Citrus Sinensis ID: 020204

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSSENKNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESELHKIENRNGLTQSLDDV
cccccHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHccccEEcccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcHHHHHccccccccEEEEEEccccccccccHHHHHHHHHHHHHcccccccccEEEEccccccHHHHHHHcccccccccccEEEEccccHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccEEEEccccccccEEEEEEEccccccccccccccccccc
cccccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHcccccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHccccccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHccHHHHccEEEcccccHHHHcccccccccEHHccccccccccccccccccccccccccHHHHHHHHHccEEEcccccccccEEEccccccccccHHHHHHHHHHHHcccccccccccccc
MVTVSHEAVTQFQALMdqvdeplkitfqnihrgyptETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEidkilskpivptelyravrdsqligmsgysreslPVFAVGVGLSTFDKASVHCYVQSHIQineyrdrvilpsasakhgrpittCVKVLDMTGLKLSALSQIKLLTIIStvddlnypektntyyIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKImdfeslphfcrredsgssrssenkncfsldhpfHQQLYNYIKqqslisepiqpvkqgsfhvdlpepaaegtEIAKTIESELHKIEnrngltqslddv
MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPsasakhgrpiTTCVKVLDMTGLKLSALSQIKLLTIistvddlnypEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIqvlqgsgrdelLKIMDFESLPHFCRREDSGSSRSSENKNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESelhkienrngltqslddv
MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCrredsgssrsseNKNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESELHKIENRNGLTQSLDDV
********VTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFC***************CFSLDHPFHQQLYNYIKQQSLIS*************************************************
****SHEA*****************TFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSSENKN*FSLDHPFHQQLYNYI***********************EPAAEGTEIAKTIESELH***************
********VTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCR************KNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESELHKIENRNGLTQSLDDV
**TVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSSENKNCFSLDHPFHQQLYNYIKQQSLISEPIQ*V***SFHVD********TEIAKTIE*ELHK**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSSENKNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAAEGTEIAKTIESELHKIENRNGLTQSLDDV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
Q92503 715 SEC14-like protein 1 OS=H yes no 0.653 0.300 0.282 2e-17
Q75DK1308 SEC14 cytosolic factor OS yes no 0.574 0.613 0.298 2e-17
Q03606 719 CRAL-TRIO domain-containi yes no 0.647 0.296 0.285 5e-17
Q0V9N0 707 SEC14-like protein 5 OS=X no no 0.650 0.302 0.286 1e-16
P46250301 SEC14 cytosolic factor OS N/A no 0.589 0.644 0.309 2e-16
O43304 696 SEC14-like protein 5 OS=H no no 0.638 0.301 0.290 2e-16
P24280304 SEC14 cytosolic factor OS yes no 0.601 0.651 0.291 1e-15
Q8R0F9403 SEC14-like protein 4 OS=M no no 0.577 0.471 0.316 2e-15
Q9VMD6 659 Protein real-time OS=Dros yes no 0.629 0.314 0.274 2e-15
P53989302 SEC14 cytosolic factor OS no no 0.601 0.655 0.287 6e-15
>sp|Q92503|S14L1_HUMAN SEC14-like protein 1 OS=Homo sapiens GN=SEC14L1 PE=1 SV=2 Back     alignment and function desciption
 Score = 90.1 bits (222), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 113/237 (47%), Gaps = 22/237 (9%)

Query: 23  LKITFQNIHRGY--PTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPT 80
           L+   Q  H+G     E ++RFL+ARD N+ KA +++   L WR Q+++D IL     P 
Sbjct: 262 LRQWLQETHKGKIPKDEHILRFLRARDFNIDKAREIMCQSLTWRKQHQVDYILETWTPP- 320

Query: 81  ELYRAVRDSQLIGMSGYSRESLPVFAVGVG-------LSTFDKASVHCYVQSHIQINEYR 133
              + ++D    G   + ++  P++ + +G       +    + ++  YV S   INE  
Sbjct: 321 ---QVLQDYYAGGWHHHDKDGRPLYVLRLGQMDTKGLVRALGEEALLRYVLS---INEEG 374

Query: 134 DRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYY 191
            R    +     GRPI++   ++D+ GL +  L +  +K L  I  V + NYPE      
Sbjct: 375 LRRCEENTKV-FGRPISSWTCLVDLEGLNMRHLWRPGVKALLRIIEVVEANYPETLGRLL 433

Query: 192 IVNVPYIFSACWKVVKPLLQERTRKKIQVLQGS---GRDELLKIMDFESLPHFCRRE 245
           I+  P +F   W +V P + + TR+K  +  G+   G   LL  +D E +P F   E
Sbjct: 434 ILRAPRVFPVLWTLVSPFIDDNTRRKFLIYAGNDYQGPGGLLDYIDKEIIPDFLSGE 490

Homo sapiens (taxid: 9606)
>sp|Q75DK1|SEC14_ASHGO SEC14 cytosolic factor OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=SEC14 PE=3 SV=2 Back     alignment and function description
>sp|Q03606|YN02_CAEEL CRAL-TRIO domain-containing protein T23G5.2 OS=Caenorhabditis elegans GN=T23G5.2 PE=4 SV=3 Back     alignment and function description
>sp|Q0V9N0|S14L5_XENTR SEC14-like protein 5 OS=Xenopus tropicalis GN=sec14l1 PE=2 SV=1 Back     alignment and function description
>sp|P46250|SEC14_CANAL SEC14 cytosolic factor OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC14 PE=2 SV=1 Back     alignment and function description
>sp|O43304|S14L5_HUMAN SEC14-like protein 5 OS=Homo sapiens GN=SEC14L5 PE=2 SV=3 Back     alignment and function description
>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3 Back     alignment and function description
>sp|Q8R0F9|S14L4_MOUSE SEC14-like protein 4 OS=Mus musculus GN=Sec14l4 PE=2 SV=1 Back     alignment and function description
>sp|Q9VMD6|RETM_DROME Protein real-time OS=Drosophila melanogaster GN=retm PE=1 SV=2 Back     alignment and function description
>sp|P53989|SEC14_CANGA SEC14 cytosolic factor OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=SEC14 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
224086324345 predicted protein [Populus trichocarpa] 1.0 0.953 0.815 1e-163
255579158336 SEC14 cytosolic factor, putative [Ricinu 1.0 0.979 0.818 1e-160
224137200329 predicted protein [Populus trichocarpa] 0.975 0.975 0.786 1e-152
359494856338 PREDICTED: SEC14 cytosolic factor-like [ 0.993 0.967 0.793 1e-152
356555773329 PREDICTED: SEC14-like protein 1-like [Gl 0.975 0.975 0.780 1e-150
356532836329 PREDICTED: SEC14-like protein 1-like [Gl 0.975 0.975 0.780 1e-149
351722583324 polyphosphoinositide binding protein Ssh 0.978 0.993 0.774 1e-149
255644649324 unknown [Glycine max] gi|255644661|gb|AC 0.978 0.993 0.771 1e-149
255647651329 unknown [Glycine max] 0.975 0.975 0.774 1e-148
449529250336 PREDICTED: LOW QUALITY PROTEIN: CRAL-TRI 0.993 0.973 0.760 1e-147
>gi|224086324|ref|XP_002307849.1| predicted protein [Populus trichocarpa] gi|222853825|gb|EEE91372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  578 bits (1491), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 270/331 (81%), Positives = 301/331 (90%), Gaps = 2/331 (0%)

Query: 1   MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60
           M TVSH+A+ QF+ALMDQV+EPLK  +QN+H+GY  ETL RFLKAR+ N+ KAHKML+DC
Sbjct: 1   MGTVSHDAINQFKALMDQVEEPLKRAYQNVHQGYHAETLARFLKAREWNLIKAHKMLVDC 60

Query: 61  LHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVH 120
           LHWR QNEID IL+KPI+P +LYRAVRDSQLIGMSGYSRE LPVFA GVGLSTFDKASVH
Sbjct: 61  LHWRVQNEIDNILTKPIIPADLYRAVRDSQLIGMSGYSREGLPVFAHGVGLSTFDKASVH 120

Query: 121 CYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDD 180
            YVQSHIQINEYRDR++LP+AS K+GRPITTCVKVLDMTGLKLSAL+QIKL+TIIST+DD
Sbjct: 121 YYVQSHIQINEYRDRIVLPTASKKYGRPITTCVKVLDMTGLKLSALNQIKLMTIISTIDD 180

Query: 181 LNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPH 240
           +NYPEKTNTYYIVN PYIFSACWKVVKPLLQERTRKK+QVL G+GRDELLKIMD  SLPH
Sbjct: 181 MNYPEKTNTYYIVNAPYIFSACWKVVKPLLQERTRKKVQVLSGNGRDELLKIMDAASLPH 240

Query: 241 FCRREDSGSSRSSE--NKNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEP 298
           FC+RE SGSSR SE  N+NCFSLDHPFHQQLYNYIKQQSL+SEP QP+KQGS HVDLPEP
Sbjct: 241 FCKREGSGSSRHSEYANENCFSLDHPFHQQLYNYIKQQSLVSEPTQPIKQGSVHVDLPEP 300

Query: 299 AAEGTEIAKTIESELHKIENRNGLTQSLDDV 329
           AAEGTEI KTIESE+HK+EN NGL+ SLD +
Sbjct: 301 AAEGTEIVKTIESEMHKLENGNGLSGSLDGL 331

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255579158|ref|XP_002530426.1| SEC14 cytosolic factor, putative [Ricinus communis] gi|223530034|gb|EEF31957.1| SEC14 cytosolic factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224137200|ref|XP_002322498.1| predicted protein [Populus trichocarpa] gi|222867128|gb|EEF04259.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|359494856|ref|XP_002273868.2| PREDICTED: SEC14 cytosolic factor-like [Vitis vinifera] gi|296083523|emb|CBI23513.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356555773|ref|XP_003546204.1| PREDICTED: SEC14-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356532836|ref|XP_003534976.1| PREDICTED: SEC14-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|351722583|ref|NP_001237505.1| polyphosphoinositide binding protein Ssh1p [Glycine max] gi|2739044|gb|AAB94598.1| polyphosphoinositide binding protein Ssh1p [Glycine max] Back     alignment and taxonomy information
>gi|255644649|gb|ACU22827.1| unknown [Glycine max] gi|255644661|gb|ACU22833.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255647651|gb|ACU24288.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|449529250|ref|XP_004171614.1| PREDICTED: LOW QUALITY PROTEIN: CRAL-TRIO domain-containing protein T23G5.2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
TAIR|locus:2160892341 AT5G47730 "AT5G47730" [Arabido 0.996 0.961 0.743 8.1e-131
TAIR|locus:2012040325 AT1G55840 "AT1G55840" [Arabido 0.966 0.978 0.672 8.5e-120
UNIPROTKB|F1P060 719 SEC14L5 "Uncharacterized prote 0.644 0.294 0.331 2e-19
TAIR|locus:2049319 548 SFH3 "SEC14-like 3" [Arabidops 0.683 0.410 0.297 1.7e-17
TAIR|locus:2139564 554 COW1 "CAN OF WORMS1" [Arabidop 0.683 0.406 0.293 6.1e-17
TAIR|locus:2136303 554 SEC14 "SECRETION 14" [Arabidop 0.683 0.406 0.305 6.1e-17
TAIR|locus:2087293 579 AT3G24840 [Arabidopsis thalian 0.629 0.357 0.304 6.8e-17
RGD|1564638 696 Sec14l5 "SEC14-like 5 (S. cere 0.641 0.303 0.304 6.8e-17
UNIPROTKB|E1BWX8 681 SEC14L1 "Uncharacterized prote 0.650 0.314 0.295 1.4e-16
WB|WBGene00011962 719 T23G5.2 [Caenorhabditis elegan 0.696 0.318 0.286 1.6e-16
TAIR|locus:2160892 AT5G47730 "AT5G47730" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1283 (456.7 bits), Expect = 8.1e-131, P = 8.1e-131
 Identities = 244/328 (74%), Positives = 268/328 (81%)

Query:     1 MVTVSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDC 60
             M  VS EA+ +FQ LMDQV+EPLK T++ +H+GY  E L RFLKARD NV KAH ML++C
Sbjct:     1 MGIVSEEAIDEFQELMDQVEEPLKKTYERVHQGYLRENLGRFLKARDWNVCKAHTMLVEC 60

Query:    61 LHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDKASVH 120
             L WR  NEID ILSKPIVPTELYR VRDSQLIGMSGY++E LPVFA+GVGLSTFDKASVH
Sbjct:    61 LRWRVDNEIDSILSKPIVPTELYRDVRDSQLIGMSGYTKEGLPVFAIGVGLSTFDKASVH 120

Query:   121 CYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIKLLTIISTVDD 180
              YVQSHIQINEYRDRV+LPS S K+GRPITTCVKVLDMTGLKLSALSQIKL+TIIST+DD
Sbjct:   121 YYVQSHIQINEYRDRVLLPSISKKNGRPITTCVKVLDMTGLKLSALSQIKLVTIISTIDD 180

Query:   181 LNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPH 240
             LNYPEKTNTYY+VN PYIFSACWKVVKPLLQERTRKK+ VL G GRDELLKIMDF SLPH
Sbjct:   181 LNYPEKTNTYYVVNAPYIFSACWKVVKPLLQERTRKKVHVLSGCGRDELLKIMDFTSLPH 240

Query:   241 FCXXXXXXXXXXXXNKNCFSLDHPFHQQLYNYIKQQSLISEPIQPVKQGSFHVDLPEPAA 300
             FC            + NCFS++HPFHQQLYNY+K         +P KQGSFHV  PEP A
Sbjct:   241 FCRSGSSGSSHHTQSANCFSINHPFHQQLYNYVKHHYETQGQAEPAKQGSFHVGFPEPEA 300

Query:   301 EGTEIAKTIESELHKIENRNGLTQSLDD 328
             E   IAKTIESELHK ENRNGL  S+DD
Sbjct:   301 ERCVIAKTIESELHKFENRNGLAVSIDD 328
GO:0005215 "transporter activity" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0006810 "transport" evidence=ISS
GO:0009723 "response to ethylene stimulus" evidence=RCA
GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA
GO:0035556 "intracellular signal transduction" evidence=RCA
TAIR|locus:2012040 AT1G55840 "AT1G55840" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1P060 SEC14L5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
TAIR|locus:2049319 SFH3 "SEC14-like 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2139564 COW1 "CAN OF WORMS1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2136303 SEC14 "SECRETION 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087293 AT3G24840 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
RGD|1564638 Sec14l5 "SEC14-like 5 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWX8 SEC14L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
WB|WBGene00011962 T23G5.2 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VI0018
hypothetical protein (345 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
smart00516158 smart00516, SEC14, Domain in homologues of a S 2e-26
cd00170157 cd00170, SEC14, Sec14p-like lipid-binding domain 2e-22
pfam00650152 pfam00650, CRAL_TRIO, CRAL/TRIO domain 3e-15
pfam0376548 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal doma 1e-06
smart0110048 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal dom 1e-05
>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S Back     alignment and domain information 
 Score =  102 bits (256), Expect = 2e-26
 Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 7/156 (4%)

Query: 91  LIGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPIT 150
           + G  GY ++  PV     G       ++   ++  + + E   +        K    I 
Sbjct: 9   IPGGRGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQ------EEKKTGGIE 62

Query: 151 TCVKVLDMTGLKLSALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLL 210
               + D+ GL +S    + +L  I  +   +YPE+    YI+N P+ F   WK++KP L
Sbjct: 63  GFTVIFDLKGLSMSNPD-LSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPFL 121

Query: 211 QERTRKKIQVLQGSGRDELLKIMDFESLPHFCRRED 246
            E+TR+KI+ +    ++ELL+ +D E LP       
Sbjct: 122 DEKTREKIRFVGNDSKEELLEYIDKEQLPEELGGTL 157

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158
>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain Back     alignment and domain information
>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain Back     alignment and domain information
>gnl|CDD|217718 pfam03765, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information
>gnl|CDD|215024 smart01100, CRAL_TRIO_N, CRAL/TRIO, N-terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
KOG1471317 consensus Phosphatidylinositol transfer protein SE 100.0
KOG1470324 consensus Phosphatidylinositol transfer protein PD 100.0
PF00650159 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T 99.97
smart00516158 SEC14 Domain in homologues of a S. cerevisiae phos 99.96
cd00170157 SEC14 Sec14p-like lipid-binding domain. Found in s 99.92
PF13716149 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q 99.56
PF0376555 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr 99.03
KOG4406 467 consensus CDC42 Rho GTPase-activating protein [Sig 98.2
PF0284542 CUE: CUE domain; InterPro: IPR003892 This domain m 88.04
PF1455543 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 87.86
smart0054643 CUE Domain that may be involved in binding ubiquit 80.31
>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=7.2e-40  Score=304.34  Aligned_cols=213  Identities=33%  Similarity=0.483  Sum_probs=187.7

Q ss_pred             CCChHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCCchhhccCCCCcHHHHHHhhhcccccccccCCCCCcEEEEecCCc
Q 020204           33 GYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELYRAVRDSQLIGMSGYSRESLPVFAVGVGLS  112 (329)
Q Consensus        33 ~~~d~~llRFL~a~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~~~~~l~~~~~~~~~g~Dk~G~pV~~~~~~~~  112 (329)
                      ..+|.+|+||||||+||+++|.+||.+++.||+++++|+++.+....    ..+.++.+.+.+|.|++|+|+++.+.|..
T Consensus        42 ~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~----~~~~~~~~~~~~~~~~~g~~v~~~~~g~~  117 (317)
T KOG1471|consen   42 YDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEED----DELLKYYPQGLHGVDKEGRPVYIERLGKI  117 (317)
T ss_pred             CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccc----hhhhhhccccccccCCCCCEEEEeccCCC
Confidence            35688999999999999999999999999999999999998651111    22334677899999999999999999987


Q ss_pred             Ccc----hhhHHHHHHHHHHHHHHHHhhcchhhhhhcCCCcceEEEEEEcCCCcccccch--HHHHHHHHHhhhccCccc
Q 020204          113 TFD----KASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEK  186 (329)
Q Consensus       113 ~~~----~~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~~l~~~~~--~~~~~~i~~~~q~~YPe~  186 (329)
                      +..    .....+++++++..+|...+.+++.+.+..+++++|++.|+||+|++++++..  ...++.++.++|+||||+
T Consensus       118 ~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~  197 (317)
T KOG1471|consen  118 DPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPER  197 (317)
T ss_pred             CcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHh
Confidence            643    45678899999999999888888877776678999999999999999999854  478999999999999999


Q ss_pred             cceEEEEcCChhHHHHHHHhhhcccccccccEEEcCCCChhHHhccCCCCCCCccccCCCCCccccC
Q 020204          187 TNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHFCRREDSGSSRSS  253 (329)
Q Consensus       187 l~~i~iIN~P~~~~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~LP~~~gge~GG~~~~~  253 (329)
                      ++++||||+|++|+++|+++||||+++|++||+++++++.++|.++|++++||.+|    ||++.+.
T Consensus       198 l~~~~iIN~P~~f~~~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~LP~~y----GG~~~~~  260 (317)
T KOG1471|consen  198 LKRIHIINAPTIFSALWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVLPEEY----GGTCGDL  260 (317)
T ss_pred             hceEEEEcCchhHHHHHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhCcccc----CCCcccc
Confidence            99999999999999999999999999999999977778999999999999999999    7776653

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism] Back     alignment and domain information
>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>smart00516 SEC14 Domain in homologues of a S Back     alignment and domain information
>cd00170 SEC14 Sec14p-like lipid-binding domain Back     alignment and domain information
>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A Back     alignment and domain information
>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle Back     alignment and domain information
>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A Back     alignment and domain information
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
1aua_A296 Phosphatidylinositol Transfer Protein Sec14p From S 1e-16
3q8g_A320 Resurrection Of A Functional Phosphatidylinositol T 2e-15
3b74_A320 Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co 3e-15
1olm_A403 Supernatant Protein Factor In Complex With Rrr-Alph 2e-13
1olm_E403 Supernatant Protein Factor In Complex With Rrr-Alph 3e-13
1o6u_A403 The Crystal Structure Of Human Supernatant Protein 8e-12
1oip_A278 The Molecular Basis Of Vitamin E Retention: Structu 1e-05
1r5l_A262 Crystal Structure Of Human Alpha-tocopherol Transfe 3e-05
>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296 Back     alignment and structure 
Iteration: 1

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/209 (29%), Positives = 98/209 (46%), Gaps = 11/209 (5%)
Query: 38  TLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKIL------SKPIVPTELYRAVRDSQL 91
           TL+RFL+AR  +V  A +M  +C  WR     D IL       KP++     +    +  
Sbjct: 54  TLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDK 113
Query: 92  IGMSGYSRESLPVFAVGVGLSTFDKASVHCYVQSHIQINEYRDRVILPSASAKHGRPITT 151
            G   Y  E   V    +   T ++  +   V  +  + +YR    LP+ S   G  + T
Sbjct: 114 DGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYR----LPACSRAAGHLVET 169
Query: 152 CVKVLDMTGLKLS-ALSQIKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLL 210
              ++D+ G+ +S A S +  +   S +    YPE+   +YI+N P+ FS  +++ KP L
Sbjct: 170 SCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFL 229
Query: 211 QERTRKKIQVLQGSGRDELLKIMDFESLP 239
              T  KI +L  S + ELLK +  E+LP
Sbjct: 230 DPVTVSKIFILGSSYQKELLKQIPAENLP 258
>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320 Back     alignment and structure
>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320 Back     alignment and structure
>pdb|1OLM|A Chain A, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1OLM|E Chain E, Supernatant Protein Factor In Complex With Rrr-Alpha-Tocopherylquinone: A Link Between Oxidized Vitamin E And Cholesterol Biosynthesis Length = 403 Back     alignment and structure
>pdb|1O6U|A Chain A, The Crystal Structure Of Human Supernatant Protein Factor Length = 403 Back     alignment and structure
>pdb|1OIP|A Chain A, The Molecular Basis Of Vitamin E Retention: Structure Of Human Alpha-tocopherol Transfer Protein Length = 278 Back     alignment and structure
>pdb|1R5L|A Chain A, Crystal Structure Of Human Alpha-tocopherol Transfer Protein Bound To Its Ligand Length = 262 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 5e-65
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 4e-64
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 2e-60
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 6e-32
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 6e-29
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320 Back     alignment and structure
 Score =  206 bits (527), Expect = 5e-65
 Identities = 58/244 (23%), Positives = 109/244 (44%), Gaps = 18/244 (7%)

Query: 7   EAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQ 66
           EA+ QF++++ +         +N        TL+RFL+AR  +++ + +M ++   WR +
Sbjct: 41  EALLQFRSILLE---------KNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREE 91

Query: 67  NEIDKILSKPIVPTELYRAVRDSQL----IGMSGYSRESLPVFAVGVGLSTFDK----AS 118
              + I+       E     R               ++  P++   +G     K     +
Sbjct: 92  YGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITT 151

Query: 119 VHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGLKLSALSQIK-LLTIIST 177
               +++ ++  E      +P+ S + G  I T   VLD+ G+ LS    +   +  ++ 
Sbjct: 152 EKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVAD 211

Query: 178 VDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFES 237
           +    YPE+   +YI++ P+ FS  +K+VKP L   T  KI +L  S + ELLK +  E+
Sbjct: 212 ISQNYYPERMGKFYIIHSPFGFSTMFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIEN 271

Query: 238 LPHF 241
           LP  
Sbjct: 272 LPVK 275
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296 Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403 Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316 Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
1aua_A296 Phosphatidylinositol transfer protein SEC14P; phos 100.0
3q8g_A320 CRAL-TRIO domain-containing protein YKL091C; strin 100.0
1olm_A403 SEC14-like protein 2; lipid-binding protein, chole 100.0
1r5l_A262 Alpha-TTP, protein (alpha-tocopherol transfer prot 100.0
3hx3_A316 Retinaldehyde-binding protein 1; lipid transfer pr 100.0
3pg7_A256 Neurofibromin; SEC lipid binding domain, PH domain 99.27
3peg_A290 Neurofibromin; SEC14 domain, pleckstrin homology d 99.08
1wgl_A59 TOLL-interacting protein; CUE domain, structural g 90.62
1ify_A49 HHR23A, UV excision repair protein RAD23 homolog A 81.08
>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Back     alignment and structure
Probab=100.00  E-value=5.4e-48  Score=354.23  Aligned_cols=250  Identities=25%  Similarity=0.401  Sum_probs=213.4

Q ss_pred             chHHHHHHHHHHHhhcChHHHHHHhhhcCCCChHHHHHHhhhcCCCHHHHHHHHHHHHHHHHhCCchhhccCCCCcHHHH
Q 020204            4 VSHEAVTQFQALMDQVDEPLKITFQNIHRGYPTETLVRFLKARDGNVSKAHKMLMDCLHWRAQNEIDKILSKPIVPTELY   83 (329)
Q Consensus         4 ~~~~~i~~lr~ll~~~~~~l~~~~~~~~~~~~d~~llRFL~a~~~dv~kA~~~l~~~l~wR~~~~id~i~~~~~~~~~~~   83 (329)
                      ..+++|++||+++++..  +       +...+|.+|+||||||+||+++|.+||+++++||+++++++++.+.. +.+ .
T Consensus        29 ~q~~~l~~lr~~l~~~~--~-------~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~-~~~-~   97 (296)
T 1aua_A           29 AQEKALAELRKLLEDAG--F-------IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFH-YDE-K   97 (296)
T ss_dssp             THHHHHHHHHHHHHHTT--C-------CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCC-CTT-H
T ss_pred             HHHHHHHHHHHHHHhcC--C-------CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccc-cCc-H
Confidence            45789999999998753  1       23478999999999999999999999999999999999998875321 111 2


Q ss_pred             HHhhhcccccccccCCCCCcEEEEecCCcCcch----hhHHHHHHHHHHHHHHHHhhcchhhhhhcCCCcceEEEEEEcC
Q 020204           84 RAVRDSQLIGMSGYSRESLPVFAVGVGLSTFDK----ASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMT  159 (329)
Q Consensus        84 ~~l~~~~~~~~~g~Dk~G~pV~~~~~~~~~~~~----~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~  159 (329)
                      ..+++.++.+++|+|++||||+++++|.+++..    .+.+++++++++.+|...+..++.++...|.+++++++|+||+
T Consensus        98 ~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~  177 (296)
T 1aua_A           98 PLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLK  177 (296)
T ss_dssp             HHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred             HHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECC
Confidence            345666777899999999999999999987654    3678899999999998877666777777788899999999999


Q ss_pred             CCcccccch-HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHhhhcccccccccEEEcCCCChhHHhccCCCCCC
Q 020204          160 GLKLSALSQ-IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESL  238 (329)
Q Consensus       160 g~~l~~~~~-~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~L  238 (329)
                      |+++++++. +++++.++.++|++|||+++++||||+|++|+++|+++||||+++|++||+|+++++.++|.++||+++|
T Consensus       178 g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L  257 (296)
T 1aua_A          178 GISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL  257 (296)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhC
Confidence            999999875 4788999999999999999999999999999999999999999999999999987678999999999999


Q ss_pred             CccccCCCCCccccCC-CCCCCCCC-CcchHH
Q 020204          239 PHFCRREDSGSSRSSE-NKNCFSLD-HPFHQQ  268 (329)
Q Consensus       239 P~~~gge~GG~~~~~~-~~~c~~~~-~p~~~~  268 (329)
                      |++|    ||++++.+ .++|...+ .||.+.
T Consensus       258 P~~y----GG~~~~~~~~~g~~~~~~~~w~~~  285 (296)
T 1aua_A          258 PVKF----GGKSEVDESKGGLYLSDIGPWRDP  285 (296)
T ss_dssp             BGGG----TSCBCCCGGGCCSTTCCCSGGGCG
T ss_pred             cHHh----CCCCCCCCCCCCceeCCCCCCCCh
Confidence            9999    89988776 45676544 577653
>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Back     alignment and structure
>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Back     alignment and structure
>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Back     alignment and structure
>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Back     alignment and structure
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Back     alignment and structure
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4 Back     alignment and structure
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d1olma3199 c.13.1.1 (A:76-274) Supernatant protein factor (SP 8e-27
d1auaa2203 c.13.1.1 (A:97-299) C-terminal domain of phosphati 3e-24
d1r5la2185 c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot 1e-13
d1olma175 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), 8e-13
d1auaa193 a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl 2e-10
d1r5la166 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei 6e-06
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (255), Expect = 8e-27
 Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 7/155 (4%)

Query: 93  GMSGYSRESLPVFAVGVGLSTFDK----ASVHCYVQSHIQINEYRDRVILPSASAKHGRP 148
           GM GY  +  PV+   +G          AS    +++ ++  E   +      + K GR 
Sbjct: 12  GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQ-ECAHQTTKLGRK 70

Query: 149 ITTCVKVLDMTGLKLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVV 206
           + T   + D  GL L  L +  ++       + + NYPE     ++V  P +F   + ++
Sbjct: 71  VETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLI 130

Query: 207 KPLLQERTRKKIQVLQGSGRDELLKIMDFESLPHF 241
           KP L E TRKKI VL  + ++ LLK +  + +P  
Sbjct: 131 KPFLSEDTRKKIMVLGANWKEVLLKHISPDQVPVE 165
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185 Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75 Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d1olma3199 Supernatant protein factor (SPF), middle domain {H 100.0
d1auaa2203 C-terminal domain of phosphatidylinositol transfer 100.0
d1r5la2185 Alpha-tocopherol transfer protein {Human (Homo sap 99.97
d1olma175 Supernatant protein factor (SPF), N-terminal domai 99.54
d1auaa193 N-terminal domain of phosphatidylinositol transfer 99.43
d1r5la166 Alpha-tocopherol transfer protein {Human (Homo sap 99.31
d1wgla_59 Toll-interacting protein {Human (Homo sapiens) [Ta 86.43
d1xb2b156 Elongation factor Ts (EF-Ts), N-terminal domain {C 81.41
d2dnaa150 Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus 80.88
d2bwba144 DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta 80.75
>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.8e-37  Score=264.14  Aligned_cols=180  Identities=25%  Similarity=0.397  Sum_probs=159.0

Q ss_pred             hhhcccccccccCCCCCcEEEEecCCcCcch----hhHHHHHHHHHHHHHHHHhhcchhhhhhcCCCcceEEEEEEcCCC
Q 020204           86 VRDSQLIGMSGYSRESLPVFAVGVGLSTFDK----ASVHCYVQSHIQINEYRDRVILPSASAKHGRPITTCVKVLDMTGL  161 (329)
Q Consensus        86 l~~~~~~~~~g~Dk~G~pV~~~~~~~~~~~~----~~~~~~l~~~i~~~E~~~~~~l~~~~~~~~~~~~~~v~IiDl~g~  161 (329)
                      ++++++.+++|+|++||||+++++|++++..    .+.+++++++++.+|+..+.+ ..++.+.+++++++++|+||+|+
T Consensus         5 i~~~~p~~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~-~~~~~~~~~~v~~~~~I~Dl~g~   83 (199)
T d1olma3           5 IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQEC-AHQTTKLGRKVETITIIYDCEGL   83 (199)
T ss_dssp             HHHHCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCCCCEEEEEECTTC
T ss_pred             HHHHCCCccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHH-HHHHHhcCCccceEEEEEECCCC
Confidence            5678899999999999999999999988753    467889999999999987754 44556678899999999999999


Q ss_pred             cccccch--HHHHHHHHHhhhccCccccceEEEEcCChhHHHHHHHhhhcccccccccEEEcCCCChhHHhccCCCCCCC
Q 020204          162 KLSALSQ--IKLLTIISTVDDLNYPEKTNTYYIVNVPYIFSACWKVVKPLLQERTRKKIQVLQGSGRDELLKIMDFESLP  239 (329)
Q Consensus       162 ~l~~~~~--~~~~~~i~~~~q~~YPe~l~~i~iIN~P~~~~~~~~ivkpfL~~~t~~Ki~~~~~~~~~~L~k~i~~~~LP  239 (329)
                      ++++++.  +++++.++.++|++|||+++++||||+|++|+++|+++||||+++|++||+|+++++.++|.++|++++||
T Consensus        84 s~~~~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~fl~~~t~~KI~~~~~~~~~~L~~~i~~~~lP  163 (199)
T d1olma3          84 GLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQVP  163 (199)
T ss_dssp             CGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGSB
T ss_pred             chhhhccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHhcCHHhhccEEEeCCCCHHHHHHhCCHhhCC
Confidence            9999975  47899999999999999999999999999999999999999999999999999877789999999999999


Q ss_pred             ccccCCCCCccccCC-CCCCC---CCCCcchHHHH
Q 020204          240 HFCRREDSGSSRSSE-NKNCF---SLDHPFHQQLY  270 (329)
Q Consensus       240 ~~~gge~GG~~~~~~-~~~c~---~~~~p~~~~~y  270 (329)
                      ++|    ||+|++++ +++|.   ..+++.++++|
T Consensus       164 ~~y----GGt~~~~~~~~~~~~~~~~~~~~p~~~~  194 (199)
T d1olma3         164 VEY----GGTMTDPDGNPKCKSKINYGGDIPRKYY  194 (199)
T ss_dssp             GGG----TSSBCCTTCCTTCTTTCBCCCCCCGGGC
T ss_pred             HHh----CCCCCCCCCChhhhccCCCCCcCCHHHh
Confidence            999    99998876 66664   34567888765
>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Back     information, alignment and structure
>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure