Citrus Sinensis ID: 020200

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MMASRVLSRATRCVGRRALLLVPTSGKQHSPALSNQFHSLVFESPNKLTQVSLFHQTTLNSSIFQRFGFSSASPEPNEKEQGSAPDNNGAESPKPNRDAKDSVDNNGAEAPKPNGDAKASDEGMEATDRTKESDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQAVENDRAENNDQA
cHHHHHHHHHHHHHHHHHHcccccccccccccHHcccccccccccccccHHHHcccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccHHHccccccccccccEEEEEEccEEcccccccccEEEEEcccccccccccccc
cHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHccccccccccEEEEEEccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccHcHcHEEEEccccccccccEEEEEEccEEEcccEEEEEEEEEEcccccccccHcccc
MMASRVLSRATRCVGRRAlllvptsgkqhspalsnqFHSLVfespnkltqvsLFHQTTlnssifqrfgfssaspepnekeqgsapdnngaespkpnrdakdsvdnngaeapkpngdakasdegmeatdrtkesdseseiELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLgrassvvkenflkidpsndtagaVPLLKSLLEGVEMTEKQLGEVFKKFgvekfdpinepfdphrhnamfqlpdnskppgtvaHVLKSGYTLYErvirpaevgVTQAVEndraenndqa
mmasrvlsratrcvgrRALLLvptsgkqhspALSNQFHSLVFESPNKLTQVSLFHQTTLNSSIFQRFGFSSASpepnekeqgsapdnngaespkpnrdakdsvdnngaeapkpngdakasdegmeatdrtkesdseseielsrddLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKEnflkidpsndtagAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVgvtqavendraenndqa
MMASRVLSRATRCVGRRALLLVPTSGKQHSPALSNQFHSLVFESPNKLTQVSLFHQTTLNSSIFQRFGFSSASPEPNEKEQGSAPDNNGAESPKPNRDAKDSVDNNGAEAPKPNGDAKASDEGMEATDRTKESDSESEIELSRDDlvkllkereellmakNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQAVENDRAENNDQA
**********TRCVGRRALLLVP*************FHSLVFESPNKLTQVSLFHQTTLNSSIFQRFG*****************************************************************************************************************************KFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPI***********************TVAHVLKSGYTLYERVIRPAEVGVT**************
*********AT************************************LTQ**************************************************************************************************************NEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKE**************VPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVG****************
*********ATRCVGRRALLLVPTSGKQHSPALSNQFHSLVFESPNKLTQVSLFHQTTLNSSIFQRFGFS********************************VDNNGA********************************LSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQAVEN*********
*M**RV*****RCVGRRALLLVPTSGKQHSPALSNQFHSLVFESPNKLTQVSLFHQTTLNSSIFQRFGF*********************************************************************IELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQA************
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
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MMASRVLSRATRCVGRRALLLVPTSGKQHSPALSNQFHSLVFESPNKLTQVSLFHQTTLNSSIFQRFGFSSASPEPNEKEQGSAPDNNGAESPKPNRDAKDSVDNNGAEAPKPNGDAKASDEGMEATDRTKESDSESEIELSRDDxxxxxxxxxxxxxxxxxxxxxxxxxVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQAVENDRAENNDQA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
Q3SW78197 Protein GrpE OS=Nitrobact yes no 0.531 0.888 0.418 4e-34
Q6NCY6207 Protein GrpE OS=Rhodopseu yes no 0.446 0.710 0.438 4e-32
B3Q970207 Protein GrpE OS=Rhodopseu yes no 0.446 0.710 0.438 6e-32
Q07US4207 Protein GrpE OS=Rhodopseu yes no 0.452 0.719 0.446 9e-32
A4YJR1206 Protein GrpE OS=Bradyrhiz yes no 0.425 0.679 0.466 9e-32
B6JCI1200 Protein GrpE OS=Oligotrop yes no 0.449 0.74 0.455 1e-31
P48604213 GrpE protein homolog, mit yes no 0.550 0.849 0.402 8e-31
Q79V15201 Protein GrpE OS=Bradyrhiz yes no 0.443 0.726 0.461 1e-30
P38523228 GrpE protein homolog, mit yes no 0.492 0.710 0.409 2e-30
Q13E58206 Protein GrpE OS=Rhodopseu yes no 0.440 0.703 0.437 2e-30
>sp|Q3SW78|GRPE_NITWN Protein GrpE OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=grpE PE=3 SV=1 Back     alignment and function desciption
 Score =  145 bits (366), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 77/184 (41%), Positives = 120/184 (65%), Gaps = 9/184 (4%)

Query: 127 TDRTKESDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTI 186
           TD++ E  +E E  +S+  ++    E ++ L A N+++ + +D+ LR+ AEMEN++ RT 
Sbjct: 8   TDKSGEPAAEVEPVVSKPYVMPDDPE-DDALDALNKQLAEAKDRTLRTLAEMENLRKRTA 66

Query: 187 REAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEGVE 246
           RE  +++ + I  FA+ +L++ADNL RA   V        P++  A   P LK+L+EGVE
Sbjct: 67  REVSDARTYGISGFARDVLEIADNLQRALDAV--------PADARAAPDPGLKALIEGVE 118

Query: 247 MTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERV 306
           +TE+ L    +K GV+KFDP  E FDP+ H AM+++PD S P GTVA V+++GY + ERV
Sbjct: 119 LTERSLHNALEKHGVKKFDPAGEKFDPNVHQAMYEVPDPSIPVGTVAQVIQAGYMIGERV 178

Query: 307 IRPA 310
           +RPA
Sbjct: 179 LRPA 182
Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with dnaK and grpE. It is the nucleotide exchange factor for dnaK and may function as a thermosensor. Unfolded proteins bind initially to dnaJ; upon interaction with the dnaJ-bound protein, dnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from dnaK; ATP binding to dnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between dnaJ, dnaK and grpE are required for fully efficient folding.
Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) (taxid: 323098)
>sp|Q6NCY6|GRPE_RHOPA Protein GrpE OS=Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) GN=grpE PE=3 SV=2 Back     alignment and function description
>sp|B3Q970|GRPE_RHOPT Protein GrpE OS=Rhodopseudomonas palustris (strain TIE-1) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|Q07US4|GRPE_RHOP5 Protein GrpE OS=Rhodopseudomonas palustris (strain BisA53) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|A4YJR1|GRPE_BRASO Protein GrpE OS=Bradyrhizobium sp. (strain ORS278) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|B6JCI1|GRPE_OLICO Protein GrpE OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|P48604|GRPE_DROME GrpE protein homolog, mitochondrial OS=Drosophila melanogaster GN=Roe1 PE=2 SV=2 Back     alignment and function description
>sp|Q79V15|GRPE_BRAJA Protein GrpE OS=Bradyrhizobium japonicum (strain USDA 110) GN=grpE PE=3 SV=1 Back     alignment and function description
>sp|P38523|GRPE_YEAST GrpE protein homolog, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MGE1 PE=1 SV=1 Back     alignment and function description
>sp|Q13E58|GRPE_RHOPS Protein GrpE OS=Rhodopseudomonas palustris (strain BisB5) GN=grpE PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
255580752308 Protein grpE, putative [Ricinus communis 0.924 0.987 0.636 1e-106
359494074298 PREDICTED: protein grpE-like [Vitis vini 0.884 0.976 0.612 5e-95
147811306413 hypothetical protein VITISV_018795 [Viti 0.905 0.721 0.584 2e-92
359806326290 uncharacterized protein LOC100812682 [Gl 0.869 0.986 0.569 9e-91
224116576244 predicted protein [Populus trichocarpa] 0.732 0.987 0.679 2e-89
3851640304 chaperone GrpE type 2 [Nicotiana tabacum 0.905 0.980 0.576 2e-89
224133294265 predicted protein [Populus trichocarpa] 0.768 0.954 0.662 3e-88
356527097289 PREDICTED: protein grpE-like [Glycine ma 0.875 0.996 0.546 3e-86
297792997302 hypothetical protein ARALYDRAFT_495605 [ 0.902 0.983 0.532 4e-85
18416821327 molecular chaperone GrpE [Arabidopsis th 0.924 0.929 0.547 4e-85
>gi|255580752|ref|XP_002531197.1| Protein grpE, putative [Ricinus communis] gi|223529199|gb|EEF31174.1| Protein grpE, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 210/330 (63%), Positives = 251/330 (76%), Gaps = 26/330 (7%)

Query: 1   MMASRV-LSRATRCVGRRALLLVPTSGKQHSPALSNQFHSLVFESPNKLT--QVSLFHQT 57
           M+ SRV LSRA+R VGRR+LLL+  S KQ  P  SNQ  SLV  + N+    QVSLFH +
Sbjct: 1   MLISRVVLSRASRSVGRRSLLLLSPSQKQQLPIFSNQIESLVHVNSNQFVAGQVSLFHHS 60

Query: 58  TLNSSIFQRFGF-SSASPEPNEKEQGSAPDNNGAESPKPNRDAKDSVDNNGAEAPKPNGD 116
             +SS FQRFGF SSASPE NEKE GS  +NN               D+   E    NGD
Sbjct: 61  AFSSSPFQRFGFTSSASPEANEKE-GSTAENNA--------------DSTNVEPETSNGD 105

Query: 117 AKASDEGMEATDRTKESDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFA 176
            K S+E       T+E DS++E +LS DDLVKL+ E+EELL  K++E+++MQDKVLR++A
Sbjct: 106 TKPSNE-------TREPDSDTEGDLSMDDLVKLVAEKEELLKLKHKEIEKMQDKVLRTYA 158

Query: 177 EMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVP 236
           EMENV +RT REAENS+KFAIQNFAK LLDVADNLGRASSVVK+++ KID S DTAGAVP
Sbjct: 159 EMENVMERTKREAENSRKFAIQNFAKGLLDVADNLGRASSVVKDSYSKIDTSTDTAGAVP 218

Query: 237 LLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVL 296
           LLK+LLEGVEMTEKQL EVF+K GVEK+DP +EPFDPHRHNA+F++PD+SKPPGTVA VL
Sbjct: 219 LLKTLLEGVEMTEKQLAEVFRKSGVEKYDPRDEPFDPHRHNAVFEVPDSSKPPGTVAVVL 278

Query: 297 KSGYTLYERVIRPAEVGVTQAVENDRAENN 326
           K+GY L++RVIRPAEVGVT+ VEND A NN
Sbjct: 279 KAGYLLHDRVIRPAEVGVTKEVENDTASNN 308

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359494074|ref|XP_002277588.2| PREDICTED: protein grpE-like [Vitis vinifera] gi|297737494|emb|CBI26695.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147811306|emb|CAN76715.1| hypothetical protein VITISV_018795 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359806326|ref|NP_001240970.1| uncharacterized protein LOC100812682 [Glycine max] gi|255638729|gb|ACU19669.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|224116576|ref|XP_002317335.1| predicted protein [Populus trichocarpa] gi|222860400|gb|EEE97947.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|3851640|gb|AAC72387.1| chaperone GrpE type 2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|224133294|ref|XP_002321532.1| predicted protein [Populus trichocarpa] gi|222868528|gb|EEF05659.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356527097|ref|XP_003532150.1| PREDICTED: protein grpE-like [Glycine max] Back     alignment and taxonomy information
>gi|297792997|ref|XP_002864383.1| hypothetical protein ARALYDRAFT_495605 [Arabidopsis lyrata subsp. lyrata] gi|297310218|gb|EFH40642.1| hypothetical protein ARALYDRAFT_495605 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18416821|ref|NP_567757.1| molecular chaperone GrpE [Arabidopsis thaliana] gi|21593024|gb|AAM64973.1| grpE like protein [Arabidopsis thaliana] gi|26451456|dbj|BAC42827.1| putative grpE protein [Arabidopsis thaliana] gi|29824143|gb|AAP04032.1| putative grpE protein [Arabidopsis thaliana] gi|332659851|gb|AEE85251.1| molecular chaperone GrpE [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
TAIR|locus:2116277327 AR192 [Arabidopsis thaliana (t 0.978 0.984 0.538 1e-82
TAIR|locus:2161615302 MGE1 "mitochondrial GrpE 1" [A 0.693 0.754 0.556 1.2e-60
GENEDB_PFALCIPARUM|PF11_0258301 PF11_0258 "co-chaperone GrpE, 0.753 0.823 0.313 6.9e-31
UNIPROTKB|Q8IIB6301 PF11_0258 "Co-chaperone GrpE, 0.753 0.823 0.313 6.9e-31
UNIPROTKB|Q5ZHV6222 GRPEL1 "GrpE protein homolog" 0.443 0.657 0.448 8.6e-30
SGD|S000005758228 MGE1 "Mitochondrial matrix coc 0.556 0.802 0.364 4.4e-29
CGD|CAL0002414242 MGE1 [Candida albicans (taxid: 0.458 0.623 0.428 1.5e-28
UNIPROTKB|E2RAZ6230 GRPEL1 "Uncharacterized protei 0.446 0.639 0.419 2e-28
FB|FBgn0014877213 Roe1 "Roe1" [Drosophila melano 0.443 0.685 0.438 3.1e-28
RGD|70947217 Grpel1 "GrpE-like 1, mitochond 0.443 0.672 0.448 7.3e-27
TAIR|locus:2116277 AR192 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 829 (296.9 bits), Expect = 1.0e-82, P = 1.0e-82
 Identities = 180/334 (53%), Positives = 228/334 (68%)

Query:     1 MMASRVLSRATRCVG-RRALLLVPTSGKQHSPALSNQFHSLVFESPNKLTQVSLFHQTTL 59
             M+  R+LSR TR  G R +L  V    +  +P  S++FHSL  +  +KL    +   + +
Sbjct:     1 MLVLRILSRVTRNAGIRSSLSAVTLPARNQTPVFSSRFHSLAHDFSHKLVPAQM---SMM 57

Query:    60 NSSIFQRFGFSSA-SPEPNEKEQGSAPDNNGAESPKPNRDAKD-SVDNNGAEAPKPNGDA 117
             +S   QRF FSS+ SPE +EK+  +       E  KP  +A    +D+   ++   +  A
Sbjct:    58 DSFALQRFNFSSSTSPESDEKKTHTEASKTSEE--KPTAEANQPGLDSESKDSVTDS--A 113

Query:   118 KASDEGME-ATDRTKESDSESEI-ELSRDDXXXXXXXXXXXXXXXNEEMKQMQDKVLRSF 175
             K   +G + A   + ESDSES+  ELS DD                EE+KQ++DKVLR++
Sbjct:   114 KRKRKGAKGAASSSSESDSESDDDELSADDLVKLVAEKEELLSEKEEEIKQLKDKVLRTY 173

Query:   176 AEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAV 235
             AEMENV DRT R+AEN+KK+A+QNFAK+LLDVADNLGRASSVVKE+F K+D S D+AGA 
Sbjct:   174 AEMENVMDRTRRDAENTKKYAVQNFAKSLLDVADNLGRASSVVKESFSKLDTSEDSAGAA 233

Query:   236 PLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHV 295
             PLLK+LLEGVEMTEKQL EVFKKFG+EK+DPINEPFDP+RHNA+FQ+PD SKP GTVAHV
Sbjct:   234 PLLKTLLEGVEMTEKQLAEVFKKFGMEKYDPINEPFDPNRHNAVFQVPDASKPEGTVAHV 293

Query:   296 LKSGYTLYERVIRPAEVGVTQAVENDRAENNDQA 329
             LKSGYTLY+RVIRPAEVGVTQ  EN   +    A
Sbjct:   294 LKSGYTLYDRVIRPAEVGVTQGGENQEEKKESDA 327
GO:0000774 "adenyl-nucleotide exchange factor activity" evidence=IEA
GO:0006457 "protein folding" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM
GO:0042803 "protein homodimerization activity" evidence=IEA
GO:0051087 "chaperone binding" evidence=IEA
GO:0005507 "copper ion binding" evidence=IDA
GO:0005739 "mitochondrion" evidence=IDA
GO:0009408 "response to heat" evidence=IEP
GO:0010286 "heat acclimation" evidence=IGI
GO:0006626 "protein targeting to mitochondrion" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
TAIR|locus:2161615 MGE1 "mitochondrial GrpE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
GENEDB_PFALCIPARUM|PF11_0258 PF11_0258 "co-chaperone GrpE, putative" [Plasmodium falciparum (taxid:5833)] Back     alignment and assigned GO terms
UNIPROTKB|Q8IIB6 PF11_0258 "Co-chaperone GrpE, putative" [Plasmodium falciparum 3D7 (taxid:36329)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZHV6 GRPEL1 "GrpE protein homolog" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
SGD|S000005758 MGE1 "Mitochondrial matrix cochaperone" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
CGD|CAL0002414 MGE1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAZ6 GRPEL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0014877 Roe1 "Roe1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
RGD|70947 Grpel1 "GrpE-like 1, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
cd00446137 cd00446, GrpE, GrpE is the adenine nucleotide exch 3e-56
pfam01025165 pfam01025, GrpE, GrpE 1e-54
COG0576193 COG0576, GrpE, Molecular chaperone GrpE (heat shoc 2e-46
PRK14141209 PRK14141, PRK14141, heat shock protein GrpE; Provi 2e-44
PRK14150193 PRK14150, PRK14150, heat shock protein GrpE; Provi 1e-34
PRK14140191 PRK14140, PRK14140, heat shock protein GrpE; Provi 2e-34
PRK14155208 PRK14155, PRK14155, heat shock protein GrpE; Provi 1e-31
PRK14139185 PRK14139, PRK14139, heat shock protein GrpE; Provi 2e-30
PRK14151176 PRK14151, PRK14151, heat shock protein GrpE; Provi 2e-26
PRK14153194 PRK14153, PRK14153, heat shock protein GrpE; Provi 1e-23
PRK14161178 PRK14161, PRK14161, heat shock protein GrpE; Provi 9e-23
PRK10325197 PRK10325, PRK10325, heat shock protein GrpE; Provi 5e-22
PRK14149191 PRK14149, PRK14149, heat shock protein GrpE; Provi 2e-21
PRK14158194 PRK14158, PRK14158, heat shock protein GrpE; Provi 2e-21
PRK14144199 PRK14144, PRK14144, heat shock protein GrpE; Provi 4e-21
PRK14148195 PRK14148, PRK14148, heat shock protein GrpE; Provi 8e-21
PRK14160211 PRK14160, PRK14160, heat shock protein GrpE; Provi 9e-20
PRK14162194 PRK14162, PRK14162, heat shock protein GrpE; Provi 1e-19
PRK14147172 PRK14147, PRK14147, heat shock protein GrpE; Provi 3e-19
PRK14156177 PRK14156, PRK14156, heat shock protein GrpE; Provi 2e-18
PRK14143238 PRK14143, PRK14143, heat shock protein GrpE; Provi 1e-17
PRK14159176 PRK14159, PRK14159, heat shock protein GrpE; Provi 7e-15
PRK14145196 PRK14145, PRK14145, heat shock protein GrpE; Provi 9e-14
PRK14157227 PRK14157, PRK14157, heat shock protein GrpE; Provi 3e-13
PRK14154208 PRK14154, PRK14154, heat shock protein GrpE; Provi 3e-13
PRK14146215 PRK14146, PRK14146, heat shock protein GrpE; Provi 7e-13
PRK14163214 PRK14163, PRK14163, heat shock protein GrpE; Provi 2e-08
PRK14164218 PRK14164, PRK14164, heat shock protein GrpE; Provi 1e-06
PRK14142223 PRK14142, PRK14142, heat shock protein GrpE; Provi 1e-04
>gnl|CDD|238252 cd00446, GrpE, GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases Back     alignment and domain information 
 Score =  178 bits (454), Expect = 3e-56
 Identities = 72/150 (48%), Positives = 95/150 (63%), Gaps = 14/150 (9%)

Query: 165 KQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLK 224
           ++++DK+LR+ AE EN + RT RE E ++K+AI+ FAK LL V DNL RA    K+    
Sbjct: 2   EELKDKLLRALAEFENYRKRTEREREEARKYAIEKFAKDLLPVLDNLERALEAAKKE--- 58

Query: 225 IDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPD 284
                        LK+L+EGVEMT KQL +V +K GVEK +P  EPFDP+ H A+ Q+P 
Sbjct: 59  -----------EELKNLVEGVEMTLKQLLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPS 107

Query: 285 NSKPPGTVAHVLKSGYTLYERVIRPAEVGV 314
               PGTV  VL+ GY L +RV+RPA V V
Sbjct: 108 PDVEPGTVVEVLQKGYKLGDRVLRPAMVVV 137

The GrpE dimer binds to the ATPase domain of Hsp70 catalyzing the dissociation of ADP, which enables rebinding of ATP, one step in the Hsp70 reaction cycle in protein folding. In eukaryotes, only the mitochondrial Hsp70, not the cytosolic form, is GrpE dependent. Length = 137
>gnl|CDD|216249 pfam01025, GrpE, GrpE Back     alignment and domain information
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|172630 PRK14141, PRK14141, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237627 PRK14155, PRK14155, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237621 PRK14139, PRK14139, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172640 PRK14151, PRK14151, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237630 PRK14161, PRK14161, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|182379 PRK10325, PRK10325, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172637 PRK14148, PRK14148, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237625 PRK14147, PRK14147, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237624 PRK14143, PRK14143, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172647 PRK14159, PRK14159, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184543 PRK14157, PRK14157, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237626 PRK14154, PRK14154, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|172635 PRK14146, PRK14146, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|184546 PRK14163, PRK14163, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237632 PRK14164, PRK14164, heat shock protein GrpE; Provisional Back     alignment and domain information
>gnl|CDD|237623 PRK14142, PRK14142, heat shock protein GrpE; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
PRK14143238 heat shock protein GrpE; Provisional 100.0
PRK14161178 heat shock protein GrpE; Provisional 100.0
PRK14148195 heat shock protein GrpE; Provisional 100.0
PRK14155208 heat shock protein GrpE; Provisional 100.0
PRK14153194 heat shock protein GrpE; Provisional 100.0
PRK14163214 heat shock protein GrpE; Provisional 100.0
PRK14141209 heat shock protein GrpE; Provisional 100.0
PRK14147172 heat shock protein GrpE; Provisional 100.0
PRK14151176 heat shock protein GrpE; Provisional 100.0
PRK14162194 heat shock protein GrpE; Provisional 100.0
PRK14139185 heat shock protein GrpE; Provisional 100.0
PRK14158194 heat shock protein GrpE; Provisional 100.0
PRK14145196 heat shock protein GrpE; Provisional 100.0
PRK14140191 heat shock protein GrpE; Provisional 100.0
COG0576193 GrpE Molecular chaperone GrpE (heat shock protein) 100.0
PRK14160211 heat shock protein GrpE; Provisional 100.0
PRK14150193 heat shock protein GrpE; Provisional 100.0
PRK14146215 heat shock protein GrpE; Provisional 100.0
PRK14144199 heat shock protein GrpE; Provisional 100.0
PRK14159176 heat shock protein GrpE; Provisional 100.0
PRK10325197 heat shock protein GrpE; Provisional 100.0
PRK14154208 heat shock protein GrpE; Provisional 100.0
PRK14149191 heat shock protein GrpE; Provisional 100.0
PRK14157227 heat shock protein GrpE; Provisional 100.0
KOG3003236 consensus Molecular chaperone of the GrpE family [ 100.0
PRK14156177 heat shock protein GrpE; Provisional 100.0
PRK14142223 heat shock protein GrpE; Provisional 100.0
PRK14164218 heat shock protein GrpE; Provisional 100.0
cd00446137 GrpE GrpE is the adenine nucleotide exchange facto 100.0
PF01025165 GrpE: GrpE; InterPro: IPR000740 Molecular chaperon 100.0
PF06156107 DUF972: Protein of unknown function (DUF972); Inte 85.03
PTZ00464211 SNF-7-like protein; Provisional 80.95
>PRK14143 heat shock protein GrpE; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.9e-47  Score=354.98  Aligned_cols=165  Identities=28%  Similarity=0.400  Sum_probs=148.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCC
Q 020200          147 VKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKID  226 (329)
Q Consensus       147 ~kl~~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~  226 (329)
                      .+.+..++..++.+++++++++++|+|++|||+|||||+.||++++++||+++|+++||||+|||+||+.+++..     
T Consensus        66 ~~~~~~l~~el~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~a~~~~~~~lLpV~DnLerAl~~~~~~-----  140 (238)
T PRK14143         66 AARLAQLEQELESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQLKCNTLSEILPVVDNFERARQQLKPE-----  140 (238)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhccccc-----
Confidence            344455666778889999999999999999999999999999999999999999999999999999999865320     


Q ss_pred             CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEE
Q 020200          227 PSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERV  306 (329)
Q Consensus       227 ~s~D~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRV  306 (329)
                        .      .....|.+||+||+++|.++|+++||++|+++|++|||++|+||++++++++++|||++|+|+||+|||||
T Consensus       141 --~------~~~~~l~~Gve~i~k~l~~~L~k~GV~~i~~~G~~FDP~~HEAv~~~~~~~~~~gtVv~v~qkGY~l~~RV  212 (238)
T PRK14143        141 --G------EEAQALHRSYQGLYKQLVDVLKRLGVSPMRVVGQEFDPNLHEAVLREPSDEHPEDVVLEELQRGYHLGGRV  212 (238)
T ss_pred             --c------hhHHHHHHHHHHHHHHHHHHHHHCCCeeeCCCCCCCChHHhheeeeecCCCCCcCeEEEEeeCCceeCCEe
Confidence              1      12357999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeEEEeecCCCCcccc
Q 020200          307 IRPAEVGVTQAVENDRAE  324 (329)
Q Consensus       307 LRPA~VvVak~~~~~e~~  324 (329)
                      ||||||+|++++......
T Consensus       213 LRpA~V~Vsk~~~~~~~~  230 (238)
T PRK14143        213 LRHAMVKVSMGPGPSSPA  230 (238)
T ss_pred             cccceEEECCCCCCCCCC
Confidence            999999999987655443

>PRK14161 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14148 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14155 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14153 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14163 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14141 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14147 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14151 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14162 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14139 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14158 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14145 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14140 heat shock protein GrpE; Provisional Back     alignment and domain information
>COG0576 GrpE Molecular chaperone GrpE (heat shock protein) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14160 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14150 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14146 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14144 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14159 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK10325 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14154 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14149 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14157 heat shock protein GrpE; Provisional Back     alignment and domain information
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK14156 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14142 heat shock protein GrpE; Provisional Back     alignment and domain information
>PRK14164 heat shock protein GrpE; Provisional Back     alignment and domain information
>cd00446 GrpE GrpE is the adenine nucleotide exchange factor of DnaK (Hsp70)-type ATPases Back     alignment and domain information
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress Back     alignment and domain information
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication Back     alignment and domain information
>PTZ00464 SNF-7-like protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
4ani_A213 Structural Basis For The Intermolecular Communicati 4e-23
1dkg_A197 Crystal Structure Of The Nucleotide Exchange Factor 3e-20
3a6m_A177 Crystal Structure Of Grpe From Thermus Thermophilus 3e-11
>pdb|4ANI|A Chain A, Structural Basis For The Intermolecular Communication Between Dnak And Grpe In The Dnak Chaperone System From Geobacillus Kaustophilus Hta426 Length = 213 Back     alignment and structure 
Iteration: 1

 Score =  105 bits (261), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 59/153 (38%), Positives = 87/153 (56%), Gaps = 14/153 (9%)
Query: 164 MKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFL 223
           + +M+ + LR +A+ EN + RT +E E ++K+  Q+ A  LL V DN  RA        L
Sbjct: 75  LSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERA--------L 126
Query: 224 KIDPSNDTAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLP 283
           KI+  N+ A      KS+L+G+EM  + L +  KK GVE  + + +PFDP+ H A+ Q  
Sbjct: 127 KIETDNEQA------KSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAE 180
Query: 284 DNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQ 316
                P TV   L+ GY L +RV+RPA V V+Q
Sbjct: 181 AEGYEPNTVVEELQKGYKLKDRVLRPAMVKVSQ 213
>pdb|1DKG|A Chain A, Crystal Structure Of The Nucleotide Exchange Factor Grpe Bound To The Atpase Domain Of The Molecular Chaperone Dnak Length = 197 Back     alignment and structure
>pdb|3A6M|A Chain A, Crystal Structure Of Grpe From Thermus Thermophilus Hb8 Length = 177 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
1dkg_A197 Nucleotide exchange factor GRPE; HSP70, GRPE, nucl 9e-58
4ani_A213 Protein GRPE; chaperone cycle, complementary assay 1e-54
3a6m_A177 Protein GRPE, HSP-70 cofactor; coiled-coil, four-h 4e-51
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 3e-04
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1 Length = 197 Back     alignment and structure
 Score =  184 bits (468), Expect = 9e-58
 Identities = 60/193 (31%), Positives = 94/193 (48%), Gaps = 13/193 (6%)

Query: 125 EATDRTKESDSESEIELSRDDLVKLLKEREELLMAKNEEMKQMQDKVLRSFAEMENVKDR 184
           E      E     E E S + +    ++   L     E   + +D +LR  AEMEN++ R
Sbjct: 16  EIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDGILRVKAEMENLRRR 75

Query: 185 TIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSNDTAGAVPLLKSLLEG 244
           T  + E + KFA++ F   LL V D+L RA        L++    +       + +++E 
Sbjct: 76  TELDIEKAHKFALEKFINELLPVIDSLDRA--------LEVADKANPD-----MSAMVED 122

Query: 245 VEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYE 304
           +E+T K + +V +KFGVE     N P DP+ H A+  +  +   PG V  +++ GYTL  
Sbjct: 123 IELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNG 182

Query: 305 RVIRPAEVGVTQA 317
           R IR A V V +A
Sbjct: 183 RTIRAAMVTVAKA 195
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Length = 213 Back     alignment and structure
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus} Length = 177 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
4ani_A213 Protein GRPE; chaperone cycle, complementary assay 100.0
1dkg_A197 Nucleotide exchange factor GRPE; HSP70, GRPE, nucl 100.0
3a6m_A177 Protein GRPE, HSP-70 cofactor; coiled-coil, four-h 100.0
3swy_A46 Cyclic nucleotide-gated cation channel alpha-3; co 86.77
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 85.23
3swf_A74 CGMP-gated cation channel alpha-1; coiled-coil, as 83.71
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus} Back     alignment and structure
Probab=100.00  E-value=5.9e-47  Score=346.53  Aligned_cols=152  Identities=36%  Similarity=0.568  Sum_probs=141.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhcccCCCCCC
Q 020200          151 KEREELLMAKNEEMKQMQDKVLRSFAEMENVKDRTIREAENSKKFAIQNFAKALLDVADNLGRASSVVKENFLKIDPSND  230 (329)
Q Consensus       151 ~e~ee~l~~~~~El~elkdk~lR~~AEfEN~RKRt~rE~e~ak~~A~e~f~kdLLpVlDnLERAl~~~~~~~~k~~~s~D  230 (329)
                      ..++..++.+++++++++|+|+|++|||+|||||++||++++++||+++|+++||||+|||+||+.+.+.          
T Consensus        62 ~~l~~~l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~----------  131 (213)
T 4ani_A           62 AAAKAQIAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKYRAQSLASDLLPVLDNFERALKIETD----------  131 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHSCCSC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhccc----------
Confidence            4455667778899999999999999999999999999999999999999999999999999999986432          


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHhCCCeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeee
Q 020200          231 TAGAVPLLKSLLEGVEMTEKQLGEVFKKFGVEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPA  310 (329)
Q Consensus       231 ~~~~~~~lk~l~eGVemt~kqL~~vL~k~GVe~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA  310 (329)
                          +..+++|++||+||+++|.++|+++||++|+++|++|||++|+||+++++++.++|||++|+|+||+|+|||||||
T Consensus       132 ----~~~~~~l~eGvemi~k~l~~~L~k~Gv~~I~~~Ge~FDP~~HeAv~~v~~~~~~~gtVv~V~qkGY~l~dRVLRpA  207 (213)
T 4ani_A          132 ----NEQAKSILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNTVVEELQKGYKLKDRVLRPA  207 (213)
T ss_dssp             ----CSTHHHHHHHHHHHHHHHHHHHHHTTEECCCCSSSCCCTTTEEEEEEECCSSSCSSSEEEEEECCCEETTSCCSCE
T ss_pred             ----cccHHHHHHHHHHHHHHHHHHHHHCCCEEeCCCCCCCCHHHceeeeeecCCCCCCCcEEEEEeCCeEECCEEeece
Confidence                1235789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeec
Q 020200          311 EVGVTQ  316 (329)
Q Consensus       311 ~VvVak  316 (329)
                      ||+|++
T Consensus       208 ~V~Va~  213 (213)
T 4ani_A          208 MVKVSQ  213 (213)
T ss_dssp             EEEEEC
T ss_pred             EEEeCC
Confidence            999985
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1 Back     alignment and structure
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus} Back     alignment and structure
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d1dkga159 b.73.1.1 (A:139-197) Head domain of nucleotide exc 2e-21
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]} Length = 59 Back     information, alignment and structure

class: All beta proteins
fold: Head domain of nucleotide exchange factor GrpE
superfamily: Head domain of nucleotide exchange factor GrpE
family: Head domain of nucleotide exchange factor GrpE
domain: Head domain of nucleotide exchange factor GrpE
species: Escherichia coli [TaxId: 562]

 Score = 83.9 bits (208), Expect = 2e-21
 Identities = 22/57 (38%), Positives = 30/57 (52%)

Query: 261 VEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQA 317
           VE     N P DP+ H A+  +  +   PG V  +++ GYTL  R IR A V V +A
Sbjct: 1   VEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKA 57

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d1dkga159 Head domain of nucleotide exchange factor GrpE {Es 99.88
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange factor GrpE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All beta proteins
fold: Head domain of nucleotide exchange factor GrpE
superfamily: Head domain of nucleotide exchange factor GrpE
family: Head domain of nucleotide exchange factor GrpE
domain: Head domain of nucleotide exchange factor GrpE
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=2.4e-23  Score=154.04  Aligned_cols=58  Identities=38%  Similarity=0.596  Sum_probs=56.2

Q ss_pred             CeeeCCCCCCCCccccceeeeccCCCCCCCceEEEeecceeeCCEEeeeeEEEeecCC
Q 020200          261 VEKFDPINEPFDPHRHNAMFQLPDNSKPPGTVAHVLKSGYTLYERVIRPAEVGVTQAV  318 (329)
Q Consensus       261 Ve~I~pvGepFDPn~HEAV~~v~s~d~~~gTVveVlqkGY~L~dRVLRPA~VvVak~~  318 (329)
                      |+.|+++|++|||++||||+++++++.++|+|++|+|+||+|+|||||||+|+|++++
T Consensus         1 ve~i~~~g~~FDP~~HeAv~~~~~~~~~~~~I~~v~~~GY~~~~rvlRpA~V~V~k~~   58 (59)
T d1dkga1           1 VEVIAETNVPLDPNVHQAIAMVESDDVAPGNVLGIMQKGYTLNGRTIRAAMVTVAKAK   58 (59)
T ss_dssp             EEEECCCSSBCCTTSEEEEEEEECSSSCTTBEEEEEECEEEETTEEEECEEEEEEECC
T ss_pred             CceeCCCCCCCCHHHceEeeEecCCCCCCCEEEEEEeCCcEECCEEeeccEEEEecCC
Confidence            5789999999999999999999999999999999999999999999999999999976