609

Query:   179 PDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDC 238
              +G   LR VL+ +S+R+ D+GYCQGLN + A+ LL ++ +EDAFW L  ++E  +  D 
Sbjct:   610 SEGIQKLRNVLLAFSWRNPDIGYCQGLNRLVAVALLYLE-QEDAFWCLVTIVEVFMPRDY 668

Query:   239 YTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLR 298
             YT  L G  V+QRVF+DL+ ++ PR+ +H E    D +L+   WFL +F  S+ S+   +
Sbjct:   669 YTKTLLGSQVDQRVFRDLMSEKLPRLHAHFEQYKVDYTLITFNWFLVVFVDSVVSDVLFK 728

Query:   299 VWDVLFYEGAKVLFHVALAIFKVR 322
             +WD   YEG KV+F  ALA+FK +
Sbjct:   729 IWDSFLYEGPKVIFRFALALFKYK 752

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

RGD|1307436 Tbc1d2b "TBC1 domain family, member 2B" [Rattus norvegicus (taxid:10116)]

 Score = 438 (159.2 bits), Expect = 3.1e-40, P = 3.1e-40
 Identities = 94/219 (42%), Positives = 135/219 (61%)

Query:   109 LKKLIRKGIPPVLRPKVW-FSLSGAAKK-KSTVPESYYNDLT-KAVEGKVTPATKQIDHD 165
             LK LIR GIP   R KVW + +    +K K ++   Y+  L  KA+E K  PA+KQI+ D
Sbjct:   655 LKNLIRAGIPHEHRSKVWKWCVDRHTRKFKDSMEPGYFQALLQKALE-KQNPASKQIELD 713

Query:   166 LPRTFPGHPWLDTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAF 223
             L RT P +    +P  +G   LR VL+ +S+R+ D+GYCQGLN + A+ LL ++ +EDAF
Sbjct:   714 LLRTLPNNKHYSSPTSEGIQKLRNVLLAFSWRNPDIGYCQGLNRLVAVALLYLE-QEDAF 772

Query:   224 WMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWF 283
             W L  ++E  +  D YT  L G  V+QRVF+DLL ++ PR+ +H E    D +L+   WF
Sbjct:   773 WCLVTIVEVFMPRDYYTKTLLGSQVDQRVFRDLLSEKLPRLHTHFEQYKVDYTLITFNWF 832

Query:   284 LCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR 322
             L +F  S+ S+   ++WD   YEG KV+F  ALA+FK +
Sbjct:   833 LVVFVDSVVSDILFKIWDSFLYEGPKVIFRFALALFKYK 871

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|F6Y8N2 TBC1D2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 436 (158.5 bits), Expect = 4.7e-40, P = 4.7e-40
 Identities = 93/221 (42%), Positives = 135/221 (61%)

Query:   104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVT--PATKQ 161
             A ++ LK+L+R G+P   RP+VW  L     +    P  Y   L++   G+V   PA +Q
Sbjct:   612 APSVELKQLLRAGVPREHRPRVWRWLVHLRVQHLQSPGRYQELLSR---GQVCEHPAARQ 668

Query:   162 IDHDLPRTFPGHPWLDTPDGHAT--LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTE 219
             I+ DL RTFP +     P  +    LRRVL+ +S+++  +GYCQGLN +AA+ LLV++ E
Sbjct:   669 IELDLHRTFPSNKHFTCPTSNFPDKLRRVLLAFSWQNPTIGYCQGLNRLAAIALLVLEEE 728

Query:   220 EDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVA 279
             E AFW L  ++E ++  D Y+  L+   V+QRV +DLL+++ PR+ +HL     D+S + 
Sbjct:   729 ESAFWCLVAIVETIMPADYYSKTLTSSQVDQRVLQDLLLEKLPRLMAHLGQHRVDLSFIT 788

Query:   280 TEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFK 320
               WFL +F+ SL S   LRVWD   YEG KV+F  ALAIFK
Sbjct:   789 FNWFLVVFADSLISNILLRVWDAFLYEGTKVVFRYALAIFK 829

GO:0005622 "intracellular" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

MGI|MGI:1914266 Tbc1d2b "TBC1 domain family, member 2B" [Mus musculus (taxid:10090)]

 Score = 436 (158.5 bits), Expect = 5.2e-40, P = 5.2e-40
 Identities = 94/219 (42%), Positives = 134/219 (61%)

Query:   109 LKKLIRKGIPPVLRPKVW-FSLSGAAKK-KSTVPESYYNDLT-KAVEGKVTPATKQIDHD 165
             LK LIR GIP   R KVW + +    +K K ++   Y+  L  KA+E K  PA+KQI+ D
Sbjct:   657 LKNLIRAGIPHEHRSKVWKWCVDRHTRKFKDSMEPDYFQTLLQKALE-KQNPASKQIELD 715

Query:   166 LPRTFPGHPWLDTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAF 223
             L RT P +    +P  +G   LR VL+ +S+R+ D+GYCQGLN + A+ LL +  +EDAF
Sbjct:   716 LLRTLPNNKHYSSPTSEGIQKLRSVLLAFSWRNPDIGYCQGLNRLVAVALLYLD-QEDAF 774

Query:   224 WMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWF 283
             W L  ++E  +  D YT  L G  V+QRVF+DLL ++ PR+ +H E    D +L+   WF
Sbjct:   775 WCLVTIVEVFMPRDYYTKTLLGSQVDQRVFRDLLSEKLPRLHTHFEQYKVDYTLITFNWF 834

Query:   284 LCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR 322
             L +F  S+ S+   ++WD   YEG KV+F  ALA+FK +
Sbjct:   835 LVVFVDSVVSDILFKIWDSFLYEGPKVIFRFALALFKYK 873

GO:0003674 "molecular_function" evidence=ND

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
smart00164	216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	3e-61
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	6e-61
COG5210	496	COG5210, COG5210, GTPase-activating protein [Gener	4e-59

>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p

 Score =  194 bits (495), Expect = 3e-61
 Identities = 89/212 (41%), Positives = 121/212 (57%), Gaps = 3/212 (1%)

Query: 113 IRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPG 172
           +RKG+PP LR  VW  L  A    ++  +  Y+ L K           QI+ DL RTFP 
Sbjct: 1   VRKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPDDKSIVHQIEKDLRRTFPE 60

Query: 173 HPWLDTPDG--HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLL 230
           H +    +G    +LRRVL  Y+  + +VGYCQG+N++AA LLLVM+ EEDAFW L  L+
Sbjct: 61  HSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMEDEEDAFWCLVKLM 120

Query: 231 ENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKS 290
           E    N  Y  ++SG  ++      L+ +  P +  HL+ L    SL A  WFL LF++ 
Sbjct: 121 ERYGPN-FYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLYALRWFLTLFARE 179

Query: 291 LPSETTLRVWDVLFYEGAKVLFHVALAIFKVR 322
           LP E  LR+WDVLF EG+  LF VALA+ K+ 
Sbjct: 180 LPLEIVLRIWDVLFAEGSDFLFRVALALLKLH 211

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score =  193 bits (492), Expect = 6e-61
 Identities = 83/202 (41%), Positives = 114/202 (56%), Gaps = 3/202 (1%)

Query: 121 LRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD 180
           LR +VW  L G   +                + + +P  +QI+ D+PRTFP H +    +
Sbjct: 3   LRGEVWKLLLGNLSESKQRDSVSQYSKLL--KLEDSPDEEQIEKDVPRTFPHHFFFKNGE 60

Query: 181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT 240
           G   LRR+L  YS  + DVGYCQG+N++AA LLLV+  EE+AFW    LLE +L  D + 
Sbjct: 61  GQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEYLL-RDFFL 119

Query: 241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVW 300
            +  G   +  VF++LL K  P +  HL+ L  D SL A++WFL LF++ LP ET LR+W
Sbjct: 120 PSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFARELPLETVLRLW 179

Query: 301 DVLFYEGAKVLFHVALAIFKVR 322
           D+    G   LF VALAI K  
Sbjct: 180 DLFLEGGKFFLFRVALAILKRF 201

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]

 Score =  197 bits (502), Expect = 4e-59
 Identities = 91/231 (39%), Positives = 120/231 (51%), Gaps = 4/231 (1%)

Query: 94  LKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEG 153
           L  +           L++LIRKGIP  LR  VW  L G        P  Y   L    E 
Sbjct: 190 LDPNPLSFLPVQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNPGLYERLLNLHREA 249

Query: 154 KVTPAT--KQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGLNYVA 209
           K+       QI+ DL RTFP +    T        LRRVL  YS  + +VGY QG+N++A
Sbjct: 250 KIPTQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLA 309

Query: 210 ALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLE 269
           A LLLV+++EE AFW L  LL+N  +   +  NLSG H + +V  DL+ +  P +  HL 
Sbjct: 310 APLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLL 369

Query: 270 ALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFK 320
                + + A  WFL LF +  P E  LR+WD LF EG+ +LF +ALAI K
Sbjct: 370 REGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILK 420

Length = 496

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
KOG2058	436	consensus Ypt/Rab GTPase activating protein [Intra	100.0
smart00164	199	TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable R	100.0
KOG2222	848	consensus Uncharacterized conserved protein, conta	100.0
COG5210	496	GTPase-activating protein [General function predic	100.0
KOG4347	671	consensus GTPase-activating protein VRP [General f	100.0
KOG2223	586	consensus Uncharacterized conserved protein, conta	100.0
PF00566	214	RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR00	100.0
KOG2221	267	consensus PDZ-domain interacting protein EPI64, co	100.0
KOG1092	484	consensus Ypt/Rab-specific GTPase-activating prote	100.0
KOG4567	370	consensus GTPase-activating protein [General funct	99.98
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	99.97
KOG1102	397	consensus Rab6 GTPase activator GAPCenA and relate	99.97
KOG1093	725	consensus Predicted protein kinase (contains TBC a	99.96
KOG2224	781	consensus Uncharacterized conserved protein, conta	99.91
KOG2197	488	consensus Ypt/Rab-specific GTPase-activating prote	99.85
KOG4436	948	consensus Predicted GTPase activator NB4S/EVI5 (co	99.85
KOG2595	395	consensus Predicted GTPase activator protein [Sign	99.84
KOG1091	625	consensus Ypt/Rab-specific GTPase-activating prote	99.8
KOG2801	559	consensus Probable Rab-GAPs [Intracellular traffic	99.45
KOG3636	669	consensus Uncharacterized conserved protein, conta	99.45
KOG1648	813	consensus Uncharacterized conserved protein, conta	97.09
PF14961	1296	BROMI: Broad-minded protein	96.11
KOG2224	781	consensus Uncharacterized conserved protein, conta	95.32
KOG1102	397	consensus Rab6 GTPase activator GAPCenA and relate	84.02

>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.1e-56  Score=423.38  Aligned_cols=275  Identities=44%  Similarity=0.708  Sum_probs=228.6

Q ss_pred             ccccccccCCcccCCcCc----hhHHHHHHHHHHHHhHHHHHHHHhccCCccccccccccchhhhhhhcccccCCCCHHH
Q 020189           33 TVKFQDLYGFTVEGNVDD----VNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAIT  108 (329)
Q Consensus        33 ~~~~~D~yGF~~~~~~~~----~~~~~~~~~~~~~~~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  108 (329)
                      +...+|+|||........    .+.+....+...+++.+|+..+.++ .+|..                 +-.....+++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~k~~s~~~~~~~r~~~~~~l~~~~~-~~~~~-----------------~~~~~~~s~e  148 (436)
T KOG2058|consen   87 KNNGFDQYSLQKLIGLPPSDGYLKWLSSYLAYEERRQLRWELELQSN-IKLHS-----------------PNDFPPRSDE  148 (436)
T ss_pred             ccCcccccchhhcccCCcchhhhHHHHHhhhhhhhHHHHHHHHhhhh-hcccc-----------------cccccCCcHH
Confidence            345789999875432222    1222222233334445777766655 66642                 1112347899


Q ss_pred             HHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCC-CCCCCcc--hHHHH
Q 020189          109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGH-PWLDTPD--GHATL  185 (329)
Q Consensus       109 Lk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~-~~f~~~~--~~~~L  185 (329)
                      ||++||+|||+++|+.||..++|.......  .++|++++.....+.++..+||+.|+.||||++ +.|.+++  ++..|
T Consensus       149 lk~liRkGiP~~~R~~VW~~~~g~~~~~~~--~~~yq~ll~~~~~~~~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~L  226 (436)
T KOG2058|consen  149 LKRLIRKGIPPELRGEVWWVLSGARRQLNY--PGYYQELLRKGDEKKSPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTL  226 (436)
T ss_pred             HHHHHHcCCChhhhhHHHHHHhcchhhccC--chhHHHHHhcCCCccchHHHHHHhccccccCCCcccCCCCCchHHHHH
Confidence            999999999999999999999994443322  468998887765556689999999999999999 7888765  48999


Q ss_pred             HHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHH
Q 020189          186 RRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIA  265 (329)
Q Consensus       186 ~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~  265 (329)
                      +|||.||+.+||.||||||||++||+||++|++||+|||||+.+++++++. ||++++.|.++++.+|+.+++..+|+|+
T Consensus       227 rRvL~Aya~hNp~vGYCQGmNflAallLL~~~~EE~AFW~Lv~iie~~lp~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~  305 (436)
T KOG2058|consen  227 RRVLLAYARHNPSVGYCQGMNFLAALLLLLMPSEEDAFWMLVALIENYLPR-YYTPNLIGSQVDQKVLRELLREKLPKLS  305 (436)
T ss_pred             HHHHHHHHhhCCCCcchhhHHHHHHHHHHhcCChHHHHHHHHHHHHHhchh-hcCchhhhhhccHHHHHHHHHHHCHHHH
Confidence            999999999999999999999999999999977999999999999999865 9999999999999999999999999999


Q ss_pred             hhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhh--hhhccC
Q 020189          266 SHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR--FLLTLN  328 (329)
Q Consensus       266 ~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~--~il~l~  328 (329)
                      .||+.++++.++++++||+|+|++++|.++++||||++|+||.+++|++|+|+++..  +++..+
T Consensus       306 ~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~Alai~k~~ee~il~~~  370 (436)
T KOG2058|consen  306 LHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRVALAILKKHEEEILKED  370 (436)
T ss_pred             HhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999999993  355443

>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p

Probab=100.00  E-value=7.3e-44  Score=312.65  Aligned_cols=194  Identities=43%  Similarity=0.757  Sum_probs=176.3

Q ss_pred             HhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc--chHHHHHHHHHH
Q 020189          114 RKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGHATLRRVLVG  191 (329)
Q Consensus       114 ~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~~~~~L~rVL~a  191 (329)
                      ++|||+++|+.+|+.++|+.....+.....|+++.+.....+....++|++||+||+|++++|+.+  .+++.|.|||.+
T Consensus         2 ~~Gip~~~R~~vW~~ll~~~~~~~~~~~~~Y~~l~~~~~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~   81 (199)
T smart00164        2 RKGVPPSLRGVVWKLLLNAQPMDTSADKDLYSRLLKETAPKDKSIVHQIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKA   81 (199)
T ss_pred             CCCCCHHHHHHHHHHHhCCchhhhcccchHHHHHHHhhcCCChhhHHHHhcccCCCCCCchhhcCCCcccHHHHHHHHHH
Confidence            689999999999999999987654333567888887654443345789999999999999999864  589999999999


Q ss_pred             hhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhh-
Q 020189          192 YSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEA-  270 (329)
Q Consensus       192 y~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~-  270 (329)
                      |+.+||++||||||++|||+|++++++|++|||+|++++++.. ..+|.++++++...+.+++.+++.++|+|++||++ 
T Consensus        82 ~~~~~p~~gY~QGm~~i~~~ll~~~~~e~~af~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~  160 (199)
T smart00164       82 YALYNPEVGYCQGMNFLAAPLLLVMPDEEDAFWCLVKLMERYG-PNFYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDK  160 (199)
T ss_pred             HHHHCCCCceeccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhC-cccCCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHh
Confidence            9999999999999999999999999789999999999999987 47788998999999999999999999999999996 


Q ss_pred             cCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCc
Q 020189          271 LDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGA  308 (329)
Q Consensus       271 ~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~  308 (329)
                      .|+++.+|+.+||+|+|++.+|++.++||||+|+++|.
T Consensus       161 ~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~  198 (199)
T smart00164      161 LGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS  198 (199)
T ss_pred             cCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999995

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.

>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=7e-43  Score=325.33  Aligned_cols=220  Identities=35%  Similarity=0.686  Sum_probs=206.6

Q ss_pred             CCCCHHHHHHHHHh-CCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc-
Q 020189          102 SLANAITLKKLIRK-GIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP-  179 (329)
Q Consensus       102 ~~~~~~kLk~~i~~-GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~-  179 (329)
                      ...+.+|++.+++. |||+.+|+.+|+.|+|+..++... +..|++++++..+.......||++|+-|+.|++..|..+ 
T Consensus       155 ~~~ktdk~~~llkeggiphslr~~lw~rlsga~~kkk~a-e~sy~~ilk~~andk~~~~~qiekdllr~lpnn~cf~k~n  233 (848)
T KOG2222|consen  155 MELKTDKFEELLKEGGIPHSLRAFLWMRLSGALAKKKDA-ETSYEDILKACANDKLMIGKQIEKDLLRILPNNACFSKKN  233 (848)
T ss_pred             cccchHHHHHHHHcCCCCcchhHHHHHHhhhhhhhhccc-cccHHHHHHHhcccccchhHHHHHHHHHhCCCcceeeCCC
Confidence            34578999999975 599999999999999998776654 467999999988888888999999999999999999765 


Q ss_pred             -chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHH
Q 020189          180 -DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLV  258 (329)
Q Consensus       180 -~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  258 (329)
                       .|.+.|+|||++.+...|++||||||.-|+|.||++| .||.|||++.++++.++|..||+..+-|++.+.++...++.
T Consensus       234 ~~gi~~lrrilk~ia~ifpdigycqg~gviva~lllf~-~ee~afwmmaaiiedilp~nfysqtllgiqaderv~~~li~  312 (848)
T KOG2222|consen  234 GEGIEALRRILKCIAFIFPDIGYCQGMGVIVACLLLFC-EEENAFWMMAAIIEDILPANFYSQTLLGIQADERVMHHLIA  312 (848)
T ss_pred             CcchHHHHHHHhhheeecCCcccccCccHHHHHHHHHh-cchhHHHHHHHHHHHhcCchhhhhhHhccchhHHHHHHHHH
Confidence             5799999999999999999999999999999999999 79999999999999999999999999999999999999999


Q ss_pred             hhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh
Q 020189          259 KQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF  323 (329)
Q Consensus       259 ~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~  323 (329)
                      .+.|++-+.|+.+.+..++.+..||+|+|++++.....+||||.||++|.-.+|++.++|||+++
T Consensus       313 ~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~i~ilkmke  377 (848)
T KOG2222|consen  313 CHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLIIGILKMKE  377 (848)
T ss_pred             hccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999944

>COG5210 GTPase-activating protein [General function prediction only]

Probab=100.00  E-value=2.2e-41  Score=334.98  Aligned_cols=218  Identities=41%  Similarity=0.681  Sum_probs=199.0

Q ss_pred             CCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcC-CCCc--ccchhhhccCCcCCCCCCCCCcc
Q 020189          104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEG-KVTP--ATKQIDHDLPRTFPGHPWLDTPD  180 (329)
Q Consensus       104 ~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~-~~~~--~~~qI~~Dl~RT~~~~~~f~~~~  180 (329)
                      ....+++.++++|||..+|+.+|..++|+.......+ ..|..+...... ....  +..+|++||.||+|.+..|+.+.
T Consensus       200 ~~~~~~~~~i~~gip~~~r~~vw~~~~~~~~~~~~~~-~~y~~~~~~~~~~~~~~~~~~~~i~~Dl~rt~~~~~~f~~~~  278 (496)
T COG5210         200 VQLSKLRELIRKGIPNELRGDVWEFLLGIGFDLDKNP-GLYERLLNLHREAKIPTQEIISQIEKDLSRTFPDNSLFQTEI  278 (496)
T ss_pred             hhHHHHHHHHHhcCChHhhhhhHHHHhccchhhccCc-hHHHHHHHHHHhcCCCcHHHHHHHHccccccccccccccCcc
Confidence            4778999999999999999999999999987766544 556666653332 2223  68999999999999999999887


Q ss_pred             hHHH--HHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHH
Q 020189          181 GHAT--LRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLV  258 (329)
Q Consensus       181 ~~~~--L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~  258 (329)
                      ++..  |+|||.||+.+||++||||||++|||+||++|++|++||||+++++++...+++|..++.|++.++.++..+++
T Consensus       279 s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a~ll~~~~~Ee~AF~~l~~L~~~~~l~~~~~~~~~G~~~~~~~l~~~v~  358 (496)
T COG5210         279 SIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCLVKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVE  358 (496)
T ss_pred             cccHHHHHHHHHHHHhcCCCCceeccHHHHHHHHHHHhhhhHHHHHHHHHHHHhccchhhcccCCcHHHHHHHHHHHHHH
Confidence            7666  99999999999999999999999999999999669999999999999776799999999999999999999999


Q ss_pred             hhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhh
Q 020189          259 KQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR  322 (329)
Q Consensus       259 ~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~  322 (329)
                      ..+|++|+||.+.|+...+|+++||+|+|.+.+|.+.++||||++|++|..++|.+++|+++..
T Consensus       359 ~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~~~~~l~~~  422 (496)
T COG5210         359 ELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLL  422 (496)
T ss_pred             HHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999983

>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]

Probab=100.00  E-value=3e-39  Score=311.85  Aligned_cols=257  Identities=37%  Similarity=0.653  Sum_probs=225.0

Q ss_pred             ccccCCcccCCcCchhHHHHHHHHHHHHhHHHHHHHHhccCCccccccccccchhhhhhhcccccCCCCHHHHHHHHHhC
Q 020189           37 QDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKG  116 (329)
Q Consensus        37 ~D~yGF~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~kLk~~i~~G  116 (329)
                      .+.+||......+.....  .+++  .+++.|.+.....|.+-             +.         .+..+++++++.|
T Consensus       149 ~~~~~~~~~~~~~~d~~~--lre~--~k~k~W~~~f~~~G~~~-------------~~---------~qt~~~~Klv~~g  202 (671)
T KOG4347|consen  149 ESALGFGEKGKYKIDPRA--LREW--AKEKFWKKYFIKDGPNM-------------NQ---------IQTILLRKLLYNG  202 (671)
T ss_pred             cchhcccccCCCCCChHH--HHHH--HHHHHHHHHHHHhcccc-------------cH---------HHHHHHHHHHHHh
Confidence            678888754443332222  2222  33346777654444432             22         2678999999999


Q ss_pred             CCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCcchHHHHHHHHHHhhhcC
Q 020189          117 IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRD  196 (329)
Q Consensus       117 IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~~~~~L~rVL~ay~~~n  196 (329)
                      ||...|+++|..++|+-.....++ ++|.++++...++.+-..+.|++|++|..|+|+-|+++.|...|+|||.||++.|
T Consensus       203 ipe~~rgeiW~l~sGav~~~l~~~-Geygkll~~~~G~~~~a~eEIE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Aya~~N  281 (671)
T KOG4347|consen  203 FPEDPRGEIWYLASGAVASLLLNP-GEYGKLLHSVTGKRSVATEEIEPDLGRSLPEHPAFQSEPGIAALRRVLTAYAWSN  281 (671)
T ss_pred             cCCChHHHHHHhhhHHHHHhhcCc-HHhhhhhhcccCCcccccccccCCCCCCCCcchhhhCCCchhhHHHHHHhhhccC
Confidence            999999999999999877776665 6899999988888888999999999999999999999999999999999999999


Q ss_pred             CCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChh
Q 020189          197 SDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVS  276 (329)
Q Consensus       197 p~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~  276 (329)
                      |+|||||.||.+++.+++++ .||+|||+++++++.+. ++||+....|...++.+|+.+++.+.|.++.|+..+| ...
T Consensus       282 p~vGYcQaMNIV~s~lll~~-~EEeafwll~~lce~~i-p~yys~~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~  358 (671)
T KOG4347|consen  282 PEVGYCQAMNIVGSELLLFC-KEEEAFWLLSKLCEIYI-PDYYSKTVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLS  358 (671)
T ss_pred             CchhHHHHHHHHHHhhhhhh-ccchHHHHHHHHHHHhc-ccccchhhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccc
Confidence            99999999999999999998 89999999999999986 7999999999999999999999999999999999999 688


Q ss_pred             hhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh
Q 020189          277 LVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF  323 (329)
Q Consensus       277 ~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~  323 (329)
                      +...+||+|+|...+|++..+||-|+||.+|+++||.+||||++.|.
T Consensus       359 ~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rvlFqiaLail~~N~  405 (671)
T KOG4347|consen  359 TVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRVLFQIALAILKQNA  405 (671)
T ss_pred             eEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999965

>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=100.00  E-value=3.3e-39  Score=297.93  Aligned_cols=225  Identities=29%  Similarity=0.501  Sum_probs=196.2

Q ss_pred             ccCCCCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhc---------------CCCCcccchhhh
Q 020189          100 LSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVE---------------GKVTPATKQIDH  164 (329)
Q Consensus       100 ~~~~~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~---------------~~~~~~~~qI~~  164 (329)
                      |....++.+.+.+.|.|||+.+||+||....|..-+.   ....|.....+..               ........+|+.
T Consensus       285 We~m~~SrR~relWwQGiP~~VRGkvW~laIGNel~i---t~elfd~~la~Aker~ak~~aeq~~~sa~~re~sv~~i~L  361 (586)
T KOG2223|consen  285 WEDMLKSRRVRELWWQGIPPSVRGKVWSLAIGNELNI---TYELFDIALARAKEREAKSLAEQMSNSAADREASVELIKL  361 (586)
T ss_pred             hHHHHhhHHHHHHHHccCChhhcchhhHhhhCccccc---CHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchhheee
Confidence            3444578999999999999999999999999864322   1234443332211               112245779999


Q ss_pred             ccCCcCCCCCCCCCc-chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCc
Q 020189          165 DLPRTFPGHPWLDTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNL  243 (329)
Q Consensus       165 Dl~RT~~~~~~f~~~-~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~  243 (329)
                      |+.||||...+|+.+ .-.+.|..+|.||+.|.|++||+|||++|||+|++.| ++.+||.+|.+++++.+...+|..+.
T Consensus       362 DisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaAvLllnm-d~~~AFiafANLLdkp~q~Aff~~d~  440 (586)
T KOG2223|consen  362 DISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAAVLLLNM-DLADAFIAFANLLDKPCQQAFFRVDH  440 (586)
T ss_pred             chhccCcceeeeccCCchHHHHHHHhhhheeecCccccccchHHHHHHHHHcC-CcHHHHHHHHHHhccHHHHHHHhcCc
Confidence            999999999999875 3589999999999999999999999999999999999 89999999999999998889999999


Q ss_pred             hhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh
Q 020189          244 SGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF  323 (329)
Q Consensus       244 ~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~  323 (329)
                      +.+...+..|+..+++.+|+|+.||+++++.|..|..+|+.++|+..+|++.++||||+|+.+|..++|+.+++||++-+
T Consensus       441 s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~lgIlklye  520 (586)
T KOG2223|consen  441 SSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTALGILKLYE  520 (586)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999943


Q ss_pred             --hhccC
Q 020189          324 --LLTLN  328 (329)
Q Consensus       324 --il~l~  328 (329)
                        ++.|+
T Consensus       521 pkLl~mD  527 (586)
T KOG2223|consen  521 PKLLVMD  527 (586)
T ss_pred             chHhhhh
Confidence              55554

>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases []

Probab=100.00  E-value=7.2e-38  Score=276.81  Aligned_cols=201  Identities=37%  Similarity=0.631  Sum_probs=169.6

Q ss_pred             CchHHHHHHHhHcchhh-hc-----cCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCcchHHHHHHHHHHh
Q 020189          119 PVLRPKVWFSLSGAAKK-KS-----TVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGY  192 (329)
Q Consensus       119 ~~~R~~vW~~llg~~~~-~~-----~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~~~~~L~rVL~ay  192 (329)
                      +++|+.+|+.++|..+. ..     ......+............+..++|++|+.||++++..+..+.+++.|.+||.+|
T Consensus         1 ~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~   80 (214)
T PF00566_consen    1 HSLRGQVWKILLGIEPNYSNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFKNEQNQKSLERILSAY   80 (214)
T ss_dssp             -CCHHHHHHHHCTCSCHHHHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHccchhhhhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhhhcchHHHHHHHHHHh
Confidence            46899999999998530 00     0001112222223334456779999999999999778888889999999999999


Q ss_pred             hhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcC
Q 020189          193 SFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALD  272 (329)
Q Consensus       193 ~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~  272 (329)
                      +.++|++||||||+.|++++++++.+|++||||++++++ ..++.+|..+.++++..+..++.+++.++|++++||++.|
T Consensus        81 ~~~~~~~~Y~qG~~~i~~~ll~~~~~e~~af~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~  159 (214)
T PF00566_consen   81 AKYNPDVGYCQGMNDIAAPLLLVFLDEEEAFWCFVQLLN-YYLPDFFQPNFKGLQKILKIFEQLLKKHDPELYNHLKQLG  159 (214)
T ss_dssp             HHHTTTTSS-TTHHHHHHHHHHTCSHHHHHHHHHHHHHT-HHGGGGTSTTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT
T ss_pred             ccccccccccchhhhhhhhhhhhcccccchhccccchhc-ccccccccccccccchhhhhHHHHHHhhhhhhhhhhhhhh
Confidence            999999999999999999999776689999999999994 4458999999999999999999999999999999999999


Q ss_pred             CChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchH-HHHHHHHHHhh
Q 020189          273 FDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKV-LFHVALAIFKV  321 (329)
Q Consensus       273 i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~-l~~~alailk~  321 (329)
                      +++..|+.+||+|+|++.+|.+.++|||| ++++|.++ ++++++|+++.
T Consensus       160 ~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~lail~~  208 (214)
T PF00566_consen  160 VDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIALAILKY  208 (214)
T ss_dssp             -GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999 77799988 99999999988

; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.

>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7.3e-37  Score=260.34  Aligned_cols=224  Identities=30%  Similarity=0.502  Sum_probs=193.0

Q ss_pred             cccccccccCCcccCCcCchhHHHHHHHHHHHHhHHHHHHHHhccCCccccccccccchhhhhhhcccccCCCCHHHHHH
Q 020189           32 ITVKFQDLYGFTVEGNVDDVNVLNEVREKVREQGRVWWALEASKGANWYLQPQIASISEGIALKSSLKLSSLANAITLKK  111 (329)
Q Consensus        32 ~~~~~~D~yGF~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~kLk~  111 (329)
                      ......|++||....+..+.+........++.|+.+|..|.    ++|....                   ..+-++++.
T Consensus        42 ~v~n~pdr~gfi~~~q~a~~~k~~~~~~~L~~ReskwL~ml----dnw~~~m-------------------~kk~~~ir~   98 (267)
T KOG2221|consen   42 EVTNLPDRFGFIEGEQGAQGKKEPETRGELRYRESKWLHML----DNWHEEM-------------------RKKQKKIRP   98 (267)
T ss_pred             hhhcCCcccceeecccccccCCCcccHHHHHhhHHHHHHHH----HHHHHHH-------------------Hhccccccc
Confidence            33445599999976555555555555677888888999997    7785321                   024578999


Q ss_pred             HHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc--chHHHHHHHH
Q 020189          112 LIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGHATLRRVL  189 (329)
Q Consensus       112 ~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~~~~~L~rVL  189 (329)
                      +|++|||+++|+++|+.|+|+......++ ..|.++..+..  +....+.|.+|++|.||.|.+|.+.  .|++.|+|+|
T Consensus        99 rcrkgippslr~Raw~ylsGa~~~~~~np-~~~~~~~~~pG--~p~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~l  175 (267)
T KOG2221|consen   99 RCRKGIPPSLRGRAWRYLSGAPSPPPKNP-VVFDELGPAPG--DPKTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVL  175 (267)
T ss_pred             hhhcCCCcccchhHHHhhcCCCCCCCCCc-chhhhccCCCC--CCcchhhhccccccCCCcccccccccccchHHHHHHH
Confidence            99999999999999999999988776665 45777655432  3567889999999999999999774  4799999999


Q ss_pred             HHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhh
Q 020189          190 VGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLE  269 (329)
Q Consensus       190 ~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~  269 (329)
                      .||+.++|+.||||+-..|||++|+.| ++++||||++.+++.++ ++||+.++..++.+..++..|+++.+|-.|.|+.
T Consensus       176 ka~ti~~pe~g~cq~qapiaa~llmhm-p~rdaf~~~vqicekyl-qgy~~sgleaiq~dg~il~~Llkk~~~p~~rH~~  253 (267)
T KOG2221|consen  176 KAYTIYKPEEGYCQAQAPIAAVLLMHM-PARDAFWCFVQICEKYL-QGYYSSGLEAIQNDGGILEGLLKKASPPPYRHLG  253 (267)
T ss_pred             HHHHHhCchhhhhhhhchHHHHHHhcc-cHHHHHHHHHHHHHHHc-ccccccchhhhhcccHHHHHHHHhcCCCCCcccc
Confidence            999999999999999999999999999 69999999999999997 8999999999999999999999999999999999


Q ss_pred             hcCCChhhhhHHHH
Q 020189          270 ALDFDVSLVATEWF  283 (329)
Q Consensus       270 ~~~i~~~~~~~~Wf  283 (329)
                      ..++++.+|.+.||
T Consensus       254 ~~kvdp~lym~ewF  267 (267)
T KOG2221|consen  254 GDKVDPLLYMTEWF  267 (267)
T ss_pred             cCCCCHHHhhhccC
Confidence            99999999999997

>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=3.9e-33  Score=257.67  Aligned_cols=222  Identities=27%  Similarity=0.452  Sum_probs=191.2

Q ss_pred             CCCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCc-------hHHHHHHHHHhcC------CCCcccchhhhccCCc
Q 020189          103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVP-------ESYYNDLTKAVEG------KVTPATKQIDHDLPRT  169 (329)
Q Consensus       103 ~~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~-------~~~y~~l~~~~~~------~~~~~~~qI~~Dl~RT  169 (329)
                      ..+.++|+++++.|||..+|+.+|+.++|+........       ...|.+++.....      ...+..+||..|++|+
T Consensus       175 ~id~~~Lr~l~w~Gvp~~~Rp~~Wkll~gylp~n~~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~~d~~rQI~id~prm  254 (484)
T KOG1092|consen  175 IIDLEKLRKLCWNGVPSKMRPIVWKLLSGYLPPNSDRREGTLQRKRKEYVDSVVQYFDSLTNGDEDQDTWRQIPIDIPRM  254 (484)
T ss_pred             cccHHHHHHHccCCCCccccCccceeeecccCcchhhhhhhHHHHHHHHHHHHHHHhccCCCccccCccccccccCCCCC
Confidence            45889999999999999999999999999854433221       1234455444332      2345789999999999


Q ss_pred             CCCCCCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhh-------------------------cCHHHHHH
Q 020189          170 FPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVM-------------------------KTEEDAFW  224 (329)
Q Consensus       170 ~~~~~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~-------------------------~~Ee~aF~  224 (329)
                      .|..+.|..+..|+.+.|||..++.++|..||+||.++++.+++.++                         .-|.||||
T Consensus       255 ~p~~~l~q~~~vq~~lerIl~iwairhpAsGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E~~~~iEADsyW  334 (484)
T KOG1092|consen  255 NPHIPLFQQKIVQEMLERILYIWAIRHPASGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAENAEDIEADAYW  334 (484)
T ss_pred             CccccchhhHHHHHHHHHHHHHHHHhcccccccccceeeechhhhhhhHhhcCccccccccchhhccHHHHhhhhhhHHH
Confidence            99999999999999999999999999999999999999999888765                         13889999


Q ss_pred             HHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHH
Q 020189          225 MLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLF  304 (329)
Q Consensus       225 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l  304 (329)
                      |+.++++.+  ++.|....+|++.....++.+++..++.+|+||+++|++..+|+++||.|||.+.+|+.+++|+||.|+
T Consensus       335 ClskLLD~I--QDNYtfaQpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl~~~iRlWDTY~  412 (484)
T KOG1092|consen  335 CLSKLLDGI--QDNYTFAQPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPLRCTIRLWDTYL  412 (484)
T ss_pred             HHHHHHHHh--hhhhhhcChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccchhHHHHHHHhh
Confidence            999999987  688999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCc---hHHHHHHHHHHhh--hhhhc
Q 020189          305 YEGA---KVLFHVALAIFKV--RFLLT  326 (329)
Q Consensus       305 ~eG~---~~l~~~alailk~--~~il~  326 (329)
                      +|+.   .++..||.|+|--  .+|++
T Consensus       413 aE~dgf~~FhvYvcAAFL~kW~~eL~e  439 (484)
T KOG1092|consen  413 AEPDGFNEFHVYVCAAFLLKWSSELME  439 (484)
T ss_pred             cCccchHHHHHHHHHHHHHHHHHHHHH
Confidence            9966   6778888887755  44543

>KOG4567 consensus GTPase-activating protein [General function prediction only]

Probab=99.98  E-value=5.3e-32  Score=241.84  Aligned_cols=216  Identities=26%  Similarity=0.476  Sum_probs=175.3

Q ss_pred             CCHHHHHHHHHhCCC--CchHHHHHHHhHcchhhhccCc-------hHHHHHHHHHhc--------------C-------
Q 020189          104 ANAITLKKLIRKGIP--PVLRPKVWFSLSGAAKKKSTVP-------ESYYNDLTKAVE--------------G-------  153 (329)
Q Consensus       104 ~~~~kLk~~i~~GIP--~~~R~~vW~~llg~~~~~~~~~-------~~~y~~l~~~~~--------------~-------  153 (329)
                      .+.++|++.+..|+|  ..+|+.+|+.++|+.+......       ...|.......-              +       
T Consensus        23 id~kelr~~~~~g~p~~~~lR~~~WkllL~Yl~~er~~w~s~La~~R~~Y~q~i~e~v~epg~~~~~~~v~~~D~~~dhP  102 (370)
T KOG4567|consen   23 IDLKELRKLCFYGVPDDASLRPLVWKLLLGYLPPERSKWTSFLAKKRSLYKQFIEEIVDEPGKKDNSKKVDSNDTDEDHP  102 (370)
T ss_pred             hhHHHHHHHhhcCCCCccchhHhHHHHHHhhcChhhhhhHHHHHHHHHHHHHHHHHhccCccccccccccccCcccccCC
Confidence            477999999999999  6899999999999865543321       122333322210              0       


Q ss_pred             -------------CCCcccchhhhccCCcCCCCCCCCCcc-------------------------h--HHHHHHHHHHhh
Q 020189          154 -------------KVTPATKQIDHDLPRTFPGHPWLDTPD-------------------------G--HATLRRVLVGYS  193 (329)
Q Consensus       154 -------------~~~~~~~qI~~Dl~RT~~~~~~f~~~~-------------------------~--~~~L~rVL~ay~  193 (329)
                                   ++++...||++|+.||.|+-.+|+...                         |  .....|||..||
T Consensus       103 ls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyA  182 (370)
T KOG4567|consen  103 LSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYA  182 (370)
T ss_pred             CCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHh
Confidence                         012345699999999999988775310                         1  234578999999


Q ss_pred             hcCCCCCccccchHHHHHHHHhhc----------CHHHHHHHHHHHHhhhcccccc----CCCchhhhHHHHHHHHHHHh
Q 020189          194 FRDSDVGYCQGLNYVAALLLLVMK----------TEEDAFWMLAVLLENVLVNDCY----TNNLSGCHVEQRVFKDLLVK  259 (329)
Q Consensus       194 ~~np~igY~QGm~~Iaa~LL~~~~----------~Ee~aF~~l~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~ll~~  259 (329)
                      ..||.|||+||||.|+|+++.++.          .|+|||.||..+|..+  ++.|    .++..|++..+..+..++++
T Consensus       183 KLNpGi~YVQGMNEIlaPiYYVfa~Dpd~e~~~~aEaDaFFCF~~LMsei--rDnf~k~LDdS~~GI~~~Msr~~~~lk~  260 (370)
T KOG4567|consen  183 KLNPGIGYVQGMNEILAPIYYVFANDPDEENRAYAEADAFFCFTQLMSEI--RDNFIKTLDDSVGGIHFLMSRLSELLKK  260 (370)
T ss_pred             hcCCcchHHhhhHHHhhhhheeeccCCchhhHHhhhhhHHHHHHHHHHHH--HHHHHHhccccccchHHHHHHHHHHHHH
Confidence            999999999999999999999883          4889999999999876  4666    45556777778899999999


Q ss_pred             hcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCc--hHHHHHHHHHHhh
Q 020189          260 QCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGA--KVLFHVALAIFKV  321 (329)
Q Consensus       260 ~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~--~~l~~~alailk~  321 (329)
                      ++-+||.||++.++.|..|+++|+.++++.+||++.++||||.+|++..  .++..+|.|++-+
T Consensus       261 ~D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil  324 (370)
T KOG4567|consen  261 HDEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLIL  324 (370)
T ss_pred             hhHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998865  6688888888776

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=99.97  E-value=3.1e-31  Score=260.21  Aligned_cols=216  Identities=33%  Similarity=0.578  Sum_probs=195.8

Q ss_pred             CCCHHHHHHHHHhCCCCchHHHHHHHhHcchhh------hccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCC
Q 020189          103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKK------KSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWL  176 (329)
Q Consensus       103 ~~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~------~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f  176 (329)
                      ..+.+++...++.|+|.+-|+.+|..++--...      ....+.--|+++++++    ++....|..|+.||||+|++|
T Consensus       564 k~d~ed~~~~l~~gvprsrrgeiwtflA~q~~~~~~l~~~kr~~~~p~~~llkqL----te~qhAi~idlgrtfp~h~~~  639 (948)
T KOG4436|consen  564 KKDMEDLHSALRTGVPRSRRGEIWTFLAEQHSLNHALPDKKRPPDFPYKELLKQL----TEQQHAILIDLGRTFPTHPYF  639 (948)
T ss_pred             cccHHHHHHHHHccCchhhhHHHHHHHHHHHHHhccCCcccCCCCCChHHHHHHH----HHHHHHHHHhhccccCCCHHH
Confidence            347899999999999999999999998754222      1122223367787774    567788999999999999999


Q ss_pred             CCc--chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHH
Q 020189          177 DTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFK  254 (329)
Q Consensus       177 ~~~--~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  254 (329)
                      +.+  .|+..|+++|.||+..+|++|||||+.++|++||++| +|++||-++-.+|-..+.+.-|.+++..++..++.+.
T Consensus       640 ~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~gvlllh~-~e~~afellk~LM~~r~~r~qy~pdm~~lq~qmyqLs  718 (948)
T KOG4436|consen  640 SDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAGVLLLHM-SEENAFELLKFLMFDRGMRKQYRPDMKKLQIQMYQLS  718 (948)
T ss_pred             HhhccccHHHHHHHHHHhcccCccccccCcchhhhhhhHhhc-chhhHHHHHHHHHHHHhhHhhhchHHHHHHHHHHHHH
Confidence            875  5799999999999999999999999999999999999 8999999999999988888899999999999999999


Q ss_pred             HHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh
Q 020189          255 DLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF  323 (329)
Q Consensus       255 ~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~  323 (329)
                      .+++.+.|+||+|++++.|+|++|+.+||+|.|+.-+|...+-||+|.++.+|..++|.+|+++|..++
T Consensus       719 rl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevifK~a~~llsv~k  787 (948)
T KOG4436|consen  719 RLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIFKVALSLLSVHK  787 (948)
T ss_pred             HHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhhhhHHHHHHhhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999965

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]

Probab=99.97  E-value=2.6e-30  Score=247.86  Aligned_cols=214  Identities=35%  Similarity=0.591  Sum_probs=185.9

Q ss_pred             CCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhcc-CchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc--c
Q 020189          104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-VPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--D  180 (329)
Q Consensus       104 ~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~-~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~  180 (329)
                      .+..++...+..|||..+|+.+|..+++....... .....|..   ..........++| +|+.||+|.+..|...  .
T Consensus       133 ~~~~~l~~~~~~gip~~~r~~~W~l~~~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~-~d~~Rt~~~~~~f~~~~~~  208 (397)
T KOG1102|consen  133 RRPLKLSRRVLVGIPDELRGLVWQLLLYAVEESLFDSLDELYRL---QLDEPEPHESEII-RDLSRTFPAHLLFRKRYGV  208 (397)
T ss_pred             ccHHHHHHHhhccccHHHHHHHHHHhcccHhhhhhhhHHHHHHH---hhccCCCchhHHH-hhccCcCcchhhhhhhcCc
Confidence            36789999999999999999999999987322221 11122222   1122233445566 9999999999999763  5


Q ss_pred             hHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhh
Q 020189          181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQ  260 (329)
Q Consensus       181 ~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  260 (329)
                      +|+.|.+|+.||+.++|++||||||..+|++++.++ +||+|||+++.+|..+. .+.|..++.+++..+..+..+++..
T Consensus       209 ~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~~ll~~~-~ee~af~~lv~l~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~  286 (397)
T KOG1102|consen  209 GQRSLYNVLKAYSLYDPEVGYCQGMSSIAAPLLLYL-PEEEAFPLLVKLMKNYG-LDLLSPGFSGLQRSFRQLQRLLKEL  286 (397)
T ss_pred             ccccccccchhhcccCCCcccccchhhHhhhhhccC-chhhhhhhhhhhhhccc-hhcccccCCchhhhHHHHHHHHHHh
Confidence            799999999999999999999999999999999999 69999999999999987 5666999999999999999999999


Q ss_pred             cHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh
Q 020189          261 CPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF  323 (329)
Q Consensus       261 ~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~  323 (329)
                      .|.++.|+...+++..+|+.+|++|+|+..+|++.++|+||+++.+|..+++++++++++.+.
T Consensus       287 ~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~~~l~~~~~  349 (397)
T KOG1102|consen  287 IPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFSLALLKHKA  349 (397)
T ss_pred             ChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHHHHHhhhhh
Confidence            999999999999999999999999999999999999999999999999999999999999844

>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]

Probab=99.96  E-value=4.2e-29  Score=238.22  Aligned_cols=208  Identities=27%  Similarity=0.462  Sum_probs=183.8

Q ss_pred             HHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCcchHHHH
Q 020189          106 AITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATL  185 (329)
Q Consensus       106 ~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~~~~~L  185 (329)
                      ...+-+..+.|+|+-+|+.+|..|++.....    ...|..+-+   +.+.+..+||+.|++|+.......+++.|++.|
T Consensus       345 ~~qI~r~a~vdvpp~~R~~iW~aLL~l~e~~----~a~y~~IDk---~Ts~~tdrqievdiprchQyd~~lsSp~~~r~l  417 (725)
T KOG1093|consen  345 RLQILREAYVDVPPLYRGFIWAALLQLEENH----TAFYTLIDK---GTSHSTDRQIEVDIPRCHQYDELLSSPKGHRKL  417 (725)
T ss_pred             HHHHHHHhccCCChhHhHHHHHHHhcCcccc----chhhhhhhc---CCCCcchhhhhcccchhhhcccccCCHHHHHHH
Confidence            3444555578999999999999999886543    345544322   234578999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCCCCccccchHHHHHHHHh-hcCHHHHHHHHHHHHhhhcccccc-CCCchhhhHHHHHHHHHHHhhcHH
Q 020189          186 RRVLVGYSFRDSDVGYCQGLNYVAALLLLV-MKTEEDAFWMLAVLLENVLVNDCY-TNNLSGCHVEQRVFKDLLVKQCPR  263 (329)
Q Consensus       186 ~rVL~ay~~~np~igY~QGm~~Iaa~LL~~-~~~Ee~aF~~l~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~ll~~~~P~  263 (329)
                      +|+|+|++...|...|.||+..+|++|+.. +.+|+-||.|+..++-+++ +.+| .++..-++....+|.+++..|+|+
T Consensus       418 rRvLkawv~~s~~fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kyc-q~fflkdns~vikeyLs~f~~l~AfhDpe  496 (725)
T KOG1093|consen  418 RRVLKAWVTWSPIFVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYC-QHFFLKDNSNVIKEYLSMFSQLLAFHDPE  496 (725)
T ss_pred             HHHHHHHHhcCcceeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHH-HHHHhhcCchhHHHHHHHHHHHHHhcCHH
Confidence            999999999999999999999999998654 5689999999999999998 4555 447777888999999999999999


Q ss_pred             HHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhh
Q 020189          264 IASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV  321 (329)
Q Consensus       264 L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~  321 (329)
                      |++||..+|+.+++|+.+||+|+|+++||.+..+.+||..+..++.+.+.+++|++..
T Consensus       497 L~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplmi~vAil~~  554 (725)
T KOG1093|consen  497 LLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLMIGVAILIQ  554 (725)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999977

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=99.91  E-value=3.3e-24  Score=198.78  Aligned_cols=219  Identities=21%  Similarity=0.415  Sum_probs=165.1

Q ss_pred             CCCHHHHHHHH-HhCCCCchHHHHHHHhHcchhhhccCch---------HHHHHHHHHhc-CCCC--------cccchhh
Q 020189          103 LANAITLKKLI-RKGIPPVLRPKVWFSLSGAAKKKSTVPE---------SYYNDLTKAVE-GKVT--------PATKQID  163 (329)
Q Consensus       103 ~~~~~kLk~~i-~~GIP~~~R~~vW~~llg~~~~~~~~~~---------~~y~~l~~~~~-~~~~--------~~~~qI~  163 (329)
                      ..+.-||++.+ ..||..++|+.||+.|+.......+..+         ..|+++.+.-- .-+.        ...-.++
T Consensus       421 iedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlysmspeeh~~fwknvq~tvd  500 (781)
T KOG2224|consen  421 IEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYSMSPEEHIAFWKNVQFTVD  500 (781)
T ss_pred             chhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHhheEEEEe
Confidence            34556888888 6899999999999999987655443321         33555543211 1111        1233578


Q ss_pred             hccCCcCCCCCCCCCcc--hHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhc-------
Q 020189          164 HDLPRTFPGHPWLDTPD--GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVL-------  234 (329)
Q Consensus       164 ~Dl~RT~~~~~~f~~~~--~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~-------  234 (329)
                      +||-||.+++++|..++  ..+.++|||..|+.|||.+||.|||+++.|+.|.-..+|.++||||+.+|....       
T Consensus       501 kdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdllapvlcevqnesetfwcfvglmqgmsdlvapil  580 (781)
T KOG2224|consen  501 KDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLAPVLCEVQNESETFWCFVGLMQGMSDLVAPIL  580 (781)
T ss_pred             cceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcchhhhhhccccchhhhhhhhhccchhhhhhHH
Confidence            99999999999997754  589999999999999999999988888888877766677777777777765210       


Q ss_pred             -----------------ccccc--CCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCCh--hhhhHHHHHHHccCCCCh
Q 020189          235 -----------------VNDCY--TNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDV--SLVATEWFLCLFSKSLPS  293 (329)
Q Consensus       235 -----------------~~~~~--~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~--~~~~~~WfltlF~~~lp~  293 (329)
                                       ...+|  ++.-..+...+..++.+++...|..|+||.++|-+-  .+|+-+|++.||.+.||-
T Consensus       581 aevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfkref~e  660 (781)
T KOG2224|consen  581 AEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFKREFPE  660 (781)
T ss_pred             HhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhhhcccH
Confidence                             01223  333344555667889999999999999999998443  457999999999999999


Q ss_pred             hhHHHHHHHHHhc--CchHHHHHHHHHHhh
Q 020189          294 ETTLRVWDVLFYE--GAKVLFHVALAIFKV  321 (329)
Q Consensus       294 ~~~lriWD~~l~e--G~~~l~~~alailk~  321 (329)
                      ..++|+|..-++.  -.-+.+++++||+.+
T Consensus       661 a~airiweacwa~y~tdyfhlficlaiiai  690 (781)
T KOG2224|consen  661 AEAIRIWEACWAHYLTDYFHLFICLAIIAI  690 (781)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            9999999999966  346778889999877

>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]

Probab=99.85  E-value=1.8e-21  Score=190.49  Aligned_cols=205  Identities=27%  Similarity=0.455  Sum_probs=172.7

Q ss_pred             HhCCCCchHHHHHHHhHcchhhhccCch---------HHHHHHHHHhcCCCC----------cccchhhhccCCcCCCCC
Q 020189          114 RKGIPPVLRPKVWFSLSGAAKKKSTVPE---------SYYNDLTKAVEGKVT----------PATKQIDHDLPRTFPGHP  174 (329)
Q Consensus       114 ~~GIP~~~R~~vW~~llg~~~~~~~~~~---------~~y~~l~~~~~~~~~----------~~~~qI~~Dl~RT~~~~~  174 (329)
                      ..|+-+.+|+.+|+.+.+......+..+         + |.....+......          .....|.+|+.||.+.+.
T Consensus       175 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~k~qW~~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~  253 (488)
T KOG2197|consen  175 SGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKLTDE-YFRLKLQWSSTSPEQSPESEGYLERKSRIEKDVGRTDRSLE  253 (488)
T ss_pred             ccccccchhhhhhhhhhcccCccccccccccccccccc-Hhhhhhhheeccccccccccchhhhhhhhhhhccccchhhh
Confidence            4567679999999999988766554322         2 2233222221111          223679999999999999


Q ss_pred             CCCCcch--HHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHH
Q 020189          175 WLDTPDG--HATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRV  252 (329)
Q Consensus       175 ~f~~~~~--~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  252 (329)
                      ++..+..  ...|..||.+|+.+++++||||||+++.++++.++++|.+|||||+.+|++.  ..-|..+..+++.....
T Consensus       254 ~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDllspi~~v~~de~~aFwcFv~fm~~~--~~nF~~d~~~~~~Ql~~  331 (488)
T KOG2197|consen  254 FYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLSPILIVMEDEVEAFWCFVGFMDRL--RHNFRIDQSGMQTQLAQ  331 (488)
T ss_pred             hhhcccccCHHHHHHHHhhcccccCccccccCchhhcCcceeeecCchHHHHHHHHHHHHH--hhcCccccccHHHHhhh
Confidence            9987766  9999999999999999999999999999999999999999999999999985  45677777889998889


Q ss_pred             HHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhc--CchHHHHHHHHHHhh
Q 020189          253 FKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYE--GAKVLFHVALAIFKV  321 (329)
Q Consensus       253 ~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~e--G~~~l~~~alailk~  321 (329)
                      +..+++..+|.+++||+..+.+-..++++|++.+|-+.+.++.++++|.+++..  ...+.+.++.|++..
T Consensus       332 ~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~~~~~l~~  402 (488)
T KOG2197|consen  332 LSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYVAPAILNK  402 (488)
T ss_pred             hhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHHHHhhhhc
Confidence            999999999999999999999999999999999999999999999999999965  337788899998874

>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]

Probab=99.85  E-value=4.8e-21  Score=188.89  Aligned_cols=219  Identities=25%  Similarity=0.339  Sum_probs=189.7

Q ss_pred             CCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCC-cccchhhhccCCcCCCCCCCCCcc--
Q 020189          104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVT-PATKQIDHDLPRTFPGHPWLDTPD--  180 (329)
Q Consensus       104 ~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~-~~~~qI~~Dl~RT~~~~~~f~~~~--  180 (329)
                      .+..+|+.+|.+|||+..|-.+|..++.........-...|.++........+ ...-.|..|++||.|.|.+|+...  
T Consensus       172 ~s~~~l~e~Ve~~~p~~frli~~qlLssatd~~q~~I~e~~sdl~~~s~~~Ek~~~~~~Irrdi~~~~~eh~~fke~~s~  251 (948)
T KOG4436|consen  172 KSLHKLKELVEGGIPMHFRLIRWQLLSSATDREQALIFEDYSDLAPCSSQQEKELHIGIIRRDIERTYPEHYFFKEQSST  251 (948)
T ss_pred             hchhhhHHHHhcCCchHHHHHHHHHhcccccchhhHHHHHHHHHhhhcchhhhhHHHHHHHHHhhccCcceeeeccCccC
Confidence            46789999999999999999999999987654321112235555444222111 123389999999999999997632  


Q ss_pred             -------hHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHH
Q 020189          181 -------GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVF  253 (329)
Q Consensus       181 -------~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~  253 (329)
                             +++.|+++.++|+...-++|||||-+++++.+++.| ++|.+|.+++.++..+..+..+.+.+..+......+
T Consensus       252 ~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~Gll~l~~-~~E~assv~~~lm~~~rl~~l~kpe~~~l~~~~~q~  330 (948)
T KOG4436|consen  252 VCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVGLLLLQM-PVEEASSVKVQLMILYRLRELSKPEMEPLGLCMFQL  330 (948)
T ss_pred             CcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHHHHHhcC-cHHHHHHHHHHHHHhhcccccCCcccchhHHHHHhh
Confidence                   489999999999999999999999999999999999 799999999999999998999999999999899999


Q ss_pred             HHHHHhhcH-HHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHH-hhhh
Q 020189          254 KDLLVKQCP-RIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIF-KVRF  323 (329)
Q Consensus       254 ~~ll~~~~P-~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alail-k~~~  323 (329)
                      +...+...| +++.|+.+.+++.++|...||++.|...+|+...-|+.|+|.++|-...|++.+|++ ..++
T Consensus       331 e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~egllk~fr~~ia~~~~~~d  402 (948)
T KOG4436|consen  331 ECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEGLLKRFRDSIAYLHQLRD  402 (948)
T ss_pred             cccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhccccccccccccHHHHHhhhHHHHHHHhh
Confidence            999999999 999999999999999999999999999999999999999999999999999999999 3344

>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]

Probab=99.84  E-value=1.7e-20  Score=169.91  Aligned_cols=211  Identities=18%  Similarity=0.261  Sum_probs=159.5

Q ss_pred             CHHHHHHHHH--hC-CCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCC---CCC
Q 020189          105 NAITLKKLIR--KG-IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPW---LDT  178 (329)
Q Consensus       105 ~~~kLk~~i~--~G-IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~---f~~  178 (329)
                      +.+.|+.+-.  .| +-+++|+.||..|+|..-....  ...+.+..+     .+++..|...|++|++..-+.   +..
T Consensus        47 dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~--~~~~~~~~q-----~hkd~nQV~LDv~RSl~rfppg~p~~~  119 (395)
T KOG2595|consen   47 DVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLD--ATSTLTPVQ-----KHKDYNQVILDVERSLGRFPPGIPKEL  119 (395)
T ss_pred             cHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCc--ccccCChhh-----hCcccceEEEehhhhhccCCCCCCHHH
Confidence            4455555542  22 2568999999999997654432  112222222     367899999999999865542   111


Q ss_pred             c-chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHH
Q 020189          179 P-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLL  257 (329)
Q Consensus       179 ~-~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll  257 (329)
                      + .-|+.|..++..-...+|+..|.||.++||..||+++ .|.+|+-++..+....+ ++|..+++.+.......+..++
T Consensus       120 R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~~tfLLv~-gE~~Al~l~E~L~~~~l-rdfM~~Tld~t~~qL~~i~~iI  197 (395)
T KOG2595|consen  120 RLQLQKQLTELILRVLRKYPTLNYYQGYHDIVVTFLLVV-GELEALSLMEELSTLHL-RDFMLPTLDFTVRQLRLISPII  197 (395)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCcchhcchhHHHHHHHHhh-hhHhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence            2 2355666655555567899999999999999999999 79999999999987654 8999999999999999999999


Q ss_pred             HhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCC-ChhhHHHHHHHHHhcCch--HHHHHHHHHHhhhhhh
Q 020189          258 VKQCPRIASHLEALDFDVSLVATEWFLCLFSKSL-PSETTLRVWDVLFYEGAK--VLFHVALAIFKVRFLL  325 (329)
Q Consensus       258 ~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~l-p~~~~lriWD~~l~eG~~--~l~~~alailk~~~il  325 (329)
                      +..+|+||+.|++-.+. .+|+.+|.+|+|+|.+ ++..++|++|+|++..+=  +.+..++.+....+|+
T Consensus       198 k~~nP~Ly~~l~~aevg-tlFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~piyv~A~vvL~r~~eIl  267 (395)
T KOG2595|consen  198 KEVNPELYQFLQSAEVG-TLFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLPIYVYAAVVLYRRSEIL  267 (395)
T ss_pred             hhcChHHHHHHHhhccc-ceehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchhHHHHHHHhhhhHHHHH
Confidence            99999999999998886 5689999999999999 589999999999988773  3333333333334444

>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=3.1e-19  Score=170.90  Aligned_cols=165  Identities=28%  Similarity=0.496  Sum_probs=127.5

Q ss_pred             cccchhhhccCCcCCCC-CCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhc------------------
Q 020189          157 PATKQIDHDLPRTFPGH-PWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK------------------  217 (329)
Q Consensus       157 ~~~~qI~~Dl~RT~~~~-~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~------------------  217 (329)
                      +..+.|+.|+.||||++ .+|+++.-+..|++||..|+..+|.+||-|||+.+.|+++++..                  
T Consensus       103 EL~~~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~  182 (625)
T KOG1091|consen  103 ELEKTIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPEIGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLG  182 (625)
T ss_pred             HHHHhhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchhhhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcC
Confidence            35679999999999999 89999999999999999999999999999999999999988751                  


Q ss_pred             -CHHH-----------HH--HHHHHHHhh--hc--------------------cccccCCCchhhhHHHHHHHHHHHhhc
Q 020189          218 -TEED-----------AF--WMLAVLLEN--VL--------------------VNDCYTNNLSGCHVEQRVFKDLLVKQC  261 (329)
Q Consensus       218 -~Ee~-----------aF--~~l~~l~~~--~~--------------------~~~~~~~~~~~~~~~~~~~~~ll~~~~  261 (329)
                       .|.+           ++  -++..+|..  +.                    +-+-+.++.+.+......+..++.+.+
T Consensus       183 f~E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D  262 (625)
T KOG1091|consen  183 FEERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVD  262 (625)
T ss_pred             cchhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhcc
Confidence             1222           22  122223211  00                    001112334445566678899999999


Q ss_pred             HHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHH-HHHhcCchHHH--HHHHHHHhh
Q 020189          262 PRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWD-VLFYEGAKVLF--HVALAIFKV  321 (329)
Q Consensus       262 P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD-~~l~eG~~~l~--~~alailk~  321 (329)
                      +.||.||.+.||.|..|..+|.-.||.+.||+..++-||| +.+..++...+  .+++++|-.
T Consensus       263 ~~Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~  325 (625)
T KOG1091|consen  263 KSLHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLY  325 (625)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999 77788875543  444444443

>KOG2801 consensus Probable Rab-GAPs [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.45  E-value=1.2e-12  Score=117.34  Aligned_cols=215  Identities=28%  Similarity=0.375  Sum_probs=157.0

Q ss_pred             CHHHHHHHHHhCC---CCchHHHHHHHhHcchhhhccCc-hHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCcc
Q 020189          105 NAITLKKLIRKGI---PPVLRPKVWFSLSGAAKKKSTVP-ESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPD  180 (329)
Q Consensus       105 ~~~kLk~~i~~GI---P~~~R~~vW~~llg~~~~~~~~~-~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~~  180 (329)
                      ...+||.+.|.|.   .+.+|+.|++.|..-.+-.-..| ...|.++.-..-++.+..---+..=+.-|-- -.+.-+..
T Consensus        31 elqelkqlarqgywaqshalrgkvyqrlirdipcrtvtpdasvysdivgkivgkhsssclplpefvdntqv-psyclnar  109 (559)
T KOG2801|consen   31 ELQELKQLARQGYWAQSHALRGKVYQRLIRDIPCRTVTPDASVYSDIVGKIVGKHSSSCLPLPEFVDNTQV-PSYCLNAR  109 (559)
T ss_pred             hHHHHHHHHhcchHHhhhhhhhHHHHHHHhcCCccccCCchhHHHHHHHHHhccCCcccccchhhcccCcC-chhhhcCc
Confidence            4578999999998   46799999999986543322222 3467777655443322211111111111110 01122345


Q ss_pred             hHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhcc-ccccCCCchhhhHHHHHHHHHHHh
Q 020189          181 GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLV-NDCYTNNLSGCHVEQRVFKDLLVK  259 (329)
Q Consensus       181 ~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~  259 (329)
                      |....+.||.+.++..|++.+|+.++.++|+||.+.-+|.++|---+.++.---+ +.....++..+...+..|..++.+
T Consensus       110 gegavrkilKOGanqfpdisfcpalpavvalllhysideaecfekacrilacndpgrrlidqsflafesscmtfgdlvnk  189 (559)
T KOG2801|consen  110 GEGAVRKILLCLANQFPDISFCPALPAVVALLLHYSIDEAECFEKACRILACNDPGRRLIDQSFLAFESSCMTFGDLVNK  189 (559)
T ss_pred             CchhHHHHHHHHhccCCCcccCcchHHHHHHHHHhcccHHHHHHHhheeeeecCcchhhhhhHHHHHHhhhhhHHHHHHH
Confidence            7788999999999999999999999999999999988999999877766532111 334455556677778899999999


Q ss_pred             hcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhh
Q 020189          260 QCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV  321 (329)
Q Consensus       260 ~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~  321 (329)
                      +....++.+-...-+.......|--.+| ..+|+-..-|++|+|+.||.++++++|+||||.
T Consensus       190 ycqaahklmvavsedvlqvyadwqrwlf-gelplcyfarvfdvflvegykvlyrvalailkf  250 (559)
T KOG2801|consen  190 YCQAAHKLMVAVSEDVLQVYADWQRWLF-GELPLCYFARVFDVFLVEGYKVLYRVALAILKF  250 (559)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHHHh-ccchHHHHHHHhhheeecchHHHHHHHHHHHHH
Confidence            9999888887766666677788888888 589999999999999999999999999999997

>KOG3636 consensus Uncharacterized conserved protein, contains TBC and Rhodanese domains [General function prediction only]

Probab=99.45  E-value=5.4e-13  Score=125.13  Aligned_cols=195  Identities=20%  Similarity=0.369  Sum_probs=142.0

Q ss_pred             CCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc---chHHHHHHHHHHh
Q 020189          116 GIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP---DGHATLRRVLVGY  192 (329)
Q Consensus       116 GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~---~~~~~L~rVL~ay  192 (329)
                      |=|...    |+.++|+..+..  +-..+..+..      -+...+|.+|..|-......= .+   .....|..++.-|
T Consensus        36 G~~~~~----W~~~L~V~~K~d--~l~~wd~iyd------Lp~Q~~lr~DC~~~~d~l~n~-ee~~v~vv~dlES~iTfY  102 (669)
T KOG3636|consen   36 GNDKSD----WMRLLGVSMKPN--PLDDWDQIYD------LPNQCALRNDCRKLADGLKNK-EEDKVPVVSDLESFITFY  102 (669)
T ss_pred             CCCHHH----HHHHhcccCCCC--chhhHHHHhC------CchhhHHHHHHHHHHhhcCCc-hhhccchhHhhhhHhhhh
Confidence            556555    999999875543  2334555433      355678888886654222111 11   1245788888888


Q ss_pred             hhcCCCCCccccchHHHH--HHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhh
Q 020189          193 SFRDSDVGYCQGLNYVAA--LLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEA  270 (329)
Q Consensus       193 ~~~np~igY~QGm~~Iaa--~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~  270 (329)
                      +. +.++.|......|.-  +|++.-.+..+.|-||.+++++|.|+++-..+.+     +..|+-||+.|+|+|++||+.
T Consensus       103 CK-~Rn~~Y~~d~gWi~lL~pl~~L~lprsd~fN~F~ai~~kYIPkdcrpkg~~-----Fh~FRLLlqYHdPelc~~Ldt  176 (669)
T KOG3636|consen  103 CK-KRNMDYIKDIGWITLLEPLLLLNLPRSDEFNVFFAITTKYIPKDCRPKGQI-----FHLFRLLLQYHDPELCNHLDT  176 (669)
T ss_pred             hh-ccCCcccccccHHHHHHHHHHhcCCcchhhhhhHhhhhcccCCCCCCCCcc-----chHHHHHHHhcCHHHhhhhhc
Confidence            75 345677777766654  3333333789999999999999988877765533     568999999999999999999


Q ss_pred             cCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHH-HHHHHHHhh--hhhhccCC
Q 020189          271 LDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLF-HVALAIFKV--RFLLTLNS  329 (329)
Q Consensus       271 ~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~-~~alailk~--~~il~l~s  329 (329)
                      ..++|.+|+..||-++|+.+.+.+.+..+||.|+-.+.+++. ++++.||--  .+|++++|
T Consensus       177 kkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~s  238 (669)
T KOG3636|consen  177 KKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKS  238 (669)
T ss_pred             cccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhcc
Confidence            999999999999999999999999999999999999998864 444444432  34777654

>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]

Probab=97.09  E-value=1.9e-05  Score=75.94  Aligned_cols=187  Identities=21%  Similarity=0.281  Sum_probs=119.4

Q ss_pred             HHHHHHHHhCCCCchHHHHHHHhHcchhhhcc------Cc---hHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCC
Q 020189          107 ITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST------VP---ESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLD  177 (329)
Q Consensus       107 ~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~------~~---~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~  177 (329)
                      .-+..-++.|+-...|+.+|+...+-......      +.   ...|+..+-...   ......|++|+.|.-.+..+|+
T Consensus       549 ~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~---~~~~~~~~kd~e~~~~~~~~fs  625 (813)
T KOG1648|consen  549 RVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF---RANLHRIDKDVERCDRNLMFFS  625 (813)
T ss_pred             HHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH---hhheeeecchhhhCcchheeec
Confidence            44555668999999999999998764322111      11   123544332221   2346789999999998888998


Q ss_pred             CcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHH
Q 020189          178 TPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLL  257 (329)
Q Consensus       178 ~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll  257 (329)
                      +.+..+. +++...|...|-+-||.|||.++.++++..+++|.-.--|+.-+|-+-  ++.|. ..++....+-.++ ++
T Consensus       626 ~~~~les-~~~~~~~~~~~l~~~~~~~~~dl~~p~~~~~ed~~~~~e~~s~~~~~q--~~~~~-q~~~~~~~l~~~r-~~  700 (813)
T KOG1648|consen  626 NKDNLES-RRVMYTYVRRNLEEGYTQGMCDLLAPLLVTFEDEALTLECFSLLMLRQ--RGKFP-QRPGMSKCLLNLR-LI  700 (813)
T ss_pred             CCcchhh-heeeeeeeccccccccccchhhccCCcCCChhhcccccCCCcHHHHHh--cccCC-CCCCccccccccc-ch
Confidence            8888877 889999999999999999999999999988755443332332222211  12221 2222222211222 34


Q ss_pred             HhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhc
Q 020189          258 VKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYE  306 (329)
Q Consensus       258 ~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~e  306 (329)
                      +-.+|-....=..     ....++||+.-|-+.++.+....+|......
T Consensus       701 ~v~~~l~s~id~~-----qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~  744 (813)
T KOG1648|consen  701 QVVDPLISDIDYA-----QALSFRWFLLDFKRELSYECTYKVWEVIWAA  744 (813)
T ss_pred             hhhcchhcchhhh-----hhcceeeeccCcccccCCCCcceeeEeeccc
Confidence            4444522221111     2235899999999999999999888887754

>PF14961 BROMI: Broad-minded protein

Probab=96.11  E-value=0.043  Score=58.77  Aligned_cols=134  Identities=18%  Similarity=0.225  Sum_probs=95.9

Q ss_pred             HHHHHhhhcCCCCCccccchHHHHHHHHhh-cCHHHHHHHHHHHHhhh----cc--ccccCCCc------hh----hhHH
Q 020189          187 RVLVGYSFRDSDVGYCQGLNYVAALLLLVM-KTEEDAFWMLAVLLENV----LV--NDCYTNNL------SG----CHVE  249 (329)
Q Consensus       187 rVL~ay~~~np~igY~QGm~~Iaa~LL~~~-~~Ee~aF~~l~~l~~~~----~~--~~~~~~~~------~~----~~~~  249 (329)
                      +++.-|..+++.-+| .|....|+.++++| .+-+.+.-.+..+-...    ++  +-..+...      .|    .-..
T Consensus      1088 ~~~~~~~~~~~~~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~~~ 1166 (1296)
T PF14961_consen 1088 HILFEFIHFCLQGSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYFCS 1166 (1296)
T ss_pred             HHHhhhhcccCCCCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhhhH
Confidence            344444444444344 68888888777776 45666666655554331    11  11111111      11    1224


Q ss_pred             HHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhh
Q 020189          250 QRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV  321 (329)
Q Consensus       250 ~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~  321 (329)
                      +..++.+++...|.++.-|.-.|..++..+.+|+-.||=+.+++..+..-.=+-+..|+.+-..+++|+||.
T Consensus      1167 ~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkH 1238 (1296)
T PF14961_consen 1167 CHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKH 1238 (1296)
T ss_pred             HHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHH
Confidence            568899999999999999999999999999999999999999998888777777788999988999999987

>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]

Probab=95.32  E-value=0.0054  Score=58.50  Aligned_cols=34  Identities=35%  Similarity=0.638  Sum_probs=31.0

Q ss_pred             CCccccchHHHHHHHHhhcCHHHHHHHHHHHHhh
Q 020189          199 VGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLEN  232 (329)
Q Consensus       199 igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~  232 (329)
                      +|..|||++++|++|.-..+|.++||||+.+|.+
T Consensus       566 vglmqgmsdlvapilaevldesdtfwcfvglmqn  599 (781)
T KOG2224|consen  566 VGLMQGMSDLVAPILAEVLDESDTFWCFVGLMQN  599 (781)
T ss_pred             hhhhccchhhhhhHHHhhhccccchhhhhhhhcc
Confidence            6788999999999888777999999999999986

>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]

Probab=84.02  E-value=0.18  Score=49.01  Aligned_cols=129  Identities=19%  Similarity=0.260  Sum_probs=88.2

Q ss_pred             hhhhccCCcCCCCCCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccC
Q 020189          161 QIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYT  240 (329)
Q Consensus       161 qI~~Dl~RT~~~~~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~  240 (329)
                      .|+.|+..|+.    +..+.++..=.  |.+|.-+|+++|||  +..+.+                       ...+...
T Consensus         2 ~~~~~~~~~~~----~~~~~~~~~~~--l~~~~~~~~~~~~~--~~~~~~-----------------------~~~~~~~   50 (397)
T KOG1102|consen    2 EIDSPVRLTFR----LRPRYGQKQNN--LAAYEPYNPEVGYC--VLHITS-----------------------KSDGFQS   50 (397)
T ss_pred             CCCcccccccc----CCCCccccccc--ccCCCccccccccc--hhhhhh-----------------------ccccccc
Confidence            35667777765    33333311111  88999999999999  544444                       1134444


Q ss_pred             CCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHh
Q 020189          241 NNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFK  320 (329)
Q Consensus       241 ~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk  320 (329)
                      .+...........+.......+.-..|+...+ ........|..-.|.+......+.++||.+..+|...+..+.-..++
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (397)
T KOG1102|consen   51 SNERKLTELRDSPESIPDLSQSKRPGHVDSSE-PTNELYPKSDERIFKDKPLLSLTLDLWDVKLLEGEQELTALSSSWLK  129 (397)
T ss_pred             CCcccccccccCcccccccccccccccccccc-cccccccccccccccccccccccchhHHHHhhhhHHHHHHHHHHhhh
Confidence            44444444333334444444555666777776 66677888999999999999999999999999999999888888777


Q ss_pred             h
Q 020189          321 V  321 (329)
Q Consensus       321 ~  321 (329)
                      +
T Consensus       130 ~  130 (397)
T KOG1102|consen  130 V  130 (397)
T ss_pred             h
Confidence            5

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	329
3hzj_A	310	Crystal Structure Of The Rabgap Domain Of The Rabga		1e-29
3qyb_A	301	X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab		4e-25
3qye_A	331	Crystal Structure Of Human Tbc1d1 Rabgap Domain Len		7e-25
2qq8_A	334	Crystal Structure Of The Putative Rabgap Domain Of		7e-16
3dzx_A	346	Crystal Structure Of The Rabgap Domain Of Human Tbc		2e-11
2g77_A	410	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-10
1fkm_A	396	Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p		6e-10
2qfz_A	345	Crystal Structure Of Human Tbc1 Domain Family Membe		5e-09

>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310

Iteration: 1
 Score =  126 bits (317), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 72/215 (33%), Positives = 111/215 (51%), Gaps = 9/215 (4%)
Query: 109 LKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPR 168
           L  L++ G+P  LR +VW  L+G    ++ +      D  + +  K +     I  D+ R
Sbjct: 26  LSTLVKSGVPEALRAEVWQLLAGCHDNQAXL------DRYRILITKDSAQESVITRDIHR 79
Query: 169 TFPGHPWL-DTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWML 226
           TFP H +  DT  DG  +L ++   YS  D D+GYCQG +++AA+LLL    EE AF +L
Sbjct: 80  TFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLL-HXPEEQAFCVL 138
Query: 227 AVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCL 286
             +  +  + D Y NN    H +    + L  +Q P + SH   L+ +    A++WFL L
Sbjct: 139 VKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLEAHXYASQWFLTL 198
Query: 287 FSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV 321
           F+   P      + D+L  EG  ++FHVALA+ K 
Sbjct: 199 FTAKFPLCXVFHIIDLLLCEGLNIIFHVALALLKT 233

>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301

Iteration: 1
 Score =  112 bits (279), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 70/215 (32%), Positives = 109/215 (50%), Gaps = 13/215 (6%)
Query: 112 LIRKGIPPVLRPKVW------FSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHD 165
           L+++G+P   R ++W      + L      K   P+  Y +L K    ++T     I  D
Sbjct: 45  LLKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPPDISYKELLK----QLTAQQHAILVD 100
Query: 166 LPRTFPGHPWLDTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAF 223
           L RTFP HP+       G  +L  +L  YS  D +VGYCQG+++VA +LLL M +EE AF
Sbjct: 101 LGRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHM-SEEQAF 159
Query: 224 WMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWF 283
            ML  L+ ++     Y  ++    ++      LL      + +HLE  +   SL A  WF
Sbjct: 160 EMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWF 219
Query: 284 LCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAI 318
           L LF+         RV+D++F +G +V+F VAL++
Sbjct: 220 LTLFASQFSLGFVARVFDIIFLQGTEVIFKVALSL 254

>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331

Iteration: 1
 Score =  111 bits (277), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 70/214 (32%), Positives = 109/214 (50%), Gaps = 13/214 (6%)
Query: 113 IRKGIPPVLRPKVW------FSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDL 166
           + +G+P   R ++W      F L      K    +  Y +L K    ++T     I  DL
Sbjct: 56  VGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLK----QLTSQQHAILIDL 111
Query: 167 PRTFPGHPWLDTP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFW 224
            RTFP HP+       G  +L  +L  YS  D +VGYCQGL++VA +LLL M +EE+AF 
Sbjct: 112 GRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFK 170
Query: 225 MLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFL 284
           ML  L+ ++ +   Y  ++    ++      LL      + +HLE  +   SL A  WFL
Sbjct: 171 MLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFL 230
Query: 285 CLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAI 318
            +F+   P     RV+D++F +G +V+F VAL++
Sbjct: 231 TMFASQFPLGFVARVFDMIFLQGTEVIFKVALSL 264

>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334

Iteration: 1
 Score = 81.3 bits (199), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 103/243 (42%), Gaps = 41/243 (16%)
Query: 109 LKKLIRKGIPPVLRPKVW--------------FSLSGAAKKK-----STVPESYYNDLTK 149
           ++ L  +GIPP +R KVW              F +  A  K+     ST      N+   
Sbjct: 41  VRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAG 100
Query: 150 AVEGKVTPATKQIDHDLPRTFP-------GHPWLDTPDGHATLRRVLVGYSFRDSDVGYC 202
                   + + I  D+ RTFP       G P+      H  L  +L  Y+    DVGY 
Sbjct: 101 FSAADREASLELIKLDISRTFPNLCIFQQGGPY------HDMLHSILGAYTCYRPDVGYV 154
Query: 203 QGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCH----VEQRVFKDLLV 258
           QG++++AA+L+L + T  DAF    +   N+L   C        H         F+    
Sbjct: 155 QGMSFIAAVLILNLDTA-DAF----IAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFE 209
Query: 259 KQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAI 318
           +  P++ +H +  +    +   +W   L+SKSLP +   R+WDV   +G + LF  AL I
Sbjct: 210 ENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGI 269
Query: 319 FKV 321
            K+
Sbjct: 270 LKL 272

>pdb|3DZX|A Chain A, Crystal Structure Of The Rabgap Domain Of Human Tbc1d22b Length = 346

Iteration: 1
 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 91/229 (39%), Gaps = 37/229 (16%)
Query: 109 LKKLIRKGIPPVLRPKVWFSLSG-----AAKKKSTVP---ESYYNDLTKAVEGKVTP--- 157
           L+K    G+P  +RP  W  LSG       ++K T+    E Y+  + +  + +      
Sbjct: 44  LRKCSWPGVPREVRPITWRLLSGYLPANTERRKLTLQRKREEYFGFIEQYYDSRNEEHHQ 103
Query: 158 -ATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVM 216
              +QI  D+PRT P  P    P       R+L  ++ R    GY QG+N +     +V 
Sbjct: 104 DTYRQIHIDIPRTNPLIPLFQQPLVQEIFERILFIWAIRHPASGYVQGINDLVTPFFVVF 163
Query: 217 -----------------------KTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVF 253
                                    E D+FW ++ LL+   + D YT    G   + +  
Sbjct: 164 LSEYVEEDVENFDVTNLSQDMLRSIEADSFWCMSKLLDG--IQDNYTFAQPGIQKKVKAL 221
Query: 254 KDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDV 302
           ++L+ +   ++ +H    + +    A  W   L  + LP   T+R+WD 
Sbjct: 222 EELVSRIDEQVHNHFRRYEVEYLQFAFRWMNNLLMRELPLRCTIRLWDT 270

>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410

Iteration: 1
 Score = 62.4 bits (150), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 87/244 (35%), Gaps = 41/244 (16%)
Query: 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESY-------YNDLTKAV----EG 153
           N   L+++   GIP + RP VW  L G     +   E +       Y D  K        
Sbjct: 42  NQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHS 101
Query: 154 KVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLL 213
           +  P   QI+ D+PRT P  P         +L+R+L  ++ R    GY QG+N +     
Sbjct: 102 RDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFF 161
Query: 214 LVMKT----------------------------EEDAFWMLAVLLENVLVNDCYTNNLSG 245
               T                            E D FW L  LLE   + D Y +   G
Sbjct: 162 ETFLTEYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLLEQ--ITDNYIHGQPG 219
Query: 246 CHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFY 305
              + +    L+ +    + +H +    +    A  W  CL  +     T +R+WD    
Sbjct: 220 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 279
Query: 306 EGAK 309
           E ++
Sbjct: 280 ETSQ 283

>pdb|1FKM|A Chain A, Crystal Structure Of The YptRAB-Gap Domain Of Gyp1p Length = 396

Iteration: 1
 Score = 61.6 bits (148), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 86/244 (35%), Gaps = 41/244 (16%)
Query: 105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESY-------YNDLTKAV----EG 153
           N   L+++   GIP + RP VW  L G     +   E +       Y D  K        
Sbjct: 22  NQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHS 81
Query: 154 KVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLL 213
           +  P   QI+ D+PRT P  P         +L+R+L  ++ R    GY QG+N +     
Sbjct: 82  RDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFF 141
Query: 214 LVMKT----------------------------EEDAFWMLAVLLENVLVNDCYTNNLSG 245
               T                            E D FW L  LLE   + D Y +   G
Sbjct: 142 ETFLTEYLPPSQIDDVEIKDPSTYXVDEQITDLEADTFWCLTKLLEQ--ITDNYIHGQPG 199
Query: 246 CHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFY 305
              + +    L+ +    + +H +    +    A  W  CL  +     T +R WD    
Sbjct: 200 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWXNCLLXREFQXGTVIRXWDTYLS 259
Query: 306 EGAK 309
           E ++
Sbjct: 260 ETSQ 263

>pdb|2QFZ|A Chain A, Crystal Structure Of Human Tbc1 Domain Family Member 22a Length = 345

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 87/233 (37%), Gaps = 45/233 (19%)
Query: 109 LKKLIRKGIPPVLRPKVWFSLSG---------------AAKKKSTVPESYYNDLTKAVEG 153
           L++L   GIP  +RP  W  LSG                 K+     E YY+     V  
Sbjct: 43  LRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQ 102
Query: 154 KVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLL 213
                 +QI  D+PR  P    L  P       R+L  ++ R    GY QG+N +     
Sbjct: 103 D---TYRQIHIDIPRMSPEALIL-QPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFF 158
Query: 214 LVM------------------------KTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVE 249
           +V                           E D +W ++ LL+ +   D YT    G  ++
Sbjct: 159 VVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGI--QDNYTFAQPGIQMK 216
Query: 250 QRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDV 302
            ++ ++L+ +   ++  HL+  +      A  W   L  + +P   T+R+WD 
Sbjct: 217 VKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDT 269

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	1e-93
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	7e-93
2qq8_A	334	TBC1 domain family member 14; structural genomics	4e-87
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	1e-59
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	2e-56
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	4e-43

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331

 Score =  280 bits (719), Expect = 1e-93
 Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 13/236 (5%)

Query: 94  LKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVP------ESYYNDL 147
           L +  +     +   +   + +G+P   R ++W  L+     K   P      +  Y +L
Sbjct: 37  LSTPGRSKIKFDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKEL 96

Query: 148 TKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGH--ATLRRVLVGYSFRDSDVGYCQGL 205
            K    ++T     I  DL RTFP HP+     G    +L  +L  YS  D +VGYCQGL
Sbjct: 97  LK----QLTSQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGL 152

Query: 206 NYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIA 265
           ++VA +LLL M +EE+AF ML  L+ ++ +   Y  ++    ++      LL      + 
Sbjct: 153 SFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLY 211

Query: 266 SHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV 321
           +HLE  +   SL A  WFL +F+   P     RV+D++F +G +V+F VAL++   
Sbjct: 212 NHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGS 267

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310

 Score =  278 bits (712), Expect = 7e-93
 Identities = 71/216 (32%), Positives = 110/216 (50%), Gaps = 9/216 (4%)

Query: 108 TLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLP 167
            L  L++ G+P  LR +VW  L+G    ++      Y  L      K +     I  D+ 
Sbjct: 25  GLSTLVKSGVPEALRAEVWQLLAGCHDNQAM--LDRYRILIT----KDSAQESVITRDIH 78

Query: 168 RTFPGHPWLDTPD--GHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWM 225
           RTFP H +       G  +L ++   YS  D D+GYCQG +++AA+LLL M  EE AF +
Sbjct: 79  RTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMP-EEQAFCV 137

Query: 226 LAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLC 285
           L  ++ +  + D Y NN    H +    + L+ +Q P + SH   L+ +  + A++WFL 
Sbjct: 138 LVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLT 197

Query: 286 LFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV 321
           LF+   P      + D+L  EG  ++FHVALA+ K 
Sbjct: 198 LFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKT 233

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score =  264 bits (676), Expect = 4e-87
 Identities = 59/233 (25%), Positives = 95/233 (40%), Gaps = 21/233 (9%)

Query: 109 LKKLIRKGIPPVLRPKVWFSLSGA-------------------AKKKSTVPESYYNDLTK 149
           ++ L  +GIPP +R KVW    G                     +  ST      N+   
Sbjct: 41  VRDLWWQGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAG 100

Query: 150 AVEGKVTPATKQIDHDLPRTFPGHPWLDTPD-GHATLRRVLVGYSFRDSDVGYCQGLNYV 208
                   + + I  D+ RTFP           H  L  +L  Y+    DVGY QG++++
Sbjct: 101 FSAADREASLELIKLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFI 160

Query: 209 AALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHL 268
           AA+L+L +    DAF   + LL        +  +          F+    +  P++ +H 
Sbjct: 161 AAVLILNL-DTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHF 219

Query: 269 EALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV 321
           +  +    +   +W   L+SKSLP +   R+WDV   +G + LF  AL I K+
Sbjct: 220 KKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKL 272

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score =  195 bits (496), Expect = 1e-59
 Identities = 57/272 (20%), Positives = 96/272 (35%), Gaps = 42/272 (15%)

Query: 98  LKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKV-- 155
           LK  ++ N   L+++   GIP + RP VW  L G     +   E +     K     +  
Sbjct: 15  LKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKH 74

Query: 156 ---------TPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLN 206
                     P   QI+ D+PRT P  P         +L+R+L  ++ R    GY QG+N
Sbjct: 75  TFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGIN 134

Query: 207 YVAALLLLVMKT----------------------------EEDAFWMLAVLLENVLVNDC 238
            +         T                            E D FW L  LLE +   D 
Sbjct: 135 DLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQIT--DN 192

Query: 239 YTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLR 298
           Y +   G   + +    L+ +    + +H +    +    A  W  CL  +     T +R
Sbjct: 193 YIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIR 252

Query: 299 VWDVLFYEGAKV-LFHVALAIFKVRFLLTLNS 329
           +WD    E ++      +++   ++  +T   
Sbjct: 253 MWDTYLSETSQEVTSSYSMSSNDIKPPVTPTE 284

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score =  185 bits (472), Expect = 2e-56
 Identities = 51/251 (20%), Positives = 89/251 (35%), Gaps = 42/251 (16%)

Query: 109 LKKLIRKGIPPVLRPKVWFSLSGA------------AKKKSTVPESYYNDLTKAVEGKVT 156
           L++L   GIP  +RP  W  LSG              +K+        +      +    
Sbjct: 43  LRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQ 102

Query: 157 PATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVM 216
              +QI  D+PR  P    L          R+L  ++ R    GY QG+N +     +V 
Sbjct: 103 DTYRQIHIDIPRMSPEALILQPKV-TEIFERILFIWAIRHPASGYVQGINDLVTPFFVVF 161

Query: 217 KT------------------------EEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRV 252
                                     E D +W ++ LL+ +  N  YT    G  ++ ++
Sbjct: 162 ICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLLDGIQDN--YTFAQPGIQMKVKM 219

Query: 253 FKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEG---AK 309
            ++L+ +   ++  HL+  +      A  W   L  + +P   T+R+WD    E    + 
Sbjct: 220 LEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSH 279

Query: 310 VLFHVALAIFK 320
              +V  A   
Sbjct: 280 FHLYVCAAFLV 290

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294

 Score =  149 bits (378), Expect = 4e-43
 Identities = 48/255 (18%), Positives = 81/255 (31%), Gaps = 12/255 (4%)

Query: 77  ANWYLQPQIASISEGIALKSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKK 136
           + +Y +     + E  +L+  LK   L          R  +P + R  VW  L G     
Sbjct: 12  SVYYEKVGFRGVEEKKSLEILLKDDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPH 71

Query: 137 STVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRD 196
                       K     V  A K +      T     +L        L    +  S   
Sbjct: 72  HESHAKVMMYR-KEQYLDVLHALKVVRFVSDATPQAEVYLRMYQ----LESGKLPRSPSF 126

Query: 197 SDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDL 256
                 +    +A  +  +++   D +W+    +  +      T          + F+  
Sbjct: 127 PLEPDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQLN-----TKYRDSLPQLPKAFEQY 181

Query: 257 LVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVAL 316
           L  +  R+ +HL        L    WF   F+  LP  +  RVWD +     K+L  VA+
Sbjct: 182 LNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAV 241

Query: 317 AIFKV--RFLLTLNS 329
            I       ++ LNS
Sbjct: 242 EILLTFKIKVMALNS 256

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	100.0
2qq8_A	334	TBC1 domain family member 14; structural genomics	100.0
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	100.0
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	100.0
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	100.0
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	100.0
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	100.0

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=100.00  E-value=4.1e-51  Score=384.62  Aligned_cols=220  Identities=32%  Similarity=0.566  Sum_probs=200.5

Q ss_pred             CCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccC------chHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCC
Q 020189          104 ANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTV------PESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLD  177 (329)
Q Consensus       104 ~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~------~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~  177 (329)
                      .+.++|++++++|||+.+|+.||+.|+|+.....+.      ..+.|.++.+.    ..+..++|++|++||+|++++|.
T Consensus        47 ~~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~~~~~~~~~~~Y~~l~~~----~~~~~~~I~~Dv~Rt~~~~~~f~  122 (331)
T 3qye_A           47 FDMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKDVPYKELLKQ----LTSQQHAILIDLGRTFPTHPYFS  122 (331)
T ss_dssp             CCHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCCCSSSCCCCCCHHHHTTS----CCTTHHHHHHHHTTSSTTSTTTC
T ss_pred             CCHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcchhhhhhchHHHHHHHHh----cCCchhHHHHhhcccCCCchhhc
Confidence            478999999999999999999999999987643221      23568877654    34567899999999999999998


Q ss_pred             Cc--chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHH
Q 020189          178 TP--DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKD  255 (329)
Q Consensus       178 ~~--~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (329)
                      .+  .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++++++.++++|.+++++++..+.+++.
T Consensus       123 ~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~-~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~  201 (331)
T 3qye_A          123 AQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHM-SEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSR  201 (331)
T ss_dssp             STTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTS-CHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHH
T ss_pred             CCCcccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHh-hHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHH
Confidence            76  6899999999999999999999999999999999999 89999999999999987789999999999999999999


Q ss_pred             HHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhhh--hhccC
Q 020189          256 LLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVRF--LLTLN  328 (329)
Q Consensus       256 ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~~--il~l~  328 (329)
                      +++.++|+|++||++.|+++.+|+++||+|+|++.+|++.++||||+|+++|.++++++|+|||+.++  |+.++
T Consensus       202 ll~~~~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~  276 (331)
T 3qye_A          202 LLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHE  276 (331)
T ss_dssp             HHHHHCHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCC
T ss_pred             HHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999943  66543

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.7e-51  Score=387.58  Aligned_cols=220  Identities=26%  Similarity=0.467  Sum_probs=196.2

Q ss_pred             CHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcC----------------------CCCcccchh
Q 020189          105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEG----------------------KVTPATKQI  162 (329)
Q Consensus       105 ~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~----------------------~~~~~~~qI  162 (329)
                      +.++||+++++|||+++|+.||+.++|+...   ...+.|+.+++....                      ...+..+||
T Consensus        37 ~~~~lr~l~~~GIP~~lR~~vW~~llg~~~~---~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~I  113 (334)
T 2qq8_A           37 CSRKVRDLWWQGIPPSVRGKVWSLAIGNELN---ITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADREASLELI  113 (334)
T ss_dssp             CCHHHHHHHHTCCCHHHHHHHHHHHHCCTTC---CCHHHHHHHHHHHHHHC----------------------CCHHHHH
T ss_pred             ChHHHHHHHHCCCCHHHHHHHHHHHhCCccc---cCHHHHHHHHHHHHHHHHHhccccccCcccccccccccchhHHHHH
Confidence            6789999999999999999999999998532   234567766543210                      013456899


Q ss_pred             hhccCCcCCCCCCCCCc-chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCC
Q 020189          163 DHDLPRTFPGHPWLDTP-DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTN  241 (329)
Q Consensus       163 ~~Dl~RT~~~~~~f~~~-~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~  241 (329)
                      ++||+||+|++++|+.+ .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++|+++.+.++|..
T Consensus       114 ~~Dv~RT~p~~~~F~~~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~-~E~~aF~~~~~l~~~~~~~~~~~~  192 (334)
T 2qq8_A          114 KLDISRTFPNLCIFQQGGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNL-DTADAFIAFSNLLNKPCQMAFFRV  192 (334)
T ss_dssp             HHHHHTSSGGGCSSSTTSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHS-CHHHHHHHHHHHHTSHHHHHHHSS
T ss_pred             HHHHhhcCCCchhhcCCCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhHHhccCC
Confidence            99999999999999875 5799999999999999999999999999999999999 899999999999998876789999


Q ss_pred             CchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhh
Q 020189          242 NLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV  321 (329)
Q Consensus       242 ~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~  321 (329)
                      +.++++..+.+++.+++.++|+|++||++.|+++.+|+++||+|+|++.+|++.++||||+|+++|.++++++|+|||+.
T Consensus       193 ~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~valaiL~~  272 (334)
T 2qq8_A          193 DHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKL  272 (334)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hh--hhccC
Q 020189          322 RF--LLTLN  328 (329)
Q Consensus       322 ~~--il~l~  328 (329)
                      .+  |+.++
T Consensus       273 ~~~~Ll~~d  281 (334)
T 2qq8_A          273 FEDILTKMD  281 (334)
T ss_dssp             THHHHHTCC
T ss_pred             HHHHHhcCC
Confidence            43  66543

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-51  Score=382.94  Aligned_cols=216  Identities=34%  Similarity=0.644  Sum_probs=197.4

Q ss_pred             CHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc--chH
Q 020189          105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP--DGH  182 (329)
Q Consensus       105 ~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~--~~~  182 (329)
                      ++++||+++++|||+.+|+.||+.++|+......  .+.|.++.+    ..++..++|++|++||+|++++|..+  .++
T Consensus        22 ~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~~~~--~~~Y~~l~~----~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~   95 (310)
T 3hzj_A           22 RPKGLSTLVKSGVPEALRAEVWQLLAGCHDNQAM--LDRYRILIT----KDSAQESVITRDIHRTFPAHDYFKDTGGDGQ   95 (310)
T ss_dssp             CCTTHHHHHHHCCCGGGHHHHHHHHTTCCCCHHH--HHHHHHHTT----SCCTTHHHHHHHHTTSSTTSTTTSSTTSHHH
T ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHCCCcchhH--HHHHHHHHh----ccCCcHHHHHHHHHhhCCCchhhcCCCchhH
Confidence            6789999999999999999999999998653221  245766543    34677899999999999999999876  579


Q ss_pred             HHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcH
Q 020189          183 ATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCP  262 (329)
Q Consensus       183 ~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P  262 (329)
                      +.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||+++|+++.++++|.+++++++..+.+++.+++.++|
T Consensus        96 ~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~-~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~~p  174 (310)
T 3hzj_A           96 ESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHM-PEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLP  174 (310)
T ss_dssp             HHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHS-CHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhC-CHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHhCh
Confidence            9999999999999999999999999999999999 899999999999998877999999999999999999999999999


Q ss_pred             HHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhhh--hhhcc
Q 020189          263 RIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKVR--FLLTL  327 (329)
Q Consensus       263 ~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~~--~il~l  327 (329)
                      +|++||++.|+++.+|+++||+|+|++.+|++.++||||+|+++|.++++++|+|+|+..  +|+.+
T Consensus       175 ~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~  241 (310)
T 3hzj_A          175 DLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA  241 (310)
T ss_dssp             HHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTC
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999999999999993  36554

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=100.00  E-value=1.6e-48  Score=369.01  Aligned_cols=219  Identities=24%  Similarity=0.424  Sum_probs=193.4

Q ss_pred             CHHHHHHHHHhCCCCchHHHHHHHhHcchhhhcc-------CchHHHHHHHHHhcC-----CCCcccchhhhccCCcCCC
Q 020189          105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG-----KVTPATKQIDHDLPRTFPG  172 (329)
Q Consensus       105 ~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~-----~~~~~~~qI~~Dl~RT~~~  172 (329)
                      +.++||+++++|||+.+|+.||+.++|+.+....       .....|.++.+....     ...+..+||++||+||+|+
T Consensus        39 d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~  118 (345)
T 2qfz_A           39 DLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPE  118 (345)
T ss_dssp             CHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSCH
T ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCCc
Confidence            7799999999999999999999999998532211       113568888776432     1235678999999999999


Q ss_pred             CCCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhc------------------------CHHHHHHHHHH
Q 020189          173 HPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK------------------------TEEDAFWMLAV  228 (329)
Q Consensus       173 ~~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~------------------------~Ee~aF~~l~~  228 (329)
                       ++|+.+.+++.|+|||.+|+.+||++|||||||+|||+|++++.                        +|++|||||++
T Consensus       119 -~~F~~~~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f~~  197 (345)
T 2qfz_A          119 -ALILQPKVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCMSK  197 (345)
T ss_dssp             -HHHTSHHHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             -cccCCchHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHHHH
Confidence             99999999999999999999999999999999999999998763                        29999999999


Q ss_pred             HHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCc
Q 020189          229 LLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGA  308 (329)
Q Consensus       229 l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~  308 (329)
                      +|+++  +++|..++++++..+.+++.+++.++|+|++||++.|+++.+|+++||+|+|++++|++.++||||+|+++|.
T Consensus       198 lm~~~--~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~g~  275 (345)
T 2qfz_A          198 LLDGI--QDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPD  275 (345)
T ss_dssp             HHHTS--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTSTT
T ss_pred             HHHcc--ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhCCC
Confidence            99986  6899999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             h---HHHHHHHHHHhhh--hhhc
Q 020189          309 K---VLFHVALAIFKVR--FLLT  326 (329)
Q Consensus       309 ~---~l~~~alailk~~--~il~  326 (329)
                      +   +++++|+|+|...  +|+.
T Consensus       276 ~~~~~~~~v~~AiL~~~~~~ll~  298 (345)
T 2qfz_A          276 GFSHFHLYVCAAFLVRWRKEILE  298 (345)
T ss_dssp             TTTTHHHHHHHHHHHHTHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHh
Confidence            6   7899999999883  3553

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=100.00  E-value=8.3e-48  Score=369.80  Aligned_cols=201  Identities=27%  Similarity=0.481  Sum_probs=181.2

Q ss_pred             CHHHHHHHHHhCCCCchHHHHHHHhHcchhhhcc-------CchHHHHHHHHHhcC----CCCcccchhhhccCCcCCCC
Q 020189          105 NAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKST-------VPESYYNDLTKAVEG----KVTPATKQIDHDLPRTFPGH  173 (329)
Q Consensus       105 ~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~-------~~~~~y~~l~~~~~~----~~~~~~~qI~~Dl~RT~~~~  173 (329)
                      +.++||+++++|||+.+|+.||+.|+|+.+....       .....|.+++++...    .+.+..+||++||+||+|++
T Consensus        22 d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~~  101 (396)
T 1fkm_A           22 NQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHI  101 (396)
T ss_dssp             CHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTTS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCCc
Confidence            7899999999999999999999999998643221       113568888876432    23456789999999999999


Q ss_pred             CCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhc---------------------C-------HHHHHHH
Q 020189          174 PWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK---------------------T-------EEDAFWM  225 (329)
Q Consensus       174 ~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~---------------------~-------Ee~aF~~  225 (329)
                      ++|+.+.+++.|+|||.+|+.+||++|||||||+|||+||+++.                     +       |++||||
T Consensus       102 ~~F~~~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~  181 (396)
T 1fkm_A          102 PLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWC  181 (396)
T ss_dssp             GGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHHHH
T ss_pred             ccccCchHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHHHH
Confidence            99999999999999999999999999999999999999998751                     2       9999999


Q ss_pred             HHHHHhhhccccccCCCchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHh
Q 020189          226 LAVLLENVLVNDCYTNNLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFY  305 (329)
Q Consensus       226 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~  305 (329)
                      |+++|+++  +++|.+++++++..+.+++.+|+.++|+|++||+++|+++.+|+++||+|+|++.+|++.++||||+||+
T Consensus       182 f~~lm~~~--~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~l~  259 (396)
T 1fkm_A          182 LTKLLEQI--TDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS  259 (396)
T ss_dssp             HHHHHGGG--GGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHH--HHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            99999985  7899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 020189          306 EG  307 (329)
Q Consensus       306 eG  307 (329)
                      +|
T Consensus       260 eg  261 (396)
T 1fkm_A          260 ET  261 (396)
T ss_dssp             HH
T ss_pred             CC
Confidence            98

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=100.00  E-value=2.4e-46  Score=346.26  Aligned_cols=214  Identities=16%  Similarity=0.238  Sum_probs=188.3

Q ss_pred             CCHHHHHHHHHhC---CCCchHHHHHHHhHcchhhhccCchHHHHHHHHHhcCCCCcccchhhhccCCcCCCCCCCCCc-
Q 020189          104 ANAITLKKLIRKG---IPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHPWLDTP-  179 (329)
Q Consensus       104 ~~~~kLk~~i~~G---IP~~~R~~vW~~llg~~~~~~~~~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~~f~~~-  179 (329)
                      .+.++||++++.|   +|+++|+.||+.|+|+.......   +|.....    ..++..+||++||+||+|+++.|.++ 
T Consensus        32 ~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~---~~~~~~~----~~~~~~~qI~~Dv~RT~~~~~~~~~~~  104 (292)
T 4hl4_A           32 TDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP---ISGKNLR----QMSKDYQQVLLDVRRSLRRFPPGMPEE  104 (292)
T ss_dssp             CCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS---CCCTTHH----HHCTTHHHHHHHHHTTGGGSCTTSCHH
T ss_pred             ccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC---chhhhhc----ccchhHHHHHHhhhhhhhhccCCCCHH
Confidence            4789999999754   89999999999999997654322   2322211    13678999999999999999998653 


Q ss_pred             ---chHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHHHHHH
Q 020189          180 ---DGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRVFKDL  256 (329)
Q Consensus       180 ---~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l  256 (329)
                         .+++.|+|||.||+.+||++|||||||+|||+||+++ +|++|||||++++++.. +++|.+++.+++..+.+++.+
T Consensus       105 ~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~-~e~~aF~~l~~l~~~~l-~~~~~~~~~~~~~~~~~l~~l  182 (292)
T 4hl4_A          105 QREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVV-GERLATSLVEKLSTHHL-RDFMDPTMDNTKHILNYLMPI  182 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHH-CHHHHHHHHHHHHHTTT-TGGGCSSSCTTTGGGGGHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHc-CHHHHHHHHHHHHHHHH-HHhcccchHHHHHHHHHHHHH
Confidence               4688999999999999999999999999999999999 89999999999999865 799999999999999999999


Q ss_pred             HHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCC-hhhHHHHHHHHHhcCchHHHHHHHHHHhhh--hhhcc
Q 020189          257 LVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLP-SETTLRVWDVLFYEGAKVLFHVALAIFKVR--FLLTL  327 (329)
Q Consensus       257 l~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp-~~~~lriWD~~l~eG~~~l~~~alailk~~--~il~l  327 (329)
                      ++.++|+|++||++.+++ .+|+++||+|+|++++| ++.++||||+|+++|..+++++|+||+..+  +|+..
T Consensus       183 l~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~  255 (292)
T 4hl4_A          183 IDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDC  255 (292)
T ss_dssp             HHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTS
T ss_pred             HHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcC
Confidence            999999999999999994 79999999999999996 999999999999999999999999999994  36654

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=100.00  E-value=2.6e-36  Score=277.90  Aligned_cols=207  Identities=20%  Similarity=0.282  Sum_probs=158.4

Q ss_pred             CCCHHHHHHHHHhC-CCCchHHHHHHHhHcchhhhccC-------chHHHHHHHHHhcCCCCcccchhhhccCCcCCCCC
Q 020189          103 LANAITLKKLIRKG-IPPVLRPKVWFSLSGAAKKKSTV-------PESYYNDLTKAVEGKVTPATKQIDHDLPRTFPGHP  174 (329)
Q Consensus       103 ~~~~~kLk~~i~~G-IP~~~R~~vW~~llg~~~~~~~~-------~~~~y~~l~~~~~~~~~~~~~qI~~Dl~RT~~~~~  174 (329)
                      ..|.+|||+++++| ||+.+|+.||+.|+|+.+...+.       ....|++++++.     ...+||+.+.++    +.
T Consensus        37 ~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~-----~~~r~I~~~tP~----~~  107 (294)
T 3qwl_A           37 RLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHAL-----KVVRFVSDATPQ----AE  107 (294)
T ss_dssp             BCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHH-----HHTTSCCTTSCH----HH
T ss_pred             CCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhh-----hhhhhhhccCch----HH
Confidence            45899999999999 99999999999999984433222       124577777662     234444443221    11


Q ss_pred             CCCCcchHHHHHH--HHHHhhhcCCCCCccccchHHHHHHHHhhcCHHHHHHHHHHHHhhhccccccCCCchhhhHHHHH
Q 020189          175 WLDTPDGHATLRR--VLVGYSFRDSDVGYCQGLNYVAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTNNLSGCHVEQRV  252 (329)
Q Consensus       175 ~f~~~~~~~~L~r--VL~ay~~~np~igY~QGm~~Iaa~LL~~~~~Ee~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  252 (329)
                      .|.....   +.+  ...++. .+++ .++|||..||+++++++.+|++|||||+++|++.  +++|.++++|++.   .
T Consensus       108 vfl~~~~---~~~~~l~~~~~-~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~l--~~~f~~~~~gl~~---~  177 (294)
T 3qwl_A          108 VYLRMYQ---LESGKLPRSPS-FPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQL--NTKYRDSLPQLPK---A  177 (294)
T ss_dssp             HHHHHHH---HHHTCCCSSTT-SCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHH--HTTTTTTGGGHHH---H
T ss_pred             HHHHHHH---ccccccccccc-CCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHhhCCChhHHHH---H
Confidence            1111000   000  011111 1233 2569999999999988889999999999999984  6899999998875   4


Q ss_pred             HHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCchHHHHHHHHHHhh--hhhhccC
Q 020189          253 FKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGAKVLFHVALAIFKV--RFLLTLN  328 (329)
Q Consensus       253 ~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~~~l~~~alailk~--~~il~l~  328 (329)
                      ++.+++.++|+|++||+++|+.+.+++.+||+|+|++.+|++.++||||+++++|.++++++|+|+|+.  ..|+.++
T Consensus       178 l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll~~~  255 (294)
T 3qwl_A          178 FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALN  255 (294)
T ss_dssp             HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHhCCC
Confidence            589999999999999999999888888899999999999999999999999999999999999999998  4476665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d1fkma1	194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	6e-31
d1fkma2	188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	2e-16

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  113 bits (283), Expect = 6e-31
 Identities = 43/181 (23%), Positives = 63/181 (34%), Gaps = 39/181 (21%)

Query: 95  KSSLKLSSLANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPESYYNDLTKAVEGK 154
            + LK  ++ N   L+++   GIP + RP VW  L G     +   E +     K     
Sbjct: 11  DNILKDKTIINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDS 70

Query: 155 V-----------TPATKQIDHDLPRTFPGHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQ 203
           +            P   QI+ D+PRT P  P         +L+R+L  ++ R    GY Q
Sbjct: 71  LKHTFSDQHSRDIPTWHQIEIDIPRTNPHIPLYQFKSVQNSLQRILYLWAIRHPASGYVQ 130

Query: 204 GLNYVAALLLLVMKT----------------------------EEDAFWMLAVLLENVLV 235
           G+N +         T                            E D FW L  LLE +  
Sbjct: 131 GINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITD 190

Query: 236 N 236
           N
Sbjct: 191 N 191

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.1 bits (181), Expect = 2e-16
 Identities = 12/82 (14%), Positives = 26/82 (31%)

Query: 243 LSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDV 302
             G   + +    L+ +    + +H +    +    A  W  CL  +     T +R+WD 
Sbjct: 2   QPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDT 61

Query: 303 LFYEGAKVLFHVALAIFKVRFL 324
              E ++ +             
Sbjct: 62  YLSETSQEVTSSYSMSSNDIKP 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d1fkma1	194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.97
d1fkma2	188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.58

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.6e-31  Score=228.28  Aligned_cols=135  Identities=32%  Similarity=0.523  Sum_probs=108.8

Q ss_pred             CCCHHHHHHHHHhCCCCchHHHHHHHhHcchhhhccCch-------HHHHHHHHHhcCC----CCcccchhhhccCCcCC
Q 020189          103 LANAITLKKLIRKGIPPVLRPKVWFSLSGAAKKKSTVPE-------SYYNDLTKAVEGK----VTPATKQIDHDLPRTFP  171 (329)
Q Consensus       103 ~~~~~kLk~~i~~GIP~~~R~~vW~~llg~~~~~~~~~~-------~~y~~l~~~~~~~----~~~~~~qI~~Dl~RT~~  171 (329)
                      ..+.++||+++++|||+.+|+.||+.++|+.+...+...       ..|.+..+.....    ..+..+||++||+||+|
T Consensus        19 ~i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~   98 (194)
T d1fkma1          19 IINQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNP   98 (194)
T ss_dssp             BCCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSST
T ss_pred             CCCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHHHhcCC
Confidence            358899999999999999999999999998644332221       1233333322111    12456799999999999


Q ss_pred             CCCCCCCcchHHHHHHHHHHhhhcCCCCCccccchHHHHHHHHhhc----------------------------CHHHHH
Q 020189          172 GHPWLDTPDGHATLRRVLVGYSFRDSDVGYCQGLNYVAALLLLVMK----------------------------TEEDAF  223 (329)
Q Consensus       172 ~~~~f~~~~~~~~L~rVL~ay~~~np~igY~QGm~~Iaa~LL~~~~----------------------------~Ee~aF  223 (329)
                      ++++|+.+.+++.|+|||.||+.+||++|||||||+|||+|++++.                            .|++||
T Consensus        99 ~~~~f~~~~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~F  178 (194)
T d1fkma1          99 HIPLYQFKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTF  178 (194)
T ss_dssp             TSGGGGSHHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHH
T ss_pred             cccccccchhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHHH
Confidence            9999999999999999999999999999999999999999998762                            289999


Q ss_pred             HHHHHHHhhhcccccc
Q 020189          224 WMLAVLLENVLVNDCY  239 (329)
Q Consensus       224 ~~l~~l~~~~~~~~~~  239 (329)
                      |||+++|+++  +++|
T Consensus       179 ~~f~~lm~~i--~d~y  192 (194)
T d1fkma1         179 WCLTKLLEQI--TDNY  192 (194)
T ss_dssp             HHHHHHHGGG--GGGS
T ss_pred             HHHHHHHHhh--hccC
Confidence            9999999985  4555

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=2e-15  Score=128.06  Aligned_cols=67  Identities=18%  Similarity=0.402  Sum_probs=64.9

Q ss_pred             CchhhhHHHHHHHHHHHhhcHHHHhhhhhcCCChhhhhHHHHHHHccCCCChhhHHHHHHHHHhcCc
Q 020189          242 NLSGCHVEQRVFKDLLVKQCPRIASHLEALDFDVSLVATEWFLCLFSKSLPSETTLRVWDVLFYEGA  308 (329)
Q Consensus       242 ~~~~~~~~~~~~~~ll~~~~P~L~~hl~~~~i~~~~~~~~WfltlF~~~lp~~~~lriWD~~l~eG~  308 (329)
                      |+||++..+.+++.+++.++|+||+||++.|+++.+|+++||+|+|++.+|++.++||||.|+++|.
T Consensus         1 gqpGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~   67 (188)
T d1fkma2           1 GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETS   67 (188)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCc
Confidence            5789999999999999999999999999999999999999999999999999999999999999876