Citrus Sinensis ID: 020206

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLWHHKEIYEVLTENMVSNYDFASYFI
Secondary Structure (PSIPRED)
ccEEEEEEEcccccHHHHHHHHHHHHHHccccccEEccccHHHHHcccHHHHHHHHHHHHHccccccccccccHHHHHHHHcccEEEEEEcccccHHHHHHHHccccccccccEEEEEcccHHHHHHccccEEEEcccccHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHccccccccccHHHHHHcccccccHHHHHHHHHHccccccccHHHHHccccEEEccccEEEccHHHHHHHHHHHHHccccccccccccccccHHHHHHccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHccccccccccEEEEEcccHHHHHHccccEEEEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHEEEEcccccHHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHcHHHHHHcEEEEEcccccEEHHHHHHHHccHHEEcccccccccccccccHHHHHHHHHHcccccEEEEEEEc
Coil and Loop (DISEMBL)
mdtcklgiwgiggvgkTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLndgnmnkfpniglnfqskrltrkKVLIVfddvnhprQIEFLIgnldwfasgsriLITARDKQALINCGVNKIYQIKELVHVDALKLLnqcafgrdhpdasYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISydglddkekNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVrqesindpskrsrlwHHKEIYEVLTENmvsnydfasyfi
Flexible Loop (DISEMBL)
mdtcklgiwgiggvgktAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLlndgnmnkfpniglnfqskrlTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAisklemvpqmeIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATsgievlvdkSLITISEYNKIRMHDLMRNMGREIVRQesindpskrsrlwHHKEIyevltenmvsnYDFASYFI
Low Complexity Region (SEG)
MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLWHHKEIYEVLTENMVSNYDFASYFI
Disordered region (IsUnstruct)
***CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIV************RLWHHKEIYEVLTENMVSNYDFASYF*
Disordered Region (DISOPRED)
MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLWHHKEIYEVLTENMVSNYDFASYFI
Disordered Region (DISEMBL)
MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLWHHKEIYEVLTENMVSNYDFASYFI
Disordered Region (DISPRO)
MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLWHHKEIYEVLTENMVSNYDFASYFI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLWHHKEIYEVLTENMVSNYDFASYFI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.930	0.267	0.413	3e-63
Q9FL92	1372	Probable WRKY transcripti	no	no	0.942	0.225	0.402	1e-56
O82500	1095	Putative disease resistan	no	no	0.939	0.282	0.369	1e-50
Q9FH83	1288	Probable WRKY transcripti	no	no	0.920	0.235	0.387	3e-50
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.933	0.190	0.369	3e-47
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.939	0.163	0.352	8e-47
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.902	0.228	0.351	1e-42
Q9FLB4	874	Putative disease resistan	no	no	0.832	0.313	0.272	4e-12
Q9XIF0	906	Putative disease resistan	no	no	0.820	0.298	0.257	9e-12
O64790	762	Probable disease resistan	no	no	0.841	0.363	0.265	2e-10

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  242 bits (618), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 132/319 (41%), Positives = 203/319 (63%), Gaps = 13/319 (4%)

Query: 6   LGIWGIGGVGKTAIAGAFFSKI------SRRFEGSYFAHNVREAEETGKLADLRKELLST 59
           +GIWG+GGVGKT IA A F  +      S +F+G+ F  +++E +    +  L+  LLS 
Sbjct: 212 MGIWGMGGVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENKRG--MHSLQNALLSE 269

Query: 60  LLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDV-NHPRQIEFLIGNLDWFASGSRILIT 118
           LL +         G +  + RL  KKVLIV DD+ N    +E+L G+LDWF +GSRI+IT
Sbjct: 270 LLREKANYNNEEDGKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIIT 329

Query: 119 ARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI 178
            RDK  +    +  IY++  L   ++++L  Q AFG++ P+ ++ +L+ E + YA+G+P+
Sbjct: 330 TRDKHLIEKNDI--IYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLPL 387

Query: 179 ALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVG 238
           ALK+ G  L   R   W++AI  ++      I + LKISYDGL+ K++ +FLDIACFL G
Sbjct: 388 ALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLRG 447

Query: 239 EDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDP 298
           E++D + + L +C   A  G+ +L+DKSL+ ISEYN+++MHDL+++MG+ IV  +   DP
Sbjct: 448 EEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQ--KDP 505

Query: 299 SKRSRLWHHKEIYEVLTEN 317
            +RSRLW  KE+ EV++ N
Sbjct: 506 GERSRLWLAKEVEEVMSNN 524

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score =  220 bits (561), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/318 (40%), Positives = 188/318 (59%), Gaps = 8/318 (2%)

Query: 1   MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREA-EETGKLADLRKELLST 59
           +D   +GIWG+ G+GKT +A A F ++S  F+   F  +  +A +E G    L ++ L  
Sbjct: 161 LDIRCVGIWGMPGIGKTTLAKAVFDQMSGEFDAHCFIEDYTKAIQEKGVYCLLEEQFLKE 220

Query: 60  LLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITA 119
             N G       + L     RL  K+VL+V DDV  P  +E  +G  DWF   S I+IT+
Sbjct: 221 --NAGASGTVTKLSL--LRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIITS 276

Query: 120 RDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA 179
           +DK     C VN+IY+++ L   +AL+L + CA   D  + +  E++ + IKYA G P+A
Sbjct: 277 KDKSVFRLCRVNQIYEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLA 336

Query: 180 LKILGRFLF-RKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVG 238
           L + GR L  +KR    E A  KL+  P     + +K SYD L+D+EKNIFLDIACF  G
Sbjct: 337 LNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQG 396

Query: 239 EDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDP 298
           E+ D V + L  C FF   GI+VLV+KSL+TISE N++RMH+L++++GR+I+ +E+    
Sbjct: 397 ENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISE-NRVRMHNLIQDVGRQIINRET-RQT 454

Query: 299 SKRSRLWHHKEIYEVLTE 316
            +RSRLW    I  +L +
Sbjct: 455 KRRSRLWEPCSIKYLLED 472

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score =  200 bits (508), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 118/319 (36%), Positives = 185/319 (57%), Gaps = 10/319 (3%)

Query: 6   LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLAD------LRKELLST 59
           +GIWG  GVGKT IA A +++    F  S F  NVRE+     L D      L++  LS 
Sbjct: 208 VGIWGPAGVGKTTIARALYNQYHENFNLSIFMENVRESYGEAGLDDYGLKLHLQQRFLSK 267

Query: 60  LLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITA 119
           LL+  ++ +  ++G     +RL  +KVLI+ DDV++  Q++ L     WF + SRI++T 
Sbjct: 268 LLDQKDL-RVRHLGA--IEERLKSQKVLIILDDVDNIEQLKALAKENQWFGNKSRIVVTT 324

Query: 120 RDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA 179
           ++KQ L++  +N +YQ+      +AL +  Q AF +  P      L  E    A  +P+A
Sbjct: 325 QNKQLLVSHDINHMYQVAYPSKQEALTIFCQHAFKQSSPSDDLKHLAIEFTTLAGHLPLA 384

Query: 180 LKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGE 239
           L++LG F+  K KE WE ++  L+     E+++VLK+ YDGL D EK++FL IAC   G+
Sbjct: 385 LRVLGSFMRGKGKEEWEFSLPTLKSRLDGEVEKVLKVGYDGLHDHEKDLFLHIACIFSGQ 444

Query: 240 DRDIVTKYLNA-CEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDP 298
             + + + + A  + + + G++VL DKSLI   E  +I MH L+R +G+E+VR++SI +P
Sbjct: 445 HENYLKQMIIANNDTYVSFGLQVLADKSLIQKFENGRIEMHSLLRQLGKEVVRKQSIYEP 504

Query: 299 SKRSRLWHHKEIYEVLTEN 317
            KR  L + KE   VL+ N
Sbjct: 505 GKRQFLMNAKETCGVLSNN 523

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score =  199 bits (505), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 122/315 (38%), Positives = 177/315 (56%), Gaps = 12/315 (3%)

Query: 6   LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNV-REAEETGKLADLRKELLSTLLNDG 64
           +GIWG+ G+GKT +A A F ++S  F+ S F  +  +   E G    L ++LL    ND 
Sbjct: 175 VGIWGMPGIGKTTLAKAVFDQMSSAFDASCFIEDYDKSIHEKGLYCLLEEQLLPG--NDA 232

Query: 65  NMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA 124
            + K  ++       RL  K+VL+V DDV +    E  +   DW   GS I+IT+RDKQ 
Sbjct: 233 TIMKLSSL-----RDRLNSKRVLVVLDDVRNALVGESFLEGFDWLGPGSLIIITSRDKQV 287

Query: 125 LINCGVNKIYQIKELVHVDALKL-LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 183
              CG+N+IY+++ L   +A +L L   +   D  + +  EL+   I YA G P+A+ + 
Sbjct: 288 FCLCGINQIYEVQGLNEKEARQLFLLSASIKEDMGEQNLQELSVRVINYANGNPLAISVY 347

Query: 184 GRFLFRKRK-EVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRD 242
           GR L  K+K    E A  KL+  P  +I +  K +YD L D EKNIFLDIACF  GE+ +
Sbjct: 348 GRELKGKKKLSEMETAFLKLKRRPPFKIVDAFKSTYDTLSDNEKNIFLDIACFFQGENVN 407

Query: 243 IVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRS 302
            V + L  C FF    I+VLVDK L+TISE N++ +H L +++GREI+  E++    +R 
Sbjct: 408 YVIQLLEGCGFFPHVEIDVLVDKCLVTISE-NRVWLHKLTQDIGREIINGETVQI-ERRR 465

Query: 303 RLWHHKEIYEVLTEN 317
           RLW    I  +L  N
Sbjct: 466 RLWEPWSIKYLLEYN 480

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score =  189 bits (479), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/314 (36%), Positives = 175/314 (55%), Gaps = 7/314 (2%)

Query: 2   DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL 61
           D   +GIWG+ G+GKT +A A F+ +S  ++ S F  N  EA     L  L KE +  +L
Sbjct: 188 DIRSIGIWGMPGIGKTTLAKAVFNHMSTDYDASCFIENFDEAFHKEGLHRLLKERIGKIL 247

Query: 62  NDG-NMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITAR 120
            D  ++     +       +L  K++L+V DDV      E  +  LDWF SGS I+IT+ 
Sbjct: 248 KDEFDIESSYIMRPTLHRDKLYDKRILVVLDDVRDSLAAESFLKRLDWFGSGSLIIITSV 307

Query: 121 DKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 180
           DKQ    C +N+IY ++ L   +AL+L +Q  FG + P+ +  +L+ + I Y  G P+AL
Sbjct: 308 DKQVFAFCQINQIYTVQGLNVHEALQLFSQSVFGINEPEQNDRKLSMKVIDYVNGNPLAL 367

Query: 181 KILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGED 240
            I GR L  K+ E+ E A  +L+  P ++IQ+VLK +Y  L D EKNI LDIA F  GE 
Sbjct: 368 SIYGRELMGKKSEM-ETAFFELKHCPPLKIQDVLKNAYSALSDNEKNIVLDIAFFFKGET 426

Query: 241 RDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSK 300
            + V + L    +F    I+VLVDK ++TISE N ++M++L+++  +EI   E       
Sbjct: 427 VNYVMQLLEESHYFPRLAIDVLVDKCVLTISE-NTVQMNNLIQDTCQEIFNGEI----ET 481

Query: 301 RSRLWHHKEIYEVL 314
            +R+W    I  +L
Sbjct: 482 CTRMWEPSRIRYLL 495

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  187 bits (476), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 111/315 (35%), Positives = 175/315 (55%), Gaps = 6/315 (1%)

Query: 1    MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTL 60
            +D   +GIWG  G+GKT IA   F KIS ++E      ++ +  E      +R+  LS +
Sbjct: 835  LDVRSIGIWGTVGIGKTTIAEEIFRKISVQYETCVVLKDLHKEVEVKGHDAVRENFLSEV 894

Query: 61   LN-DGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITA 119
            L  + ++ +  +I  +F   RL RK++L++ DDVN  R ++  +G L++F  GSRI++T+
Sbjct: 895  LEVEPHVIRISDIKTSFLRSRLQRKRILVILDDVNDYRDVDTFLGTLNYFGPGSRIIMTS 954

Query: 120  RDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA 179
            R+++  + C ++ +Y++K L    +L LL++           Y  L+ E +K++ G P  
Sbjct: 955  RNRRVFVLCKIDHVYEVKPLDIPKSLLLLDRGTCQIVLSPEVYKTLSLELVKFSNGNPQV 1014

Query: 180  LKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGE 239
            L+    FL    +E W     +++    + I  + + S  GLDD E+ IFLDIACF    
Sbjct: 1015 LQ----FLSSIDRE-WNKLSQEVKTTSPIYIPGIFEKSCCGLDDNERGIFLDIACFFNRI 1069

Query: 240  DRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPS 299
            D+D V   L+ C F A  G   LVDKSL+TIS++N + M   ++  GREIVRQES + P 
Sbjct: 1070 DKDNVAMLLDGCGFSAHVGFRGLVDKSLLTISQHNLVDMLSFIQATGREIVRQESADRPG 1129

Query: 300  KRSRLWHHKEIYEVL 314
             RSRLW+   I  V 
Sbjct: 1130 DRSRLWNADYIRHVF 1144

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  174 bits (440), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 178/319 (55%), Gaps = 22/319 (6%)

Query: 6   LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA--HNVREAEETGKLADLRKELLSTLLND 63
           +GIWG  G+GK+ I  A +SK+S +F    F    +   ++ +G      KELLS +L  
Sbjct: 208 VGIWGQSGIGKSTIGRALYSKLSIQFHHRAFITYKSTSGSDVSGMKLRWEKELLSEILGQ 267

Query: 64  GNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQ 123
            ++ K  + G+  Q  RL ++KVLI+ DDV+    ++ L+G  +WF SGSRI++  +D+Q
Sbjct: 268 KDI-KIEHFGVVEQ--RLKQQKVLILLDDVDSLEFLKTLVGKAEWFGSGSRIIVITQDRQ 324

Query: 124 ALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 183
            L    ++ IY+++      AL +L + AFG+D P   + EL  E  K A  +P+ L +L
Sbjct: 325 LLKAHEIDLIYEVEFPSEHLALTMLCRSAFGKDSPPDDFKELAFEVAKLAGNLPLGLSVL 384

Query: 184 GRFLFRKRKEVWENAISKLEMVPQM------EIQEVLKISYDGLDDKEKNIFLDIACFLV 237
           G  L  + KE W      +EM+P++      +I + L++SYD L  K++++FL IAC   
Sbjct: 385 GSSLKGRTKEWW------MEMMPRLRNGLNGDIMKTLRVSYDRLHQKDQDMFLYIACLFN 438

Query: 238 GEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESIND 297
           G +   V   L         G  +L +KSLI I+    I MH+L+  +GREI R +S  +
Sbjct: 439 GFEVSYVKDLLK-----DNVGFTMLTEKSLIRITPDGYIEMHNLLEKLGREIDRAKSKGN 493

Query: 298 PSKRSRLWHHKEIYEVLTE 316
           P KR  L + ++I+EV+TE
Sbjct: 494 PGKRRFLTNFEDIHEVVTE 512

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLB4|DRL31_ARATH Putative disease resistance protein At5g05400 OS=Arabidopsis thaliana GN=At5g05400 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/301 (27%), Positives = 135/301 (44%), Gaps = 27/301 (8%)

Query: 6   LGIWGIGGVGKTAIAGAF---FSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN 62
           LGI+G+GGVGKT +       F  +S  F+ + +    +         D+ K L   L N
Sbjct: 178 LGIYGMGGVGKTTLLSQINNKFRTVSNDFDIAIWVVVSKNPTVKRIQEDIGKRL--DLYN 235

Query: 63  DGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK 122
           +G   K  N   +   + L  KK +++ DD+     +   IG      +GS+I  T+R  
Sbjct: 236 EGWEQKTENEIASTIKRSLENKKYMLLLDDMWTKVDLAN-IGIPVPKRNGSKIAFTSRSN 294

Query: 123 QALINCGVNKIYQIKELVHVDALKLL--NQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 180
           +     GV+K  ++  L+  DA  L   N       HP     E+     +   G+P+AL
Sbjct: 295 EVCGKMGVDKEIEVTCLMWDDAWDLFTRNMKETLESHPKIP--EVAKSIARKCNGLPLAL 352

Query: 181 KILGRFLFRKRK-EVWENAISKLEMVPQMEIQEVLKISYDGLD-DKEKNIFLDIACFL-- 236
            ++G  + RK+  E W +A+     + + +I  +LK SYD L  +K K+ FL  A F   
Sbjct: 353 NVIGETMARKKSIEEWHDAVGVFSGI-EADILSILKFSYDDLKCEKTKSCFLFSALFPED 411

Query: 237 --VGEDRDIVTKYLNACEFFATSGIE--------VLVDKSLITISEYN-KIRMHDLMRNM 285
             +G+D D++  ++       + GI          L    L+  SE   K++MHD++R M
Sbjct: 412 YEIGKD-DLIEYWVGQGIILGSKGINYKGYTIIGTLTRAYLLKESETKEKVKMHDVVREM 470

Query: 286 G 286
            
Sbjct: 471 A 471

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIF0|DRL13_ARATH Putative disease resistance protein At1g59780 OS=Arabidopsis thaliana GN=At1g59780 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 157/357 (43%), Gaps = 87/357 (24%)

Query: 6   LGIWGIGGVGKTAIAGAFFS--KISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLND 63
           + I G+GG+GKT +A   F   K+   F+G  +    +E          RK++  T+L  
Sbjct: 183 VSITGLGGLGKTTLARQIFDHDKVKSHFDGLAWVCVSQEFT--------RKDVWKTIL-- 232

Query: 64  GNMN-KFPNIGL---NFQSKR---LTRKKVLIVFDDVNHPRQIEFLIGNLDWF------- 109
           GN++ K+ +  L   + Q K    L  KK LIVFDD         L    DW+       
Sbjct: 233 GNLSPKYKDSDLPEDDIQKKLFQLLETKKALIVFDD---------LWKREDWYRIAPMFP 283

Query: 110 --ASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYI---- 163
              +G ++L+T+R+     +C     ++ + L H +  KLL + AF +      YI    
Sbjct: 284 ERKAGWKVLLTSRNDAIHPHCVT---FKPELLTHDECWKLLQRIAFSKQKTITGYIIDKE 340

Query: 164 --ELTHEAIKYAQGVPIALKILGRFL-----FRKRKEVWENAISKLEMV-------PQME 209
             ++  E  K+ + +P+A+K+LG  L      R+ K + EN IS + +            
Sbjct: 341 MVKMAKEMTKHCKRLPLAVKLLGGLLDAKHTLRQWKLISENIISHIVVGGTSSNENDSSS 400

Query: 210 IQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTK---YLNACEFFATSG-------- 258
           +  VL +S++GL    K+  L +A +   ED +I  +   Y+ A E     G        
Sbjct: 401 VNHVLSLSFEGLPGYLKHCLLYLASY--PEDHEIEIERLSYVWAAEGITYPGNYEGATIR 458

Query: 259 ------IEVLVDKSLIT------ISEYNKIRMHDLMRNMGREIVRQES----INDPS 299
                 IE LV ++++        S + K ++HDLMR +     ++E+    + DP+
Sbjct: 459 DVADLYIEELVKRNMVISERDALTSRFEKCQLHDLMREICLLKAKEENFLQIVTDPT 515

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|O64790|DRL17_ARATH Probable disease resistance protein At1g61300 OS=Arabidopsis thaliana GN=At1g61300 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/309 (26%), Positives = 137/309 (44%), Gaps = 32/309 (10%)

Query: 6   LGIWGIGGVGKTAIAGAF---FSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN 62
           +G+ G+GGVGKT +       F+K+S RF+   +    + A+ +    D+ ++L   L +
Sbjct: 64  MGLHGMGGVGKTTLFKKIHNKFAKMSSRFDIVIWIVVSKGAKLSKLQEDIAEKL--HLCD 121

Query: 63  DGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK 122
           D   NK  +       + L  K+ +++ DD+     +E +        +  ++  T RD+
Sbjct: 122 DLWKNKNESDKATDIHRVLKGKRFVLMLDDIWEKVDLEAIGVPYPSEVNKCKVAFTTRDQ 181

Query: 123 QALINCGVNKIYQIKELVHVDALKLL-NQCAFGRDHPDASYIELTHEAIKYAQGVPIALK 181
           +     G +K  Q+K L   DA +L  N+        D   +EL  E  +  +G+P+AL 
Sbjct: 182 KVCGEMGDHKPMQVKCLEPEDAWELFKNKVGDNTLRSDPVIVELAREVAQKCRGLPLALS 241

Query: 182 ILGRFLFRKRK-EVWENAISKLEMVPQM------EIQEVLKISYDGLDDKE-KNIFLDIA 233
           ++G  +  K   + WE+AI  L            +I  +LK SYD L D+  K+ FL   
Sbjct: 242 VIGETMASKTMVQEWEHAIDVLTRSAAEFSNMGNKILPILKYSYDSLGDEHIKSCFL--Y 299

Query: 234 CFLVGEDRDIVTKYL---NACEFFA----------TSGIEV---LVDKSLITISEYNKIR 277
           C L  ED +I  + L     CE F             G E+   L   +L+T      + 
Sbjct: 300 CALFPEDDEIYNEKLIDYWICEGFIGEDQVIKRARNKGYEMLGTLTLANLLTKVGTEHVV 359

Query: 278 MHDLMRNMG 286
           MHD++R M 
Sbjct: 360 MHDVVREMA 368

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
359486075	1291	PREDICTED: TMV resistance protein N-like	0.939	0.239	0.498	8e-81
359495270	1154	PREDICTED: TMV resistance protein N-like	0.960	0.273	0.492	9e-81
255537139	1137	leucine-rich repeat-containing protein,	0.942	0.272	0.515	4e-80
359486073	1296	PREDICTED: TMV resistance protein N-like	0.951	0.241	0.498	5e-80
359486071	1261	PREDICTED: TMV resistance protein N-like	0.951	0.248	0.501	9e-80
147768286	1206	hypothetical protein VITISV_033530 [Viti	0.948	0.258	0.481	1e-78
359495289	1133	PREDICTED: TMV resistance protein N-like	0.948	0.275	0.474	3e-78
225460354	1174	PREDICTED: TMV resistance protein N-like	0.948	0.265	0.481	3e-78
359493496	1180	PREDICTED: TMV resistance protein N-like	0.930	0.259	0.512	8e-78
359496034	1132	PREDICTED: TMV resistance protein N-like	0.951	0.276	0.477	4e-77

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  306 bits (784), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 156/313 (49%), Positives = 216/313 (69%), Gaps = 4/313 (1%)

Query: 6   LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGN 65
           +GIWG+ G+GKT IA A + KI  +FEG  F  NVRE  +    A ++ ELLS +  +GN
Sbjct: 219 VGIWGMAGIGKTTIAEAVYQKICTQFEGCCFLSNVREKSQKNDPAVIQMELLSQVFWEGN 278

Query: 66  MN-KFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA 124
           +N +  N G+N   K L   +VLIV DDV+ P+Q+E L GN +WF  GSRI+IT R+K  
Sbjct: 279 LNTRIFNRGINAIKKTLHSMRVLIVLDDVDRPQQLEVLAGNHNWFGPGSRIIITTREKH- 337

Query: 125 LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 184
           L++  V +IY++KEL   +A +L  Q AF    P   +++L   A+ Y +G+P+ALKILG
Sbjct: 338 LLDEKV-EIYEVKELNKDEARRLFYQHAFKYKPPAGDFVQLCDRALNYTKGIPLALKILG 396

Query: 185 RFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIV 244
           RFL+ + K+ WE+ + KL  +P  EIQ+VL+IS+DGLDD +K+IF DIACF  G+D+D V
Sbjct: 397 RFLYNRSKKEWESELEKLRRIPNKEIQDVLRISFDGLDDNQKDIFFDIACFFKGQDKDYV 456

Query: 245 TKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRL 304
            K L +C+FF   GI  L+DKSL+TIS YNK+ MHDL++ MG EIVRQES+ DP KRSRL
Sbjct: 457 IKLLKSCDFFPEIGIRNLIDKSLVTIS-YNKLCMHDLIQEMGWEIVRQESMKDPGKRSRL 515

Query: 305 WHHKEIYEVLTEN 317
           W + ++ ++LT N
Sbjct: 516 WVNDDVIDMLTTN 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495270|ref|XP_002276075.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  306 bits (784), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 157/319 (49%), Positives = 211/319 (66%), Gaps = 3/319 (0%)

Query: 2   DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL 61
           D   +GIWG+GG+GKT +A A + KI+ +FE   F  NV E      L  L+++ L+ LL
Sbjct: 209 DFLMVGIWGMGGIGKTTLARAIYRKITCQFEACCFFENVGEDLAKEGLIGLQQKFLAQLL 268

Query: 62  NDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARD 121
            + N+N      L     RL  KKVLIV D+VN P  ++ L+GN DWF  GSRI+IT RD
Sbjct: 269 EEPNLNM---KALTSIKGRLHSKKVLIVLDNVNDPIILKCLVGNYDWFGRGSRIIITTRD 325

Query: 122 KQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALK 181
           K+ LI+ GV   Y+ +   + +A + L   +     P   ++E++ E I YAQG+P+AL+
Sbjct: 326 KRLLISHGVLNYYEAQRFNYDEASEFLTPYSLKHKIPCDDFMEVSKEVIGYAQGLPLALE 385

Query: 182 ILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDR 241
           +LG FLF   KE W N + KL+  P M+IQEVLK+SYDGLDDKEKNI LDIACF  GED+
Sbjct: 386 VLGSFLFSMTKEEWRNQLDKLKSTPNMKIQEVLKVSYDGLDDKEKNILLDIACFFKGEDK 445

Query: 242 DIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKR 301
           D V + L+ C FF+ SGI  L+DKSL+TIS  N+I MHDL++ MGREIVRQ+S+ +P KR
Sbjct: 446 DYVMEILDGCGFFSLSGIRALIDKSLVTISWSNEIMMHDLIQEMGREIVRQQSLEEPGKR 505

Query: 302 SRLWHHKEIYEVLTENMVS 320
           SRLW H++I  VL +N  +
Sbjct: 506 SRLWFHEDINGVLKKNTAT 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537139|ref|XP_002509636.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223549535|gb|EEF51023.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  304 bits (778), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 163/316 (51%), Positives = 216/316 (68%), Gaps = 6/316 (1%)

Query: 6   LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVR-EAEETGKLADLRKELLSTLLNDG 64
           LGIWG+GG+GKT +A A F +I+ +FEGS F  NVR   E+ G LA L++ELLS  L   
Sbjct: 208 LGIWGMGGIGKTTLAEAVFYQIAYQFEGSCFLANVRGNFEKNGGLARLQEELLSKTLEKR 267

Query: 65  NMN-KFPNIGLNFQSKR-LTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK 122
           +     PNIG +F  K+ L  ++VLIV DD N   Q++ L+G+ DWF  GSRI++T+RDK
Sbjct: 268 DFKIDTPNIGYSFWVKQMLKHRRVLIVVDDANDSEQLDLLVGSHDWFGPGSRIIVTSRDK 327

Query: 123 QALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKI 182
           Q L    V+ IY++KELVH +AL+L NQ  F +      Y  L+   I+YA+GVP+ALK+
Sbjct: 328 QVLTKI-VDDIYEVKELVHHEALQLFNQTTFKKKCVPEDYSYLSDLVIEYAKGVPLALKV 386

Query: 183 LGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRD 242
           LG FLF K K  WE+A+ KL+  P    Q VLKISYDGLD +EKNIFLDIACF  GE  +
Sbjct: 387 LGSFLFGKSKTEWESALDKLKKAPHRATQNVLKISYDGLDAEEKNIFLDIACFFRGESVE 446

Query: 243 IVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRS 302
           +VTK L+ C F    G+ +LVDKSLITI   +K+ MHDL++ MG+EIV QES   PS+R+
Sbjct: 447 MVTKILDGCGFSTKIGLCLLVDKSLITILN-DKVEMHDLLQEMGKEIVLQES-KQPSQRT 504

Query: 303 RLWHHKEIYEVLTENM 318
           RLW+H++I  V + N+
Sbjct: 505 RLWNHEDILHVFSRNL 520

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  304 bits (778), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 158/317 (49%), Positives = 215/317 (67%), Gaps = 4/317 (1%)

Query: 2   DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL 61
           D   +GIWG+ G+GKT IA A + KI  +FEG  F  NVRE  +    A ++ +LLS + 
Sbjct: 220 DVRMVGIWGMAGIGKTTIAEAVYQKIRTQFEGCCFLSNVREKSQNNDPAVIQMKLLSQIF 279

Query: 62  NDGNMNK-FPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITAR 120
             GN+N    + G+N   K L   +VLIV DDV+ P+Q+E L GN +WF  GSRI+IT R
Sbjct: 280 EKGNLNTGLLSGGINVIEKTLHSMRVLIVLDDVDCPQQLEVLAGNHNWFGPGSRIIITTR 339

Query: 121 DKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 180
           +K  L++  V +IY +KEL   +A KL  Q AF    P   +++L   A+ Y +G+P+AL
Sbjct: 340 EKH-LLDEKV-EIYIVKELNKDEARKLFYQHAFKYKPPAGDFVQLCDRALNYTKGIPLAL 397

Query: 181 KILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGED 240
           KILGRFL+ + K+ WE+ + KL  +P  EIQ+VL+IS+DGLDD +K+IFLDIACF  G+D
Sbjct: 398 KILGRFLYNRSKKEWESELEKLRRIPNNEIQDVLRISFDGLDDNQKDIFLDIACFFKGQD 457

Query: 241 RDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSK 300
           +D V K L +C+FF   GI  L+DKSL+TIS YNK+ MHDL++ MG EIVRQESI DP K
Sbjct: 458 KDYVIKLLKSCDFFPEIGIRNLIDKSLVTIS-YNKLCMHDLIQKMGWEIVRQESIKDPGK 516

Query: 301 RSRLWHHKEIYEVLTEN 317
           RSRLW + ++ ++LT N
Sbjct: 517 RSRLWVNDDVIDMLTTN 533

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486071|ref|XP_002272667.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  303 bits (775), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 159/317 (50%), Positives = 215/317 (67%), Gaps = 4/317 (1%)

Query: 2   DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL 61
           D   +GIWG+ G+GKT IA A + KI  RFEG  F  NVRE  +    A ++ ELLS + 
Sbjct: 215 DVRMVGIWGMAGIGKTTIAEAVYQKIRTRFEGCCFLSNVREKSQKNDPAVIQMELLSQIF 274

Query: 62  NDGNMNK-FPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITAR 120
            +GN+N    + G+N   K L   +VLIV DDV+ P+Q+E L GN +WF+ GSRI+IT R
Sbjct: 275 EEGNLNTGVLSGGINVIEKTLHSMRVLIVLDDVDCPQQLEVLAGNHNWFSPGSRIIITTR 334

Query: 121 DKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 180
           +K  L++  V +IY  KEL   +A KL  Q AF    P   +++L   A+ Y +G+P+AL
Sbjct: 335 EKH-LLDEKV-EIYVAKELNKDEARKLFYQHAFKYKPPVGDFVQLCDRALNYTKGIPLAL 392

Query: 181 KILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGED 240
           KILGRFL+ + K+ WE+ + KL  +P  EIQ+VL+IS+DGLDD +K+IFLDIACF  G+D
Sbjct: 393 KILGRFLYNRSKKEWESELEKLRRIPNKEIQDVLRISFDGLDDNQKDIFLDIACFFKGQD 452

Query: 241 RDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSK 300
           +D V K L +C+FF    I  L+DKSL+TIS YNK+ MHDL++ MG EIVRQESI DP K
Sbjct: 453 KDYVIKLLKSCDFFPEIEIRNLIDKSLVTIS-YNKLCMHDLIQEMGWEIVRQESIKDPGK 511

Query: 301 RSRLWHHKEIYEVLTEN 317
           RSRLW + ++ ++LT N
Sbjct: 512 RSRLWVNDDVIDMLTTN 528

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147768286|emb|CAN64759.1| hypothetical protein VITISV_033530 [Vitis vinifera]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 155/322 (48%), Positives = 217/322 (67%), Gaps = 10/322 (3%)

Query: 1   MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAHNVREAEETGKLADLRKELLST 59
           +D   +GIWG+ G+GK+ IA   ++KI  +F EG  F  NVRE  +   LA L++ELLS 
Sbjct: 216 VDVRMVGIWGMAGIGKSTIAYQVYNKIYAQFDEGYCFLPNVREESQRHGLAYLQEELLSQ 275

Query: 60  L----LNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRI 115
           +    LN GN N+    G+NF  +RL  +KVLIV DDV+   Q+E L GN DWF +GSRI
Sbjct: 276 ISGGNLNKGNFNR----GINFIKERLHSRKVLIVLDDVDMYEQLEVLAGNHDWFGAGSRI 331

Query: 116 LITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG 175
           +IT +DK  L   GV+ IY ++ L + +ALKL   CAF  D P A Y++L    +KY +G
Sbjct: 332 IITTKDKTLLNMHGVDAIYNVEGLKYNEALKLFCWCAFKHDLPTADYMQLCKNFVKYIEG 391

Query: 176 VPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACF 235
           +P+A+K+LG F+  K  + W++A+ KL+ +P  ++Q+VL+IS+DGLDD +K+IFLDIACF
Sbjct: 392 LPLAIKVLGSFVKNKTIDEWKSALDKLKRIPHKDVQKVLRISFDGLDDNQKDIFLDIACF 451

Query: 236 LVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESI 295
             G+D+D V K L +C+FF  + I VL + SLI +S  NK+ MHBL++ MG EIVRQE++
Sbjct: 452 FKGQDKDFVAKILESCDFFPANDIRVLEENSLILVSN-NKLCMHBLLQEMGWEIVRQENV 510

Query: 296 NDPSKRSRLWHHKEIYEVLTEN 317
             P KRSRLW H E+  VLT N
Sbjct: 511 KYPGKRSRLWFHDEVNHVLTTN 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495289|ref|XP_002276927.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 150/316 (47%), Positives = 215/316 (68%), Gaps = 4/316 (1%)

Query: 1   MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTL 60
           +D   +GIWG+GG+GKT +A A +++IS +FE   F  NV +  E      L+K+ LS L
Sbjct: 240 LDVRMVGIWGMGGIGKTTLARAVYNQISHQFEACCFLENVSDYLEKQDFLSLQKKYLSQL 299

Query: 61  LNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITAR 120
           L D N+N    I +      L  KKVLIV DDVN+ + +E LIG   WF  GSRI+IT R
Sbjct: 300 LEDENLNTKGCISIK---ALLCSKKVLIVIDDVNNSKILEDLIGKHGWFGIGSRIIITTR 356

Query: 121 DKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL 180
           +KQ L+  GVN++YQ ++L   +A++L ++ AF + HP   Y+EL+   + YAQG+P+AL
Sbjct: 357 NKQLLVTHGVNEVYQAEKLNDDNAVELFSRYAFKKAHPIDDYVELSQCIVVYAQGLPLAL 416

Query: 181 KILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGED 240
           ++LG FLF K K  WE+ + KL+ +P+ EIQ+VL++S+DGL+D E++IFLDIACF  G D
Sbjct: 417 RVLGSFLFDKSKRQWESQLDKLKKIPKKEIQDVLRVSFDGLEDNERDIFLDIACFFQGHD 476

Query: 241 RDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSK 300
           +D V +   +C FF   GI VL++KSLI++ E NK+ MH+L++ MGREIVR+ S  +P K
Sbjct: 477 KDYVMEIFRSCGFFPDIGIRVLIEKSLISVVE-NKLMMHNLLQKMGREIVREASPKEPGK 535

Query: 301 RSRLWHHKEIYEVLTE 316
           RSRLW H ++  VLT+
Sbjct: 536 RSRLWIHDDVNHVLTK 551

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  298 bits (762), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 155/322 (48%), Positives = 217/322 (67%), Gaps = 10/322 (3%)

Query: 1   MDTCKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAHNVREAEETGKLADLRKELLST 59
           +D   +GIWG+ G+GK+ IA   ++KI  +F EG  F  NVRE  +   LA L++ELLS 
Sbjct: 216 VDVRMVGIWGMAGIGKSTIAYQVYNKIYAQFDEGYCFLPNVREESQRHGLAYLQEELLSQ 275

Query: 60  L----LNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRI 115
           +    LN GN N+    G+NF  +RL  +KVLIV DDV+   Q+E L GN DWF +GSRI
Sbjct: 276 ISGGNLNKGNFNR----GINFIKERLHSRKVLIVLDDVDMYEQLEVLAGNHDWFGAGSRI 331

Query: 116 LITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG 175
           +IT +DK  L   GV+ IY ++ L + +ALKL   CAF  D P A Y++L    +KY +G
Sbjct: 332 IITTKDKTLLNMHGVDAIYNVEGLKYNEALKLFCWCAFKHDLPTADYMQLCKNFVKYIEG 391

Query: 176 VPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACF 235
           +P+A+K+LG F+  K  + W++A+ KL+ +P  ++Q+VL+IS+DGLDD +K+IFLDIACF
Sbjct: 392 LPLAIKVLGSFVKNKTIDEWKSALDKLKRIPHKDVQKVLRISFDGLDDNQKDIFLDIACF 451

Query: 236 LVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESI 295
             G+D+D V K L +C+FF  + I VL + SLI +S  NK+ MH+L++ MG EIVRQE++
Sbjct: 452 FKGQDKDFVAKILESCDFFPANDIRVLEENSLILVSN-NKLCMHNLLQEMGWEIVRQENV 510

Query: 296 NDPSKRSRLWHHKEIYEVLTEN 317
             P KRSRLW H E+  VLT N
Sbjct: 511 KYPGKRSRLWFHDEVNHVLTTN 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493496|ref|XP_003634615.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  296 bits (758), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 160/312 (51%), Positives = 212/312 (67%), Gaps = 6/312 (1%)

Query: 6   LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGN 65
           +GIWG+ G+GKT IA A + +I  +F+G  F  NVRE  +   L  L++ LLS +L  G 
Sbjct: 219 VGIWGMAGIGKTTIAEAIYDRIYTKFDGCCFLKNVREDSQRHGLTYLQETLLSQVL--GG 276

Query: 66  MNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQAL 125
           +N   N G+NF   RL  K+VLIV DDV H +Q+E L GN DWF SGSRI+IT R+K+ L
Sbjct: 277 INNL-NRGINFIKARLRPKRVLIVLDDVVHRQQLEALAGNHDWFGSGSRIIITTREKRLL 335

Query: 126 INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 185
           I   V++IY++++L + +ALKL  Q AF   HP   +++L H A+ Y  G+P+ALK+LG 
Sbjct: 336 IEQEVDEIYKVEKLEYDEALKLFCQYAFRYKHPTEDFMQLCHHAVDYTGGLPLALKVLGS 395

Query: 186 FLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVT 245
            L+RK    W++ + KL   P  E+  VLK S+DGLDD EKN+FLDIA F  GED+D V 
Sbjct: 396 CLYRKSIHEWKSELDKLNQFPNKEVLNVLKTSFDGLDDNEKNMFLDIAFFYKGEDKDFVI 455

Query: 246 KYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLW 305
           + L+   FF  S I  LVDKSLITIS+ NK+ MHDL++ MG EIVRQESI DP KRSRL 
Sbjct: 456 EVLD--NFFPVSEIGNLVDKSLITISD-NKLYMHDLLQEMGWEIVRQESIKDPGKRSRLR 512

Query: 306 HHKEIYEVLTEN 317
            H++I++VLT N
Sbjct: 513 VHEDIHDVLTTN 524

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496034|ref|XP_002277500.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  294 bits (753), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 151/316 (47%), Positives = 210/316 (66%), Gaps = 3/316 (0%)

Query: 2   DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL 61
           D   +GIWG+GG+GKT +A A ++++S +FEG  +  +  E      L  L+++LLS +L
Sbjct: 206 DVRMVGIWGMGGIGKTTLAQAIYNQVSSQFEGCSYLEDAGEDLRKRGLIGLQEKLLSQIL 265

Query: 62  NDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARD 121
              N+     I L     RL  ++V IV D+V     +E L+G+ DWF  GSRI+IT RD
Sbjct: 266 GHENIKLNGPISLK---ARLCSREVFIVLDNVYDQDILECLVGSHDWFGQGSRIIITTRD 322

Query: 122 KQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALK 181
           K+ L++ GV  +Y++K+LVH +A++ L + A  +      ++EL++  I YAQG+P+ LK
Sbjct: 323 KRLLMSHGVRVVYEVKKLVHTEAIEFLGRYASKQQIVIDEFMELSNSIITYAQGLPLVLK 382

Query: 182 ILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDR 241
           +LG FLF   K  W + + KL+  P   IQEVL+ISYDGLDDKEKNIFLDIACF  GED+
Sbjct: 383 VLGSFLFSMSKHEWRSELDKLKDTPHGRIQEVLRISYDGLDDKEKNIFLDIACFFKGEDK 442

Query: 242 DIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKR 301
           D V K L+ C FFA  GI  L+DKSLITIS  +KI MHDL++ MGR+I+RQ S  +P KR
Sbjct: 443 DHVIKILDGCGFFAVCGIRGLIDKSLITISNNDKIVMHDLLQEMGRKIIRQTSPKEPGKR 502

Query: 302 SRLWHHKEIYEVLTEN 317
           SRLW +K+ Y VL++N
Sbjct: 503 SRLWIYKDAYHVLSKN 518

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.927	0.266	0.421	4.1e-61
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.954	0.242	0.388	8.1e-58
TAIR|locus:2155347	1372	TTR1 "TOLERANT TO TOBACCO RING	0.954	0.228	0.402	8.6e-54
TAIR|locus:2146243	900	AT5G18360 [Arabidopsis thalian	0.939	0.343	0.388	1.7e-50
TAIR|locus:2122199	1607	AT4G36140 [Arabidopsis thalian	0.960	0.196	0.373	1.7e-49
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.945	0.224	0.371	4.4e-49
TAIR|locus:2122955	1309	AT4G19500 [Arabidopsis thalian	0.920	0.231	0.368	2.8e-48
TAIR|locus:2158485	1288	RRS1 "RESISTANT TO RALSTONIA S	0.920	0.235	0.387	5.7e-48
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.942	0.260	0.367	7.8e-48
TAIR|locus:2153368	697	AT5G45210 [Arabidopsis thalian	0.914	0.431	0.369	1.2e-47

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 634 (228.2 bits), Expect = 4.1e-61, P = 4.1e-61
 Identities = 135/320 (42%), Positives = 207/320 (64%)

Query:     6 LGIWGIGGVGKTAIAGAFFSKI------SRRFEGSYFAHNVREAEETGKLADLRKELLST 59
             +GIWG+GGVGKT IA A F  +      S +F+G+ F  +++E  + G +  L+  LLS 
Sbjct:   212 MGIWGMGGVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKE-NKRG-MHSLQNALLSE 269

Query:    60 LLND-GNMNKFPNIGLNFQSKRLTRKKVLIVFDDV-NHPRQIEFLIGNLDWFASGSRILI 117
             LL +  N N   + G +  + RL  KKVLIV DD+ N    +E+L G+LDWF +GSRI+I
Sbjct:   270 LLREKANYNNEED-GKHQMASRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIII 328

Query:   118 TARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP 177
             T RDK  +    +  IY++  L   ++++L  Q AFG++ P+ ++ +L+ E + YA+G+P
Sbjct:   329 TTRDKHLIEKNDI--IYEVTALPDHESIQLFKQHAFGKEVPNENFEKLSLEVVNYAKGLP 386

Query:   178 IALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLV 237
             +ALK+ G  L   R   W++AI  ++      I + LKISYDGL+ K++ +FLDIACFL 
Sbjct:   387 LALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYDGLEPKQQEMFLDIACFLR 446

Query:   238 GEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESIND 297
             GE++D + + L +C   A  G+ +L+DKSL+ ISEYN+++MHDL+++MG+ IV  +   D
Sbjct:   447 GEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYIVNFQK--D 504

Query:   298 PSKRSRLWHHKEIYEVLTEN 317
             P +RSRLW  KE+ EV++ N
Sbjct:   505 PGERSRLWLAKEVEEVMSNN 524

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 605 (218.0 bits), Expect = 8.1e-58, P = 8.1e-58
 Identities = 124/319 (38%), Positives = 198/319 (62%)

Query:     2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL 61
             D   LGIWG+GGVGKT IA   ++++S +F+   F  NV+E      +  L+ E L  + 
Sbjct:   205 DVRMLGIWGMGGVGKTTIAKYLYNQLSGQFQVHCFMENVKEVCNRYGVRRLQVEFLCRMF 264

Query:    62 NDGNMNKFPNIGL-NFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITAR 120
              + +   + ++   N   +R   K V IV DDV+   Q+  L+    WF  GSRI++T R
Sbjct:   265 QERDKEAWSSVSCCNIIKERFRHKMVFIVLDDVDRSEQLNELVKETGWFGPGSRIIVTTR 324

Query:   121 DKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDH--PDASYIELTHEAIKYAQGVPI 178
             D+  L++ G+N +Y++K L   +AL+L    AF  +   P   + EL+ +A+ YA G+P+
Sbjct:   325 DRHLLLSHGINLVYKVKCLPKKEALQLFCNYAFREEIILPHG-FEELSVQAVNYASGLPL 383

Query:   179 ALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVG 238
             AL++LG FL+R+ +  WE+ +++L+  P  +I EVL++SYDGLD++EK IFL I+CF   
Sbjct:   384 ALRVLGSFLYRRSQIEWESTLARLKTYPHSDIMEVLRVSYDGLDEQEKAIFLYISCFYNM 443

Query:   239 EDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDP 298
             +  D V K L+ C + A  GI +L +KSLI  S    +++HDL+  MGRE+VRQ+++N+P
Sbjct:   444 KQVDYVRKLLDLCGYAAEIGITILTEKSLIVESN-GCVKIHDLLEQMGRELVRQQAVNNP 502

Query:   299 SKRSRLWHHKEIYEVLTEN 317
             ++R  LW  ++I  +L+EN
Sbjct:   503 AQRLLLWDPEDICHLLSEN 521

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2155347 TTR1 "TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 568 (205.0 bits), Expect = 8.6e-54, P = 8.6e-54
 Identities = 130/323 (40%), Positives = 190/323 (58%)

Query:     1 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREA-EETGKLADLRKELLST 59
             +D   +GIWG+ G+GKT +A A F ++S  F+   F  +  +A +E G    L ++ L  
Sbjct:   161 LDIRCVGIWGMPGIGKTTLAKAVFDQMSGEFDAHCFIEDYTKAIQEKGVYCLLEEQFLKE 220

Query:    60 LLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITA 119
               N G       + L     RL  K+VL+V DDV  P  +E  +G  DWF   S I+IT+
Sbjct:   221 --NAGASGTVTKLSL--LRDRLNNKRVLVVLDDVRSPLVVESFLGGFDWFGPKSLIIITS 276

Query:   120 RDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA 179
             +DK     C VN+IY+++ L   +AL+L + CA   D  + +  E++ + IKYA G P+A
Sbjct:   277 KDKSVFRLCRVNQIYEVQGLNEKEALQLFSLCASIDDMAEQNLHEVSMKVIKYANGHPLA 336

Query:   180 LKILGRFLF-RKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVG 238
             L + GR L  +KR    E A  KL+  P     + +K SYD L+D+EKNIFLDIACF  G
Sbjct:   337 LNLYGRELMGKKRPPEMEIAFLKLKECPPAIFVDAIKSSYDTLNDREKNIFLDIACFFQG 396

Query:   239 EDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDP 298
             E+ D V + L  C FF   GI+VLV+KSL+TISE N++RMH+L++++GR+I+ +E+    
Sbjct:   397 ENVDYVMQLLEGCGFFPHVGIDVLVEKSLVTISE-NRVRMHNLIQDVGRQIINRET-RQT 454

Query:   299 SKRSRLWHHKEIYEVLTENMVSN 321
              +RSRLW    I + L E+   N
Sbjct:   455 KRRSRLWEPCSI-KYLLEDKEQN 476

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006952 "defense response" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009615 "response to virus" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

TAIR|locus:2146243 AT5G18360 [Arabidopsis thaliana (taxid:3702)]

 Score = 532 (192.3 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 124/319 (38%), Positives = 187/319 (58%)

Query:     6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKL------ADLRKELLST 59
             +GIWG  G+GKT IA A F+++S  F+ + F  NV+ +  T +L        L+++ LS 
Sbjct:   210 VGIWGPAGIGKTTIARALFNRLSENFQHTIFMENVKGSSRTSELDAYGFQLRLQEQFLSE 269

Query:    60 LLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITA 119
             +++  +M K  ++GL    +RL   KVL+V DDV+   Q++ L+    WF SGSRI++T 
Sbjct:   270 VIDHKHM-KIHDLGL--VKERLQDLKVLVVLDDVDKLEQLDALVKQSQWFGSGSRIIVTT 326

Query:   120 RDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA 179
              +KQ L   G+  IY++      D+L++  Q AFG        IEL  E  K A  +P+A
Sbjct:   327 ENKQLLRAHGITCIYELGFPSRSDSLQIFCQYAFGESSAPDGCIELATEITKLAGYLPLA 386

Query:   180 LKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGE 239
             LK+LG  L    K+  ++A+ +L      +I+ VL++ YDG+ DK+K IFL IAC   GE
Sbjct:   387 LKVLGSSLRGMSKDEQKSALPRLRTSLNEDIRNVLRVGYDGIHDKDKVIFLHIACLFNGE 446

Query:   240 DRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNK-IRMHDLMRNMGREIVRQESINDP 298
             + D V + L +     T G++VL  +SLI IS  N+ I MH+L+  +GREIV ++SI +P
Sbjct:   447 NVDYVKQILASSGLDVTFGLQVLTSRSLIHISRCNRTITMHNLLEQLGREIVCEQSIAEP 506

Query:   299 SKRSRLWHHKEIYEVLTEN 317
              KR  L    EIY+VL +N
Sbjct:   507 GKRQFLMDASEIYDVLADN 525

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122199 AT4G36140 [Arabidopsis thaliana (taxid:3702)]

 Score = 529 (191.3 bits), Expect = 1.7e-49, P = 1.7e-49
 Identities = 120/321 (37%), Positives = 182/321 (56%)

Query:     5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDG 64
             ++GIWG+ G+GKT +A AFF +IS  +E S F  +  +A     L  L +E    +L + 
Sbjct:   604 RIGIWGMPGIGKTTLAKAFFDQISGGYEASCFIKHFDKAFSGKGLHRLLEEHFGKILKEL 663

Query:    65 NMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA 124
                       +    +L++K+ L+V DDV++P   E  +    WF  GS I+IT+RDKQ 
Sbjct:   664 PRVCSSITRPSLPRDKLSKKRTLVVLDDVHNPLVAESFLEGFHWFGPGSLIIITSRDKQV 723

Query:   125 LINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG 184
                C +N +Y+++     +AL+L +QCAF RD  + + +EL+ + I YA G P+AL    
Sbjct:   724 FRLCQINHVYEVQSFNENEALQLFSQCAFRRDINEQNLLELSLKVIDYASGNPLALSFYC 783

Query:   185 RFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIV 244
             R L  K     E    KL+     +I ++ K SY+ LDD EKNIFLDIACF  GE+ D V
Sbjct:   784 RVLKGKELSEMETTFFKLKQRTPYKIFDLFKSSYETLDDNEKNIFLDIACFFSGENVDYV 843

Query:   245 TKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKR--S 302
              + L  C FF   GI+VLV+  L+TISE N+++MH ++++ GREI+  E++    +R  S
Sbjct:   844 MRLLEGCGFFPHVGIDVLVENCLVTISE-NRVKMHRIIQDFGREIIDGETVQIERRRRLS 902

Query:   303 RLWHHKEIYEVLTENMVSNYD 323
               W  K + E   + + +N D
Sbjct:   903 DPWSIKFLLE--DDELEANED 921

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 4.4e-49, P = 4.4e-49
 Identities = 118/318 (37%), Positives = 186/318 (58%)

Query:     6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVRE--AEETGKLADLRKELLSTLLND 63
             LG++G+GG+GKT +A AF++KI   FE   F  ++RE  + E G L  L+K L+  L   
Sbjct:   214 LGLYGMGGIGKTTLAKAFYNKIVGNFEQRAFISDIRERSSAENG-LVTLQKTLIKELFRL 272

Query:    64 GNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQ 123
                 +  +IGL      +  KK+++V DDV+H  Q+  L+G   W+  G+ I+IT RD +
Sbjct:   273 VPEIEDVSIGLEKIKANVHEKKIIVVLDDVDHIDQVHALVGETRWYGQGTLIVITTRDSE 332

Query:   124 ALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 183
              L    VN+ Y++K L    ALKL +  +  ++ P  + + L+ + ++ +  +P+A+++ 
Sbjct:   333 ILSKLSVNQQYEVKCLTEPQALKLFSYHSLRKEEPTKNLLALSKKIVQISGLLPLAVEVF 392

Query:   184 GRFLFRKRKEV-WENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIAC-FLVGE-D 240
             G  L+ K++E  W+  + KL+      +Q+VL++S+  LDD+EK +FLDIAC FL  E  
Sbjct:   393 GSLLYDKKEEKDWQTQLDKLKKTQPGNLQDVLELSFKSLDDEEKKVFLDIACLFLKMEIK 452

Query:   241 RDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSK 300
             +D V   L  C   A + + VL  KSL+ I   + + MHD +R+MGR++V +ES  DP  
Sbjct:   453 KDEVVIVLKGCGLNAEAALSVLRQKSLVKILANDTLWMHDQIRDMGRQMVLKESREDPGL 512

Query:   301 RSRLWHHKEIYEVLTENM 318
             RSRLW   EI  VL  NM
Sbjct:   513 RSRLWDRGEIMTVLN-NM 529

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2122955 AT4G19500 [Arabidopsis thaliana (taxid:3702)]

 Score = 516 (186.7 bits), Expect = 2.8e-48, P = 2.8e-48
 Identities = 115/312 (36%), Positives = 179/312 (57%)

Query:     6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGN 65
             +GIWGI G+GKT+IA   F   +  ++  YF  +     +  +   LR++ +S L  +  
Sbjct:   763 MGIWGIAGIGKTSIAREIFELHAPHYDFCYFLQDFHLMCQMKRPRQLREDFISKLFGEEK 822

Query:    66 MNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQAL 125
                  ++  +F      +K +L+V DDV++ R  E +IG   WF+ G RI++T+R KQ L
Sbjct:   823 GLGASDVKPSFMRDWFHKKTILLVLDDVSNARDAEAVIGGFGWFSHGHRIILTSRSKQVL 882

Query:   126 INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 185
             + C V K Y+I++L   ++ +L  Q   G ++P  S      E I  + G+P+ALK+L  
Sbjct:   883 VQCKVKKPYEIQKLSDFESFRLCKQYLDG-ENPVIS------ELISCSSGIPLALKLLVS 935

Query:   186 FLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVT 245
              + ++     ++ +  L   P  +IQE  + S+DGLD+ EKNIFLD+ACF  G+ +D   
Sbjct:   936 SVSKQYITNMKDHLQSLRKDPPTQIQEAFRRSFDGLDENEKNIFLDLACFFRGQSKDYAV 995

Query:   246 KYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLW 305
               L+AC FF   GI  L+D+SLI++ + NKI M    ++MGR IV +E   DP +RSRLW
Sbjct:   996 LLLDACGFFTYMGICELIDESLISLVD-NKIEMPIPFQDMGRIIVHEED-EDPCERSRLW 1053

Query:   306 HHKEIYEVLTEN 317
               K+I +VLT N
Sbjct:  1054 DSKDIVDVLTNN 1065

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2158485 RRS1 "RESISTANT TO RALSTONIA SOLANACEARUM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 513 (185.6 bits), Expect = 5.7e-48, P = 5.7e-48
 Identities = 122/315 (38%), Positives = 177/315 (56%)

Query:     6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNV-REAEETGKLADLRKELLSTLLNDG 64
             +GIWG+ G+GKT +A A F ++S  F+ S F  +  +   E G    L ++LL    ND 
Sbjct:   175 VGIWGMPGIGKTTLAKAVFDQMSSAFDASCFIEDYDKSIHEKGLYCLLEEQLLPG--NDA 232

Query:    65 NMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA 124
              + K  ++       RL  K+VL+V DDV +    E  +   DW   GS I+IT+RDKQ 
Sbjct:   233 TIMKLSSL-----RDRLNSKRVLVVLDDVRNALVGESFLEGFDWLGPGSLIIITSRDKQV 287

Query:   125 LINCGVNKIYQIKELVHVDALKL-LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL 183
                CG+N+IY+++ L   +A +L L   +   D  + +  EL+   I YA G P+A+ + 
Sbjct:   288 FCLCGINQIYEVQGLNEKEARQLFLLSASIKEDMGEQNLQELSVRVINYANGNPLAISVY 347

Query:   184 GRFLFRKRK-EVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRD 242
             GR L  K+K    E A  KL+  P  +I +  K +YD L D EKNIFLDIACF  GE+ +
Sbjct:   348 GRELKGKKKLSEMETAFLKLKRRPPFKIVDAFKSTYDTLSDNEKNIFLDIACFFQGENVN 407

Query:   243 IVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRS 302
              V + L  C FF    I+VLVDK L+TISE N++ +H L +++GREI+  E++    +R 
Sbjct:   408 YVIQLLEGCGFFPHVEIDVLVDKCLVTISE-NRVWLHKLTQDIGREIINGETVQI-ERRR 465

Query:   303 RLWHHKEIYEVLTEN 317
             RLW    I  +L  N
Sbjct:   466 RLWEPWSIKYLLEYN 480

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IMP;TAS

GO:0003677 "DNA binding" evidence=IDA

GO:0008219 "cell death" evidence=IMP

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 7.8e-48, P = 7.8e-48
 Identities = 116/316 (36%), Positives = 182/316 (57%)

Query:     8 IWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVRE-AEETGKLADLRKELLSTLLNDGNM 66
             I+G+GG+GKT +A   F++ S  FEGS F  N RE +++      L+ +LLS +L   ++
Sbjct:   217 IYGMGGIGKTTLAKVAFNEFSHLFEGSSFLENFREYSKKPEGRTHLQHQLLSDILRRNDI 276

Query:    67 NKFPNIGLNFQSK-RLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQAL 125
              +F   GL+   K R   K+VL+V DDV+   Q+     + D F  GSRI+IT R+   L
Sbjct:   277 -EFK--GLDHAVKERFRSKRVLLVVDDVDDVHQLNSAAIDRDCFGHGSRIIITTRNMHLL 333

Query:   126 INCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR 185
                     Y  KEL   ++L+L +  AF    P   +++ + E + Y  G+P+A+++LG 
Sbjct:   334 KQLRAEGSYSPKELDGDESLELFSWHAFRTSEPPKEFLQHSEEVVTYCAGLPLAVEVLGA 393

Query:   186 FLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDIVT 245
             FL  +    WE+ +  L+ +P   IQ  L+IS++ L  ++K++FLDIACF +G D   V 
Sbjct:   394 FLIERSIREWESTLKLLKRIPNDNIQAKLQISFNALTIEQKDVFLDIACFFIGVDSYYVA 453

Query:   246 KYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLW 305
               L+ C  +    + +L+++ LITIS  N I MHDL+R+MGR+IVR+ S     +RSRLW
Sbjct:   454 CILDGCNLYPDIVLSLLMERCLITISG-NNIMMHDLLRDMGRQIVREISPKKCGERSRLW 512

Query:   306 HHKEIYEVLTENMVSN 321
              H ++  VL +   +N
Sbjct:   513 SHNDVVGVLKKKSGTN 528

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153368 AT5G45210 [Arabidopsis thaliana (taxid:3702)]

 Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
 Identities = 116/314 (36%), Positives = 178/314 (56%)

Query:     6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGN 65
             LG+WG+ G+GKT IA A F ++S+ F+ S+F  +  +    G+   LR+E L  +   G+
Sbjct:   194 LGLWGMPGIGKTTIAEAAFKQMSKDFDASFFVEDFHKEYHKGRPYKLREEHLKKVPKGGS 253

Query:    66 MNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQAL 125
             + + P   L+F  K L  KKVL V DDV +    E  +G ++  + GS I++T+RDKQ L
Sbjct:   254 I-RGPI--LSF--KELREKKVLFVLDDVRNLMDFESFLGGIEGVSPGSVIILTSRDKQVL 308

Query:   126 INCGVNKIYQIKELVHVDALKLLNQCAFGRDHP-DASYIELTHEAIKYAQGVPIALKILG 184
               C V  ++++  L   +A++L  + AF ++ P DA  ++++ +  +YA G P AL   G
Sbjct:   309 HQCQVEDVFEVPSLNEEEAVRLFARTAFHKEGPSDAKLMDVSKKVARYAGGNPKALCFYG 368

Query:   185 RFLFRKRK-EVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFLVGEDRDI 243
             R L +K+K E  E    K+   P  EI  + + SYD L+D E++IFLDIACF  GE  D 
Sbjct:   369 RELEKKKKPEEMEEEFEKMRQCPPQEILSLFRSSYDALNDNERSIFLDIACFFNGEPCDD 428

Query:   244 VTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSR 303
             V + L  C FF   GI+ L ++SL+TIS+  ++ M   +++  RE      IN  S+R R
Sbjct:   429 VMRILEGCGFFPHVGIDRLAERSLLTISKEKRVEMQGFIQDAAREF-----INQTSRRRR 483

Query:   304 LWHHKEIYEVLTEN 317
              W    I  +L EN
Sbjct:   484 HWEPSRI-RLLLEN 496

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021827001 SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (888 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-53
pfam00931	285	pfam00931, NB-ARC, NB-ARC domain	1e-24

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  187 bits (475), Expect = 6e-53
 Identities = 111/324 (34%), Positives = 180/324 (55%), Gaps = 17/324 (5%)

Query: 6   LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNV-----REAEETGKLAD------LRK 54
           +GIWG  G+GKT IA A FS++SR+F+ S F          E   +    D      L++
Sbjct: 210 VGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQR 269

Query: 55  ELLSTLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSR 114
             LS +L+  ++ K  ++G     +RL  +KVLI  DD++    ++ L G   WF SGSR
Sbjct: 270 AFLSEILDKKDI-KIYHLGA--MEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSR 326

Query: 115 ILITARDKQALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ 174
           I++  +DK  L   G++ IY++    +  AL++  + AF ++ P   ++EL  E    A 
Sbjct: 327 IIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAG 386

Query: 175 GVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDD-KEKNIFLDIA 233
            +P+ L +LG +L  + KE W + + +L      +I++ L++SYDGL++ K+K IF  IA
Sbjct: 387 NLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIFRHIA 446

Query: 234 CFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQE 293
           C   GE  + +   L   +     G++ LVDKSLI +   + + MH L++ MG+EIVR +
Sbjct: 447 CLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQ 505

Query: 294 SINDPSKRSRLWHHKEIYEVLTEN 317
           S N+P +R  L   K+I +VL +N
Sbjct: 506 S-NEPGEREFLVDAKDICDVLEDN 528

syringae 6; Provisional. Length = 1153

>gnl|CDD|216202 pfam00931, NB-ARC, NB-ARC domain

 Score =  100 bits (252), Expect = 1e-24
 Identities = 63/260 (24%), Positives = 119/260 (45%), Gaps = 14/260 (5%)

Query: 6   LGIWGIGGVGKTAIAGAFFSK--ISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLND 63
           +GI G+GGVGKT +A   ++   +   F+   +    +   E     D+ +EL     + 
Sbjct: 22  VGIVGMGGVGKTTLAKQIYNDDSVGGHFDSVAWVVVSKTYTEFRLQKDILQELGLDDSDW 81

Query: 64  GNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQ 123
              N+  +       + L RK+ L+V DDV      + +        +GSR+++T R + 
Sbjct: 82  VEKNE--SELAVKIKEALLRKRFLLVLDDVWEKNDWDKIGVPFPDGENGSRVIVTTRSES 139

Query: 124 ALINCGV-NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIE-LTHEAIKYAQGVPIALK 181
                G  +K ++++ L   ++ +L +   F ++ P    +E +  E ++  +G+P+ALK
Sbjct: 140 VAGRMGGTSKPHEVESLEPEESWELFSNKVFEKELPPCPELEEVAKEIVEKCKGLPLALK 199

Query: 182 ILGRFL-FRKRKEVWENAISKL-----EMVPQMEIQEVLKISYDGLDDKEKNIFLDIACF 235
           +LG  L F+   + WE+ + +L           E+  +L +SYD L    K  FL +A F
Sbjct: 200 VLGGLLAFKSTVQEWEHVLEQLNNELAGRDGLNEVLSILSLSYDNLPMHLKRCFLYLALF 259

Query: 236 LVGED--RDIVTKYLNACEF 253
               +  ++ + K   A  F
Sbjct: 260 PEDYNIRKEQLIKLWIAEGF 279

Length = 285

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
PLN03210	1153	Resistant to P. syringae 6; Provisional	100.0
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	100.0
PF00931	287	NB-ARC: NB-ARC domain; InterPro: IPR002182 This is	100.0
PRK04841	903	transcriptional regulator MalT; Provisional	99.88
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	99.86
COG3899	849	Predicted ATPase [General function prediction only	99.56
PRK00411	394	cdc6 cell division control protein 6; Reviewed	99.49
PF05729	166	NACHT: NACHT domain	99.46
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	99.45
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	99.42
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	99.39
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	99.31
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	99.31
COG2256	436	MGS1 ATPase related to the helicase subunit of the	99.27
COG3903	414	Predicted ATPase [General function prediction only	99.26
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	99.12
PRK06893	229	DNA replication initiation factor; Validated	99.12
PF13173	128	AAA_14: AAA domain	99.08
PF14516	331	AAA_35: AAA-like domain	99.03
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	99.02
TIGR00678	188	holB DNA polymerase III, delta' subunit. At positi	99.01
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	99.0
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	98.99
PRK14087	450	dnaA chromosomal replication initiation protein; P	98.97
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	98.96
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	98.95
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	98.92
PRK12402	337	replication factor C small subunit 2; Reviewed	98.92
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	98.92
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	98.92
KOG2028	554	consensus ATPase related to the helicase subunit o	98.91
PRK08727	233	hypothetical protein; Validated	98.91
PRK08084	235	DNA replication initiation factor; Provisional	98.88
PRK13342	413	recombination factor protein RarA; Reviewed	98.88
PRK09087	226	hypothetical protein; Validated	98.88
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	98.88
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	98.87
PRK05642	234	DNA replication initiation factor; Validated	98.86
PRK00440	319	rfc replication factor C small subunit; Reviewed	98.85
PRK04195	482	replication factor C large subunit; Provisional	98.85
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	98.84
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	98.83
PRK00149	450	dnaA chromosomal replication initiation protein; R	98.83
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	98.81
PLN03025	319	replication factor C subunit; Provisional	98.81
PRK08903	227	DnaA regulatory inactivator Hda; Validated	98.81
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	98.81
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	98.81
PRK05564	313	DNA polymerase III subunit delta'; Validated	98.8
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	98.8
PRK14086	617	dnaA chromosomal replication initiation protein; P	98.8
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	98.79
PRK07471	365	DNA polymerase III subunit delta'; Validated	98.77
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	98.76
PRK09112	351	DNA polymerase III subunit delta'; Validated	98.75
PRK07940	394	DNA polymerase III subunit delta'; Validated	98.74
PRK14088	440	dnaA chromosomal replication initiation protein; P	98.71
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	98.71
PRK12422	445	chromosomal replication initiation protein; Provis	98.7
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	98.69
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	98.68
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	98.67
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	98.66
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.66
PRK05896	605	DNA polymerase III subunits gamma and tau; Validat	98.66
PRK14950	585	DNA polymerase III subunits gamma and tau; Provisi	98.66
PRK14953	486	DNA polymerase III subunits gamma and tau; Provisi	98.66
PRK05707	328	DNA polymerase III subunit delta'; Validated	98.65
PRK13341	725	recombination factor protein RarA/unknown domain f	98.64
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	98.64
PRK09111	598	DNA polymerase III subunits gamma and tau; Validat	98.64
PRK06620	214	hypothetical protein; Validated	98.62
PRK14970	367	DNA polymerase III subunits gamma and tau; Provisi	98.61
PRK14959	624	DNA polymerase III subunits gamma and tau; Provisi	98.6
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	98.6
PTZ00112	1164	origin recognition complex 1 protein; Provisional	98.6
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	98.59
PRK06647	563	DNA polymerase III subunits gamma and tau; Validat	98.59
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	98.58
PRK08451	535	DNA polymerase III subunits gamma and tau; Validat	98.57
PRK07133	725	DNA polymerase III subunits gamma and tau; Validat	98.51
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	98.5
PF00004	132	AAA: ATPase family associated with various cellula	98.49
PRK08116	268	hypothetical protein; Validated	98.49
COG0593	408	DnaA ATPase involved in DNA replication initiation	98.48
PRK05563	559	DNA polymerase III subunits gamma and tau; Validat	98.47
PRK14965	576	DNA polymerase III subunits gamma and tau; Provisi	98.46
PRK14971	614	DNA polymerase III subunits gamma and tau; Provisi	98.46
PRK06305	451	DNA polymerase III subunits gamma and tau; Validat	98.45
PRK14948	620	DNA polymerase III subunits gamma and tau; Provisi	98.45
PF10443	431	RNA12: RNA12 protein; InterPro: IPR018850 Mitochon	98.44
COG1373	398	Predicted ATPase (AAA+ superfamily) [General funct	98.44
PRK08181	269	transposase; Validated	98.44
COG3267	269	ExeA Type II secretory pathway, component ExeA (pr	98.43
PRK08769	319	DNA polymerase III subunit delta'; Validated	98.4
PF05621	302	TniB: Bacterial TniB protein; InterPro: IPR008868	98.4
PRK03992	389	proteasome-activating nucleotidase; Provisional	98.4
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	98.39
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	98.39
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	98.38
CHL00181	287	cbbX CbbX; Provisional	98.36
PHA02544	316	44 clamp loader, small subunit; Provisional	98.36
PRK12377	248	putative replication protein; Provisional	98.35
PRK06871	325	DNA polymerase III subunit delta'; Validated	98.34
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	98.33
KOG0989	346	consensus Replication factor C, subunit RFC4 [Repl	98.33
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	98.3
CHL00176	638	ftsH cell division protein; Validated	98.3
COG2255	332	RuvB Holliday junction resolvasome, helicase subun	98.29
PRK06526	254	transposase; Provisional	98.29
PRK06964	342	DNA polymerase III subunit delta'; Validated	98.29
PRK09183	259	transposase/IS protein; Provisional	98.29
PRK08058	329	DNA polymerase III subunit delta'; Validated	98.25
PRK07399	314	DNA polymerase III subunit delta'; Validated	98.25
PRK07993	334	DNA polymerase III subunit delta'; Validated	98.24
smart00382	148	AAA ATPases associated with a variety of cellular	98.24
CHL00195	489	ycf46 Ycf46; Provisional	98.23
PRK06090	319	DNA polymerase III subunit delta'; Validated	98.23
cd01128	249	rho_factor Transcription termination factor rho is	98.23
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	98.22
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	98.18
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	98.17
COG1484	254	DnaC DNA replication protein [DNA replication, rec	98.17
PRK07952	244	DNA replication protein DnaC; Validated	98.17
PRK08939	306	primosomal protein DnaI; Reviewed	98.16
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	98.16
PRK06835	329	DNA replication protein DnaC; Validated	98.15
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	98.14
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	98.13
TIGR01241	495	FtsH_fam ATP-dependent metalloprotease FtsH. HflB(	98.12
PRK09376	416	rho transcription termination factor Rho; Provisio	98.11
KOG0744	423	consensus AAA+-type ATPase [Posttranslational modi	98.11
COG2812	515	DnaX DNA polymerase III, gamma/tau subunits [DNA r	98.11
PRK04132	846	replication factor C small subunit; Provisional	98.08
TIGR00767	415	rho transcription termination factor Rho. Members	98.07
PRK06921	266	hypothetical protein; Provisional	98.06
PRK08699	325	DNA polymerase III subunit delta'; Validated	98.06
COG0466	782	Lon ATP-dependent Lon protease, bacterial type [Po	98.04
PF05673	249	DUF815: Protein of unknown function (DUF815); Inte	98.02
CHL00095	821	clpC Clp protease ATP binding subunit	98.01
PF04665	241	Pox_A32: Poxvirus A32 protein; InterPro: IPR006758	98.0
KOG0741	744	consensus AAA+-type ATPase [Posttranslational modi	97.99
PTZ00202	550	tuzin; Provisional	97.98
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.97
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.96
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.94
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	97.93
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	97.91
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.89
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	97.88
PRK04296	190	thymidine kinase; Provisional	97.87
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.87
PRK10536	262	hypothetical protein; Provisional	97.87
TIGR03345	852	VI_ClpV1 type VI secretion ATPase, ClpV1 family. M	97.86
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.86
PF13177	162	DNA_pol3_delta2: DNA polymerase III, delta subunit	97.85
TIGR00602	637	rad24 checkpoint protein rad24. This family is bas	97.84
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.83
KOG0733	802	consensus Nuclear AAA ATPase (VCP subfamily) [Post	97.83
KOG0730	693	consensus AAA+-type ATPase [Posttranslational modi	97.83
TIGR01243	733	CDC48 AAA family ATPase, CDC48 subfamily. This sub	97.81
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	97.8
PF10236	309	DAP3: Mitochondrial ribosomal death-associated pro	97.8
TIGR02639	731	ClpA ATP-dependent Clp protease ATP-binding subuni	97.78
PRK06762	166	hypothetical protein; Provisional	97.78
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.77
KOG2543	438	consensus Origin recognition complex, subunit 5 [R	97.77
PRK10865	857	protein disaggregation chaperone; Provisional	97.76
PRK12608	380	transcription termination factor Rho; Provisional	97.76
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.74
PRK08118	167	topology modulation protein; Reviewed	97.73
KOG2004	906	consensus Mitochondrial ATP-dependent protease PIM	97.73
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.7
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.7
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	97.7
PHA00729	226	NTP-binding motif containing protein	97.7
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	97.66
PRK07261	171	topology modulation protein; Provisional	97.66
COG0470	325	HolB ATPase involved in DNA replication [DNA repli	97.66
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	97.66
cd00561	159	CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B	97.66
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.66
KOG0743	457	consensus AAA+-type ATPase [Posttranslational modi	97.65
KOG0735	952	consensus AAA+-type ATPase [Posttranslational modi	97.65
TIGR00763	775	lon ATP-dependent protease La. This protein is ind	97.64
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	97.62
PRK06067	234	flagellar accessory protein FlaH; Validated	97.61
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	97.6
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	97.59
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	97.58
PRK14974	336	cell division protein FtsY; Provisional	97.56
COG2607	287	Predicted ATPase (AAA+ superfamily) [General funct	97.54
cd01394	218	radB RadB. The archaeal protein radB shares simila	97.53
KOG0739	439	consensus AAA+-type ATPase [Posttranslational modi	97.53
PRK11034	758	clpA ATP-dependent Clp protease ATP-binding subuni	97.52
PF07724	171	AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR	97.52
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.52
COG0464	494	SpoVK ATPases of the AAA+ class [Posttranslational	97.51
PRK10787	784	DNA-binding ATP-dependent protease La; Provisional	97.5
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	97.49
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	97.49
PRK08233	182	hypothetical protein; Provisional	97.48
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	97.48
PRK10733	644	hflB ATP-dependent metalloprotease; Reviewed	97.47
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.47
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	97.47
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	97.46
CHL00095	821	clpC Clp protease ATP binding subunit	97.45
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.45
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.43
cd00983	325	recA RecA is a bacterial enzyme which has roles in	97.43
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.43
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	97.41
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	97.41
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	97.4
PTZ00301	210	uridine kinase; Provisional	97.4
KOG0734	752	consensus AAA+-type ATPase containing the peptidas	97.4
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.39
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.39
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.39
PRK05541	176	adenylylsulfate kinase; Provisional	97.38
PRK10865	857	protein disaggregation chaperone; Provisional	97.38
KOG0731	774	consensus AAA+-type ATPase containing the peptidas	97.37
KOG2227	529	consensus Pre-initiation complex, subunit CDC6, AA	97.36
COG2884	223	FtsE Predicted ATPase involved in cell division [C	97.36
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	97.35
TIGR03346	852	chaperone_ClpB ATP-dependent chaperone ClpB. Membe	97.35
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.34
KOG0727	408	consensus 26S proteasome regulatory complex, ATPas	97.32
PRK09354	349	recA recombinase A; Provisional	97.32
KOG0736	953	consensus Peroxisome assembly factor 2 containing	97.32
TIGR00708	173	cobA cob(I)alamin adenosyltransferase. Alternate n	97.31
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.31
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.31
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.3
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.3
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.3
cd00544	169	CobU Adenosylcobinamide kinase / adenosylcobinamid	97.3
PF13245	76	AAA_19: Part of AAA domain	97.3
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.29
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.29
PF03969	362	AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654	97.29
TIGR02237	209	recomb_radB DNA repair and recombination protein R	97.28
CHL00206	2281	ycf2 Ycf2; Provisional	97.28
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	97.27
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	97.27
cd01133	274	F1-ATPase_beta F1 ATP synthase beta subunit, nucle	97.27
TIGR02902	531	spore_lonB ATP-dependent protease LonB. Members of	97.26
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.26
COG4133	209	CcmA ABC-type transport system involved in cytochr	97.26
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.26
PRK13531	498	regulatory ATPase RavA; Provisional	97.26
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	97.26
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	97.25
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.24
PRK06696	223	uridine kinase; Validated	97.24
KOG0729	435	consensus 26S proteasome regulatory complex, ATPas	97.23
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	97.23
cd01121	372	Sms Sms (bacterial radA) DNA repair protein. This	97.22
cd03216	163	ABC_Carb_Monos_I This family represents the domain	97.22
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.2
PRK05480	209	uridine/cytidine kinase; Provisional	97.2
PRK04040	188	adenylate kinase; Provisional	97.2
PF03266	168	NTPase_1: NTPase; InterPro: IPR004948 This entry r	97.19
KOG1969	877	consensus DNA replication checkpoint protein CHL12	97.19
PRK05986	191	cob(I)alamin adenolsyltransferase/cobinamide ATP-d	97.19
PRK14531	183	adenylate kinase; Provisional	97.19
PRK14528	186	adenylate kinase; Provisional	97.16
COG1066	456	Sms Predicted ATP-dependent serine protease [Postt	97.16
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.16
PF02374	305	ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_	97.16
KOG1970	634	consensus Checkpoint RAD17-RFC complex, RAD17/RAD2	97.15
PF07726	131	AAA_3: ATPase family associated with various cellu	97.15
PRK07667	193	uridine kinase; Provisional	97.14
PRK00279	215	adk adenylate kinase; Reviewed	97.14
PRK06547	172	hypothetical protein; Provisional	97.14
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	97.13
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	97.13
KOG2228	408	consensus Origin recognition complex, subunit 4 [R	97.13
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.13
PRK10867	433	signal recognition particle protein; Provisional	97.12
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.12
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	97.12
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.11
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	97.11
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.11
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.11
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	97.11
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	97.11
PRK05917	290	DNA polymerase III subunit delta'; Validated	97.1
PF13481	193	AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.	97.1
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	97.1
PRK07132	299	DNA polymerase III subunit delta'; Validated	97.09
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	97.09
PRK00131	175	aroK shikimate kinase; Reviewed	97.09
PRK03839	180	putative kinase; Provisional	97.09
PRK06217	183	hypothetical protein; Validated	97.08
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	97.08
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	97.08
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	97.08
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	97.07
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.07
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	97.06
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.04
TIGR00416	454	sms DNA repair protein RadA. The gene protuct code	97.04
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	97.03
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.03
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.03
COG0003	322	ArsA Predicted ATPase involved in chromosome parti	97.02
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.02
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	97.02
PTZ00088	229	adenylate kinase 1; Provisional	97.01
PLN02200	234	adenylate kinase family protein	97.0
cd03246	173	ABCC_Protease_Secretion This family represents the	97.0
PRK00889	175	adenylylsulfate kinase; Provisional	97.0
PRK11823	446	DNA repair protein RadA; Provisional	96.99
PRK12339	197	2-phosphoglycerate kinase; Provisional	96.99
PRK00625	173	shikimate kinase; Provisional	96.99
TIGR02238	313	recomb_DMC1 meiotic recombinase Dmc1. This model d	96.98
PRK05973	237	replicative DNA helicase; Provisional	96.97
PRK15453	290	phosphoribulokinase; Provisional	96.97
COG3910	233	Predicted ATPase [General function prediction only	96.97
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	96.96
PRK14527	191	adenylate kinase; Provisional	96.96
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	96.95
KOG0728	404	consensus 26S proteasome regulatory complex, ATPas	96.95
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	96.95
PLN02674	244	adenylate kinase	96.94
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	96.94
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	96.94
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	96.93
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	96.93
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	96.93
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.92
PLN03187	344	meiotic recombination protein DMC1 homolog; Provis	96.92
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	96.92
COG1875	436	NYN ribonuclease and ATPase of PhoH family domains	96.91
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.91
PRK14530	215	adenylate kinase; Provisional	96.9
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	96.9
PRK14737	186	gmk guanylate kinase; Provisional	96.89
PRK10875	615	recD exonuclease V subunit alpha; Provisional	96.89
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	96.88
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.88
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	96.88
PF12775	272	AAA_7: P-loop containing dynein motor region D3; P	96.87
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	96.87
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	96.87
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	96.87
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	96.87
TIGR00959	428	ffh signal recognition particle protein. This mode	96.86
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	96.85
PRK14529	223	adenylate kinase; Provisional	96.85
PRK07276	290	DNA polymerase III subunit delta'; Validated	96.85
PRK05818	261	DNA polymerase III subunit delta'; Validated	96.85
KOG3928	461	consensus Mitochondrial ribosome small subunit com	96.85
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	96.84
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	96.84
PRK03846	198	adenylylsulfate kinase; Provisional	96.84
COG3854	308	SpoIIIAA ncharacterized protein conserved in bacte	96.83
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.83
TIGR02655	484	circ_KaiC circadian clock protein KaiC. Members of	96.83
PRK13808	333	adenylate kinase; Provisional	96.83
KOG0651	388	consensus 26S proteasome regulatory complex, ATPas	96.83
PRK06761	282	hypothetical protein; Provisional	96.82
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	96.82
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.82
PF14532	138	Sigma54_activ_2: Sigma-54 interaction domain; PDB:	96.81
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	96.81
PRK13947	171	shikimate kinase; Provisional	96.81
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	96.81
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	96.81
PRK00698	205	tmk thymidylate kinase; Validated	96.81
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.8
TIGR02768	744	TraA_Ti Ti-type conjugative transfer relaxase TraA	96.8
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	96.8
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	96.79
KOG0736	953	consensus Peroxisome assembly factor 2 containing	96.79
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	96.79
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.78
KOG0652	424	consensus 26S proteasome regulatory complex, ATPas	96.78
PF00158	168	Sigma54_activat: Sigma-54 interaction domain; Inte	96.78
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	96.78
COG0468	279	RecA RecA/RadA recombinase [DNA replication, recom	96.78
PRK13768	253	GTPase; Provisional	96.78
TIGR01447	586	recD exodeoxyribonuclease V, alpha subunit. This f	96.76
KOG2035	351	consensus Replication factor C, subunit RFC3 [Cell	96.76
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	96.76
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	96.76
KOG0726	440	consensus 26S proteasome regulatory complex, ATPas	96.75
PF02456	369	Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR	96.75
PRK14493	274	putative bifunctional molybdopterin-guanine dinucl	96.75
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.75
PRK00300	205	gmk guanylate kinase; Provisional	96.74
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	96.74
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	96.74
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	96.74
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	96.74
PRK08533	230	flagellar accessory protein FlaH; Reviewed	96.74
PLN02459	261	probable adenylate kinase	96.73
PRK00409	782	recombination and DNA strand exchange inhibitor pr	96.72
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	96.72
PRK14526	211	adenylate kinase; Provisional	96.71
COG5635	824	Predicted NTPase (NACHT family) [Signal transducti	96.7
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	96.7
PRK13949	169	shikimate kinase; Provisional	96.69
PRK10416	318	signal recognition particle-docking protein FtsY;	96.67
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	96.67
cd00984	242	DnaB_C DnaB helicase C terminal domain. The hexame	96.67
PRK13948	182	shikimate kinase; Provisional	96.67
PRK13973	213	thymidylate kinase; Provisional	96.67
KOG0737	386	consensus AAA+-type ATPase [Posttranslational modi	96.66
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	96.66
PRK14738	206	gmk guanylate kinase; Provisional	96.66
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	96.65
KOG1051	898	consensus Chaperone HSP104 and related ATP-depende	96.65
cd00046	144	DEXDc DEAD-like helicases superfamily. A diverse f	96.65
TIGR00176	155	mobB molybdopterin-guanine dinucleotide biosynthes	96.65
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	96.65
COG0465	596	HflB ATP-dependent Zn proteases [Posttranslational	96.65
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.64
PTZ00035	337	Rad51 protein; Provisional	96.64
COG1763	161	MobB Molybdopterin-guanine dinucleotide biosynthes	96.64
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.64
PRK14532	188	adenylate kinase; Provisional	96.63
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	96.63
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	96.63
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	96.62
PF00006	215	ATP-synt_ab: ATP synthase alpha/beta family, nucle	96.62
cd03114	148	ArgK-like The function of this protein family is u	96.61
PRK12338	319	hypothetical protein; Provisional	96.61
COG4619	223	ABC-type uncharacterized transport system, ATPase	96.61
KOG0738	491	consensus AAA+-type ATPase [Posttranslational modi	96.61
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	96.6
PRK13975	196	thymidylate kinase; Provisional	96.6
PRK05057	172	aroK shikimate kinase I; Reviewed	96.6
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	96.59
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	96.59
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	96.59
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	96.59
cd03116	159	MobB Molybdenum is an essential trace element in t	96.58
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	96.58
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	96.57
TIGR01448	720	recD_rel helicase, putative, RecD/TraA family. Thi	96.57
PRK13946	184	shikimate kinase; Provisional	96.56
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.56
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	96.56
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.56
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.56
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	96.56
PHA02530	300	pseT polynucleotide kinase; Provisional	96.55
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.54
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	96.54
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.54
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	96.54
cd02117	212	NifH_like This family contains the NifH (iron prot	96.53
TIGR02236	310	recomb_radA DNA repair and recombination protein R	96.53
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.53
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	96.53
TIGR02533	486	type_II_gspE general secretory pathway protein E.	96.53
COG0542	786	clpA ATP-binding subunits of Clp protease and DnaK	96.52
PRK11608	326	pspF phage shock protein operon transcriptional ac	96.52
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	96.51
TIGR01287	275	nifH nitrogenase iron protein. This model describe	96.51
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	96.51
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	96.5
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	96.5
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	96.5
KOG2170	344	consensus ATPase of the AAA+ superfamily [General	96.49
TIGR02974	329	phageshock_pspF psp operon transcriptional activat	96.49
PRK05439	311	pantothenate kinase; Provisional	96.48
PRK13764	602	ATPase; Provisional	96.47
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.47
PRK13826	1102	Dtr system oriT relaxase; Provisional	96.46
PF00154	322	RecA: recA bacterial DNA recombination protein; In	96.46
PRK15429	686	formate hydrogenlyase transcriptional activator Fh	96.46
PRK04182	180	cytidylate kinase; Provisional	96.45
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	96.45
PRK08356	195	hypothetical protein; Provisional	96.44
PRK09825	176	idnK D-gluconate kinase; Provisional	96.44
PRK04301	317	radA DNA repair and recombination protein RadA; Va	96.43
PRK04328	249	hypothetical protein; Provisional	96.42
TIGR01817	534	nifA Nif-specific regulatory protein. This model r	96.42
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	96.42
PRK12678	672	transcription termination factor Rho; Provisional	96.42
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	96.41
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	96.41
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	96.41
cd02040	270	NifH NifH gene encodes component II (iron protein)	96.4
PRK02496	184	adk adenylate kinase; Provisional	96.4
KOG1514	767	consensus Origin recognition complex, subunit 1, a	96.4
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	96.39
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	96.38
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	96.38
PF06068	398	TIP49: TIP49 C-terminus; InterPro: IPR010339 This	96.38
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	96.37
PRK13889	988	conjugal transfer relaxase TraA; Provisional	96.37
COG1224	450	TIP49 DNA helicase TIP49, TBP-interacting protein	96.36
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	96.36
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	96.35

>PLN03210 Resistant to P

Probab=100.00  E-value=2.5e-39  Score=326.53  Aligned_cols=316  Identities=35%  Similarity=0.625  Sum_probs=262.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEecc--c---hhhhc------CChHHHHHHHHHHHhcCCCCCCCC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNV--R---EAEET------GKLADLRKELLSTLLNDGNMNKFP   70 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~--~---~~~~~------~~~~~~~~~i~~~~~~~~~~~~~~   70 (329)
                      ++++|+|+||+|+||||||+.+++++..+|+..+|+...  .   .....      .....+...++..+...... .. 
T Consensus       206 ~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~-~~-  283 (1153)
T PLN03210        206 EVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDI-KI-  283 (1153)
T ss_pred             ceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCc-cc-
Confidence            578999999999999999999999999999988887421  0   00000      01123344444444333211 11 


Q ss_pred             CcchHHHHhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEecCCChhhhHHHHhh
Q 020206           71 NIGLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        71 ~~~~~~l~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                       .....+++.+.++++||||||||+...++.+.....+.++|++||||||+..++........++++.++.++|+++|..
T Consensus       284 -~~~~~~~~~L~~krvLLVLDdv~~~~~l~~L~~~~~~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~  362 (1153)
T PLN03210        284 -YHLGAMEERLKHRKVLIFIDDLDDQDVLDALAGQTQWFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCR  362 (1153)
T ss_pred             -CCHHHHHHHHhCCeEEEEEeCCCCHHHHHHHHhhCccCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHH
Confidence             1235677788899999999999999988888776555678999999999998887666678999999999999999999


Q ss_pred             hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHHHHHHhhhcCCCh-hhHhHH
Q 020206          151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDD-KEKNIF  229 (329)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~-~~~~~l  229 (329)
                      .+++...+.....+++.+++++|+|+||||+.+|+.|+..+..+|+..++++.......+..+++.+|+.|++ ..|.+|
T Consensus       363 ~Af~~~~~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~~~I~~~L~~SYd~L~~~~~k~~F  442 (1153)
T PLN03210        363 SAFKKNSPPDGFMELASEVALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLDGKIEKTLRVSYDGLNNKKDKAIF  442 (1153)
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCccHHHHHHHHHhhhccCccchhhhh
Confidence            9987766666678889999999999999999999999999999999999999887788899999999999986 589999


Q ss_pred             HhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhccceeeecCCceeccHHHHHHHHHHHHhcCCCCCCCCccccCcch
Q 020206          230 LDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVRQESINDPSKRSRLWHHKE  309 (329)
Q Consensus       230 ~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~H~lir~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (329)
                      +++|+|+.+.+.+.+..++...+......++.|++++||+.. .++|.||+++|++++++++++. .++..+.++|.+.+
T Consensus       443 l~ia~ff~~~~~~~v~~~l~~~~~~~~~~l~~L~~ksLi~~~-~~~~~MHdLl~~~~r~i~~~~~-~~~~~r~~l~~~~d  520 (1153)
T PLN03210        443 RHIACLFNGEKVNDIKLLLANSDLDVNIGLKNLVDKSLIHVR-EDIVEMHSLLQEMGKEIVRAQS-NEPGEREFLVDAKD  520 (1153)
T ss_pred             heehhhcCCCCHHHHHHHHHhcCCCchhChHHHHhcCCEEEc-CCeEEhhhHHHHHHHHHHHhhc-CCCCcceeEeCHHH
Confidence            999999988888888888877777777889999999999876 5679999999999999998886 67889999999999


Q ss_pred             HHHHHhhcccccc
Q 020206          310 IYEVLTENMVSNY  322 (329)
Q Consensus       310 ~~~~l~~~~~~~~  322 (329)
                      ++.+++++.|+..
T Consensus       521 i~~vl~~~~g~~~  533 (1153)
T PLN03210        521 ICDVLEDNTGTKK  533 (1153)
T ss_pred             HHHHHHhCcccce
Confidence            9999999887544

syringae 6; Provisional

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-40  Score=318.23  Aligned_cols=286  Identities=26%  Similarity=0.346  Sum_probs=247.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH---HhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC--CcchHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK---ISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP--NIGLNF   76 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~   76 (329)
                      +..+++|+||||+||||||+++.++   +..+|+.++|++    ++......+++.+|+..++.........  +.....
T Consensus       178 ~~~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~----VSk~f~~~~iq~~Il~~l~~~~~~~~~~~~~~~~~~  253 (889)
T KOG4658|consen  178 DVGIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVV----VSKEFTTRKIQQTILERLGLLDEEWEDKEEDELASK  253 (889)
T ss_pred             CCCEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEE----EcccccHHhHHHHHHHHhccCCcccchhhHHHHHHH
Confidence            3468999999999999999999984   568899999999    7788899999999999887654432222  347778


Q ss_pred             HHhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCC
Q 020206           77 QSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGR  155 (329)
Q Consensus        77 l~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~  155 (329)
                      +.+.+.++|++||+||||+..+|+.+...++...+|++|++|||++.+... +.....++++.|+++||+.+|.+.++..
T Consensus       254 i~~~L~~krfllvLDDIW~~~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~  333 (889)
T KOG4658|consen  254 LLNLLEGKRFLLVLDDIWEEVDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPN  333 (889)
T ss_pred             HHHHhccCceEEEEecccccccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccc
Confidence            888899999999999999999999999888877788999999999998887 6666789999999999999999998665


Q ss_pred             -CCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCC-CHHHHHHHHHhhccC-------ChhhHHHHHHhhhcCCChhhH
Q 020206          156 -DHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK-RKEVWENAISKLEMV-------PQMEIQEVLKISYDGLDDKEK  226 (329)
Q Consensus       156 -~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-~~~~~~~~~~~l~~~-------~~~~~~~~l~~~~~~L~~~~~  226 (329)
                       ....+..++.+++++++|+|+|||+..+|+.|+.. ...+|+.+.+.+.+.       ..+.+..++..||+.|+++.|
T Consensus       334 ~~~~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~lK  413 (889)
T KOG4658|consen  334 TLGSHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEELK  413 (889)
T ss_pred             cccccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHHHH
Confidence             34334579999999999999999999999999984 566899999987554       246788999999999999999


Q ss_pred             hHHHhhhcccCc--cChhHHHHHHHhCCcc------------hhhhHHHHhhccceeeecC----CceeccHHHHHHHHH
Q 020206          227 NIFLDIACFLVG--EDRDIVTKYLNACEFF------------ATSGIEVLVDKSLITISEY----NKIRMHDLMRNMGRE  288 (329)
Q Consensus       227 ~~l~~ls~~~~~--~~~~~l~~~~~~~~~~------------~~~~l~~L~~~~Ll~~~~~----~~~~~H~lir~~~~~  288 (329)
                      .||+++|+||.+  +..+.+..+|.++|+.            +.+++.+|++++|+.....    ..+.|||++|++|..
T Consensus       414 ~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe~al~  493 (889)
T KOG4658|consen  414 SCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVREMALW  493 (889)
T ss_pred             HHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHHHHHH
Confidence            999999999988  7899999999998843            4568999999999986542    469999999999999


Q ss_pred             HHH
Q 020206          289 IVR  291 (329)
Q Consensus       289 ~~~  291 (329)
                      ++.
T Consensus       494 ias  496 (889)
T KOG4658|consen  494 IAS  496 (889)
T ss_pred             Hhc
Confidence            998

>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []

Probab=100.00  E-value=6.4e-37  Score=266.85  Aligned_cols=249  Identities=28%  Similarity=0.425  Sum_probs=190.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH--HhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCC---CCCCcchHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK--ISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMN---KFPNIGLNF   76 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~   76 (329)
                      +.++|+|+|+||+|||+||.+++++  ...+|+.++|+.    .........+...++..+.......   .........
T Consensus        18 ~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~   93 (287)
T PF00931_consen   18 EVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVS----LSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQ   93 (287)
T ss_dssp             SSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEE----EES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHH
T ss_pred             CeEEEEEEcCCcCCcceeeeecccccccccccccccccc----ccccccccccccccccccccccccccccccccccccc
Confidence            5789999999999999999999988  788999999998    5555666889999999987764321   122226778


Q ss_pred             HHhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCC-CeEEEecCCChhhhHHHHhhhhcCC
Q 020206           77 QSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGV-NKIYQIKELVHVDALKLLNQCAFGR  155 (329)
Q Consensus        77 l~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~-~~~~~l~~l~~~e~~~ll~~~~~~~  155 (329)
                      +.+.+.++++||||||||+...++.+...+.....+++||+|||+..+...... ...+++++|+++|+.+||.+.++..
T Consensus        94 l~~~L~~~~~LlVlDdv~~~~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~  173 (287)
T PF00931_consen   94 LRELLKDKRCLLVLDDVWDEEDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRK  173 (287)
T ss_dssp             HHHHHCCTSEEEEEEEE-SHHHH-------HCHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSH
T ss_pred             chhhhccccceeeeeeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            888899999999999999999887777666555668999999999876554433 5789999999999999999988544


Q ss_pred             C-CCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC-CCHHHHHHHHHhhccC------ChhhHHHHHHhhhcCCChhhHh
Q 020206          156 D-HPDASYIELTHEAIKYAQGVPIALKILGRFLFR-KRKEVWENAISKLEMV------PQMEIQEVLKISYDGLDDKEKN  227 (329)
Q Consensus       156 ~-~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~~~~l~~~------~~~~~~~~l~~~~~~L~~~~~~  227 (329)
                      . ......++.+++|++.|+|+|+||..+|++++. ....+|....+.+...      ....+..++..+|+.|+++.|+
T Consensus       174 ~~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~  253 (287)
T PF00931_consen  174 ESESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDELRR  253 (287)
T ss_dssp             S----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTCCHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceechhcCCccHHH
Confidence            3 222334566899999999999999999999954 2456788887765433      2477999999999999999999


Q ss_pred             HHHhhhcccCc--cChhHHHHHHHhCCcc
Q 020206          228 IFLDIACFLVG--EDRDIVTKYLNACEFF  254 (329)
Q Consensus       228 ~l~~ls~~~~~--~~~~~l~~~~~~~~~~  254 (329)
                      ||.++|+||.+  ++.+.+..+|.+++..
T Consensus       254 ~f~~L~~f~~~~~i~~~~li~lW~~e~~i  282 (287)
T PF00931_consen  254 CFLYLSIFPEGVPIPRERLIRLWVAEGFI  282 (287)
T ss_dssp             HHHHGGGSGTTS-EEHHHHHHHHTT-HHT
T ss_pred             HHhhCcCCCCCceECHHHHHHHHHHCCCC
Confidence            99999999987  6799999999876554

This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.88  E-value=7.4e-21  Score=190.60  Aligned_cols=276  Identities=13%  Similarity=0.133  Sum_probs=178.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhh-hcCChHHHHHHHHHHHhcCCCC--CCC---------
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE-ETGKLADLRKELLSTLLNDGNM--NKF---------   69 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~--~~~---------   69 (329)
                      ..|++.|+||+|.||||++.++++..    +.+.|++    .. ....+..++..++..+......  +..         
T Consensus        31 ~~~~~~v~apaG~GKTtl~~~~~~~~----~~~~w~~----l~~~d~~~~~f~~~l~~~l~~~~~~~~~~~~~~~~~~~~  102 (903)
T PRK04841         31 NYRLVLVTSPAGYGKTTLISQWAAGK----NNLGWYS----LDESDNQPERFASYLIAALQQATNGHCSKSEALAQKRQY  102 (903)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhC----CCeEEEe----cCcccCCHHHHHHHHHHHHHHhcCcccchhhhhhccCCc
Confidence            46899999999999999999998642    2688987    43 2345566666666666422111  000         


Q ss_pred             CCc--chHHHHhhh-c-CceEEEEEecCCCh--hhHHHHhccc-CCCCCCcEEEEEeCchhHHHh--cC-CCeEEEec--
Q 020206           70 PNI--GLNFQSKRL-T-RKKVLIVFDDVNHP--RQIEFLIGNL-DWFASGSRILITARDKQALIN--CG-VNKIYQIK--  137 (329)
Q Consensus        70 ~~~--~~~~l~~~~-~-~~~~LlvlDdv~~~--~~~~~l~~~l-~~~~~~~~ilitsr~~~~~~~--~~-~~~~~~l~--  137 (329)
                      ...  ....+...+ . +++++|||||++..  ..+..++..+ ...+++..+|+|||..+....  .. ......+.  
T Consensus       103 ~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~  182 (903)
T PRK04841        103 ASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQ  182 (903)
T ss_pred             CCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHH
Confidence            110  122222222 2 57999999999532  2222222222 223567788899998532211  11 12234455  


Q ss_pred             --CCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHHHHH-
Q 020206          138 --ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVL-  214 (329)
Q Consensus       138 --~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l-  214 (329)
                        +|+.+|+.+++....... .    .++.+..|++.|+|||+++.+++..+...+. ........+.......+...+ 
T Consensus       183 ~l~f~~~e~~~ll~~~~~~~-~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~  256 (903)
T PRK04841        183 QLAFDHQEAQQFFDQRLSSP-I----EAAESSRLCDDVEGWATALQLIALSARQNNS-SLHDSARRLAGINASHLSDYLV  256 (903)
T ss_pred             hCCCCHHHHHHHHHhccCCC-C----CHHHHHHHHHHhCChHHHHHHHHHHHhhCCC-chhhhhHhhcCCCchhHHHHHH
Confidence              899999999998765222 1    2344889999999999999999887755321 111122222222234455544 


Q ss_pred             HhhhcCCChhhHhHHHhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhccceee-ec--CCceeccHHHHHHHHHHHH
Q 020206          215 KISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITI-SE--YNKIRMHDLMRNMGREIVR  291 (329)
Q Consensus       215 ~~~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~-~~--~~~~~~H~lir~~~~~~~~  291 (329)
                      ...++.||++.++++..+|+++ .++.+.+..+++  ..+....|+.|.+.+|+.. .+  ..+|++|+++|++++..+.
T Consensus       257 ~~v~~~l~~~~~~~l~~~a~~~-~~~~~l~~~l~~--~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~  333 (903)
T PRK04841        257 EEVLDNVDLETRHFLLRCSVLR-SMNDALIVRVTG--EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQ  333 (903)
T ss_pred             HHHHhcCCHHHHHHHHHhcccc-cCCHHHHHHHcC--CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHH
Confidence            4458999999999999999986 788777766664  3456788999999999653 32  2379999999999999986


Q ss_pred             hcC
Q 020206          292 QES  294 (329)
Q Consensus       292 ~~~  294 (329)
                      ...
T Consensus       334 ~~~  336 (903)
T PRK04841        334 WEL  336 (903)
T ss_pred             hcC
Confidence            543

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=99.86  E-value=2.3e-20  Score=173.61  Aligned_cols=275  Identities=16%  Similarity=0.166  Sum_probs=188.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh-cCChHHHHHHHHHHHhcCCCCCCCCCc--------
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE-TGKLADLRKELLSTLLNDGNMNKFPNI--------   72 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~--------   72 (329)
                      +.|++.|..|+|.|||||+.++++ ....-..+.|++    .++ ...+..++..++..+....+.......        
T Consensus        36 ~~RL~li~APAGfGKttl~aq~~~-~~~~~~~v~Wls----lde~dndp~rF~~yLi~al~~~~p~~~~~a~~l~q~~~~  110 (894)
T COG2909          36 DYRLILISAPAGFGKTTLLAQWRE-LAADGAAVAWLS----LDESDNDPARFLSYLIAALQQATPTLGDEAQTLLQKHQY  110 (894)
T ss_pred             CceEEEEeCCCCCcHHHHHHHHHH-hcCcccceeEee----cCCccCCHHHHHHHHHHHHHHhCccccHHHHHHHHhccc
Confidence            579999999999999999999998 555667899998    443 567788888888777633221011000        


Q ss_pred             -----chHHHHhhhc--CceEEEEEecCC---Ch---hhHHHHhcccCCCCCCcEEEEEeCchhHHHhcC---CCeEEEe
Q 020206           73 -----GLNFQSKRLT--RKKVLIVFDDVN---HP---RQIEFLIGNLDWFASGSRILITARDKQALINCG---VNKIYQI  136 (329)
Q Consensus        73 -----~~~~l~~~~~--~~~~LlvlDdv~---~~---~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~---~~~~~~l  136 (329)
                           ++..+...+.  .+++.+||||.+   ++   +.++.++..   .+++..+++|||+.+.....+   ....+++
T Consensus       111 ~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~---~P~~l~lvv~SR~rP~l~la~lRlr~~llEi  187 (894)
T COG2909         111 VSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKH---APENLTLVVTSRSRPQLGLARLRLRDELLEI  187 (894)
T ss_pred             ccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHh---CCCCeEEEEEeccCCCCcccceeehhhHHhc
Confidence                 2233333222  368999999984   32   234444444   357889999999985543321   1122233


Q ss_pred             c----CCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHHH
Q 020206          137 K----ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQE  212 (329)
Q Consensus       137 ~----~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~  212 (329)
                      .    .|+.+|+.++|.... +..-    ....++.|.+.++|++-|+.+.+-.++.+...  ......+......-...
T Consensus       188 ~~~~Lrf~~eE~~~fl~~~~-~l~L----d~~~~~~L~~~teGW~~al~L~aLa~~~~~~~--~q~~~~LsG~~~~l~dY  260 (894)
T COG2909         188 GSEELRFDTEEAAAFLNDRG-SLPL----DAADLKALYDRTEGWAAALQLIALALRNNTSA--EQSLRGLSGAASHLSDY  260 (894)
T ss_pred             ChHhhcCChHHHHHHHHHcC-CCCC----ChHHHHHHHhhcccHHHHHHHHHHHccCCCcH--HHHhhhccchHHHHHHH
Confidence            3    489999999998775 2211    12338999999999999999999888843311  12233333332222344


Q ss_pred             HHHhhhcCCChhhHhHHHhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhcccee---eecCCceeccHHHHHHHHHH
Q 020206          213 VLKISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLIT---ISEYNKIRMHDLMRNMGREI  289 (329)
Q Consensus       213 ~l~~~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~---~~~~~~~~~H~lir~~~~~~  289 (329)
                      +.+..+++||++.|.++..+|++. .++.+...++.  ...++...|++|.+++|+-   .+++++|++|+++.+|.+.+
T Consensus       261 L~eeVld~Lp~~l~~FLl~~svl~-~f~~eL~~~Lt--g~~ng~amLe~L~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r  337 (894)
T COG2909         261 LVEEVLDRLPPELRDFLLQTSVLS-RFNDELCNALT--GEENGQAMLEELERRGLFLQRLDDEGQWFRYHHLFAEFLRQR  337 (894)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHhHH-HhhHHHHHHHh--cCCcHHHHHHHHHhCCCceeeecCCCceeehhHHHHHHHHhh
Confidence            677889999999999999999983 44555544454  3445667899999999854   34467899999999999999


Q ss_pred             HHhcC
Q 020206          290 VRQES  294 (329)
Q Consensus       290 ~~~~~  294 (329)
                      ...+.
T Consensus       338 ~~~~~  342 (894)
T COG2909         338 LQREL  342 (894)
T ss_pred             hcccc
Confidence            88754

>COG3899 Predicted ATPase [General function prediction only]

Probab=99.56  E-value=1.6e-13  Score=134.25  Aligned_cols=226  Identities=15%  Similarity=0.217  Sum_probs=141.2

Q ss_pred             CceEEEEEecC-CChhh----HHHHhcccC--CC-CCCcEEEEEeCch--hHHHhcCCCeEEEecCCChhhhHHHHhhhh
Q 020206           83 RKKVLIVFDDV-NHPRQ----IEFLIGNLD--WF-ASGSRILITARDK--QALINCGVNKIYQIKELVHVDALKLLNQCA  152 (329)
Q Consensus        83 ~~~~LlvlDdv-~~~~~----~~~l~~~l~--~~-~~~~~ilitsr~~--~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~  152 (329)
                      .++.++|+||+ |-+..    ++.++....  .. ....-.+.+.+..  ...........+.|.||+..+...++....
T Consensus       153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l  232 (849)
T COG3899         153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATL  232 (849)
T ss_pred             cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHh
Confidence            46999999999 54443    343433322  00 0011122233332  122222355789999999999999999887


Q ss_pred             cCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCC-------CHHHHHHHHHhhcc-CChhhHHHHHHhhhcCCChh
Q 020206          153 FGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK-------RKEVWENAISKLEM-VPQMEIQEVLKISYDGLDDK  224 (329)
Q Consensus       153 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-------~~~~~~~~~~~l~~-~~~~~~~~~l~~~~~~L~~~  224 (329)
                      ......   .....+.+++++.|||+++..+.+.+..+       ....|..-...+.. ...+.+...+...++.||+.
T Consensus       233 ~~~~~~---~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~i~~~~~~~~vv~~l~~rl~kL~~~  309 (849)
T COG3899         233 GCTKLL---PAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIASLGILATTDAVVEFLAARLQKLPGT  309 (849)
T ss_pred             CCcccc---cchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHhcCCchhhHHHHHHHHHHHhcCCHH
Confidence            332222   23458889999999999999999888663       23333333333221 11233556789999999999


Q ss_pred             hHhHHHhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhccceeeec--------CC-c-e-eccHHHHHHHHHHHHhc
Q 020206          225 EKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISE--------YN-K-I-RMHDLMRNMGREIVRQE  293 (329)
Q Consensus       225 ~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~--------~~-~-~-~~H~lir~~~~~~~~~~  293 (329)
                      .|+++...||++..|+.+.+..++..........+......+++.+.+        .. . | ..|+++++.+...    
T Consensus       310 t~~Vl~~AA~iG~~F~l~~La~l~~~~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~vqqaaY~~----  385 (849)
T COG3899         310 TREVLKAAACIGNRFDLDTLAALAEDSPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRVQQAAYNL----  385 (849)
T ss_pred             HHHHHHHHHHhCccCCHHHHHHHHhhchHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHHHHHHhcc----
Confidence            999999999999999999999998643333333344444445554321        11 1 3 4588888887644    


Q ss_pred             CCCCCCCCccccCcchHHHHHhhccc
Q 020206          294 SINDPSKRSRLWHHKEIYEVLTENMV  319 (329)
Q Consensus       294 ~~~~~~~~~~~~~~~~~~~~l~~~~~  319 (329)
                          .....|...|-.+.+.|..+-.
T Consensus       386 ----i~~~~rq~~H~~i~~lL~~~~~  407 (849)
T COG3899         386 ----IPESQRQYLHLRIGQLLEQNIP  407 (849)
T ss_pred             ----CchhhHHHHHHHHHHHHHHhCC
Confidence                2333444567777777665544

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=99.49  E-value=1.2e-11  Score=112.67  Aligned_cols=258  Identities=14%  Similarity=0.056  Sum_probs=146.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC--CcchHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP--NIGLNFQS   78 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~l~   78 (329)
                      .+.+.|+|++|+|||++++.+++.+....+.  .+++.    +........++..++.++.....+....  ......+.
T Consensus        55 ~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~  130 (394)
T PRK00411         55 PLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYIN----CQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIA  130 (394)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEE----CCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHH
Confidence            3568999999999999999999987665422  33333    2233456677888888876532211111  11334444


Q ss_pred             hhhc--CceEEEEEecCCCh------hhHHHHhcccCCCCC-CcEEEEEeCchhHHHhc-------CCCeEEEecCCChh
Q 020206           79 KRLT--RKKVLIVFDDVNHP------RQIEFLIGNLDWFAS-GSRILITARDKQALINC-------GVNKIYQIKELVHV  142 (329)
Q Consensus        79 ~~~~--~~~~LlvlDdv~~~------~~~~~l~~~l~~~~~-~~~ilitsr~~~~~~~~-------~~~~~~~l~~l~~~  142 (329)
                      +.+.  +++++||||+++..      +.+..++........ +..+|.++.........       -....+.+++++.+
T Consensus       131 ~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~  210 (394)
T PRK00411        131 EYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTAD  210 (394)
T ss_pred             HHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHH
Confidence            4443  45789999999653      234444333222121 33456666554222111       12346889999999


Q ss_pred             hhHHHHhhhhcCCCCCCCchHHHHHHHHHHh---cC-CchHHHHHHhhhc----C----CCHHHHHHHHHhhccCChhhH
Q 020206          143 DALKLLNQCAFGRDHPDASYIELTHEAIKYA---QG-VPIALKILGRFLF----R----KRKEVWENAISKLEMVPQMEI  210 (329)
Q Consensus       143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~---~g-~Plal~~~~~~l~----~----~~~~~~~~~~~~l~~~~~~~~  210 (329)
                      +..+++..++.....+....+++++.+++.+   .| .+.++.++-....    .    -....+....+..       -
T Consensus       211 e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~-------~  283 (394)
T PRK00411        211 EIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKS-------E  283 (394)
T ss_pred             HHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH-------H
Confidence            9999999876322112223445566666666   33 4455555432211    1    1233333333333       1


Q ss_pred             HHHHHhhhcCCChhhHhHHHhhhccc----CccChhHHHHH-------HHhCC---cchhhhHHHHhhccceeee
Q 020206          211 QEVLKISYDGLDDKEKNIFLDIACFL----VGEDRDIVTKY-------LNACE---FFATSGIEVLVDKSLITIS  271 (329)
Q Consensus       211 ~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l~~~-------~~~~~---~~~~~~l~~L~~~~Ll~~~  271 (329)
                      ...+...+..||...+.++..++...    ..++...+...       .+.+.   ....+.+..|...|||+..
T Consensus       284 ~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~~~~~~~~~~~l~~L~~~glI~~~  358 (394)
T PRK00411        284 IVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYEPRTHTRFYEYINKLDMLGIINTR  358 (394)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHHHhcCCeEEE
Confidence            23456678999999999988777443    23444443322       11111   2234579999999999853

>PF05729 NACHT: NACHT domain

Probab=99.46  E-value=1.4e-12  Score=103.94  Aligned_cols=142  Identities=17%  Similarity=0.226  Sum_probs=87.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ   77 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l   77 (329)
                      |+++|+|++|+|||++++.++..+....      ...+|+. .+..........+...+..........      ....+
T Consensus         1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~~~~~------~~~~~   73 (166)
T PF05729_consen    1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFS-LRDISDSNNSRSLADLLFDQLPESIAP------IEELL   73 (166)
T ss_pred             CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEe-ehhhhhccccchHHHHHHHhhccchhh------hHHHH
Confidence            6899999999999999999999876553      2333333 333333222234444444443222111      11112


Q ss_pred             Hh-hhcCceEEEEEecCCChhh---------HHHHhcccCC--CCCCcEEEEEeCchhH---HHhcCCCeEEEecCCChh
Q 020206           78 SK-RLTRKKVLIVFDDVNHPRQ---------IEFLIGNLDW--FASGSRILITARDKQA---LINCGVNKIYQIKELVHV  142 (329)
Q Consensus        78 ~~-~~~~~~~LlvlDdv~~~~~---------~~~l~~~l~~--~~~~~~ilitsr~~~~---~~~~~~~~~~~l~~l~~~  142 (329)
                      .. .....+++||+|++++...         +..++..+..  ..++.++++|+|....   .........+.+.+|+++
T Consensus        74 ~~~~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~  153 (166)
T PF05729_consen   74 QELLEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEE  153 (166)
T ss_pred             HHHHHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHH
Confidence            11 2346799999999954322         2233322222  2568899999998754   223345568999999999


Q ss_pred             hhHHHHhhhh
Q 020206          143 DALKLLNQCA  152 (329)
Q Consensus       143 e~~~ll~~~~  152 (329)
                      +..+++++..
T Consensus       154 ~~~~~~~~~f  163 (166)
T PF05729_consen  154 DIKQYLRKYF  163 (166)
T ss_pred             HHHHHHHHHh
Confidence            9999998765

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=99.45  E-value=7.2e-12  Score=108.09  Aligned_cols=179  Identities=13%  Similarity=0.050  Sum_probs=108.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHH----
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS----   78 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~----   78 (329)
                      ...++|+|++|+|||||++.++..+...-...+++.     .......+++..++..++..... .........+.    
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~-----~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~  116 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLV-----NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLI  116 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeee-----CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHH
Confidence            347899999999999999999987653211122222     12335567777887776544221 11111112222    


Q ss_pred             h-hhcCceEEEEEecCCCh--hhHHHHh---cccCCCCCCcEEEEEeCchhHHHh-------c--CCCeEEEecCCChhh
Q 020206           79 K-RLTRKKVLIVFDDVNHP--RQIEFLI---GNLDWFASGSRILITARDKQALIN-------C--GVNKIYQIKELVHVD  143 (329)
Q Consensus        79 ~-~~~~~~~LlvlDdv~~~--~~~~~l~---~~l~~~~~~~~ilitsr~~~~~~~-------~--~~~~~~~l~~l~~~e  143 (329)
                      . ...+++.+||+||++..  ..++.+.   ...........+++|.........       .  .....+.+++++.+|
T Consensus       117 ~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e  196 (269)
T TIGR03015       117 EQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDREE  196 (269)
T ss_pred             HHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHHH
Confidence            2 23567889999999753  2333332   111111223355666654321110       1  123467899999999


Q ss_pred             hHHHHhhhhcCCC--CCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          144 ALKLLNQCAFGRD--HPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       144 ~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ..+++........  ......++.++.|++.++|+|..|..++..+
T Consensus       197 ~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~  242 (269)
T TIGR03015       197 TREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL  242 (269)
T ss_pred             HHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence            9999987763221  1223456889999999999999999988776

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=99.42  E-value=6.4e-12  Score=110.40  Aligned_cols=138  Identities=14%  Similarity=0.086  Sum_probs=92.6

Q ss_pred             CeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhH
Q 020206          131 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEI  210 (329)
Q Consensus       131 ~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~  210 (329)
                      ...+.+++++.++..+++.+.+....  ....++.++.|++.|+|+|..+..++..+..     ..... .......+.+
T Consensus       151 ~~~~~l~~l~~~e~~~il~~~~~~~~--~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~-----~a~~~-~~~~it~~~v  222 (305)
T TIGR00635       151 GIILRLEFYTVEELAEIVSRSAGLLN--VEIEPEAALEIARRSRGTPRIANRLLRRVRD-----FAQVR-GQKIINRDIA  222 (305)
T ss_pred             ceEEEeCCCCHHHHHHHHHHHHHHhC--CCcCHHHHHHHHHHhCCCcchHHHHHHHHHH-----HHHHc-CCCCcCHHHH
Confidence            34678999999999999998774322  2345677899999999999877665554310     00000 0001111111


Q ss_pred             H---HHHHhhhcCCChhhHhHHH-hhhcccC-ccChhHHHHHHHhCCcchhhhHH-HHhhccceeeecCCce
Q 020206          211 Q---EVLKISYDGLDDKEKNIFL-DIACFLV-GEDRDIVTKYLNACEFFATSGIE-VLVDKSLITISEYNKI  276 (329)
Q Consensus       211 ~---~~l~~~~~~L~~~~~~~l~-~ls~~~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Ll~~~~~~~~  276 (329)
                      .   ..+...+..+++..+..+. .+..+.+ +++.+.++..++.+....+..++ .|++++||+....|++
T Consensus       223 ~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~~~~~~~ia~~lg~~~~~~~~~~e~~Li~~~li~~~~~g~~  294 (305)
T TIGR00635       223 LKALEMLMIDELGLDEIDRKLLSVLIEQFQGGPVGLKTLAAALGEDADTIEDVYEPYLLQIGFLQRTPRGRI  294 (305)
T ss_pred             HHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCCcccHHHHHHHhCCCcchHHHhhhHHHHHcCCcccCCchhh
Confidence            1   1245567788888888776 3354543 48889999999888888888899 6999999986666644

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=99.39  E-value=3.7e-12  Score=112.75  Aligned_cols=137  Identities=14%  Similarity=0.064  Sum_probs=94.0

Q ss_pred             CeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhh-
Q 020206          131 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQME-  209 (329)
Q Consensus       131 ~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~-  209 (329)
                      ...+.+++++.++..+++........  ....++.+..|++.|+|.|..+..+...+..     |.... .-....... 
T Consensus       172 ~~~~~l~~~~~~e~~~il~~~~~~~~--~~~~~~~~~~ia~~~~G~pR~a~~~l~~~~~-----~a~~~-~~~~I~~~~v  243 (328)
T PRK00080        172 GIVQRLEFYTVEELEKIVKRSARILG--VEIDEEGALEIARRSRGTPRIANRLLRRVRD-----FAQVK-GDGVITKEIA  243 (328)
T ss_pred             CeeeecCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHHcCCCchHHHHHHHHHHH-----HHHHc-CCCCCCHHHH
Confidence            35688999999999999998763322  2245677999999999999766665554321     11110 001111111 


Q ss_pred             --HHHHHHhhhcCCChhhHhHHH-hhhcccC-ccChhHHHHHHHhCCcchhhhHH-HHhhccceeeecCCc
Q 020206          210 --IQEVLKISYDGLDDKEKNIFL-DIACFLV-GEDRDIVTKYLNACEFFATSGIE-VLVDKSLITISEYNK  275 (329)
Q Consensus       210 --~~~~l~~~~~~L~~~~~~~l~-~ls~~~~-~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Ll~~~~~~~  275 (329)
                        ....+...+..|++..+..+. .+..|.+ ++..+.++..++.+....++.++ .|++.+||+....|+
T Consensus       244 ~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~a~~lg~~~~~~~~~~e~~Li~~~li~~~~~gr  314 (328)
T PRK00080        244 DKALDMLGVDELGLDEMDRKYLRTIIEKFGGGPVGLDTLAAALGEERDTIEDVYEPYLIQQGFIQRTPRGR  314 (328)
T ss_pred             HHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCCceeHHHHHHHHCCCcchHHHHhhHHHHHcCCcccCCchH
Confidence              223345566788888888886 5556554 48999999999888888888889 999999998666663

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=99.31  E-value=2.1e-09  Score=96.96  Aligned_cols=259  Identities=16%  Similarity=0.083  Sum_probs=138.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCC------ceEEEeccchhhhcCChHHHHHHHHHHHhc--CCCCC-CCC-Cc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE------GSYFAHNVREAEETGKLADLRKELLSTLLN--DGNMN-KFP-NI   72 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~-~~~-~~   72 (329)
                      .+.+.|+|++|+|||++++.+++.+.+...      ..+|+.    +........++..++.++..  ...+. ... ..
T Consensus        40 ~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~  115 (365)
T TIGR02928        40 PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN----CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSE  115 (365)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE----CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHH
Confidence            357899999999999999999987653322      233333    22334566778888887742  11110 111 11


Q ss_pred             chHHHHhhh--cCceEEEEEecCCCh-----hhHHHHhcc--cCCCC-CCcEEEEEeCchhHHHhc------C-CCeEEE
Q 020206           73 GLNFQSKRL--TRKKVLIVFDDVNHP-----RQIEFLIGN--LDWFA-SGSRILITARDKQALINC------G-VNKIYQ  135 (329)
Q Consensus        73 ~~~~l~~~~--~~~~~LlvlDdv~~~-----~~~~~l~~~--l~~~~-~~~~ilitsr~~~~~~~~------~-~~~~~~  135 (329)
                      ....+.+.+  .+++++||||+++..     +.+..+...  ..... .+..+|.++.........      . ....+.
T Consensus       116 ~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~  195 (365)
T TIGR02928       116 VFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEII  195 (365)
T ss_pred             HHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceee
Confidence            223333333  356789999999654     112233222  11111 233455555443221111      1 124688


Q ss_pred             ecCCChhhhHHHHhhhhcCC---CCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC---------CCHHHHHHHHHhhc
Q 020206          136 IKELVHVDALKLLNQCAFGR---DHPDASYIELTHEAIKYAQGVPIALKILGRFLFR---------KRKEVWENAISKLE  203 (329)
Q Consensus       136 l~~l~~~e~~~ll~~~~~~~---~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~---------~~~~~~~~~~~~l~  203 (329)
                      +++++.+|..+++..+....   ...+++.-+.+..++..+.|.|.....+......         -....+....+.+ 
T Consensus       196 f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~-  274 (365)
T TIGR02928       196 FPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI-  274 (365)
T ss_pred             eCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-
Confidence            99999999999999887311   1112222234455666777998655443322110         1223333322222 


Q ss_pred             cCChhhHHHHHHhhhcCCChhhHhHHHhhhccc----CccChhHHHH----HHHhCC------cchhhhHHHHhhcccee
Q 020206          204 MVPQMEIQEVLKISYDGLDDKEKNIFLDIACFL----VGEDRDIVTK----YLNACE------FFATSGIEVLVDKSLIT  269 (329)
Q Consensus       204 ~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l~~----~~~~~~------~~~~~~l~~L~~~~Ll~  269 (329)
                            -...+...+..||.+.+.++..+....    ..++...+..    ++...+      ....+.+..|...|||+
T Consensus       275 ------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~l~~~gli~  348 (365)
T TIGR02928       275 ------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCEDIGVDPLTQRRISDLLNELDMLGLVE  348 (365)
T ss_pred             ------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcCCeE
Confidence                  123455678899999888877665321    1233333222    111111      12335789999999998


Q ss_pred             eec
Q 020206          270 ISE  272 (329)
Q Consensus       270 ~~~  272 (329)
                      ...
T Consensus       349 ~~~  351 (365)
T TIGR02928       349 AEE  351 (365)
T ss_pred             EEE
Confidence            543

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=99.31  E-value=2.3e-11  Score=102.48  Aligned_cols=178  Identities=20%  Similarity=0.182  Sum_probs=88.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHH------HHHHHHHHhcCCCCCC--------
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADL------RKELLSTLLNDGNMNK--------   68 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~i~~~~~~~~~~~~--------   68 (329)
                      .+.++|+|+.|+|||+|++++.+...+....++|+........ .....+      ...+...+........        
T Consensus        20 ~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~   98 (234)
T PF01637_consen   20 SQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNE-SSLRSFIEETSLADELSEALGISIPSITLEKISKDL   98 (234)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHH-HHHHHHHHHHHHHCHCHHHHHHHCCTSTTEEEECTS
T ss_pred             CcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhh-hHHHHHHHHHHHHHHHHHHHhhhcccccchhhhhcc
Confidence            4789999999999999999999987554434555542221111 111111      1111222221111000        


Q ss_pred             --CCCcchHHHHhhhc--CceEEEEEecCCChh-----------hHHHHhcccCCCCCCcEEEEEeCchhHHHh------
Q 020206           69 --FPNIGLNFQSKRLT--RKKVLIVFDDVNHPR-----------QIEFLIGNLDWFASGSRILITARDKQALIN------  127 (329)
Q Consensus        69 --~~~~~~~~l~~~~~--~~~~LlvlDdv~~~~-----------~~~~l~~~l~~~~~~~~ilitsr~~~~~~~------  127 (329)
                        ........+.+.+.  +++++||+||++...           .+..++.... ...+..+++++........      
T Consensus        99 ~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~v~~~S~~~~~~~~~~~~~  177 (234)
T PF01637_consen   99 SEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL-SQQNVSIVITGSSDSLMEEFLDDKS  177 (234)
T ss_dssp             -GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH-----TTEEEEEEESSHHHHHHTT-TTS
T ss_pred             hhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc-ccCCceEEEECCchHHHHHhhcccC
Confidence              11112222322222  245999999995333           1222222222 1334455566555433332      


Q ss_pred             --cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 020206          128 --CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKIL  183 (329)
Q Consensus       128 --~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  183 (329)
                        ......+.+++|+.+++.+++.......... +..++.++.+++.+||+|..|..+
T Consensus       178 ~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~gG~P~~l~~~  234 (234)
T PF01637_consen  178 PLFGRFSHIELKPLSKEEAREFLKELFKELIKL-PFSDEDIEEIYSLTGGNPRYLQEL  234 (234)
T ss_dssp             TTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHHHHH
T ss_pred             ccccccceEEEeeCCHHHHHHHHHHHHHHhhcc-cCCHHHHHHHHHHhCCCHHHHhcC
Confidence              2333459999999999999999875333111 234566899999999999988753

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=99.27  E-value=9.2e-11  Score=101.75  Aligned_cols=155  Identities=21%  Similarity=0.298  Sum_probs=98.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      +.-+++|||||+||||||+.++......|...-=+        .....++...+ ..                .-.....
T Consensus        48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv--------~~gvkdlr~i~-e~----------------a~~~~~~  102 (436)
T COG2256          48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAV--------TSGVKDLREII-EE----------------ARKNRLL  102 (436)
T ss_pred             CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccc--------cccHHHHHHHH-HH----------------HHHHHhc
Confidence            45688999999999999999999776554322111        12222222211 11                1122344


Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEE--EeCchhHHH---hcCCCeEEEecCCChhhhHHHHhhhhcC-
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILI--TARDKQALI---NCGVNKIYQIKELVHVDALKLLNQCAFG-  154 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ili--tsr~~~~~~---~~~~~~~~~l~~l~~~e~~~ll~~~~~~-  154 (329)
                      +++++|++|+|+  +..+.+.|++.+   ..|..++|  ||.|+....   .....+++.+++|+.++...++.+.... 
T Consensus       103 gr~tiLflDEIHRfnK~QQD~lLp~v---E~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~  179 (436)
T COG2256         103 GRRTILFLDEIHRFNKAQQDALLPHV---ENGTIILIGATTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDE  179 (436)
T ss_pred             CCceEEEEehhhhcChhhhhhhhhhh---cCCeEEEEeccCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhh
Confidence            789999999994  667777787775   35666666  555552111   1245578999999999999999883311 


Q ss_pred             CC----CCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          155 RD----HPDASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       155 ~~----~~~~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                      ..    ......+++.+.++..++|--...-.+..
T Consensus       180 ~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE  214 (436)
T COG2256         180 ERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLE  214 (436)
T ss_pred             hcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHH
Confidence            11    11123466788999999997765544433

>COG3903 Predicted ATPase [General function prediction only]

Probab=99.26  E-value=8.4e-12  Score=108.72  Aligned_cols=283  Identities=18%  Similarity=0.186  Sum_probs=189.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      ..|.+.++|++||||||++.+++. ....|.+.+|+.+...+..   ...+...+...++....+   .+.....+....
T Consensus        13 ~~RlvtL~g~ggvgkttl~~~~a~-~~~~~~~~v~~vdl~pitD---~~~v~~~~ag~~gl~~~~---g~~~~~~~~~~~   85 (414)
T COG3903          13 ALRLVTLTGAGGVGKTTLALQAAH-AASEYADGVAFVDLAPITD---PALVFPTLAGALGLHVQP---GDSAVDTLVRRI   85 (414)
T ss_pred             hhheeeeeccCccceehhhhhhHh-HhhhcccceeeeeccccCc---hhHhHHHHHhhccccccc---chHHHHHHHHHH
Confidence            458899999999999999999999 8889999998886555433   334444444444433221   111344566667


Q ss_pred             cCceEEEEEecCCCh-hhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEecCCChh-hhHHHHhhhhcC---CC
Q 020206           82 TRKKVLIVFDDVNHP-RQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHV-DALKLLNQCAFG---RD  156 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~-~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~-e~~~ll~~~~~~---~~  156 (329)
                      .+++.++++||..+. .....++..+..+.....++.|+|....   ........+++++.. ++.++|...+..   +-
T Consensus        86 ~~rr~llvldncehl~~~~a~~i~all~~~~~~~~~atsre~~l---~~ge~~~~~~~L~~~d~a~~lf~~ra~~~~~~f  162 (414)
T COG3903          86 GDRRALLVLDNCEHLLDACAALIVALLGACPRLAILATSREAIL---VAGEVHRRVPSLSLFDEAIELFVCRAVLVALSF  162 (414)
T ss_pred             hhhhHHHHhcCcHHHHHHHHHHHHHHHccchhhhhHHHhHhhhc---ccccccccCCccccCCchhHHHHHHHHHhccce
Confidence            788999999998554 3344444444444555567888887522   234456777887755 677887665511   11


Q ss_pred             CCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHh----hccC------ChhhHHHHHHhhhcCCChhhH
Q 020206          157 HPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISK----LEMV------PQMEIQEVLKISYDGLDDKEK  226 (329)
Q Consensus       157 ~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~----l~~~------~~~~~~~~l~~~~~~L~~~~~  226 (329)
                      .........+..|++..+|.|++|..++...+..........+++    +...      ........+..++.=|+.-++
T Consensus       163 ~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgwe~  242 (414)
T COG3903         163 WLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGWER  242 (414)
T ss_pred             eecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhHHH
Confidence            112233455889999999999999999999988654444333332    2221      124456778888888999999


Q ss_pred             hHHHhhhcccCccChhHHHHHHHhC-----CcchhhhHHHHhhccceeeec---CCceeccHHHHHHHHHHHHhcC
Q 020206          227 NIFLDIACFLVGEDRDIVTKYLNAC-----EFFATSGIEVLVDKSLITISE---YNKIRMHDLMRNMGREIVRQES  294 (329)
Q Consensus       227 ~~l~~ls~~~~~~~~~~l~~~~~~~-----~~~~~~~l~~L~~~~Ll~~~~---~~~~~~H~lir~~~~~~~~~~~  294 (329)
                      -.+..++.|...|..+.........     .+.+-..+..+++++++...+   .-.|+.-...|.|+.+++.+..
T Consensus       243 ~~~~rLa~~~g~f~~~l~~~~a~g~~~~~~~y~~~~a~~ll~~kslv~a~~~~~~a~~Rl~eT~r~YalaeL~r~~  318 (414)
T COG3903         243 ALFGRLAVFVGGFDLGLALAVAAGADVDVPRYLVLLALTLLVDKSLVVALDLLGRARYRLLETGRRYALAELHRSG  318 (414)
T ss_pred             HHhcchhhhhhhhcccHHHHHhcCCccccchHHHHHHHHHHhhccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999888887433322221     122334577888999887443   3358888899999998888765

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=99.12  E-value=4.8e-10  Score=85.58  Aligned_cols=115  Identities=20%  Similarity=0.273  Sum_probs=74.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC-----CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR-----FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNF   76 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   76 (329)
                      +.+.+.|+|++|+|||+++.++++.+...     ...++|+.    .........+...++..+..............+.
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~   78 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVN----CPSSRTPRDFAQEILEALGLPLKSRQTSDELRSL   78 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEE----HHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEE----eCCCCCHHHHHHHHHHHhCccccccCCHHHHHHH
Confidence            46789999999999999999999976543     35566766    5555689999999999998776641222224455


Q ss_pred             HHhhhcCc-eEEEEEecCCCh---hhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           77 QSKRLTRK-KVLIVFDDVNHP---RQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        77 l~~~~~~~-~~LlvlDdv~~~---~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      +.+.+... ..+||+|+++..   +.+..+.....  ..+.++|++.+..
T Consensus        79 ~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~~  126 (131)
T PF13401_consen   79 LIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTPE  126 (131)
T ss_dssp             HHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESST
T ss_pred             HHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEEChh
Confidence            66555544 459999999654   23444433222  5677888887763

>PRK06893 DNA replication initiation factor; Validated

Probab=99.12  E-value=2.1e-09  Score=90.17  Aligned_cols=154  Identities=17%  Similarity=0.175  Sum_probs=95.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+|||+|+..+++.+..+...+.|+.    ....   ......                     ..+.+.
T Consensus        39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~----~~~~---~~~~~~---------------------~~~~~~   90 (229)
T PRK06893         39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP----LSKS---QYFSPA---------------------VLENLE   90 (229)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee----HHHh---hhhhHH---------------------HHhhcc
Confidence            467899999999999999999998776666667765    2110   000001                     111111


Q ss_pred             CceEEEEEecCCCh---hhHH-HHhcccCCC-CCCcEE-EEEeCchh---------HHHhcCCCeEEEecCCChhhhHHH
Q 020206           83 RKKVLIVFDDVNHP---RQIE-FLIGNLDWF-ASGSRI-LITARDKQ---------ALINCGVNKIYQIKELVHVDALKL  147 (329)
Q Consensus        83 ~~~~LlvlDdv~~~---~~~~-~l~~~l~~~-~~~~~i-litsr~~~---------~~~~~~~~~~~~l~~l~~~e~~~l  147 (329)
                       +.-+|++||++..   ..++ .+...+... ..+..+ |+|++..+         ....+.....+++++++.++..++
T Consensus        91 -~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~i  169 (229)
T PRK06893         91 -QQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIV  169 (229)
T ss_pred             -cCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHH
Confidence             2348999999642   2222 232222211 234455 45554422         111223445789999999999999


Q ss_pred             HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      +++.+....  ....+++.+.|++.+.|....+..+...+
T Consensus       170 L~~~a~~~~--l~l~~~v~~~L~~~~~~d~r~l~~~l~~l  207 (229)
T PRK06893        170 LQRNAYQRG--IELSDEVANFLLKRLDRDMHTLFDALDLL  207 (229)
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            998774332  22446778999999999988877766655

>PF13173 AAA_14: AAA domain

Probab=99.08  E-value=1.1e-09  Score=83.14  Aligned_cols=119  Identities=16%  Similarity=0.139  Sum_probs=76.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .++++|+|+.|+|||||++++++... ....++++. ......   . ....   .         +    ..+.+.+...
T Consensus         2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~-~~~~~~---~-~~~~---~---------~----~~~~~~~~~~   59 (128)
T PF13173_consen    2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYIN-FDDPRD---R-RLAD---P---------D----LLEYFLELIK   59 (128)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeec-cCCHHH---H-HHhh---h---------h----hHHHHHHhhc
Confidence            57899999999999999999998876 223444444 111100   0 0000   0         0    1122333333


Q ss_pred             CceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhc------CCCeEEEecCCChhh
Q 020206           83 RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINC------GVNKIYQIKELVHVD  143 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~------~~~~~~~l~~l~~~e  143 (329)
                      .++.+|+||++.....+...+..+.+..++.++++|++.......-      +....+.+.||+..|
T Consensus        60 ~~~~~i~iDEiq~~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E  126 (128)
T PF13173_consen   60 PGKKYIFIDEIQYLPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE  126 (128)
T ss_pred             cCCcEEEEehhhhhccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence            3678999999988888877777776656678999999887555321      233467888988776

>PF14516 AAA_35: AAA-like domain

Probab=99.03  E-value=5e-08  Score=86.30  Aligned_cols=261  Identities=10%  Similarity=0.126  Sum_probs=138.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh--cCChHHHHHHHHHHHhcCCCCCC-CC---------
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE--TGKLADLRKELLSTLLNDGNMNK-FP---------   70 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~-~~---------   70 (329)
                      ...+.|.||..+|||+|...+.+.....-...++++ ......  ......+++.++..+...-..+. ..         
T Consensus        31 G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id-~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~  109 (331)
T PF14516_consen   31 GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYID-LQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS  109 (331)
T ss_pred             CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEE-eecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence            467899999999999999999998876544444444 333322  23455555555554433221111 00         


Q ss_pred             -CcchHHHHhh-h--cCceEEEEEecCCCh----hhHHHHhcccC---CC---C---CCcEEEEEeCchhHH-H-----h
Q 020206           71 -NIGLNFQSKR-L--TRKKVLIVFDDVNHP----RQIEFLIGNLD---WF---A---SGSRILITARDKQAL-I-----N  127 (329)
Q Consensus        71 -~~~~~~l~~~-~--~~~~~LlvlDdv~~~----~~~~~l~~~l~---~~---~---~~~~ilitsr~~~~~-~-----~  127 (329)
                       ......+.+. +  .+++++|+||+++..    .....++..+.   ..   .   +..++++....+... .     .
T Consensus       110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~~~~~~SP  189 (331)
T PF14516_consen  110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYIILDINQSP  189 (331)
T ss_pred             hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccccCCCCCC
Confidence             0122222222 1  258999999999532    22223332221   10   0   122333333222111 1     1


Q ss_pred             cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCCh
Q 020206          128 CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQ  207 (329)
Q Consensus       128 ~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~  207 (329)
                      ++....+.|++|+.+|+..|+......  -    .+...+.|...++|+|..+..++..+.... ...+.++....... 
T Consensus       190 FNIg~~i~L~~Ft~~ev~~L~~~~~~~--~----~~~~~~~l~~~tgGhP~Lv~~~~~~l~~~~-~~~~~l~~~a~~~~-  261 (331)
T PF14516_consen  190 FNIGQPIELPDFTPEEVQELAQRYGLE--F----SQEQLEQLMDWTGGHPYLVQKACYLLVEEQ-ITLEQLLEEAITDN-  261 (331)
T ss_pred             cccccceeCCCCCHHHHHHHHHhhhcc--C----CHHHHHHHHHHHCCCHHHHHHHHHHHHHcc-CcHHHHHHHHHHhc-
Confidence            234568899999999999999876421  1    122299999999999999999999997642 12333333221111 


Q ss_pred             hhHHHHHHhhhcCC--ChhhHhHHHhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhccceeeecCCcee-ccHHHHH
Q 020206          208 MEIQEVLKISYDGL--DDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIR-MHDLMRN  284 (329)
Q Consensus       208 ~~~~~~l~~~~~~L--~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~-~H~lir~  284 (329)
                      .....-++.-+..|  .++.+..+..+-.-...             ..........|...|||... +|.+. -.++.|.
T Consensus       262 ~~~~~hL~~l~~~L~~~~~L~~~~~~il~~~~~-------------~~~~~~~~~~L~~~GLV~~~-~~~~~~~n~iY~~  327 (331)
T PF14516_consen  262 GIYNDHLDRLLDRLQQNPELLEAYQQILFSGEP-------------VDLDSDDIYKLESLGLVKRD-GNQLEVRNPIYRQ  327 (331)
T ss_pred             ccHHHHHHHHHHHHccCHHHHHHHHHHHhCCCC-------------cccChHHHHHHHHCCeEEEe-CCEEEEEcHHHHH
Confidence            11122333333444  23333333322111111             11122346789999999988 44443 3556666


Q ss_pred             HH
Q 020206          285 MG  286 (329)
Q Consensus       285 ~~  286 (329)
                      |-
T Consensus       328 yF  329 (331)
T PF14516_consen  328 YF  329 (331)
T ss_pred             Hh
Confidence            53

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=99.02  E-value=2e-08  Score=84.29  Aligned_cols=154  Identities=21%  Similarity=0.209  Sum_probs=92.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+|||+||+.+++.........+++. .......  .    ..+                     ...+.
T Consensus        38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~-~~~~~~~--~----~~~---------------------~~~~~   89 (226)
T TIGR03420        38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLP-LAELAQA--D----PEV---------------------LEGLE   89 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEe-HHHHHHh--H----HHH---------------------Hhhcc
Confidence            467899999999999999999988765444444444 1111100  0    011                     01111


Q ss_pred             CceEEEEEecCCChh---h-HHHHhcccCC-CCCCcEEEEEeCchhHH---------HhcCCCeEEEecCCChhhhHHHH
Q 020206           83 RKKVLIVFDDVNHPR---Q-IEFLIGNLDW-FASGSRILITARDKQAL---------INCGVNKIYQIKELVHVDALKLL  148 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~---~-~~~l~~~l~~-~~~~~~ilitsr~~~~~---------~~~~~~~~~~l~~l~~~e~~~ll  148 (329)
                      + .-+|||||++...   . ...+...+.. ...+..+|+||+.....         ..+.....+.+++++.++...++
T Consensus        90 ~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l  168 (226)
T TIGR03420        90 Q-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAAL  168 (226)
T ss_pred             c-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHH
Confidence            2 2389999995322   1 2233322211 12244788888754311         11222457899999999999999


Q ss_pred             hhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          149 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ........  ....++.++.|.+.+.|||..+..+...+
T Consensus       169 ~~~~~~~~--~~~~~~~l~~L~~~~~gn~r~L~~~l~~~  205 (226)
T TIGR03420       169 QSRAARRG--LQLPDEVADYLLRHGSRDMGSLMALLDAL  205 (226)
T ss_pred             HHHHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            87652221  12345778889999999999887776554

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>TIGR00678 holB DNA polymerase III, delta' subunit

Probab=99.01  E-value=2.9e-08  Score=80.73  Aligned_cols=148  Identities=16%  Similarity=0.136  Sum_probs=91.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC---------------------CCceEEEeccchhhhcCChHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR---------------------FEGSYFAHNVREAEETGKLADLRKELLSTLL   61 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   61 (329)
                      +..+.++|++|+|||++|+.++..+...                     ++...++...   ...... +-++.+...+.
T Consensus        14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~~~~-~~i~~i~~~~~   89 (188)
T TIGR00678        14 AHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQSIKV-DQVRELVEFLS   89 (188)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCcCCH-HHHHHHHHHHc
Confidence            3678999999999999999999886432                     1222222100   000111 11222222211


Q ss_pred             cCCCCCCCCCcchHHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEec
Q 020206           62 NDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIK  137 (329)
Q Consensus        62 ~~~~~~~~~~~~~~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~  137 (329)
                      ...                ..+.+-++|+||++.  ......++..+...++...+|+++++.. .... ......+.+.
T Consensus        90 ~~~----------------~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~  153 (188)
T TIGR00678        90 RTP----------------QESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFP  153 (188)
T ss_pred             cCc----------------ccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCC
Confidence            110                123456899999954  3446667777766556677777776542 2111 1344689999


Q ss_pred             CCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch
Q 020206          138 ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       138 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      +++.++..+++...  +      ..++.+..|++.++|+|.
T Consensus       154 ~~~~~~~~~~l~~~--g------i~~~~~~~i~~~~~g~~r  186 (188)
T TIGR00678       154 PLSEEALLQWLIRQ--G------ISEEAAELLLALAGGSPG  186 (188)
T ss_pred             CCCHHHHHHHHHHc--C------CCHHHHHHHHHHcCCCcc
Confidence            99999999999876  1      224669999999999986

At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=99.00  E-value=6.4e-08  Score=91.74  Aligned_cols=97  Identities=13%  Similarity=0.109  Sum_probs=68.2

Q ss_pred             ceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchhHHH-h-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQALI-N-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~~~~-~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.-++|||+++..  ..+..++..+.+...+.++|++|++..... . .+....+.++.++.++..+.+.+.+.....  
T Consensus       119 r~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI--  196 (830)
T PRK07003        119 RFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERI--  196 (830)
T ss_pred             CceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCC--
Confidence            4458999999643  447777777766566788888887753222 1 234568999999999999999887733221  


Q ss_pred             CchHHHHHHHHHHhcCCch-HHHH
Q 020206          160 ASYIELTHEAIKYAQGVPI-ALKI  182 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Pl-al~~  182 (329)
                      ...++.+..|++.++|... +|.+
T Consensus       197 ~id~eAL~lIA~~A~GsmRdALsL  220 (830)
T PRK07003        197 AFEPQALRLLARAAQGSMRDALSL  220 (830)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHH
Confidence            2345778999999999775 4444

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.99  E-value=5.8e-08  Score=87.14  Aligned_cols=99  Identities=10%  Similarity=0.024  Sum_probs=67.1

Q ss_pred             ceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.-++|+|+++..  .....++..+...++...+|++|.+.. .... .+....+++++++.++..+++...+....  .
T Consensus       119 ~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g--~  196 (363)
T PRK14961        119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKES--I  196 (363)
T ss_pred             CceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcC--C
Confidence            4459999999654  346667777665566777777765543 2211 23446899999999999999988663322  1


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ...++.+..|+..++|.|..+....
T Consensus       197 ~i~~~al~~ia~~s~G~~R~al~~l  221 (363)
T PRK14961        197 DTDEYALKLIAYHAHGSMRDALNLL  221 (363)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            2345668889999999997554444

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=98.97  E-value=1.3e-07  Score=86.90  Aligned_cols=166  Identities=14%  Similarity=0.155  Sum_probs=102.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC--CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      .-+.|+|++|+|||+|+..+++.+....  ..++++.          ..++...+...+....       .....+.+..
T Consensus       142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~----------~~~f~~~~~~~l~~~~-------~~~~~~~~~~  204 (450)
T PRK14087        142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS----------GDEFARKAVDILQKTH-------KEIEQFKNEI  204 (450)
T ss_pred             CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHHhh-------hHHHHHHHHh
Confidence            3478999999999999999998765432  2233333          3345555554443211       0122333333


Q ss_pred             cCceEEEEEecCCC----hhhHHHHhcccCCC-CCCcEEEEEeCchh-HHHh--------cCCCeEEEecCCChhhhHHH
Q 020206           82 TRKKVLIVFDDVNH----PRQIEFLIGNLDWF-ASGSRILITARDKQ-ALIN--------CGVNKIYQIKELVHVDALKL  147 (329)
Q Consensus        82 ~~~~~LlvlDdv~~----~~~~~~l~~~l~~~-~~~~~ilitsr~~~-~~~~--------~~~~~~~~l~~l~~~e~~~l  147 (329)
                      + ..-+||+||+..    ....+.+...+... ..+..+|+||...+ ....        +...-...+++++.++-.++
T Consensus       205 ~-~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~i  283 (450)
T PRK14087        205 C-QNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAI  283 (450)
T ss_pred             c-cCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHH
Confidence            3 334889999943    22233443333221 23446888876543 1111        22445678999999999999


Q ss_pred             HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      +.+.+..........++++..|++.+.|+|..+..+...+
T Consensus       284 L~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l  323 (450)
T PRK14087        284 IKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRL  323 (450)
T ss_pred             HHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence            9988733221113557889999999999999888776544

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=98.96  E-value=1.7e-08  Score=83.87  Aligned_cols=162  Identities=16%  Similarity=0.188  Sum_probs=97.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCC--ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      ..+.|+|++|+|||.|...+++.+.+..+  .++|+.          ..++...+...+...         ....+.+.+
T Consensus        35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~----------~~~f~~~~~~~~~~~---------~~~~~~~~~   95 (219)
T PF00308_consen   35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS----------AEEFIREFADALRDG---------EIEEFKDRL   95 (219)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE----------HHHHHHHHHHHHHTT---------SHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhccccccceeec----------HHHHHHHHHHHHHcc---------cchhhhhhh
Confidence            35789999999999999999998765433  344443          344555554444331         233444445


Q ss_pred             cCceEEEEEecCCCh---hh-HHHHhcccCC-CCCCcEEEEEeCchhHHH---------hcCCCeEEEecCCChhhhHHH
Q 020206           82 TRKKVLIVFDDVNHP---RQ-IEFLIGNLDW-FASGSRILITARDKQALI---------NCGVNKIYQIKELVHVDALKL  147 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~---~~-~~~l~~~l~~-~~~~~~ilitsr~~~~~~---------~~~~~~~~~l~~l~~~e~~~l  147 (329)
                      +.-. +|++||++..   .. .+.+...+.. ...|.++|+|+...+...         .+...-.+++++++.++-.++
T Consensus        96 ~~~D-lL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~i  174 (219)
T PF00308_consen   96 RSAD-LLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRI  174 (219)
T ss_dssp             CTSS-EEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHH
T ss_pred             hcCC-EEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHH
Confidence            4333 8999999532   21 2233322221 134668999996553211         123556899999999999999


Q ss_pred             HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      +++.+....-.  ..+++++.|++.+.++...|..+...+
T Consensus       175 l~~~a~~~~~~--l~~~v~~~l~~~~~~~~r~L~~~l~~l  212 (219)
T PF00308_consen  175 LQKKAKERGIE--LPEEVIEYLARRFRRDVRELEGALNRL  212 (219)
T ss_dssp             HHHHHHHTT----S-HHHHHHHHHHTTSSHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC--CcHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            99887332222  456778889999888887776665544

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.95  E-value=1.4e-07  Score=91.08  Aligned_cols=100  Identities=15%  Similarity=0.088  Sum_probs=71.0

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-++|||+++  +.+....|+..+...+...++|++|.+. .+... ......+.+.+++.++...++.+.+....  
T Consensus       118 gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~Eg--  195 (944)
T PRK14949        118 GRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQ--  195 (944)
T ss_pred             CCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence            456699999995  4566788888777656677776665544 33322 23457899999999999999988763321  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ....++.+..|+..++|.|..+..++
T Consensus       196 I~~edeAL~lIA~~S~Gd~R~ALnLL  221 (944)
T PRK14949        196 LPFEAEALTLLAKAANGSMRDALSLT  221 (944)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            23445679999999999997665554

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.92  E-value=1.8e-07  Score=86.90  Aligned_cols=171  Identities=12%  Similarity=0.059  Sum_probs=95.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc--CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh-
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR-   80 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-   80 (329)
                      ..+.++|++|+||||+|+.+++.+..  ..+..++.+............++.     .+....   ...-..+..+.+. 
T Consensus        37 ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~-----el~~~~---~~~vd~iR~l~~~~  108 (504)
T PRK14963         37 HAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVL-----EIDAAS---NNSVEDVRDLREKV  108 (504)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceE-----Eecccc---cCCHHHHHHHHHHH
Confidence            45799999999999999999987642  122234433111000000000000     000000   0000011111111 


Q ss_pred             ----hcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhh
Q 020206           81 ----LTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCA  152 (329)
Q Consensus        81 ----~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~  152 (329)
                          ..+++-++|+|+++.  ...+..++..+........+|+++... .+... ......+++.+++.++...++...+
T Consensus       109 ~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~  188 (504)
T PRK14963        109 LLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLL  188 (504)
T ss_pred             hhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHH
Confidence                123456899999964  345667776665544555666555443 22222 2345689999999999999998876


Q ss_pred             cCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          153 FGRDHPDASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       153 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      .....  ...++.+..|++.++|++.-+....
T Consensus       189 ~~egi--~i~~~Al~~ia~~s~GdlR~aln~L  218 (504)
T PRK14963        189 EAEGR--EAEPEALQLVARLADGAMRDAESLL  218 (504)
T ss_pred             HHcCC--CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            33222  1345678999999999997665443

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=98.92  E-value=1.7e-07  Score=83.51  Aligned_cols=99  Identities=11%  Similarity=0.021  Sum_probs=62.7

Q ss_pred             eEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCC
Q 020206           85 KVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDA  160 (329)
Q Consensus        85 ~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~  160 (329)
                      +-+||+||++..  .....+...+......+++|+|+.... .... ......+.+.+++.++...++...+.....  .
T Consensus       126 ~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~--~  203 (337)
T PRK12402        126 YKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGV--D  203 (337)
T ss_pred             CcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCC--C
Confidence            448999999643  223334333333345567777775432 1111 133457888999999999999887632222  1


Q ss_pred             chHHHHHHHHHHhcCCchHHHHHHh
Q 020206          161 SYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       161 ~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                      ..++.+..|++.++|++..+.....
T Consensus       204 ~~~~al~~l~~~~~gdlr~l~~~l~  228 (337)
T PRK12402        204 YDDDGLELIAYYAGGDLRKAILTLQ  228 (337)
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            3467799999999999877655443

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=98.92  E-value=2e-07  Score=86.34  Aligned_cols=100  Identities=13%  Similarity=0.115  Sum_probs=67.8

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEe-CchhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITA-RDKQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilits-r~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +++-++|+|+++.  ...+..++..+...++...+|++| +...+... ......+++.+++.++...++...+....  
T Consensus       127 ~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~eg--  204 (507)
T PRK06645        127 GKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQEN--  204 (507)
T ss_pred             CCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcC--
Confidence            3556899999964  455777777766555566666544 33333322 23446789999999999999998873322  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ....++.+..|++.++|.+.-+....
T Consensus       205 i~ie~eAL~~Ia~~s~GslR~al~~L  230 (507)
T PRK06645        205 LKTDIEALRIIAYKSEGSARDAVSIL  230 (507)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            22345678899999999987665444

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.92  E-value=1.6e-07  Score=88.11  Aligned_cols=99  Identities=16%  Similarity=0.110  Sum_probs=69.1

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHH--HhcCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQAL--INCGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~--~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-++|+|+++.  ......++..+...+++..+|++|.+....  ........+.+.+++.++....+...+....  
T Consensus       117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEg--  194 (702)
T PRK14960        117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQ--  194 (702)
T ss_pred             CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcC--
Confidence            4556899999964  356677777766556677788777664222  1124556899999999999999988773322  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKIL  183 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~  183 (329)
                      ....++.+..|++.++|.+..+...
T Consensus       195 I~id~eAL~~IA~~S~GdLRdALnL  219 (702)
T PRK14960        195 IAADQDAIWQIAESAQGSLRDALSL  219 (702)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHH
Confidence            2244567899999999988665544

>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]

Probab=98.91  E-value=1.5e-08  Score=87.05  Aligned_cols=153  Identities=17%  Similarity=0.252  Sum_probs=95.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+-+++|||+|+||||||+-++..-+..-  ..|+.    .+....-..-++.+..+...               ...+.
T Consensus       162 ipSmIlWGppG~GKTtlArlia~tsk~~S--yrfve----lSAt~a~t~dvR~ife~aq~---------------~~~l~  220 (554)
T KOG2028|consen  162 IPSMILWGPPGTGKTTLARLIASTSKKHS--YRFVE----LSATNAKTNDVRDIFEQAQN---------------EKSLT  220 (554)
T ss_pred             CCceEEecCCCCchHHHHHHHHhhcCCCc--eEEEE----EeccccchHHHHHHHHHHHH---------------HHhhh
Confidence            46789999999999999999988765543  23333    22212222222333333211               12355


Q ss_pred             CceEEEEEecC--CChhhHHHHhcccCCCCCCcEEEE--EeCchhHHH---hcCCCeEEEecCCChhhhHHHHhhhhc--
Q 020206           83 RKKVLIVFDDV--NHPRQIEFLIGNLDWFASGSRILI--TARDKQALI---NCGVNKIYQIKELVHVDALKLLNQCAF--  153 (329)
Q Consensus        83 ~~~~LlvlDdv--~~~~~~~~l~~~l~~~~~~~~ili--tsr~~~~~~---~~~~~~~~~l~~l~~~e~~~ll~~~~~--  153 (329)
                      +++++|++|+|  .+..+.+.|++.+   ..|..++|  ||.++....   ......++.|+.|..++...++.+-..  
T Consensus       221 krkTilFiDEiHRFNksQQD~fLP~V---E~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l  297 (554)
T KOG2028|consen  221 KRKTILFIDEIHRFNKSQQDTFLPHV---ENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASL  297 (554)
T ss_pred             cceeEEEeHHhhhhhhhhhhccccee---ccCceEEEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhh
Confidence            78999999999  4667777777765   35666666  555552211   124556889999999999999887321  


Q ss_pred             CC-C-------C-CCCchHHHHHHHHHHhcCCchH
Q 020206          154 GR-D-------H-PDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       154 ~~-~-------~-~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                      +. .       . .......+++.++..|+|-..+
T Consensus       298 ~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~  332 (554)
T KOG2028|consen  298 GDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA  332 (554)
T ss_pred             ccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence            11 1       1 1124567788899999996543

>PRK08727 hypothetical protein; Validated

Probab=98.91  E-value=3.8e-08  Score=82.71  Aligned_cols=153  Identities=19%  Similarity=0.080  Sum_probs=93.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      ..+.|+|++|+|||+|+..+++...++...+.|+.    ..      +....+..                 .+ +.+. 
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~----~~------~~~~~~~~-----------------~~-~~l~-   92 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP----LQ------AAAGRLRD-----------------AL-EALE-   92 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe----HH------HhhhhHHH-----------------HH-HHHh-
Confidence            35899999999999999999998776655566665    11      11111110                 01 1111 


Q ss_pred             ceEEEEEecCCC----hhhHHHHhcccCC-CCCCcEEEEEeCchhHHH-----h----cCCCeEEEecCCChhhhHHHHh
Q 020206           84 KKVLIVFDDVNH----PRQIEFLIGNLDW-FASGSRILITARDKQALI-----N----CGVNKIYQIKELVHVDALKLLN  149 (329)
Q Consensus        84 ~~~LlvlDdv~~----~~~~~~l~~~l~~-~~~~~~ilitsr~~~~~~-----~----~~~~~~~~l~~l~~~e~~~ll~  149 (329)
                      ..-+||+||++.    ......++..+.. ...+..+|+||+..+..-     .    +.....+.+++++.++-.+++.
T Consensus        93 ~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~  172 (233)
T PRK08727         93 GRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLR  172 (233)
T ss_pred             cCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHH
Confidence            223899999952    2222233332221 123567999998653211     1    1234688999999999999999


Q ss_pred             hhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          150 QCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      +++....  -...++.+..|++.+.|....+..+...+
T Consensus       173 ~~a~~~~--l~l~~e~~~~La~~~~rd~r~~l~~L~~l  208 (233)
T PRK08727        173 ERAQRRG--LALDEAAIDWLLTHGERELAGLVALLDRL  208 (233)
T ss_pred             HHHHHcC--CCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            8663322  22445778889999988777665544443

>PRK08084 DNA replication initiation factor; Provisional

Probab=98.88  E-value=6.2e-08  Score=81.55  Aligned_cols=154  Identities=16%  Similarity=0.153  Sum_probs=94.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+|||+|+..+++........+.|+.    .....   .....                     +.+...
T Consensus        45 ~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~----~~~~~---~~~~~---------------------~~~~~~   96 (235)
T PRK08084         45 SGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP----LDKRA---WFVPE---------------------VLEGME   96 (235)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE----HHHHh---hhhHH---------------------HHHHhh
Confidence            357899999999999999999987765544455554    21100   00000                     111111


Q ss_pred             CceEEEEEecCCCh---hhH-HHHhcccCCC-CC-CcEEEEEeCchhHHH---------hcCCCeEEEecCCChhhhHHH
Q 020206           83 RKKVLIVFDDVNHP---RQI-EFLIGNLDWF-AS-GSRILITARDKQALI---------NCGVNKIYQIKELVHVDALKL  147 (329)
Q Consensus        83 ~~~~LlvlDdv~~~---~~~-~~l~~~l~~~-~~-~~~ilitsr~~~~~~---------~~~~~~~~~l~~l~~~e~~~l  147 (329)
                      + --+|++||++..   ..+ +.+...+... .. +..+|+||+..+..-         -+.....+++++++.++-.++
T Consensus        97 ~-~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~  175 (235)
T PRK08084         97 Q-LSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQA  175 (235)
T ss_pred             h-CCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHH
Confidence            1 137999999432   222 2222222211 12 347889988653221         123446889999999999999


Q ss_pred             HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      +++.+....  -.-.+++.+.|++.+.|....+..+...+
T Consensus       176 l~~~a~~~~--~~l~~~v~~~L~~~~~~d~r~l~~~l~~l  213 (235)
T PRK08084        176 LQLRARLRG--FELPEDVGRFLLKRLDREMRTLFMTLDQL  213 (235)
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence            987653321  23456789999999999888777666555

>PRK13342 recombination factor protein RarA; Reviewed

Probab=98.88  E-value=8.9e-08  Score=87.51  Aligned_cols=157  Identities=18%  Similarity=0.246  Sum_probs=92.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+||||||+.+++.....|.   .+..   .  .....+ ++.+.....                .....
T Consensus        36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~---~l~a---~--~~~~~~-ir~ii~~~~----------------~~~~~   90 (413)
T PRK13342         36 LSSMILWGPPGTGKTTLARIIAGATDAPFE---ALSA---V--TSGVKD-LREVIEEAR----------------QRRSA   90 (413)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEE---EEec---c--cccHHH-HHHHHHHHH----------------Hhhhc
Confidence            346889999999999999999987654321   1110   0  011111 111211110                00123


Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEE--eCchhHH---HhcCCCeEEEecCCChhhhHHHHhhhhcCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILIT--ARDKQAL---INCGVNKIYQIKELVHVDALKLLNQCAFGR  155 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilit--sr~~~~~---~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~  155 (329)
                      +++.+|++|+++.  ....+.++..+.   .+..+++.  |.+....   ........+.+++++.++...++.+.....
T Consensus        91 g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~  167 (413)
T PRK13342         91 GRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDK  167 (413)
T ss_pred             CCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHh
Confidence            4678999999964  344555555543   24444442  3333211   112334678999999999999998865221


Q ss_pred             -CCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          156 -DHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       156 -~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                       .......++..+.|++.++|++..+..+....
T Consensus       168 ~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~  200 (413)
T PRK13342        168 ERGLVELDDEALDALARLANGDARRALNLLELA  200 (413)
T ss_pred             hcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence             11113446778899999999998776665544

>PRK09087 hypothetical protein; Validated

Probab=98.88  E-value=5.7e-08  Score=81.04  Aligned_cols=145  Identities=13%  Similarity=0.093  Sum_probs=89.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+|||+|++.++....     ..|+.    .      ..+...+...                     +.
T Consensus        44 ~~~l~l~G~~GsGKThLl~~~~~~~~-----~~~i~----~------~~~~~~~~~~---------------------~~   87 (226)
T PRK09087         44 SPVVVLAGPVGSGKTHLASIWREKSD-----ALLIH----P------NEIGSDAANA---------------------AA   87 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhcC-----CEEec----H------HHcchHHHHh---------------------hh
Confidence            45789999999999999999887632     22433    1      1111111111                     00


Q ss_pred             CceEEEEEecCCChh-hHHHHhcccCCC-CCCcEEEEEeCchhHH---------HhcCCCeEEEecCCChhhhHHHHhhh
Q 020206           83 RKKVLIVFDDVNHPR-QIEFLIGNLDWF-ASGSRILITARDKQAL---------INCGVNKIYQIKELVHVDALKLLNQC  151 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~-~~~~l~~~l~~~-~~~~~ilitsr~~~~~---------~~~~~~~~~~l~~l~~~e~~~ll~~~  151 (329)
                      +  -+|++||++... .-..+...+... ..+..+|+|++..+..         ..+.....+++++++.++-.+++++.
T Consensus        88 ~--~~l~iDDi~~~~~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~  165 (226)
T PRK09087         88 E--GPVLIEDIDAGGFDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL  165 (226)
T ss_pred             c--CeEEEECCCCCCCCHHHHHHHHHHHHhCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence            1  178889994321 112233332211 3467788888754221         11235568999999999999999988


Q ss_pred             hcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          152 AFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       152 ~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      +... . -...+++...|++.+.|....+..+...+
T Consensus       166 ~~~~-~-~~l~~ev~~~La~~~~r~~~~l~~~l~~L  199 (226)
T PRK09087        166 FADR-Q-LYVDPHVVYYLVSRMERSLFAAQTIVDRL  199 (226)
T ss_pred             HHHc-C-CCCCHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            7332 1 23456789999999999888777655544

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.88  E-value=3.1e-07  Score=86.01  Aligned_cols=100  Identities=11%  Similarity=0.082  Sum_probs=69.0

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-++|||+++  +......|+..+.+-..++.+|++|.+. .+... .+..+.+.++.++.++..+.+.+.+....  
T Consensus       123 gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Eg--  200 (700)
T PRK12323        123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEG--  200 (700)
T ss_pred             CCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcC--
Confidence            455699999996  4466788888877666677777666654 33222 23446789999999999999987763222  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ....++.++.|++.++|.|.....+.
T Consensus       201 i~~d~eAL~~IA~~A~Gs~RdALsLL  226 (700)
T PRK12323        201 IAHEVNALRLLAQAAQGSMRDALSLT  226 (700)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            12334668889999999997555443

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.87  E-value=3.3e-07  Score=84.24  Aligned_cols=158  Identities=14%  Similarity=0.096  Sum_probs=96.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC---------------------CCceEEEeccchhhhcCChHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR---------------------FEGSYFAHNVREAEETGKLADLRKELLSTLLN   62 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (329)
                      ..+.++|++|+||||+|+.+++.+.-.                     +..++.+.    ........+ ++.+......
T Consensus        36 ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eid----aas~~~vdd-IR~Iie~~~~  110 (491)
T PRK14964         36 QSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEID----AASNTSVDD-IKVILENSCY  110 (491)
T ss_pred             ceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEe----cccCCCHHH-HHHHHHHHHh
Confidence            478899999999999999999854211                     12222222    111112222 1122221111


Q ss_pred             CCCCCCCCCcchHHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecC
Q 020206           63 DGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKE  138 (329)
Q Consensus        63 ~~~~~~~~~~~~~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~  138 (329)
                      .+                ..++.-++|+|+++.  .+....++..+.+.++...+|++|.+. .+... ....+.+.+.+
T Consensus       111 ~P----------------~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~  174 (491)
T PRK14964        111 LP----------------ISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQK  174 (491)
T ss_pred             cc----------------ccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHHHHHHhheeeeccc
Confidence            00                123445899999953  455777777776656677777666443 32222 34557889999


Q ss_pred             CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ++.++....+...+....  ....++.+..|++.++|.+..+....
T Consensus       175 l~~~el~~~L~~ia~~Eg--i~i~~eAL~lIa~~s~GslR~alslL  218 (491)
T PRK14964        175 IPTDKLVEHLVDIAKKEN--IEHDEESLKLIAENSSGSMRNALFLL  218 (491)
T ss_pred             ccHHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            999999999988763322  22445778999999999987555444

>PRK05642 DNA replication initiation factor; Validated

Probab=98.86  E-value=6.7e-08  Score=81.24  Aligned_cols=153  Identities=22%  Similarity=0.240  Sum_probs=96.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +.+.|+|++|+|||.|++.+++.+..+...++|+.    .      .++....                  ..+.+.+.+
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~----~------~~~~~~~------------------~~~~~~~~~   97 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP----L------AELLDRG------------------PELLDNLEQ   97 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee----H------HHHHhhh------------------HHHHHhhhh
Confidence            56899999999999999999988766555566665    1      1121110                  112222222


Q ss_pred             ceEEEEEecCCC---hhh-HHHHhcccCCC-CCCcEEEEEeCchhHHHh---------cCCCeEEEecCCChhhhHHHHh
Q 020206           84 KKVLIVFDDVNH---PRQ-IEFLIGNLDWF-ASGSRILITARDKQALIN---------CGVNKIYQIKELVHVDALKLLN  149 (329)
Q Consensus        84 ~~~LlvlDdv~~---~~~-~~~l~~~l~~~-~~~~~ilitsr~~~~~~~---------~~~~~~~~l~~l~~~e~~~ll~  149 (329)
                      -. ++++||+..   ... -+.+...+... ..+..+|+|++..+..-.         +.....+.+++++.++-.++++
T Consensus        98 ~d-~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~  176 (234)
T PRK05642         98 YE-LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQ  176 (234)
T ss_pred             CC-EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHH
Confidence            22 688999942   122 23344333221 346678888876532211         1233578899999999999998


Q ss_pred             hhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          150 QCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      .++....  -...+++.+.|++.+.|....+..+...|
T Consensus       177 ~ka~~~~--~~l~~ev~~~L~~~~~~d~r~l~~~l~~l  212 (234)
T PRK05642        177 LRASRRG--LHLTDEVGHFILTRGTRSMSALFDLLERL  212 (234)
T ss_pred             HHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            6553321  22446789999999999888777766665

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=98.85  E-value=4e-07  Score=80.54  Aligned_cols=164  Identities=12%  Similarity=0.065  Sum_probs=92.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+|||++++.+++..........++. .. ....... +........+....+              ...
T Consensus        38 ~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~-~~-~~~~~~~-~~~~~~i~~~~~~~~--------------~~~  100 (319)
T PRK00440         38 MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLE-LN-ASDERGI-DVIRNKIKEFARTAP--------------VGG  100 (319)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEE-ec-cccccch-HHHHHHHHHHHhcCC--------------CCC
Confidence            355799999999999999999987643221111111 00 0011111 111111111111110              011


Q ss_pred             CceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ..+-++++|+++..  .....+...+......+.+|+++.... ... .......+++++++.++...++...+..... 
T Consensus       101 ~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~-  179 (319)
T PRK00440        101 APFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGI-  179 (319)
T ss_pred             CCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCC-
Confidence            23458999998543  333444444444445667777664431 111 1123346899999999999999887733221 


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                       ...++.+..+++.++|++.-+.....
T Consensus       180 -~i~~~al~~l~~~~~gd~r~~~~~l~  205 (319)
T PRK00440        180 -EITDDALEAIYYVSEGDMRKAINALQ  205 (319)
T ss_pred             -CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence             23467799999999999887555443

>PRK04195 replication factor C large subunit; Provisional

Probab=98.85  E-value=2.4e-07  Score=86.43  Aligned_cols=160  Identities=18%  Similarity=0.178  Sum_probs=94.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+||+|+||||+|..+++.+.  ++ .+.+.    .+.. ...+.+..+.........              ...
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~--~~-~ieln----asd~-r~~~~i~~~i~~~~~~~s--------------l~~   96 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYG--WE-VIELN----ASDQ-RTADVIERVAGEAATSGS--------------LFG   96 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEc----cccc-ccHHHHHHHHHHhhccCc--------------ccC
Confidence            57899999999999999999998863  22 11111    1111 112223333222211111              011


Q ss_pred             CceEEEEEecCCCh------hhHHHHhcccCCCCCCcEEEEEeCchh-H-H-HhcCCCeEEEecCCChhhhHHHHhhhhc
Q 020206           83 RKKVLIVFDDVNHP------RQIEFLIGNLDWFASGSRILITARDKQ-A-L-INCGVNKIYQIKELVHVDALKLLNQCAF  153 (329)
Q Consensus        83 ~~~~LlvlDdv~~~------~~~~~l~~~l~~~~~~~~ilitsr~~~-~-~-~~~~~~~~~~l~~l~~~e~~~ll~~~~~  153 (329)
                      .++-+||+|+++..      .....+...+.  ..+..+|+++.+.. . . ........+.+++++.++....+...+.
T Consensus        97 ~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~  174 (482)
T PRK04195         97 ARRKLILLDEVDGIHGNEDRGGARAILELIK--KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICR  174 (482)
T ss_pred             CCCeEEEEecCcccccccchhHHHHHHHHHH--cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHH
Confidence            25679999999643      22444544443  23445666664431 1 1 1123456789999999999999988773


Q ss_pred             CCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhc
Q 020206          154 GRDHPDASYIELTHEAIKYAQGVPIALKILGRFLF  188 (329)
Q Consensus       154 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~  188 (329)
                      .....  ..++++..|++.++|....+......+.
T Consensus       175 ~egi~--i~~eaL~~Ia~~s~GDlR~ain~Lq~~a  207 (482)
T PRK04195        175 KEGIE--CDDEALKEIAERSGGDLRSAINDLQAIA  207 (482)
T ss_pred             HcCCC--CCHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence            32222  3357799999999998887765554443

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.84  E-value=5.2e-07  Score=83.19  Aligned_cols=101  Identities=16%  Similarity=0.104  Sum_probs=64.3

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +++-++|+|+++.  ......++..+...++...+|++|.+. .+... ......+.+.+++.++....+...+....  
T Consensus       116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~eg--  193 (472)
T PRK14962        116 GKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEG--  193 (472)
T ss_pred             CCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcC--
Confidence            3556999999964  344566666665444455555555443 22221 23556889999999999999988763222  


Q ss_pred             CCchHHHHHHHHHHhcCCc-hHHHHHHh
Q 020206          159 DASYIELTHEAIKYAQGVP-IALKILGR  185 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~P-lal~~~~~  185 (329)
                      ....++++..|++.++|.. .++..+-.
T Consensus       194 i~i~~eal~~Ia~~s~GdlR~aln~Le~  221 (472)
T PRK14962        194 IEIDREALSFIAKRASGGLRDALTMLEQ  221 (472)
T ss_pred             CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            1244577899999887764 45554443

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.83  E-value=3e-07  Score=85.62  Aligned_cols=158  Identities=15%  Similarity=0.130  Sum_probs=95.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC---------------------CCceEEEeccchhhhcCChHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR---------------------FEGSYFAHNVREAEETGKLADLRKELLSTLLN   62 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (329)
                      ..+.++|++|+||||+|+.+++.+...                     ++.+..+.    ......+.++ +.+...+..
T Consensus        39 ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eid----aas~~~v~~i-R~l~~~~~~  113 (509)
T PRK14958         39 HAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVD----AASRTKVEDT-RELLDNIPY  113 (509)
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEc----ccccCCHHHH-HHHHHHHhh
Confidence            457899999999999999999875321                     11111111    0011112211 222222111


Q ss_pred             CCCCCCCCCcchHHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecC
Q 020206           63 DGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKE  138 (329)
Q Consensus        63 ~~~~~~~~~~~~~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~  138 (329)
                      .                -..++.-++|+|+++.  .+....++..+...+...++|++|.+. ..... .+....+.+++
T Consensus       114 ~----------------p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~kl~~tI~SRc~~~~f~~  177 (509)
T PRK14958        114 A----------------PTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQ  177 (509)
T ss_pred             c----------------cccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChHhchHHHHHHhhhhhcCC
Confidence            0                0123445899999963  456777777777666677777766544 22211 23445788999


Q ss_pred             CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ++.++....+...+.....  ...++.+..|++.++|.+..+....
T Consensus       178 l~~~~i~~~l~~il~~egi--~~~~~al~~ia~~s~GslR~al~lL  221 (509)
T PRK14958        178 LPPLQIAAHCQHLLKEENV--EFENAALDLLARAANGSVRDALSLL  221 (509)
T ss_pred             CCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence            9999999888777633221  2345668899999999987665544

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=98.83  E-value=5.9e-07  Score=83.15  Aligned_cols=162  Identities=15%  Similarity=0.101  Sum_probs=98.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      +-+.|+|++|+|||+|+..+++.+...++.  ++|+.          ..++...+...+...         ....+.+.+
T Consensus       149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~---------~~~~~~~~~  209 (450)
T PRK00149        149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVT----------SEKFTNDFVNALRNN---------TMEEFKEKY  209 (450)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHHcC---------cHHHHHHHH
Confidence            458999999999999999999988776533  33333          222333333332211         122333333


Q ss_pred             cCceEEEEEecCCCh----hhHHHHhcccCCC-CCCcEEEEEeCchhHH-H--------hcCCCeEEEecCCChhhhHHH
Q 020206           82 TRKKVLIVFDDVNHP----RQIEFLIGNLDWF-ASGSRILITARDKQAL-I--------NCGVNKIYQIKELVHVDALKL  147 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~----~~~~~l~~~l~~~-~~~~~ilitsr~~~~~-~--------~~~~~~~~~l~~l~~~e~~~l  147 (329)
                      + +.-+|+|||++..    ...+.++..+... ..+..+++||...+.. .        .+.....+.+++.+.++-.++
T Consensus       210 ~-~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~i  288 (450)
T PRK00149        210 R-SVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAI  288 (450)
T ss_pred             h-cCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHH
Confidence            3 3448999999431    1223343332211 2345577777654211 1        123345789999999999999


Q ss_pred             HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ++..+...  .....+++++.|++.+.|+...+.-+...+
T Consensus       289 l~~~~~~~--~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l  326 (450)
T PRK00149        289 LKKKAEEE--GIDLPDEVLEFIAKNITSNVRELEGALNRL  326 (450)
T ss_pred             HHHHHHHc--CCCCCHHHHHHHHcCcCCCHHHHHHHHHHH
Confidence            99887432  222446779999999999988766554444

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.81  E-value=3.9e-07  Score=83.01  Aligned_cols=100  Identities=9%  Similarity=-0.028  Sum_probs=68.8

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-++|+|+++  +.+....++..+........+|++|.+. .+... ....+.+.+.+++.++..+++...+....  
T Consensus       120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Eg--  197 (484)
T PRK14956        120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIEN--  197 (484)
T ss_pred             CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcC--
Confidence            455699999996  4456788877776545566666566543 22222 23446799999999999999988763322  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ....++++..|++.++|.+.-...+.
T Consensus       198 i~~e~eAL~~Ia~~S~Gd~RdAL~lL  223 (484)
T PRK14956        198 VQYDQEGLFWIAKKGDGSVRDMLSFM  223 (484)
T ss_pred             CCCCHHHHHHHHHHcCChHHHHHHHH
Confidence            22346779999999999996555444

>PLN03025 replication factor C subunit; Provisional

Probab=98.81  E-value=3.2e-07  Score=81.01  Aligned_cols=164  Identities=13%  Similarity=0.107  Sum_probs=92.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc-CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      .+-+.++||+|+||||+|..+++.+.. .+...+.-.+   .+..... +.++.....+......             ..
T Consensus        34 ~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln---~sd~~~~-~~vr~~i~~~~~~~~~-------------~~   96 (319)
T PLN03025         34 MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELN---ASDDRGI-DVVRNKIKMFAQKKVT-------------LP   96 (319)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeec---ccccccH-HHHHHHHHHHHhcccc-------------CC
Confidence            355789999999999999999987633 2322221111   1111111 2233332222111100             00


Q ss_pred             cCceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCC
Q 020206           82 TRKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDH  157 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~  157 (329)
                      .++.-++|+|+++..  .....+...+...+...++++++... ..... ......+++++++.++....+...+.....
T Consensus        97 ~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi  176 (319)
T PLN03025         97 PGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKV  176 (319)
T ss_pred             CCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCC
Confidence            134569999999643  33344443333334556677666443 22111 123357889999999999999887633221


Q ss_pred             CCCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          158 PDASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       158 ~~~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                        ...++.+..|++.++|....+.....
T Consensus       177 --~i~~~~l~~i~~~~~gDlR~aln~Lq  202 (319)
T PLN03025        177 --PYVPEGLEAIIFTADGDMRQALNNLQ  202 (319)
T ss_pred             --CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence              23356789999999998866554443

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=98.81  E-value=1.6e-07  Score=78.85  Aligned_cols=150  Identities=18%  Similarity=0.177  Sum_probs=90.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+|||+||..+++.....-....++. ....         ...+                      ... 
T Consensus        42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~-~~~~---------~~~~----------------------~~~-   88 (227)
T PRK08903         42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD-AASP---------LLAF----------------------DFD-   88 (227)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-hHHh---------HHHH----------------------hhc-
Confidence            357899999999999999999987654433444443 1110         0000                      001 


Q ss_pred             CceEEEEEecCCCh--hhHHHHhcccCCC-CCCc-EEEEEeCchhHHH--------hcCCCeEEEecCCChhhhHHHHhh
Q 020206           83 RKKVLIVFDDVNHP--RQIEFLIGNLDWF-ASGS-RILITARDKQALI--------NCGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        83 ~~~~LlvlDdv~~~--~~~~~l~~~l~~~-~~~~-~ilitsr~~~~~~--------~~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                      ...-+|++||++..  .....+...+... ..+. .+++|++..+...        .+.....+.+++++.++-..++.+
T Consensus        89 ~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~  168 (227)
T PRK08903         89 PEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKA  168 (227)
T ss_pred             ccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHH
Confidence            12337999999532  2223333333211 1233 4666666432111        112346889999999887788776


Q ss_pred             hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ......  ....+++.+.|++.+.||+..+..+...+
T Consensus       169 ~~~~~~--v~l~~~al~~L~~~~~gn~~~l~~~l~~l  203 (227)
T PRK08903        169 AAAERG--LQLADEVPDYLLTHFRRDMPSLMALLDAL  203 (227)
T ss_pred             HHHHcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            542222  22445779999999999999888877766

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=5.9e-07  Score=80.07  Aligned_cols=255  Identities=16%  Similarity=0.098  Sum_probs=140.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC-CcchHHHHhhh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP-NIGLNFQSKRL   81 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~l~~~~   81 (329)
                      -+.|+|++|+|||+.++.+++.+.+..+.  ++++.    +........++..++..+...... +.. ......+.+.+
T Consensus        44 n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yIN----c~~~~t~~~i~~~i~~~~~~~p~~-g~~~~~~~~~l~~~~  118 (366)
T COG1474          44 NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYIN----CLELRTPYQVLSKILNKLGKVPLT-GDSSLEILKRLYDNL  118 (366)
T ss_pred             cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEe----eeeCCCHHHHHHHHHHHcCCCCCC-CCchHHHHHHHHHHH
Confidence            38899999999999999999988766444  45655    555677888888888888633322 222 22444444444


Q ss_pred             c--CceEEEEEecCCChhhH--HHHhcccCCCCC-CcE--EEEEeCchhHHHhcC-------CCeEEEecCCChhhhHHH
Q 020206           82 T--RKKVLIVFDDVNHPRQI--EFLIGNLDWFAS-GSR--ILITARDKQALINCG-------VNKIYQIKELVHVDALKL  147 (329)
Q Consensus        82 ~--~~~~LlvlDdv~~~~~~--~~l~~~l~~~~~-~~~--ilitsr~~~~~~~~~-------~~~~~~l~~l~~~e~~~l  147 (329)
                      .  ++.+++|||+++....-  +.+...+..... ..+  +|..+.+......+.       ....+..++.+.+|...+
T Consensus       119 ~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~I  198 (366)
T COG1474         119 SKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDI  198 (366)
T ss_pred             HhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHH
Confidence            3  47899999999533211  222222221111 232  333444432222211       223578999999999999


Q ss_pred             HhhhhcCCC---CCCCchHHHHHHHHHHhcCCc-hHHHHH--HhhhcCC------CHHHHHHHHHhhccCChhhHHHHHH
Q 020206          148 LNQCAFGRD---HPDASYIELTHEAIKYAQGVP-IALKIL--GRFLFRK------RKEVWENAISKLEMVPQMEIQEVLK  215 (329)
Q Consensus       148 l~~~~~~~~---~~~~~~~~~~~~i~~~~~g~P-lal~~~--~~~l~~~------~~~~~~~~~~~l~~~~~~~~~~~l~  215 (329)
                      +..++....   ..++..-+.+..++...+|-. .||..+  |+.+.+.      ..+......       ...-.....
T Consensus       199 l~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~-------~~~~~~~~~  271 (366)
T COG1474         199 LRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQ-------EEIERDVLE  271 (366)
T ss_pred             HHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHH-------HHhhHHHHH
Confidence            999874332   222333333444445555422 222222  1222110      111111110       111123455


Q ss_pred             hhhcCCChhhHhHHHhhhcccCccChhH----HHHHHHhCCc---chhhhHHHHhhccceeee
Q 020206          216 ISYDGLDDKEKNIFLDIACFLVGEDRDI----VTKYLNACEF---FATSGIEVLVDKSLITIS  271 (329)
Q Consensus       216 ~~~~~L~~~~~~~l~~ls~~~~~~~~~~----l~~~~~~~~~---~~~~~l~~L~~~~Ll~~~  271 (329)
                      ..+..|+.+.+-.+........+++...    ...++.....   ...+.+..|...|+|...
T Consensus       272 ~~~~~L~~~~ki~L~~i~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~~~ii~~L~~lgiv~~~  334 (366)
T COG1474         272 EVLKTLPLHQKIVLLAIVELTVEISTGELYDVYESLCERLRTSQRRFSDIISELEGLGIVSAS  334 (366)
T ss_pred             HHHHcCCHhHHHHHHHHHHhcCCCChHHHHHHHHHHHhhhCchHHHHHHHHHHHHhcCeEEee
Confidence            6688999998888777665533444333    3333333333   233578889999998743

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.81  E-value=6.3e-07  Score=83.61  Aligned_cols=100  Identities=12%  Similarity=0.047  Sum_probs=67.6

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +++-++|+|+++  +......++..+...+....+|++|.+. ..... ......+++.+++.++....+...+....  
T Consensus       118 g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~eg--  195 (546)
T PRK14957        118 GRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKEN--  195 (546)
T ss_pred             CCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcC--
Confidence            455699999996  4455777777776655666666655443 22222 23457899999999999988887653222  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ....++.+..|++.++|.+.-+..+.
T Consensus       196 i~~e~~Al~~Ia~~s~GdlR~alnlL  221 (546)
T PRK14957        196 INSDEQSLEYIAYHAKGSLRDALSLL  221 (546)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            22445678899999999886443333

>PRK05564 DNA polymerase III subunit delta'; Validated

Probab=98.80  E-value=5.1e-07  Score=79.55  Aligned_cols=154  Identities=14%  Similarity=0.188  Sum_probs=95.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc-----CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR-----RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ   77 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l   77 (329)
                      +.+..++|+.|+|||++|..+++.+..     .++....+....  ........ ++++...+...+             
T Consensus        26 ~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~--~~~i~v~~-ir~~~~~~~~~p-------------   89 (313)
T PRK05564         26 SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPIN--KKSIGVDD-IRNIIEEVNKKP-------------   89 (313)
T ss_pred             CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecccc--CCCCCHHH-HHHHHHHHhcCc-------------
Confidence            457789999999999999999997532     233332222100  01122222 223333222111             


Q ss_pred             HhhhcCceEEEEEecC--CChhhHHHHhcccCCCCCCcEEEEEeCchhHH-Hh-cCCCeEEEecCCChhhhHHHHhhhhc
Q 020206           78 SKRLTRKKVLIVFDDV--NHPRQIEFLIGNLDWFASGSRILITARDKQAL-IN-CGVNKIYQIKELVHVDALKLLNQCAF  153 (329)
Q Consensus        78 ~~~~~~~~~LlvlDdv--~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~~-~~~~~~~~l~~l~~~e~~~ll~~~~~  153 (329)
                         ..+++-++|+|++  .+.+....++..+.+.++++.+|++|.+.... .. ....+.+.+.++++++...++.+...
T Consensus        90 ---~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~~~  166 (313)
T PRK05564         90 ---YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYKYN  166 (313)
T ss_pred             ---ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHHhc
Confidence               1133446777776  46667888888888777788888887665322 11 23456889999999999999876641


Q ss_pred             CCCCCCCchHHHHHHHHHHhcCCchHHH
Q 020206          154 GRDHPDASYIELTHEAIKYAQGVPIALK  181 (329)
Q Consensus       154 ~~~~~~~~~~~~~~~i~~~~~g~Plal~  181 (329)
                       .     ..++.++.++..++|.|.-+.
T Consensus       167 -~-----~~~~~~~~l~~~~~g~~~~a~  188 (313)
T PRK05564        167 -D-----IKEEEKKSAIAFSDGIPGKVE  188 (313)
T ss_pred             -C-----CCHHHHHHHHHHcCCCHHHHH
Confidence             1     123447788999999987554

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.80  E-value=7.9e-07  Score=84.07  Aligned_cols=99  Identities=10%  Similarity=0.098  Sum_probs=68.5

Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.-++|||+++  +......++..+.+.+....+|++|.+. .+.. .......+.+++++.++..+.+...+.....  
T Consensus       124 ~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi--  201 (618)
T PRK14951        124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENV--  201 (618)
T ss_pred             CceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCC--
Confidence            34589999996  4456777887777656666777666443 2222 2345578999999999999999887632221  


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ...++.+..|++.++|.+..+..+.
T Consensus       202 ~ie~~AL~~La~~s~GslR~al~lL  226 (618)
T PRK14951        202 PAEPQALRLLARAARGSMRDALSLT  226 (618)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            2345678999999999887665553

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=98.80  E-value=1.4e-06  Score=81.61  Aligned_cols=161  Identities=12%  Similarity=0.107  Sum_probs=97.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCC--CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .++|+|.+|+|||.|+..+++.....+  ..++|+.          ..++...+...+...         ....+.+...
T Consensus       316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit----------aeef~~el~~al~~~---------~~~~f~~~y~  376 (617)
T PRK14086        316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS----------SEEFTNEFINSIRDG---------KGDSFRRRYR  376 (617)
T ss_pred             cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHhc---------cHHHHHHHhh
Confidence            489999999999999999999876543  2334443          233333333332211         1222333333


Q ss_pred             CceEEEEEecCCC----hhhHHHHhcccCCC-CCCcEEEEEeCchhHH---------HhcCCCeEEEecCCChhhhHHHH
Q 020206           83 RKKVLIVFDDVNH----PRQIEFLIGNLDWF-ASGSRILITARDKQAL---------INCGVNKIYQIKELVHVDALKLL  148 (329)
Q Consensus        83 ~~~~LlvlDdv~~----~~~~~~l~~~l~~~-~~~~~ilitsr~~~~~---------~~~~~~~~~~l~~l~~~e~~~ll  148 (329)
                      + .-+|+|||++.    ...-+.|+..+... ..+..|||||...+..         .-+...-.+.|...+.+.-.+++
T Consensus       377 ~-~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL  455 (617)
T PRK14086        377 E-MDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAIL  455 (617)
T ss_pred             c-CCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHH
Confidence            3 24888999942    22123333333221 2355688888764211         11234567899999999999999


Q ss_pred             hhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          149 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ++.+....  ....++++..|++.+.++...|.-+...|
T Consensus       456 ~kka~~r~--l~l~~eVi~yLa~r~~rnvR~LegaL~rL  492 (617)
T PRK14086        456 RKKAVQEQ--LNAPPEVLEFIASRISRNIRELEGALIRV  492 (617)
T ss_pred             HHHHHhcC--CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            98873322  22446789999999998877766655444

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=98.79  E-value=3.5e-07  Score=86.50  Aligned_cols=100  Identities=10%  Similarity=0.038  Sum_probs=67.3

Q ss_pred             CceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-++|||+++..  .....++..+.......++|++|.+.. +... .+....+.+.+++.++....+.+.+..... 
T Consensus       118 gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi-  196 (709)
T PRK08691        118 GKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKI-  196 (709)
T ss_pred             CCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCC-
Confidence            34568999999643  346666666655456677777775442 1111 123346788899999999999887733222 


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                       ...++.+..|++.++|.+.-+..+.
T Consensus       197 -~id~eAL~~Ia~~A~GslRdAlnLL  221 (709)
T PRK08691        197 -AYEPPALQLLGRAAAGSMRDALSLL  221 (709)
T ss_pred             -CcCHHHHHHHHHHhCCCHHHHHHHH
Confidence             2345678999999999997666555

>PRK07471 DNA polymerase III subunit delta'; Validated

Probab=98.77  E-value=1.1e-06  Score=78.42  Aligned_cols=96  Identities=14%  Similarity=0.103  Sum_probs=65.6

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +.+.++|+|+++  +......++..+...+.+..+|++|.+.. .... ....+.+.+.+++.+++.+++..... . .+
T Consensus       140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~~-~-~~  217 (365)
T PRK07471        140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAGP-D-LP  217 (365)
T ss_pred             CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhcc-c-CC
Confidence            456799999995  45667777777765555666777776653 2222 24557899999999999999987641 1 11


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                          .+....++..++|+|+....+.
T Consensus       218 ----~~~~~~l~~~s~Gsp~~Al~ll  239 (365)
T PRK07471        218 ----DDPRAALAALAEGSVGRALRLA  239 (365)
T ss_pred             ----HHHHHHHHHHcCCCHHHHHHHh
Confidence                1224678999999998554443

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=98.76  E-value=1.6e-06  Score=77.94  Aligned_cols=101  Identities=12%  Similarity=0.030  Sum_probs=67.3

Q ss_pred             ceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      .+-++|+|+++..  .....++..+...++...+|++|.+.. .... ......++++++++++..+++...+.....  
T Consensus       117 ~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~--  194 (355)
T TIGR02397       117 KYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGI--  194 (355)
T ss_pred             CceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCC--
Confidence            4458999998543  456667766655455666667765543 2222 234467889999999999999887633221  


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                      ...++.+..+++.++|.|..+......
T Consensus       195 ~i~~~a~~~l~~~~~g~~~~a~~~lek  221 (355)
T TIGR02397       195 KIEDEALELIARAADGSLRDALSLLDQ  221 (355)
T ss_pred             CCCHHHHHHHHHHcCCChHHHHHHHHH
Confidence            233567889999999999877665543

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>PRK09112 DNA polymerase III subunit delta'; Validated

Probab=98.75  E-value=7.3e-07  Score=79.17  Aligned_cols=97  Identities=12%  Similarity=0.127  Sum_probs=64.4

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHhc-CCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALINC-GVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-++|+|+++  +......++..+...+.+..+|++|... ...... .....+.+.+++.++..+++...... .. 
T Consensus       140 g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~-~~-  217 (351)
T PRK09112        140 GNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSS-QG-  217 (351)
T ss_pred             CCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcc-cC-
Confidence            455699999995  4555667777776545556555555443 222222 34468999999999999999875421 11 


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKIL  183 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~  183 (329)
                        ..++.+..+++.++|+|.....+
T Consensus       218 --~~~~~~~~i~~~s~G~pr~Al~l  240 (351)
T PRK09112        218 --SDGEITEALLQRSKGSVRKALLL  240 (351)
T ss_pred             --CCHHHHHHHHHHcCCCHHHHHHH
Confidence              22455788999999999855443

>PRK07940 DNA polymerase III subunit delta'; Validated

Probab=98.74  E-value=7.2e-07  Score=80.32  Aligned_cols=92  Identities=14%  Similarity=0.115  Sum_probs=61.4

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +++-++|+|+++.  ......++..+...+++..+|++|.+. .+.+. .+..+.+.+++++.++..+++.+.. +    
T Consensus       116 ~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~~-~----  190 (394)
T PRK07940        116 GRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRRD-G----  190 (394)
T ss_pred             CCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHhc-C----
Confidence            3445888899953  445566777666555666666666654 33322 2345789999999999999887542 1    


Q ss_pred             CCchHHHHHHHHHHhcCCchHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALK  181 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~  181 (329)
                        ..++.+..++..++|.|..-.
T Consensus       191 --~~~~~a~~la~~s~G~~~~A~  211 (394)
T PRK07940        191 --VDPETARRAARASQGHIGRAR  211 (394)
T ss_pred             --CCHHHHHHHHHHcCCCHHHHH
Confidence              113447889999999996443

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=98.71  E-value=4.4e-07  Score=83.33  Aligned_cols=162  Identities=15%  Similarity=0.120  Sum_probs=97.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      -+.|+|++|+|||+|+..+++.+.+.++.  ++|+.          ..++...+...+...         ....+.+...
T Consensus       132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~----------~~~f~~~~~~~~~~~---------~~~~f~~~~~  192 (440)
T PRK14088        132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG---------KLNEFREKYR  192 (440)
T ss_pred             eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE----------HHHHHHHHHHHHhcc---------cHHHHHHHHH
Confidence            48999999999999999999987765432  34433          233444444443221         1122333333


Q ss_pred             CceEEEEEecCCCh---h-hHHHHhcccCCC-CCCcEEEEEeC-chhHHHh--------cCCCeEEEecCCChhhhHHHH
Q 020206           83 RKKVLIVFDDVNHP---R-QIEFLIGNLDWF-ASGSRILITAR-DKQALIN--------CGVNKIYQIKELVHVDALKLL  148 (329)
Q Consensus        83 ~~~~LlvlDdv~~~---~-~~~~l~~~l~~~-~~~~~ilitsr-~~~~~~~--------~~~~~~~~l~~l~~~e~~~ll  148 (329)
                      ...-+|++||++..   . .-..++..+... ..+..+|+||. .+.....        +.....+.+++.+.+.-..++
T Consensus       193 ~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL  272 (440)
T PRK14088        193 KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIA  272 (440)
T ss_pred             hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHH
Confidence            34458999999532   1 112333332211 23456888775 3322211        123447789999999999999


Q ss_pred             hhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          149 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ++.+....  ....++++..|++.+.|+...|.-+...+
T Consensus       273 ~~~~~~~~--~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l  309 (440)
T PRK14088        273 RKMLEIEH--GELPEEVLNFVAENVDDNLRRLRGAIIKL  309 (440)
T ss_pred             HHHHHhcC--CCCCHHHHHHHHhccccCHHHHHHHHHHH
Confidence            88873222  22446789999999999887776665444

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=98.71  E-value=4.2e-07  Score=83.01  Aligned_cols=162  Identities=17%  Similarity=0.134  Sum_probs=96.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCC--ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      ..+.|+|++|+|||+|++.+++.+.+..+  .++|+.          ..++...+...+...         ....+.+.+
T Consensus       137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~----------~~~~~~~~~~~~~~~---------~~~~~~~~~  197 (405)
T TIGR00362       137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS----------SEKFTNDFVNALRNN---------KMEEFKEKY  197 (405)
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE----------HHHHHHHHHHHHHcC---------CHHHHHHHH
Confidence            35789999999999999999998776543  233433          223333333333221         122233333


Q ss_pred             cCceEEEEEecCCCh----hhHHHHhcccCCC-CCCcEEEEEeCchhH-HHh--------cCCCeEEEecCCChhhhHHH
Q 020206           82 TRKKVLIVFDDVNHP----RQIEFLIGNLDWF-ASGSRILITARDKQA-LIN--------CGVNKIYQIKELVHVDALKL  147 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~----~~~~~l~~~l~~~-~~~~~ilitsr~~~~-~~~--------~~~~~~~~l~~l~~~e~~~l  147 (329)
                      .+ .-+|+|||++..    ...+.++..+... ..+..+|+|+...+. ...        +.....+.+++.+.++-..+
T Consensus       198 ~~-~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~i  276 (405)
T TIGR00362       198 RS-VDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAI  276 (405)
T ss_pred             Hh-CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHH
Confidence            32 338999999532    1223333333211 235567887765321 111        12334688999999999999


Q ss_pred             HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      +.+.+....  ....++++..|++.+.|++..+.-+...+
T Consensus       277 l~~~~~~~~--~~l~~e~l~~ia~~~~~~~r~l~~~l~~l  314 (405)
T TIGR00362       277 LQKKAEEEG--LELPDEVLEFIAKNIRSNVRELEGALNRL  314 (405)
T ss_pred             HHHHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            998874322  22346779999999999988766555444

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=98.70  E-value=9.3e-07  Score=81.05  Aligned_cols=157  Identities=12%  Similarity=0.052  Sum_probs=92.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      .-+.|+|++|+|||+|++.+++.+......++++.          ...+...+...+...         ....+..... 
T Consensus       142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~----------~~~f~~~~~~~l~~~---------~~~~f~~~~~-  201 (445)
T PRK12422        142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVR----------SELFTEHLVSAIRSG---------EMQRFRQFYR-  201 (445)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEee----------HHHHHHHHHHHHhcc---------hHHHHHHHcc-
Confidence            35789999999999999999998765544455544          223333333333211         1223333333 


Q ss_pred             ceEEEEEecCCCh----hhHHHHhcccCCC-CCCcEEEEEeCchh-HHHh--------cCCCeEEEecCCChhhhHHHHh
Q 020206           84 KKVLIVFDDVNHP----RQIEFLIGNLDWF-ASGSRILITARDKQ-ALIN--------CGVNKIYQIKELVHVDALKLLN  149 (329)
Q Consensus        84 ~~~LlvlDdv~~~----~~~~~l~~~l~~~-~~~~~ilitsr~~~-~~~~--------~~~~~~~~l~~l~~~e~~~ll~  149 (329)
                      ..-+|++||++..    ...+.+...+... ..+..+|+||...+ ....        +.....+.+.+++.++-..++.
T Consensus       202 ~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~  281 (445)
T PRK12422        202 NVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLE  281 (445)
T ss_pred             cCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHH
Confidence            3348889998432    2223333332211 23556888885532 1111        2234678899999999999998


Q ss_pred             hhhcCCCCCCCchHHHHHHHHHHhcCCchHHHH
Q 020206          150 QCAFGRDHPDASYIELTHEAIKYAQGVPIALKI  182 (329)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~  182 (329)
                      +.+....  ....++++..|+..+.++-..+.-
T Consensus       282 ~k~~~~~--~~l~~evl~~la~~~~~dir~L~g  312 (445)
T PRK12422        282 RKAEALS--IRIEETALDFLIEALSSNVKSLLH  312 (445)
T ss_pred             HHHHHcC--CCCCHHHHHHHHHhcCCCHHHHHH
Confidence            8773322  234467788888888877644443

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=98.69  E-value=5.6e-07  Score=85.28  Aligned_cols=100  Identities=13%  Similarity=0.067  Sum_probs=69.6

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-++|||+++  +......++..+.+-+...++|++|.+.. +... ......+.+++++.++....+...+....  
T Consensus       118 g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~--  195 (647)
T PRK07994        118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQ--  195 (647)
T ss_pred             CCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcC--
Confidence            455699999995  45667888887776566777766665542 2222 23457899999999999999988762222  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ....++.+..|+..++|.+.....+.
T Consensus       196 i~~e~~aL~~Ia~~s~Gs~R~Al~ll  221 (647)
T PRK07994        196 IPFEPRALQLLARAADGSMRDALSLT  221 (647)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            12345668889999999988555544

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=98.68  E-value=4.1e-06  Score=82.05  Aligned_cols=100  Identities=7%  Similarity=0.039  Sum_probs=68.3

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-++|||+++  +.+....|+..+.+....+.+|++|.+. .+... .+..+.+.+..++.++..+++.+.+..... 
T Consensus       119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv-  197 (824)
T PRK07764        119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGV-  197 (824)
T ss_pred             CCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCC-
Confidence            344588999996  4456777777777666777777666443 33322 245578999999999999999887632221 


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                       ...++.+..|++.++|.+..+....
T Consensus       198 -~id~eal~lLa~~sgGdlR~Al~eL  222 (824)
T PRK07764        198 -PVEPGVLPLVIRAGGGSVRDSLSVL  222 (824)
T ss_pred             -CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence             2345668889999999996554444

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.67  E-value=4.1e-06  Score=78.98  Aligned_cols=99  Identities=9%  Similarity=0.047  Sum_probs=67.5

Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.-++|+|+++  +.+....|+..+...+....+|++|.+. .+... ......+++.+++.++..+++...+.....  
T Consensus       118 ~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi--  195 (584)
T PRK14952        118 RYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGV--  195 (584)
T ss_pred             CceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCC--
Confidence            44589999995  4556777777777666677766655443 33322 234578999999999999999887633221  


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ...++.+..|++.++|.+..+..+.
T Consensus       196 ~i~~~al~~Ia~~s~GdlR~aln~L  220 (584)
T PRK14952        196 VVDDAVYPLVIRAGGGSPRDTLSVL  220 (584)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            2335668889999999986444443

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.66  E-value=1.4e-06  Score=81.60  Aligned_cols=100  Identities=10%  Similarity=0.040  Sum_probs=66.3

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +++-++|+|+++.  .+....++..+...+....+|++|.+.. .... ......+.+++++.++....+.+.+....  
T Consensus       118 ~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~eg--  195 (527)
T PRK14969        118 GRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQEN--  195 (527)
T ss_pred             CCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcC--
Confidence            4556999999964  3456777777766556677766665432 2211 12345788999999999998887663222  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ....++.+..|++.++|.+..+..+.
T Consensus       196 i~~~~~al~~la~~s~Gslr~al~ll  221 (527)
T PRK14969        196 IPFDATALQLLARAAAGSMRDALSLL  221 (527)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            12345668899999999887444443

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.66  E-value=3.5e-07  Score=70.80  Aligned_cols=36  Identities=25%  Similarity=0.309  Sum_probs=28.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+.+.|+|++|+|||++++.+++.+......++++.
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   54 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLN   54 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEe
Confidence            568999999999999999999998754434444544

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK05896 DNA polymerase III subunits gamma and tau; Validated

Probab=98.66  E-value=2.4e-06  Score=80.05  Aligned_cols=99  Identities=11%  Similarity=0.042  Sum_probs=64.5

Q ss_pred             EEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCCc
Q 020206           86 VLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDAS  161 (329)
Q Consensus        86 ~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~  161 (329)
                      -++|+|+++.  .+....++..+...+....+|++|... .+... ....+.+++.+++.++....+...+....  ...
T Consensus       121 KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~keg--i~I  198 (605)
T PRK05896        121 KVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEK--IKI  198 (605)
T ss_pred             EEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcC--CCC
Confidence            3699999954  455666766665545566666555443 23222 23456889999999999999988763221  123


Q ss_pred             hHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          162 YIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       162 ~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                      .++.+..+++.++|.+..+......
T Consensus       199 s~eal~~La~lS~GdlR~AlnlLek  223 (605)
T PRK05896        199 EDNAIDKIADLADGSLRDGLSILDQ  223 (605)
T ss_pred             CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            3566889999999988755444443

>PRK14950 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.66  E-value=3.8e-06  Score=80.05  Aligned_cols=102  Identities=11%  Similarity=0.060  Sum_probs=68.0

Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      .+-++|+|+++  +.+....|+..+........+|+++.+. ..... .+....+.+..++..+....+...+.....  
T Consensus       120 ~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl--  197 (585)
T PRK14950        120 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGI--  197 (585)
T ss_pred             CeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCC--
Confidence            45689999995  3455777777766555566666666443 22221 234457889999999999988877633221  


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ...++.+..|+..++|++..+......+
T Consensus       198 ~i~~eal~~La~~s~Gdlr~al~~LekL  225 (585)
T PRK14950        198 NLEPGALEAIARAATGSMRDAENLLQQL  225 (585)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            2345678899999999998666655443

>PRK14953 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.66  E-value=6.5e-06  Score=76.35  Aligned_cols=102  Identities=7%  Similarity=-0.018  Sum_probs=67.4

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +++-++|+|+++.  ......++..+...++...+|++|.+. ..... ......+.+.+++.++...++...+..... 
T Consensus       118 ~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi-  196 (486)
T PRK14953        118 GKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKI-  196 (486)
T ss_pred             CCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCC-
Confidence            3556999999963  345666766666545555666655433 22222 234567899999999999999887632221 


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                       ...++.+..|++.++|++..+......
T Consensus       197 -~id~~al~~La~~s~G~lr~al~~Ldk  223 (486)
T PRK14953        197 -EYEEKALDLLAQASEGGMRDAASLLDQ  223 (486)
T ss_pred             -CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence             234566889999999998866655533

>PRK05707 DNA polymerase III subunit delta'; Validated

Probab=98.65  E-value=1.1e-06  Score=77.42  Aligned_cols=92  Identities=13%  Similarity=0.124  Sum_probs=63.4

Q ss_pred             EEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCCc
Q 020206           86 VLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDAS  161 (329)
Q Consensus        86 ~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~  161 (329)
                      -++|+|+++  +.+....++..+.+.+++..+|++|.+.. +... .+..+.+.+.+++.+++.+.+.... +..     
T Consensus       108 kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~~-~~~-----  181 (328)
T PRK05707        108 KVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQAL-PES-----  181 (328)
T ss_pred             eEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHhc-ccC-----
Confidence            355779995  55678888888877666777777777653 3322 2345678999999999999997654 111     


Q ss_pred             hHHHHHHHHHHhcCCchHHHHH
Q 020206          162 YIELTHEAIKYAQGVPIALKIL  183 (329)
Q Consensus       162 ~~~~~~~i~~~~~g~Plal~~~  183 (329)
                      .++.+..++..++|.|.....+
T Consensus       182 ~~~~~~~~l~la~Gsp~~A~~l  203 (328)
T PRK05707        182 DERERIELLTLAGGSPLRALQL  203 (328)
T ss_pred             ChHHHHHHHHHcCCCHHHHHHH
Confidence            1233667789999999754433

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed

Probab=98.64  E-value=7.9e-07  Score=85.89  Aligned_cols=155  Identities=20%  Similarity=0.250  Sum_probs=89.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh--
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR--   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~--   80 (329)
                      .+-+.|+|++|+||||||+.+++.....|.   .+.   ..  .....++ +.+...                 ..+.  
T Consensus        52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~---~ln---a~--~~~i~di-r~~i~~-----------------a~~~l~  105 (725)
T PRK13341         52 VGSLILYGPPGVGKTTLARIIANHTRAHFS---SLN---AV--LAGVKDL-RAEVDR-----------------AKERLE  105 (725)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCcce---eeh---hh--hhhhHHH-HHHHHH-----------------HHHHhh
Confidence            346789999999999999999987654431   111   00  0011111 111111                 1111  


Q ss_pred             hcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEe--CchhH--HH-hcCCCeEEEecCCChhhhHHHHhhhhc
Q 020206           81 LTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITA--RDKQA--LI-NCGVNKIYQIKELVHVDALKLLNQCAF  153 (329)
Q Consensus        81 ~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilits--r~~~~--~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~  153 (329)
                      ..+++.+|+|||++  +....+.++..+.   .+..+++++  .+...  .. .......+.+++++.++...++.....
T Consensus       106 ~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~  182 (725)
T PRK13341        106 RHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQ  182 (725)
T ss_pred             hcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHH
Confidence            12356799999995  4445555655442   344445433  33211  11 112345789999999999999987663


Q ss_pred             C-----CCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          154 G-----RDHPDASYIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       154 ~-----~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                      .     ........++..+.|++.+.|+...+..+...
T Consensus       183 ~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~  220 (725)
T PRK13341        183 DKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALEL  220 (725)
T ss_pred             HHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            1     01222345677899999999987665555443

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.64  E-value=2.7e-06  Score=77.30  Aligned_cols=100  Identities=8%  Similarity=0.041  Sum_probs=65.8

Q ss_pred             ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCc-hhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      .+-++|+|+++.  .+....++..+.+.++...+|+++.+ ...... ......+++.++++++....+...+....  .
T Consensus       127 ~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g--~  204 (397)
T PRK14955        127 RYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEG--I  204 (397)
T ss_pred             CeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcC--C
Confidence            455899999963  34566777776655556666665543 333222 12335688999999999999988763221  2


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                      ...++.++.|+..++|++.-+.....
T Consensus       205 ~i~~~al~~l~~~s~g~lr~a~~~L~  230 (397)
T PRK14955        205 SVDADALQLIGRKAQGSMRDAQSILD  230 (397)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            24467799999999999976655443

>PRK09111 DNA polymerase III subunits gamma and tau; Validated

Probab=98.64  E-value=3.8e-06  Score=79.56  Aligned_cols=101  Identities=10%  Similarity=0.048  Sum_probs=68.8

Q ss_pred             ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCc-hhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      ++-++|+|+++.  ......++..+.+.++.+.+|++|.. ...... ....+.+.+..++.++....+.+.+....  .
T Consensus       132 ~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~keg--i  209 (598)
T PRK09111        132 RYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEG--V  209 (598)
T ss_pred             CcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcC--C
Confidence            345899999953  45577777777665667777665533 332222 23456889999999999999988763222  1


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                      ...++.+..|++.++|.+..+......
T Consensus       210 ~i~~eAl~lIa~~a~Gdlr~al~~Ldk  236 (598)
T PRK09111        210 EVEDEALALIARAAEGSVRDGLSLLDQ  236 (598)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            234567899999999999877655533

>PRK06620 hypothetical protein; Validated

Probab=98.62  E-value=6.8e-07  Score=73.94  Aligned_cols=140  Identities=11%  Similarity=0.005  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +.+.|+|++|+|||+|++.+++...     ..+..      .....    .                    .    .. +
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~-----~~~~~------~~~~~----~--------------------~----~~-~   84 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSN-----AYIIK------DIFFN----E--------------------E----IL-E   84 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccC-----CEEcc------hhhhc----h--------------------h----HH-h
Confidence            5689999999999999998766542     12211      00000    0                    0    01 1


Q ss_pred             ceEEEEEecCCChhh--HHHHhcccCCCCCCcEEEEEeCchhHH---Hh----cCCCeEEEecCCChhhhHHHHhhhhcC
Q 020206           84 KKVLIVFDDVNHPRQ--IEFLIGNLDWFASGSRILITARDKQAL---IN----CGVNKIYQIKELVHVDALKLLNQCAFG  154 (329)
Q Consensus        84 ~~~LlvlDdv~~~~~--~~~l~~~l~~~~~~~~ilitsr~~~~~---~~----~~~~~~~~l~~l~~~e~~~ll~~~~~~  154 (329)
                      ..-++++||++..+.  +-.+...+.  ..|..+|+|++.++..   ..    +...-.+++++++.++-..++.+....
T Consensus        85 ~~d~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~  162 (214)
T PRK06620         85 KYNAFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI  162 (214)
T ss_pred             cCCEEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence            224788999964332  222322222  3456788888865432   11    224457899999999988888877632


Q ss_pred             CCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          155 RDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       155 ~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ..  -...+++++.|++.+.|.-..+..+...+
T Consensus       163 ~~--l~l~~ev~~~L~~~~~~d~r~l~~~l~~l  193 (214)
T PRK06620        163 SS--VTISRQIIDFLLVNLPREYSKIIEILENI  193 (214)
T ss_pred             cC--CCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            21  22446779999999988887776655554

>PRK14970 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.61  E-value=8e-06  Score=73.71  Aligned_cols=163  Identities=18%  Similarity=0.176  Sum_probs=93.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC--------CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcch
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR--------FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGL   74 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   74 (329)
                      ++.+.++|++|+|||++|..+++.+...        +...+...+   ........+ +..+.......+          
T Consensus        39 ~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~-i~~l~~~~~~~p----------  104 (367)
T PRK14970         39 AQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD---AASNNSVDD-IRNLIDQVRIPP----------  104 (367)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec---cccCCCHHH-HHHHHHHHhhcc----------
Confidence            3578899999999999999998876431        121111110   000111111 222222211110          


Q ss_pred             HHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhh
Q 020206           75 NFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        75 ~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                            ..+++-++++|+++.  ...+..++..+...+....+|+++... ..... ......++++++++++...++..
T Consensus       105 ------~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~  178 (367)
T PRK14970        105 ------QTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAG  178 (367)
T ss_pred             ------ccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHH
Confidence                  112445899999853  344666665554434455566555332 22211 23445789999999999999987


Q ss_pred             hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      .+.....  ...++.+..|+..++|.+..+......+
T Consensus       179 ~~~~~g~--~i~~~al~~l~~~~~gdlr~~~~~lekl  213 (367)
T PRK14970        179 IAVKEGI--KFEDDALHIIAQKADGALRDALSIFDRV  213 (367)
T ss_pred             HHHHcCC--CCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            6633222  2345779999999999887655544433

>PRK14959 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.60  E-value=5e-06  Score=78.33  Aligned_cols=102  Identities=9%  Similarity=0.104  Sum_probs=66.3

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-+||||+++.  ......|+..+........+|++|.+. .+... ......+++++++.++....+...+....  
T Consensus       118 g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~eg--  195 (624)
T PRK14959        118 GRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREG--  195 (624)
T ss_pred             CCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcC--
Confidence            3556999999954  355667777665444556666655543 33222 23345789999999999999987663222  


Q ss_pred             CCchHHHHHHHHHHhcCCch-HHHHHHhh
Q 020206          159 DASYIELTHEAIKYAQGVPI-ALKILGRF  186 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Pl-al~~~~~~  186 (329)
                      ....++.+..|++.++|.+. ++.++-..
T Consensus       196 i~id~eal~lIA~~s~GdlR~Al~lLeql  224 (624)
T PRK14959        196 VDYDPAAVRLIARRAAGSVRDSMSLLGQV  224 (624)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            12345678999999999874 55555433

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=98.60  E-value=2.9e-07  Score=74.98  Aligned_cols=152  Identities=16%  Similarity=0.182  Sum_probs=80.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      .-+.+|||||+||||||.-+++.....|.   +.+    ...-....++...                     +. .+ +
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~---~~s----g~~i~k~~dl~~i---------------------l~-~l-~  100 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVNFK---ITS----GPAIEKAGDLAAI---------------------LT-NL-K  100 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--EE---EEE----CCC--SCHHHHHH---------------------HH-T---
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCCeE---ecc----chhhhhHHHHHHH---------------------HH-hc-C
Confidence            45899999999999999999998775542   222    1001112222221                     11 12 2


Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCC--------CC----------CcEEE-EEeCchhHHHhcC--CCeEEEecCCC
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWF--------AS----------GSRIL-ITARDKQALINCG--VNKIYQIKELV  140 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~--------~~----------~~~il-itsr~~~~~~~~~--~~~~~~l~~l~  140 (329)
                      ++.+|++|+++  +...-+.+.+.+.+.        ++          ...+| -|||.......+.  ..-...++..+
T Consensus       101 ~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~  180 (233)
T PF05496_consen  101 EGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYS  180 (233)
T ss_dssp             TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----T
T ss_pred             CCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCC
Confidence            34588889995  334444443332211        11          11222 3666543333222  33456799999


Q ss_pred             hhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          141 HVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       141 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      .+|-.+++.+.+..  -.....++.+.+|+..+.|-|.--.-+.+..
T Consensus       181 ~~el~~Iv~r~a~~--l~i~i~~~~~~~Ia~rsrGtPRiAnrll~rv  225 (233)
T PF05496_consen  181 EEELAKIVKRSARI--LNIEIDEDAAEEIARRSRGTPRIANRLLRRV  225 (233)
T ss_dssp             HHHHHHHHHHCCHC--TT-EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH--hCCCcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            99999999876522  2223556779999999999997554444443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=98.60  E-value=1.7e-06  Score=83.09  Aligned_cols=217  Identities=14%  Similarity=0.112  Sum_probs=107.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC-----CC--ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR-----FE--GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLN   75 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~   75 (329)
                      .++.|+|++|+|||+.++.+++.+.+.     .+  .++++.    +........++..|..++............ ...
T Consensus       782 nvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYIN----Cm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLe  857 (1164)
T PTZ00112        782 QILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEIN----GMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILD  857 (1164)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEe----CCccCCHHHHHHHHHHHHcCCCCCccccHHHHHH
Confidence            456799999999999999999876432     22  123443    222345666777777777443322121111 222


Q ss_pred             HHHhhh-c--CceEEEEEecCCChh--hHHHHhcccCCC-CCCcEE--EEEeCchh----HHHhcC---CCeEEEecCCC
Q 020206           76 FQSKRL-T--RKKVLIVFDDVNHPR--QIEFLIGNLDWF-ASGSRI--LITARDKQ----ALINCG---VNKIYQIKELV  140 (329)
Q Consensus        76 ~l~~~~-~--~~~~LlvlDdv~~~~--~~~~l~~~l~~~-~~~~~i--litsr~~~----~~~~~~---~~~~~~l~~l~  140 (329)
                      .+...+ .  +...+||||+++...  .-+.|...+.+. ..++++  |..+....    ......   ....+.+++++
T Consensus       858 rLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYT  937 (1164)
T PTZ00112        858 RLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYK  937 (1164)
T ss_pred             HHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCC
Confidence            233222 1  234699999995321  111122111111 123433  33333221    111111   11246779999


Q ss_pred             hhhhHHHHhhhhcCCCCCCCchHHHHHHHHH---HhcCCc-hHHHHHHhhhc--CC---CHHHHHHHHHhhccCChhhHH
Q 020206          141 HVDALKLLNQCAFGRDHPDASYIELTHEAIK---YAQGVP-IALKILGRFLF--RK---RKEVWENAISKLEMVPQMEIQ  211 (329)
Q Consensus       141 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~---~~~g~P-lal~~~~~~l~--~~---~~~~~~~~~~~l~~~~~~~~~  211 (329)
                      .+|..+++..++...  .....++++..+++   ...|.- .||.++-....  ..   ...........+       ..
T Consensus       938 aEQL~dILk~RAe~A--~gVLdDdAIELIArkVAq~SGDARKALDILRrAgEikegskVT~eHVrkAleei-------E~ 1008 (1164)
T PTZ00112        938 GDEIEKIIKERLENC--KEIIDHTAIQLCARKVANVSGDIRKALQICRKAFENKRGQKIVPRDITEATNQL-------FD 1008 (1164)
T ss_pred             HHHHHHHHHHHHHhC--CCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHH-------Hh
Confidence            999999999988432  12233444555554   333433 33333322221  11   112222222111       12


Q ss_pred             HHHHhhhcCCChhhHhHHHhhh
Q 020206          212 EVLKISYDGLDDKEKNIFLDIA  233 (329)
Q Consensus       212 ~~l~~~~~~L~~~~~~~l~~ls  233 (329)
                      ..+...+..||.+.+-+|..+.
T Consensus      1009 srI~e~IktLPlHqKLVLlALI 1030 (1164)
T PTZ00112       1009 SPLTNAINYLPWPFKMFLTCLI 1030 (1164)
T ss_pred             hhHHHHHHcCCHHHHHHHHHHH
Confidence            2345567789988888776544

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=98.59  E-value=1e-06  Score=79.23  Aligned_cols=150  Identities=15%  Similarity=0.200  Sum_probs=81.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-+.|+|++|+|||++|+.+++.....|-.+   .          ..++.....    ...     .......+...-.
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v---~----------~~~l~~~~~----g~~-----~~~i~~~f~~a~~  213 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV---V----------GSELVRKYI----GEG-----ARLVREIFELAKE  213 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCCEEec---c----------hHHHHHHhh----hHH-----HHHHHHHHHHHHh
Confidence            35689999999999999999999765432111   0          011111100    000     0001111222223


Q ss_pred             CceEEEEEecCCCh-------------h---hHHHHhcccCCC--CCCcEEEEEeCchhHH-----HhcCCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHP-------------R---QIEFLIGNLDWF--ASGSRILITARDKQAL-----INCGVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-------------~---~~~~l~~~l~~~--~~~~~ilitsr~~~~~-----~~~~~~~~~~l~~l  139 (329)
                      ..+.+|++|+++..             .   .+..++..+...  ..+..+|.||......     ........+.++..
T Consensus       214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P  293 (364)
T TIGR01242       214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP  293 (364)
T ss_pred             cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence            46789999998532             1   122333222211  2355677777654211     11123457889999


Q ss_pred             ChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 020206          140 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  177 (329)
                      +.++..+++.....+......   -....+++.+.|..
T Consensus       294 ~~~~r~~Il~~~~~~~~l~~~---~~~~~la~~t~g~s  328 (364)
T TIGR01242       294 DFEGRLEILKIHTRKMKLAED---VDLEAIAKMTEGAS  328 (364)
T ss_pred             CHHHHHHHHHHHHhcCCCCcc---CCHHHHHHHcCCCC
Confidence            999999999877643332211   11677888887764

Many proteins may score above the trusted cutoff because an internal

>PRK06647 DNA polymerase III subunits gamma and tau; Validated

Probab=98.59  E-value=1.1e-05  Score=76.20  Aligned_cols=101  Identities=8%  Similarity=0.007  Sum_probs=68.2

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +++-++|+|+++  +......++..+...+....+|++|.+. ..... ....+.+++.+++.++....+...+....  
T Consensus       118 ~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~eg--  195 (563)
T PRK06647        118 SRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQ--  195 (563)
T ss_pred             CCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcC--
Confidence            345589999995  3455777777776555666676666543 22222 23456789999999999999988763322  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                      ....++.+..|++.++|.+..+..+..
T Consensus       196 i~id~eAl~lLa~~s~GdlR~alslLd  222 (563)
T PRK06647        196 IKYEDEALKWIAYKSTGSVRDAYTLFD  222 (563)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            223457788899999999876655543

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=98.58  E-value=1.2e-06  Score=75.09  Aligned_cols=131  Identities=10%  Similarity=0.098  Sum_probs=69.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC--CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ..-+.++|++|+|||++|+.+++.+....  ....++.    +    ...++..    .....     ........+.. 
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~----~----~~~~l~~----~~~g~-----~~~~~~~~~~~-  103 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIE----V----ERADLVG----EYIGH-----TAQKTREVIKK-  103 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEE----e----cHHHhhh----hhccc-----hHHHHHHHHHh-
Confidence            34678999999999999999998764321  1111111    0    0111111    10000     00001122221 


Q ss_pred             hcCceEEEEEecCCC----------hhhHHHHhcccCCCCCCcEEEEEeCchhH--HH----h--cCCCeEEEecCCChh
Q 020206           81 LTRKKVLIVFDDVNH----------PRQIEFLIGNLDWFASGSRILITARDKQA--LI----N--CGVNKIYQIKELVHV  142 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~----------~~~~~~l~~~l~~~~~~~~ilitsr~~~~--~~----~--~~~~~~~~l~~l~~~  142 (329)
                      .  ...+|++|+++.          .+.+..++..+........+++++.....  ..    .  ......+.+++++.+
T Consensus       104 a--~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~  181 (261)
T TIGR02881       104 A--LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVE  181 (261)
T ss_pred             c--cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHH
Confidence            1  234899999953          23455565555443344455565543211  00    1  123356889999999


Q ss_pred             hhHHHHhhhhc
Q 020206          143 DALKLLNQCAF  153 (329)
Q Consensus       143 e~~~ll~~~~~  153 (329)
                      |..+++...+.
T Consensus       182 el~~Il~~~~~  192 (261)
T TIGR02881       182 ELMEIAERMVK  192 (261)
T ss_pred             HHHHHHHHHHH
Confidence            99999988773

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>PRK08451 DNA polymerase III subunits gamma and tau; Validated

Probab=98.57  E-value=9.8e-06  Score=75.39  Aligned_cols=99  Identities=11%  Similarity=0.067  Sum_probs=68.8

Q ss_pred             ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhH-HH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQA-LI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~-~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.-++|+|+++.  .+....++..+...++.+.+|++|.+... .. .......+++.+++.++....+...+.....  
T Consensus       117 ~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi--  194 (535)
T PRK08451        117 RFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGV--  194 (535)
T ss_pred             CeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCC--
Confidence            445899999963  45567777777665667777777765421 11 1234568999999999999999877633221  


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ...++.+..|++.++|.+.-+....
T Consensus       195 ~i~~~Al~~Ia~~s~GdlR~alnlL  219 (535)
T PRK08451        195 SYEPEALEILARSGNGSLRDTLTLL  219 (535)
T ss_pred             CCCHHHHHHHHHHcCCcHHHHHHHH
Confidence            2345778999999999997666655

>PRK07133 DNA polymerase III subunits gamma and tau; Validated

Probab=98.51  E-value=1.9e-05  Score=75.73  Aligned_cols=101  Identities=8%  Similarity=0.068  Sum_probs=66.5

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCc-hhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-++|+|+++  ..+....++..+...+....+|++|.. ..+... ....+.+.+.+++.++....+...+....  
T Consensus       117 g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~keg--  194 (725)
T PRK07133        117 SKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKEN--  194 (725)
T ss_pred             CCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcC--
Confidence            345589999995  345677777776655556665555543 333322 34456899999999999999987652222  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                      ....++++..++..++|.+.-+..+..
T Consensus       195 I~id~eAl~~LA~lS~GslR~AlslLe  221 (725)
T PRK07133        195 ISYEKNALKLIAKLSSGSLRDALSIAE  221 (725)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            123346688999999998865554443

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.50  E-value=2.4e-05  Score=74.45  Aligned_cols=98  Identities=8%  Similarity=0.067  Sum_probs=65.0

Q ss_pred             ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCc-hhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      .+-++|+||++.  ......|+..+...+....+|++|.+ ..+... ......+++.+++.++....+...+....  .
T Consensus       127 ~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~eg--i  204 (620)
T PRK14954        127 RYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEG--I  204 (620)
T ss_pred             CCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcC--C
Confidence            344889999954  34567777777655556666555543 333222 34567899999999999999887663221  1


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALKIL  183 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~  183 (329)
                      ...++.++.|++.++|....+...
T Consensus       205 ~I~~eal~~La~~s~Gdlr~al~e  228 (620)
T PRK14954        205 QIDADALQLIARKAQGSMRDAQSI  228 (620)
T ss_pred             CCCHHHHHHHHHHhCCCHHHHHHH
Confidence            134566899999999987755443

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=98.49  E-value=2.1e-06  Score=65.28  Aligned_cols=23  Identities=30%  Similarity=0.434  Sum_probs=21.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      |.|+|++|+|||++|+.+++...
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            67999999999999999999974

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK08116 hypothetical protein; Validated

Probab=98.49  E-value=9.3e-07  Score=75.73  Aligned_cols=102  Identities=22%  Similarity=0.309  Sum_probs=58.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +-+.|+|++|+|||.||..+++.+..+...++++.          ..+++..+...+.....      .....+.+.+.+
T Consensus       115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~----------~~~ll~~i~~~~~~~~~------~~~~~~~~~l~~  178 (268)
T PRK08116        115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVN----------FPQLLNRIKSTYKSSGK------EDENEIIRSLVN  178 (268)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcccc------ccHHHHHHHhcC
Confidence            35889999999999999999998876644455544          34445555444322111      112223333444


Q ss_pred             ceEEEEEecCC--Ch--hhHHHHhcccCC-CCCCcEEEEEeCch
Q 020206           84 KKVLIVFDDVN--HP--RQIEFLIGNLDW-FASGSRILITARDK  122 (329)
Q Consensus        84 ~~~LlvlDdv~--~~--~~~~~l~~~l~~-~~~~~~ilitsr~~  122 (329)
                      .+ ||||||+.  ..  .....+...+.. ...+..+|+||...
T Consensus       179 ~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~  221 (268)
T PRK08116        179 AD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS  221 (268)
T ss_pred             CC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence            44 89999993  11  122223322221 12455688888754

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=98.48  E-value=3.1e-06  Score=75.56  Aligned_cols=161  Identities=16%  Similarity=0.123  Sum_probs=97.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ...+.|+|+.|.|||.|+..+++......+...++.    +    ...++.......+...         ..+.+++.. 
T Consensus       113 ~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y----~----~se~f~~~~v~a~~~~---------~~~~Fk~~y-  174 (408)
T COG0593         113 YNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVY----L----TSEDFTNDFVKALRDN---------EMEKFKEKY-  174 (408)
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEe----c----cHHHHHHHHHHHHHhh---------hHHHHHHhh-
Confidence            356899999999999999999998887777544443    2    2334444444443321         233344444 


Q ss_pred             CceEEEEEecCC----ChhhHHHHhcccCCC-CCCcEEEEEeCchhHHH---------hcCCCeEEEecCCChhhhHHHH
Q 020206           83 RKKVLIVFDDVN----HPRQIEFLIGNLDWF-ASGSRILITARDKQALI---------NCGVNKIYQIKELVHVDALKLL  148 (329)
Q Consensus        83 ~~~~LlvlDdv~----~~~~~~~l~~~l~~~-~~~~~ilitsr~~~~~~---------~~~~~~~~~l~~l~~~e~~~ll  148 (329)
                       .--++++||++    .....+.++..+... ..+..||+|++..+..-         .+.....+.+.+++.+....++
T Consensus       175 -~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL  253 (408)
T COG0593         175 -SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAIL  253 (408)
T ss_pred             -ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHH
Confidence             22389999994    223344444444432 23448888886653221         1235578899999999999999


Q ss_pred             hhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          149 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ++.+.....  ...+++..-+++....+-..+.-+.
T Consensus       254 ~kka~~~~~--~i~~ev~~~la~~~~~nvReLegaL  287 (408)
T COG0593         254 RKKAEDRGI--EIPDEVLEFLAKRLDRNVRELEGAL  287 (408)
T ss_pred             HHHHHhcCC--CCCHHHHHHHHHHhhccHHHHHHHH
Confidence            986622221  2334566667766666555444443

>PRK05563 DNA polymerase III subunits gamma and tau; Validated

Probab=98.47  E-value=2.6e-05  Score=73.83  Aligned_cols=100  Identities=11%  Similarity=0.030  Sum_probs=65.5

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ++.-++|+|+++.  ......++..+...+....+|++|... .+... .+....+.+.+++.++....+...+..... 
T Consensus       118 ~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi-  196 (559)
T PRK05563        118 AKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGI-  196 (559)
T ss_pred             CCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCC-
Confidence            3456899999964  455777777766545565666555433 22222 234567889999999999999887632221 


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                       ...++.+..|++.++|.+.......
T Consensus       197 -~i~~~al~~ia~~s~G~~R~al~~L  221 (559)
T PRK05563        197 -EYEDEALRLIARAAEGGMRDALSIL  221 (559)
T ss_pred             -CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence             1335668889999999887555444

>PRK14965 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.46  E-value=1.4e-05  Score=75.85  Aligned_cols=97  Identities=8%  Similarity=0.054  Sum_probs=63.8

Q ss_pred             ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.-++|+|+++.  ......|+..+.+.+....+|++|.+. .+... .+....+++.+++.++....+...+....  .
T Consensus       119 ~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~eg--i  196 (576)
T PRK14965        119 RYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEG--I  196 (576)
T ss_pred             CceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhC--C
Confidence            344899999953  455677777776555666666655443 33322 23456788999999999988887663222  1


Q ss_pred             CchHHHHHHHHHHhcCCchHHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALKI  182 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~  182 (329)
                      ...++.+..|++.++|....+..
T Consensus       197 ~i~~~al~~la~~a~G~lr~al~  219 (576)
T PRK14965        197 SISDAALALVARKGDGSMRDSLS  219 (576)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHH
Confidence            23456688999999998754433

>PRK14971 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.46  E-value=2.5e-05  Score=74.52  Aligned_cols=99  Identities=13%  Similarity=0.096  Sum_probs=66.4

Q ss_pred             ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEe-CchhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITA-RDKQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilits-r~~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      .+=++|+|+++.  .+....|+..+...+....+|++| +...+... ......+++++++.++....+...+.....  
T Consensus       121 ~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi--  198 (614)
T PRK14971        121 KYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGI--  198 (614)
T ss_pred             CcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCC--
Confidence            344889999853  455777777776655666666555 33333332 245568999999999999999876632221  


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ...++.+..|++.++|...-+....
T Consensus       199 ~i~~~al~~La~~s~gdlr~al~~L  223 (614)
T PRK14971        199 TAEPEALNVIAQKADGGMRDALSIF  223 (614)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            2334668999999999887665544

>PRK06305 DNA polymerase III subunits gamma and tau; Validated

Probab=98.45  E-value=2.2e-05  Score=72.38  Aligned_cols=100  Identities=12%  Similarity=0.062  Sum_probs=64.9

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      ..+-++|+|+++.  .+....++..+...+....+|++|.+. .+... ......+++.++++++....+...+....  
T Consensus       120 ~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg--  197 (451)
T PRK06305        120 SRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEG--  197 (451)
T ss_pred             CCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcC--
Confidence            3456899999853  344566666666545566666666433 22221 23456789999999999999887653221  


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ....++.+..|+..++|.+.-+....
T Consensus       198 ~~i~~~al~~L~~~s~gdlr~a~~~L  223 (451)
T PRK06305        198 IETSREALLPIARAAQGSLRDAESLY  223 (451)
T ss_pred             CCCCHHHHHHHHHHcCCCHHHHHHHH
Confidence            12345678999999999886544443

>PRK14948 DNA polymerase III subunits gamma and tau; Provisional

Probab=98.45  E-value=6e-05  Score=72.01  Aligned_cols=101  Identities=12%  Similarity=0.049  Sum_probs=65.9

Q ss_pred             ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.-++|+|+++.  .+....++..+........+|++|.+. .+... ......+.+..++.++....+...+....  .
T Consensus       121 ~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~keg--i  198 (620)
T PRK14948        121 RWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKES--I  198 (620)
T ss_pred             CceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhC--C
Confidence            445899999964  455777777776545566666555443 22222 23456788899999998888877653211  1


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                      ...++.+..|++.++|.+..+..+...
T Consensus       199 ~is~~al~~La~~s~G~lr~A~~lLek  225 (620)
T PRK14948        199 EIEPEALTLVAQRSQGGLRDAESLLDQ  225 (620)
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            133466889999999998766555443

>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]

Probab=98.44  E-value=9.1e-05  Score=66.18  Aligned_cols=106  Identities=13%  Similarity=0.071  Sum_probs=68.4

Q ss_pred             ceEEEEEecCCCh--------hhHHHHhcccCCCCCCcEEEEEeCchhHHH----hc--CCCeEEEecCCChhhhHHHHh
Q 020206           84 KKVLIVFDDVNHP--------RQIEFLIGNLDWFASGSRILITARDKQALI----NC--GVNKIYQIKELVHVDALKLLN  149 (329)
Q Consensus        84 ~~~LlvlDdv~~~--------~~~~~l~~~l~~~~~~~~ilitsr~~~~~~----~~--~~~~~~~l~~l~~~e~~~ll~  149 (329)
                      .+-+||+||+...        +.+.++...+.. .+-..||+.|.+.....    .+  ...+.+.|...+++.|.+++.
T Consensus       148 ~~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~-~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~  226 (431)
T PF10443_consen  148 RRPVVVIDNFLHKAEENDFIYDKLAEWAASLVQ-NNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL  226 (431)
T ss_pred             cCCEEEEcchhccCcccchHHHHHHHHHHHHHh-cCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence            4669999999321        112222222221 23446787776653222    22  355678899999999999999


Q ss_pred             hhhcCCCCC--------------C----CchHHHHHHHHHHhcCCchHHHHHHhhhcCC
Q 020206          150 QCAFGRDHP--------------D----ASYIELTHEAIKYAQGVPIALKILGRFLFRK  190 (329)
Q Consensus       150 ~~~~~~~~~--------------~----~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~  190 (329)
                      .++......              .    .....-.+.+++..||=-.-|+.+++.++..
T Consensus       227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksG  285 (431)
T PF10443_consen  227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSG  285 (431)
T ss_pred             HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcC
Confidence            887432110              0    1234457888999999999999999999884

It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].

>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=98.44  E-value=3.4e-05  Score=69.98  Aligned_cols=220  Identities=17%  Similarity=0.099  Sum_probs=125.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRK   84 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~   84 (329)
                      +++|.||.++||||+++.+.+...+.   .+++...........+.+.....                     ...-..+
T Consensus        39 i~~i~GpR~~GKTtll~~l~~~~~~~---~iy~~~~d~~~~~~~l~d~~~~~---------------------~~~~~~~   94 (398)
T COG1373          39 IILILGPRQVGKTTLLKLLIKGLLEE---IIYINFDDLRLDRIELLDLLRAY---------------------IELKERE   94 (398)
T ss_pred             EEEEECCccccHHHHHHHHHhhCCcc---eEEEEecchhcchhhHHHHHHHH---------------------HHhhccC
Confidence            89999999999999997777766554   45554221111111111111111                     1111116


Q ss_pred             eEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHh------cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           85 KVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALIN------CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        85 ~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~------~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +..|+||.|+....|...+..+.+..+. .+++|+.+......      .+....+.+.||+..|-..+-....    ..
T Consensus        95 ~~yifLDEIq~v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~~~~~----~~  169 (398)
T COG1373          95 KSYIFLDEIQNVPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLKGEEI----EP  169 (398)
T ss_pred             CceEEEecccCchhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhccccc----ch
Confidence            7899999999999998888887765655 78888876643322      1344678899999888776643100    00


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHH-HHHHhhhcCCC-hhhHhHHHhhh-cc
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQ-EVLKISYDGLD-DKEKNIFLDIA-CF  235 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~-~~l~~~~~~L~-~~~~~~l~~ls-~~  235 (329)
                      . .... .-.-.-.+||.|-++..--..-.      ...+...       .+. .+.+. ....+ ...++++..++ -.
T Consensus       170 ~-~~~~-~f~~Yl~~GGfP~~v~~~~~~~~------~~~~~~~-------~~~~Di~~~-~~~~~~~~~k~i~~~l~~~~  233 (398)
T COG1373         170 S-KLEL-LFEKYLETGGFPESVKADLSEKK------LKEYLDT-------ILKRDIIER-GKIENADLMKRILRFLASNI  233 (398)
T ss_pred             h-HHHH-HHHHHHHhCCCcHHHhCcchhhH------HHHHHHH-------HHHHHHHHH-cCcccHHHHHHHHHHHHhhc
Confidence            0 1111 22335567899986643221111      1111111       011 11111 11111 35566655555 55


Q ss_pred             cCccChhHHHHHH-HhCCcchhhhHHHHhhcccee
Q 020206          236 LVGEDRDIVTKYL-NACEFFATSGIEVLVDKSLIT  269 (329)
Q Consensus       236 ~~~~~~~~l~~~~-~~~~~~~~~~l~~L~~~~Ll~  269 (329)
                      +..++...++..+ +.+.......++.|.+..++.
T Consensus       234 g~~~s~~~la~~l~~is~~Ti~~Yl~~le~~fll~  268 (398)
T COG1373         234 GSPISYSSLARELKGISKDTIRKYLSYLEDAFLLF  268 (398)
T ss_pred             CCccCHHHHHHHHhccchHHHHHHHHHHHHhhheE
Confidence            5668999999998 455555667888888888775

>PRK08181 transposase; Validated

Probab=98.44  E-value=1.4e-06  Score=74.41  Aligned_cols=99  Identities=23%  Similarity=0.218  Sum_probs=56.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      .-+.|+|++|+|||.|+..+++....+...+.|+.          ..+++..+...... .        ......+.+. 
T Consensus       107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~----------~~~L~~~l~~a~~~-~--------~~~~~l~~l~-  166 (269)
T PRK08181        107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR----------TTDLVQKLQVARRE-L--------QLESAIAKLD-  166 (269)
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee----------HHHHHHHHHHHHhC-C--------cHHHHHHHHh-
Confidence            46899999999999999999998766554555554          34455544333211 0        1111222222 


Q ss_pred             ceEEEEEecCC----ChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           84 KKVLIVFDDVN----HPRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        84 ~~~LlvlDdv~----~~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      +.-||||||+.    +......+...+.....+..+||||...
T Consensus       167 ~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~  209 (269)
T PRK08181        167 KFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP  209 (269)
T ss_pred             cCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence            33499999993    2222233333332212234688888765

>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]

Probab=98.43  E-value=1.7e-05  Score=65.51  Aligned_cols=176  Identities=15%  Similarity=0.099  Sum_probs=102.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc----chHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI----GLNFQSK   79 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~l~~   79 (329)
                      .++.|+|+-|+|||.+++.......++-..++++.     ....+...+...+...+.....  ...+.    ....+..
T Consensus        52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~-----~~~~s~~~~~~ai~~~l~~~p~--~~~~~~~e~~~~~L~a  124 (269)
T COG3267          52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVID-----KPTLSDATLLEAIVADLESQPK--VNVNAVLEQIDRELAA  124 (269)
T ss_pred             ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEec-----CcchhHHHHHHHHHHHhccCcc--chhHHHHHHHHHHHHH
Confidence            48999999999999999955555443322222222     1233455666666666655222  11111    1222222


Q ss_pred             h-hcCce-EEEEEecCCCh-----hhHHHHhcccCCCCCCcEEEEEeCch-------hHHHhcC--CCeEEEecCCChhh
Q 020206           80 R-LTRKK-VLIVFDDVNHP-----RQIEFLIGNLDWFASGSRILITARDK-------QALINCG--VNKIYQIKELVHVD  143 (329)
Q Consensus        80 ~-~~~~~-~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilitsr~~-------~~~~~~~--~~~~~~l~~l~~~e  143 (329)
                      . .++++ +.+++|+.+..     +.++-|...-.+...-.+|+.....+       +......  ..-.|.++|++.++
T Consensus       125 l~~~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~  204 (269)
T COG3267         125 LVKKGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAE  204 (269)
T ss_pred             HHHhCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHH
Confidence            2 23455 89999998432     22333333322222223455544433       1222222  22238899999999


Q ss_pred             hHHHHhhhhcCCCC-CCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          144 ALKLLNQCAFGRDH-PDASYIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       144 ~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                      ...+++.+..+... .+-...+.+..|+....|+|.+|..++..
T Consensus       205 t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~  248 (269)
T COG3267         205 TGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL  248 (269)
T ss_pred             HHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence            99999988855432 22335677889999999999999988743

>PRK08769 DNA polymerase III subunit delta'; Validated

Probab=98.40  E-value=1.9e-05  Score=69.02  Aligned_cols=92  Identities=14%  Similarity=0.104  Sum_probs=63.7

Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.-++|||+++  +.+....++..+.+-++++.+|++|.+. .++.. .+..+.+.+.+++.+++.+.+....     .+
T Consensus       113 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~~~-----~~  187 (319)
T PRK08769        113 IAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLAQG-----VS  187 (319)
T ss_pred             CcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHHcC-----CC
Confidence            44589999996  4566788888877766777777777654 33333 2345678899999999999997532     11


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALKIL  183 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~  183 (329)
                         ...+..++..++|.|+....+
T Consensus       188 ---~~~a~~~~~l~~G~p~~A~~~  208 (319)
T PRK08769        188 ---ERAAQEALDAARGHPGLAAQW  208 (319)
T ss_pred             ---hHHHHHHHHHcCCCHHHHHHH
Confidence               122667899999999855433

>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins

Probab=98.40  E-value=1.5e-05  Score=68.05  Aligned_cols=177  Identities=14%  Similarity=0.074  Sum_probs=100.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCC------ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE------GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ   77 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l   77 (329)
                      +.+.|+|++|+|||++++++....-..++      .++.+.    ..+..+...++..|+..++................
T Consensus        62 p~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq----~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~  137 (302)
T PF05621_consen   62 PNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQ----MPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQV  137 (302)
T ss_pred             CceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEe----cCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHH
Confidence            56889999999999999999976422221      123333    56678899999999999987765423332233333


Q ss_pred             HhhhcC-ceEEEEEecCCCh-----hhHHHHhcccCCCCC---CcEEEEEeCchhHHHhc-----CCCeEEEecCCChh-
Q 020206           78 SKRLTR-KKVLIVFDDVNHP-----RQIEFLIGNLDWFAS---GSRILITARDKQALINC-----GVNKIYQIKELVHV-  142 (329)
Q Consensus        78 ~~~~~~-~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~---~~~ilitsr~~~~~~~~-----~~~~~~~l~~l~~~-  142 (329)
                      ...++. +-=+||+|++++.     ..-+.++..+...++   -+.|.+-|++-......     +....+.++....+ 
T Consensus       138 ~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~  217 (302)
T PF05621_consen  138 LRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDE  217 (302)
T ss_pred             HHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCc
Confidence            333433 2338999999652     223333333322222   22344444433222111     22345566665443 


Q ss_pred             hhHHHHhhh---hcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          143 DALKLLNQC---AFGRDHPDASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       143 e~~~ll~~~---~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      +...|+...   ..-...+.-..++.+..|++.++|+.--+..+.
T Consensus       218 ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll  262 (302)
T PF05621_consen  218 EFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLL  262 (302)
T ss_pred             HHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHH
Confidence            444554432   211222223456788999999999987655443

TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=98.40  E-value=7.2e-06  Score=74.28  Aligned_cols=150  Identities=15%  Similarity=0.208  Sum_probs=79.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-|.++|++|+|||++|+.+++.....|   +.+. .         .++..    ......     .......+.....
T Consensus       165 p~gvLL~GppGtGKT~lAkaia~~~~~~~---i~v~-~---------~~l~~----~~~g~~-----~~~i~~~f~~a~~  222 (389)
T PRK03992        165 PKGVLLYGPPGTGKTLLAKAVAHETNATF---IRVV-G---------SELVQ----KFIGEG-----ARLVRELFELARE  222 (389)
T ss_pred             CCceEEECCCCCChHHHHHHHHHHhCCCE---EEee-h---------HHHhH----hhccch-----HHHHHHHHHHHHh
Confidence            45689999999999999999998765321   1111 1         11111    100000     0001111222223


Q ss_pred             CceEEEEEecCCCh-------------hh---HHHHhcccCCC--CCCcEEEEEeCchhHHHh-----cCCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHP-------------RQ---IEFLIGNLDWF--ASGSRILITARDKQALIN-----CGVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-------------~~---~~~l~~~l~~~--~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l  139 (329)
                      ..+.+|+||+++..             +.   +..++..+...  ..+..||.||........     ......+.++..
T Consensus       223 ~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P  302 (389)
T PRK03992        223 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLP  302 (389)
T ss_pred             cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCC
Confidence            46789999999532             11   22222222211  124456666654321111     123457899999


Q ss_pred             ChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 020206          140 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  177 (329)
                      +.++-.+++..+.........   -....++..+.|.-
T Consensus       303 ~~~~R~~Il~~~~~~~~~~~~---~~~~~la~~t~g~s  337 (389)
T PRK03992        303 DEEGRLEILKIHTRKMNLADD---VDLEELAELTEGAS  337 (389)
T ss_pred             CHHHHHHHHHHHhccCCCCCc---CCHHHHHHHcCCCC
Confidence            999999999877633222111   11667778887754

>TIGR03689 pup_AAA proteasome ATPase

Probab=98.39  E-value=8.1e-06  Score=75.55  Aligned_cols=136  Identities=15%  Similarity=0.263  Sum_probs=70.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC-----CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ   77 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l   77 (329)
                      ++-+.++||+|+|||++|+.+++.+....     ....|+.    +..    .+++.    .......  ......+...
T Consensus       216 p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~----v~~----~eLl~----kyvGete--~~ir~iF~~A  281 (512)
T TIGR03689       216 PKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLN----IKG----PELLN----KYVGETE--RQIRLIFQRA  281 (512)
T ss_pred             CcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEe----ccc----hhhcc----cccchHH--HHHHHHHHHH
Confidence            35589999999999999999999875542     1222332    110    00100    0000000  0000011111


Q ss_pred             Hhh-hcCceEEEEEecCCCh---------hh-----HHHHhcccCCCC--CCcEEEEEeCchhHHH-h----cCCCeEEE
Q 020206           78 SKR-LTRKKVLIVFDDVNHP---------RQ-----IEFLIGNLDWFA--SGSRILITARDKQALI-N----CGVNKIYQ  135 (329)
Q Consensus        78 ~~~-~~~~~~LlvlDdv~~~---------~~-----~~~l~~~l~~~~--~~~~ilitsr~~~~~~-~----~~~~~~~~  135 (329)
                      ... ..+++++|+||+++..         .+     +..++..+....  .+..+|.||....... .    ......+.
T Consensus       282 r~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~  361 (512)
T TIGR03689       282 REKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIR  361 (512)
T ss_pred             HHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEE
Confidence            211 2347899999999521         11     223433332211  2334444554332211 1    13345689


Q ss_pred             ecCCChhhhHHHHhhhh
Q 020206          136 IKELVHVDALKLLNQCA  152 (329)
Q Consensus       136 l~~l~~~e~~~ll~~~~  152 (329)
                      ++..+.++..++|..+.
T Consensus       362 ~~~Pd~e~r~~Il~~~l  378 (512)
T TIGR03689       362 IERPDAEAAADIFSKYL  378 (512)
T ss_pred             eCCCCHHHHHHHHHHHh
Confidence            99999999999998876

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=98.39  E-value=1.1e-05  Score=69.88  Aligned_cols=128  Identities=12%  Similarity=0.140  Sum_probs=69.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCC--CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRF--EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      -+.++|++|+|||++|+.+++.+....  ....++.    ++    ..++..    .+.....     ......+.+ . 
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~----v~----~~~l~~----~~~g~~~-----~~~~~~~~~-a-  120 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS----VT----RDDLVG----QYIGHTA-----PKTKEILKR-A-  120 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE----ec----HHHHhH----hhcccch-----HHHHHHHHH-c-
Confidence            488999999999999999888764321  1112222    11    112211    1111100     001112222 1 


Q ss_pred             CceEEEEEecCCC-----------hhhHHHHhcccCCCCCCcEEEEEeCchh--HHHhc------CCCeEEEecCCChhh
Q 020206           83 RKKVLIVFDDVNH-----------PRQIEFLIGNLDWFASGSRILITARDKQ--ALINC------GVNKIYQIKELVHVD  143 (329)
Q Consensus        83 ~~~~LlvlDdv~~-----------~~~~~~l~~~l~~~~~~~~ilitsr~~~--~~~~~------~~~~~~~l~~l~~~e  143 (329)
                       .+-+|+||++..           .+....++..+.....+.++|+++....  .....      .....+.+++++.+|
T Consensus       121 -~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~ed  199 (284)
T TIGR02880       121 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAE  199 (284)
T ss_pred             -cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHH
Confidence             235889999952           2224445555544344556666664321  11111      224578999999999


Q ss_pred             hHHHHhhhh
Q 020206          144 ALKLLNQCA  152 (329)
Q Consensus       144 ~~~ll~~~~  152 (329)
                      ..+++....
T Consensus       200 l~~I~~~~l  208 (284)
T TIGR02880       200 LLVIAGLML  208 (284)
T ss_pred             HHHHHHHHH
Confidence            999998876

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=8.5e-06  Score=70.33  Aligned_cols=149  Identities=15%  Similarity=0.190  Sum_probs=80.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc-
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT-   82 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~-   82 (329)
                      +=|.+|||||+|||-||+.+|++....     |+...+            .++.....+++..      ....+-+..+ 
T Consensus       186 KGVLLYGPPGTGKTLLAkAVA~~T~At-----FIrvvg------------SElVqKYiGEGaR------lVRelF~lAre  242 (406)
T COG1222         186 KGVLLYGPPGTGKTLLAKAVANQTDAT-----FIRVVG------------SELVQKYIGEGAR------LVRELFELARE  242 (406)
T ss_pred             CceEeeCCCCCcHHHHHHHHHhccCce-----EEEecc------------HHHHHHHhccchH------HHHHHHHHHhh
Confidence            448899999999999999999875433     333111            1122222222221      2222222222 


Q ss_pred             CceEEEEEecCCC-------------hh---hHHHHhcccCCC--CCCcEEEEEeCchhHH-----HhcCCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNH-------------PR---QIEFLIGNLDWF--ASGSRILITARDKQAL-----INCGVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~-------------~~---~~~~l~~~l~~~--~~~~~ilitsr~~~~~-----~~~~~~~~~~l~~l  139 (329)
                      ..+++|++|+++.             .+   .+-.++..+...  ..+.+||.+|.....+     +.....+.++++.-
T Consensus       243 kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplP  322 (406)
T COG1222         243 KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLP  322 (406)
T ss_pred             cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCC
Confidence            4689999999842             11   133344443322  3355888877554322     22235567778755


Q ss_pred             ChhhhHHHHhhhhcC-CCCCCCchHHHHHHHHHHhcCCchH
Q 020206          140 VHVDALKLLNQCAFG-RDHPDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~-~~~~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                      +.+.=.++|.-+... ....+..    ++.|+..|.|..-|
T Consensus       323 d~~gR~~Il~IHtrkM~l~~dvd----~e~la~~~~g~sGA  359 (406)
T COG1222         323 DEEGRAEILKIHTRKMNLADDVD----LELLARLTEGFSGA  359 (406)
T ss_pred             CHHHHHHHHHHHhhhccCccCcC----HHHHHHhcCCCchH
Confidence            555555555544422 2222222    77788888886643

>CHL00181 cbbX CbbX; Provisional

Probab=98.36  E-value=3.3e-05  Score=66.89  Aligned_cols=129  Identities=11%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC-C-CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR-F-EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.++|++|+|||++|+.+++.+... + ...-|+.    +    +..++...    ......     ......+.. . 
T Consensus        61 ~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~----v----~~~~l~~~----~~g~~~-----~~~~~~l~~-a-  121 (287)
T CHL00181         61 HMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLT----V----TRDDLVGQ----YIGHTA-----PKTKEVLKK-A-  121 (287)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEE----e----cHHHHHHH----Hhccch-----HHHHHHHHH-c-
Confidence            47899999999999999999875432 1 1111222    1    11122211    111100     001111222 2 


Q ss_pred             CceEEEEEecCCC-----------hhhHHHHhcccCCCCCCcEEEEEeCchhHH--------HhcCCCeEEEecCCChhh
Q 020206           83 RKKVLIVFDDVNH-----------PRQIEFLIGNLDWFASGSRILITARDKQAL--------INCGVNKIYQIKELVHVD  143 (329)
Q Consensus        83 ~~~~LlvlDdv~~-----------~~~~~~l~~~l~~~~~~~~ilitsr~~~~~--------~~~~~~~~~~l~~l~~~e  143 (329)
                       ..-+|+||+++.           .+....++..+.....+..||+++......        ........+.+++++.+|
T Consensus       122 -~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~e  200 (287)
T CHL00181        122 -MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEE  200 (287)
T ss_pred             -cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHH
Confidence             234999999953           233444545444434556676776543211        111344578999999999


Q ss_pred             hHHHHhhhhc
Q 020206          144 ALKLLNQCAF  153 (329)
Q Consensus       144 ~~~ll~~~~~  153 (329)
                      ..+++...+.
T Consensus       201 l~~I~~~~l~  210 (287)
T CHL00181        201 LLQIAKIMLE  210 (287)
T ss_pred             HHHHHHHHHH
Confidence            9999988773

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=98.36  E-value=1.5e-05  Score=70.41  Aligned_cols=151  Identities=14%  Similarity=0.171  Sum_probs=76.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      .++.++|++|+|||+++..+++.....   ...+.    ... .. .+..+..+..+.....               ...
T Consensus        44 ~~lll~G~~G~GKT~la~~l~~~~~~~---~~~i~----~~~-~~-~~~i~~~l~~~~~~~~---------------~~~   99 (316)
T PHA02544         44 NMLLHSPSPGTGKTTVAKALCNEVGAE---VLFVN----GSD-CR-IDFVRNRLTRFASTVS---------------LTG   99 (316)
T ss_pred             eEEEeeCcCCCCHHHHHHHHHHHhCcc---ceEec----cCc-cc-HHHHHHHHHHHHHhhc---------------ccC
Confidence            466779999999999999998876322   22222    111 11 1122221111111000               112


Q ss_pred             ceEEEEEecCCCh---hhHHHHhcccCCCCCCcEEEEEeCchhHH-Hh-cCCCeEEEecCCChhhhHHHHhhhhcC----
Q 020206           84 KKVLIVFDDVNHP---RQIEFLIGNLDWFASGSRILITARDKQAL-IN-CGVNKIYQIKELVHVDALKLLNQCAFG----  154 (329)
Q Consensus        84 ~~~LlvlDdv~~~---~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~----  154 (329)
                      .+-++|+|+++..   +....+...+.....++.+|+|+...... .. .+....+.++..+.++..+++......    
T Consensus       100 ~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~  179 (316)
T PHA02544        100 GGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGI  179 (316)
T ss_pred             CCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHH
Confidence            3458999999643   22233333333335677888888654211 11 123346777778888777665432100    


Q ss_pred             -CCCCCCchHHHHHHHHHHhcCCch
Q 020206          155 -RDHPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       155 -~~~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                       ........++++..+++...|.-.
T Consensus       180 ~~~~~~~i~~~al~~l~~~~~~d~r  204 (316)
T PHA02544        180 LEAEGVEVDMKVLAALVKKNFPDFR  204 (316)
T ss_pred             HHhcCCCCCHHHHHHHHHhcCCCHH
Confidence             011112234456667766666543

>PRK12377 putative replication protein; Provisional

Probab=98.35  E-value=4e-06  Score=70.67  Aligned_cols=100  Identities=18%  Similarity=0.141  Sum_probs=57.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      .-+.|+|++|+|||+||..+++.+..+...+.++.          ..+++..+-.......        ....+.+.+. 
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~----------~~~l~~~l~~~~~~~~--------~~~~~l~~l~-  162 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVT----------VPDVMSRLHESYDNGQ--------SGEKFLQELC-  162 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE----------HHHHHHHHHHHHhccc--------hHHHHHHHhc-
Confidence            46899999999999999999998876655566655          3345554444332110        1112222232 


Q ss_pred             ceEEEEEecCC----ChhhHHHHhcccCCC-CCCcEEEEEeCch
Q 020206           84 KKVLIVFDDVN----HPRQIEFLIGNLDWF-ASGSRILITARDK  122 (329)
Q Consensus        84 ~~~LlvlDdv~----~~~~~~~l~~~l~~~-~~~~~ilitsr~~  122 (329)
                      +.-||||||+.    +....+.+...+... .+...+||||.-.
T Consensus       163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl~  206 (248)
T PRK12377        163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNLN  206 (248)
T ss_pred             CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence            34499999992    122223333332211 2234577777643

>PRK06871 DNA polymerase III subunit delta'; Validated

Probab=98.34  E-value=3.3e-05  Score=67.68  Aligned_cols=88  Identities=15%  Similarity=0.149  Sum_probs=62.9

Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.=++|+|+++  +.+....++..+.+-+++..+|++|.+. .+++. .+..+.+.+.+++.+++.+.+.... .  .. 
T Consensus       107 ~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~-~--~~-  182 (325)
T PRK06871        107 GNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS-S--AE-  182 (325)
T ss_pred             CceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh-c--cC-
Confidence            44588899996  4567888888888777777777777665 33333 2345789999999999999998764 1  11 


Q ss_pred             CchHHHHHHHHHHhcCCch
Q 020206          160 ASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Pl  178 (329)
                         ...+..+...++|.|.
T Consensus       183 ---~~~~~~~~~l~~g~p~  198 (325)
T PRK06871        183 ---ISEILTALRINYGRPL  198 (325)
T ss_pred             ---hHHHHHHHHHcCCCHH
Confidence               1126667889999996

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=98.33  E-value=9.3e-07  Score=70.92  Aligned_cols=36  Identities=28%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..-+.++|++|+|||.||..+++....+-..+.|+.
T Consensus        47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~   82 (178)
T PF01695_consen   47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT   82 (178)
T ss_dssp             --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred             CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence            456899999999999999999998776555566665

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]

Probab=98.33  E-value=4.3e-05  Score=64.73  Aligned_cols=169  Identities=16%  Similarity=0.104  Sum_probs=93.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhc--CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSK   79 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~   79 (329)
                      +.+...+|||+|.|||+-|..++..+-.  -|+.++.-.+............=...........               .
T Consensus        56 ~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisvvr~Kik~fakl~~~~---------------~  120 (346)
T KOG0989|consen   56 ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISVVREKIKNFAKLTVLL---------------K  120 (346)
T ss_pred             CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccchhhhhcCHHHHhhcc---------------c
Confidence            5688999999999999999999987533  2333333111111111000000000000000000               0


Q ss_pred             hhcC---ce-EEEEEecCCCh--hhHHHHhcccCCCCCCcEEE-EEeCchhHHH-hcCCCeEEEecCCChhhhHHHHhhh
Q 020206           80 RLTR---KK-VLIVFDDVNHP--RQIEFLIGNLDWFASGSRIL-ITARDKQALI-NCGVNKIYQIKELVHVDALKLLNQC  151 (329)
Q Consensus        80 ~~~~---~~-~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~il-itsr~~~~~~-~~~~~~~~~l~~l~~~e~~~ll~~~  151 (329)
                      ...+   .+ -+||||+++..  +.+..+...+.......+++ ||+--..+.. .....+.+..++|..+....-++..
T Consensus       121 ~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~I  200 (346)
T KOG0989|consen  121 RSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKI  200 (346)
T ss_pred             cccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHH
Confidence            0111   12 38999999643  44666655555445555554 4443332111 1233457889999999999999888


Q ss_pred             hcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          152 AFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       152 ~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      +.....  ...+++.+.|+..++|--.--..+...+
T Consensus       201 a~~E~v--~~d~~al~~I~~~S~GdLR~Ait~Lqsl  234 (346)
T KOG0989|consen  201 ASKEGV--DIDDDALKLIAKISDGDLRRAITTLQSL  234 (346)
T ss_pred             HHHhCC--CCCHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence            733332  2446779999999999766544444444

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=98.30  E-value=8.5e-06  Score=73.63  Aligned_cols=149  Identities=13%  Similarity=0.203  Sum_probs=79.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-+.++|++|+|||+||+.+++.....|   +.+. .         .++..    ......     .......+.....
T Consensus       179 pkgvLL~GppGTGKT~LAkalA~~l~~~f---i~i~-~---------s~l~~----k~~ge~-----~~~lr~lf~~A~~  236 (398)
T PTZ00454        179 PRGVLLYGPPGTGKTMLAKAVAHHTTATF---IRVV-G---------SEFVQ----KYLGEG-----PRMVRDVFRLARE  236 (398)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCCCE---EEEe-h---------HHHHH----Hhcchh-----HHHHHHHHHHHHh
Confidence            46789999999999999999998754322   1111 0         01111    110000     0001122222334


Q ss_pred             CceEEEEEecCCCh------------h----hHHHHhcccCCC--CCCcEEEEEeCchhHHHh-----cCCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHP------------R----QIEFLIGNLDWF--ASGSRILITARDKQALIN-----CGVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~------------~----~~~~l~~~l~~~--~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l  139 (329)
                      ..+++|++|+++..            .    .+..++..+...  ..+..+|+||........     ......+.++..
T Consensus       237 ~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P  316 (398)
T PTZ00454        237 NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLP  316 (398)
T ss_pred             cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCc
Confidence            57899999997421            1    122333333211  234567777765432211     134457888888


Q ss_pred             ChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206          140 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P  177 (329)
                      +.++-..+|+....... .++..    ...++..+.|..
T Consensus       317 ~~~~R~~Il~~~~~~~~l~~dvd----~~~la~~t~g~s  351 (398)
T PTZ00454        317 DRRQKRLIFQTITSKMNLSEEVD----LEDFVSRPEKIS  351 (398)
T ss_pred             CHHHHHHHHHHHHhcCCCCcccC----HHHHHHHcCCCC
Confidence            88888888876653221 11212    666777777654

>CHL00176 ftsH cell division protein; Validated

Probab=98.30  E-value=2.7e-05  Score=74.41  Aligned_cols=157  Identities=15%  Similarity=0.130  Sum_probs=85.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-|.++||+|+|||+||+.++......     ++.    ++    ..++...    .....     .......+.....
T Consensus       216 p~gVLL~GPpGTGKT~LAralA~e~~~p-----~i~----is----~s~f~~~----~~g~~-----~~~vr~lF~~A~~  273 (638)
T CHL00176        216 PKGVLLVGPPGTGKTLLAKAIAGEAEVP-----FFS----IS----GSEFVEM----FVGVG-----AARVRDLFKKAKE  273 (638)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCC-----eee----cc----HHHHHHH----hhhhh-----HHHHHHHHHHHhc
Confidence            3468999999999999999998875321     221    10    1111110    00000     0012233444445


Q ss_pred             CceEEEEEecCCCh----------------hhHHHHhcccCCC--CCCcEEEEEeCchhHHHh-----cCCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHP----------------RQIEFLIGNLDWF--ASGSRILITARDKQALIN-----CGVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~----------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l  139 (329)
                      ..+++|+|||++..                ..+..++..+...  ..+..+|.+|........     ......+.++..
T Consensus       274 ~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lP  353 (638)
T CHL00176        274 NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLP  353 (638)
T ss_pred             CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCC
Confidence            67899999999432                1133333332211  224445555554322211     124467889999


Q ss_pred             ChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcC-CchHHHHHH
Q 020206          140 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILG  184 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~  184 (329)
                      +.++-.++++..+....   .........+++.+.| .+.-|..++
T Consensus       354 d~~~R~~IL~~~l~~~~---~~~d~~l~~lA~~t~G~sgaDL~~lv  396 (638)
T CHL00176        354 DREGRLDILKVHARNKK---LSPDVSLELIARRTPGFSGADLANLL  396 (638)
T ss_pred             CHHHHHHHHHHHHhhcc---cchhHHHHHHHhcCCCCCHHHHHHHH
Confidence            99999999988763311   1223347778888887 555555544

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]

Probab=98.29  E-value=1.9e-05  Score=66.18  Aligned_cols=152  Identities=14%  Similarity=0.076  Sum_probs=88.6

Q ss_pred             EeCchhHHHhc--CCCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHH
Q 020206          118 TARDKQALINC--GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVW  195 (329)
Q Consensus       118 tsr~~~~~~~~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~  195 (329)
                      |||.......+  +.....+++-.+.+|..+++.+.+.- -+. ...++.+.+|++...|-|.--.-+.+..+.     +
T Consensus       158 TTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~-l~i-~i~~~~a~eIA~rSRGTPRIAnRLLrRVRD-----f  230 (332)
T COG2255         158 TTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI-LGI-EIDEEAALEIARRSRGTPRIANRLLRRVRD-----F  230 (332)
T ss_pred             ccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH-hCC-CCChHHHHHHHHhccCCcHHHHHHHHHHHH-----H
Confidence            67654222211  34456788889999999999876621 111 233456899999999999643333332221     1


Q ss_pred             HHHHHh--hccCChhhHHHHHHhhhcCCChhhHhHHHhhh-cc-cCccChhHHHHHHHhCCcchhhhHH-HHhhccceee
Q 020206          196 ENAISK--LEMVPQMEIQEVLKISYDGLDDKEKNIFLDIA-CF-LVGEDRDIVTKYLNACEFFATSGIE-VLVDKSLITI  270 (329)
Q Consensus       196 ~~~~~~--l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls-~~-~~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Ll~~  270 (329)
                      ......  +...........+...=..|+...++.+..+. -| .+++..+.++..++.+....++.++ -|.+.|+++.
T Consensus       231 a~V~~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f~GgPVGl~tia~~lge~~~TiEdv~EPyLiq~gfi~R  310 (332)
T COG2255         231 AQVKGDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQFGGGPVGLDTIAAALGEDRDTIEDVIEPYLIQQGFIQR  310 (332)
T ss_pred             HHHhcCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHhCCCCccHHHHHHHhcCchhHHHHHHhHHHHHhchhhh
Confidence            111100  00111122233344444466777777776665 33 3557888888877665555555555 4899999998


Q ss_pred             ecCCce
Q 020206          271 SEYNKI  276 (329)
Q Consensus       271 ~~~~~~  276 (329)
                      ...|+.
T Consensus       311 TpRGR~  316 (332)
T COG2255         311 TPRGRI  316 (332)
T ss_pred             CCCcce
Confidence            888864

>PRK06526 transposase; Provisional

Probab=98.29  E-value=2.3e-06  Score=72.63  Aligned_cols=34  Identities=21%  Similarity=0.164  Sum_probs=26.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      .+-+.|+|++|+|||+||..++.........+.|
T Consensus        98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f  131 (254)
T PRK06526         98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF  131 (254)
T ss_pred             CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh
Confidence            4568999999999999999999876654333444

>PRK06964 DNA polymerase III subunit delta'; Validated

Probab=98.29  E-value=0.00018  Score=63.63  Aligned_cols=90  Identities=16%  Similarity=0.165  Sum_probs=61.5

Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCc-hhHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARD-KQALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~-~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.=++|+|+++  +.+....++..+.+-+++..+|++|.+ ...++. .+..+.+.+.+++.++..+.+....    .+.
T Consensus       132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~~----~~~  207 (342)
T PRK06964        132 GARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQG----VAD  207 (342)
T ss_pred             CceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHcC----CCh
Confidence            34488889985  567788888888776777766665555 444433 3455789999999999999997652    111


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALKIL  183 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~  183 (329)
                            ...+...++|.|.....+
T Consensus       208 ------~~~~l~~~~Gsp~~Al~~  225 (342)
T PRK06964        208 ------ADALLAEAGGAPLAALAL  225 (342)
T ss_pred             ------HHHHHHHcCCCHHHHHHH
Confidence                  233577889999744433

>PRK09183 transposase/IS protein; Provisional

Probab=98.29  E-value=4.9e-06  Score=71.00  Aligned_cols=34  Identities=29%  Similarity=0.223  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ..+.|+|++|+|||+|+..++.........+.++
T Consensus       103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~  136 (259)
T PRK09183        103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT  136 (259)
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            4688999999999999999988755443334443

>PRK08058 DNA polymerase III subunit delta'; Validated

Probab=98.25  E-value=8.4e-05  Score=65.83  Aligned_cols=68  Identities=12%  Similarity=0.198  Sum_probs=48.4

Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhh
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQC  151 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~  151 (329)
                      .+-++|+|+++  +.+....++..+.+.+++..+|++|.+.. +... .+....+++.+++.++..+.+...
T Consensus       110 ~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~~  181 (329)
T PRK08058        110 NKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQEE  181 (329)
T ss_pred             CceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHHc
Confidence            44589999985  44567778888877677777777776543 2222 245578999999999998888654

>PRK07399 DNA polymerase III subunit delta'; Validated

Probab=98.25  E-value=0.00021  Score=62.66  Aligned_cols=173  Identities=13%  Similarity=0.056  Sum_probs=95.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc---------------CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCC-C
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR---------------RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGN-M   66 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~   66 (329)
                      ++...++|+.|+||+++|..+++.+-.               .++...|+.............+.    +...+.... .
T Consensus        26 ~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~----~~~~~~~~~~~  101 (314)
T PRK07399         26 APAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASE----AEEAGLKRKAP  101 (314)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhh----hhhcccccccc
Confidence            467899999999999999999987522               23444554311000000000000    000000000 0


Q ss_pred             CCCCCcchHHHHhhh-----cCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEec
Q 020206           67 NKFPNIGLNFQSKRL-----TRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIK  137 (329)
Q Consensus        67 ~~~~~~~~~~l~~~~-----~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~  137 (329)
                      ..+.-..+..+.+.+     .+.+-++|+|+++  +......++..+.+.+ ...+|++|.+. ..... .+..+.+++.
T Consensus       102 ~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~  180 (314)
T PRK07399        102 PQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAPSPESLLPTIVSRCQIIPFY  180 (314)
T ss_pred             ccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEECChHhCcHHHHhhceEEecC
Confidence            011100112222222     2345589999985  4456777777776655 55555555443 33332 2455789999


Q ss_pred             CCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          138 ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       138 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                      +++.++..+.+...... ....    .....++..++|.|........
T Consensus       181 ~l~~~~~~~~L~~~~~~-~~~~----~~~~~l~~~a~Gs~~~al~~l~  223 (314)
T PRK07399        181 RLSDEQLEQVLKRLGDE-EILN----INFPELLALAQGSPGAAIANIE  223 (314)
T ss_pred             CCCHHHHHHHHHHhhcc-ccch----hHHHHHHHHcCCCHHHHHHHHH
Confidence            99999999999876521 1111    1146789999999976655443

>PRK07993 DNA polymerase III subunit delta'; Validated

Probab=98.24  E-value=4.2e-05  Score=67.64  Aligned_cols=90  Identities=13%  Similarity=0.142  Sum_probs=62.9

Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +..=++|+|+++  +.+....++..+.+-+++..+|++|.+. .++.. .+..+.+.+.+++.+++.+.+.... +  .+
T Consensus       107 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~~-~--~~  183 (334)
T PRK07993        107 GGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSREV-T--MS  183 (334)
T ss_pred             CCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHcc-C--CC
Confidence            344589999885  5667888888888766777777666654 34433 3445678899999999999886542 1  11


Q ss_pred             CCchHHHHHHHHHHhcCCchH
Q 020206          159 DASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Pla  179 (329)
                          ++.+..++..++|.|..
T Consensus       184 ----~~~a~~~~~la~G~~~~  200 (334)
T PRK07993        184 ----QDALLAALRLSAGAPGA  200 (334)
T ss_pred             ----HHHHHHHHHHcCCCHHH
Confidence                22367789999999963

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.24  E-value=5.7e-06  Score=63.36  Aligned_cols=36  Identities=25%  Similarity=0.254  Sum_probs=28.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+.+.|+|++|+||||+++.++..+......++++.
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~   37 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYID   37 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEEC
Confidence            467899999999999999999998776543344443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>CHL00195 ycf46 Ycf46; Provisional

Probab=98.23  E-value=8.1e-06  Score=75.52  Aligned_cols=153  Identities=14%  Similarity=0.060  Sum_probs=79.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-|.++||+|+|||.+|+.++....-.    ++..+...         +..    ...+.     ........+...-.
T Consensus       259 pkGILL~GPpGTGKTllAkaiA~e~~~~----~~~l~~~~---------l~~----~~vGe-----se~~l~~~f~~A~~  316 (489)
T CHL00195        259 PRGLLLVGIQGTGKSLTAKAIANDWQLP----LLRLDVGK---------LFG----GIVGE-----SESRMRQMIRIAEA  316 (489)
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhCCC----EEEEEhHH---------hcc----cccCh-----HHHHHHHHHHHHHh
Confidence            3568999999999999999999876432    12211111         000    00000     00001112222223


Q ss_pred             CceEEEEEecCCCh----------h----hHHHHhcccCCCCCCcEEEEEeCchhHH-----HhcCCCeEEEecCCChhh
Q 020206           83 RKKVLIVFDDVNHP----------R----QIEFLIGNLDWFASGSRILITARDKQAL-----INCGVNKIYQIKELVHVD  143 (329)
Q Consensus        83 ~~~~LlvlDdv~~~----------~----~~~~l~~~l~~~~~~~~ilitsr~~~~~-----~~~~~~~~~~l~~l~~~e  143 (329)
                      ..+++|++|+++..          .    .+..++..+.....+..+|.||......     +.......+.++..+.++
T Consensus       317 ~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~e  396 (489)
T CHL00195        317 LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEE  396 (489)
T ss_pred             cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHH
Confidence            46899999998421          0    1222333332222333445566544221     112345678888889888


Q ss_pred             hHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch
Q 020206          144 ALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       144 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      -.++|+.+..... +........+.+++.+.|..-
T Consensus       397 R~~Il~~~l~~~~-~~~~~~~dl~~La~~T~GfSG  430 (489)
T CHL00195        397 REKIFKIHLQKFR-PKSWKKYDIKKLSKLSNKFSG  430 (489)
T ss_pred             HHHHHHHHHhhcC-CCcccccCHHHHHhhcCCCCH
Confidence            8888887763321 111111226777777777653

>PRK06090 DNA polymerase III subunit delta'; Validated

Probab=98.23  E-value=0.00021  Score=62.59  Aligned_cols=90  Identities=14%  Similarity=0.182  Sum_probs=63.4

Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      ..=++|+|+++  +.+....++..+.+-+++..+|++|.+. ..++. .+..+.+.+.+++.+++.+.+....     .+
T Consensus       108 ~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~~-----~~  182 (319)
T PRK06090        108 GYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQG-----IT  182 (319)
T ss_pred             CceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHcC-----Cc
Confidence            34488999985  4567888888888767777777666654 33333 3455688999999999999997542     11


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALKIL  183 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~  183 (329)
                      .     ...+...++|.|+....+
T Consensus       183 ~-----~~~~l~l~~G~p~~A~~~  201 (319)
T PRK06090        183 V-----PAYALKLNMGSPLKTLAM  201 (319)
T ss_pred             h-----HHHHHHHcCCCHHHHHHH
Confidence            1     346789999999865444

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.23  E-value=2.6e-06  Score=71.89  Aligned_cols=91  Identities=14%  Similarity=0.150  Sum_probs=55.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc-CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCC-CCCCc-----chH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMN-KFPNI-----GLN   75 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~-----~~~   75 (329)
                      ...+.|.|++|+|||||++.+++.... +|+..+|+...++  ....+.++++.+...+....... .....     ...
T Consensus        16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~e--r~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~   93 (249)
T cd01128          16 GQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDE--RPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLE   93 (249)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccC--CCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHH
Confidence            356889999999999999999997654 5777878773222  12467788887733322221110 00000     111


Q ss_pred             HHHh-hhcCceEEEEEecCCC
Q 020206           76 FQSK-RLTRKKVLIVFDDVNH   95 (329)
Q Consensus        76 ~l~~-~~~~~~~LlvlDdv~~   95 (329)
                      .... ...++++++++|++..
T Consensus        94 ~a~~~~~~G~~vll~iDei~r  114 (249)
T cd01128          94 KAKRLVEHGKDVVILLDSITR  114 (249)
T ss_pred             HHHHHHHCCCCEEEEEECHHH
Confidence            1111 1347899999999943

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=98.22  E-value=1.7e-06  Score=70.06  Aligned_cols=29  Identities=28%  Similarity=0.468  Sum_probs=21.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+.+.|+|++|+|||+|++.+...+...
T Consensus        23 ~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   23 SPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             ----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            46889999999999999999999987766

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=98.18  E-value=4.1e-05  Score=75.14  Aligned_cols=150  Identities=14%  Similarity=0.083  Sum_probs=78.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcC----ChHHHHHHHHHHHhcCCCCCCCCCcc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETG----KLADLRKELLSTLLNDGNMNKFPNIG   73 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~----~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (329)
                      .-+.++|++|+|||++|+.+++++....      ...+|..+........    .+..-                    .
T Consensus       204 ~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~--------------------l  263 (731)
T TIGR02639       204 NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEER--------------------L  263 (731)
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHH--------------------H
Confidence            4578999999999999999999875431      2334443221111100    01111                    1


Q ss_pred             hHHHHhhhcCceEEEEEecCCCh-----------hhHHHHhcccCCCCCCcEEEEEeCchhHH------Hh-cCCCeEEE
Q 020206           74 LNFQSKRLTRKKVLIVFDDVNHP-----------RQIEFLIGNLDWFASGSRILITARDKQAL------IN-CGVNKIYQ  135 (329)
Q Consensus        74 ~~~l~~~~~~~~~LlvlDdv~~~-----------~~~~~l~~~l~~~~~~~~ilitsr~~~~~------~~-~~~~~~~~  135 (329)
                      ...+.+.....+++|++|+++..           +....+.+.+.  .....+|-+|..+...      .. .+..+.+.
T Consensus       264 ~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~--~g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~  341 (731)
T TIGR02639       264 KAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS--SGKLRCIGSTTYEEYKNHFEKDRALSRRFQKID  341 (731)
T ss_pred             HHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh--CCCeEEEEecCHHHHHHHhhhhHHHHHhCceEE
Confidence            11111111235789999998421           11222333332  2233445444432111      01 12345789


Q ss_pred             ecCCChhhhHHHHhhhhcC--CCCCCCchHHHHHHHHHHhcC
Q 020206          136 IKELVHVDALKLLNQCAFG--RDHPDASYIELTHEAIKYAQG  175 (329)
Q Consensus       136 l~~l~~~e~~~ll~~~~~~--~~~~~~~~~~~~~~i~~~~~g  175 (329)
                      +++++.++..++++.....  ........+++...+++.+..
T Consensus       342 v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r  383 (731)
T TIGR02639       342 VGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR  383 (731)
T ss_pred             eCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence            9999999999999864411  111223445556666666643

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=98.17  E-value=5.6e-05  Score=74.96  Aligned_cols=154  Identities=14%  Similarity=0.125  Sum_probs=81.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhh----cCChHHHHHHHHHHHhcCCCCCCCCCcc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEE----TGKLADLRKELLSTLLNDGNMNKFPNIG   73 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (329)
                      .-++++|++|+|||++|+.+++++....      ...+|..+.+....    ...+..-++.++..              
T Consensus       209 ~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e--------------  274 (852)
T TIGR03345       209 NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDE--------------  274 (852)
T ss_pred             CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHH--------------
Confidence            3467999999999999999999875432      12334332222211    01111111111111              


Q ss_pred             hHHHHhhhcCceEEEEEecCCCh---------hhHH-HHhcccCCCCCCcEEEEEeCchhHHH-------hcCCCeEEEe
Q 020206           74 LNFQSKRLTRKKVLIVFDDVNHP---------RQIE-FLIGNLDWFASGSRILITARDKQALI-------NCGVNKIYQI  136 (329)
Q Consensus        74 ~~~l~~~~~~~~~LlvlDdv~~~---------~~~~-~l~~~l~~~~~~~~ilitsr~~~~~~-------~~~~~~~~~l  136 (329)
                         ..+  .+.+++|++|+++..         .+.. .+.+.+.  ....++|-+|.......       ..+..+.+.+
T Consensus       275 ---~~~--~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~--~G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v  347 (852)
T TIGR03345       275 ---VKA--SPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA--RGELRTIAATTWAEYKKYFEKDPALTRRFQVVKV  347 (852)
T ss_pred             ---HHh--cCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh--CCCeEEEEecCHHHHhhhhhccHHHHHhCeEEEe
Confidence               111  246789999998422         1111 2333332  22345555555421110       1134468999


Q ss_pred             cCCChhhhHHHHhhhhcC--CCCCCCchHHHHHHHHHHhcCCch
Q 020206          137 KELVHVDALKLLNQCAFG--RDHPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       137 ~~l~~~e~~~ll~~~~~~--~~~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      ++++.++..++++.....  ........+++...+++.+.+++-
T Consensus       348 ~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~  391 (852)
T TIGR03345       348 EEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIP  391 (852)
T ss_pred             CCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccc
Confidence            999999999997544311  111223456667777777776543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=98.17  E-value=1.1e-05  Score=68.45  Aligned_cols=71  Identities=24%  Similarity=0.241  Sum_probs=46.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      .-+.++|++|+|||.||..+++.+..+.-.+.++.          ..+++..+....... .       ....+.+.+..
T Consensus       106 ~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~----------~~el~~~Lk~~~~~~-~-------~~~~l~~~l~~  167 (254)
T COG1484         106 ENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFIT----------APDLLSKLKAAFDEG-R-------LEEKLLRELKK  167 (254)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHHhcC-c-------hHHHHHHHhhc
Confidence            35789999999999999999999884434455544          556666665555431 1       12223332332


Q ss_pred             ceEEEEEecC
Q 020206           84 KKVLIVFDDV   93 (329)
Q Consensus        84 ~~~LlvlDdv   93 (329)
                      - =||||||+
T Consensus       168 ~-dlLIiDDl  176 (254)
T COG1484         168 V-DLLIIDDI  176 (254)
T ss_pred             C-CEEEEecc
Confidence            2 39999999

>PRK07952 DNA replication protein DnaC; Validated

Probab=98.17  E-value=1.6e-05  Score=66.94  Aligned_cols=73  Identities=21%  Similarity=0.261  Sum_probs=45.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      ..+.++|++|+|||+|+..+++.+......++++.          ..++...+-..+....       .....+.+.+. 
T Consensus       100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it----------~~~l~~~l~~~~~~~~-------~~~~~~l~~l~-  161 (244)
T PRK07952        100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIIT----------VADIMSAMKDTFSNSE-------TSEEQLLNDLS-  161 (244)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE----------HHHHHHHHHHHHhhcc-------ccHHHHHHHhc-
Confidence            46899999999999999999998876655555553          3444444433332110       11222333343 


Q ss_pred             ceEEEEEecCC
Q 020206           84 KKVLIVFDDVN   94 (329)
Q Consensus        84 ~~~LlvlDdv~   94 (329)
                      +.-+|||||+.
T Consensus       162 ~~dlLvIDDig  172 (244)
T PRK07952        162 NVDLLVIDEIG  172 (244)
T ss_pred             cCCEEEEeCCC
Confidence            33388899993

>PRK08939 primosomal protein DnaI; Reviewed

Probab=98.16  E-value=1.7e-05  Score=69.16  Aligned_cols=100  Identities=15%  Similarity=0.242  Sum_probs=57.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+-+.|+|++|+|||.|+..+++.+..+...+.++.          ..+++..+-......         ......+.+.
T Consensus       156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~----------~~~l~~~lk~~~~~~---------~~~~~l~~l~  216 (306)
T PRK08939        156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH----------FPEFIRELKNSISDG---------SVKEKIDAVK  216 (306)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE----------HHHHHHHHHHHHhcC---------cHHHHHHHhc
Confidence            356889999999999999999998876555566655          234444444443211         1112222333


Q ss_pred             CceEEEEEecCC--ChhhHH--HHhcccC-CC-CCCcEEEEEeCch
Q 020206           83 RKKVLIVFDDVN--HPRQIE--FLIGNLD-WF-ASGSRILITARDK  122 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~--~l~~~l~-~~-~~~~~ilitsr~~  122 (329)
                       +.-||||||+.  ....|.  .++..+. .. ..+..+|+||.-.
T Consensus       217 -~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~  261 (306)
T PRK08939        217 -EAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFD  261 (306)
T ss_pred             -CCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCC
Confidence             33499999993  222221  2333321 11 2355677777643

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=0.00017  Score=67.74  Aligned_cols=162  Identities=16%  Similarity=0.157  Sum_probs=87.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ...|.|.|+.|+|||+|++.++..+.......+-+.++..... ..+.++...+                 .+.+...+.
T Consensus       431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~-~~~e~iQk~l-----------------~~vfse~~~  492 (952)
T KOG0735|consen  431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDG-SSLEKIQKFL-----------------NNVFSEALW  492 (952)
T ss_pred             cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccc-hhHHHHHHHH-----------------HHHHHHHHh
Confidence            3568999999999999999999988755433333332222222 2244444333                 222344455


Q ss_pred             CceEEEEEecCCCh---------------hhHHHHhccc-CC-CCCCcE--EEEEeCchhHHHh-c----CCCeEEEecC
Q 020206           83 RKKVLIVFDDVNHP---------------RQIEFLIGNL-DW-FASGSR--ILITARDKQALIN-C----GVNKIYQIKE  138 (329)
Q Consensus        83 ~~~~LlvlDdv~~~---------------~~~~~l~~~l-~~-~~~~~~--ilitsr~~~~~~~-~----~~~~~~~l~~  138 (329)
                      -.+-+|||||++..               ..+..++..+ .. ...+.+  +|.|......... +    -......|++
T Consensus       493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a  572 (952)
T KOG0735|consen  493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA  572 (952)
T ss_pred             hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence            67889999999321               1122222111 10 122333  3444443322111 1    1234567888


Q ss_pred             CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCC-chHHHHHH
Q 020206          139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILG  184 (329)
Q Consensus       139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~  184 (329)
                      +...+=.+++........ .+ ...+.++.+..+|+|. |.-+.++.
T Consensus       573 p~~~~R~~IL~~~~s~~~-~~-~~~~dLd~ls~~TEGy~~~DL~ifV  617 (952)
T KOG0735|consen  573 PAVTRRKEILTTIFSKNL-SD-ITMDDLDFLSVKTEGYLATDLVIFV  617 (952)
T ss_pred             cchhHHHHHHHHHHHhhh-hh-hhhHHHHHHHHhcCCccchhHHHHH
Confidence            887777777766552222 22 2234466688999884 55565554

>PRK06835 DNA replication protein DnaC; Validated

Probab=98.15  E-value=1.3e-05  Score=70.51  Aligned_cols=35  Identities=20%  Similarity=0.293  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .-+.++|++|+|||.|+..+++.+.++...++|+.
T Consensus       184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t  218 (329)
T PRK06835        184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRT  218 (329)
T ss_pred             CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence            56899999999999999999998876655666665

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=98.14  E-value=7.4e-05  Score=65.60  Aligned_cols=150  Identities=19%  Similarity=0.207  Sum_probs=79.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh--cCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE--TGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSK   79 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~   79 (329)
                      -++.+.||||+|+|||.+|+.++....-.    +...+..++..  ....+..++++....                 .+
T Consensus       147 ~PlgllL~GPPGcGKTllAraiA~elg~~----~i~vsa~eL~sk~vGEsEk~IR~~F~~A-----------------~~  205 (413)
T PLN00020        147 VPLILGIWGGKGQGKSFQCELVFKKMGIE----PIVMSAGELESENAGEPGKLIRQRYREA-----------------AD  205 (413)
T ss_pred             CCeEEEeeCCCCCCHHHHHHHHHHHcCCC----eEEEEHHHhhcCcCCcHHHHHHHHHHHH-----------------HH
Confidence            35788999999999999999999986543    22222222211  122333333332221                 11


Q ss_pred             h--hcCceEEEEEecCCC-------h-----hhH--HHHhcccC--------------CCCCCcEEEEEeCchhHHHh--
Q 020206           80 R--LTRKKVLIVFDDVNH-------P-----RQI--EFLIGNLD--------------WFASGSRILITARDKQALIN--  127 (329)
Q Consensus        80 ~--~~~~~~LlvlDdv~~-------~-----~~~--~~l~~~l~--------------~~~~~~~ilitsr~~~~~~~--  127 (329)
                      .  -+.++++|+||+++.       .     ..+  ..|+..+.              ...++..||.||.....+..  
T Consensus       206 ~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpAL  285 (413)
T PLN00020        206 IIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPL  285 (413)
T ss_pred             HhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhH
Confidence            1  245799999999842       0     111  23332211              11234566777765532221  


Q ss_pred             cC---CCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch
Q 020206          128 CG---VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       128 ~~---~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      .+   ....  +...+.++=.++++........+    ...+.+|+..+-|-|+
T Consensus       286 lRpGRfDk~--i~lPd~e~R~eIL~~~~r~~~l~----~~dv~~Lv~~f~gq~~  333 (413)
T PLN00020        286 IRDGRMEKF--YWAPTREDRIGVVHGIFRDDGVS----REDVVKLVDTFPGQPL  333 (413)
T ss_pred             cCCCCCCce--eCCCCHHHHHHHHHHHhccCCCC----HHHHHHHHHcCCCCCc
Confidence            11   1122  33446666667777665332222    2447778888877775

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=98.13  E-value=1.8e-05  Score=72.14  Aligned_cols=150  Identities=15%  Similarity=0.170  Sum_probs=80.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-|.|+|++|+|||++|+.+++.....|-   .+. ..         ++..    ......     .......+.....
T Consensus       217 p~gVLL~GPPGTGKT~LAraIA~el~~~fi---~V~-~s---------eL~~----k~~Ge~-----~~~vr~lF~~A~~  274 (438)
T PTZ00361        217 PKGVILYGPPGTGKTLLAKAVANETSATFL---RVV-GS---------ELIQ----KYLGDG-----PKLVRELFRVAEE  274 (438)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhhCCCEE---EEe-cc---------hhhh----hhcchH-----HHHHHHHHHHHHh
Confidence            456889999999999999999998654331   111 00         1110    000000     0001112222233


Q ss_pred             CceEEEEEecCCCh-------------h---hHHHHhcccCC--CCCCcEEEEEeCchhHHHh-----cCCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHP-------------R---QIEFLIGNLDW--FASGSRILITARDKQALIN-----CGVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-------------~---~~~~l~~~l~~--~~~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l  139 (329)
                      ..+++|+||+++..             +   .+..++..+..  ...+..||+||........     ......+.++..
T Consensus       275 ~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~P  354 (438)
T PTZ00361        275 NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNP  354 (438)
T ss_pred             CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCC
Confidence            56789999997321             0   12223322221  1235567777765533222     123457889999


Q ss_pred             ChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch
Q 020206          140 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      +.++-.++|..+...-. ..+..    ...++..+.|.--
T Consensus       355 d~~~R~~Il~~~~~k~~l~~dvd----l~~la~~t~g~sg  390 (438)
T PTZ00361        355 DEKTKRRIFEIHTSKMTLAEDVD----LEEFIMAKDELSG  390 (438)
T ss_pred             CHHHHHHHHHHHHhcCCCCcCcC----HHHHHHhcCCCCH
Confidence            99999999987653221 11212    5667777766544

>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH

Probab=98.12  E-value=6.8e-05  Score=70.36  Aligned_cols=156  Identities=14%  Similarity=0.138  Sum_probs=81.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +-+.++||+|+|||+||+.++......    ++..         +..++...    .....     .......+......
T Consensus        89 ~giLL~GppGtGKT~la~alA~~~~~~----~~~i---------~~~~~~~~----~~g~~-----~~~l~~~f~~a~~~  146 (495)
T TIGR01241        89 KGVLLVGPPGTGKTLLAKAVAGEAGVP----FFSI---------SGSDFVEM----FVGVG-----ASRVRDLFEQAKKN  146 (495)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCCC----eeec---------cHHHHHHH----Hhccc-----HHHHHHHHHHHHhc
Confidence            458899999999999999998875321    1111         11111111    00000     00112223333345


Q ss_pred             ceEEEEEecCCCh----------------hhHHHHhcccCCC--CCCcEEEEEeCchhHH-----HhcCCCeEEEecCCC
Q 020206           84 KKVLIVFDDVNHP----------------RQIEFLIGNLDWF--ASGSRILITARDKQAL-----INCGVNKIYQIKELV  140 (329)
Q Consensus        84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~-----~~~~~~~~~~l~~l~  140 (329)
                      .+++|+|||++..                ..+..++..+...  ..+..||.||......     ........+.++..+
T Consensus       147 ~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd  226 (495)
T TIGR01241       147 APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD  226 (495)
T ss_pred             CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC
Confidence            6789999999431                1122333332211  1233444455443211     111344678888889


Q ss_pred             hhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCC-chHHHHHH
Q 020206          141 HVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILG  184 (329)
Q Consensus       141 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~  184 (329)
                      .++-.+++...........   ......+++.+.|. +..|..++
T Consensus       227 ~~~R~~il~~~l~~~~~~~---~~~l~~la~~t~G~sgadl~~l~  268 (495)
T TIGR01241       227 IKGREEILKVHAKNKKLAP---DVDLKAVARRTPGFSGADLANLL  268 (495)
T ss_pred             HHHHHHHHHHHHhcCCCCc---chhHHHHHHhCCCCCHHHHHHHH
Confidence            8888888887763322211   12266788888874 45555544

HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.

>PRK09376 rho transcription termination factor Rho; Provisional

Probab=98.11  E-value=5.9e-06  Score=73.15  Aligned_cols=88  Identities=14%  Similarity=0.165  Sum_probs=53.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc-CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-------chH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR-RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-------GLN   75 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~   75 (329)
                      ....|+|++|+|||||++++++.+.. +|+..+|+...++.  .....++++.+...+... ..+.....       ...
T Consensus       170 QR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER--~~EVtdiqrsIlg~vv~s-t~d~~~~~~~~~a~~~ie  246 (416)
T PRK09376        170 QRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDER--PEEVTDMQRSVKGEVVAS-TFDEPAERHVQVAEMVIE  246 (416)
T ss_pred             ceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCc--hhHHHHHHHHhcCcEEEE-CCCCCHHHHHHHHHHHHH
Confidence            34678899999999999999997654 58888898844432  125666777665321111 11111111       111


Q ss_pred             HHHh-hhcCceEEEEEecCC
Q 020206           76 FQSK-RLTRKKVLIVFDDVN   94 (329)
Q Consensus        76 ~l~~-~~~~~~~LlvlDdv~   94 (329)
                      .-.. ...+++++|++|++.
T Consensus       247 ~Ae~~~e~G~dVlL~iDsIt  266 (416)
T PRK09376        247 KAKRLVEHGKDVVILLDSIT  266 (416)
T ss_pred             HHHHHHHcCCCEEEEEEChH
Confidence            1111 135689999999994

>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=98.11  E-value=1.1e-05  Score=68.65  Aligned_cols=35  Identities=23%  Similarity=0.344  Sum_probs=27.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH----hcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI----SRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~----~~~~~~~~~~   37 (329)
                      .|+|.++||||.|||+|++.+|+.+    .++|.....+
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~li  215 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLI  215 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEE
Confidence            5899999999999999999999975    3445544443

>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]

Probab=98.11  E-value=4e-05  Score=70.64  Aligned_cols=171  Identities=15%  Similarity=0.087  Sum_probs=103.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcCC---CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh-
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRRF---EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL-   81 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~-   81 (329)
                      -..+|+.|+||||+|+-+++.+.-.-   ...|-.+............+++.           -+...+..++.+++.. 
T Consensus        41 YlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~~~DviE-----------iDaASn~gVddiR~i~e  109 (515)
T COG2812          41 YLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGSLIDVIE-----------IDAASNTGVDDIREIIE  109 (515)
T ss_pred             hhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCCcccchh-----------hhhhhccChHHHHHHHH
Confidence            45789999999999999998653221   11111110000001111222221           0011111333333322 


Q ss_pred             -------cCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh--HHHhcCCCeEEEecCCChhhhHHHHhh
Q 020206           82 -------TRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ--ALINCGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        82 -------~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~--~~~~~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                             .++.=+.|+|+|+  ....+..++..+...+....+|+.|++..  ..+.....+.+.++.++.++....+..
T Consensus       110 ~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~  189 (515)
T COG2812         110 KVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEEIAKHLAA  189 (515)
T ss_pred             HhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCchhhhhccccccccCCCHHHHHHHHHH
Confidence                   2234489999995  56779999999988788888888777663  223345667899999999999999988


Q ss_pred             hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC
Q 020206          151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR  189 (329)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~  189 (329)
                      .+....  -...++++..|.+..+|...-...+..++..
T Consensus       190 i~~~E~--I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~  226 (515)
T COG2812         190 ILDKEG--INIEEDALSLIARAAEGSLRDALSLLDQAIA  226 (515)
T ss_pred             HHHhcC--CccCHHHHHHHHHHcCCChhhHHHHHHHHHH
Confidence            873222  2345677888999999977655555444433

>PRK04132 replication factor C small subunit; Provisional

Probab=98.08  E-value=0.00022  Score=69.87  Aligned_cols=160  Identities=14%  Similarity=0.121  Sum_probs=95.7

Q ss_pred             EEc--CCCCcHHHHHHHHHHHH-hcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCc
Q 020206            8 IWG--IGGVGKTAIAGAFFSKI-SRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRK   84 (329)
Q Consensus         8 I~G--~~GiGKTtLa~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~   84 (329)
                      +.|  |.++||||+|..+++.+ .+.+...+.-.+.   +..... +.++.+...+....+.              ...+
T Consensus       569 ~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNA---Sd~rgi-d~IR~iIk~~a~~~~~--------------~~~~  630 (846)
T PRK04132        569 IGGNLPTVLHNTTAALALARELFGENWRHNFLELNA---SDERGI-NVIREKVKEFARTKPI--------------GGAS  630 (846)
T ss_pred             hcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeC---CCcccH-HHHHHHHHHHHhcCCc--------------CCCC
Confidence            457  88999999999999876 3333332332222   111122 2333433332211110              0113


Q ss_pred             eEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCC
Q 020206           85 KVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDA  160 (329)
Q Consensus        85 ~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~  160 (329)
                      .-++|+|+++.  .+....++..+...+..+++|+++.+.. +... .+..+.+.+.+++.++....+...+.....  .
T Consensus       631 ~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi--~  708 (846)
T PRK04132        631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL--E  708 (846)
T ss_pred             CEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC--C
Confidence            46999999964  3456666666655456777777666552 2222 234578999999999999888876632221  1


Q ss_pred             chHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          161 SYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       161 ~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ..++.+..|+..++|.+.....+...+
T Consensus       709 i~~e~L~~Ia~~s~GDlR~AIn~Lq~~  735 (846)
T PRK04132        709 LTEEGLQAILYIAEGDMRRAINILQAA  735 (846)
T ss_pred             CCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            235679999999999997655554433

>TIGR00767 rho transcription termination factor Rho

Probab=98.07  E-value=1.2e-05  Score=71.53  Aligned_cols=91  Identities=14%  Similarity=0.162  Sum_probs=57.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCC-c-----chHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPN-I-----GLNF   76 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~-----~~~~   76 (329)
                      ..+.|+|++|+|||||++.+++.+..+ |+..+|+...++  ....+.++++.+...+........... .     ..+.
T Consensus       169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgE--R~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~  246 (415)
T TIGR00767       169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDE--RPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEK  246 (415)
T ss_pred             CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCC--CCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHH
Confidence            468899999999999999999987655 777888873322  124677888887543322221111111 0     1111


Q ss_pred             HHh-hhcCceEEEEEecCCCh
Q 020206           77 QSK-RLTRKKVLIVFDDVNHP   96 (329)
Q Consensus        77 l~~-~~~~~~~LlvlDdv~~~   96 (329)
                      ... ...+++++|++|++...
T Consensus       247 Ae~~~~~GkdVVLlIDEitR~  267 (415)
T TIGR00767       247 AKRLVEHKKDVVILLDSITRL  267 (415)
T ss_pred             HHHHHHcCCCeEEEEEChhHH
Confidence            111 13578999999999543

Members of this family differ in the specificity of RNA binding.

>PRK06921 hypothetical protein; Provisional

Probab=98.06  E-value=2e-05  Score=67.50  Aligned_cols=36  Identities=19%  Similarity=0.235  Sum_probs=29.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~   38 (329)
                      ..-+.++|++|+|||.|+..+++.+.++ ...++|+.
T Consensus       117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~  153 (266)
T PRK06921        117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP  153 (266)
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE
Confidence            4568999999999999999999988765 44555655

>PRK08699 DNA polymerase III subunit delta'; Validated

Probab=98.06  E-value=0.00017  Score=63.62  Aligned_cols=84  Identities=13%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             EEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCCCc
Q 020206           86 VLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPDAS  161 (329)
Q Consensus        86 ~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~  161 (329)
                      -++|+|+++  +.+....++..+.....+..+|++|.+.. +... ....+.+.+.+++.+++.+.+.+..     ....
T Consensus       115 kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~~-----~~~~  189 (325)
T PRK08699        115 RVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRERG-----VAEP  189 (325)
T ss_pred             eEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhcC-----CCcH
Confidence            355668874  45556666666554445666777777753 2222 2345678899999999999987542     1111


Q ss_pred             hHHHHHHHHHHhcCCchH
Q 020206          162 YIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       162 ~~~~~~~i~~~~~g~Pla  179 (329)
                          .. ....++|.|+.
T Consensus       190 ----~~-~l~~~~g~p~~  202 (325)
T PRK08699        190 ----EE-RLAFHSGAPLF  202 (325)
T ss_pred             ----HH-HHHHhCCChhh
Confidence                11 23567898854

>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=2.6e-05  Score=73.22  Aligned_cols=137  Identities=12%  Similarity=0.131  Sum_probs=73.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      +.++++++||||+|||+|++.+|+...++|-...    ++++....   ++     +........ ..+.-.+..+.+ .
T Consensus       349 kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~s----LGGvrDEA---EI-----RGHRRTYIG-amPGrIiQ~mkk-a  414 (782)
T COG0466         349 KGPILCLVGPPGVGKTSLGKSIAKALGRKFVRIS----LGGVRDEA---EI-----RGHRRTYIG-AMPGKIIQGMKK-A  414 (782)
T ss_pred             CCcEEEEECCCCCCchhHHHHHHHHhCCCEEEEe----cCccccHH---Hh-----ccccccccc-cCChHHHHHHHH-h
Confidence            3479999999999999999999999877653222    22222111   00     011000000 111112222332 3


Q ss_pred             cCceEEEEEecCCCh------------------hhHHHHhcccCCCCC-CcEE-EEEeCch-h--HHHhcCCCeEEEecC
Q 020206           82 TRKKVLIVFDDVNHP------------------RQIEFLIGNLDWFAS-GSRI-LITARDK-Q--ALINCGVNKIYQIKE  138 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~------------------~~~~~l~~~l~~~~~-~~~i-litsr~~-~--~~~~~~~~~~~~l~~  138 (329)
                      .-++-+++||+++..                  ++-..|.....+..- =+.| .|+|-|. .  ..+..+....+++.+
T Consensus       415 ~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsg  494 (782)
T COG0466         415 GVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSG  494 (782)
T ss_pred             CCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcceeeeeecC
Confidence            345669999999431                  111111111111111 1223 3444433 2  223345677899999


Q ss_pred             CChhhhHHHHhhhh
Q 020206          139 LVHVDALKLLNQCA  152 (329)
Q Consensus       139 l~~~e~~~ll~~~~  152 (329)
                      .+++|-.++-.+++
T Consensus       495 Yt~~EKl~IAk~~L  508 (782)
T COG0466         495 YTEDEKLEIAKRHL  508 (782)
T ss_pred             CChHHHHHHHHHhc
Confidence            99999999988776

>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function

Probab=98.02  E-value=6.3e-05  Score=62.36  Aligned_cols=28  Identities=21%  Similarity=0.523  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      .-|.++|..|+|||++++.+...+..+-
T Consensus        53 nnvLL~G~rGtGKSSlVkall~~y~~~G   80 (249)
T PF05673_consen   53 NNVLLWGARGTGKSSLVKALLNEYADQG   80 (249)
T ss_pred             cceEEecCCCCCHHHHHHHHHHHHhhcC
Confidence            4578999999999999999999887655

>CHL00095 clpC Clp protease ATP binding subunit

Probab=98.01  E-value=0.00011  Score=73.01  Aligned_cols=150  Identities=14%  Similarity=0.088  Sum_probs=76.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC-C-----CceEEEeccchhhhc----CChHHHHHHHHHHHhcCCCCCCCCCcc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR-F-----EGSYFAHNVREAEET----GKLADLRKELLSTLLNDGNMNKFPNIG   73 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-~-----~~~~~~~~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (329)
                      +-+.++|++|+|||++|..+++.+... .     ...+|..+.......    ..+.+-+                    
T Consensus       201 ~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl--------------------  260 (821)
T CHL00095        201 NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERL--------------------  260 (821)
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHH--------------------
Confidence            456899999999999999999987532 1     234454322211100    0011111                    


Q ss_pred             hHHHHhhhcCceEEEEEecCCCh---------hhHHHHhc-ccCCCCCCcEEEEEeCchhHHH-------hcCCCeEEEe
Q 020206           74 LNFQSKRLTRKKVLIVFDDVNHP---------RQIEFLIG-NLDWFASGSRILITARDKQALI-------NCGVNKIYQI  136 (329)
Q Consensus        74 ~~~l~~~~~~~~~LlvlDdv~~~---------~~~~~l~~-~l~~~~~~~~ilitsr~~~~~~-------~~~~~~~~~l  136 (329)
                      ...+.+....++++|++|+++..         .+...++. .+.  ....++|.+|.....-.       .....+.+.+
T Consensus       261 ~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~--rg~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v  338 (821)
T CHL00095        261 KRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA--RGELQCIGATTLDEYRKHIEKDPALERRFQPVYV  338 (821)
T ss_pred             HHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh--CCCcEEEEeCCHHHHHHHHhcCHHHHhcceEEec
Confidence            11122222346789999999411         11223332 221  22345555555443211       1123457788


Q ss_pred             cCCChhhhHHHHhhhhc--CCCCCCCchHHHHHHHHHHhcC
Q 020206          137 KELVHVDALKLLNQCAF--GRDHPDASYIELTHEAIKYAQG  175 (329)
Q Consensus       137 ~~l~~~e~~~ll~~~~~--~~~~~~~~~~~~~~~i~~~~~g  175 (329)
                      +..+.++...+++....  .........++++..++..+.+
T Consensus       339 ~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~  379 (821)
T CHL00095        339 GEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQ  379 (821)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhc
Confidence            88899988888764320  0111111334556666666653

>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein

Probab=98.00  E-value=3.1e-05  Score=64.52  Aligned_cols=34  Identities=21%  Similarity=0.473  Sum_probs=30.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .++|.|++|+|||+|+..+.......|..++++.
T Consensus        15 r~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t   48 (241)
T PF04665_consen   15 RMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLIT   48 (241)
T ss_pred             eEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEe
Confidence            5789999999999999999999999997776664

This is thought to be an ATPase involved in viral DNA packaging [].

>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=0.00032  Score=63.79  Aligned_cols=128  Identities=20%  Similarity=0.194  Sum_probs=73.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ..-|.+.|++|+|||+||.+++..  ..|+++-.++    ......+.+-.+...               ....+.+.-+
T Consensus       538 lvSvLl~Gp~~sGKTaLAA~iA~~--S~FPFvKiiS----pe~miG~sEsaKc~~---------------i~k~F~DAYk  596 (744)
T KOG0741|consen  538 LVSVLLEGPPGSGKTALAAKIALS--SDFPFVKIIS----PEDMIGLSESAKCAH---------------IKKIFEDAYK  596 (744)
T ss_pred             ceEEEEecCCCCChHHHHHHHHhh--cCCCeEEEeC----hHHccCccHHHHHHH---------------HHHHHHHhhc
Confidence            456789999999999999999764  6788877766    222222222211110               0111112222


Q ss_pred             CceEEEEEecCCChh------------hHHHHhcccCCCCC-CcEEE--EEeCchhHHHhcC----CCeEEEecCCCh-h
Q 020206           83 RKKVLIVFDDVNHPR------------QIEFLIGNLDWFAS-GSRIL--ITARDKQALINCG----VNKIYQIKELVH-V  142 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~------------~~~~l~~~l~~~~~-~~~il--itsr~~~~~~~~~----~~~~~~l~~l~~-~  142 (329)
                      ..--.||+||++..-            .++.++-.+...++ |-+++  -||....++..++    ....+.++.++. +
T Consensus       597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~  676 (744)
T KOG0741|consen  597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGE  676 (744)
T ss_pred             CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchH
Confidence            334589999984322            24444444443333 33443  3555556666653    445788999977 6


Q ss_pred             hhHHHHhhh
Q 020206          143 DALKLLNQC  151 (329)
Q Consensus       143 e~~~ll~~~  151 (329)
                      +..+.+...
T Consensus       677 ~~~~vl~~~  685 (744)
T KOG0741|consen  677 QLLEVLEEL  685 (744)
T ss_pred             HHHHHHHHc
Confidence            677777654

>PTZ00202 tuzin; Provisional

Probab=97.98  E-value=0.00048  Score=61.94  Aligned_cols=137  Identities=10%  Similarity=0.007  Sum_probs=79.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc----chHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI----GLNFQS   78 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~----~~~~l~   78 (329)
                      ++++.|+|++|+|||||++.+.....    ...++.+..      +..+++..++..++....  .....    +.+.+.
T Consensus       286 privvLtG~~G~GKTTLlR~~~~~l~----~~qL~vNpr------g~eElLr~LL~ALGV~p~--~~k~dLLrqIqeaLl  353 (550)
T PTZ00202        286 PRIVVFTGFRGCGKSSLCRSAVRKEG----MPAVFVDVR------GTEDTLRSVVKALGVPNV--EACGDLLDFISEACR  353 (550)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhcCC----ceEEEECCC------CHHHHHHHHHHHcCCCCc--ccHHHHHHHHHHHHH
Confidence            45889999999999999999986543    335554332      568999999999986432  22122    233333


Q ss_pred             hh-hc-CceEEEEEecCCChhh---HHHHhcccCCCCCCcEEEEEeCchhHH---HhcCCCeEEEecCCChhhhHHHHhh
Q 020206           79 KR-LT-RKKVLIVFDDVNHPRQ---IEFLIGNLDWFASGSRILITARDKQAL---INCGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        79 ~~-~~-~~~~LlvlDdv~~~~~---~~~l~~~l~~~~~~~~ilitsr~~~~~---~~~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                      +. .. ++..+||+-=-+..+.   +.+.... ..-..-|.|++----+...   ...+....+.+++|+.++|-++.++
T Consensus       354 ~~~~e~GrtPVLII~lreg~~l~rvyne~v~l-a~drr~ch~v~evpleslt~~~~~lprldf~~vp~fsr~qaf~y~~h  432 (550)
T PTZ00202        354 RAKKMNGETPLLVLKLREGSSLQRVYNEVVAL-ACDRRLCHVVIEVPLESLTIANTLLPRLDFYLVPNFSRSQAFAYTQH  432 (550)
T ss_pred             HHHHhCCCCEEEEEEecCCCcHHHHHHHHHHH-HccchhheeeeeehHhhcchhcccCccceeEecCCCCHHHHHHHHhh
Confidence            32 22 5666777643322221   2222111 1112344555433222111   1123445788999999999999877


Q ss_pred             hh
Q 020206          151 CA  152 (329)
Q Consensus       151 ~~  152 (329)
                      ..
T Consensus       433 ~~  434 (550)
T PTZ00202        433 AI  434 (550)
T ss_pred             cc
Confidence            65

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=5.6e-05  Score=69.69  Aligned_cols=149  Identities=15%  Similarity=0.179  Sum_probs=78.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      +|=|.+|||+|+|||.||..++....-     -++.    ++    .    .++.....++..     ....+.+.+...
T Consensus       223 prGvLlHGPPGCGKT~lA~AiAgel~v-----Pf~~----is----A----peivSGvSGESE-----kkiRelF~~A~~  280 (802)
T KOG0733|consen  223 PRGVLLHGPPGCGKTSLANAIAGELGV-----PFLS----IS----A----PEIVSGVSGESE-----KKIRELFDQAKS  280 (802)
T ss_pred             CCceeeeCCCCccHHHHHHHHhhhcCC-----ceEe----ec----c----hhhhcccCcccH-----HHHHHHHHHHhc
Confidence            456899999999999999999887542     2222    10    1    112222221111     112333444455


Q ss_pred             CceEEEEEecCCCh--------h-----hHHHHhcccCCCC----CCc-EEEE--EeCchhHHHhc----CCCeEEEecC
Q 020206           83 RKKVLIVFDDVNHP--------R-----QIEFLIGNLDWFA----SGS-RILI--TARDKQALINC----GVNKIYQIKE  138 (329)
Q Consensus        83 ~~~~LlvlDdv~~~--------~-----~~~~l~~~l~~~~----~~~-~ili--tsr~~~~~~~~----~~~~~~~l~~  138 (329)
                      ..+|++++|+++..        .     -...++..+....    .|- .++|  |+|....-..+    +..+.|.|.-
T Consensus       281 ~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~v  360 (802)
T KOG0733|consen  281 NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGV  360 (802)
T ss_pred             cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecC
Confidence            67999999999421        1     1223333332211    122 2333  44443222222    3446777777


Q ss_pred             CChhhhHHHHhhhhcCCCCCC-CchHHHHHHHHHHhcCCc
Q 020206          139 LVHVDALKLLNQCAFGRDHPD-ASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       139 l~~~e~~~ll~~~~~~~~~~~-~~~~~~~~~i~~~~~g~P  177 (329)
                      -++.+=.++++..+.+-..+. -.    .++|+..+-|+-
T Consensus       361 P~e~aR~~IL~~~~~~lrl~g~~d----~~qlA~lTPGfV  396 (802)
T KOG0733|consen  361 PSETAREEILRIICRGLRLSGDFD----FKQLAKLTPGFV  396 (802)
T ss_pred             CchHHHHHHHHHHHhhCCCCCCcC----HHHHHhcCCCcc
Confidence            777777777777664433222 12    666777777653

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.96  E-value=3e-05  Score=63.54  Aligned_cols=107  Identities=14%  Similarity=0.152  Sum_probs=60.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe-ccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH-NVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      ++.|.|++|+||||++..++..+.......++.. +..+.....     ...+.    .............+.+...++.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~-----~~~~i----~q~~vg~~~~~~~~~i~~aLr~   73 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHES-----KRSLI----NQREVGLDTLSFENALKAALRQ   73 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccC-----cccee----eecccCCCccCHHHHHHHHhcC
Confidence            6899999999999999998887765444343332 111110000     00000    0000001111244556666666


Q ss_pred             ceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206           84 KKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQ  123 (329)
Q Consensus        84 ~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~  123 (329)
                      .+=+|++|++.+.+.+...+...   ..|..++.|+....
T Consensus        74 ~pd~ii~gEird~e~~~~~l~~a---~~G~~v~~t~Ha~~  110 (198)
T cd01131          74 DPDVILVGEMRDLETIRLALTAA---ETGHLVMSTLHTNS  110 (198)
T ss_pred             CcCEEEEcCCCCHHHHHHHHHHH---HcCCEEEEEecCCc
Confidence            77799999998877766655442   23455677776553

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.94  E-value=8.8e-06  Score=62.62  Aligned_cols=22  Identities=27%  Similarity=0.383  Sum_probs=21.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |.|+|++|+|||+|++.+++.+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7899999999999999999988

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=97.93  E-value=0.00021  Score=61.21  Aligned_cols=24  Identities=29%  Similarity=0.332  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +-+.|.|++|+|||++|+.++...
T Consensus        22 ~~vLL~G~~GtGKT~lA~~la~~l   45 (262)
T TIGR02640        22 YPVHLRGPAGTGKTTLAMHVARKR   45 (262)
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHh
Confidence            356799999999999999999855

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=97.91  E-value=0.00016  Score=69.33  Aligned_cols=52  Identities=13%  Similarity=-0.002  Sum_probs=34.1

Q ss_pred             CeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          131 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       131 ~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      ...+.+++++.++...++.+.+.....  ...+++.+.|.+.+..-+.++..++
T Consensus       345 ~~~i~~~pls~edi~~Il~~~a~~~~v--~ls~eal~~L~~ys~~gRraln~L~  396 (615)
T TIGR02903       345 CAEVFFEPLTPEDIALIVLNAAEKINV--HLAAGVEELIARYTIEGRKAVNILA  396 (615)
T ss_pred             eeEEEeCCCCHHHHHHHHHHHHHHcCC--CCCHHHHHHHHHCCCcHHHHHHHHH
Confidence            346789999999999999987632211  1234566667666654456666554

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.89  E-value=0.00026  Score=69.75  Aligned_cols=155  Identities=14%  Similarity=0.172  Sum_probs=81.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-+.++||+|+|||++|+.++......|    .....         .++.    ....++     ........+...-.
T Consensus       487 ~~giLL~GppGtGKT~lakalA~e~~~~f----i~v~~---------~~l~----~~~vGe-----se~~i~~~f~~A~~  544 (733)
T TIGR01243       487 PKGVLLFGPPGTGKTLLAKAVATESGANF----IAVRG---------PEIL----SKWVGE-----SEKAIREIFRKARQ  544 (733)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhcCCCE----EEEeh---------HHHh----hcccCc-----HHHHHHHHHHHHHh
Confidence            34588999999999999999998765322    11111         1111    111000     00011222233334


Q ss_pred             CceEEEEEecCCCh--------------hhHHHHhcccCCC--CCCcEEEEEeCchhHHH-h----cCCCeEEEecCCCh
Q 020206           83 RKKVLIVFDDVNHP--------------RQIEFLIGNLDWF--ASGSRILITARDKQALI-N----CGVNKIYQIKELVH  141 (329)
Q Consensus        83 ~~~~LlvlDdv~~~--------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~~-~----~~~~~~~~l~~l~~  141 (329)
                      ..+++|++|+++..              .....++..+...  ..+..||.||....... .    ......+.++..+.
T Consensus       545 ~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~  624 (733)
T TIGR01243       545 AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDE  624 (733)
T ss_pred             cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCH
Confidence            56799999998421              1123343333321  22334444554432211 1    13446788888898


Q ss_pred             hhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch-HHHHH
Q 020206          142 VDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI-ALKIL  183 (329)
Q Consensus       142 ~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl-al~~~  183 (329)
                      ++-.++|.....+.. .+..+    +..+++.+.|..- .|..+
T Consensus       625 ~~R~~i~~~~~~~~~~~~~~~----l~~la~~t~g~sgadi~~~  664 (733)
T TIGR01243       625 EARKEIFKIHTRSMPLAEDVD----LEELAEMTEGYTGADIEAV  664 (733)
T ss_pred             HHHHHHHHHHhcCCCCCccCC----HHHHHHHcCCCCHHHHHHH
Confidence            888888876552222 11112    6778888887653 34443

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=97.88  E-value=7e-05  Score=60.99  Aligned_cols=112  Identities=19%  Similarity=0.235  Sum_probs=55.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH-H-hcCCCceEEEeccchhhh--cCChHH-------HHHHHHHHHhcCCCCCCCCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK-I-SRRFEGSYFAHNVREAEE--TGKLAD-------LRKELLSTLLNDGNMNKFPN   71 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~-~-~~~~~~~~~~~~~~~~~~--~~~~~~-------~~~~i~~~~~~~~~~~~~~~   71 (329)
                      .++|++.|++|+|||.||...+-+ + ...|..+++....-....  ..-+.+       ....+...+..-..     .
T Consensus        19 ~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK~~p~~~p~~d~l~~~~~-----~   93 (205)
T PF02562_consen   19 NDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEKMEPYLRPIYDALEELFG-----K   93 (205)
T ss_dssp             -SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS---------TTTHHHHHHHTTTS------T
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHHHHHHHHHHHHHHHHHhC-----h
Confidence            578999999999999999998864 3 355677777654322111  001111       11112212111100     0


Q ss_pred             cchHHHH----------hhhcCc---eEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           72 IGLNFQS----------KRLTRK---KVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        72 ~~~~~l~----------~~~~~~---~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      ...+.+.          ..++++   +.+||+|++.+  ++++..++..+   +.+++++++.-..
T Consensus        94 ~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR~---g~~skii~~GD~~  156 (205)
T PF02562_consen   94 EKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTRI---GEGSKIIITGDPS  156 (205)
T ss_dssp             TCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTTB----TT-EEEEEE---
T ss_pred             HhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHccc---CCCcEEEEecCce
Confidence            0111111          133443   57999999954  56788888775   5789999988755

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PRK04296 thymidine kinase; Provisional

Probab=97.87  E-value=3.5e-05  Score=62.67  Aligned_cols=110  Identities=13%  Similarity=0.008  Sum_probs=59.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCC--CCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNM--NKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~l~~~~   81 (329)
                      .++.|+|++|.||||++..++.+...+...++++. . .......    ...++..++.....  -.........+.+ .
T Consensus         3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k-~-~~d~~~~----~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~   75 (190)
T PRK04296          3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK-P-AIDDRYG----EGKVVSRIGLSREAIPVSSDTDIFELIEE-E   75 (190)
T ss_pred             EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe-c-ccccccc----CCcEecCCCCcccceEeCChHHHHHHHHh-h
Confidence            47899999999999999999998866544444442 1 0111111    11222332211110  0001112222222 2


Q ss_pred             cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           82 TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        82 ~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      .++.-+||+|++.-  .+++.+++..+.  ..+..+++|.++.
T Consensus        76 ~~~~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~  116 (190)
T PRK04296         76 GEKIDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDT  116 (190)
T ss_pred             CCCCCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCc
Confidence            23445899999843  343555544432  4577899999884

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.87  E-value=1.4e-05  Score=59.80  Aligned_cols=23  Identities=26%  Similarity=0.388  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +|+|.|++|+||||+|+.+++.+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999986

...

>PRK10536 hypothetical protein; Provisional

Probab=97.87  E-value=0.00012  Score=61.33  Aligned_cols=117  Identities=14%  Similarity=0.195  Sum_probs=60.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH-H-hcCCCceEEEeccchhhh-----cCChH----HHHHHHHHHHhcCCCCCCC--
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK-I-SRRFEGSYFAHNVREAEE-----TGKLA----DLRKELLSTLLNDGNMNKF--   69 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~-~-~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~i~~~~~~~~~~~~~--   69 (329)
                      ..+|+++|++|+|||+||..++.. + ...|..++.....-....     +.+..    ..+..+...+......+..  
T Consensus        74 ~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~~p~~~pi~D~L~~~~~~~~~~~  153 (262)
T PRK10536         74 KQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKFAPYFRPVYDVLVRRLGASFMQY  153 (262)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHHHHHHHHHHHHHHHHhChHHHHH
Confidence            458999999999999999999874 3 344544444332111111     11111    1112221111110000000  


Q ss_pred             -----CCcchHHHHhhhcCce---EEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           70 -----PNIGLNFQSKRLTRKK---VLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        70 -----~~~~~~~l~~~~~~~~---~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                           .....-.-..+++++.   .+||+|+..+  ..++..++..+   +.++++|++.-..
T Consensus       154 ~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~ltR~---g~~sk~v~~GD~~  213 (262)
T PRK10536        154 CLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLTRL---GENVTVIVNGDIT  213 (262)
T ss_pred             HHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHhhc---CCCCEEEEeCChh
Confidence                 0000001112344543   4999999964  45667676665   5788999887654

>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family

Probab=97.86  E-value=0.00041  Score=69.01  Aligned_cols=26  Identities=31%  Similarity=0.249  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ++.++||+|+|||.||+.+++.+-..
T Consensus       598 ~~lf~Gp~GvGKT~lA~~La~~l~~~  623 (852)
T TIGR03345       598 VFLLVGPSGVGKTETALALAELLYGG  623 (852)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhCC
Confidence            68999999999999999999987543

Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.86  E-value=0.00038  Score=69.58  Aligned_cols=131  Identities=12%  Similarity=0.053  Sum_probs=66.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ   77 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l   77 (329)
                      ..++++|++|+|||+++..+++++....      ...+|..+............                .........+
T Consensus       195 ~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g----------------~~e~~l~~~l  258 (852)
T TIGR03346       195 NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRG----------------EFEERLKAVL  258 (852)
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhh----------------hHHHHHHHHH
Confidence            4567999999999999999999875431      23344332211100000000                0000011112


Q ss_pred             Hhhh-cCceEEEEEecCCChh---------hHHHHhcccCCCCCCcEEEEEeCchhHHH-------hcCCCeEEEecCCC
Q 020206           78 SKRL-TRKKVLIVFDDVNHPR---------QIEFLIGNLDWFASGSRILITARDKQALI-------NCGVNKIYQIKELV  140 (329)
Q Consensus        78 ~~~~-~~~~~LlvlDdv~~~~---------~~~~l~~~l~~~~~~~~ilitsr~~~~~~-------~~~~~~~~~l~~l~  140 (329)
                      .... .+++++|++|+++...         +...++.... ......+|-+|..+..-.       ..+..+.+.++..+
T Consensus       259 ~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l-~~g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~  337 (852)
T TIGR03346       259 NEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL-ARGELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPT  337 (852)
T ss_pred             HHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh-hcCceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCC
Confidence            2111 2368999999995221         1222322221 122334554444332211       11234568899999


Q ss_pred             hhhhHHHHhhh
Q 020206          141 HVDALKLLNQC  151 (329)
Q Consensus       141 ~~e~~~ll~~~  151 (329)
                      .++...+++..
T Consensus       338 ~~~~~~iL~~~  348 (852)
T TIGR03346       338 VEDTISILRGL  348 (852)
T ss_pred             HHHHHHHHHHH
Confidence            99999988754

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A

Probab=97.85  E-value=0.00039  Score=54.90  Aligned_cols=120  Identities=16%  Similarity=0.197  Sum_probs=65.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc--------------------CCCceEEEeccchhhhcCChHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR--------------------RFEGSYFAHNVREAEETGKLADLRKELLSTLLN   62 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   62 (329)
                      +..+.++|+.|+||+++|..+++.+-.                    .++...|+... .........++. .+...+..
T Consensus        19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~-~~~~~i~i~~ir-~i~~~~~~   96 (162)
T PF13177_consen   19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPD-KKKKSIKIDQIR-EIIEFLSL   96 (162)
T ss_dssp             -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETT-TSSSSBSHHHHH-HHHHHCTS
T ss_pred             ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEecc-cccchhhHHHHH-HHHHHHHH
Confidence            356899999999999999999986522                    23334443210 000011222221 22222211


Q ss_pred             CCCCCCCCCcchHHHHhhhcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecC
Q 020206           63 DGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKE  138 (329)
Q Consensus        63 ~~~~~~~~~~~~~~l~~~~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~  138 (329)
                      ..                ..+..=++|+||++  +.+....++..+.+.+.+..+|++|++.. +... ......+.+.+
T Consensus        97 ~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~  160 (162)
T PF13177_consen   97 SP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFRP  160 (162)
T ss_dssp             S-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE--
T ss_pred             HH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecCC
Confidence            11                11234589999996  45667778777777677888888887763 2222 34556777776


Q ss_pred             CC
Q 020206          139 LV  140 (329)
Q Consensus       139 l~  140 (329)
                      ++
T Consensus       161 ls  162 (162)
T PF13177_consen  161 LS  162 (162)
T ss_dssp             --
T ss_pred             CC
Confidence            54

...

>TIGR00602 rad24 checkpoint protein rad24

Probab=97.84  E-value=0.00033  Score=66.81  Aligned_cols=57  Identities=9%  Similarity=-0.115  Sum_probs=35.3

Q ss_pred             CeEEEecCCChhhhHHHHhhhhcCCCC---CC--CchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          131 NKIYQIKELVHVDALKLLNQCAFGRDH---PD--ASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       131 ~~~~~l~~l~~~e~~~ll~~~~~~~~~---~~--~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ...+.+.+++..+....+...+.....   ..  ...++.+..|+..++|--.....+...+
T Consensus       266 v~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l~~I~~~s~GDiRsAIn~LQf~  327 (637)
T TIGR00602       266 VSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSVELLCQGCSGDIRSAINSLQFS  327 (637)
T ss_pred             eeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHHHHHHHhCCChHHHHHHHHHHH
Confidence            346889999999977777766532110   11  1124668888888888665544444443

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.83  E-value=6.2e-05  Score=59.27  Aligned_cols=34  Identities=21%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++.|+|++|+|||+++.+++.........++|+.
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~   34 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD   34 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE
Confidence            3689999999999999999998766555566665

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00043  Score=64.09  Aligned_cols=150  Identities=18%  Similarity=0.214  Sum_probs=77.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK   85 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (329)
                      |.+|||+|+|||-||+.+++.-.-.|     ++..       .+     +++....++..     ......+.+.-...+
T Consensus       548 vLL~GPPGCGKTLlAKAVANEag~NF-----isVK-------GP-----ELlNkYVGESE-----rAVR~vFqRAR~saP  605 (802)
T KOG0733|consen  548 VLLCGPPGCGKTLLAKAVANEAGANF-----ISVK-------GP-----ELLNKYVGESE-----RAVRQVFQRARASAP  605 (802)
T ss_pred             eEEeCCCCccHHHHHHHHhhhccCce-----Eeec-------CH-----HHHHHHhhhHH-----HHHHHHHHHhhcCCC
Confidence            78999999999999999998754433     3311       11     12222222111     012223333344579


Q ss_pred             EEEEEecCCCh-------------hhHHHHhcccCCCC--CCcEEEEEe-CchhH----HHhcCCCeEEEecCCChhhhH
Q 020206           86 VLIVFDDVNHP-------------RQIEFLIGNLDWFA--SGSRILITA-RDKQA----LINCGVNKIYQIKELVHVDAL  145 (329)
Q Consensus        86 ~LlvlDdv~~~-------------~~~~~l~~~l~~~~--~~~~ilits-r~~~~----~~~~~~~~~~~l~~l~~~e~~  145 (329)
                      |+|+||+++..             ..+..++.-+....  .|.-||-.| |..-+    ++..+....+-++.-+.+|-.
T Consensus       606 CVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~  685 (802)
T KOG0733|consen  606 CVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERV  685 (802)
T ss_pred             eEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHH
Confidence            99999999421             12334443333221  233344333 33222    121234456667777888888


Q ss_pred             HHHhhhhcCCCCCCCchHHHHHHHHHH--hcCCch
Q 020206          146 KLLNQCAFGRDHPDASYIELTHEAIKY--AQGVPI  178 (329)
Q Consensus       146 ~ll~~~~~~~~~~~~~~~~~~~~i~~~--~~g~Pl  178 (329)
                      +++.........+... +=.++.|+..  |.|+.-
T Consensus       686 ~ILK~~tkn~k~pl~~-dVdl~eia~~~~c~gftG  719 (802)
T KOG0733|consen  686 AILKTITKNTKPPLSS-DVDLDEIARNTKCEGFTG  719 (802)
T ss_pred             HHHHHHhccCCCCCCc-ccCHHHHhhcccccCCch
Confidence            8888776432211111 1115556544  446554

>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=0.00011  Score=68.51  Aligned_cols=151  Identities=19%  Similarity=0.226  Sum_probs=80.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-|.++||||+|||++|+.+++...-.|     +.    +..        .+++..+.+++.     ....+.+.+.-.
T Consensus       468 pkGVLlyGPPGC~KT~lAkalAne~~~nF-----ls----vkg--------pEL~sk~vGeSE-----r~ir~iF~kAR~  525 (693)
T KOG0730|consen  468 PKGVLLYGPPGCGKTLLAKALANEAGMNF-----LS----VKG--------PELFSKYVGESE-----RAIREVFRKARQ  525 (693)
T ss_pred             CceEEEECCCCcchHHHHHHHhhhhcCCe-----ee----ccC--------HHHHHHhcCchH-----HHHHHHHHHHhh
Confidence            46789999999999999999998765443     21    000        111222222111     112222333333


Q ss_pred             CceEEEEEecCCChh-------------hHHHHhcccCCCCCC-cEEEEE--eCchhHHHh----cCCCeEEEecCCChh
Q 020206           83 RKKVLIVFDDVNHPR-------------QIEFLIGNLDWFASG-SRILIT--ARDKQALIN----CGVNKIYQIKELVHV  142 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~-------------~~~~l~~~l~~~~~~-~~ilit--sr~~~~~~~----~~~~~~~~l~~l~~~  142 (329)
                      -.+++|.||+++...             -+..++.-+...... ..+|+.  .|...+-..    .+..+.+.++.-+.+
T Consensus       526 ~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~  605 (693)
T KOG0730|consen  526 VAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE  605 (693)
T ss_pred             cCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence            457899999984321             133333333222222 233443  333322111    134567777777777


Q ss_pred             hhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCchH
Q 020206          143 DALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       143 e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                      --.++|..+...-. .+..+    ..+|++.++|..-|
T Consensus       606 aR~~Ilk~~~kkmp~~~~vd----l~~La~~T~g~SGA  639 (693)
T KOG0730|consen  606 ARLEILKQCAKKMPFSEDVD----LEELAQATEGYSGA  639 (693)
T ss_pred             HHHHHHHHHHhcCCCCcccc----HHHHHHHhccCChH
Confidence            77788887763322 11112    78888888887643

>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily

Probab=97.81  E-value=0.00018  Score=70.89  Aligned_cols=152  Identities=15%  Similarity=0.102  Sum_probs=77.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+-+.|+|++|+|||+|++.+++.....|   +.+. ........ ...                 ........+.....
T Consensus       212 ~~giLL~GppGtGKT~laraia~~~~~~~---i~i~-~~~i~~~~-~g~-----------------~~~~l~~lf~~a~~  269 (733)
T TIGR01243       212 PKGVLLYGPPGTGKTLLAKAVANEAGAYF---ISIN-GPEIMSKY-YGE-----------------SEERLREIFKEAEE  269 (733)
T ss_pred             CceEEEECCCCCChHHHHHHHHHHhCCeE---EEEe-cHHHhccc-ccH-----------------HHHHHHHHHHHHHh
Confidence            35689999999999999999998764322   1221 11110000 000                 00001222223334


Q ss_pred             CceEEEEEecCCCh-------------hhHHHHhcccCCC-CCCcEEEE-EeCchhHH-Hhc----CCCeEEEecCCChh
Q 020206           83 RKKVLIVFDDVNHP-------------RQIEFLIGNLDWF-ASGSRILI-TARDKQAL-INC----GVNKIYQIKELVHV  142 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~~~-~~~~~ili-tsr~~~~~-~~~----~~~~~~~l~~l~~~  142 (329)
                      ..+.+|+||+++..             .....++..+... ..+..++| +|...... ...    .....+.++..+.+
T Consensus       270 ~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~  349 (733)
T TIGR01243       270 NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKR  349 (733)
T ss_pred             cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHH
Confidence            56789999998421             1123333333222 22334444 44332211 111    23356778888888


Q ss_pred             hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchH
Q 020206          143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                      +-.+++...........   ......+++.+.|..-+
T Consensus       350 ~R~~Il~~~~~~~~l~~---d~~l~~la~~t~G~~ga  383 (733)
T TIGR01243       350 ARKEILKVHTRNMPLAE---DVDLDKLAEVTHGFVGA  383 (733)
T ss_pred             HHHHHHHHHhcCCCCcc---ccCHHHHHHhCCCCCHH
Confidence            88888876542221111   11267788888887543

This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.80  E-value=0.0003  Score=58.42  Aligned_cols=149  Identities=17%  Similarity=0.161  Sum_probs=80.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh-h
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR-L   81 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-~   81 (329)
                      ++.|..+||+|.|||.+|+.+++..+.     -++.    +    ...+++...    .+++.      ..+..+.++ .
T Consensus       151 PknVLFyGppGTGKTm~Akalane~kv-----p~l~----v----kat~liGeh----VGdga------r~Ihely~rA~  207 (368)
T COG1223         151 PKNVLFYGPPGTGKTMMAKALANEAKV-----PLLL----V----KATELIGEH----VGDGA------RRIHELYERAR  207 (368)
T ss_pred             cceeEEECCCCccHHHHHHHHhcccCC-----ceEE----e----chHHHHHHH----hhhHH------HHHHHHHHHHH
Confidence            578999999999999999999876442     1221    0    111111111    11110      022222222 3


Q ss_pred             cCceEEEEEecCCCh--------------hhHHHHhcccCCC--CCCcEEEEEeCchhHHHh---cCCCeEEEecCCChh
Q 020206           82 TRKKVLIVFDDVNHP--------------RQIEFLIGNLDWF--ASGSRILITARDKQALIN---CGVNKIYQIKELVHV  142 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~--------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~~~---~~~~~~~~l~~l~~~  142 (329)
                      ...+|++.+|+++..              +....++.-+...  ..|...|-+|.+...+..   ......++..--+.+
T Consensus       208 ~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~e  287 (368)
T COG1223         208 KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDE  287 (368)
T ss_pred             hcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChH
Confidence            346899999998431              2244444444321  234455555555433322   123345666667888


Q ss_pred             hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 020206          143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  177 (329)
                      |-..+++..+..-..+.   ....+.++.+++|..
T Consensus       288 Er~~ile~y~k~~Plpv---~~~~~~~~~~t~g~S  319 (368)
T COG1223         288 ERLEILEYYAKKFPLPV---DADLRYLAAKTKGMS  319 (368)
T ss_pred             HHHHHHHHHHHhCCCcc---ccCHHHHHHHhCCCC
Confidence            88888887762211111   111777888888865

>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.80  E-value=0.00041  Score=60.83  Aligned_cols=48  Identities=17%  Similarity=0.059  Sum_probs=34.4

Q ss_pred             EEEecCCChhhhHHHHhhhhcCCCCCC-CchHHHHHHHHHHhcCCchHH
Q 020206          133 IYQIKELVHVDALKLLNQCAFGRDHPD-ASYIELTHEAIKYAQGVPIAL  180 (329)
Q Consensus       133 ~~~l~~l~~~e~~~ll~~~~~~~~~~~-~~~~~~~~~i~~~~~g~Plal  180 (329)
                      .+++++++.+|+..++.-....+-... ...+...+++.-..+|||.-+
T Consensus       258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el  306 (309)
T PF10236_consen  258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPREL  306 (309)
T ss_pred             eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHh
Confidence            789999999999999987653222221 344556777777789999754

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).

>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA

Probab=97.78  E-value=0.00015  Score=71.19  Aligned_cols=24  Identities=29%  Similarity=0.376  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++.++||+|+|||.||+.+++.+.
T Consensus       486 ~~lf~Gp~GvGKT~lA~~la~~l~  509 (731)
T TIGR02639       486 SFLFTGPTGVGKTELAKQLAEALG  509 (731)
T ss_pred             eEEEECCCCccHHHHHHHHHHHhc
Confidence            478999999999999999999873

>PRK06762 hypothetical protein; Provisional

Probab=97.78  E-value=0.00087  Score=53.18  Aligned_cols=25  Identities=36%  Similarity=0.448  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +++|+|+|++|+||||+|+.+++.+
T Consensus         2 ~~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          2 TTLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4789999999999999999998886

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.77  E-value=5.7e-05  Score=61.57  Aligned_cols=57  Identities=16%  Similarity=0.110  Sum_probs=37.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh-cCChHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE-TGKLADLRKELLSTLLND   63 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~   63 (329)
                      ++++.++||.|+||||.+.+++.++..+-..+..++    .+. .....+-++..++.++.+
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis----~D~~R~ga~eQL~~~a~~l~vp   58 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALIS----ADTYRIGAVEQLKTYAEILGVP   58 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE----ESTSSTHHHHHHHHHHHHHTEE
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeec----CCCCCccHHHHHHHHHHHhccc
Confidence            579999999999999999999998876644455554    211 223334445555665543

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]

Probab=97.77  E-value=0.0004  Score=60.76  Aligned_cols=141  Identities=16%  Similarity=0.221  Sum_probs=81.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHh-cCCCCCCCCC--c----chHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL-NDGNMNKFPN--I----GLNFQ   77 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~~~~--~----~~~~l   77 (329)
                      .|.|+|-+|+|||.+++++.+...   ...+|++    +-+-.....++..|+.... .+..+.....  .    .+..+
T Consensus        32 ~~~iyG~sgTGKT~~~r~~l~~~n---~~~vw~n----~~ecft~~~lle~IL~~~~~~d~dg~~~~~~~en~~d~i~~l  104 (438)
T KOG2543|consen   32 IVHIYGHSGTGKTYLVRQLLRKLN---LENVWLN----CVECFTYAILLEKILNKSQLADKDGDKVEGDAENFSDFIYLL  104 (438)
T ss_pred             eEEEeccCCCchhHHHHHHHhhcC---Ccceeee----hHHhccHHHHHHHHHHHhccCCCchhhhhhHHHHHHHHHHHH
Confidence            468999999999999999998873   3467887    5556778888888888875 2222111111  0    11122


Q ss_pred             Hh--hhc--CceEEEEEecCCChhhH-----HHHhcccCCCCCCcEEEEEeCch-hHHHh--cC--CCeEEEecCCChhh
Q 020206           78 SK--RLT--RKKVLIVFDDVNHPRQI-----EFLIGNLDWFASGSRILITARDK-QALIN--CG--VNKIYQIKELVHVD  143 (329)
Q Consensus        78 ~~--~~~--~~~~LlvlDdv~~~~~~-----~~l~~~l~~~~~~~~ilitsr~~-~~~~~--~~--~~~~~~l~~l~~~e  143 (329)
                      .+  ...  ++.++||+||++...++     ..++............|+++-.. +....  .+  ....+.++..+.+|
T Consensus       105 ~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e  184 (438)
T KOG2543|consen  105 VQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEE  184 (438)
T ss_pred             HhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHH
Confidence            22  112  35899999999654432     22221111111223334444322 11111  12  23467788999999


Q ss_pred             hHHHHhhhh
Q 020206          144 ALKLLNQCA  152 (329)
Q Consensus       144 ~~~ll~~~~  152 (329)
                      ...++.+-.
T Consensus       185 ~~~Il~~~~  193 (438)
T KOG2543|consen  185 TQVILSRDN  193 (438)
T ss_pred             HHHHHhcCC
Confidence            999997654

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.76  E-value=0.00072  Score=67.46  Aligned_cols=26  Identities=35%  Similarity=0.390  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..++++|++|+|||++|+.++..+..
T Consensus       200 ~n~lL~G~pGvGKT~l~~~la~~i~~  225 (857)
T PRK10865        200 NNPVLIGEPGVGKTAIVEGLAQRIIN  225 (857)
T ss_pred             CceEEECCCCCCHHHHHHHHHHHhhc
Confidence            35779999999999999999998754

>PRK12608 transcription termination factor Rho; Provisional

Probab=97.76  E-value=0.00012  Score=64.88  Aligned_cols=89  Identities=16%  Similarity=0.136  Sum_probs=52.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceE-EEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCC-c-ch---HHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY-FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPN-I-GL---NFQ   77 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~-~~---~~l   77 (329)
                      ..+.|+|++|+|||||++.+++.+..+.+.+. ++...  ........++++.+...+......+.... . ..   ...
T Consensus       134 QR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lI--gER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~  211 (380)
T PRK12608        134 QRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLI--DERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLER  211 (380)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEe--cCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHH
Confidence            34689999999999999999998766554432 22211  11244667888877765443221111111 1 01   111


Q ss_pred             Hhh--hcCceEEEEEecCC
Q 020206           78 SKR--LTRKKVLIVFDDVN   94 (329)
Q Consensus        78 ~~~--~~~~~~LlvlDdv~   94 (329)
                      .++  -.+++++||+|++.
T Consensus       212 Ae~f~~~GkdVVLvlDslt  230 (380)
T PRK12608        212 AKRLVEQGKDVVILLDSLT  230 (380)
T ss_pred             HHHHHHcCCCEEEEEeCcH
Confidence            111  24789999999994

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.74  E-value=0.00047  Score=67.37  Aligned_cols=131  Identities=15%  Similarity=0.096  Sum_probs=66.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ   77 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l   77 (329)
                      .-+.++|++|+|||++|+.+++.+....      ...+|..+         +..++    .   ..... .........+
T Consensus       208 ~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~---------~~~ll----a---G~~~~-Ge~e~rl~~l  270 (758)
T PRK11034        208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLD---------IGSLL----A---GTKYR-GDFEKRFKAL  270 (758)
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEecc---------HHHHh----c---ccchh-hhHHHHHHHH
Confidence            3467899999999999999998764321      22223221         11111    0   00000 0000011112


Q ss_pred             Hh-hhcCceEEEEEecCCCh----------hhHHHHhcccCCCCCCcEEEEEeCchhHHH-------hcCCCeEEEecCC
Q 020206           78 SK-RLTRKKVLIVFDDVNHP----------RQIEFLIGNLDWFASGSRILITARDKQALI-------NCGVNKIYQIKEL  139 (329)
Q Consensus        78 ~~-~~~~~~~LlvlDdv~~~----------~~~~~l~~~l~~~~~~~~ilitsr~~~~~~-------~~~~~~~~~l~~l  139 (329)
                      .+ .....+.+|++|+++..          .+...++..+.. ....++|-+|.......       ..+..+.+.++++
T Consensus       271 ~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~-~g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~eP  349 (758)
T PRK11034        271 LKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEP  349 (758)
T ss_pred             HHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh-CCCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCC
Confidence            22 12345679999999421          222222322221 22334454444332110       1123468999999


Q ss_pred             ChhhhHHHHhhhh
Q 020206          140 VHVDALKLLNQCA  152 (329)
Q Consensus       140 ~~~e~~~ll~~~~  152 (329)
                      +.++..++++...
T Consensus       350 s~~~~~~IL~~~~  362 (758)
T PRK11034        350 SIEETVQIINGLK  362 (758)
T ss_pred             CHHHHHHHHHHHH
Confidence            9999999998643

>PRK08118 topology modulation protein; Reviewed

Probab=97.73  E-value=3.4e-05  Score=61.26  Aligned_cols=25  Identities=32%  Similarity=0.488  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.|.|+|++|+||||||+.+++.+.
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999998764

>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=8.9e-05  Score=69.59  Aligned_cols=138  Identities=19%  Similarity=0.219  Sum_probs=71.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      +.++++++||+|+|||++++.+|..+.++|-.    ...+++.   +..++.     ........ ..+.-.+..+.+ .
T Consensus       437 qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfR----fSvGG~t---DvAeIk-----GHRRTYVG-AMPGkiIq~LK~-v  502 (906)
T KOG2004|consen  437 QGKILCFVGPPGVGKTSIAKSIARALNRKFFR----FSVGGMT---DVAEIK-----GHRRTYVG-AMPGKIIQCLKK-V  502 (906)
T ss_pred             CCcEEEEeCCCCCCcccHHHHHHHHhCCceEE----Eeccccc---cHHhhc-----ccceeeec-cCChHHHHHHHh-h
Confidence            45789999999999999999999988776521    1122221   111111     00000000 111113333333 2


Q ss_pred             cCceEEEEEecCCC------------------hhhHHHHhcccCCCC-CCcEEE-EEeCch---hHHHhcCCCeEEEecC
Q 020206           82 TRKKVLIVFDDVNH------------------PRQIEFLIGNLDWFA-SGSRIL-ITARDK---QALINCGVNKIYQIKE  138 (329)
Q Consensus        82 ~~~~~LlvlDdv~~------------------~~~~~~l~~~l~~~~-~~~~il-itsr~~---~~~~~~~~~~~~~l~~  138 (329)
                      .-.+-|+.||+|+.                  +++-..|+..+.+.+ .=++|+ |+|=|.   -..+..+....|++.+
T Consensus       503 ~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlDRMEvIelsG  582 (906)
T KOG2004|consen  503 KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLDRMEVIELSG  582 (906)
T ss_pred             CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhhhhheeeccC
Confidence            33455899999843                  111122222222111 123443 333222   1122234557899999


Q ss_pred             CChhhhHHHHhhhhc
Q 020206          139 LVHVDALKLLNQCAF  153 (329)
Q Consensus       139 l~~~e~~~ll~~~~~  153 (329)
                      ...+|-..+-.+++.
T Consensus       583 Yv~eEKv~IA~~yLi  597 (906)
T KOG2004|consen  583 YVAEEKVKIAERYLI  597 (906)
T ss_pred             ccHHHHHHHHHHhhh
Confidence            999999988887763

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.70  E-value=4.9e-05  Score=58.31  Aligned_cols=26  Identities=35%  Similarity=0.420  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      -|+|+|+||+||||+++.+++.++++
T Consensus         7 ki~ITG~PGvGKtTl~~ki~e~L~~~   32 (179)
T COG1618           7 KIFITGRPGVGKTTLVLKIAEKLREK   32 (179)
T ss_pred             EEEEeCCCCccHHHHHHHHHHHHHhc
Confidence            58999999999999999999988766

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.70  E-value=0.00015  Score=64.69  Aligned_cols=107  Identities=14%  Similarity=0.172  Sum_probs=60.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe-ccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH-NVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .++.|+|++|+||||+...++..+.......++.. +..+.        .... ....................+...++
T Consensus       123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~--------~~~~-~~~~i~q~evg~~~~~~~~~l~~~lr  193 (343)
T TIGR01420       123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEY--------VHRN-KRSLINQREVGLDTLSFANALRAALR  193 (343)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhh--------hccC-ccceEEccccCCCCcCHHHHHHHhhc
Confidence            57899999999999999999887765444444443 11111        0000 00000010100111124556667777


Q ss_pred             CceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           83 RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      ..+=.|++|++.+.+.....+...   ..|..++.|....
T Consensus       194 ~~pd~i~vgEird~~~~~~~l~aa---~tGh~v~~T~Ha~  230 (343)
T TIGR01420       194 EDPDVILIGEMRDLETVELALTAA---ETGHLVFGTLHTN  230 (343)
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHH---HcCCcEEEEEcCC
Confidence            888899999998877766544432   2344455555543

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.70  E-value=0.00014  Score=58.21  Aligned_cols=30  Identities=20%  Similarity=0.210  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEG   33 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~   33 (329)
                      ++|.++|+||+||||+|+++++.+++....
T Consensus         2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~   31 (261)
T COG4088           2 PLIILTGYPGSGKTTFAKELAKELRQEIWR   31 (261)
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHhhhh
Confidence            689999999999999999999987665433

>PHA00729 NTP-binding motif containing protein

Probab=97.70  E-value=0.00028  Score=58.24  Aligned_cols=26  Identities=27%  Similarity=0.236  Sum_probs=22.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ...++|+|++|+|||+||..+++.+.
T Consensus        17 f~nIlItG~pGvGKT~LA~aLa~~l~   42 (226)
T PHA00729         17 FVSAVIFGKQGSGKTTYALKVARDVF   42 (226)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34689999999999999999998754

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=97.66  E-value=0.0021  Score=56.98  Aligned_cols=59  Identities=19%  Similarity=0.237  Sum_probs=37.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC---CCceEEEeccchhhhcCChHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR---FEGSYFAHNVREAEETGKLADLRKELLSTL   60 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   60 (329)
                      ++-+|+|.|+=|+|||++.+.+.+.+...   ....+++..+...........++..+...+
T Consensus        19 ~~~~IgL~G~WGsGKSs~l~~l~~~L~~~~~~~~~~i~fn~w~~~~~~~~~~~~~~~l~~~l   80 (325)
T PF07693_consen   19 DPFVIGLYGEWGSGKSSFLNMLKEELKEDNKEKYIFIYFNAWEYDGEDDLWASFLEELFDQL   80 (325)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccceeeEEEccccCCCcchHHHHHHHHHHHHH
Confidence            46789999999999999999999988776   333444443332222333344444444443

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PRK07261 topology modulation protein; Provisional

Probab=97.66  E-value=0.00024  Score=56.73  Aligned_cols=23  Identities=30%  Similarity=0.517  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .|+|+|++|+||||||++++..+
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHh
Confidence            48999999999999999998764

>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]

Probab=97.66  E-value=0.001  Score=58.83  Aligned_cols=117  Identities=17%  Similarity=0.175  Sum_probs=66.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC---------------------CceEEEeccchhhhcCC---hHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF---------------------EGSYFAHNVREAEETGK---LADLRKELLS   58 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~---~~~~~~~i~~   58 (329)
                      +..+.++||+|+|||++|..+++.+....                     +.+..+.    .+....   ..+.++.+..
T Consensus        24 ~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~----~s~~~~~~i~~~~vr~~~~   99 (325)
T COG0470          24 PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN----PSDLRKIDIIVEQVRELAE   99 (325)
T ss_pred             CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec----ccccCCCcchHHHHHHHHH
Confidence            34689999999999999999999765322                     2333332    111111   2333333333


Q ss_pred             HHhcCCCCCCCCCcchHHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEE
Q 020206           59 TLLNDGNMNKFPNIGLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIY  134 (329)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~  134 (329)
                      .......                .+..-++++|+++.  .+....++..+...+....+|++|... .+... ......+
T Consensus       100 ~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc~~i  163 (325)
T COG0470         100 FLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRCQRI  163 (325)
T ss_pred             HhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcceee
Confidence            3222111                24456999999964  344666666666556677777777644 22222 2344566


Q ss_pred             EecCC
Q 020206          135 QIKEL  139 (329)
Q Consensus       135 ~l~~l  139 (329)
                      .+.+.
T Consensus       164 ~f~~~  168 (325)
T COG0470         164 RFKPP  168 (325)
T ss_pred             ecCCc
Confidence            77663

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=97.66  E-value=0.00035  Score=57.06  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=54.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      +-++++|.|++|+|||++++.+.+.+...-..+++...         .......+.......       ...+..+....
T Consensus        17 ~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~ap---------T~~Aa~~L~~~~~~~-------a~Ti~~~l~~~   80 (196)
T PF13604_consen   17 GDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAP---------TNKAAKELREKTGIE-------AQTIHSFLYRI   80 (196)
T ss_dssp             TCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEES---------SHHHHHHHHHHHTS--------EEEHHHHTTEE
T ss_pred             CCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECC---------cHHHHHHHHHhhCcc-------hhhHHHHHhcC
Confidence            34689999999999999999998877765434444431         111222222222111       00111111111


Q ss_pred             ----------cCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           82 ----------TRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        82 ----------~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                                ....-+||+|+..  +...+..++....  ..+.++|+..=..
T Consensus        81 ~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~--~~~~klilvGD~~  131 (196)
T PF13604_consen   81 PNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAK--KSGAKLILVGDPN  131 (196)
T ss_dssp             CCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS---T-T-EEEEEE-TT
T ss_pred             CcccccccccCCcccEEEEecccccCHHHHHHHHHHHH--hcCCEEEEECCcc
Confidence                      1233599999995  4456766666654  2467787766543

>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP

Probab=97.66  E-value=0.00044  Score=53.95  Aligned_cols=117  Identities=14%  Similarity=0.106  Sum_probs=60.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhc--CCCC-----CCCCCc-----
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN--DGNM-----NKFPNI-----   72 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-----~~~~~~-----   72 (329)
                      .|-|++..|.||||+|.-.+-+...+-..+.++-...+.. ...-..+++.+ ..+.-  .+..     ....+.     
T Consensus         4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~-~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a~   81 (159)
T cd00561           4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGW-KYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAAA   81 (159)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCC-ccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHHH
Confidence            6788888899999999999887766655555544333211 11222222222 00100  0000     000000     


Q ss_pred             -chHHHHhhhcC-ceEEEEEecCC-----ChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206           73 -GLNFQSKRLTR-KKVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ  123 (329)
Q Consensus        73 -~~~~l~~~~~~-~~~LlvlDdv~-----~~~~~~~l~~~l~~~~~~~~ilitsr~~~  123 (329)
                       ..+...+.... .-=|+|||++-     ..-..+.++..+...+.+..+|+|+|+.+
T Consensus        82 ~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p  139 (159)
T cd00561          82 EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP  139 (159)
T ss_pred             HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence             11222233333 33499999982     22223444444444466778999999874

This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.66  E-value=0.00034  Score=62.32  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=28.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++++|+|+|++|+||||++..++..+..+-..+.++.
T Consensus       240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~  276 (436)
T PRK11889        240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT  276 (436)
T ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEe
Confidence            3578999999999999999999987765533444443

>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.0011  Score=59.37  Aligned_cols=149  Identities=15%  Similarity=0.161  Sum_probs=78.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK   85 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (329)
                      -.++||||+|||+++.++|+.+.    +-++...+.++   ..-.+ ++.++..                      ...+
T Consensus       238 YLLYGPPGTGKSS~IaAmAn~L~----ydIydLeLt~v---~~n~d-Lr~LL~~----------------------t~~k  287 (457)
T KOG0743|consen  238 YLLYGPPGTGKSSFIAAMANYLN----YDIYDLELTEV---KLDSD-LRHLLLA----------------------TPNK  287 (457)
T ss_pred             ceeeCCCCCCHHHHHHHHHhhcC----CceEEeeeccc---cCcHH-HHHHHHh----------------------CCCC
Confidence            35899999999999999988753    33333322221   12222 2222111                      1244


Q ss_pred             EEEEEecCCCh--------h------------hHHHHhcc---cCCCCCCcEEE-EEeCchhHHHh--c---CCCeEEEe
Q 020206           86 VLIVFDDVNHP--------R------------QIEFLIGN---LDWFASGSRIL-ITARDKQALIN--C---GVNKIYQI  136 (329)
Q Consensus        86 ~LlvlDdv~~~--------~------------~~~~l~~~---l~~~~~~~~il-itsr~~~~~~~--~---~~~~~~~l  136 (329)
                      -+||++|++..        +            .+.-++..   +...+.+-+|| +||....-+..  .   +-.-.+.+
T Consensus       288 SIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~m  367 (457)
T KOG0743|consen  288 SILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYM  367 (457)
T ss_pred             cEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEc
Confidence            57888887321        0            01112222   22223334554 56654422211  1   22346777


Q ss_pred             cCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC
Q 020206          137 KELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR  189 (329)
Q Consensus       137 ~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~  189 (329)
                      .--+.+....|+........     ......+|.+...+.-+.=..+++.+-.
T Consensus       368 gyCtf~~fK~La~nYL~~~~-----~h~L~~eie~l~~~~~~tPA~V~e~lm~  415 (457)
T KOG0743|consen  368 GYCTFEAFKTLASNYLGIEE-----DHRLFDEIERLIEETEVTPAQVAEELMK  415 (457)
T ss_pred             CCCCHHHHHHHHHHhcCCCC-----CcchhHHHHHHhhcCccCHHHHHHHHhh
Confidence            88889988888888873322     1234666666666655555555555533

>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.0014  Score=61.77  Aligned_cols=148  Identities=20%  Similarity=0.164  Sum_probs=80.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK   85 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (329)
                      |.++||+|+|||-||.+++....     .-+++    +   ..++-+-+.|    +..      .+...+.+.+....++
T Consensus       704 iLLyGppGcGKT~la~a~a~~~~-----~~fis----v---KGPElL~KyI----GaS------Eq~vR~lF~rA~~a~P  761 (952)
T KOG0735|consen  704 ILLYGPPGCGKTLLASAIASNSN-----LRFIS----V---KGPELLSKYI----GAS------EQNVRDLFERAQSAKP  761 (952)
T ss_pred             eEEECCCCCcHHHHHHHHHhhCC-----eeEEE----e---cCHHHHHHHh----ccc------HHHHHHHHHHhhccCC
Confidence            78999999999999999977643     22333    1   2222222222    111      1113444555556699


Q ss_pred             EEEEEecCCCh-------------hhHHHHhcccCCC--CCCcEEE-EEeCchhHHHhc----CCCeEEEecCCChhhhH
Q 020206           86 VLIVFDDVNHP-------------RQIEFLIGNLDWF--ASGSRIL-ITARDKQALINC----GVNKIYQIKELVHVDAL  145 (329)
Q Consensus        86 ~LlvlDdv~~~-------------~~~~~l~~~l~~~--~~~~~il-itsr~~~~~~~~----~~~~~~~l~~l~~~e~~  145 (329)
                      |++.||++++.             .-...++..+...  -.|.-|+ .|||...+-+.+    +..+.+.-+..++.|-.
T Consensus       762 CiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl  841 (952)
T KOG0735|consen  762 CILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERL  841 (952)
T ss_pred             eEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHH
Confidence            99999999531             2244455444321  2244444 366665322221    22234444555666667


Q ss_pred             HHHhhhhcC-CCCCCCchHHHHHHHHHHhcCCchH
Q 020206          146 KLLNQCAFG-RDHPDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       146 ~ll~~~~~~-~~~~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                      +++...... ....+    -..+-++.+++|+.-|
T Consensus       842 ~il~~ls~s~~~~~~----vdl~~~a~~T~g~tgA  872 (952)
T KOG0735|consen  842 EILQVLSNSLLKDTD----VDLECLAQKTDGFTGA  872 (952)
T ss_pred             HHHHHHhhccCCccc----cchHHHhhhcCCCchh
Confidence            777655421 11112    2277889999998764

>TIGR00763 lon ATP-dependent protease La

Probab=97.64  E-value=0.00038  Score=68.90  Aligned_cols=29  Identities=31%  Similarity=0.478  Sum_probs=24.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      .+.+.++||+|+|||++|+.+++.+...|
T Consensus       347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~  375 (775)
T TIGR00763       347 GPILCLVGPPGVGKTSLGKSIAKALNRKF  375 (775)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCCe
Confidence            35789999999999999999999875443

This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.00012  Score=70.32  Aligned_cols=93  Identities=22%  Similarity=0.261  Sum_probs=59.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHHHhhhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRLTR   83 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~~~~   83 (329)
                      ...+.||.|||||-||+++++.+-+.-..-+ -.++.++.++++++.++..          +++...- .-..+.+..++
T Consensus       523 sFlF~GPTGVGKTELAkaLA~~Lfg~e~ali-R~DMSEy~EkHsVSrLIGa----------PPGYVGyeeGG~LTEaVRr  591 (786)
T COG0542         523 SFLFLGPTGVGKTELAKALAEALFGDEQALI-RIDMSEYMEKHSVSRLIGA----------PPGYVGYEEGGQLTEAVRR  591 (786)
T ss_pred             EEEeeCCCcccHHHHHHHHHHHhcCCCccce-eechHHHHHHHHHHHHhCC----------CCCCceeccccchhHhhhc
Confidence            4567999999999999999998754323222 2335555555555544421          1122211 23456667777


Q ss_pred             ceE-EEEEecCC--ChhhHHHHhcccCC
Q 020206           84 KKV-LIVFDDVN--HPRQIEFLIGNLDW  108 (329)
Q Consensus        84 ~~~-LlvlDdv~--~~~~~~~l~~~l~~  108 (329)
                      +|+ +|.||+++  +++-+..|++.+.+
T Consensus       592 ~PySViLlDEIEKAHpdV~nilLQVlDd  619 (786)
T COG0542         592 KPYSVILLDEIEKAHPDVFNLLLQVLDD  619 (786)
T ss_pred             CCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence            876 89999995  56667777777653

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=97.61  E-value=0.00022  Score=60.11  Aligned_cols=36  Identities=19%  Similarity=0.228  Sum_probs=28.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|+|++|+|||+|+.+++.....+-..++|+.
T Consensus        25 g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~   60 (234)
T PRK06067         25 PSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVIT   60 (234)
T ss_pred             CcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEE
Confidence            467899999999999999999876544555666765

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=97.60  E-value=0.00016  Score=65.58  Aligned_cols=85  Identities=19%  Similarity=0.208  Sum_probs=48.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc--CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCC-cchHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPN-IGLNFQSK   79 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~l~~   79 (329)
                      .+.++++|++|+|||++|+.+++.+..  .+..+.|+.    +.+..+..+++...    ......-.... ...+.+..
T Consensus       194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~Vt----FHpsySYeDFI~G~----rP~~vgy~~~~G~f~~~~~~  265 (459)
T PRK11331        194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQ----FHQSYSYEDFIQGY----RPNGVGFRRKDGIFYNFCQQ  265 (459)
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEe----ecccccHHHHhccc----CCCCCCeEecCchHHHHHHH
Confidence            356889999999999999999998754  344455554    44445555554322    11111001111 12223333


Q ss_pred             hhc--CceEEEEEecCCC
Q 020206           80 RLT--RKKVLIVFDDVNH   95 (329)
Q Consensus        80 ~~~--~~~~LlvlDdv~~   95 (329)
                      ...  +++++||+|++..
T Consensus       266 A~~~p~~~~vliIDEINR  283 (459)
T PRK11331        266 AKEQPEKKYVFIIDEINR  283 (459)
T ss_pred             HHhcccCCcEEEEehhhc
Confidence            222  4689999999953

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=97.59  E-value=0.00021  Score=59.81  Aligned_cols=36  Identities=19%  Similarity=0.216  Sum_probs=30.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|+|++|+|||+|+.+++.........++|+.
T Consensus        23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~   58 (225)
T PRK09361         23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYID   58 (225)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            468899999999999999999988766667778876

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=97.58  E-value=0.00065  Score=54.80  Aligned_cols=23  Identities=17%  Similarity=0.212  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +|+|.|++|+||||+++.+++.+
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~   23 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENF   23 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998876

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PRK14974 cell division protein FtsY; Provisional

Probab=97.56  E-value=0.00087  Score=59.14  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=27.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ++++.++|++|+||||++..++..+...-..++++
T Consensus       140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li  174 (336)
T PRK14974        140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIA  174 (336)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence            57999999999999999999998876653334343

>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=97.54  E-value=0.00078  Score=55.33  Aligned_cols=33  Identities=18%  Similarity=0.343  Sum_probs=27.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      -|.+||-.|+|||+|++.+...+..+...-+-+
T Consensus        87 nVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV  119 (287)
T COG2607          87 NVLLWGARGTGKSSLVKALLNEYADEGLRLVEV  119 (287)
T ss_pred             ceEEecCCCCChHHHHHHHHHHHHhcCCeEEEE
Confidence            478999999999999999999988877664444

>cd01394 radB RadB

Probab=97.53  E-value=0.00027  Score=58.85  Aligned_cols=36  Identities=19%  Similarity=0.202  Sum_probs=30.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|+|++|+|||+|+.+++.....+...++|+.
T Consensus        19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~   54 (218)
T cd01394          19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYID   54 (218)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            468899999999999999999988766656677765

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=0.00099  Score=56.47  Aligned_cols=150  Identities=15%  Similarity=0.134  Sum_probs=75.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh-hc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR-LT   82 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-~~   82 (329)
                      |-|.++||+|.|||.||+.++.....     .|++    ++    -+++...    +.++..      -+...+.+. -.
T Consensus       167 rgiLLyGPPGTGKSYLAKAVATEAnS-----TFFS----vS----SSDLvSK----WmGESE------kLVknLFemARe  223 (439)
T KOG0739|consen  167 RGILLYGPPGTGKSYLAKAVATEANS-----TFFS----VS----SSDLVSK----WMGESE------KLVKNLFEMARE  223 (439)
T ss_pred             eeEEEeCCCCCcHHHHHHHHHhhcCC-----ceEE----ee----hHHHHHH----HhccHH------HHHHHHHHHHHh
Confidence            57899999999999999999876432     2333    21    2222222    222111      022222222 23


Q ss_pred             CceEEEEEecCCC---------hhhH----HHHhcccCC---CCCCcEEEEEeCchhHHHhc---CCCeEEEecCCChhh
Q 020206           83 RKKVLIVFDDVNH---------PRQI----EFLIGNLDW---FASGSRILITARDKQALINC---GVNKIYQIKELVHVD  143 (329)
Q Consensus        83 ~~~~LlvlDdv~~---------~~~~----~~l~~~l~~---~~~~~~ilitsr~~~~~~~~---~~~~~~~l~~l~~~e  143 (329)
                      +++.+|.+|+++.         .+..    .+|+..+..   ...|..|+=.|..+-++...   +....|-+ ||.+..
T Consensus       224 ~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYI-PLPe~~  302 (439)
T KOG0739|consen  224 NKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYI-PLPEAH  302 (439)
T ss_pred             cCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhHHHHHHHHhhcceec-cCCcHH
Confidence            5788999999942         1122    223333222   22233333344444333221   11122333 566666


Q ss_pred             hHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch
Q 020206          144 ALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       144 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      |+.-..+...+.. +..-.+...+.+.++++|..-
T Consensus       303 AR~~MF~lhlG~t-p~~LT~~d~~eL~~kTeGySG  336 (439)
T KOG0739|consen  303 ARARMFKLHLGDT-PHVLTEQDFKELARKTEGYSG  336 (439)
T ss_pred             HhhhhheeccCCC-ccccchhhHHHHHhhcCCCCc
Confidence            7655555443433 333334458889999988763

>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional

Probab=97.52  E-value=0.0013  Score=64.38  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+.++||+|+|||.+|+.+++.+.
T Consensus       490 ~~Lf~GP~GvGKT~lAk~LA~~l~  513 (758)
T PRK11034        490 SFLFAGPTGVGKTEVTVQLSKALG  513 (758)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999873

>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.52  E-value=0.00028  Score=56.16  Aligned_cols=36  Identities=22%  Similarity=0.151  Sum_probs=28.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh-cCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~   38 (329)
                      .-.+.+.||+|+|||.||+.+++.+. ......+-+.
T Consensus         3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d   39 (171)
T PF07724_consen    3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRID   39 (171)
T ss_dssp             SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHh
Confidence            35788999999999999999999887 4544444444

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.52  E-value=0.00087  Score=62.68  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=26.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .+++.++||+|+||||.++.+++.+.  +...-|.
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg--~~v~Ew~   77 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELG--FEVQEWI   77 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhC--CeeEEec
Confidence            57899999999999999999998763  3334454

>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]

Probab=97.51  E-value=0.00083  Score=63.20  Aligned_cols=150  Identities=15%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++.+.++||+|+|||.||+.++......|-.+..-             ++..    ...++     ........+....+
T Consensus       276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-------------~l~s----k~vGe-----sek~ir~~F~~A~~  333 (494)
T COG0464         276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-------------ELLS----KWVGE-----SEKNIRELFEKARK  333 (494)
T ss_pred             CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-------------HHhc----cccch-----HHHHHHHHHHHHHc
Confidence            45789999999999999999998654332211110             1111    10000     00002222333345


Q ss_pred             CceEEEEEecCCCh-------------hhHHHHhcccCCCCC--CcEEEEEeCchhHHHh-----cCCCeEEEecCCChh
Q 020206           83 RKKVLIVFDDVNHP-------------RQIEFLIGNLDWFAS--GSRILITARDKQALIN-----CGVNKIYQIKELVHV  142 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~~~~~--~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~~~  142 (329)
                      ..+++|.+|+++..             .....++..+.....  +..+|-+|..+.....     .+....+.++.-+.+
T Consensus       334 ~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~  413 (494)
T COG0464         334 LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLE  413 (494)
T ss_pred             CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHH
Confidence            67899999999321             223444444432222  3233334433322221     134457888889999


Q ss_pred             hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcC
Q 020206          143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQG  175 (329)
Q Consensus       143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g  175 (329)
                      +..+.|..+......+ -...-....+++.+.|
T Consensus       414 ~r~~i~~~~~~~~~~~-~~~~~~~~~l~~~t~~  445 (494)
T COG0464         414 ERLEIFKIHLRDKKPP-LAEDVDLEELAEITEG  445 (494)
T ss_pred             HHHHHHHHHhcccCCc-chhhhhHHHHHHHhcC
Confidence            9999998887322221 0112225666666666

>PRK10787 DNA-binding ATP-dependent protease La; Provisional

Probab=97.50  E-value=0.00082  Score=66.18  Aligned_cols=136  Identities=16%  Similarity=0.179  Sum_probs=68.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.++++||+|+|||++++.+++.....|..+.    .++.   ....++.... ....+     .........+... .
T Consensus       349 g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~----~~~~---~d~~~i~g~~-~~~~g-----~~~G~~~~~l~~~-~  414 (784)
T PRK10787        349 GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMA----LGGV---RDEAEIRGHR-RTYIG-----SMPGKLIQKMAKV-G  414 (784)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEE----cCCC---CCHHHhccch-hccCC-----CCCcHHHHHHHhc-C
Confidence            467999999999999999999987654432211    1111   1111111100 00000     0111122223222 2


Q ss_pred             CceEEEEEecCCChhh------HHHHhcccCCC---------------CCCcEEEEEeCchhHHHh-cCCCeEEEecCCC
Q 020206           83 RKKVLIVFDDVNHPRQ------IEFLIGNLDWF---------------ASGSRILITARDKQALIN-CGVNKIYQIKELV  140 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~~------~~~l~~~l~~~---------------~~~~~ilitsr~~~~~~~-~~~~~~~~l~~l~  140 (329)
                      ..+.+|+||+++....      ...++..+...               -.+..+|.|+....+... .+....+++.+++
T Consensus       415 ~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~~i~~aLl~R~~ii~~~~~t  494 (784)
T PRK10787        415 VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSMNIPAPLLDRMEVIRLSGYT  494 (784)
T ss_pred             CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCCCCCHHHhcceeeeecCCCC
Confidence            2344789999943211      23443333210               023334445543321111 2344678899999


Q ss_pred             hhhhHHHHhhhh
Q 020206          141 HVDALKLLNQCA  152 (329)
Q Consensus       141 ~~e~~~ll~~~~  152 (329)
                      .+|-.++.....
T Consensus       495 ~eek~~Ia~~~L  506 (784)
T PRK10787        495 EDEKLNIAKRHL  506 (784)
T ss_pred             HHHHHHHHHHhh
Confidence            999998887765

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=97.49  E-value=0.0071  Score=52.89  Aligned_cols=28  Identities=14%  Similarity=0.253  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      +-|.|.|++|+|||+++++++..+...+
T Consensus        65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~   92 (327)
T TIGR01650        65 RRVMVQGYHGTGKSTHIEQIAARLNWPC   92 (327)
T ss_pred             CcEEEEeCCCChHHHHHHHHHHHHCCCe
Confidence            4689999999999999999999886543

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=97.49  E-value=0.00021  Score=55.49  Aligned_cols=36  Identities=25%  Similarity=0.308  Sum_probs=29.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..+|+|+|.+|+||||||+.+.+.+.+....+.++.
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LD   37 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLD   37 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEec
Confidence            468999999999999999999999988766666654

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>PRK08233 hypothetical protein; Provisional

Probab=97.48  E-value=0.0001  Score=59.43  Aligned_cols=28  Identities=25%  Similarity=0.319  Sum_probs=25.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      |...+|+|.|++|+||||||..++..+.
T Consensus         1 ~~~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          1 KKTKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4578999999999999999999998764

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.48  E-value=0.0012  Score=52.85  Aligned_cols=22  Identities=18%  Similarity=0.368  Sum_probs=19.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~   24 (329)
                      ..+++|.|+.|+|||||.+.+.
T Consensus        21 G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          21 NVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            3578999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10733 hflB ATP-dependent metalloprotease; Reviewed

Probab=97.47  E-value=0.0018  Score=62.63  Aligned_cols=146  Identities=14%  Similarity=0.152  Sum_probs=74.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +-|.|+|++|+|||++++.++......|   +.+. ..         ++..    .+....     .......+......
T Consensus       186 ~gill~G~~G~GKt~~~~~~a~~~~~~f---~~is-~~---------~~~~----~~~g~~-----~~~~~~~f~~a~~~  243 (644)
T PRK10733        186 KGVLMVGPPGTGKTLLAKAIAGEAKVPF---FTIS-GS---------DFVE----MFVGVG-----ASRVRDMFEQAKKA  243 (644)
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHcCCCE---EEEe-hH---------HhHH----hhhccc-----HHHHHHHHHHHHhc
Confidence            3489999999999999999988754322   1111 11         1111    000000     00012222223334


Q ss_pred             ceEEEEEecCCCh----------------hhHHHHhcccCCCC--CCcEEEEEeCchhHHHh-----cCCCeEEEecCCC
Q 020206           84 KKVLIVFDDVNHP----------------RQIEFLIGNLDWFA--SGSRILITARDKQALIN-----CGVNKIYQIKELV  140 (329)
Q Consensus        84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~~~--~~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~  140 (329)
                      .+++|++|+++..                ..+..++..+....  .+..+|.||........     ....+.+.++..+
T Consensus       244 ~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd  323 (644)
T PRK10733        244 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD  323 (644)
T ss_pred             CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCC
Confidence            6889999998432                11233332222111  23334445554432211     1244677888888


Q ss_pred             hhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcC
Q 020206          141 HVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQG  175 (329)
Q Consensus       141 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g  175 (329)
                      .++-.+++........ .++..    ...+++.+.|
T Consensus       324 ~~~R~~Il~~~~~~~~l~~~~d----~~~la~~t~G  355 (644)
T PRK10733        324 VRGREQILKVHMRRVPLAPDID----AAIIARGTPG  355 (644)
T ss_pred             HHHHHHHHHHHhhcCCCCCcCC----HHHHHhhCCC
Confidence            8888888877653221 11211    4556777766

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.47  E-value=0.001  Score=60.84  Aligned_cols=36  Identities=17%  Similarity=0.173  Sum_probs=28.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .+.+|.++|++|+||||++..++..+......+..+
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV  129 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLV  129 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEe
Confidence            367899999999999999999999887653334443

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=97.47  E-value=0.0016  Score=56.11  Aligned_cols=36  Identities=14%  Similarity=-0.042  Sum_probs=29.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~   38 (329)
                      ..++.|.|++|+|||+|+.+++...... -..++|++
T Consensus        30 g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS   66 (271)
T cd01122          30 GELIILTAGTGVGKTTFLREYALDLITQHGVRVGTIS   66 (271)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEE
Confidence            3578999999999999999999876554 45677766

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=97.46  E-value=0.0019  Score=52.84  Aligned_cols=27  Identities=26%  Similarity=0.203  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.|-++|.||||+||||=+..+++.+-
T Consensus        47 nmP~liisGpPG~GKTTsi~~LAr~LL   73 (333)
T KOG0991|consen   47 NMPNLIISGPPGTGKTTSILCLARELL   73 (333)
T ss_pred             CCCceEeeCCCCCchhhHHHHHHHHHh
Confidence            457789999999999999999988754

>CHL00095 clpC Clp protease ATP binding subunit

Probab=97.45  E-value=0.00078  Score=67.12  Aligned_cols=92  Identities=21%  Similarity=0.264  Sum_probs=49.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHHHhhhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRLTR   83 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~~~~   83 (329)
                      .+.++||+|+|||+||+.+++.+-......+-+ ++.+.........+.       +.   +++.... ....+.+.++.
T Consensus       541 ~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~-d~s~~~~~~~~~~l~-------g~---~~gyvg~~~~~~l~~~~~~  609 (821)
T CHL00095        541 SFLFSGPTGVGKTELTKALASYFFGSEDAMIRL-DMSEYMEKHTVSKLI-------GS---PPGYVGYNEGGQLTEAVRK  609 (821)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhcCCccceEEE-EchhccccccHHHhc-------CC---CCcccCcCccchHHHHHHh
Confidence            467999999999999999999764332222222 233332222322221       11   1011111 11233444444


Q ss_pred             ce-EEEEEecCC--ChhhHHHHhcccC
Q 020206           84 KK-VLIVFDDVN--HPRQIEFLIGNLD  107 (329)
Q Consensus        84 ~~-~LlvlDdv~--~~~~~~~l~~~l~  107 (329)
                      ++ .+|+||+++  +++....+++.+.
T Consensus       610 ~p~~VvllDeieka~~~v~~~Llq~le  636 (821)
T CHL00095        610 KPYTVVLFDEIEKAHPDIFNLLLQILD  636 (821)
T ss_pred             CCCeEEEECChhhCCHHHHHHHHHHhc
Confidence            44 599999996  3455666665544

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.45  E-value=0.0013  Score=54.17  Aligned_cols=55  Identities=15%  Similarity=0.192  Sum_probs=34.0

Q ss_pred             chHHHHhhhcCceEEEEEecC---CChhh---HHHHhcccCCCCCCcEEEEEeCchhHHHhc
Q 020206           73 GLNFQSKRLTRKKVLIVFDDV---NHPRQ---IEFLIGNLDWFASGSRILITARDKQALINC  128 (329)
Q Consensus        73 ~~~~l~~~~~~~~~LlvlDdv---~~~~~---~~~l~~~l~~~~~~~~ilitsr~~~~~~~~  128 (329)
                      ..-.+.+.+...+-+|+.|+-   -+.+.   +-.++..+. ...+..+|+.|.++..+..+
T Consensus       149 QRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~-~~~g~tii~VTHd~~lA~~~  209 (226)
T COG1136         149 QRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELN-KERGKTIIMVTHDPELAKYA  209 (226)
T ss_pred             HHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHH-HhcCCEEEEEcCCHHHHHhC
Confidence            444566677788889999986   12222   333333322 12366899999999877653

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.43  E-value=0.00057  Score=58.54  Aligned_cols=35  Identities=14%  Similarity=0.073  Sum_probs=24.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++|+|+|.||+||||+|+++.+.+.+.-..+.+++
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~   36 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIIS   36 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEc
Confidence            68999999999999999999998776444444544

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.43  E-value=0.00026  Score=61.88  Aligned_cols=36  Identities=19%  Similarity=0.163  Sum_probs=30.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++-|+|++|+|||+||.+++......-..++|+.
T Consensus        55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId   90 (325)
T cd00983          55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFID   90 (325)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEC
Confidence            468889999999999999999987766666677776

RecA couples ATP hydrolysis to DNA strand exchange.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.43  E-value=0.0011  Score=51.56  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ++.|+|.+|+||||+++.++..+..
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~   25 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQ   25 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999998754

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=97.41  E-value=0.00062  Score=54.85  Aligned_cols=120  Identities=13%  Similarity=0.176  Sum_probs=60.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHH------HHHHHHHHHhcCCCCCCC-CCc---
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLAD------LRKELLSTLLNDGNMNKF-PNI---   72 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~-~~~---   72 (329)
                      ..+++|.|+.|+|||||++.++...... .+.+++.. ..... .....      ...+++..+......... ...   
T Consensus        25 G~~~~l~G~nGsGKStLl~~i~G~~~~~-~G~v~~~g-~~~~~-~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G  101 (180)
T cd03214          25 GEIVGILGPNGAGKSTLLKTLAGLLKPS-SGEILLDG-KDLAS-LSPKELARKIAYVPQALELLGLAHLADRPFNELSGG  101 (180)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCCC-CcEEEECC-EECCc-CCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHH
Confidence            3578999999999999999998765433 33333321 11110 01111      111133333221111011 111   


Q ss_pred             --chHHHHhhhcCceEEEEEecCC---ChhhHHHHhcccCCC-CC-CcEEEEEeCchhHH
Q 020206           73 --GLNFQSKRLTRKKVLIVFDDVN---HPRQIEFLIGNLDWF-AS-GSRILITARDKQAL  125 (329)
Q Consensus        73 --~~~~l~~~~~~~~~LlvlDdv~---~~~~~~~l~~~l~~~-~~-~~~ilitsr~~~~~  125 (329)
                        ..-.+.+.+...+-++++|+.-   +....+.+...+... .+ +..+|++|.+....
T Consensus       102 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~  161 (180)
T cd03214         102 ERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLA  161 (180)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence              2233444555677899999982   333333333333221 22 56788888876544

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>TIGR02012 tigrfam_recA protein RecA

Probab=97.41  E-value=0.00026  Score=61.86  Aligned_cols=36  Identities=19%  Similarity=0.197  Sum_probs=29.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++.|+|++|+|||||+.+++......-..++|+.
T Consensus        55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId   90 (321)
T TIGR02012        55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFID   90 (321)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEc
Confidence            368899999999999999999887766656667765

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=97.40  E-value=0.0001  Score=53.87  Aligned_cols=25  Identities=24%  Similarity=0.525  Sum_probs=21.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      |.|+|++|+|||+||..++..+.+.
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l~~~   25 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDLLKH   25 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHHHHH
Confidence            5799999999999999999877644

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PTZ00301 uridine kinase; Provisional

Probab=97.40  E-value=0.00018  Score=59.22  Aligned_cols=30  Identities=27%  Similarity=0.485  Sum_probs=25.7

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +.+.+|+|.|++|+||||||+.+.+.+...
T Consensus         1 ~~~~iIgIaG~SgSGKTTla~~l~~~l~~~   30 (210)
T PTZ00301          1 MPCTVIGISGASGSGKSSLSTNIVSELMAH   30 (210)
T ss_pred             CCCEEEEEECCCcCCHHHHHHHHHHHHHhh
Confidence            356899999999999999999998877543

>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.40  E-value=0.0023  Score=58.47  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++=|.++||||.|||-||+.++...
T Consensus       337 PKGVLLvGPPGTGKTlLARAvAGEA  361 (752)
T KOG0734|consen  337 PKGVLLVGPPGTGKTLLARAVAGEA  361 (752)
T ss_pred             CCceEEeCCCCCchhHHHHHhhccc
Confidence            3458899999999999999997653

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.39  E-value=0.00016  Score=55.76  Aligned_cols=24  Identities=21%  Similarity=0.378  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +|.+.|++|+||||+|+.++....
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~   24 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLG   24 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHST
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCC
Confidence            689999999999999999987643

...

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.39  E-value=0.00016  Score=54.53  Aligned_cols=22  Identities=45%  Similarity=0.732  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |+|.|++|+||||+|+.+.+..
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999999885

...

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.39  E-value=0.0015  Score=52.22  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=26.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++.++|++|+||||++..++..+.+.-..+..+.
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~   35 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA   35 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            6789999999999999999998776533344443

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.38  E-value=0.0003  Score=56.46  Aligned_cols=36  Identities=25%  Similarity=0.499  Sum_probs=30.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..+|++.|++|+||||+++.+++.+...+...+++.
T Consensus         7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~   42 (176)
T PRK05541          7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLD   42 (176)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence            458999999999999999999999877666666653

>PRK10865 protein disaggregation chaperone; Provisional

Probab=97.38  E-value=0.0017  Score=64.88  Aligned_cols=26  Identities=27%  Similarity=0.313  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      .+.++|++|+|||++|+.+++.....
T Consensus       600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~  625 (857)
T PRK10865        600 SFLFLGPTGVGKTELCKALANFMFDS  625 (857)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhhcC
Confidence            68899999999999999999876433

>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.0027  Score=61.09  Aligned_cols=154  Identities=14%  Similarity=0.138  Sum_probs=83.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      +|=|.|+||+|+|||-||+.+|..-     .+-|+.    ++.    .++.+    .+...+..     ...+.+...-.
T Consensus       344 PkGvLL~GPPGTGKTLLAKAiAGEA-----gVPF~s----vSG----SEFvE----~~~g~~as-----rvr~lf~~ar~  401 (774)
T KOG0731|consen  344 PKGVLLVGPPGTGKTLLAKAIAGEA-----GVPFFS----VSG----SEFVE----MFVGVGAS-----RVRDLFPLARK  401 (774)
T ss_pred             cCceEEECCCCCcHHHHHHHHhccc-----CCceee----ech----HHHHH----HhcccchH-----HHHHHHHHhhc
Confidence            4558899999999999999998763     233333    111    11111    11111100     01222333334


Q ss_pred             CceEEEEEecCCCh-----------------hhHHHHhcccCCCCC-CcEEEE-EeCchhHHHh-----cCCCeEEEecC
Q 020206           83 RKKVLIVFDDVNHP-----------------RQIEFLIGNLDWFAS-GSRILI-TARDKQALIN-----CGVNKIYQIKE  138 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-----------------~~~~~l~~~l~~~~~-~~~ili-tsr~~~~~~~-----~~~~~~~~l~~  138 (329)
                      +.+++|.+|+++..                 +.+..++..+..... +..|++ +|....++..     .+..+.+.++.
T Consensus       402 ~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~  481 (774)
T KOG0731|consen  402 NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDL  481 (774)
T ss_pred             cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccC
Confidence            56899999988421                 123444333322222 223444 4433322221     23456778888


Q ss_pred             CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHH
Q 020206          139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIAL  180 (329)
Q Consensus       139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal  180 (329)
                      -+...-.++|.-++..-... .+..+ ..+++..+-|++-|.
T Consensus       482 p~~~~r~~i~~~h~~~~~~~-~e~~d-l~~~a~~t~gf~gad  521 (774)
T KOG0731|consen  482 PDVKGRASILKVHLRKKKLD-DEDVD-LSKLASLTPGFSGAD  521 (774)
T ss_pred             CchhhhHHHHHHHhhccCCC-cchhh-HHHHHhcCCCCcHHH
Confidence            88888888888777433332 23344 444999999988764

>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=97.36  E-value=0.0055  Score=55.25  Aligned_cols=180  Identities=17%  Similarity=0.144  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      .-+=|.|.+|.|||.+...++.+.......  ++++.    ...-.....++..|...+......+.........+....
T Consensus       176 gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~in----c~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~  251 (529)
T KOG2227|consen  176 GSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYIN----CTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHT  251 (529)
T ss_pred             cceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEe----eccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence            345689999999999999998877655443  34544    222234445555555555222221122222333333333


Q ss_pred             cC--ceEEEEEecCCChhh--HHHHhcccCC-CCCCcEEEEEe---------CchhHHHh--cCCCeEEEecCCChhhhH
Q 020206           82 TR--KKVLIVFDDVNHPRQ--IEFLIGNLDW-FASGSRILITA---------RDKQALIN--CGVNKIYQIKELVHVDAL  145 (329)
Q Consensus        82 ~~--~~~LlvlDdv~~~~~--~~~l~~~l~~-~~~~~~ilits---------r~~~~~~~--~~~~~~~~l~~l~~~e~~  145 (329)
                      .+  ..+|+|+|+.+....  -..+...+.+ --+++++|+..         |--.-+..  .-....+..++.+.++..
T Consensus       252 ~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~  331 (529)
T KOG2227|consen  252 KQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIV  331 (529)
T ss_pred             hcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHH
Confidence            33  368999999853211  1111111111 01344443322         11111111  123457888999999999


Q ss_pred             HHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhc
Q 020206          146 KLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLF  188 (329)
Q Consensus       146 ~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~  188 (329)
                      +++..+.. ...........+..+++++.|..--+..+....+
T Consensus       332 ~Il~~rl~-~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R  373 (529)
T KOG2227|consen  332 EILQQRLS-EESTSIFLNAAIELCARKVAAPSGDLRKALDVCR  373 (529)
T ss_pred             HHHHHHHh-cccccccchHHHHHHHHHhccCchhHHHHHHHHH
Confidence            99999883 3333334445678888888888887777776665

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=97.36  E-value=0.0026  Score=50.53  Aligned_cols=57  Identities=9%  Similarity=0.097  Sum_probs=36.5

Q ss_pred             chHHHHhhhcCceEEEEEecC---CChhhHHHHhcccCC-CCCCcEEEEEeCchhHHHhcC
Q 020206           73 GLNFQSKRLTRKKVLIVFDDV---NHPRQIEFLIGNLDW-FASGSRILITARDKQALINCG  129 (329)
Q Consensus        73 ~~~~l~~~~~~~~~LlvlDdv---~~~~~~~~l~~~l~~-~~~~~~ilitsr~~~~~~~~~  129 (329)
                      ....+.+..-+++-+++-|+-   -+++....++..+.. +..|..|+++|.+......+.
T Consensus       144 QRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~  204 (223)
T COG2884         144 QRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMR  204 (223)
T ss_pred             HHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhcc
Confidence            334555667788999999976   134433334443332 245888999999997766653

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=97.35  E-value=0.00083  Score=56.22  Aligned_cols=36  Identities=17%  Similarity=0.066  Sum_probs=28.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~   38 (329)
                      ..++.|+|++|+|||+|+.+++.......      ..++|+.
T Consensus        19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~   60 (226)
T cd01393          19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYID   60 (226)
T ss_pred             CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEe
Confidence            46889999999999999999988765444      5566766

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB

Probab=97.35  E-value=0.0013  Score=65.90  Aligned_cols=27  Identities=30%  Similarity=0.294  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+.++||+|+|||++|+.+++.....
T Consensus       596 ~~~Lf~Gp~GvGKt~lA~~La~~l~~~  622 (852)
T TIGR03346       596 GSFLFLGPTGVGKTELAKALAEFLFDD  622 (852)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence            357899999999999999999976543

Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.34  E-value=0.00022  Score=58.27  Aligned_cols=26  Identities=35%  Similarity=0.552  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +|+|.|++|+||||||+.++..+...
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~   26 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKR   26 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            68999999999999999999988754

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.003  Score=52.36  Aligned_cols=28  Identities=25%  Similarity=0.325  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +|=|.++||+|+|||.|++.+++.....
T Consensus       189 prgvllygppg~gktml~kava~~t~a~  216 (408)
T KOG0727|consen  189 PRGVLLYGPPGTGKTMLAKAVANHTTAA  216 (408)
T ss_pred             CcceEEeCCCCCcHHHHHHHHhhccchh
Confidence            4668899999999999999998875543

>PRK09354 recA recombinase A; Provisional

Probab=97.32  E-value=0.00044  Score=60.96  Aligned_cols=36  Identities=19%  Similarity=0.188  Sum_probs=30.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      -+++-|+|++|+|||+|+.+++......-...+|+.
T Consensus        60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId   95 (349)
T PRK09354         60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFID   95 (349)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEC
Confidence            368889999999999999999987766666777776

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.32  E-value=0.0094  Score=57.00  Aligned_cols=68  Identities=22%  Similarity=0.298  Sum_probs=40.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK   85 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (329)
                      |.+|||+|+|||-+|+.+|..+.=.     |++.       ..+     +++....++.     +....+.+.+.-...+
T Consensus       708 ILLYGPPGTGKTLlAKAVATEcsL~-----FlSV-------KGP-----ELLNMYVGqS-----E~NVR~VFerAR~A~P  765 (953)
T KOG0736|consen  708 ILLYGPPGTGKTLLAKAVATECSLN-----FLSV-------KGP-----ELLNMYVGQS-----EENVREVFERARSAAP  765 (953)
T ss_pred             eEEECCCCCchHHHHHHHHhhceee-----EEee-------cCH-----HHHHHHhcch-----HHHHHHHHHHhhccCC
Confidence            7899999999999999998876422     3331       111     1222211211     1113334444445589


Q ss_pred             EEEEEecCCC
Q 020206           86 VLIVFDDVNH   95 (329)
Q Consensus        86 ~LlvlDdv~~   95 (329)
                      |+|.||++++
T Consensus       766 CVIFFDELDS  775 (953)
T KOG0736|consen  766 CVIFFDELDS  775 (953)
T ss_pred             eEEEeccccc
Confidence            9999999954

>TIGR00708 cobA cob(I)alamin adenosyltransferase

Probab=97.31  E-value=0.0013  Score=52.02  Aligned_cols=119  Identities=13%  Similarity=0.009  Sum_probs=59.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCC-----CCCCCc------
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNM-----NKFPNI------   72 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~------   72 (329)
                      ..|.|++..|.||||.|.-.+-+...+-..++.+-...+.. ...-...++.+.-.+...+..     ......      
T Consensus         6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~-~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~   84 (173)
T TIGR00708         6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAW-PNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKA   84 (173)
T ss_pred             cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCc-ccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHH
Confidence            46788888999999999999887665544444333222211 112222222220000000000     000000      


Q ss_pred             chHHHHhhhcCc-eEEEEEecCC-----ChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206           73 GLNFQSKRLTRK-KVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ  123 (329)
Q Consensus        73 ~~~~l~~~~~~~-~~LlvlDdv~-----~~~~~~~l~~~l~~~~~~~~ilitsr~~~  123 (329)
                      ..+...+.+... -=++|||++-     ..-..++++..+...+++..+|+|.|+.+
T Consensus        85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~p  141 (173)
T TIGR00708        85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGCP  141 (173)
T ss_pred             HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            222223333333 3499999982     22223333333444466778999999874

Alternate name: corrinoid adenosyltransferase.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.31  E-value=0.0033  Score=56.18  Aligned_cols=29  Identities=28%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      ..++.++|++|+||||++.+++..+...+
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~~~~~~  165 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAARCVMRF  165 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            46899999999999999999998865443

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.31  E-value=0.00023  Score=57.69  Aligned_cols=26  Identities=23%  Similarity=0.139  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++++|+|.|++|+||||+++.+++.+
T Consensus         2 ~~~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         2 KCKIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999998875

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.30  E-value=0.002  Score=57.34  Aligned_cols=37  Identities=19%  Similarity=0.180  Sum_probs=29.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..+++.|+|+.|+||||++..++..+..+...+.++.
T Consensus       205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lIt  241 (407)
T PRK12726        205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFIT  241 (407)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence            3578999999999999999999987755544455554

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.30  E-value=0.0017  Score=52.71  Aligned_cols=55  Identities=11%  Similarity=0.185  Sum_probs=36.3

Q ss_pred             hHHHHhhhcCceEEEEEecC---CChhhHHHHhcccCCC-CCCcEEEEEeCchhHHHhc
Q 020206           74 LNFQSKRLTRKKVLIVFDDV---NHPRQIEFLIGNLDWF-ASGSRILITARDKQALINC  128 (329)
Q Consensus        74 ~~~l~~~~~~~~~LlvlDdv---~~~~~~~~l~~~l~~~-~~~~~ilitsr~~~~~~~~  128 (329)
                      .-.+.+.+.-++-++.+|+.   -+++...+++..+... ..|-..++.|.+...+...
T Consensus       144 RVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~V  202 (240)
T COG1126         144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREV  202 (240)
T ss_pred             HHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHh
Confidence            34555666777889999998   3566666665554432 3466778888887666654

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.30  E-value=0.00025  Score=47.24  Aligned_cols=23  Identities=26%  Similarity=0.434  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +++|.|++|+||||+++.+.+.+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999886

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU)

Probab=97.30  E-value=0.0032  Score=50.00  Aligned_cols=31  Identities=13%  Similarity=0.024  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++.|.|++|+|||++|.+++..   ....++|+.
T Consensus         1 ~~li~G~~~sGKS~~a~~~~~~---~~~~~~y~a   31 (169)
T cd00544           1 IILVTGGARSGKSRFAERLAAE---LGGPVTYIA   31 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHHHh---cCCCeEEEE
Confidence            3689999999999999999876   223455554

CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.

>PF13245 AAA_19: Part of AAA domain

Probab=97.30  E-value=0.00043  Score=46.96  Aligned_cols=25  Identities=24%  Similarity=0.286  Sum_probs=19.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++++|.|++|+|||+++.+.+..+
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i~~l   34 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARIAEL   34 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            5778899999999996666665543

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.29  E-value=0.00074  Score=58.04  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=29.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.+++.++|++|+||||++..++..+......+.++.
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~  107 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA  107 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence            3578999999999999999999988866544454443

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.29  E-value=0.0015  Score=58.80  Aligned_cols=27  Identities=22%  Similarity=0.215  Sum_probs=24.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++++|.++|+.|+||||.+.+++..+.
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~  199 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYG  199 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999999998765

>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP

Probab=97.29  E-value=0.00068  Score=60.53  Aligned_cols=100  Identities=20%  Similarity=0.334  Sum_probs=53.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +=+=|||+.|.|||.|+-.+++.+..+....+.++            ++..++-+.+.....    ....+..+.+.+.+
T Consensus        63 ~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh------------~Fm~~vh~~l~~~~~----~~~~l~~va~~l~~  126 (362)
T PF03969_consen   63 KGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH------------EFMLDVHSRLHQLRG----QDDPLPQVADELAK  126 (362)
T ss_pred             ceEEEECCCCCchhHHHHHHHHhCCcccccccccc------------HHHHHHHHHHHHHhC----CCccHHHHHHHHHh
Confidence            34669999999999999999987643222222222            222222222222110    11124444555666


Q ss_pred             ceEEEEEecCC--Chhh---HHHHhcccCCCCCCcEEEEEeCch
Q 020206           84 KKVLIVFDDVN--HPRQ---IEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~---~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      +..||.||++.  +..+   +..++..+.  ..|. ++|+|.|.
T Consensus       127 ~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~  167 (362)
T PF03969_consen  127 ESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR  167 (362)
T ss_pred             cCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence            66799999983  3332   444444433  3455 45555444

AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=97.28  E-value=0.00064  Score=56.18  Aligned_cols=36  Identities=22%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|+|++|+|||+|+.+++.........++|+.
T Consensus        12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~   47 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYID   47 (209)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            468899999999999999999988766666788877

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>CHL00206 ycf2 Ycf2; Provisional

Probab=97.28  E-value=0.0032  Score=65.96  Aligned_cols=25  Identities=12%  Similarity=0.178  Sum_probs=22.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++=|.++||+|+|||.||+.+|...
T Consensus      1630 PKGILLiGPPGTGKTlLAKALA~es 1654 (2281)
T CHL00206       1630 SRGILVIGSIGTGRSYLVKYLATNS 1654 (2281)
T ss_pred             CCceEEECCCCCCHHHHHHHHHHhc
Confidence            4568899999999999999999864

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=97.27  E-value=0.0012  Score=57.28  Aligned_cols=36  Identities=17%  Similarity=0.160  Sum_probs=27.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC-C-CceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-F-EGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~-~~~~~~~   38 (329)
                      .+++.|+|++|+||||++..++..+..+ . ..+.++.
T Consensus       194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~  231 (282)
T TIGR03499       194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT  231 (282)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence            5689999999999999999999887644 2 3344443

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=97.27  E-value=0.0033  Score=50.51  Aligned_cols=25  Identities=20%  Similarity=0.411  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+++|.|+.|+|||||++.++....
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~   53 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDLK   53 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCC
Confidence            5789999999999999999987643

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain

Probab=97.27  E-value=0.0017  Score=55.41  Aligned_cols=52  Identities=31%  Similarity=0.430  Sum_probs=36.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELL   57 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   57 (329)
                      ..+.|.|.+|+|||+|+.+++...+.+|...+++.-.++-  .....++++.+.
T Consensus        70 Qr~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iGer--~~Ev~e~~~~~~  121 (274)
T cd01133          70 GKIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVGER--TREGNDLYHEMK  121 (274)
T ss_pred             CEEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccC--cHHHHHHHHHHH
Confidence            4578999999999999999999988777776666533221  223444555443

The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.

>TIGR02902 spore_lonB ATP-dependent protease LonB

Probab=97.26  E-value=0.0035  Score=59.25  Aligned_cols=24  Identities=38%  Similarity=0.457  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .-|.|+|++|+|||++|+.+++..
T Consensus        87 ~~vLi~Ge~GtGKt~lAr~i~~~~  110 (531)
T TIGR02902        87 QHVIIYGPPGVGKTAAARLVLEEA  110 (531)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999998754

Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.26  E-value=0.0011  Score=56.76  Aligned_cols=90  Identities=12%  Similarity=0.055  Sum_probs=53.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      .++.|.|+.|+||||++..+...+......++.+.+..+..-.    .+     .++....   .......+.+...++.
T Consensus        81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~----~~-----~q~~v~~---~~~~~~~~~l~~~lR~  148 (264)
T cd01129          81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIP----GI-----NQVQVNE---KAGLTFARGLRAILRQ  148 (264)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCC----Cc-----eEEEeCC---cCCcCHHHHHHHHhcc
Confidence            4799999999999999999888765432333443322221110    00     0110000   1111245666667777


Q ss_pred             ceEEEEEecCCChhhHHHHhcc
Q 020206           84 KKVLIVFDDVNHPRQIEFLIGN  105 (329)
Q Consensus        84 ~~~LlvlDdv~~~~~~~~l~~~  105 (329)
                      .+-.|+++++.+.+....++..
T Consensus       149 ~PD~i~vgEiR~~e~a~~~~~a  170 (264)
T cd01129         149 DPDIIMVGEIRDAETAEIAVQA  170 (264)
T ss_pred             CCCEEEeccCCCHHHHHHHHHH
Confidence            8889999999988876655544

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=0.0027  Score=50.29  Aligned_cols=34  Identities=24%  Similarity=0.292  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      -.+.|.|+.|+|||||.+.++.-.+..-..+.|-
T Consensus        29 e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~   62 (209)
T COG4133          29 EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ   62 (209)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEec
Confidence            3678999999999999999998666555555554

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.00065  Score=54.38  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .|.|.|++|+||||+|+.+++.+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999984

>PRK13531 regulatory ATPase RavA; Provisional

Probab=97.26  E-value=0.0026  Score=58.39  Aligned_cols=26  Identities=19%  Similarity=0.208  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      -|.|.|++|+|||++|+.++......
T Consensus        41 hVLL~GpPGTGKT~LAraLa~~~~~~   66 (498)
T PRK13531         41 SVFLLGPPGIAKSLIARRLKFAFQNA   66 (498)
T ss_pred             CEEEECCCChhHHHHHHHHHHHhccc
Confidence            47899999999999999999876543

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.26  E-value=0.0011  Score=55.62  Aligned_cols=123  Identities=19%  Similarity=0.186  Sum_probs=67.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh--cCChHHHHHHHHHHHhcCCC-CCCCCCc------c
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE--TGKLADLRKELLSTLLNDGN-MNKFPNI------G   73 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~-~~~~~~~------~   73 (329)
                      ..+++|+|.+|+||||+++.+..-..-....+.|--  .+...  .....+.+.+++...+.... ....+..      .
T Consensus        39 ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g--~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ  116 (268)
T COG4608          39 GETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEG--KDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ  116 (268)
T ss_pred             CCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcC--cchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence            457899999999999999999886654444444321  11111  12233334445555442211 0111111      2


Q ss_pred             hHHHHhhhcCceEEEEEecCCC------hhhHHHHhcccCCCCCCcEEEEEeCchhHHHhc
Q 020206           74 LNFQSKRLTRKKVLIVFDDVNH------PRQIEFLIGNLDWFASGSRILITARDKQALINC  128 (329)
Q Consensus        74 ~~~l~~~~~~~~~LlvlDdv~~------~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~  128 (329)
                      .-.+.+.+.-++-+||.|+.-+      ..++..++..+.. ..+...++.|.+-.+....
T Consensus       117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~-~~~lt~lFIsHDL~vv~~i  176 (268)
T COG4608         117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQE-ELGLTYLFISHDLSVVRYI  176 (268)
T ss_pred             hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHH-HhCCeEEEEEEEHHhhhhh
Confidence            3344556667888999998722      1233334333321 2366778888887666554

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=97.25  E-value=0.0014  Score=55.26  Aligned_cols=36  Identities=17%  Similarity=0.172  Sum_probs=27.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~   38 (329)
                      ..++.|+|++|+|||+|+.+++......      ...++|+.
T Consensus        19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~   60 (235)
T cd01123          19 GSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID   60 (235)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence            3688999999999999999998654322      25677776

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.24  E-value=0.0014  Score=54.42  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -.|+|.|++|+|||||.+-++.
T Consensus        30 EfvsilGpSGcGKSTLLriiAG   51 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAG   51 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            4789999999999999999985

>PRK06696 uridine kinase; Validated

Probab=97.24  E-value=0.00049  Score=57.50  Aligned_cols=29  Identities=31%  Similarity=0.462  Sum_probs=25.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      .+.+|+|.|++|+||||||+.+++.+...
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~~   49 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIKKR   49 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            46799999999999999999999987644

>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.0019  Score=53.86  Aligned_cols=30  Identities=27%  Similarity=0.351  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +=|.++||+|.|||-+|+.++++.     ..+|+.
T Consensus       212 kgvllygppgtgktl~aravanrt-----dacfir  241 (435)
T KOG0729|consen  212 KGVLLYGPPGTGKTLCARAVANRT-----DACFIR  241 (435)
T ss_pred             CceEEeCCCCCchhHHHHHHhccc-----CceEEe
Confidence            447899999999999999998773     345555

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=97.23  E-value=0.00088  Score=54.18  Aligned_cols=34  Identities=26%  Similarity=0.188  Sum_probs=28.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+.|.|++|+|||+|+.+++......-..++|++
T Consensus         1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s   34 (187)
T cd01124           1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVT   34 (187)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            3689999999999999999887665556677765

A related protein is found in archaea.

>cd01121 Sms Sms (bacterial radA) DNA repair protein

Probab=97.22  E-value=0.0014  Score=58.81  Aligned_cols=35  Identities=17%  Similarity=0.253  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .++.|.|++|+|||||+.+++.........++|+.
T Consensus        83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs  117 (372)
T cd01121          83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVS  117 (372)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            58899999999999999999988776555666765

This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=97.22  E-value=0.00059  Score=54.01  Aligned_cols=117  Identities=15%  Similarity=0.227  Sum_probs=58.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ...++|.|+.|+|||||.+.++..... ..+.+++.. ..... ....+...   ......... +......-.+.+.+-
T Consensus        26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~-~~G~v~~~g-~~~~~-~~~~~~~~---~~i~~~~qL-S~G~~qrl~laral~   98 (163)
T cd03216          26 GEVHALLGENGAGKSTLMKILSGLYKP-DSGEILVDG-KEVSF-ASPRDARR---AGIAMVYQL-SVGERQMVEIARALA   98 (163)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCCC-CCeEEEECC-EECCc-CCHHHHHh---cCeEEEEec-CHHHHHHHHHHHHHh
Confidence            357899999999999999999875432 233344331 11110 11111110   011100000 000112233444455


Q ss_pred             CceEEEEEecCC---ChhhHHHHhcccCCC-CCCcEEEEEeCchhHHH
Q 020206           83 RKKVLIVFDDVN---HPRQIEFLIGNLDWF-ASGSRILITARDKQALI  126 (329)
Q Consensus        83 ~~~~LlvlDdv~---~~~~~~~l~~~l~~~-~~~~~ilitsr~~~~~~  126 (329)
                      ..+-++++|+..   +....+.+...+... .++..+|++|.+.....
T Consensus        99 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~  146 (163)
T cd03216          99 RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF  146 (163)
T ss_pred             cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence            677799999983   333333333333221 23667888888875443

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.20  E-value=0.00046  Score=55.76  Aligned_cols=36  Identities=17%  Similarity=0.275  Sum_probs=31.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .|+++|+||+|+|||||+..+++.....|...+...
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~T   37 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHT   37 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeec
Confidence            588999999999999999999999888887666654

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.20  E-value=0.00037  Score=57.58  Aligned_cols=26  Identities=31%  Similarity=0.578  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...+|+|.|++|+|||||++.++..+
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999999999876

>PRK04040 adenylate kinase; Provisional

Probab=97.20  E-value=0.00043  Score=56.06  Aligned_cols=26  Identities=27%  Similarity=0.410  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|+|++|+||||+++.+++.+.
T Consensus         2 ~~~i~v~G~pG~GKtt~~~~l~~~l~   27 (188)
T PRK04040          2 MKVVVVTGVPGVGKTTVLNKALEKLK   27 (188)
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence            36899999999999999999998874

>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []

Probab=97.19  E-value=0.00033  Score=55.61  Aligned_cols=25  Identities=28%  Similarity=0.458  Sum_probs=21.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ++|+|++|+|||||++.+++.+++.
T Consensus         2 i~iTG~pG~GKTTll~k~i~~l~~~   26 (168)
T PF03266_consen    2 IFITGPPGVGKTTLLKKVIEELKKK   26 (168)
T ss_dssp             EEEES-TTSSHHHHHHHHHHHHHHT
T ss_pred             EEEECcCCCCHHHHHHHHHHHhhcc
Confidence            7899999999999999999988643

It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.

>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.19  E-value=0.0012  Score=62.33  Aligned_cols=153  Identities=13%  Similarity=0.138  Sum_probs=79.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+++.++|++|.||||||.-+|+...   ..++=+.    ++..-+...+-..|...+......             -..
T Consensus       326 kKilLL~GppGlGKTTLAHViAkqaG---YsVvEIN----ASDeRt~~~v~~kI~~avq~~s~l-------------~ad  385 (877)
T KOG1969|consen  326 KKILLLCGPPGLGKTTLAHVIAKQAG---YSVVEIN----ASDERTAPMVKEKIENAVQNHSVL-------------DAD  385 (877)
T ss_pred             cceEEeecCCCCChhHHHHHHHHhcC---ceEEEec----ccccccHHHHHHHHHHHHhhcccc-------------ccC
Confidence            47899999999999999999987632   1233333    333344444444444444333221             023


Q ss_pred             CceEEEEEecCCCh--hhHHHHhcccCC------CCCC--------------c-EEEEEeCch--hHHHhcC-CCeEEEe
Q 020206           83 RKKVLIVFDDVNHP--RQIEFLIGNLDW------FASG--------------S-RILITARDK--QALINCG-VNKIYQI  136 (329)
Q Consensus        83 ~~~~LlvlDdv~~~--~~~~~l~~~l~~------~~~~--------------~-~ilitsr~~--~~~~~~~-~~~~~~l  136 (329)
                      .++.-+|+|+++..  ..++.++..+..      ..++              + .||....+-  +.+..+. ....+.+
T Consensus       386 srP~CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f  465 (877)
T KOG1969|consen  386 SRPVCLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAF  465 (877)
T ss_pred             CCcceEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEe
Confidence            57888999999643  223333332220      0111              1 234344333  2222222 3345666


Q ss_pred             cCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCc
Q 020206          137 KELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       137 ~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~P  177 (329)
                      .+-+..-.++=+...+-...  .......+..+++.|.+--
T Consensus       466 ~~p~~s~Lv~RL~~IC~rE~--mr~d~~aL~~L~el~~~DI  504 (877)
T KOG1969|consen  466 VPPSQSRLVERLNEICHREN--MRADSKALNALCELTQNDI  504 (877)
T ss_pred             cCCChhHHHHHHHHHHhhhc--CCCCHHHHHHHHHHhcchH
Confidence            66555555555555442211  1222345777788877643

>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated

Probab=97.19  E-value=0.0019  Score=51.78  Aligned_cols=119  Identities=15%  Similarity=0.065  Sum_probs=61.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHh----cCC--CCCCCCCc----
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL----NDG--NMNKFPNI----   72 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~--~~~~~~~~----   72 (329)
                      ...|.|+|..|-||||.|.-.+-+...+-..+..+-.+.+.. ...-..+++.+ ..+.    ..+  ......+.    
T Consensus        22 ~g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~-~~GE~~~l~~l-~~v~~~~~g~~~~~~~~~~~e~~~~   99 (191)
T PRK05986         22 KGLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAW-STGERNLLEFG-GGVEFHVMGTGFTWETQDRERDIAA   99 (191)
T ss_pred             CCeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCC-ccCHHHHHhcC-CCcEEEECCCCCcccCCCcHHHHHH
Confidence            357899999999999999999887665544444443333221 11222222221 0010    000  00000000    


Q ss_pred             ---chHHHHhhhcC-ceEEEEEecCC-----ChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206           73 ---GLNFQSKRLTR-KKVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ  123 (329)
Q Consensus        73 ---~~~~l~~~~~~-~~~LlvlDdv~-----~~~~~~~l~~~l~~~~~~~~ilitsr~~~  123 (329)
                         ..+...+.+.. .-=++|||++-     ..-..++++..+...+.+..+|+|.|+.+
T Consensus       100 ~~~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p  159 (191)
T PRK05986        100 AREGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP  159 (191)
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence               12222333333 33499999982     22223334444444466778999999874

>PRK14531 adenylate kinase; Provisional

Probab=97.19  E-value=0.0015  Score=52.71  Aligned_cols=24  Identities=25%  Similarity=0.261  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +.|+|.|++|+||||+++.+++.+
T Consensus         3 ~~i~i~G~pGsGKsT~~~~la~~~   26 (183)
T PRK14531          3 QRLLFLGPPGAGKGTQAARLCAAH   26 (183)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            358999999999999999998875

>PRK14528 adenylate kinase; Provisional

Probab=97.16  E-value=0.0018  Score=52.40  Aligned_cols=24  Identities=21%  Similarity=0.282  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +.++|.|++|+||||+++.+++.+
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~   25 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERL   25 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999998775

>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0019  Score=57.27  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=29.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      -++.|-|.||+|||||..+++.++.... .+.|++
T Consensus        94 s~iLIgGdPGIGKSTLLLQva~~lA~~~-~vLYVs  127 (456)
T COG1066          94 SVILIGGDPGIGKSTLLLQVAARLAKRG-KVLYVS  127 (456)
T ss_pred             cEEEEccCCCCCHHHHHHHHHHHHHhcC-cEEEEe
Confidence            4788999999999999999999988766 677765

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.16  E-value=0.00067  Score=52.08  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC-CceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~   38 (329)
                      |+|.|+|+.|+|||||++.+++.+.++- ...++.+
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~   36 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH   36 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence            6899999999999999999999887554 3333444

>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B

Probab=97.16  E-value=0.00068  Score=59.30  Aligned_cols=46  Identities=30%  Similarity=0.395  Sum_probs=34.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLR   53 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   53 (329)
                      |++++.|-||+||||+|...+-...++-..+..++    .++.+++.+++
T Consensus         2 r~~~~~GKGGVGKTT~aaA~A~~~A~~G~rtLlvS----~Dpa~~L~d~l   47 (305)
T PF02374_consen    2 RILFFGGKGGVGKTTVAAALALALARRGKRTLLVS----TDPAHSLSDVL   47 (305)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTS-EEEEE----SSTTTHHHHHH
T ss_pred             eEEEEecCCCCCcHHHHHHHHHHHhhCCCCeeEee----cCCCccHHHHh
Confidence            78999999999999999999988877655666665    44444444444

...

>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=97.15  E-value=0.012  Score=54.26  Aligned_cols=26  Identities=19%  Similarity=0.270  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +.+++.|+||+|+||||.++.++..+
T Consensus       109 ~~~iLLltGPsGcGKSTtvkvLskel  134 (634)
T KOG1970|consen  109 GSRILLLTGPSGCGKSTTVKVLSKEL  134 (634)
T ss_pred             CceEEEEeCCCCCCchhHHHHHHHhh
Confidence            46899999999999999999998764

>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model

Probab=97.15  E-value=0.00025  Score=52.73  Aligned_cols=29  Identities=31%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcCCCce
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRRFEGS   34 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~   34 (329)
                      |.|.|.+|+|||++|+.++......|..+
T Consensus         2 vLleg~PG~GKT~la~~lA~~~~~~f~RI   30 (131)
T PF07726_consen    2 VLLEGVPGVGKTTLAKALARSLGLSFKRI   30 (131)
T ss_dssp             EEEES---HHHHHHHHHHHHHTT--EEEE
T ss_pred             EeeECCCccHHHHHHHHHHHHcCCceeEE
Confidence            67999999999999999999887776543

AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.

>PRK07667 uridine kinase; Provisional

Probab=97.14  E-value=0.00081  Score=54.81  Aligned_cols=28  Identities=25%  Similarity=0.388  Sum_probs=24.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+|+|.|++|+||||+|..+++.+...
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~   44 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQE   44 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            3689999999999999999999987654

>PRK00279 adk adenylate kinase; Reviewed

Probab=97.14  E-value=0.0018  Score=53.81  Aligned_cols=24  Identities=29%  Similarity=0.302  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .|+|.|++|+||||+++.+++.+.
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~   25 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYG   25 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999988753

>PRK06547 hypothetical protein; Provisional

Probab=97.14  E-value=0.00049  Score=54.82  Aligned_cols=26  Identities=35%  Similarity=0.449  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...+|.|.|++|+||||++..+++..
T Consensus        14 ~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         14 GMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998874

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=97.13  E-value=0.0021  Score=51.28  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+++|.|+.|+|||||.+.++....
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~G~~~   53 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRLYD   53 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCC
Confidence            5789999999999999999987654

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=97.13  E-value=0.0013  Score=56.31  Aligned_cols=36  Identities=28%  Similarity=0.236  Sum_probs=32.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++.|+|++|+|||+++.+++....+....++|+.
T Consensus        23 g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs   58 (260)
T COG0467          23 GSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVS   58 (260)
T ss_pred             CcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEE
Confidence            468999999999999999999998888877788876

>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]

Probab=97.13  E-value=0.013  Score=50.87  Aligned_cols=149  Identities=16%  Similarity=0.083  Sum_probs=76.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhh--hcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE--ETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ..-|.+.||.|+|||.|......+ .+.+.-.+..+...+.-  ++..+..+.+++...+.........-......+...
T Consensus        49 snsviiigprgsgkT~li~~~Ls~-~q~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~~k~~gsfte~l~~lL~~  127 (408)
T KOG2228|consen   49 SNSVIIIGPRGSGKTILIDTRLSD-IQENGENFLLVRLNGELQTDKIALKGITRQLALELNRIVKSFGSFTENLSKLLEA  127 (408)
T ss_pred             CCceEEEccCCCCceEeeHHHHhh-HHhcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhhheeecccchhHHHHHHH
Confidence            446889999999999999988777 44444444444332221  222334444444443332211111111122233333


Q ss_pred             hc------CceEEEEEecCCCh--h----hHHHHhcccCC-CCCCcEEEEEeCchhHHH-------hcCCCeEEEecCCC
Q 020206           81 LT------RKKVLIVFDDVNHP--R----QIEFLIGNLDW-FASGSRILITARDKQALI-------NCGVNKIYQIKELV  140 (329)
Q Consensus        81 ~~------~~~~LlvlDdv~~~--~----~~~~l~~~l~~-~~~~~~ilitsr~~~~~~-------~~~~~~~~~l~~l~  140 (329)
                      ++      ..++++|+|+++--  .    .+=.++..... ..+-|.+-+|||-.....       .+....++-++.++
T Consensus       128 L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~  207 (408)
T KOG2228|consen  128 LKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLP  207 (408)
T ss_pred             HhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCC
Confidence            32      24689999988421  1    11111111111 133445567888642211       12233355667788


Q ss_pred             hhhhHHHHhhhh
Q 020206          141 HVDALKLLNQCA  152 (329)
Q Consensus       141 ~~e~~~ll~~~~  152 (329)
                      -++-+.++++..
T Consensus       208 l~~yv~l~r~ll  219 (408)
T KOG2228|consen  208 LGDYVDLYRKLL  219 (408)
T ss_pred             hHHHHHHHHHHh
Confidence            888899988876

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.13  E-value=0.00048  Score=55.23  Aligned_cols=26  Identities=27%  Similarity=0.247  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .++++++|++|+||||+|+.+++...
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~~   27 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVLA   27 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            46899999999999999999988753

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK10867 signal recognition particle protein; Provisional

Probab=97.12  E-value=0.0045  Score=56.60  Aligned_cols=28  Identities=25%  Similarity=0.466  Sum_probs=25.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +.+|.++|++|+||||.+..++..+..+
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~~l~~~  127 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAKYLKKK  127 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHh
Confidence            5789999999999999999999887665

>TIGR00235 udk uridine kinase

Probab=97.12  E-value=0.00051  Score=56.67  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ...+|+|.|++|+|||||++.++..+.
T Consensus         5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~   31 (207)
T TIGR00235         5 KGIIIGIGGGSGSGKTTVARKIYEQLG   31 (207)
T ss_pred             CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            457899999999999999999988764

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=97.12  E-value=0.00093  Score=52.11  Aligned_cols=20  Identities=30%  Similarity=0.355  Sum_probs=18.7

Q ss_pred             EEcCCCCcHHHHHHHHHHHH
Q 020206            8 IWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         8 I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |.|+||+||||+|+.+++++
T Consensus         1 i~G~PgsGK~t~~~~la~~~   20 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRY   20 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHH
T ss_pred             CcCCCCCChHHHHHHHHHhc
Confidence            68999999999999999986

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.11  E-value=0.00057  Score=56.57  Aligned_cols=23  Identities=17%  Similarity=0.086  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .++++|+|+.|.|||||.+.++.
T Consensus        29 ~~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          29 PSIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             ceEEEEECCCCCChHHHHHHHHH
Confidence            38899999999999999999985

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=97.11  E-value=0.0043  Score=52.07  Aligned_cols=53  Identities=17%  Similarity=0.304  Sum_probs=34.9

Q ss_pred             chHHHHhhhcCceEEEEEecCC---C---hhhHHHHhcccCCCCCCcEEEEEeCchhHHHh
Q 020206           73 GLNFQSKRLTRKKVLIVFDDVN---H---PRQIEFLIGNLDWFASGSRILITARDKQALIN  127 (329)
Q Consensus        73 ~~~~l~~~~~~~~~LlvlDdv~---~---~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~  127 (329)
                      ....+.+.+.+.+=|++||+-.   +   ...+-.++..+.  ..|+.||+.|.+-.....
T Consensus       146 QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~--~eg~tIl~vtHDL~~v~~  204 (254)
T COG1121         146 QRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELR--QEGKTVLMVTHDLGLVMA  204 (254)
T ss_pred             HHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHH--HCCCEEEEEeCCcHHhHh
Confidence            3456667788888999999862   2   233444555544  338889999998755443

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.11  E-value=0.00069  Score=54.48  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +|+|.|.+|+||||||..+++.+...
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~   26 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVN   26 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            58999999999999999999987644

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.11  E-value=0.0022  Score=49.53  Aligned_cols=103  Identities=17%  Similarity=0.168  Sum_probs=54.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ..+++|.|+.|+|||||++.++...... .+.+++.....+.-...                 . +......-.+.+.+.
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~-~G~i~~~~~~~i~~~~~-----------------l-S~G~~~rv~laral~   86 (144)
T cd03221          26 GDRIGLVGRNGAGKSTLLKLIAGELEPD-EGIVTWGSTVKIGYFEQ-----------------L-SGGEKMRLALAKLLL   86 (144)
T ss_pred             CCEEEEECCCCCCHHHHHHHHcCCCCCC-ceEEEECCeEEEEEEcc-----------------C-CHHHHHHHHHHHHHh
Confidence            3578999999999999999987754322 33344331000000000                 0 001112223344455


Q ss_pred             CceEEEEEecCC---ChhhHHHHhcccCCCCCCcEEEEEeCchhHHH
Q 020206           83 RKKVLIVFDDVN---HPRQIEFLIGNLDWFASGSRILITARDKQALI  126 (329)
Q Consensus        83 ~~~~LlvlDdv~---~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~  126 (329)
                      .++-++++|+..   +......+...+...  +..+|++|.+.....
T Consensus        87 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~  131 (144)
T cd03221          87 ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLD  131 (144)
T ss_pred             cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHH
Confidence            567799999983   333333333333222  346788887765443

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.11  E-value=0.0049  Score=56.49  Aligned_cols=36  Identities=17%  Similarity=0.163  Sum_probs=27.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh--cCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS--RRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~--~~~~~~~~~~   38 (329)
                      .+++.++|++|+||||++..++..+.  .....+.++.
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~  258 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALIT  258 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            46899999999999999999988775  3333455544

>TIGR01069 mutS2 MutS2 family protein

Probab=97.11  E-value=0.0009  Score=65.78  Aligned_cols=24  Identities=25%  Similarity=0.057  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+.++|+||.|.|||||.+.++..
T Consensus       322 ~~~liItGpNg~GKSTlLK~i~~~  345 (771)
T TIGR01069       322 KRVLAITGPNTGGKTVTLKTLGLL  345 (771)
T ss_pred             ceEEEEECCCCCCchHHHHHHHHH
Confidence            478999999999999999999765

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK05917 DNA polymerase III subunit delta'; Validated

Probab=97.10  E-value=0.032  Score=48.15  Aligned_cols=119  Identities=8%  Similarity=-0.023  Sum_probs=65.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC-------------CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-------------FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKF   69 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   69 (329)
                      +....++|+.|+||+++|..++..+-..             ++...++... +......+. -.+.+...+...      
T Consensus        19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~-~~~~~I~id-qiR~l~~~~~~~------   90 (290)
T PRK05917         19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQ-GKGRLHSIE-TPRAIKKQIWIH------   90 (290)
T ss_pred             CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecC-CCCCcCcHH-HHHHHHHHHhhC------
Confidence            4577899999999999999999875321             2333332100 000000111 111111111111      


Q ss_pred             CCcchHHHHhhhcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCC
Q 020206           70 PNIGLNFQSKRLTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKEL  139 (329)
Q Consensus        70 ~~~~~~~l~~~~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l  139 (329)
                                -..+..=++|+|+++  +.+....++..+.+.+++..+|++|.+. .+++. .+..+.+.+.++
T Consensus        91 ----------p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~  154 (290)
T PRK05917         91 ----------PYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPME  154 (290)
T ss_pred             ----------ccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccch
Confidence                      011334488889985  5567888888887767777776666654 33333 234556777765

>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C

Probab=97.10  E-value=0.0038  Score=50.78  Aligned_cols=26  Identities=27%  Similarity=0.197  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .++.|.|++|+|||+++.+++..+..
T Consensus        33 ~l~~i~g~~g~GKT~~~~~l~~~~~~   58 (193)
T PF13481_consen   33 ELTLIAGPPGSGKTTLALQLAAALAT   58 (193)
T ss_dssp             SEEEEEECSTSSHHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            47899999999999999999987654

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.10  E-value=0.00044  Score=53.17  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +|.|.|++|+||||+++.+++.+.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~g   25 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLG   25 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhC
Confidence            689999999999999999998764

>PRK07132 DNA polymerase III subunit delta'; Validated

Probab=97.09  E-value=0.051  Score=47.35  Aligned_cols=130  Identities=9%  Similarity=0.124  Sum_probs=78.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc---------CCC-ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR---------RFE-GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI   72 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~---------~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (329)
                      .++..++|+.|+||++++..+++.+-.         ..+ ...++. ..  .......++. ++...+...+        
T Consensus        18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d-~~--g~~i~vd~Ir-~l~~~~~~~~--------   85 (299)
T PRK07132         18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFD-IF--DKDLSKSEFL-SAINKLYFSS--------   85 (299)
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEec-cC--CCcCCHHHHH-HHHHHhccCC--------
Confidence            467889999999999999999998621         122 222221 00  0112222222 2222221111        


Q ss_pred             chHHHHhhhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch-hHHHh-cCCCeEEEecCCChhhhHHHH
Q 020206           73 GLNFQSKRLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK-QALIN-CGVNKIYQIKELVHVDALKLL  148 (329)
Q Consensus        73 ~~~~l~~~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~-~~~~~~~~l~~l~~~e~~~ll  148 (329)
                             ...+.+=++|+|+++.  ......++..+.+.++++.+|++|.+. .+... ....+.+++.++++++..+.+
T Consensus        86 -------~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l  158 (299)
T PRK07132         86 -------FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKL  158 (299)
T ss_pred             -------cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHH
Confidence                   0113455888888854  345677888877767777777666543 33332 345678999999999999888


Q ss_pred             hhh
Q 020206          149 NQC  151 (329)
Q Consensus       149 ~~~  151 (329)
                      ...
T Consensus       159 ~~~  161 (299)
T PRK07132        159 LSK  161 (299)
T ss_pred             HHc
Confidence            654

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=97.09  E-value=0.0042  Score=52.71  Aligned_cols=24  Identities=29%  Similarity=0.482  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+++|.|+.|+|||||++.++...
T Consensus        26 e~~~i~G~NGsGKSTLlk~L~G~~   49 (246)
T cd03237          26 EVIGILGPNGIGKTTFIKMLAGVL   49 (246)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.09  E-value=0.00053  Score=54.75  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.|+|+|++|+||||+++.+++.+
T Consensus         4 ~~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          4 GPNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999999986

>PRK03839 putative kinase; Provisional

Probab=97.09  E-value=0.00049  Score=55.41  Aligned_cols=24  Identities=33%  Similarity=0.518  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .|+|.|++|+||||+++.+++.+.
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~   25 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLG   25 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999999864

>PRK06217 hypothetical protein; Validated

Probab=97.08  E-value=0.0028  Score=51.21  Aligned_cols=24  Identities=25%  Similarity=0.533  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .|+|.|.+|+||||+++++++.+.
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~l~   26 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAERLD   26 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcC
Confidence            489999999999999999998763

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=97.08  E-value=0.0055  Score=51.79  Aligned_cols=24  Identities=17%  Similarity=0.259  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +..|.|++|+|||+|+.+++-.+.
T Consensus         3 ~~ll~g~~G~GKS~lal~la~~va   26 (239)
T cd01125           3 VSALVAPGGTGKSSLLLVLALAMA   26 (239)
T ss_pred             eeEEEcCCCCCHHHHHHHHHHHHh
Confidence            568999999999999999987653

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=97.08  E-value=0.0043  Score=51.15  Aligned_cols=25  Identities=24%  Similarity=0.237  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||++.++...
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~G~~   52 (207)
T PRK13539         28 GEALVLTGPNGSGKTTLLRLIAGLL   52 (207)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999988743

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=97.08  E-value=0.00087  Score=54.24  Aligned_cols=21  Identities=19%  Similarity=-0.072  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ++.|+|+.|.||||+.+.++-
T Consensus         1 ~~~ltG~N~~GKst~l~~i~~   21 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVGL   21 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHHH
Confidence            478999999999999999984

>TIGR01351 adk adenylate kinases

Probab=97.07  E-value=0.0024  Score=52.84  Aligned_cols=22  Identities=32%  Similarity=0.309  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |+|.|++|+||||+|+.+++.+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~   23 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKY   23 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999998765

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.07  E-value=0.0054  Score=52.54  Aligned_cols=112  Identities=13%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhc--CCCC-C--CC-CCc-chHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN--DGNM-N--KF-PNI-GLNF   76 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~-~--~~-~~~-~~~~   76 (329)
                      +-++|.|++|+|||||.+.++..+.... +.+++. ...+.......++    ......  +... .  +. .+. ...-
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~-G~i~~~-g~~v~~~d~~~ei----~~~~~~~~q~~~~~r~~v~~~~~k~~~  185 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGI-SQLGLR-GKKVGIVDERSEI----AGCVNGVPQHDVGIRTDVLDGCPKAEG  185 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCC-ceEEEC-CEEeecchhHHHH----HHHhcccccccccccccccccchHHHH
Confidence            5689999999999999999998765442 233332 1111110111122    211111  1000 0  00 000 1111


Q ss_pred             HHhhhc-CceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhH
Q 020206           77 QSKRLT-RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA  124 (329)
Q Consensus        77 l~~~~~-~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~  124 (329)
                      +..... ..+-++++|++...+.+..++..+.   .|..+|+||.+...
T Consensus       186 ~~~~i~~~~P~villDE~~~~e~~~~l~~~~~---~G~~vI~ttH~~~~  231 (270)
T TIGR02858       186 MMMLIRSMSPDVIVVDEIGREEDVEALLEALH---AGVSIIATAHGRDV  231 (270)
T ss_pred             HHHHHHhCCCCEEEEeCCCcHHHHHHHHHHHh---CCCEEEEEechhHH
Confidence            222222 3677999999987777776766643   47789999987544

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=97.06  E-value=0.0013  Score=52.70  Aligned_cols=115  Identities=14%  Similarity=0.097  Sum_probs=58.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEecc--chhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNV--REAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ..+++|.|+.|+|||||++.++...... .+.+++...  .-..+...                 . +......-.+.+.
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~i~~~~q~~~-----------------L-SgGq~qrv~lara   85 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQLIPN-GDNDEWDGITPVYKPQYID-----------------L-SGGELQRVAIAAA   85 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcCCCCC-CcEEEECCEEEEEEcccCC-----------------C-CHHHHHHHHHHHH
Confidence            3578999999999999999988754332 223333210  00000000                 0 0000122233444


Q ss_pred             hcCceEEEEEecCC---ChhhHHHHhcccCCC-CC-CcEEEEEeCchhHHHhcCCCeEEEec
Q 020206           81 LTRKKVLIVFDDVN---HPRQIEFLIGNLDWF-AS-GSRILITARDKQALINCGVNKIYQIK  137 (329)
Q Consensus        81 ~~~~~~LlvlDdv~---~~~~~~~l~~~l~~~-~~-~~~ilitsr~~~~~~~~~~~~~~~l~  137 (329)
                      +..++-++++|+.-   +......+...+... .. +..+|++|.+........ .+.+.+.
T Consensus        86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~-d~i~~l~  146 (177)
T cd03222          86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLS-DRIHVFE  146 (177)
T ss_pred             HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhC-CEEEEEc
Confidence            55567799999972   333333332222211 22 356888888775544322 2344444

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.04  E-value=0.00086  Score=54.76  Aligned_cols=28  Identities=29%  Similarity=0.412  Sum_probs=25.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +.+|+|.|.+|+||||+|+.+++.+...
T Consensus         8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~   35 (218)
T COG0572           8 VIIIGIAGGSGSGKTTVAKELSEQLGVE   35 (218)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence            4799999999999999999999988755

>TIGR00416 sms DNA repair protein RadA

Probab=97.04  E-value=0.0021  Score=59.44  Aligned_cols=36  Identities=14%  Similarity=0.184  Sum_probs=29.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|++|+|||||+.+++.........++|++
T Consensus        94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs  129 (454)
T TIGR00416        94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVS  129 (454)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence            357899999999999999999987765545566765

The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=97.03  E-value=0.0033  Score=49.89  Aligned_cols=115  Identities=16%  Similarity=0.114  Sum_probs=56.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEec---cchhhhcCC--hHHHHHHHHHHHhcCCCCCCCCCc--chH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHN---VREAEETGK--LADLRKELLSTLLNDGNMNKFPNI--GLN   75 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~--~~~   75 (329)
                      ...++|.|+.|+|||||++.++...... .+.+++..   ..-+.+...  ...+.+.+...     .......-  ..-
T Consensus        27 Ge~~~i~G~nGsGKSTLl~~l~G~~~~~-~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~-----~~~~LS~G~~~rv  100 (166)
T cd03223          27 GDRLLITGPSGTGKSSLFRALAGLWPWG-SGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYP-----WDDVLSGGEQQRL  100 (166)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCCCCC-CceEEECCCceEEEECCCCccccccHHHHhhcc-----CCCCCCHHHHHHH
Confidence            3578999999999999999998764332 22222211   000111111  11222222110     01011111  223


Q ss_pred             HHHhhhcCceEEEEEecCC---ChhhHHHHhcccCCCCCCcEEEEEeCchhHH
Q 020206           76 FQSKRLTRKKVLIVFDDVN---HPRQIEFLIGNLDWFASGSRILITARDKQAL  125 (329)
Q Consensus        76 ~l~~~~~~~~~LlvlDdv~---~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~  125 (329)
                      .+.+.+..++-++++|+.-   +......+...+...  +..+|++|.+....
T Consensus       101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~  151 (166)
T cd03223         101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW  151 (166)
T ss_pred             HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH
Confidence            3444455677799999972   333333333333222  35678888776543

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.03  E-value=0.0074  Score=54.57  Aligned_cols=25  Identities=24%  Similarity=0.169  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++.|+|++|+||||++.+++..+
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~  247 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKY  247 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999999765

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.03  E-value=0.0089  Score=47.55  Aligned_cols=23  Identities=17%  Similarity=0.143  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.|.|++|+|||++|.+++...
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~   25 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQS   25 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHc
Confidence            68999999999999999998775

>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]

Probab=97.02  E-value=0.0013  Score=57.62  Aligned_cols=49  Identities=29%  Similarity=0.279  Sum_probs=38.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKE   55 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   55 (329)
                      .|+++++|-||+||||.|...+-...+....+..++    .++.+++.+++..
T Consensus         2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~g~kvLlvS----tDPAhsL~d~f~~   50 (322)
T COG0003           2 TRIVFFTGKGGVGKTTIAAATAVKLAESGKKVLLVS----TDPAHSLGDVFDL   50 (322)
T ss_pred             cEEEEEecCCcccHHHHHHHHHHHHHHcCCcEEEEE----eCCCCchHhhhcc
Confidence            589999999999999999999888777665566665    5556666666543

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.02  E-value=0.0012  Score=52.26  Aligned_cols=29  Identities=24%  Similarity=0.287  Sum_probs=25.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..++++|+|++|+|||||++.+...+..+
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~l~~~   33 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPALCAR   33 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence            46799999999999999999999887653

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=97.02  E-value=0.0018  Score=58.06  Aligned_cols=95  Identities=14%  Similarity=0.056  Sum_probs=54.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCC--ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE--GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      ..+.|+|+.|+||||++..++..+....+  .++-+-+..+..-.. ...+..  ..+    .............++..+
T Consensus       150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~-~~~~~~--~~q----~evg~~~~~~~~~l~~aL  222 (372)
T TIGR02525       150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGS-PDDLLP--PAQ----SQIGRDVDSFANGIRLAL  222 (372)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCC-Cceeec--ccc----cccCCCccCHHHHHHHhh
Confidence            36889999999999999999887754332  233332221211000 000000  000    000001112445667778


Q ss_pred             cCceEEEEEecCCChhhHHHHhcc
Q 020206           82 TRKKVLIVFDDVNHPRQIEFLIGN  105 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~~~~~~l~~~  105 (329)
                      +..+=.|+++++.+.+.+...+..
T Consensus       223 R~~PD~I~vGEiRd~et~~~al~a  246 (372)
T TIGR02525       223 RRAPKIIGVGEIRDLETFQAAVLA  246 (372)
T ss_pred             ccCCCEEeeCCCCCHHHHHHHHHH
Confidence            888889999999988887765544

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>PTZ00088 adenylate kinase 1; Provisional

Probab=97.01  E-value=0.0032  Score=52.59  Aligned_cols=24  Identities=33%  Similarity=0.455  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      -.|+|.|++|+||||+|+.+++.+
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~   30 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKE   30 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            348999999999999999998875

>PLN02200 adenylate kinase family protein

Probab=97.00  E-value=0.00074  Score=56.73  Aligned_cols=26  Identities=15%  Similarity=0.109  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.+++|.|++|+||||+++.+++.+
T Consensus        42 ~~~ii~I~G~PGSGKsT~a~~La~~~   67 (234)
T PLN02200         42 TPFITFVLGGPGSGKGTQCEKIVETF   67 (234)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998765

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=97.00  E-value=0.003  Score=50.50  Aligned_cols=26  Identities=27%  Similarity=0.405  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+++|.|+.|+|||||.+.++....
T Consensus        28 Ge~~~i~G~nGsGKStLl~~l~G~~~   53 (173)
T cd03246          28 GESLAIIGPSGSGKSTLARLILGLLR   53 (173)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhccC
Confidence            35789999999999999999987654

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.00  E-value=0.0013  Score=52.69  Aligned_cols=35  Identities=26%  Similarity=0.218  Sum_probs=27.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ..+++|.|++|+||||+++.++..+......+.++
T Consensus         4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~i   38 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVL   38 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            46899999999999999999999876443333343

>PRK11823 DNA repair protein RadA; Provisional

Probab=96.99  E-value=0.0026  Score=58.76  Aligned_cols=36  Identities=14%  Similarity=0.147  Sum_probs=29.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|++|+|||||+.+++.....+...++|+.
T Consensus        80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs  115 (446)
T PRK11823         80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVS  115 (446)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            358899999999999999999988765545567765

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=96.99  E-value=0.00075  Score=55.01  Aligned_cols=27  Identities=41%  Similarity=0.463  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +...+++|.|.+|+||||+++.+++++
T Consensus         1 ~~~~~i~i~G~~G~GKst~a~~l~~~~   27 (197)
T PRK12339          1 MESTIHFIGGIPGVGKTSISGYIARHR   27 (197)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            457899999999999999999998874

>PRK00625 shikimate kinase; Provisional

Probab=96.99  E-value=0.00068  Score=54.06  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .|+|+|++|+||||+++.+++.+.
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~   25 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLS   25 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999988864

>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1

Probab=96.98  E-value=0.0033  Score=55.11  Aligned_cols=52  Identities=13%  Similarity=0.139  Sum_probs=33.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh------cCCCceEEEeccchhhhcCChHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS------RRFEGSYFAHNVREAEETGKLADLRKELLSTL   60 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   60 (329)
                      .++-|+|++|+|||+|+.+++-...      ..-..++|++    ......+..+. +++..+
T Consensus        97 ~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYId----tE~~f~~eRi~-~~a~~~  154 (313)
T TIGR02238        97 SITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYID----TEGTFRPDRIR-AIAERF  154 (313)
T ss_pred             eEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEE----cCCCCCHHHHH-HHHHHc
Confidence            5778999999999999999885432      1224567776    33333444443 344444

This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.

>PRK05973 replicative DNA helicase; Provisional

Probab=96.97  E-value=0.0012  Score=55.20  Aligned_cols=36  Identities=14%  Similarity=-0.008  Sum_probs=28.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|.+|+|||+|+.+++.....+...++|++
T Consensus        64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfS   99 (237)
T PRK05973         64 GDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFT   99 (237)
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            357899999999999999999987655545566655

>PRK15453 phosphoribulokinase; Provisional

Probab=96.97  E-value=0.0013  Score=55.94  Aligned_cols=29  Identities=24%  Similarity=0.354  Sum_probs=25.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..++|+|.|.+|+||||+++.+++.+...
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~~   32 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRE   32 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            56899999999999999999999877543

>COG3910 Predicted ATPase [General function prediction only]

Probab=96.97  E-value=0.011  Score=46.86  Aligned_cols=24  Identities=25%  Similarity=0.184  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .|+-+|+|..|+|||||...++-.
T Consensus        37 apIT~i~GENGsGKSTLLEaiA~~   60 (233)
T COG3910          37 APITFITGENGSGKSTLLEAIAAG   60 (233)
T ss_pred             CceEEEEcCCCccHHHHHHHHHhh
Confidence            578899999999999999998753

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=96.96  E-value=0.0015  Score=51.07  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=28.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..+|+++|.+|+||||+|..+.+.+..... .+++.
T Consensus        23 ~~viW~TGLSGsGKSTiA~ale~~L~~~G~-~~y~L   57 (197)
T COG0529          23 GAVIWFTGLSGSGKSTIANALEEKLFAKGY-HVYLL   57 (197)
T ss_pred             CeEEEeecCCCCCHHHHHHHHHHHHHHcCC-eEEEe
Confidence            468999999999999999999998876543 34443

>PRK14527 adenylate kinase; Provisional

Probab=96.96  E-value=0.00082  Score=54.70  Aligned_cols=27  Identities=19%  Similarity=0.198  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ...+++|.|++|+||||+++.+++.+.
T Consensus         5 ~~~~i~i~G~pGsGKsT~a~~La~~~~   31 (191)
T PRK14527          5 KNKVVIFLGPPGAGKGTQAERLAQELG   31 (191)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999988763

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=96.95  E-value=0.0082  Score=54.66  Aligned_cols=35  Identities=17%  Similarity=0.134  Sum_probs=28.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      +.+|.++|++|+||||++.+++..++.+...+..+
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV  134 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLV  134 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            57899999999999999999998776553344444

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.019  Score=47.66  Aligned_cols=25  Identities=28%  Similarity=0.332  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++=|.++||+|.|||-||+.+++..
T Consensus       181 PKGvlLygppgtGktLlaraVahht  205 (404)
T KOG0728|consen  181 PKGVLLYGPPGTGKTLLARAVAHHT  205 (404)
T ss_pred             CcceEEecCCCCchhHHHHHHHhhc
Confidence            4558899999999999999998763

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=96.95  E-value=0.00065  Score=52.90  Aligned_cols=23  Identities=22%  Similarity=0.543  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +++|+|++|+||||+|+.+++..
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~   23 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERL   23 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhc
Confidence            47899999999999999998763

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>PLN02674 adenylate kinase

Probab=96.94  E-value=0.0037  Score=52.58  Aligned_cols=25  Identities=20%  Similarity=0.178  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.|+|.|++|+||||+++.+++.+
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~   55 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEY   55 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHc
Confidence            3568899999999999999998875

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=96.94  E-value=0.0017  Score=57.96  Aligned_cols=96  Identities=15%  Similarity=0.104  Sum_probs=53.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCC---ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE---GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      .+|.|+|+.|+||||++..++..+....+   .++.+.+..+.    ....+...  .....+...+.........++..
T Consensus       135 glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~EdpiE~----~~~~~~~~--~~~v~Q~~v~~~~~~~~~~l~~a  208 (358)
T TIGR02524       135 GIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPIEF----VYDEIETI--SASVCQSEIPRHLNNFAAGVRNA  208 (358)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCceE----eccccccc--cceeeeeeccccccCHHHHHHHH
Confidence            57999999999999999999987754332   23333222111    11111000  00000100001111244556667


Q ss_pred             hcCceEEEEEecCCChhhHHHHhcc
Q 020206           81 LTRKKVLIVFDDVNHPRQIEFLIGN  105 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~~~~~~~l~~~  105 (329)
                      ++..+-.+++.++.+.+.....+..
T Consensus       209 LR~~Pd~i~vGEiRd~et~~~al~a  233 (358)
T TIGR02524       209 LRRKPHAILVGEARDAETISAALEA  233 (358)
T ss_pred             hccCCCEEeeeeeCCHHHHHHHHHH
Confidence            7788889999999888877655544

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=96.94  E-value=0.0007  Score=52.77  Aligned_cols=20  Identities=35%  Similarity=0.486  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~   24 (329)
                      .|+|+|.||+||||+++.+.
T Consensus         2 ~I~ITGTPGvGKTT~~~~L~   21 (180)
T COG1936           2 LIAITGTPGVGKTTVCKLLR   21 (180)
T ss_pred             eEEEeCCCCCchHHHHHHHH
Confidence            68999999999999999987

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=96.93  E-value=0.0014  Score=52.27  Aligned_cols=35  Identities=20%  Similarity=0.357  Sum_probs=31.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+|.|-|++|+|||+|..+.++.++++|...+...
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~   48 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITG   48 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEec
Confidence            58999999999999999999999999887766654

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.93  E-value=0.0066  Score=49.91  Aligned_cols=25  Identities=24%  Similarity=0.213  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||++.++...
T Consensus        27 Ge~~~l~G~nGsGKSTLl~~l~G~~   51 (204)
T PRK13538         27 GELVQIEGPNGAGKTSLLRILAGLA   51 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578999999999999999998653

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=96.93  E-value=0.00079  Score=54.12  Aligned_cols=25  Identities=16%  Similarity=0.244  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++++|.|++|+|||||++.++..+.
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5789999999999999999988754

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.92  E-value=0.0014  Score=56.03  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=29.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|++|+|||+|+.+++.....+-..++|++
T Consensus        36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis   71 (259)
T TIGR03878        36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVT   71 (259)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence            357899999999999999999887655555677776

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>PLN03187 meiotic recombination protein DMC1 homolog; Provisional

Probab=96.92  E-value=0.0046  Score=54.79  Aligned_cols=52  Identities=15%  Similarity=0.135  Sum_probs=33.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc------CCCceEEEeccchhhhcCChHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAHNVREAEETGKLADLRKELLSTL   60 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~   60 (329)
                      .+.-|+|++|+|||+|+.+++-...-      .-..++|+.    ......+..+.+ ++..+
T Consensus       127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyId----TE~tF~peRl~~-ia~~~  184 (344)
T PLN03187        127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYID----TEGTFRPDRIVP-IAERF  184 (344)
T ss_pred             eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEE----cCCCCCHHHHHH-HHHHc
Confidence            46779999999999999999754321      124667776    333344544443 44444

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=96.92  E-value=0.00067  Score=51.97  Aligned_cols=26  Identities=19%  Similarity=0.378  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +++|.|++|+|||||++.+++.+...
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~   26 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPN   26 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCcc
Confidence            37899999999999999998865443

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]

Probab=96.91  E-value=0.0059  Score=53.42  Aligned_cols=118  Identities=18%  Similarity=0.242  Sum_probs=62.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH-HH--hcCCCceEEEeccchhh---------hcCChHHHHHHHHHHHhcCCCCCCC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFS-KI--SRRFEGSYFAHNVREAE---------ETGKLADLRKELLSTLLNDGNMNKF   69 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~-~~--~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~   69 (329)
                      ++.+|.+.|.+|+|||-||....- +.  +..|..++.....-.+.         ....+...++.+...+..-...+..
T Consensus       244 dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEeKm~PWmq~i~DnLE~L~~~~~~  323 (436)
T COG1875         244 DIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEEKMGPWMQAIFDNLEVLFSPNEP  323 (436)
T ss_pred             CCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhhhccchHHHHHhHHHHHhccccc
Confidence            568999999999999999987653 22  23344444333211111         1122333344444433222211111


Q ss_pred             CCcchHHHH----------hhhcCc---eEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           70 PNIGLNFQS----------KRLTRK---KVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        70 ~~~~~~~l~----------~~~~~~---~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      .+.....+.          .+.+++   +-+||+|+..+  +..+..++...   +.|++|++|.-..
T Consensus       324 ~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR~---G~GsKIVl~gd~a  388 (436)
T COG1875         324 GDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTRA---GEGSKIVLTGDPA  388 (436)
T ss_pred             chHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHhc---cCCCEEEEcCCHH
Confidence            111111111          123333   45999999975  45577666664   6799998887644

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.91  E-value=0.0074  Score=49.65  Aligned_cols=25  Identities=28%  Similarity=0.351  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||.+.++...
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~Gl~   50 (205)
T cd03226          26 GEIIALTGKNGAGKTTLAKILAGLI   50 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999998743

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK14530 adenylate kinase; Provisional

Probab=96.90  E-value=0.00099  Score=55.34  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.|+|.|++|+||||+++.+++.+
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~   27 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEF   27 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3568999999999999999998876

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=96.90  E-value=0.0016  Score=53.80  Aligned_cols=29  Identities=17%  Similarity=0.271  Sum_probs=25.9

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      +++++++|+|+.|+|||||..++++....
T Consensus        20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~   48 (207)
T TIGR00073        20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKD   48 (207)
T ss_pred             cCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            47899999999999999999999987654

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PRK14737 gmk guanylate kinase; Provisional

Probab=96.89  E-value=0.00089  Score=54.14  Aligned_cols=26  Identities=23%  Similarity=0.270  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +.++++|+||+|+|||||++.+.+..
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            46899999999999999999998764

>PRK10875 recD exonuclease V subunit alpha; Provisional

Probab=96.89  E-value=0.0043  Score=59.34  Aligned_cols=27  Identities=22%  Similarity=0.219  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .++.+|+|.+|+||||++..+...+..
T Consensus       167 ~~~~vItGgpGTGKTt~v~~ll~~l~~  193 (615)
T PRK10875        167 RRISVISGGPGTGKTTTVAKLLAALIQ  193 (615)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999886643

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=96.88  E-value=0.0015  Score=54.58  Aligned_cols=35  Identities=23%  Similarity=0.347  Sum_probs=25.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      +..+|+|+|+||.|||||+..+...+.++-..+..
T Consensus        28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaV   62 (266)
T PF03308_consen   28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAV   62 (266)
T ss_dssp             -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEE
T ss_pred             CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEE
Confidence            45789999999999999999999987765333333

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.88  E-value=0.0013  Score=54.64  Aligned_cols=25  Identities=36%  Similarity=0.454  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      +|+|.|++|+||||||+.++..+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~   25 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSR   25 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            5889999999999999999988753

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=96.88  E-value=0.00087  Score=51.82  Aligned_cols=23  Identities=30%  Similarity=0.450  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +|+|.|++|+||||+|+.+++.+
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999875

>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A

Probab=96.87  E-value=0.00042  Score=59.54  Aligned_cols=26  Identities=27%  Similarity=0.429  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+-|.++|++|+|||++++.+.....
T Consensus        33 ~~pvLl~G~~GtGKT~li~~~l~~l~   58 (272)
T PF12775_consen   33 GRPVLLVGPSGTGKTSLIQNFLSSLD   58 (272)
T ss_dssp             TEEEEEESSTTSSHHHHHHHHHHCST
T ss_pred             CCcEEEECCCCCchhHHHHhhhccCC
Confidence            35679999999999999999887543

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=96.87  E-value=0.0033  Score=51.22  Aligned_cols=28  Identities=29%  Similarity=0.291  Sum_probs=24.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+|+|.|+.|+||||+++.+++.+...
T Consensus         3 g~~IvieG~~GsGKsT~~~~L~~~l~~~   30 (195)
T TIGR00041         3 GMFIVIEGIDGAGKTTQANLLKKLLQEN   30 (195)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999999987653

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=96.87  E-value=0.0012  Score=56.07  Aligned_cols=26  Identities=27%  Similarity=0.479  Sum_probs=23.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +|+++|++|+||||+|+.+++.+...
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~   26 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEK   26 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            48999999999999999999887654

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=96.87  E-value=0.0013  Score=50.97  Aligned_cols=27  Identities=26%  Similarity=0.345  Sum_probs=23.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |+.++|+|+|-+|+||||+.+.+.+..
T Consensus         2 k~~kvvvitGVpGvGKTTVl~~~~~~l   28 (189)
T COG2019           2 KGRKVVVITGVPGVGKTTVLKIALKEL   28 (189)
T ss_pred             CCceEEEEEcCCCCChHHHHHHHHHHH
Confidence            345899999999999999999887766

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.87  E-value=0.0063  Score=49.52  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||++.++..
T Consensus        33 Ge~~~l~G~nGsGKSTLl~~l~G~   56 (192)
T cd03232          33 GTLTALMGESGAGKTTLLDVLAGR   56 (192)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999863

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR00959 ffh signal recognition particle protein

Probab=96.86  E-value=0.014  Score=53.48  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.++.++|++|+||||.+..++..+.
T Consensus        99 p~vi~~vG~~GsGKTTtaakLA~~l~  124 (428)
T TIGR00959        99 PTVILMVGLQGSGKTTTCGKLAYYLK  124 (428)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            57899999999999999999998865

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.85  E-value=0.0059  Score=52.07  Aligned_cols=94  Identities=13%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      -+|.|+||.|+||||-.......+.++++..+.-.       ..+++-+.+.. +.+-.+........-..+.++..+++
T Consensus       126 GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTI-------EDPIE~vh~sk-kslI~QREvG~dT~sF~~aLraALRe  197 (353)
T COG2805         126 GLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTI-------EDPIEYVHESK-KSLINQREVGRDTLSFANALRAALRE  197 (353)
T ss_pred             ceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEe-------cCchHhhhcch-HhhhhHHHhcccHHHHHHHHHHHhhc
Confidence            47899999999999999888888877766655543       11122111111 11111111001111155677778888


Q ss_pred             ceEEEEEecCCChhhHHHHhcc
Q 020206           84 KKVLIVFDDVNHPRQIEFLIGN  105 (329)
Q Consensus        84 ~~~LlvlDdv~~~~~~~~l~~~  105 (329)
                      -+=+|++-+..+.+.+..-+..
T Consensus       198 DPDVIlvGEmRD~ETi~~ALtA  219 (353)
T COG2805         198 DPDVILVGEMRDLETIRLALTA  219 (353)
T ss_pred             CCCEEEEeccccHHHHHHHHHH
Confidence            8889999999888877655444

>PRK14529 adenylate kinase; Provisional

Probab=96.85  E-value=0.0045  Score=51.35  Aligned_cols=23  Identities=26%  Similarity=0.336  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHh
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      |+|.|++|+||||+++.+++.+.
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~   25 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYD   25 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            78899999999999999998874

>PRK07276 DNA polymerase III subunit delta'; Validated

Probab=96.85  E-value=0.078  Score=45.89  Aligned_cols=66  Identities=18%  Similarity=0.289  Sum_probs=43.8

Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHhc-CCCeEEEecCCChhhhHHHHhh
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALINC-GVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~~-~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                      .+-++|+|+++  +.+....++..+.+-+++..+|++|.+. .+++.. +..+.+.+.+ +.++..+++..
T Consensus       104 ~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~~  173 (290)
T PRK07276        104 KQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLEQ  173 (290)
T ss_pred             CcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHHH
Confidence            44589999995  4567888888887766667666666554 344333 3446777766 66666677653

>PRK05818 DNA polymerase III subunit delta'; Validated

Probab=96.85  E-value=0.24  Score=41.97  Aligned_cols=55  Identities=11%  Similarity=0.086  Sum_probs=36.1

Q ss_pred             eEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHhcC-CCeEEEecCC
Q 020206           85 KVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALINCG-VNKIYQIKEL  139 (329)
Q Consensus        85 ~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~~~-~~~~~~l~~l  139 (329)
                      .=++|+|+++  +.+....++..+.+-+++..+|++|.+. .++.... ..+.+.+.+.
T Consensus        89 ~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~  147 (261)
T PRK05818         89 KKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSK  147 (261)
T ss_pred             CEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCCh
Confidence            3477888885  5677888888888777777777777655 3333332 2345666655

>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]

Probab=96.85  E-value=0.019  Score=51.05  Aligned_cols=55  Identities=15%  Similarity=0.129  Sum_probs=37.5

Q ss_pred             CCeEEEecCCChhhhHHHHhhhhcC----CCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          130 VNKIYQIKELVHVDALKLLNQCAFG----RDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       130 ~~~~~~l~~l~~~e~~~ll~~~~~~----~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ...+++++..+.+|+.+++.-....    ...+.   ++-.+++.=..+|||--++.++..+
T Consensus       402 pf~pi~v~nYt~~E~~~~i~YYl~~nwl~kkv~~---Ee~~kql~fLSngNP~l~~~lca~~  460 (461)
T KOG3928|consen  402 PFVPIEVENYTLDEFEALIDYYLQSNWLLKKVPG---EENIKQLYFLSNGNPSLMERLCAFL  460 (461)
T ss_pred             CcCccccCCCCHHHHHHHHHHHHHhhHHHhhcCc---ccchhhhhhhcCCCHHHHHHHHHhc
Confidence            3356788899999999887654411    11221   2346778888899998887777665

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=96.84  E-value=0.00081  Score=50.95  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .|-|.|+|-||+|||||+.++++..
T Consensus         7 ~PNILvtGTPG~GKstl~~~lae~~   31 (176)
T KOG3347|consen    7 RPNILVTGTPGTGKSTLAERLAEKT   31 (176)
T ss_pred             CCCEEEeCCCCCCchhHHHHHHHHh
Confidence            4678999999999999999998753

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=96.84  E-value=0.0064  Score=49.10  Aligned_cols=27  Identities=30%  Similarity=0.446  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+++|.|++|+||||+++.+...+..
T Consensus        18 ~~~i~i~G~~GsGKstla~~l~~~l~~   44 (184)
T TIGR00455        18 GVVIWLTGLSGSGKSTIANALEKKLES   44 (184)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999988754

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=96.84  E-value=0.0021  Score=52.64  Aligned_cols=35  Identities=26%  Similarity=0.369  Sum_probs=27.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ..+++|+|++|+|||||++.++..+.......+++
T Consensus        24 ~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~l   58 (198)
T PRK03846         24 GVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLL   58 (198)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence            46899999999999999999998775543334444

>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]

Probab=96.83  E-value=0.0066  Score=49.75  Aligned_cols=25  Identities=28%  Similarity=0.197  Sum_probs=21.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..|.||||+|||||.+.++..+...
T Consensus       140 tLiigpP~~GKTTlLRdiaR~~s~g  164 (308)
T COG3854         140 TLIIGPPQVGKTTLLRDIARLLSDG  164 (308)
T ss_pred             eEEecCCCCChHHHHHHHHHHhhcc
Confidence            5789999999999999999876554

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.83  E-value=0.0025  Score=53.38  Aligned_cols=36  Identities=25%  Similarity=0.210  Sum_probs=28.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~   38 (329)
                      ..++.|.|++|+|||+|+.+++.....+ -..++|+.
T Consensus        19 gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs   55 (226)
T PF06745_consen   19 GSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS   55 (226)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE
Confidence            3578999999999999999999766555 56677766

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>TIGR02655 circ_KaiC circadian clock protein KaiC

Probab=96.83  E-value=0.0019  Score=60.44  Aligned_cols=35  Identities=20%  Similarity=0.240  Sum_probs=29.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .++.|.|++|+|||+|+.+++.....+-..++|+.
T Consensus       264 s~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s  298 (484)
T TIGR02655       264 SIILATGATGTGKTLLVSKFLENACANKERAILFA  298 (484)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            57899999999999999999998766656667765

Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.

>PRK13808 adenylate kinase; Provisional

Probab=96.83  E-value=0.0042  Score=54.51  Aligned_cols=22  Identities=27%  Similarity=0.335  Sum_probs=20.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |+|.|+||+||||++..+++.+
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~y   24 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQY   24 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999998875

>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]

Probab=96.83  E-value=0.011  Score=50.55  Aligned_cols=27  Identities=30%  Similarity=0.363  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      +..+.|||++|.|||-+|+.++....-
T Consensus       166 Pkg~ll~GppGtGKTlla~~Vaa~mg~  192 (388)
T KOG0651|consen  166 PKGLLLYGPPGTGKTLLARAVAATMGV  192 (388)
T ss_pred             CceeEEeCCCCCchhHHHHHHHHhcCC
Confidence            567899999999999999999887543

>PRK06761 hypothetical protein; Provisional

Probab=96.82  E-value=0.0018  Score=55.64  Aligned_cols=28  Identities=29%  Similarity=0.312  Sum_probs=25.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      .++++|.|++|+||||+++.+++.+...
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~   30 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQN   30 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcC
Confidence            4789999999999999999999987654

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=96.82  E-value=0.0033  Score=51.25  Aligned_cols=27  Identities=26%  Similarity=0.396  Sum_probs=23.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      .+|+|.|+.|+||||+++.+++.+...
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~   27 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEAR   27 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            368999999999999999999988654

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.82  E-value=0.0038  Score=52.68  Aligned_cols=36  Identities=17%  Similarity=0.116  Sum_probs=29.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|++|+|||+|+.+++.....+-..++|+.
T Consensus        21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs   56 (237)
T TIGR03877        21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA   56 (237)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            367899999999999999999876545556677766

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H

Probab=96.81  E-value=0.0023  Score=49.01  Aligned_cols=24  Identities=29%  Similarity=0.290  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .-|.|+|++|+||+.+|+.++..-
T Consensus        22 ~pvli~GE~GtGK~~~A~~lh~~~   45 (138)
T PF14532_consen   22 SPVLITGEPGTGKSLLARALHRYS   45 (138)
T ss_dssp             S-EEEECCTTSSHHHHHHCCHHTT
T ss_pred             CcEEEEcCCCCCHHHHHHHHHhhc
Confidence            457899999999999999877653

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=96.81  E-value=0.0096  Score=49.35  Aligned_cols=24  Identities=25%  Similarity=0.292  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++|.|+.|+|||||++.++..+
T Consensus        38 e~~~i~G~nGsGKSTLl~~i~G~~   61 (214)
T PRK13543         38 EALLVQGDNGAGKTTLLRVLAGLL   61 (214)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCCC
Confidence            478999999999999999998643

>PRK13947 shikimate kinase; Provisional

Probab=96.81  E-value=0.0011  Score=52.78  Aligned_cols=24  Identities=25%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .|+|+|++|+||||+++.+++.+.
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg   26 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLS   26 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhC
Confidence            489999999999999999998864

>smart00072 GuKc Guanylate kinase homologues

Probab=96.81  E-value=0.0011  Score=53.60  Aligned_cols=30  Identities=27%  Similarity=0.449  Sum_probs=24.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE   32 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~   32 (329)
                      .+.++|.||+|+|||||+..+++.....|.
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~   31 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFE   31 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceE
Confidence            578999999999999999999877543443

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=96.81  E-value=0.0021  Score=53.39  Aligned_cols=23  Identities=17%  Similarity=-0.098  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .+++.|+|+.|.||||+.+.++.
T Consensus        31 g~~~~itG~N~~GKStll~~i~~   53 (222)
T cd03287          31 GYCQIITGPNMGGKSSYIRQVAL   53 (222)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46889999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK00698 tmk thymidylate kinase; Validated

Probab=96.81  E-value=0.0039  Score=51.22  Aligned_cols=29  Identities=21%  Similarity=0.268  Sum_probs=25.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..++|+|.|+.|+||||+++.+++.+...
T Consensus         2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~   30 (205)
T PRK00698          2 RGMFITIEGIDGAGKSTQIELLKELLEQQ   30 (205)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            35789999999999999999999987544

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.80  E-value=0.001  Score=54.47  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +|+|.|++|+|||||++.+...+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998876

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA

Probab=96.80  E-value=0.0097  Score=58.64  Aligned_cols=34  Identities=15%  Similarity=-0.084  Sum_probs=26.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      .++++|+|.+|+||||+++.+.+.+......+.+
T Consensus       368 ~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~  401 (744)
T TIGR02768       368 GDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIG  401 (744)
T ss_pred             CCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            4689999999999999999998877654333333

This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=96.80  E-value=0.0015  Score=54.90  Aligned_cols=30  Identities=20%  Similarity=0.306  Sum_probs=22.0

Q ss_pred             EEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            8 IWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         8 I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      |.||+|+||||+++.+.+.+......+..+
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~v   30 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIV   30 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEE
Confidence            689999999999999999876654444443

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=96.79  E-value=0.00099  Score=53.71  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +|+|.|.+|+||||||+.+++.+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            58999999999999999998875

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.021  Score=54.77  Aligned_cols=151  Identities=11%  Similarity=0.051  Sum_probs=76.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchh-hhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREA-EETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ..+++.++|++|+|||++++.++..+.-++    +-.+.-+. .+...                   ....-+...+.+.
T Consensus       430 ~~~~vLLhG~~g~GK~t~V~~vas~lg~h~----~evdc~el~~~s~~-------------------~~etkl~~~f~~a  486 (953)
T KOG0736|consen  430 LNPSVLLHGPPGSGKTTVVRAVASELGLHL----LEVDCYELVAESAS-------------------HTETKLQAIFSRA  486 (953)
T ss_pred             cceEEEEeCCCCCChHHHHHHHHHHhCCce----EeccHHHHhhcccc-------------------hhHHHHHHHHHHH
Confidence            457899999999999999999998875432    21111100 00000                   0001122333333


Q ss_pred             hcCceEEEEEecCC-------Ch------hhHHHHhc-ccCC-CCCCcEEEEEeCch-hHHHh--cCCCeEEEecCCChh
Q 020206           81 LTRKKVLIVFDDVN-------HP------RQIEFLIG-NLDW-FASGSRILITARDK-QALIN--CGVNKIYQIKELVHV  142 (329)
Q Consensus        81 ~~~~~~LlvlDdv~-------~~------~~~~~l~~-~l~~-~~~~~~ilitsr~~-~~~~~--~~~~~~~~l~~l~~~  142 (329)
                      -...+.+|.+=|++       ..      ..++.++. -... ..++..++.|+.+. .....  ......+.++.++++
T Consensus       487 ~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~  566 (953)
T KOG0736|consen  487 RRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEE  566 (953)
T ss_pred             hhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHH
Confidence            34466677776652       11      12333333 1111 12233344444332 21111  123457888999999


Q ss_pred             hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch
Q 020206          143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      |=.++|+-......-   ..+-..+.++.+|.|.-.
T Consensus       567 qRl~iLq~y~~~~~~---n~~v~~k~~a~~t~gfs~  599 (953)
T KOG0736|consen  567 QRLEILQWYLNHLPL---NQDVNLKQLARKTSGFSF  599 (953)
T ss_pred             HHHHHHHHHHhcccc---chHHHHHHHHHhcCCCCH
Confidence            999999877622111   111225566777776543

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=96.79  E-value=0.0021  Score=52.67  Aligned_cols=97  Identities=16%  Similarity=0.172  Sum_probs=45.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcC-ChHHHHHHHHHHHhcCCCCCCCCC----cchHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG-KLADLRKELLSTLLNDGNMNKFPN----IGLNF   76 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~----~~~~~   76 (329)
                      .+.++++.|++|+|||+++..+...+.  ....+.+. ...+.... ....+..    . ...... ....    .+...
T Consensus        14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~-~D~~r~~~p~~~~~~~----~-~~~~~~-~~~~~~a~~~~~~   84 (199)
T PF06414_consen   14 KPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVID-ADEFRQFHPDYDELLK----A-DPDEAS-ELTQKEASRLAEK   84 (199)
T ss_dssp             S-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE--GGGGGGGSTTHHHHHH----H-HCCCTH-HHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEe-hHHHHHhccchhhhhh----h-hhhhhH-HHHHHHHHHHHHH
Confidence            467888999999999999999977764  23444443 33332222 1222222    1 111000 0000    03344


Q ss_pred             HHhhhcCceEEEEEecCC-ChhhHHHHhcccC
Q 020206           77 QSKRLTRKKVLIVFDDVN-HPRQIEFLIGNLD  107 (329)
Q Consensus        77 l~~~~~~~~~LlvlDdv~-~~~~~~~l~~~l~  107 (329)
                      +.+....++.=||+|..- +.+....++..+.
T Consensus        85 ~~~~a~~~~~nii~E~tl~~~~~~~~~~~~~k  116 (199)
T PF06414_consen   85 LIEYAIENRYNIIFEGTLSNPSKLRKLIREAK  116 (199)
T ss_dssp             HHHHHHHCT--EEEE--TTSSHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEecCCCChhHHHHHHHHHH
Confidence            444444566778889874 4455554555544

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.78  E-value=0.0015  Score=49.32  Aligned_cols=26  Identities=19%  Similarity=0.259  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..++.+.|+.|+|||||++.+++.+.
T Consensus        22 ~~~i~l~G~lGaGKTtl~~~l~~~lg   47 (133)
T TIGR00150        22 GTVVLLKGDLGAGKTTLVQGLLQGLG   47 (133)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            45899999999999999999998753

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.036  Score=46.36  Aligned_cols=25  Identities=28%  Similarity=0.352  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +=|..+||+|.|||-+|+..+.+..
T Consensus       206 KGvLmYGPPGTGKTlmARAcAaqT~  230 (424)
T KOG0652|consen  206 KGVLMYGPPGTGKTLMARACAAQTN  230 (424)
T ss_pred             CceEeeCCCCCcHHHHHHHHHHhcc
Confidence            4578999999999999999876644

>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor

Probab=96.78  E-value=0.0083  Score=47.60  Aligned_cols=22  Identities=32%  Similarity=0.371  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|.|+|++|+||+.+|+.+.+.
T Consensus        24 pVlI~GE~GtGK~~lA~~IH~~   45 (168)
T PF00158_consen   24 PVLITGETGTGKELLARAIHNN   45 (168)
T ss_dssp             -EEEECSTTSSHHHHHHHHHHC
T ss_pred             CEEEEcCCCCcHHHHHHHHHHh
Confidence            4679999999999999999874

These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=96.78  E-value=0.0015  Score=51.69  Aligned_cols=25  Identities=24%  Similarity=0.344  Sum_probs=22.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.||+|+|||||++.+.++.
T Consensus         4 G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           4 GLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhc
Confidence            4689999999999999999998875

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]

Probab=96.78  E-value=0.0089  Score=51.21  Aligned_cols=36  Identities=19%  Similarity=0.190  Sum_probs=31.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++=|+|+.|+|||++|.+++-.....-...+|+.
T Consensus        60 g~ItEiyG~~gsGKT~lal~~~~~aq~~g~~a~fID   95 (279)
T COG0468          60 GRITEIYGPESSGKTTLALQLVANAQKPGGKAAFID   95 (279)
T ss_pred             ceEEEEecCCCcchhhHHHHHHHHhhcCCCeEEEEe
Confidence            367789999999999999999988777777888887

>PRK13768 GTPase; Provisional

Probab=96.78  E-value=0.0022  Score=54.60  Aligned_cols=34  Identities=18%  Similarity=0.151  Sum_probs=27.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .+++|.|++|+||||++..++..+......+..+
T Consensus         3 ~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i   36 (253)
T PRK13768          3 YIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIV   36 (253)
T ss_pred             EEEEEECCCCccHHHHHHHHHHHHHhcCCceEEE
Confidence            5789999999999999999998876654444444

>TIGR01447 recD exodeoxyribonuclease V, alpha subunit

Probab=96.76  E-value=0.0085  Score=57.19  Aligned_cols=27  Identities=22%  Similarity=0.197  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .++.+|+|.+|+||||++..++..+..
T Consensus       160 ~~~~vitGgpGTGKTt~v~~ll~~l~~  186 (586)
T TIGR01447       160 SNFSLITGGPGTGKTTTVARLLLALVK  186 (586)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            478999999999999999999876644

This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.

>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=96.76  E-value=0.097  Score=44.34  Aligned_cols=185  Identities=11%  Similarity=0.143  Sum_probs=99.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhc------CCCceEEEeccch--------------hhh---cCChHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAHNVRE--------------AEE---TGKLADLRKELLS   58 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~~~~~--------------~~~---~~~~~~~~~~i~~   58 (329)
                      +.|-..++||+|.||-|.+..+.+.+-.      +-....|......              +.+   ...-.-+++++++
T Consensus        33 d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellK  112 (351)
T KOG2035|consen   33 DFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLK  112 (351)
T ss_pred             CCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHH
Confidence            3567889999999999999988876422      1222223221110              000   0111223344444


Q ss_pred             HHhcCCCCCCCCCcchHHHHhhhcCceE-EEEEecCCCh-----hhHHHHhcccCCCCCCcEEEEEeCch-hHHHhc-CC
Q 020206           59 TLLNDGNMNKFPNIGLNFQSKRLTRKKV-LIVFDDVNHP-----RQIEFLIGNLDWFASGSRILITARDK-QALINC-GV  130 (329)
Q Consensus        59 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~-LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~~-~~  130 (329)
                      ........            +....+++ ++|+-.+++.     ..++.-+...   ...+++|+..... .+.... ..
T Consensus       113 evAQt~qi------------e~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkY---s~~~RlIl~cns~SriIepIrSR  177 (351)
T KOG2035|consen  113 EVAQTQQI------------ETQGQRPFKVVVINEADELTRDAQHALRRTMEKY---SSNCRLILVCNSTSRIIEPIRSR  177 (351)
T ss_pred             HHHhhcch------------hhccccceEEEEEechHhhhHHHHHHHHHHHHHH---hcCceEEEEecCcccchhHHhhh
Confidence            43322210            01112333 5566555321     2233333332   4678877644332 111111 22


Q ss_pred             CeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCC-----------CHHHHHHHH
Q 020206          131 NKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK-----------RKEVWENAI  199 (329)
Q Consensus       131 ~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~-----------~~~~~~~~~  199 (329)
                      .-.++++..+++|....+...+....-.-  ..+.+.+|+++++||-.---++....+-+           +.-+|+.++
T Consensus       178 Cl~iRvpaps~eeI~~vl~~v~~kE~l~l--p~~~l~rIa~kS~~nLRrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i  255 (351)
T KOG2035|consen  178 CLFIRVPAPSDEEITSVLSKVLKKEGLQL--PKELLKRIAEKSNRNLRRALLMLEAVRVNNEPFTANSQVIPKPDWEIYI  255 (351)
T ss_pred             eeEEeCCCCCHHHHHHHHHHHHHHhcccC--cHHHHHHHHHHhcccHHHHHHHHHHHHhccccccccCCCCCCccHHHHH
Confidence            33678999999999999998874333222  26789999999999977665665554331           345676666


Q ss_pred             Hhhc
Q 020206          200 SKLE  203 (329)
Q Consensus       200 ~~l~  203 (329)
                      .+..
T Consensus       256 ~e~a  259 (351)
T KOG2035|consen  256 QEIA  259 (351)
T ss_pred             HHHH
Confidence            6553

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=96.76  E-value=0.011  Score=50.34  Aligned_cols=25  Identities=20%  Similarity=0.368  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||++.++...
T Consensus        30 Ge~~~I~G~NGsGKSTLl~~i~Gl~   54 (251)
T PRK09544         30 GKILTLLGPNGAGKSTLVRVVLGLV   54 (251)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578999999999999999998653

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=96.76  E-value=0.0025  Score=53.36  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +..|+||||+|||+++..++..+
T Consensus        19 ~~~i~GpPGTGKT~~l~~~i~~~   41 (236)
T PF13086_consen   19 ITLIQGPPGTGKTTTLASIIAQL   41 (236)
T ss_dssp             -EEEE-STTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCChHHHHHHHHHHh
Confidence            58999999999999888888876

>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.0087  Score=50.76  Aligned_cols=29  Identities=31%  Similarity=0.402  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      ++=|+++|++|.|||-||+.+++.....|
T Consensus       219 PKGVIlyG~PGTGKTLLAKAVANqTSATF  247 (440)
T KOG0726|consen  219 PKGVILYGEPGTGKTLLAKAVANQTSATF  247 (440)
T ss_pred             CCeeEEeCCCCCchhHHHHHHhcccchhh
Confidence            45689999999999999999988755443

>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []

Probab=96.75  E-value=0.019  Score=49.13  Aligned_cols=102  Identities=17%  Similarity=0.297  Sum_probs=55.1

Q ss_pred             HHHHhhhcCceEEEEEecCC----ChhhHHHHhcccCCC-------CCCcEEEEEeCchhHHHhcCCCeEEEecCCChhh
Q 020206           75 NFQSKRLTRKKVLIVFDDVN----HPRQIEFLIGNLDWF-------ASGSRILITARDKQALINCGVNKIYQIKELVHVD  143 (329)
Q Consensus        75 ~~l~~~~~~~~~LlvlDdv~----~~~~~~~l~~~l~~~-------~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~e  143 (329)
                      +.+.+..++.++-||+|+.-    ....+..|...++.-       +.|..++|.-.+...-...+ ..   +..|--..
T Consensus       187 NiF~~Aa~~GPiaIImDECMe~Lg~~~~is~fFHAlPSKL~~rfp~CTgy~VfVVLHNmnPR~d~g-GN---I~~LKiqA  262 (369)
T PF02456_consen  187 NIFAQAAKKGPIAIIMDECMEKLGSHKSISKFFHALPSKLHDRFPKCTGYYVFVVLHNMNPRRDIG-GN---IANLKIQA  262 (369)
T ss_pred             HHHHHHHhcCCEEEEhHHHHHHhcCCCChhHHHhcCcHHHhhhccCCceeEEEEEeccCCcccccC-CC---ccchhhhc
Confidence            45566677789999999872    223455555554421       13445666555543222211 11   22221111


Q ss_pred             hHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhc
Q 020206          144 ALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLF  188 (329)
Q Consensus       144 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~  188 (329)
                      -..++        .+.....+..+-|..++.|.|.+|..+.+-+.
T Consensus       263 K~HIi--------Sp~~~p~QlsRFin~yt~glp~~i~~LLKdif  299 (369)
T PF02456_consen  263 KCHII--------SPKMHPSQLSRFINNYTKGLPTAISLLLKDIF  299 (369)
T ss_pred             eeeee--------cCCCCHHHHHHHHHHhccCCChhHHHHHHHHH
Confidence            11111        22223446678888999999999988776553

During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription

>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional

Probab=96.75  E-value=0.0022  Score=55.10  Aligned_cols=34  Identities=24%  Similarity=0.220  Sum_probs=28.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +++.|+|++|+|||||+.+++..++++. .+..+-
T Consensus         2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IK   35 (274)
T PRK14493          2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVK   35 (274)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEE
Confidence            5899999999999999999999998876 444443

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.75  E-value=0.0083  Score=50.62  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.||.|+|||||.+.++.-
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~   51 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGL   51 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcc
Confidence            467899999999999999998864

>PRK00300 gmk guanylate kinase; Provisional

Probab=96.74  E-value=0.0014  Score=53.94  Aligned_cols=26  Identities=19%  Similarity=0.313  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...+++|+|++|+|||||++.++..+
T Consensus         4 ~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          4 RGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            35689999999999999999998864

>smart00763 AAA_PrkA PrkA AAA domain

Probab=96.74  E-value=0.0016  Score=57.57  Aligned_cols=27  Identities=19%  Similarity=0.218  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .+++.|+||+|+||||||..+++.+..
T Consensus        78 r~il~L~GPPGsGKStla~~La~~l~~  104 (361)
T smart00763       78 KQILYLLGPVGGGKSSLVECLKRGLEE  104 (361)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            478899999999999999999987644

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=96.74  E-value=0.001  Score=52.60  Aligned_cols=22  Identities=32%  Similarity=0.643  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++|+|++|+||||+++.+++.+
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l   22 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRL   22 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhc
Confidence            4789999999999999998875

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=96.74  E-value=0.034  Score=45.78  Aligned_cols=24  Identities=38%  Similarity=0.570  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+++|.|+.|+|||||++.++...
T Consensus        35 ~~~~i~G~nGsGKSTLl~~l~Gl~   58 (207)
T cd03369          35 EKIGIVGRTGAGKSTLILALFRFL   58 (207)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccc
Confidence            578999999999999999998643

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=96.74  E-value=0.0056  Score=50.19  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...++|.|+.|+|||||.+.++..
T Consensus        26 Ge~~~i~G~nGsGKStLl~~l~G~   49 (200)
T cd03217          26 GEVHALMGPNGSGKSTLAKTIMGH   49 (200)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999998875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=96.74  E-value=0.0049  Score=51.68  Aligned_cols=36  Identities=11%  Similarity=0.023  Sum_probs=27.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|++|+|||||+.+++.....+-..++|++
T Consensus        24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~   59 (230)
T PRK08533         24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS   59 (230)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            358899999999999999888876644445556654

>PLN02459 probable adenylate kinase

Probab=96.73  E-value=0.0068  Score=51.35  Aligned_cols=23  Identities=26%  Similarity=0.318  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++|.|++|+||||+++.+++.+
T Consensus        31 ~ii~~G~PGsGK~T~a~~la~~~   53 (261)
T PLN02459         31 NWVFLGCPGVGKGTYASRLSKLL   53 (261)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            36778999999999999998875

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=96.72  E-value=0.0023  Score=63.18  Aligned_cols=111  Identities=19%  Similarity=0.196  Sum_probs=55.2

Q ss_pred             CceEEEEEecCC---ChhhH----HHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEecC--CChhhhHHHHhhhhc
Q 020206           83 RKKVLIVFDDVN---HPRQI----EFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKE--LVHVDALKLLNQCAF  153 (329)
Q Consensus        83 ~~~~LlvlDdv~---~~~~~----~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~--l~~~e~~~ll~~~~~  153 (329)
                      ..+.|+++|+..   ++..-    ..++..+.  ..++.+|+||..............+.-..  ++.+ ......+...
T Consensus       406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~--~~~~~vIitTH~~el~~~~~~~~~v~~~~~~~d~~-~l~~~Ykl~~  482 (782)
T PRK00409        406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR--KRGAKIIATTHYKELKALMYNREGVENASVEFDEE-TLRPTYRLLI  482 (782)
T ss_pred             CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--HCCCEEEEECChHHHHHHHhcCCCeEEEEEEEecC-cCcEEEEEee
Confidence            467799999983   22222    22333332  24778999999865443322111111111  1221 2222222221


Q ss_pred             CCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhh
Q 020206          154 GRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKL  202 (329)
Q Consensus       154 ~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l  202 (329)
                      +....     ..+-.+++. .|+|-.+..-|..+.......+..++..+
T Consensus       483 G~~g~-----S~a~~iA~~-~Glp~~ii~~A~~~~~~~~~~~~~li~~l  525 (782)
T PRK00409        483 GIPGK-----SNAFEIAKR-LGLPENIIEEAKKLIGEDKEKLNELIASL  525 (782)
T ss_pred             CCCCC-----cHHHHHHHH-hCcCHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            22121     225555555 48888888888777665555565665554

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=96.72  E-value=0.0015  Score=48.49  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=19.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||||.+.++..
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~   22 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGG   22 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECcCCCCHHHHHHHHhcC
Confidence            789999999999999999864

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK14526 adenylate kinase; Provisional

Probab=96.71  E-value=0.0076  Score=49.75  Aligned_cols=22  Identities=32%  Similarity=0.409  Sum_probs=19.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++|.|++|+||||+++.+++.+
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~   24 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNEL   24 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6799999999999999998765

>COG5635 Predicted NTPase (NACHT family) [Signal transduction mechanisms]

Probab=96.70  E-value=0.0025  Score=63.59  Aligned_cols=137  Identities=18%  Similarity=0.208  Sum_probs=72.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCC----CceEEEeccchh-hhcCChH-HHHHHHHHHHhcCCCCCCCCCcchHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRF----EGSYFAHNVREA-EETGKLA-DLRKELLSTLLNDGNMNKFPNIGLNFQS   78 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~l~   78 (329)
                      -++|+|.+|+||||+...++-......    +..++....... ..+.... .+..-+...+.....    .........
T Consensus       224 ~~~Ilg~pGsGKTtfl~~lA~~~~~~~~~~~~vpi~~~l~~~~~~~~~~~q~~~~~~l~~~~~~~~~----~~~~~~~~~  299 (824)
T COG5635         224 KLLILGAPGSGKTTFLQRLALWLAQRTLEPEDVPIFLLLNAFALARKFEKQLSLIDYLAEELFSQGI----AKQLIEAHQ  299 (824)
T ss_pred             heeeecCCCCCceehHHHHHHHhccCcCCcccCceeeechhHHHhhhhHhhccHHHHHHHHHhccCC----cchhhHHHH
Confidence            468999999999999999987653332    222232211000 0011111 222222222222221    111222224


Q ss_pred             hhhcCceEEEEEecCCChhh---------HHHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEecCCChhhhHHHHh
Q 020206           79 KRLTRKKVLIVFDDVNHPRQ---------IEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIKELVHVDALKLLN  149 (329)
Q Consensus        79 ~~~~~~~~LlvlDdv~~~~~---------~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~~l~~~e~~~ll~  149 (329)
                      +.+...++++.+|.++....         +..+++.    -+..++|+|+|....-........+++..+.++.....+.
T Consensus       300 e~l~~g~~llLlDGlDe~~~~~~~~~~~~i~~f~~~----~~~~~~iltcR~~~~~~~~~~f~~~ei~~~~~~~i~~~~~  375 (824)
T COG5635         300 ELLKTGKLLLLLDGLDELEPKNQRALIREINKFLQE----YPDAQVLLTCRPDTYKEEFKGFAVFEIYKFLDLQINQFIL  375 (824)
T ss_pred             HHHhccchhhHhhccchhhhhhHHHHHHHHHHHhhh----ccCCeEEEEeccchhhhhhhhhhhccchhhhHHHHHHHHH
Confidence            66778899999999854321         3333333    3578899999876443333334456666666665554443

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=96.70  E-value=0.0016  Score=50.82  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |.|+|++|+||||+++.+++.+
T Consensus         2 i~l~G~~GsGKstla~~la~~l   23 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKAL   23 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHh
Confidence            7899999999999999998876

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK13949 shikimate kinase; Provisional

Probab=96.69  E-value=0.0017  Score=51.70  Aligned_cols=25  Identities=24%  Similarity=0.421  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.|+|+|++|+||||+++.+++.+.
T Consensus         2 ~~I~liG~~GsGKstl~~~La~~l~   26 (169)
T PRK13949          2 ARIFLVGYMGAGKTTLGKALARELG   26 (169)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3589999999999999999998764

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=96.67  E-value=0.0031  Score=55.48  Aligned_cols=36  Identities=25%  Similarity=0.336  Sum_probs=28.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ...++.++|++|+||||++..++..+...-..+..+
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li  148 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLA  148 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEE
Confidence            357999999999999999999999887653344443

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=96.67  E-value=0.017  Score=47.36  Aligned_cols=23  Identities=22%  Similarity=-0.044  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|+|+.|.|||||.+.++..
T Consensus        30 ~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          30 RLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             eEEEEECCCCCccHHHHHHHHHH
Confidence            68999999999999999999853

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd00984 DnaB_C DnaB helicase C terminal domain

Probab=96.67  E-value=0.0055  Score=51.80  Aligned_cols=35  Identities=23%  Similarity=0.130  Sum_probs=28.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~   38 (329)
                      .++.|.|++|+|||+++.+++...... -..++|++
T Consensus        14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s   49 (242)
T cd00984          14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFS   49 (242)
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEe
Confidence            588999999999999999998876554 45666665

The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.

>PRK13948 shikimate kinase; Provisional

Probab=96.67  E-value=0.0019  Score=51.91  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+.|+++|+.|+||||+++.+++.+.
T Consensus        10 ~~~I~LiG~~GsGKSTvg~~La~~lg   35 (182)
T PRK13948         10 VTWVALAGFMGTGKSRIGWELSRALM   35 (182)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHcC
Confidence            57899999999999999999998864

>PRK13973 thymidylate kinase; Provisional

Probab=96.67  E-value=0.0062  Score=50.47  Aligned_cols=37  Identities=11%  Similarity=0.030  Sum_probs=29.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..+.|+|-|..|+||||+++.+++.+...-..++...
T Consensus         2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~   38 (213)
T PRK13973          2 RGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTR   38 (213)
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            4578999999999999999999999876544444443

>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.66  E-value=0.023  Score=49.86  Aligned_cols=30  Identities=27%  Similarity=0.359  Sum_probs=25.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE   32 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~   32 (329)
                      ++-|.++||+|+|||-||+.++.+-...|-
T Consensus       127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~fI  156 (386)
T KOG0737|consen  127 PKGILLYGPPGTGKTMLAKAIAKEAGANFI  156 (386)
T ss_pred             CccceecCCCCchHHHHHHHHHHHcCCCcc
Confidence            456889999999999999999998665553

>TIGR03263 guanyl_kin guanylate kinase

Probab=96.66  E-value=0.0014  Score=52.69  Aligned_cols=24  Identities=29%  Similarity=0.400  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++++|.|++|+|||||++.++...
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccC
Confidence            579999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PRK14738 gmk guanylate kinase; Provisional

Probab=96.66  E-value=0.0018  Score=53.41  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=21.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+.++|+|++|+|||||+..+.+.
T Consensus        12 ~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         12 KPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhc
Confidence            3578999999999999999998654

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=96.65  E-value=0.023  Score=47.98  Aligned_cols=23  Identities=30%  Similarity=0.291  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||.+.++..
T Consensus        29 e~~~l~G~nGsGKSTLl~~l~G~   51 (242)
T TIGR03411        29 ELRVIIGPNGAGKTTMMDVITGK   51 (242)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999864

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.019  Score=56.63  Aligned_cols=77  Identities=14%  Similarity=0.208  Sum_probs=48.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHHHhhhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRLTR   83 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~~~~   83 (329)
                      -..+.||.|+|||.||+.+++.+-+..+.-+-+.          +.+... +.+..+.   ++....- ....+.+.+++
T Consensus       593 wflflGpdgvGKt~lAkaLA~~~Fgse~~~IriD----------mse~~e-vskligs---p~gyvG~e~gg~Lteavrr  658 (898)
T KOG1051|consen  593 WFLFLGPDGVGKTELAKALAEYVFGSEENFIRLD----------MSEFQE-VSKLIGS---PPGYVGKEEGGQLTEAVKR  658 (898)
T ss_pred             EEEEECCCchhHHHHHHHHHHHHcCCccceEEec----------hhhhhh-hhhccCC---CcccccchhHHHHHHHHhc
Confidence            4678999999999999999999866655555544          222222 2222111   1122211 44567777777


Q ss_pred             ce-EEEEEecCCC
Q 020206           84 KK-VLIVFDDVNH   95 (329)
Q Consensus        84 ~~-~LlvlDdv~~   95 (329)
                      ++ .+|.||||+.
T Consensus       659 rP~sVVLfdeIEk  671 (898)
T KOG1051|consen  659 RPYSVVLFEEIEK  671 (898)
T ss_pred             CCceEEEEechhh
Confidence            76 4888999964

>cd00046 DEXDc DEAD-like helicases superfamily

Probab=96.65  E-value=0.012  Score=44.44  Aligned_cols=34  Identities=15%  Similarity=-0.036  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhc--CCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISR--RFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~--~~~~~~~~~   38 (329)
                      .+.|.|++|+|||+.+..++.....  ....++++.
T Consensus         2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~   37 (144)
T cd00046           2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLA   37 (144)
T ss_pred             CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEc
Confidence            4789999999999999999887654  345555554

A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.

>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB

Probab=96.65  E-value=0.0027  Score=49.67  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +++|+|+.|+|||||+..++..++.+
T Consensus         1 vi~i~G~~gsGKTtl~~~l~~~l~~~   26 (155)
T TIGR00176         1 VLQIVGPKNSGKTTLIERLVKALKAR   26 (155)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            57899999999999999999988765

This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=96.65  E-value=0.012  Score=48.40  Aligned_cols=25  Identities=16%  Similarity=0.206  Sum_probs=22.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+++|.|+.|+|||||++.++....
T Consensus        34 e~~~i~G~nGsGKSTLl~~l~G~~~   58 (202)
T cd03233          34 EMVLVLGRPGSGCSTLLKALANRTE   58 (202)
T ss_pred             cEEEEECCCCCCHHHHHHHhcccCC
Confidence            5789999999999999999987654

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.65  E-value=0.016  Score=54.64  Aligned_cols=151  Identities=17%  Similarity=0.161  Sum_probs=76.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++=|.++||+|+|||.||+.++....-     -+++    .+    -+++    ...+...+..     -..+.+.+..+
T Consensus       183 PkGvlLvGpPGTGKTLLAkAvAgEA~V-----PFf~----iS----GS~F----VemfVGvGAs-----RVRdLF~qAkk  240 (596)
T COG0465         183 PKGVLLVGPPGTGKTLLAKAVAGEAGV-----PFFS----IS----GSDF----VEMFVGVGAS-----RVRDLFEQAKK  240 (596)
T ss_pred             ccceeEecCCCCCcHHHHHHHhcccCC-----Ccee----cc----chhh----hhhhcCCCcH-----HHHHHHHHhhc
Confidence            455889999999999999999876322     1121    00    0011    1111111110     01233444455


Q ss_pred             CceEEEEEecCCCh----------------hhHHHHhcccCCCC-CCcEEEE--EeCchh----HHHhcCCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHP----------------RQIEFLIGNLDWFA-SGSRILI--TARDKQ----ALINCGVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~----------------~~~~~l~~~l~~~~-~~~~ili--tsr~~~----~~~~~~~~~~~~l~~l  139 (329)
                      +-+|+|++|.++..                +.+..++.-..... +...|++  |.|...    .++..+..+.+.++..
T Consensus       241 ~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~P  320 (596)
T COG0465         241 NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELP  320 (596)
T ss_pred             cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccchHhhcCCCCcceeeecCCc
Confidence            56899999998431                22333433332222 2233444  333321    1222235566777777


Q ss_pred             ChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCchH
Q 020206          140 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                      +-..-.+++.-+..... .+...    ...|++.+-|.-.|
T Consensus       321 Di~gRe~IlkvH~~~~~l~~~Vd----l~~iAr~tpGfsGA  357 (596)
T COG0465         321 DIKGREQILKVHAKNKPLAEDVD----LKKIARGTPGFSGA  357 (596)
T ss_pred             chhhHHHHHHHHhhcCCCCCcCC----HHHHhhhCCCcccc
Confidence            76666677764442222 12222    44577887776654

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.64  E-value=0.0073  Score=48.24  Aligned_cols=24  Identities=25%  Similarity=0.443  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++|.|+.|+|||||++.++...
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~   50 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIILGLL   50 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999988754

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PTZ00035 Rad51 protein; Provisional

Probab=96.64  E-value=0.0096  Score=52.86  Aligned_cols=26  Identities=15%  Similarity=0.167  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..++.|+|++|+|||+|+.+++-...
T Consensus       118 G~iteI~G~~GsGKT~l~~~l~~~~q  143 (337)
T PTZ00035        118 GSITELFGEFRTGKTQLCHTLCVTCQ  143 (337)
T ss_pred             CeEEEEECCCCCchhHHHHHHHHHhc
Confidence            35788999999999999999986543

>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]

Probab=96.64  E-value=0.0029  Score=49.44  Aligned_cols=35  Identities=26%  Similarity=0.214  Sum_probs=29.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .+++.|+|..|+|||||+.++...++.+...+..+
T Consensus         2 ~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~i   36 (161)
T COG1763           2 MKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATV   36 (161)
T ss_pred             CcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEE
Confidence            47899999999999999999999988775544444

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.64  E-value=0.014  Score=49.97  Aligned_cols=36  Identities=19%  Similarity=0.222  Sum_probs=27.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ...+.++|++|+||||++..++..+..+-..+.++.
T Consensus        75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~  110 (270)
T PRK06731         75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFIT  110 (270)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEe
Confidence            368999999999999999999887755433444443

>PRK14532 adenylate kinase; Provisional

Probab=96.63  E-value=0.0016  Score=52.81  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |+|.|++|+||||+++.+++.+
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~   24 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEER   24 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999998765

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=96.63  E-value=0.0044  Score=54.46  Aligned_cols=108  Identities=14%  Similarity=0.173  Sum_probs=56.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHHHhhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRL   81 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~~   81 (329)
                      ...++|.|+.|+|||||++.++..+.... .++.+.+..+.....      .... .+............ ..+.+...+
T Consensus       144 ~~~ili~G~tGsGKTTll~al~~~~~~~~-~iv~ied~~El~~~~------~~~~-~l~~~~~~~~~~~~~~~~~l~~~L  215 (308)
T TIGR02788       144 RKNIIISGGTGSGKTTFLKSLVDEIPKDE-RIITIEDTREIFLPH------PNYV-HLFYSKGGQGLAKVTPKDLLQSCL  215 (308)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHccCCccc-cEEEEcCccccCCCC------CCEE-EEEecCCCCCcCccCHHHHHHHHh
Confidence            45899999999999999999887654332 233333222211110      0000 00000110011111 345555667


Q ss_pred             cCceEEEEEecCCChhhHHHHhcccCCCCCCcE-EEEEeCch
Q 020206           82 TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSR-ILITARDK  122 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~-ilitsr~~  122 (329)
                      +..+-.|++|++...+.+. ++....   .|.. ++.|+...
T Consensus       216 r~~pd~ii~gE~r~~e~~~-~l~a~~---~g~~~~i~T~Ha~  253 (308)
T TIGR02788       216 RMRPDRIILGELRGDEAFD-FIRAVN---TGHPGSITTLHAG  253 (308)
T ss_pred             cCCCCeEEEeccCCHHHHH-HHHHHh---cCCCeEEEEEeCC
Confidence            7778899999998766554 444432   2222 35555543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=96.63  E-value=0.0031  Score=54.18  Aligned_cols=36  Identities=14%  Similarity=0.171  Sum_probs=29.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      ++..++.|.|.+|+|||||+..++..+.......+.
T Consensus       102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI  137 (290)
T PRK10463        102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVI  137 (290)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEE
Confidence            367899999999999999999999988766544433

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=96.62  E-value=0.012  Score=48.34  Aligned_cols=24  Identities=25%  Similarity=0.263  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...++|.|+.|+|||||.+.++..
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~G~   49 (201)
T cd03231          26 GEALQVTGPNGSGKTTLLRILAGL   49 (201)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999988864

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.62  E-value=0.0024  Score=52.70  Aligned_cols=26  Identities=31%  Similarity=0.530  Sum_probs=22.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+.|.|++|+|||+|+.+++.....
T Consensus        16 qr~~I~g~~g~GKt~Ll~~i~~~~~~   41 (215)
T PF00006_consen   16 QRIGIFGGAGVGKTVLLQEIANNQDA   41 (215)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHCTT
T ss_pred             CEEEEEcCcccccchhhHHHHhcccc
Confidence            45789999999999999999998754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....

>cd03114 ArgK-like The function of this protein family is unkown

Probab=96.61  E-value=0.0031  Score=48.93  Aligned_cols=33  Identities=24%  Similarity=0.414  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ++.+.|++|+||||++..++..+...-..+.++
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii   33 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITALRARGKRVAVL   33 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            478999999999999999998876554444443

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK12338 hypothetical protein; Provisional

Probab=96.61  E-value=0.0021  Score=56.05  Aligned_cols=26  Identities=23%  Similarity=0.355  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.+|.|.|.+|+||||+|..+++++
T Consensus         3 ~p~ii~i~G~sGsGKST~a~~la~~l   28 (319)
T PRK12338          3 KPYVILIGSASGIGKSTIASELARTL   28 (319)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHC
Confidence            46799999999999999999999875

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=96.61  E-value=0.0023  Score=49.80  Aligned_cols=28  Identities=29%  Similarity=0.270  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFE   32 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~   32 (329)
                      .+.|+||+|+|||||.+.+|.-+.-.-.
T Consensus        31 ~iaitGPSG~GKStllk~va~Lisp~~G   58 (223)
T COG4619          31 FIAITGPSGCGKSTLLKIVASLISPTSG   58 (223)
T ss_pred             eEEEeCCCCccHHHHHHHHHhccCCCCc
Confidence            5789999999999999999986554433

>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.043  Score=48.57  Aligned_cols=26  Identities=27%  Similarity=0.253  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      +-|.++||+|.|||-||+.++.....
T Consensus       246 kgvLm~GPPGTGKTlLAKAvATEc~t  271 (491)
T KOG0738|consen  246 KGVLMVGPPGTGKTLLAKAVATECGT  271 (491)
T ss_pred             ceeeeeCCCCCcHHHHHHHHHHhhcC
Confidence            35789999999999999999988753

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=96.60  E-value=0.0029  Score=52.69  Aligned_cols=24  Identities=21%  Similarity=-0.024  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      +.+++.|+|+.|.||||+.+.++.
T Consensus        29 ~~~~~~l~G~n~~GKstll~~i~~   52 (222)
T cd03285          29 KSRFLIITGPNMGGKSTYIRQIGV   52 (222)
T ss_pred             CCeEEEEECCCCCChHHHHHHHHH
Confidence            457899999999999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13975 thymidylate kinase; Provisional

Probab=96.60  E-value=0.0021  Score=52.41  Aligned_cols=26  Identities=31%  Similarity=0.305  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .+|+|.|+.|+||||+++.+++.+..
T Consensus         3 ~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          3 KFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            68999999999999999999998764

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=96.60  E-value=0.0022  Score=51.19  Aligned_cols=26  Identities=19%  Similarity=0.332  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +.+.|+|.|++|+||||+++.+++.+
T Consensus         3 ~~~~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          3 EKRNIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CCCEEEEECCCCcCHHHHHHHHHHHc
Confidence            34679999999999999999998875

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=96.59  E-value=0.0018  Score=52.69  Aligned_cols=22  Identities=27%  Similarity=0.292  Sum_probs=20.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |+|.|++|+||||+++.+++.+
T Consensus         2 I~i~G~pGsGKst~a~~La~~~   23 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKY   23 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHc
Confidence            7899999999999999998874

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=96.59  E-value=0.014  Score=47.53  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++|.|+.|+|||||.+.++...
T Consensus        36 e~~~l~G~nGsGKStLl~~i~Gl~   59 (194)
T cd03213          36 ELTAIMGPSGAGKSTLLNALAGRR   59 (194)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998754

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=96.59  E-value=0.004  Score=49.99  Aligned_cols=35  Identities=17%  Similarity=0.165  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      |++.|+|.-|+|||||.+++.+...+.....+...
T Consensus         1 Pv~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~n   35 (178)
T PF02492_consen    1 PVIIITGFLGSGKTTLINHLLKRNRQGERVAVIVN   35 (178)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEEC
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEc
Confidence            68999999999999999999973333333344444

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=96.59  E-value=0.014  Score=48.96  Aligned_cols=25  Identities=20%  Similarity=0.162  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...++|.|+.|+|||||.+.++..+
T Consensus        26 Ge~~~i~G~nGsGKSTLl~~l~g~~   50 (232)
T cd03300          26 GEFFTLLGPSGCGKTTLLRLIAGFE   50 (232)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999998754

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes

Probab=96.58  E-value=0.004  Score=48.90  Aligned_cols=27  Identities=30%  Similarity=0.502  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +++.|+|.+|+|||||+..+...+...
T Consensus         2 ~vi~i~G~~gsGKTTli~~L~~~l~~~   28 (159)
T cd03116           2 KVIGFVGYSGSGKTTLLEKLIPALSAR   28 (159)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            589999999999999999999987655

In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=96.58  E-value=0.0022  Score=52.94  Aligned_cols=23  Identities=35%  Similarity=0.463  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -+++|+|++|+|||||++.++.-
T Consensus        34 e~lgivGeSGsGKSTL~r~l~Gl   56 (252)
T COG1124          34 ETLGIVGESGSGKSTLARLLAGL   56 (252)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhcc
Confidence            46899999999999999999864

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=96.57  E-value=0.0021  Score=51.94  Aligned_cols=26  Identities=27%  Similarity=0.395  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|-||=|+||||||+.+++.+.
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~   29 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLG   29 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhC
Confidence            47899999999999999999999876

>TIGR01448 recD_rel helicase, putative, RecD/TraA family

Probab=96.57  E-value=0.026  Score=55.49  Aligned_cols=28  Identities=25%  Similarity=0.187  Sum_probs=24.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      .++++|+|.+|+||||+++.+.+.+...
T Consensus       338 ~~~~iitGgpGTGKTt~l~~i~~~~~~~  365 (720)
T TIGR01448       338 HKVVILTGGPGTGKTTITRAIIELAEEL  365 (720)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999998877654

This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.

>PRK13946 shikimate kinase; Provisional

Probab=96.56  E-value=0.0023  Score=51.72  Aligned_cols=25  Identities=16%  Similarity=0.345  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.|++.|++|+||||+++.+++.+
T Consensus        10 ~~~I~l~G~~GsGKsti~~~LA~~L   34 (184)
T PRK13946         10 KRTVVLVGLMGAGKSTVGRRLATML   34 (184)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999999887

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.56  E-value=0.0038  Score=52.38  Aligned_cols=36  Identities=22%  Similarity=0.153  Sum_probs=28.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|++|+|||+|+.+++.........++|+.
T Consensus        20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is   55 (229)
T TIGR03881        20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT   55 (229)
T ss_pred             CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence            357899999999999999998876544555677766

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=96.56  E-value=0.0098  Score=54.31  Aligned_cols=22  Identities=36%  Similarity=0.558  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -.+.|.||+|+|||||++.+..
T Consensus       363 ~~lgIIGPSgSGKSTLaR~lvG  384 (580)
T COG4618         363 EALGIIGPSGSGKSTLARLLVG  384 (580)
T ss_pred             ceEEEECCCCccHHHHHHHHHc
Confidence            3688999999999999998875

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.56  E-value=0.0094  Score=55.43  Aligned_cols=28  Identities=18%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+++|+|++|+||||++.+++..+..+
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~  377 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQ  377 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            4689999999999999999999876554

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.56  E-value=0.0041  Score=54.79  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=28.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ...+|.|+|++|+|||||+..+...+...-..+..+
T Consensus        55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi   90 (332)
T PRK09435         55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVL   90 (332)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            456899999999999999999998877653333333

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=96.56  E-value=0.008  Score=53.55  Aligned_cols=24  Identities=21%  Similarity=0.329  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      -++.|+|++|+||||+.+.+....
T Consensus       410 dvvaVvGqSGaGKttllRmi~G~~  433 (593)
T COG2401         410 DVVAVVGQSGAGKTTLLRMILGAQ  433 (593)
T ss_pred             CeEEEEecCCCCcchHHHHHHHHh
Confidence            478999999999999999988653

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=96.55  E-value=0.0021  Score=56.34  Aligned_cols=24  Identities=29%  Similarity=0.303  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++|++.|++|+||||+|+.+++.+
T Consensus         3 ~liil~G~pGSGKSTla~~L~~~~   26 (300)
T PHA02530          3 KIILTVGVPGSGKSTWAREFAAKN   26 (300)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHHC
Confidence            688999999999999999998775

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.54  E-value=0.0021  Score=50.80  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=17.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|+|.+|+|||||+..+++.
T Consensus         2 I~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHc
Confidence            789999999999999999877

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=96.54  E-value=0.0033  Score=46.80  Aligned_cols=26  Identities=19%  Similarity=0.152  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +..+|.+.|+=|+|||||++.+++.+
T Consensus        14 ~g~vi~L~GdLGaGKTtf~r~l~~~l   39 (123)
T PF02367_consen   14 PGDVILLSGDLGAGKTTFVRGLARAL   39 (123)
T ss_dssp             S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence            46799999999999999999998875

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.54  E-value=0.0027  Score=45.96  Aligned_cols=22  Identities=32%  Similarity=0.394  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~   24 (329)
                      ...++|.|++|+|||||+..+.
T Consensus        15 ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          15 KVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             CEEEEEEcCCCCCHHHHHHHhh
Confidence            3678999999999999999975

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=96.54  E-value=0.0039  Score=44.12  Aligned_cols=26  Identities=35%  Similarity=0.622  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ++++.|.+|+||||++..++..+++.
T Consensus         1 ~~~~~g~~G~Gktt~~~~l~~~l~~~   26 (99)
T cd01983           1 VIVVTGKGGVGKTTLAANLAAALAKR   26 (99)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            47899999999999999999988763

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase

Probab=96.53  E-value=0.0039  Score=51.64  Aligned_cols=34  Identities=18%  Similarity=0.359  Sum_probs=27.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      |+|+|.|-||+||||++..++..+.+.-..+..+
T Consensus         1 ~~iav~gKGGvGKTt~~~nLA~~la~~G~rvLli   34 (212)
T cd02117           1 RQIAIYGKGGIGKSTTSQNLSAALAEMGKKVLQV   34 (212)
T ss_pred             CEEEEECCCcCcHHHHHHHHHHHHHHCCCcEEEE
Confidence            5789999999999999999999877653334443

Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.

>TIGR02236 recomb_radA DNA repair and recombination protein RadA

Probab=96.53  E-value=0.0064  Score=53.56  Aligned_cols=36  Identities=17%  Similarity=0.171  Sum_probs=27.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc------CCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~   38 (329)
                      ..++-|+|++|+|||+|+.+++.....      .-..++|+.
T Consensus        95 g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~  136 (310)
T TIGR02236        95 QAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID  136 (310)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence            357889999999999999999887542      123677776

This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.53  E-value=0.0047  Score=48.46  Aligned_cols=116  Identities=16%  Similarity=0.155  Sum_probs=57.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      .+++|.|+.|.|||||++.++..+.. ..+.+++... .... ......    .......... +..+...-.+...+..
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~~-~~G~i~~~~~-~~~~-~~~~~~----~~~i~~~~ql-S~G~~~r~~l~~~l~~   97 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLKP-TSGEILIDGK-DIAK-LPLEEL----RRRIGYVPQL-SGGQRQRVALARALLL   97 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCC-CccEEEECCE-Eccc-CCHHHH----HhceEEEeeC-CHHHHHHHHHHHHHhc
Confidence            57899999999999999999875432 3344444311 1100 001111    1111100000 0011122233444445


Q ss_pred             ceEEEEEecCC---ChhhHHHHhcccCCC-CCCcEEEEEeCchhHHHh
Q 020206           84 KKVLIVFDDVN---HPRQIEFLIGNLDWF-ASGSRILITARDKQALIN  127 (329)
Q Consensus        84 ~~~LlvlDdv~---~~~~~~~l~~~l~~~-~~~~~ilitsr~~~~~~~  127 (329)
                      .+-++++|+..   +......+...+... .++..++++|.+......
T Consensus        98 ~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~  145 (157)
T cd00267          98 NPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAEL  145 (157)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence            67799999983   333333333322211 224678888887765554

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=96.53  E-value=0.0034  Score=52.65  Aligned_cols=31  Identities=19%  Similarity=0.272  Sum_probs=25.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEG   33 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~   33 (329)
                      +..+.|.||+|+||||+++.+...+..+...
T Consensus        19 p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~p   49 (366)
T KOG1532|consen   19 PVIILVVGMAGSGKTTFMQRLNSHLHAKKTP   49 (366)
T ss_pred             CcEEEEEecCCCCchhHHHHHHHHHhhccCC
Confidence            5678899999999999999998877666543

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=96.53  E-value=0.0074  Score=56.32  Aligned_cols=90  Identities=14%  Similarity=0.089  Sum_probs=53.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      -++.|+|+.|+||||+...+...+......++-+-+..+..    +..    + .+...  . +.........++..++.
T Consensus       243 GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~----~~~----~-~q~~v--~-~~~g~~f~~~lr~~LR~  310 (486)
T TIGR02533       243 GIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQ----IEG----I-GQIQV--N-PKIGLTFAAGLRAILRQ  310 (486)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeee----cCC----C-ceEEE--c-cccCccHHHHHHHHHhc
Confidence            47899999999999999988776654323333332221111    000    0 01000  0 01111245667777888


Q ss_pred             ceEEEEEecCCChhhHHHHhcc
Q 020206           84 KKVLIVFDDVNHPRQIEFLIGN  105 (329)
Q Consensus        84 ~~~LlvlDdv~~~~~~~~l~~~  105 (329)
                      .+=.|++.++.+.+.....+..
T Consensus       311 dPDvI~vGEiRd~eta~~a~~a  332 (486)
T TIGR02533       311 DPDIIMVGEIRDLETAQIAIQA  332 (486)
T ss_pred             CCCEEEEeCCCCHHHHHHHHHH
Confidence            8889999999988876655444

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]

Probab=96.52  E-value=0.022  Score=55.33  Aligned_cols=123  Identities=20%  Similarity=0.204  Sum_probs=66.4

Q ss_pred             EEEcCCCCcHHHHHHHHHHHHhcC-C-----CceEEEeccchhhh----cCChHHHHHHHHHHHhcCCCCCCCCCcchHH
Q 020206            7 GIWGIGGVGKTAIAGAFFSKISRR-F-----EGSYFAHNVREAEE----TGKLADLRKELLSTLLNDGNMNKFPNIGLNF   76 (329)
Q Consensus         7 ~I~G~~GiGKTtLa~~~~~~~~~~-~-----~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   76 (329)
                      +++|++|+|||+++.-++.++.+. .     +..++-.+++..-.    ...+++-++.++                   
T Consensus       195 vLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl-------------------  255 (786)
T COG0542         195 VLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVL-------------------  255 (786)
T ss_pred             eEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHH-------------------
Confidence            578999999999999999986543 1     22222222221111    122222222222                   


Q ss_pred             HHhhhcCceEEEEEecCCC------h----hhHHHH-hcccCCCCCCcE-EEEEeCchhHHH------hcCCCeEEEecC
Q 020206           77 QSKRLTRKKVLIVFDDVNH------P----RQIEFL-IGNLDWFASGSR-ILITARDKQALI------NCGVNKIYQIKE  138 (329)
Q Consensus        77 l~~~~~~~~~LlvlDdv~~------~----~~~~~l-~~~l~~~~~~~~-ilitsr~~~~~~------~~~~~~~~~l~~  138 (329)
                       .+.....+++|++|.++.      .    -+...+ .+.+.  ....+ |=.||-+++--.      .....+.+.+..
T Consensus       256 -~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA--RGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~E  332 (786)
T COG0542         256 -KEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA--RGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDE  332 (786)
T ss_pred             -HHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh--cCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCC
Confidence             222223489999999831      1    122222 23332  12233 445666653211      113557888999


Q ss_pred             CChhhhHHHHhhh
Q 020206          139 LVHVDALKLLNQC  151 (329)
Q Consensus       139 l~~~e~~~ll~~~  151 (329)
                      .+.+++..+++-.
T Consensus       333 Ps~e~ti~ILrGl  345 (786)
T COG0542         333 PSVEDTIAILRGL  345 (786)
T ss_pred             CCHHHHHHHHHHH
Confidence            9999999888743

>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional

Probab=96.52  E-value=0.15  Score=45.17  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|.|+|++|+||+++|+.+...
T Consensus        31 pVlI~GE~GtGK~~lA~~iH~~   52 (326)
T PRK11608         31 PVLIIGERGTGKELIASRLHYL   52 (326)
T ss_pred             CEEEECCCCCcHHHHHHHHHHh
Confidence            4789999999999999988753

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=96.51  E-value=0.004  Score=53.00  Aligned_cols=36  Identities=22%  Similarity=0.302  Sum_probs=29.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..+|+|+|.||+|||||...+...+.++-..+..+.
T Consensus        51 a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlA   86 (323)
T COG1703          51 AHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLA   86 (323)
T ss_pred             CcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEE
Confidence            458999999999999999999998877655555443

>TIGR01287 nifH nitrogenase iron protein

Probab=96.51  E-value=0.0033  Score=54.31  Aligned_cols=35  Identities=17%  Similarity=0.358  Sum_probs=27.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      |.|+|+|-||+||||++..++..+...-..+..+.
T Consensus         1 ~~ia~~gKGGVGKTT~a~nLA~~La~~G~~VlliD   35 (275)
T TIGR01287         1 RQIAIYGKGGIGKSTTTQNIAAALAEMGKKVMIVG   35 (275)
T ss_pred             CeeEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            57899999999999999999998776543444443

This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=96.51  E-value=0.042  Score=47.42  Aligned_cols=26  Identities=27%  Similarity=0.579  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ...++|.|+.|.|||||++.++..+.
T Consensus        30 Ge~~~IvG~nGsGKSTLl~~L~gl~~   55 (275)
T cd03289          30 GQRVGLLGRTGSGKSTLLSAFLRLLN   55 (275)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhhhcC
Confidence            34789999999999999999987653

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=96.50  E-value=0.0025  Score=50.71  Aligned_cols=23  Identities=35%  Similarity=0.446  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +|+|+|++|+||||+|+.+++.+
T Consensus         2 iI~i~G~~GSGKstia~~la~~l   24 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKL   24 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            68999999999999999998865

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=96.50  E-value=0.0021  Score=52.00  Aligned_cols=24  Identities=21%  Similarity=0.281  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++|.|++|+|||||++.++...
T Consensus         3 ~~i~l~G~sGsGKsTl~~~l~~~~   26 (186)
T PRK10078          3 KLIWLMGPSGSGKDSLLAALRQRE   26 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHhccC
Confidence            478999999999999999997754

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=96.50  E-value=0.0042  Score=52.08  Aligned_cols=31  Identities=26%  Similarity=0.308  Sum_probs=26.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFE   32 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~   32 (329)
                      .+.+++|.|++|+|||||++.++..+.....
T Consensus        32 ~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g   62 (229)
T PRK09270         32 RRTIVGIAGPPGAGKSTLAEFLEALLQQDGE   62 (229)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence            3568999999999999999999988765543

>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]

Probab=96.49  E-value=0.026  Score=48.22  Aligned_cols=27  Identities=22%  Similarity=0.309  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++-+++++|.+|+||.-.++.+++...
T Consensus       109 KPLvLSfHG~tGTGKN~Va~iiA~n~~  135 (344)
T KOG2170|consen  109 KPLVLSFHGWTGTGKNYVAEIIAENLY  135 (344)
T ss_pred             CCeEEEecCCCCCchhHHHHHHHHHHH
Confidence            466889999999999999999998753

>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF

Probab=96.49  E-value=0.023  Score=50.36  Aligned_cols=23  Identities=30%  Similarity=0.283  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      -|.|+|++|+||+++|+.+...-
T Consensus        24 pVLI~GE~GtGK~~lAr~iH~~s   46 (329)
T TIGR02974        24 PVLIIGERGTGKELIAARLHYLS   46 (329)
T ss_pred             CEEEECCCCChHHHHHHHHHHhc
Confidence            47899999999999999887643

Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH

>PRK05439 pantothenate kinase; Provisional

Probab=96.48  E-value=0.0031  Score=54.91  Aligned_cols=28  Identities=32%  Similarity=0.348  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .+-+|+|.|++|+||||+|+.+...+..
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~  112 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQALLSR  112 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3568999999999999999999886654

>PRK13764 ATPase; Provisional

Probab=96.47  E-value=0.0075  Score=57.25  Aligned_cols=86  Identities=12%  Similarity=0.082  Sum_probs=48.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ...|.|+|++|+||||++..+++.+..+...+..+-+..+..-...        ..+....    . .+ ........++
T Consensus       257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~--------i~q~~~~----~-~~-~~~~~~~lLR  322 (602)
T PRK13764        257 AEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPE--------ITQYSKL----E-GS-MEETADILLL  322 (602)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCc--------ceEEeec----c-cc-HHHHHHHHHh
Confidence            3568999999999999999999887654322224332322211100        0000000    0 00 1111222255


Q ss_pred             CceEEEEEecCCChhhHHHH
Q 020206           83 RKKVLIVFDDVNHPRQIEFL  102 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~~~~~l  102 (329)
                      .++=.|++|++.+.+.++.+
T Consensus       323 ~rPD~IivGEiRd~Et~~~~  342 (602)
T PRK13764        323 VRPDYTIYDEMRKTEDFKIF  342 (602)
T ss_pred             hCCCEEEECCCCCHHHHHHH
Confidence            67779999999988887754

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.47  E-value=0.0033  Score=54.36  Aligned_cols=27  Identities=26%  Similarity=0.224  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+-+|+|.|++|+||||+++.+...+.
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~   87 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLS   87 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457899999999999999988876654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>PRK13826 Dtr system oriT relaxase; Provisional

Probab=96.46  E-value=0.025  Score=57.43  Aligned_cols=102  Identities=14%  Similarity=0.116  Sum_probs=55.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH-Hhh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ-SKR   80 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~   80 (329)
                      +.++++|+|.+|+||||+.+.+.+.+...-..++...     .    .......+-...+..       ...+..+ ...
T Consensus       396 ~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~A-----p----TgkAA~~L~e~~Gi~-------a~TIas~ll~~  459 (1102)
T PRK13826        396 PARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGA-----L----AGKAAEGLEKEAGIQ-------SRTLSSWELRW  459 (1102)
T ss_pred             cCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEc-----C----cHHHHHHHHHhhCCC-------eeeHHHHHhhh
Confidence            3578999999999999999999887654432233221     0    111111111111111       1111111 111


Q ss_pred             -----hcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCc
Q 020206           81 -----LTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARD  121 (329)
Q Consensus        81 -----~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~  121 (329)
                           .-..+.+||+|+..  +..++..++....  ..++++|+..=.
T Consensus       460 ~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~--~~garvVLVGD~  505 (1102)
T PRK13826        460 NQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVT--RAGAKLVLVGDP  505 (1102)
T ss_pred             ccCccCCCCCcEEEEECcccCCHHHHHHHHHHHH--hcCCEEEEECCH
Confidence                 11246799999984  4555666665543  357788877643

>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []

Probab=96.46  E-value=0.01  Score=51.95  Aligned_cols=36  Identities=19%  Similarity=0.167  Sum_probs=30.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++-|+|+.|+|||||+..+...+.......+|+.
T Consensus        53 G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID   88 (322)
T PF00154_consen   53 GRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFID   88 (322)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred             CceEEEeCCCCCchhhhHHHHHHhhhcccceeEEec
Confidence            478999999999999999999988776666777776

In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....

>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional

Probab=96.46  E-value=0.14  Score=50.33  Aligned_cols=24  Identities=33%  Similarity=0.342  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .-|.|+|++|+|||.+|+.+...-
T Consensus       400 ~pVLI~GE~GTGK~~lA~~ih~~s  423 (686)
T PRK15429        400 STVLILGETGTGKELIARAIHNLS  423 (686)
T ss_pred             CCEEEECCCCcCHHHHHHHHHHhc
Confidence            358899999999999999987754

>PRK04182 cytidylate kinase; Provisional

Probab=96.45  E-value=0.0027  Score=50.90  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +|+|.|++|+||||+++.+++.+
T Consensus         2 ~I~i~G~~GsGKstia~~la~~l   24 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHc
Confidence            68999999999999999998875

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=96.45  E-value=0.018  Score=50.46  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|.|||||.+.++..
T Consensus        29 ei~~l~G~NGaGKTTLl~~l~Gl   51 (301)
T TIGR03522        29 RIVGFLGPNGAGKSTTMKIITGY   51 (301)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999864

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK08356 hypothetical protein; Provisional

Probab=96.44  E-value=0.0032  Score=51.41  Aligned_cols=23  Identities=30%  Similarity=0.398  Sum_probs=20.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~   24 (329)
                      +..+|+|+|++|+||||+|+.+.
T Consensus         4 ~~~~i~~~G~~gsGK~t~a~~l~   26 (195)
T PRK08356          4 EKMIVGVVGKIAAGKTTVAKFFE   26 (195)
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH
Confidence            44678999999999999999984

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=96.44  E-value=0.0033  Score=50.34  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ...+++|+|++|+|||||++.++....
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            346899999999999999999988754

>PRK04301 radA DNA repair and recombination protein RadA; Validated

Probab=96.43  E-value=0.0072  Score=53.39  Aligned_cols=36  Identities=17%  Similarity=0.177  Sum_probs=27.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~   38 (329)
                      ..++-|+|++|+|||+|+.+++......      -..++|+.
T Consensus       102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~  143 (317)
T PRK04301        102 QSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID  143 (317)
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence            4578899999999999999999765322      13567766

>PRK04328 hypothetical protein; Provisional

Probab=96.42  E-value=0.0051  Score=52.30  Aligned_cols=36  Identities=17%  Similarity=0.112  Sum_probs=29.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|++|+|||+|+.+++.....+-..++|+.
T Consensus        23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis   58 (249)
T PRK04328         23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA   58 (249)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence            357899999999999999999887555556677765

>TIGR01817 nifA Nif-specific regulatory protein

Probab=96.42  E-value=0.033  Score=52.99  Aligned_cols=23  Identities=30%  Similarity=0.305  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      -|.|+|++|+|||++|+.+++.-
T Consensus       221 pvli~Ge~GtGK~~lA~~ih~~s  243 (534)
T TIGR01817       221 TVLLRGESGTGKELIAKAIHYLS  243 (534)
T ss_pred             CEEEECCCCccHHHHHHHHHHhC
Confidence            47899999999999999998764

This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=96.42  E-value=0.021  Score=55.04  Aligned_cols=25  Identities=24%  Similarity=0.474  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...++|+|++|+|||||++-++..+
T Consensus       376 G~~vaIvG~SGsGKSTL~~lL~g~~  400 (588)
T PRK11174        376 GQRIALVGPSGAGKTSLLNALLGFL  400 (588)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4578999999999999999998765

>PRK12678 transcription termination factor Rho; Provisional

Probab=96.42  E-value=0.011  Score=55.26  Aligned_cols=28  Identities=21%  Similarity=0.052  Sum_probs=23.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      ..+.|+|++|+|||+|++.+++.+...+
T Consensus       417 QR~LIvgpp~aGKTtLL~~IAn~i~~n~  444 (672)
T PRK12678        417 QRGLIVSPPKAGKTTILQNIANAITTNN  444 (672)
T ss_pred             CEeEEeCCCCCCHHHHHHHHHHHHhhcC
Confidence            3468999999999999999998765433

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=96.41  E-value=0.016  Score=55.90  Aligned_cols=25  Identities=24%  Similarity=0.295  Sum_probs=21.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...++|+|++|+|||||++-++..+
T Consensus       369 G~~~aIvG~sGsGKSTLl~ll~gl~  393 (582)
T PRK11176        369 GKTVALVGRSGSGKSTIANLLTRFY  393 (582)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcc
Confidence            3568999999999999999998754

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=96.41  E-value=0.0049  Score=50.60  Aligned_cols=24  Identities=17%  Similarity=-0.092  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++.|+|+.|.||||+.+.++..
T Consensus        29 ~~~~~l~G~n~~GKstll~~i~~~   52 (204)
T cd03282          29 SRFHIITGPNMSGKSTYLKQIALL   52 (204)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            478999999999999999988753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=96.41  E-value=0.031  Score=48.72  Aligned_cols=26  Identities=23%  Similarity=0.374  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..++++.|+.|.|||||.+.++..+.
T Consensus        31 Gei~gllG~NGAGKTTllk~l~gl~~   56 (293)
T COG1131          31 GEIFGLLGPNGAGKTTLLKILAGLLK   56 (293)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCcC
Confidence            35889999999999999999987653

>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase

Probab=96.40  E-value=0.0058  Score=52.59  Aligned_cols=35  Identities=17%  Similarity=0.363  Sum_probs=27.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++|+|.|-||+||||++..++..+...-..+..+.
T Consensus         2 ~~iav~~KGGvGKTT~~~nLA~~La~~G~kVlliD   36 (270)
T cd02040           2 RQIAIYGKGGIGKSTTTQNLSAALAEMGKKVMIVG   36 (270)
T ss_pred             cEEEEEeCCcCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            46777799999999999999998876544444444

Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.

>PRK02496 adk adenylate kinase; Provisional

Probab=96.40  E-value=0.003  Score=50.99  Aligned_cols=23  Identities=26%  Similarity=0.313  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++|.|++|+||||+++.+++.+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~   25 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHL   25 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998875

>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]

Probab=96.40  E-value=0.13  Score=49.14  Aligned_cols=145  Identities=12%  Similarity=0.132  Sum_probs=83.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh-----cCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS-----RRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS   78 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~   78 (329)
                      .++=|.|-+|+|||..+..+.+.++     ..-+...|+. .. .-.-..+.+++..|...+......   .....+.+.
T Consensus       423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yve-IN-gm~l~~~~~~Y~~I~~~lsg~~~~---~~~al~~L~  497 (767)
T KOG1514|consen  423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVE-IN-GLRLASPREIYEKIWEALSGERVT---WDAALEALN  497 (767)
T ss_pred             eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEE-Ec-ceeecCHHHHHHHHHHhcccCccc---HHHHHHHHH
Confidence            4678999999999999999988653     2233333332 00 112345778888887777665432   112344444


Q ss_pred             hhhc-----CceEEEEEecCCCh-----hhHHHHhcccCCCCCCcEEEE-EeCchhHH--Hhc-------CCCeEEEecC
Q 020206           79 KRLT-----RKKVLIVFDDVNHP-----RQIEFLIGNLDWFASGSRILI-TARDKQAL--INC-------GVNKIYQIKE  138 (329)
Q Consensus        79 ~~~~-----~~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ili-tsr~~~~~--~~~-------~~~~~~~l~~  138 (329)
                      .++.     .+.+++++|+++..     +-+-.++...  ..++++++| +--+...+  ..+       -+.+.+.+.+
T Consensus       498 ~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWp--t~~~sKLvvi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~p  575 (767)
T KOG1514|consen  498 FRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWP--TLKNSKLVVIAIANTMDLPERLLMNRVSSRLGLTRICFQP  575 (767)
T ss_pred             HhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCC--cCCCCceEEEEecccccCHHHHhccchhhhccceeeecCC
Confidence            4333     45789999998532     2222222221  134565443 32222111  111       1345788889


Q ss_pred             CChhhhHHHHhhhhcCC
Q 020206          139 LVHVDALKLLNQCAFGR  155 (329)
Q Consensus       139 l~~~e~~~ll~~~~~~~  155 (329)
                      .+.++..+++..++.+.
T Consensus       576 Yth~qLq~Ii~~RL~~~  592 (767)
T KOG1514|consen  576 YTHEQLQEIISARLKGL  592 (767)
T ss_pred             CCHHHHHHHHHHhhcch
Confidence            99999999999888443

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=96.39  E-value=0.017  Score=55.76  Aligned_cols=25  Identities=20%  Similarity=0.288  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...++|+|++|+|||||++-++..+
T Consensus       361 G~~v~IvG~sGsGKSTLl~lL~gl~  385 (588)
T PRK13657        361 GQTVAIVGPTGAGKSTLINLLQRVF  385 (588)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCc
Confidence            4578999999999999999988643

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.38  E-value=0.0049  Score=52.19  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=25.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      +|+|.|.+|+||||++..+.+.+...-..+..+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI   33 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVV   33 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEE
Confidence            589999999999999999998876543334443

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=96.38  E-value=0.0061  Score=50.07  Aligned_cols=34  Identities=32%  Similarity=0.458  Sum_probs=26.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .|+|+|-||+||||++..++.++.++..+.+...
T Consensus         2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~VLvV   35 (255)
T COG3640           2 KIAITGKGGVGKTTIAALLLKRLLSKGGYNVLVV   35 (255)
T ss_pred             eEEEecCCCccHHHHHHHHHHHHHhcCCceEEEE
Confidence            5899999999999999998877766654445444

>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins

Probab=96.38  E-value=0.0039  Score=54.94  Aligned_cols=35  Identities=26%  Similarity=0.177  Sum_probs=27.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      ..|.+.+.||+|+|||+||..+++.+..+.|+...
T Consensus        49 aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~i   83 (398)
T PF06068_consen   49 AGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSI   83 (398)
T ss_dssp             TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEE
T ss_pred             cCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEc
Confidence            35889999999999999999999999987775544

The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=96.37  E-value=0.006  Score=54.94  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=27.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      ....++|.|+||+|||.|.+.+.+.++.....+..
T Consensus        21 ~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~   55 (364)
T PF05970_consen   21 EGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLV   55 (364)
T ss_pred             CCcEEEEEcCCCCChhHHHHHHHHHhccccceEEE
Confidence            35678999999999999999999888765433333

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>PRK13889 conjugal transfer relaxase TraA; Provisional

Probab=96.37  E-value=0.029  Score=56.55  Aligned_cols=28  Identities=21%  Similarity=0.163  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+++|+|.+|+||||+.+.+.+.+...
T Consensus       362 ~~v~vv~G~AGTGKTT~l~~~~~~~e~~  389 (988)
T PRK13889        362 RDLGVVVGYAGTGKSAMLGVAREAWEAA  389 (988)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            3578899999999999988777665543

>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]

Probab=96.36  E-value=0.009  Score=52.14  Aligned_cols=35  Identities=23%  Similarity=0.156  Sum_probs=29.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      ..|.|.+.||+|+|||+||..+++.+..+-+++..
T Consensus        64 aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~i   98 (450)
T COG1224          64 AGRGILIVGPPGTGKTALAMGIARELGEDVPFVAI   98 (450)
T ss_pred             cccEEEEECCCCCcHHHHHHHHHHHhCCCCCceee
Confidence            45889999999999999999999999877665443

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=96.36  E-value=0.012  Score=48.32  Aligned_cols=52  Identities=23%  Similarity=0.237  Sum_probs=38.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELL   57 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~   57 (329)
                      ....|+|-|.-|+||||.++.+.+.+..+.-.+++..    .+....+.+.++.++
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~tr----EP~~~~ige~iR~~l   53 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTR----EPGGTPIGEKIRELL   53 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe----CCCCChHHHHHHHHH
Confidence            4578999999999999999999999988876777766    222344455555443

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=96.35  E-value=0.016  Score=55.14  Aligned_cols=25  Identities=20%  Similarity=0.320  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...++|+|++|+|||||++-++..+
T Consensus       361 G~~vaIvG~SGsGKSTLl~lL~g~~  385 (529)
T TIGR02868       361 GERVAILGPSGSGKSTLLMLLTGLL  385 (529)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4578999999999999999987644

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-37
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	3e-36
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	8e-29
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	3e-21

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score =  141 bits (357), Expect = 1e-37
 Identities = 64/367 (17%), Positives = 122/367 (33%), Gaps = 86/367 (23%)

Query: 6   LGIWGIGGVGKT--AIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLND 63
           + I G+ G GKT  A+      K+  + +   F  N++       + ++ ++LL  +  D
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--D 210

Query: 64  GNMNKFP----NIGLNFQS--KRLTR-------KKVLIVFDDVNHPRQIEFLIGNLDWFA 110
            N         NI L   S    L R       +  L+V  +V + +         + F 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAW-------NAFN 263

Query: 111 SGSRILITARDKQALINCGVNKIYQIKELVHV-------DALKLLNQCAFGRDHPDASYI 163
              +IL+T R KQ + +           L H        +   LL +        D    
Sbjct: 264 LSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL------DCRPQ 316

Query: 164 ELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDD 223
           +L  E +      P  L I+   + R     W+N     + V   ++  +++ S + L+ 
Sbjct: 317 DLPREVLT---TNPRRLSIIAESI-RDGLATWDN----WKHVNCDKLTTIIESSLNVLEP 368

Query: 224 KE-KNIFLDIACFLVGEDRDIVTKYL---------NACEFFATSGIEVLVDKSLITI-SE 272
            E + +F  ++ F       I T  L         +            L   SL+    +
Sbjct: 369 AEYRKMFDRLSVFP--PSAHIPTILLSLIWFDVIKSDVMVVVNK----LHKYSLVEKQPK 422

Query: 273 YNKIRMHDLMRNMGREIVRQESINDPSKRSRLWHHKEI---YEV--------LTENMVSN 321
            + I +  +   +     + +  N+ +       H+ I   Y +        L    +  
Sbjct: 423 ESTISIPSIYLEL-----KVKLENEYA------LHRSIVDHYNIPKTFDSDDLIPPYLDQ 471

Query: 322 YDFASYF 328
           Y F S+ 
Sbjct: 472 Y-FYSHI 477

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* Length = 549

 Score =  136 bits (343), Expect = 3e-36
 Identities = 50/335 (14%), Positives = 111/335 (33%), Gaps = 51/335 (15%)

Query: 6   LGIWGIGGVGKTAIAGAFFSK----ISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL 61
           L + G  G GK+ IA    SK    I   ++   +  +   A +     DL  ++L  L 
Sbjct: 155 LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPK--STFDLFTDILLMLK 212

Query: 62  NDGNMNKFPNIGLN--------FQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGS 113
           ++ ++  FP++             +  + R   L VFDDV     I +            
Sbjct: 213 SEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRW------AQELRL 266

Query: 114 RILITARDKQ-ALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKY 172
           R L+T RD + +       +  ++  L   +    L          +    ++ ++ I+ 
Sbjct: 267 RCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGE-KEEDVLNKTIEL 325

Query: 173 AQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQ-----------EVLKISYDGL 221
           + G P  L +  +    K  E      +KLE    + ++             L+   + L
Sbjct: 326 SSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCVEVL 385

Query: 222 DDKEKNIFLDIACFLVGEDRDIVTKYLNAC-------------EFFATSGIEVLVDKSLI 268
            D++++              DI  K  +               +      ++ L  +  +
Sbjct: 386 SDEDRSALAFAVVMP--PGVDIPVKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGAL 443

Query: 269 TISEYNKI---RMHDLMRNMGREIVRQESINDPSK 300
              +   +   ++  ++    + +V  ++I +   
Sbjct: 444 LSGKRMPVLTFKIDHIIHMFLKHVVDAQTIANGIS 478

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591

 Score =  115 bits (290), Expect = 8e-29
 Identities = 67/324 (20%), Positives = 121/324 (37%), Gaps = 43/324 (13%)

Query: 6   LGIWGIGGVGKTAIAGAFF---SKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN 62
           + I G+ G GK+ +A       S +   F G     +V + +++G L  L + L + L  
Sbjct: 150 VTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMKL-QNLCTRLDQ 208

Query: 63  DGNMNKFPNIGLNFQSKRLTR------KKVLIVFDDVNHPRQIEFLIGNLDWFASGSRIL 116
           D + ++   + +     RL         + L++ DDV            L  F S  +IL
Sbjct: 209 DESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDSWV-------LKAFDSQCQIL 261

Query: 117 ITARDKQALINCGVNK--IYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ 174
           +T RDK    +    K  +     L     L++L+         D    E  H  IK  +
Sbjct: 262 LTTRDKSVTDSVMGPKYVVPVESSLGKEKGLEILSLFVN-MKKAD--LPEQAHSIIKECK 318

Query: 175 GVPIALKILGRFLFRKRKEVWENAISKLE-----------MVPQMEIQEVLKISYDGLDD 223
           G P+ + ++G  L       WE  + +L+                 + E + IS + L +
Sbjct: 319 GSPLVVSLIGALLRDFPNR-WEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRE 377

Query: 224 KEKNIFLDIACFLVGEDRDIVTKYL----NACEFFATSGIEVLVDKSLITISEYNKI--- 276
             K+ + D++     +D  + TK L    +         ++  V+KSL+      K    
Sbjct: 378 DIKDYYTDLSILQ--KDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRY 435

Query: 277 RMHDLMRNMGREIVRQESINDPSK 300
            +HDL  +   E    +  +   K
Sbjct: 436 YLHDLQVDFLTEKNCSQLQDLHKK 459

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 93.7 bits (233), Expect = 3e-21
 Identities = 59/311 (18%), Positives = 116/311 (37%), Gaps = 42/311 (13%)

Query: 2   DTCKL-GIWGIGGVGKTAIAGAF---FSKISRRFEGSYFAHNVREAEETGKLADLRKELL 57
                  I+G+ G GK+ +A       S +   F G     ++ + +++G L  L+  L 
Sbjct: 145 GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGLLMKLQ-NLC 203

Query: 58  STLLNDGNMNKFPNIGLNFQSKRLT------RKKVLIVFDDVNHPRQIEFLIGNLDWFAS 111
             L  + + ++   + +     RL         + L++ DDV  P  ++        F +
Sbjct: 204 MRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDPWVLKA-------FDN 256

Query: 112 GSRILITARDKQALINC--GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEA 169
             +IL+T RDK    +     + +     L     L++L+      +          H  
Sbjct: 257 QCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFV---NMKKEDLPAEAHSI 313

Query: 170 IKYAQGVPIALKILG----------RFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYD 219
           IK  +G P+ + ++G           +  R+ +      I K        + E + IS +
Sbjct: 314 IKECKGSPLVVSLIGALLRDFPNRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVE 373

Query: 220 GLDDKEKNIFLDIACFLVGEDRDIVTKYLNACEFFATSGI----EVLVDKSLITISEYNK 275
            L +  K+ + D++     +D  + TK L       T  +    +  V+KSL+  +   K
Sbjct: 374 MLREDIKDYYTDLSILQ--KDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGK 431

Query: 276 ---IRMHDLMR 283
                +HDL  
Sbjct: 432 SFCYYLHDLQV 442

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	100.0
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	100.0
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	99.82
2fna_A	357	Conserved hypothetical protein; structural genomic	99.81
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	99.73
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	99.64
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	99.61
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	99.61
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	99.51
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	99.36
2chg_A	226	Replication factor C small subunit; DNA-binding pr	99.28
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	99.14
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	99.09
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	99.06
2chq_A	319	Replication factor C small subunit; DNA-binding pr	99.02
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	98.94
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	98.92
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	98.9
3bos_A	242	Putative DNA replication factor; P-loop containing	98.9
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	98.89
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	98.78
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	98.77
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	98.77
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	98.76
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	98.75
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	98.75
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	98.75
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	98.74
3pvs_A	447	Replication-associated recombination protein A; ma	98.7
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	98.68
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	98.68
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	98.65
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	98.65
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	98.62
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	98.59
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	98.58
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	98.58
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.58
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	98.56
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	98.53
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	98.5
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	98.49
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	98.46
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	98.42
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	98.41
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	98.36
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	98.35
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	98.34
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.34
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	98.31
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	98.29
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	98.29
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	98.27
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	98.26
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	98.25
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	98.23
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.21
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	98.21
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	98.19
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	98.04
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	98.03
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	97.99
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	97.99
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.99
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	97.97
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	97.93
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.93
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.92
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.9
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.9
2qgz_A	308	Helicase loader, putative primosome component; str	97.9
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	97.89
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	97.88
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.87
1jr3_D	343	DNA polymerase III, delta subunit; processivity, p	97.83
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.8
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.78
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	97.75
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.66
3co5_A	143	Putative two-component system transcriptional RES	97.6
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	97.6
1g5t_A	196	COB(I)alamin adenosyltransferase; P-loop protein,	97.57
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	97.57
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	97.53
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	97.53
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.5
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	97.47
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	97.46
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.45
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	97.42
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	97.41
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	97.4
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.36
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	97.35
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.26
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.23
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.21
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	97.2
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.19
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.18
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.15
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.14
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.13
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.12
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.11
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.1
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.09
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.08
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.07
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.07
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.05
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.05
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	97.04
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.04
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.0
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	97.0
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.0
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.99
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.99
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	96.98
3e1s_A	574	Exodeoxyribonuclease V, subunit RECD; alpha and be	96.97
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.95
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.95
1via_A	175	Shikimate kinase; structural genomics, transferase	96.95
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.94
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	96.94
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	96.94
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.93
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.93
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.92
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.92
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.91
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.91
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.91
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.91
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.91
3io5_A	333	Recombination and repair protein; storage dimer, i	96.91
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.9
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.88
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.88
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.87
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.87
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.86
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.86
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.84
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.84
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.83
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.82
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	96.82
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.82
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.81
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.81
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.79
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.79
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.78
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.77
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.77
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.77
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.76
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.76
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.75
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.75
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.74
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.74
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.74
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.73
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.72
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.72
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.71
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.7
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.7
3fwy_A	314	Light-independent protochlorophyllide reductase I	96.69
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.69
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.68
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.68
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.68
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.68
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.67
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.66
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.66
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.65
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.62
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.61
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.61
1u94_A	356	RECA protein, recombinase A; homologous recombinat	96.61
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.6
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.6
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.6
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.59
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.59
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.59
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.59
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.59
2j9r_A	214	Thymidine kinase; TK1, DNK, lasso, transferase, AT	96.58
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.56
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.55
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	96.55
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.54
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.54
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.52
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.51
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.51
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.5
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.5
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	96.5
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	96.5
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.49
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.49
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	96.49
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.48
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.48
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.48
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.48
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.48
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.47
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	96.46
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.45
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.44
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.43
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.41
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.39
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.39
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.39
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	96.39
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.39
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.38
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.38
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.38
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.38
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.38
1xp8_A	366	RECA protein, recombinase A; recombination, radior	96.37
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.36
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.36
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	96.34
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.33
2og2_A	359	Putative signal recognition particle receptor; nuc	96.31
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.31
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.31
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	96.29
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	96.28
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.26
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.25
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.25
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.25
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.25
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.24
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.24
2xxa_A	433	Signal recognition particle protein; protein trans	96.23
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.21
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.21
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.2
1w36_D	608	RECD, exodeoxyribonuclease V alpha chain; recombin	96.19
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.19
2ck3_D	482	ATP synthase subunit beta\, mitochondrial; hydrola	96.19
3end_A	307	Light-independent protochlorophyllide reductase ir	96.18
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.17
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.17
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.11
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	96.11
2r44_A	331	Uncharacterized protein; putative ATPase, structur	96.11
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	96.09
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.08
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	96.07
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	96.05
3iqw_A	334	Tail-anchored protein targeting factor GET3; ATPas	96.04
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.02
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	95.96
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.95
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.94
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.93
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.92
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.91
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.91
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.9
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.89
1fx0_B	498	ATP synthase beta chain; latent ATPase, thermal st	95.89
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	95.88
3zq6_A	324	Putative arsenical pump-driving ATPase; tail-ancho	95.88
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	95.87
3io3_A	348	DEHA2D07832P; chaperone, membrane traffic, ATPase;	95.86
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.85
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.85
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.85
2afh_E	289	Nitrogenase iron protein 1; nitrogen fixation, iro	95.83
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	95.83
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.81
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	95.8
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.79
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.78
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.77
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	95.74
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.73
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	95.73
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.72
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	95.71
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.7
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	95.69
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	95.69
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	95.68
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.66
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.66
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	95.65
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.65
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	95.63
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	95.63
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	95.6
3ug7_A	349	Arsenical pump-driving ATPase; tail-anchored, memb	95.58
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	95.55
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	95.55
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	95.54
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.53
3vkw_A	446	Replicase large subunit; alpha/beta domain, helica	95.53
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.52
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	95.52
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	95.51
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	95.5
1b0u_A	262	Histidine permease; ABC transporter, transport pro	95.49
2ged_A	193	SR-beta, signal recognition particle receptor beta	95.49
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.48
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	95.47
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	95.47
1ji0_A	240	ABC transporter; ATP binding protein, structural g	95.47
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	95.46
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	95.45
1g6h_A	257	High-affinity branched-chain amino acid transport	95.44
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	95.44
1sgw_A	214	Putative ABC transporter; structural genomics, P p	95.44
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	95.44
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.43
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.43
1nrj_B	218	SR-beta, signal recognition particle receptor beta	95.42
2woo_A	329	ATPase GET3; tail-anchored, membrane protein, targ	95.42
1xx6_A	191	Thymidine kinase; NESG, northeast structural genom	95.42
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	95.41
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	95.38
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	95.36
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	95.35
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.33
2ghi_A	260	Transport protein; multidrug resistance protein, M	95.33
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	95.33
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	95.33
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	95.32
1ihu_A	589	Arsenical pump-driving ATPase; aluminum fluoride,	95.3
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	95.29
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	95.29
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	95.28
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.26
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.25
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.25
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	95.24
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	95.22
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.22
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	95.22
2gk6_A	624	Regulator of nonsense transcripts 1; UPF1, helicas	95.21
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	95.21
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.2
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	95.2
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	95.19
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	95.19
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	95.18
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	95.18
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	95.16
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	95.15
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	95.15
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	95.15
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	95.14
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	95.14
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.12
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	95.11
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	95.1
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	95.1
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	95.09
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.09
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	95.09
2woj_A	354	ATPase GET3; tail-anchored, membrane protein, targ	95.06
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	95.05
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.04
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	95.04
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.04
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.03
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.03
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	95.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	95.0
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	94.97
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	94.96
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	94.96
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	94.95
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	94.94
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	94.94
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	94.94
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.93
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	94.92
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	94.92
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	94.91
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	94.9
1byi_A	224	Dethiobiotin synthase; biotin synthesis, cyclo-lig	94.89
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	94.88
3fkq_A	373	NTRC-like two-domain protein; RER070207001320, str	94.87
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	94.87
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	94.86
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	94.86
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	94.86
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	94.85
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	94.85
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	94.84
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	94.83
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.83
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.82
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	94.81
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	94.81
2fh5_B	214	SR-beta, signal recognition particle receptor beta	94.81
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	94.81
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	94.79
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	94.79
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	94.78
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	94.78
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	94.78
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	94.77
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	94.77
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	94.75
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	94.74
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.73
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	94.73
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	94.72
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	94.71
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	94.71
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.7
3cwq_A	209	Para family chromosome partitioning protein; alpha	94.7
3igf_A	374	ALL4481 protein; two-domained protein consisting o	94.7
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	94.7
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	94.69
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	94.69
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	94.67
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	94.66
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	94.65
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	94.65
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	94.64
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	94.64
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	94.64
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	94.64
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.63
2orv_A	234	Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2	94.58
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	94.56
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	94.56
3dzd_A	368	Transcriptional regulator (NTRC family); sigma43 a	94.55
1ny5_A	387	Transcriptional regulator (NTRC family); AAA+ ATPa	94.53
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	94.53
3cio_A	299	ETK, tyrosine-protein kinase ETK; WZC, escherichia	94.52
3bfv_A	271	CAPA1, CAPB2, membrane protein CAPA1, protein tyro	94.52
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	94.51
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	94.51
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	94.5
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	94.5
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	94.48
3ice_A	422	Transcription termination factor RHO; transcriptio	94.48
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	94.48
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	94.47
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	94.46
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	94.46
3vr4_D	465	V-type sodium ATPase subunit D; V-ATPase, rotary m	94.45
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	94.45
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	94.42
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	94.4
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	94.39
2wjy_A	800	Regulator of nonsense transcripts 1; nonsense medi	94.38
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	94.36
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	94.36
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	94.36
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	94.35
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	94.33
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	94.33
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	94.33
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	94.32
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	94.32
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	94.31
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	94.3
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	94.3
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	94.3
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	94.29
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	94.29
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.29
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	94.28
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	94.25
4b3f_X	646	DNA-binding protein smubp-2; hydrolase, helicase;	94.25
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.21
2oze_A	298	ORF delta'; para, walker type atpases, DNA segrega	94.21
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	94.2
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	94.2
2r9v_A	515	ATP synthase subunit alpha; TM1612, structural gen	94.17
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	94.17
3llu_A	196	RAS-related GTP-binding protein C; structural geno	94.16
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.15
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	94.12
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	94.1
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.1
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	94.09
3cmw_A	1706	Protein RECA, recombinase A; homologous recombinat	94.04
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	94.04

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=100.00  E-value=3.2e-39  Score=303.63  Aligned_cols=278  Identities=17%  Similarity=0.190  Sum_probs=204.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH----HHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCC---CCCCCCc
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFS----KISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGN---MNKFPNI   72 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~---~~~~~~~   72 (329)
                      ++++|+|+|+||+||||||+++++    .+..+|+.++|++    ++..  ..+..++..++.++.....   .+.....
T Consensus       151 ~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~----vs~~~~~~~~~~~~~il~~l~~~~~~~~~~~~~~~  226 (549)
T 2a5y_B          151 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHV  226 (549)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTC
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEE----ECCCCCCCHHHHHHHHHHHHhcCcccccccccccc
Confidence            468999999999999999999996    6788899999997    4333  3678899999999876532   1111111


Q ss_pred             ----chHHHHhhhcCc-eEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcC-CCeEEEecCCChhhhHH
Q 020206           73 ----GLNFQSKRLTRK-KVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCG-VNKIYQIKELVHVDALK  146 (329)
Q Consensus        73 ----~~~~l~~~~~~~-~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~-~~~~~~l~~l~~~e~~~  146 (329)
                          ....+.+.+.++ ++||||||||+.+.+ .+..     .+|++||||||+..+..... ....+++++|+.+++++
T Consensus       227 ~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~-~~~~-----~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~  300 (549)
T 2a5y_B          227 TSVVLKRMICNALIDRPNTLFVFDDVVQEETI-RWAQ-----ELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYD  300 (549)
T ss_dssp             CHHHHHHHHHHHHTTSTTEEEEEEEECCHHHH-HHHH-----HTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHcCCCcEEEEEECCCCchhh-cccc-----cCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHH
Confidence                467788888886 999999999998765 3322     26999999999998877654 34679999999999999


Q ss_pred             HHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHH-hhccCCh-----------hhHHHHH
Q 020206          147 LLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAIS-KLEMVPQ-----------MEIQEVL  214 (329)
Q Consensus       147 ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~-~l~~~~~-----------~~~~~~l  214 (329)
                      ||.+.++.... .+...+.+.+|+++|+|+||||+.+|+.++... +.|...+. .+.....           ..+...+
T Consensus       301 Lf~~~a~~~~~-~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~l  378 (549)
T 2a5y_B          301 FLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMAL  378 (549)
T ss_dssp             HHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHH
T ss_pred             HHHHHhcCCCC-chhHHHHHHHHHHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcccHHHHHHHHhcccccccHHH
Confidence            99998755432 356778899999999999999999999997763 33322222 1211112           2344455


Q ss_pred             HhhhcCCChhhHhHHHhhhcccCccChhHHHHHHHhC--Cc-----------chhhhHHHHhhccceeeecC---Cceec
Q 020206          215 KISYDGLDDKEKNIFLDIACFLVGEDRDIVTKYLNAC--EF-----------FATSGIEVLVDKSLITISEY---NKIRM  278 (329)
Q Consensus       215 ~~~~~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~~~~--~~-----------~~~~~l~~L~~~~Ll~~~~~---~~~~~  278 (329)
                      +.+|..|++++|++|.++|+||.+++.+  ..+|.+.  ++           +...++++|++++|++....   ++|+|
T Consensus       379 k~~f~~Ls~~er~l~~~ls~fp~~~~i~--i~~w~a~~~G~i~~~~~~~~~~~~~~~l~~L~~rsLl~~~~~~~~~~~~m  456 (549)
T 2a5y_B          379 QRCVEVLSDEDRSALAFAVVMPPGVDIP--VKLWSCVIPVDICSNEEEQLDDEVADRLKRLSKRGALLSGKRMPVLTFKI  456 (549)
T ss_dssp             HHHHHTSCHHHHHHTTGGGSSCTTCCEE--HHHHHHHSCC-------CCCTHHHHHHHHHTTTBSSCSEEECSSSCEEEC
T ss_pred             HHHHhccchhhhhHhhheeeeCCCCeee--eeeeeeeccceeccCCCCCCHHHHHHHHHHHHHcCCeeEecCCCceEEEe
Confidence            5555566666666666999999887766  4566665  22           22347999999999986543   46999


Q ss_pred             cHHHHHHHHHHHHhc
Q 020206          279 HDLMRNMGREIVRQE  293 (329)
Q Consensus       279 H~lir~~~~~~~~~~  293 (329)
                      |+++|+||++++.++
T Consensus       457 Hdlv~~~a~~~~~~~  471 (549)
T 2a5y_B          457 DHIIHMFLKHVVDAQ  471 (549)
T ss_dssp             CHHHHHHHHTTSCTH
T ss_pred             ChHHHHHHHHHHHHH
Confidence            999999999766544

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.8e-35  Score=303.25  Aligned_cols=279  Identities=19%  Similarity=0.286  Sum_probs=214.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH---HhcCCCceE-EEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCC----cc
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK---ISRRFEGSY-FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPN----IG   73 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~----~~   73 (329)
                      ++++|+|+|+||+||||||++++++   ...+|+..+ |+. ..... .......+..++..+...........    ..
T Consensus       146 ~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~-~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  223 (1249)
T 3sfz_A          146 EPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS-IGKQD-KSGLLMKLQNLCMRLDQEESFSQRLPLNIEEA  223 (1249)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEE-CCSCC-HHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEE-ECCcC-chHHHHHHHHHHHHhhhhcccccCCCCCHHHH
Confidence            5789999999999999999999875   355576666 555 22211 12233445566666655433212211    15


Q ss_pred             hHHHHhhhcCc--eEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHh-cCCCeEEEecC-CChhhhHHHHh
Q 020206           74 LNFQSKRLTRK--KVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALIN-CGVNKIYQIKE-LVHVDALKLLN  149 (329)
Q Consensus        74 ~~~l~~~~~~~--~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~-~~~~~~~~l~~-l~~~e~~~ll~  149 (329)
                      ...+...+.++  ++||||||+|+...+..+       .++++||+|||++.+... ......+.+++ |+++|+.+||.
T Consensus       224 ~~~l~~~l~~~~~~~LlvlDd~~~~~~~~~~-------~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~  296 (1249)
T 3sfz_A          224 KDRLRVLMLRKHPRSLLILDDVWDPWVLKAF-------DNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILS  296 (1249)
T ss_dssp             HHHHHHHTSSSSCSCEEEEESCCCHHHHTTT-------CSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCEEEEEecCCCHHHHHhh-------cCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHH
Confidence            55666666666  999999999998766654       578999999999977643 34556788986 99999999999


Q ss_pred             hhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCC-----------hhhHHHHHHhhh
Q 020206          150 QCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVP-----------QMEIQEVLKISY  218 (329)
Q Consensus       150 ~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~-----------~~~~~~~l~~~~  218 (329)
                      ..+....   +..++.+.+|+++|+|+||||+++|+.|+..+ ..|..+++.+....           ...+..++..+|
T Consensus       297 ~~~~~~~---~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~-~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~  372 (1249)
T 3sfz_A          297 LFVNMKK---EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP-NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISV  372 (1249)
T ss_dssp             HHHTSCS---TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS-SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHH
T ss_pred             HhhCCCh---hhCcHHHHHHHHHhCCCHHHHHHHHHHhhcCh-hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHH
Confidence            8773322   22335589999999999999999999998865 46888877764322           246899999999


Q ss_pred             cCCChhhHhHHHhhhcccCc--cChhHHHHHHHhCCcchhhhHHHHhhccceeeecCCc---eeccHHHHHHHHHHHHhc
Q 020206          219 DGLDDKEKNIFLDIACFLVG--EDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNK---IRMHDLMRNMGREIVRQE  293 (329)
Q Consensus       219 ~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~---~~~H~lir~~~~~~~~~~  293 (329)
                      +.|++++|+||.++|+||.+  ++.+.+..+|..++..+...|++|++++|++...++.   |+||+++|+|+++++.++
T Consensus       373 ~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~  452 (1249)
T 3sfz_A          373 EMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLETEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQ  452 (1249)
T ss_dssp             HTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGG
T ss_pred             HhCCHHHHHHHHHhCccCCCCeeCHHHHHHHhCCCHHHHHHHHHHHHhccceEEecCCCceEEEecHHHHHHHHhhhhHH
Confidence            99999999999999999976  6888999999888888889999999999999877665   999999999999986654

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*

Probab=100.00  E-value=1.3e-34  Score=278.86  Aligned_cols=256  Identities=15%  Similarity=0.133  Sum_probs=191.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH--HHhcCCCc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCC--CCCCC------
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFS--KISRRFEG-SYFAHNVREAEETGKLADLRKELLSTLLNDGN--MNKFP------   70 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~------   70 (329)
                      ++++|+|+||||+||||||+++++  +++.+|+. ++|++    ++.......+...++..+.....  .....      
T Consensus       149 ~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVs----Vs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip  224 (1221)
T 1vt4_I          149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK  224 (1221)
T ss_dssp             SSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEE----CCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHH
T ss_pred             CCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEE----eCCCCCHHHHHHHHHHHHhhcCcccccccccccCCC
Confidence            368999999999999999999997  46788987 67777    44445566777766665432210  00100      


Q ss_pred             ---CcchHHHHhhh---cCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEec------C
Q 020206           71 ---NIGLNFQSKRL---TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQIK------E  138 (329)
Q Consensus        71 ---~~~~~~l~~~~---~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l~------~  138 (329)
                         +...+.+.+.+   .++++||||||+|+.+.++.+       .++++||||||+..+.........+.++      +
T Consensus       225 ~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~eqLe~f-------~pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~  297 (1221)
T 1vt4_I          225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAF-------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMT  297 (1221)
T ss_dssp             HHHHHHHHHHHHHHHHSTTSSCEEEEESCCCHHHHHHH-------HSSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSC
T ss_pred             CCHHHHHHHHHHHHHhhcCCCEEEEEeCcChHHHHHhh-------CCCeEEEEeccChHHHHhcCCCeEEEecCccccCC
Confidence               01234455443   679999999999998888775       2689999999999876433222235555      8


Q ss_pred             CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCC--CHHHHHHHHHhhccCChhhHHHHHHh
Q 020206          139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK--RKEVWENAISKLEMVPQMEIQEVLKI  216 (329)
Q Consensus       139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~--~~~~~~~~~~~l~~~~~~~~~~~l~~  216 (329)
                      |+.+|+++||.+.. +... .    +...   +.|+|+||||+++|+.|+..  ....|...       ....+..+++.
T Consensus       298 LS~eEA~eLF~~~~-g~~~-e----eL~~---eICgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~~~I~aaLel  361 (1221)
T 1vt4_I          298 LTPDEVKSLLLKYL-DCRP-Q----DLPR---EVLTTNPRRLSIIAESIRDGLATWDNWKHV-------NCDKLTTIIES  361 (1221)
T ss_dssp             CCHHHHHHHHHHHH-CCCT-T----THHH---HHCCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHc-CCCH-H----HHHH---HHhCCCHHHHHHHHHHHhCCCCCHHHHhcC-------ChhHHHHHHHH
Confidence            99999999999885 3221 1    1233   34999999999999999886  56667542       35679999999


Q ss_pred             hhcCCChhh-HhHHHhhhcccCc--cChhHHHHHHHhCC-cchhhhHHHHhhccceeee-cCCceeccHHHHH
Q 020206          217 SYDGLDDKE-KNIFLDIACFLVG--EDRDIVTKYLNACE-FFATSGIEVLVDKSLITIS-EYNKIRMHDLMRN  284 (329)
Q Consensus       217 ~~~~L~~~~-~~~l~~ls~~~~~--~~~~~l~~~~~~~~-~~~~~~l~~L~~~~Ll~~~-~~~~~~~H~lir~  284 (329)
                      ||+.|+++. |+||+++|+||.+  ++.+.+..+|.+++ .++...|++|.++||++.. +.++|+||+|+++
T Consensus       362 SYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeGeedAe~~L~eLvdRSLLq~d~~~~rYrMHDLllE  434 (1221)
T 1vt4_I          362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE  434 (1221)
T ss_dssp             HHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSCSHHHHHHHHHHHTSSSSSBCSSSSEEBCCCHHHH
T ss_pred             HHHhCCHHHHHHHHHHHhCCCCCCCCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCEEEeCCCCEEEehHHHHH
Confidence            999999999 9999999999976  56777889998763 3577899999999999975 3568999999988

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=100.00  E-value=5.3e-34  Score=271.25  Aligned_cols=271  Identities=20%  Similarity=0.261  Sum_probs=199.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH---hcCCC-ceEEEeccchhhhcCChHHHHHH---HHHHHhcCCCCC--CCC--
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI---SRRFE-GSYFAHNVREAEETGKLADLRKE---LLSTLLNDGNMN--KFP--   70 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---i~~~~~~~~~~~--~~~--   70 (329)
                      +.++|+|+|+||+||||||.+++++.   ...|+ .++|+.. ...    ....+...   ++..+.......  ...  
T Consensus       146 ~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~-~~~----~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~  220 (591)
T 1z6t_A          146 EPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSV-GKQ----DKSGLLMKLQNLCTRLDQDESFSQRLPLNI  220 (591)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEE-ESC----CHHHHHHHHHHHHHHHCSSCCSCSSCCCSH
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEEC-CCC----chHHHHHHHHHHHHHhccccccccCCCCCH
Confidence            47899999999999999999998753   66785 5667662 221    22233333   333333211110  111  


Q ss_pred             CcchHHHHhhhcC--ceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCCCeEEEe---cCCChhhhH
Q 020206           71 NIGLNFQSKRLTR--KKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVNKIYQI---KELVHVDAL  145 (329)
Q Consensus        71 ~~~~~~l~~~~~~--~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~~~~~l---~~l~~~e~~  145 (329)
                      ......+...+.+  +++||||||+|+...++.+       +++++||+|||+..+..... ...+.+   ++|+.+|+.
T Consensus       221 ~~~~~~l~~~l~~~~~~~LLVLDdv~~~~~l~~l-------~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~  292 (591)
T 1z6t_A          221 EEAKDRLRILMLRKHPRSLLILDDVWDSWVLKAF-------DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGL  292 (591)
T ss_dssp             HHHHHHHHHHHHHTCTTCEEEEEEECCHHHHHTT-------CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHH
T ss_pred             HHHHHHHHHHHccCCCCeEEEEeCCCCHHHHHHh-------cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHH
Confidence            1144455555544  6899999999987765543       56899999999987665433 334555   589999999


Q ss_pred             HHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccC-----------ChhhHHHHH
Q 020206          146 KLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMV-----------PQMEIQEVL  214 (329)
Q Consensus       146 ~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~-----------~~~~~~~~l  214 (329)
                      ++|....+...   ...++.+..|++.|+|+|+||+++|+.++..+ ..|..+++.+...           ....+..++
T Consensus       293 ~L~~~~~~~~~---~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~-~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l  368 (591)
T 1z6t_A          293 EILSLFVNMKK---ADLPEQAHSIIKECKGSPLVVSLIGALLRDFP-NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAM  368 (591)
T ss_dssp             HHHHHHHTSCG---GGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST-TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHH
T ss_pred             HHHHHHhCCCc---ccccHHHHHHHHHhCCCcHHHHHHHHHHhcCc-hhHHHHHHHHHHhHHHHhhhccccchHHHHHHH
Confidence            99998874321   12234588999999999999999999998764 3677777766432           135789999


Q ss_pred             HhhhcCCChhhHhHHHhhhcccCc--cChhHHHHHHHhCCcchhhhHHHHhhccceeeecCC---ceeccHHHHHHHHHH
Q 020206          215 KISYDGLDDKEKNIFLDIACFLVG--EDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYN---KIRMHDLMRNMGREI  289 (329)
Q Consensus       215 ~~~~~~L~~~~~~~l~~ls~~~~~--~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~---~~~~H~lir~~~~~~  289 (329)
                      ..+|+.|+++.|.+|..+|+||.+  ++.+.+..+|..+.......|+.|.++||++...++   +|+||+++|+|++++
T Consensus       369 ~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~  448 (591)
T 1z6t_A          369 SISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDMETEEVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEK  448 (591)
T ss_dssp             HHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHccccCCCCccCHHHHHHHhccCHHHHHHHHHHHHhCcCeEEecCCCccEEEEcHHHHHHHHhh
Confidence            999999999999999999999875  777888899987666778899999999999865433   699999999999988

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=99.82  E-value=9e-19  Score=155.40  Aligned_cols=266  Identities=16%  Similarity=0.106  Sum_probs=158.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhh---hcCChHHHHHHHHHHHhc----------------CC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE---ETGKLADLRKELLSTLLN----------------DG   64 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~~~~----------------~~   64 (329)
                      +++.|+|++|+|||+|++++++..    + .+|+.. ....   ...+...++..+...+..                ..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~----~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~  105 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNER----P-GILIDC-RELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLT  105 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHS----S-EEEEEH-HHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGT
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHc----C-cEEEEe-ecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEeccee
Confidence            689999999999999999998874    1 555542 1111   112455555555543321                00


Q ss_pred             CCCCCCCc--chHHHHhhhcC-ceEEEEEecCCChh--------hHHHHhcccCCCCCCcEEEEEeCchhHHHh------
Q 020206           65 NMNKFPNI--GLNFQSKRLTR-KKVLIVFDDVNHPR--------QIEFLIGNLDWFASGSRILITARDKQALIN------  127 (329)
Q Consensus        65 ~~~~~~~~--~~~~l~~~~~~-~~~LlvlDdv~~~~--------~~~~l~~~l~~~~~~~~ilitsr~~~~~~~------  127 (329)
                      ........  ....+.+.... ++++||+||++...        .+..++..+....++..+|+|++.......      
T Consensus       106 ~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~  185 (350)
T 2qen_A          106 LEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITD  185 (350)
T ss_dssp             SCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHHHCTTEEEEEEESSHHHHHHHHCTTC
T ss_pred             eccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHHhcCCeEEEEECCcHHHHHHHHhhcC
Confidence            00000111  22333333322 38999999996532        222333322211257789999887543211      


Q ss_pred             ----c--CCCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC-CCHHHHHHHHH
Q 020206          128 ----C--GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR-KRKEVWENAIS  200 (329)
Q Consensus       128 ----~--~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~~~~~~~~  200 (329)
                          .  .....+.+.+|+.+|+.+++..........  ..++.+..+++.|+|+|+++..++..+.. .....+   ..
T Consensus       186 ~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~--~~~~~~~~i~~~tgG~P~~l~~~~~~~~~~~~~~~~---~~  260 (350)
T 2qen_A          186 YESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLD--VPENEIEEAVELLDGIPGWLVVFGVEYLRNGDFGRA---MK  260 (350)
T ss_dssp             TTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCC--CCHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHHHH---HH
T ss_pred             CCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHhCCCHHHHHHHHHHHhccccHhHH---HH
Confidence                0  123579999999999999998754221111  22456889999999999999998875432 222211   11


Q ss_pred             hhccCChhhHHHHHHhhhcCC---ChhhHhHHHhhhcccCccChhHHHHHHH-----hCCcchhhhHHHHhhccceeeec
Q 020206          201 KLEMVPQMEIQEVLKISYDGL---DDKEKNIFLDIACFLVGEDRDIVTKYLN-----ACEFFATSGIEVLVDKSLITISE  272 (329)
Q Consensus       201 ~l~~~~~~~~~~~l~~~~~~L---~~~~~~~l~~ls~~~~~~~~~~l~~~~~-----~~~~~~~~~l~~L~~~~Ll~~~~  272 (329)
                      .+    .+.+...+...+.++   ++..+.++..+|+  +..+...+...+.     .+.......++.|.+.+||... 
T Consensus       261 ~~----~~~~~~~~~~~l~~l~~~~~~~~~~l~~la~--g~~~~~~l~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~-  333 (350)
T 2qen_A          261 RT----LEVAKGLIMGELEELRRRSPRYVDILRAIAL--GYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEE-  333 (350)
T ss_dssp             HH----HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHT--TCCSHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEE-
T ss_pred             HH----HHHHHHHHHHHHHHHHhCChhHHHHHHHHHh--CCCCHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCEEec-
Confidence            11    111222233333444   7889999999988  3466677766652     2222345679999999999876 


Q ss_pred             CCcee-ccHHHHHHHH
Q 020206          273 YNKIR-MHDLMRNMGR  287 (329)
Q Consensus       273 ~~~~~-~H~lir~~~~  287 (329)
                      ++.|+ .||++++|.+
T Consensus       334 ~~~y~~~~p~~~~~~~  349 (350)
T 2qen_A          334 DNTYKIADPVVATVLR  349 (350)
T ss_dssp             TTEEEESSHHHHHHHT
T ss_pred             CCEEEEecHHHHHHHc
Confidence            46676 4999999875

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=99.81  E-value=2.3e-18  Score=153.11  Aligned_cols=266  Identities=13%  Similarity=0.043  Sum_probs=153.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhh--hcCChHHHHHHHHHHHhc-------------CCC---
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAE--ETGKLADLRKELLSTLLN-------------DGN---   65 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~i~~~~~~-------------~~~---   65 (329)
                      +++.|+|++|+|||+|++++++....   ..+|+.. ....  ...+...++..+...+..             ...   
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~  106 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNL---PYIYLDL-RKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIV  106 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTC---CEEEEEG-GGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEE
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCC---CEEEEEc-hhhccccCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEE
Confidence            58999999999999999999988653   2456552 2110  012233444443333210             000   


Q ss_pred             CCC----------CCCc---chHHHHhhhcCceEEEEEecCCCh-----hhHHHHhcccCCCCCCcEEEEEeCchhHHHh
Q 020206           66 MNK----------FPNI---GLNFQSKRLTRKKVLIVFDDVNHP-----RQIEFLIGNLDWFASGSRILITARDKQALIN  127 (329)
Q Consensus        66 ~~~----------~~~~---~~~~l~~~~~~~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~  127 (329)
                      .+.          ....   ....+.+... ++++|||||++..     ..+..++..+....++..+|+|++.......
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~  185 (357)
T 2fna_A          107 IMGNEIKFNWNRKDRLSFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYD  185 (357)
T ss_dssp             ECSSSEEEC-----CCCHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHH
T ss_pred             ecceEEEeccCCcchhhHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHHcCCCeEEEEEcCchHHHHH
Confidence            000          0011   2222222222 4899999999542     2222233322211246789999997643221


Q ss_pred             ----------c--CCCeEEEecCCChhhhHHHHhhhhcC-CCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC-CCHH
Q 020206          128 ----------C--GVNKIYQIKELVHVDALKLLNQCAFG-RDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR-KRKE  193 (329)
Q Consensus       128 ----------~--~~~~~~~l~~l~~~e~~~ll~~~~~~-~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~-~~~~  193 (329)
                                .  .....+.+.+|+.+|+.+++...... ......     ...++..|+|+|+++..++..+.. ....
T Consensus       186 ~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~-----~~~i~~~t~G~P~~l~~~~~~~~~~~~~~  260 (357)
T 2fna_A          186 YLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD-----YEVVYEKIGGIPGWLTYFGFIYLDNKNLD  260 (357)
T ss_dssp             HTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC-----HHHHHHHHCSCHHHHHHHHHHHHHHCCHH
T ss_pred             HHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCc-----HHHHHHHhCCCHHHHHHHHHHHccccchH
Confidence                      1  12368999999999999999875421 112221     378999999999999999877543 2222


Q ss_pred             HHHHHHHhhccCChhhHHHHHHhhh---cCCChhhHhHHHhhhcccCccChhHHHHHH----H--hCCcchhhhHHHHhh
Q 020206          194 VWENAISKLEMVPQMEIQEVLKISY---DGLDDKEKNIFLDIACFLVGEDRDIVTKYL----N--ACEFFATSGIEVLVD  264 (329)
Q Consensus       194 ~~~~~~~~l~~~~~~~~~~~l~~~~---~~L~~~~~~~l~~ls~~~~~~~~~~l~~~~----~--~~~~~~~~~l~~L~~  264 (329)
                      .|.   ..+.......+..-+...+   .++++..+.++..+|+ . . +...+...+    +  .+.......|+.|.+
T Consensus       261 ~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~l~~la~-g-~-~~~~l~~~~~~~~g~~~~~~~~~~~L~~L~~  334 (357)
T 2fna_A          261 FAI---NQTLEYAKKLILKEFENFLHGREIARKRYLNIMRTLSK-C-G-KWSDVKRALELEEGIEISDSEIYNYLTQLTK  334 (357)
T ss_dssp             HHH---HHHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT-C-B-CHHHHHHHHHHHHCSCCCHHHHHHHHHHHHH
T ss_pred             HHH---HHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHc-C-C-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHh
Confidence            221   1110000011111122111   1688899999999998 3 3 666666443    2  122334578999999


Q ss_pred             ccceeeecCCcee-ccHHHHHHH
Q 020206          265 KSLITISEYNKIR-MHDLMRNMG  286 (329)
Q Consensus       265 ~~Ll~~~~~~~~~-~H~lir~~~  286 (329)
                      .+||...+ +.|+ .||+++++.
T Consensus       335 ~gli~~~~-~~y~f~~~~~~~~l  356 (357)
T 2fna_A          335 HSWIIKEG-EKYCPSEPLISLAF  356 (357)
T ss_dssp             TTSEEESS-SCEEESSHHHHHHT
T ss_pred             CCCEEecC-CEEEecCHHHHHhh
Confidence            99998764 6676 599999875

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=99.73  E-value=2.3e-16  Score=143.12  Aligned_cols=270  Identities=13%  Similarity=0.056  Sum_probs=153.8

Q ss_pred             ceEEEE--EcCCCCcHHHHHHHHHHHHhcC-----CC-ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC-Ccc
Q 020206            3 TCKLGI--WGIGGVGKTAIAGAFFSKISRR-----FE-GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP-NIG   73 (329)
Q Consensus         3 ~r~v~I--~G~~GiGKTtLa~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~   73 (329)
                      .+.+.|  +|++|+|||+|++.+++.....     +. .++|+.    +........++..++..++......... ...
T Consensus        50 ~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  125 (412)
T 1w5s_A           50 DVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AFNAPNLYTILSLIVRQTGYPIQVRGAPALDI  125 (412)
T ss_dssp             CEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHH
T ss_pred             CCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE----CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHH
Confidence            457888  9999999999999999876542     12 234444    3344567788888888875432211111 112


Q ss_pred             hHHHHhhhc--CceEEEEEecCCCh--------hhHHHHhcccCCC---C--CCcEEEEEeCchhHH-------Hh--cC
Q 020206           74 LNFQSKRLT--RKKVLIVFDDVNHP--------RQIEFLIGNLDWF---A--SGSRILITARDKQAL-------IN--CG  129 (329)
Q Consensus        74 ~~~l~~~~~--~~~~LlvlDdv~~~--------~~~~~l~~~l~~~---~--~~~~ilitsr~~~~~-------~~--~~  129 (329)
                      ...+.+.+.  +++++|||||++..        +.+..++..+...   .  .+..+|+||+.....       ..  ..
T Consensus       126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~  205 (412)
T 1w5s_A          126 LKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQ  205 (412)
T ss_dssp             HHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTT
T ss_pred             HHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhh
Confidence            333444433  67999999999542        3343333333211   1  344577787654321       11  12


Q ss_pred             CCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhc------CCchHHHHHHhhhcC---------CCHHH
Q 020206          130 VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ------GVPIALKILGRFLFR---------KRKEV  194 (329)
Q Consensus       130 ~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~------g~Plal~~~~~~l~~---------~~~~~  194 (329)
                      ....+.+++++.+++.+++..+...........++.+..+++.++      |+|..+..++.....         -....
T Consensus       206 ~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~  285 (412)
T 1w5s_A          206 IGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDL  285 (412)
T ss_dssp             CSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHH
T ss_pred             cCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHH
Confidence            233499999999999999976542111111233567889999999      999876665543211         11222


Q ss_pred             HHHHHHhhccCChhhHHHHHHhhhcCCChhhHhHHHhhhccc----CccChhHHHH----HH-HhCC------cchhhhH
Q 020206          195 WENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIFLDIACFL----VGEDRDIVTK----YL-NACE------FFATSGI  259 (329)
Q Consensus       195 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~~l~~----~~-~~~~------~~~~~~l  259 (329)
                      +.........      ...+...+..||+..+.++..++.+.    ..++...+..    +. ...+      ......+
T Consensus       286 v~~~~~~~~~------~~~~~~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  359 (412)
T 1w5s_A          286 VRKAVSENEA------ASIQTHELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYL  359 (412)
T ss_dssp             HHHHHHHC------------CCSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHH
T ss_pred             HHHHHHHHhc------cchHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHH
Confidence            2222221110      23455677899999999999888653    2344433222    22 2111      1234679


Q ss_pred             HHHhhccceeeec-----CCceeccHHH
Q 020206          260 EVLVDKSLITISE-----YNKIRMHDLM  282 (329)
Q Consensus       260 ~~L~~~~Ll~~~~-----~~~~~~H~li  282 (329)
                      +.|.+.+||+...     .|+|++|.+.
T Consensus       360 ~~L~~~gli~~~~~~~~~~g~~~~~~l~  387 (412)
T 1w5s_A          360 KHLTSLGLVDAKPSGRGMRGRTTLFRLA  387 (412)
T ss_dssp             HHHHHTTSEEEECC-------CCEEEEC
T ss_pred             HHHHhCCCEEeecccCCCCCceeEEEeC
Confidence            9999999998542     3456555443

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.64  E-value=3.8e-14  Score=127.25  Aligned_cols=254  Identities=15%  Similarity=0.018  Sum_probs=150.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC--------CCceEEEeccchhhhcC-ChHHHHHHHHHHHhcCCCCCCCC--C
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR--------FEGSYFAHNVREAEETG-KLADLRKELLSTLLNDGNMNKFP--N   71 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~--------~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~--~   71 (329)
                      .+.+.|+|++|+|||+||+.+++.....        ....+|+.    ..... ....++..++..+..........  .
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  120 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN----CREVGGTPQAVLSSLAGKLTGFSVPKHGINLG  120 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE----HHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE----CccCCCCHHHHHHHHHHHhcCCCCCCCCCCHH
Confidence            5689999999999999999999876433        22344444    33334 67778888887774432221111  1


Q ss_pred             cchHHHHhhhcCceEEEEEecCCChh------h-HHHHhcccCCCCCCcEEEEEeCchhHH----Hh--cCCCeEEEecC
Q 020206           72 IGLNFQSKRLTRKKVLIVFDDVNHPR------Q-IEFLIGNLDWFASGSRILITARDKQAL----IN--CGVNKIYQIKE  138 (329)
Q Consensus        72 ~~~~~l~~~~~~~~~LlvlDdv~~~~------~-~~~l~~~l~~~~~~~~ilitsr~~~~~----~~--~~~~~~~~l~~  138 (329)
                      .....+.+.+...+.+|||||++...      . +..+...    ..+..+|+||+.....    ..  ......+.+++
T Consensus       121 ~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~----~~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~  196 (384)
T 2qby_B          121 EYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRS----DANISVIMISNDINVRDYMEPRVLSSLGPSVIFKP  196 (384)
T ss_dssp             HHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTS----SSCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECC
T ss_pred             HHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcC----CcceEEEEEECCCchHhhhCHHHHhcCCCeEEECC
Confidence            23455555666665699999995432      2 3333322    2577888888865211    11  12223899999


Q ss_pred             CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhc---CCchHHHHHHhhh---c----CCCHHHHHHHHHhhccCChh
Q 020206          139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ---GVPIALKILGRFL---F----RKRKEVWENAISKLEMVPQM  208 (329)
Q Consensus       139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l---~----~~~~~~~~~~~~~l~~~~~~  208 (329)
                      ++.++..+++...+..........++.++.+++.++   |+|..+..+....   .    .-....+...+...      
T Consensus       197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~------  270 (384)
T 2qby_B          197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY------  270 (384)
T ss_dssp             CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH------
T ss_pred             CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH------
Confidence            999999999998753111111223356788888888   9998443322221   1    12344444444433      


Q ss_pred             hHHHHHHhhhcCCChhhHhHHHhhhc-ccCccChhHHHHHHHhC---C---cchhhhHHHHhhccceeee
Q 020206          209 EIQEVLKISYDGLDDKEKNIFLDIAC-FLVGEDRDIVTKYLNAC---E---FFATSGIEVLVDKSLITIS  271 (329)
Q Consensus       209 ~~~~~l~~~~~~L~~~~~~~l~~ls~-~~~~~~~~~l~~~~~~~---~---~~~~~~l~~L~~~~Ll~~~  271 (329)
                       ....+..++..|++..+.++..++. ..++-.......+...-   .   ......+..|.+.|+++..
T Consensus       271 -~~~~~~~~~~~l~~~~~~~l~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~  339 (384)
T 2qby_B          271 -EQERLIEAVKALPFHYKLALRSLIESEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIR  339 (384)
T ss_dssp             -HHHHHHHHHHSSCHHHHHHHHHHHTCCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             -hcchHHHHHHcCCHHHHHHHHHHHHhcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence             1235667788999999999888876 21010011222333221   1   1234578899999999854

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=99.61  E-value=1.3e-13  Score=123.94  Aligned_cols=278  Identities=12%  Similarity=0.028  Sum_probs=162.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC-CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC-CcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP-NIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~l~~~~   81 (329)
                      +.+.|+|++|+|||+|++.+++...... ...+++.    .........++..++..+.......... ......+...+
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l  120 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN----GFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL  120 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE----TTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe----CccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHH
Confidence            4899999999999999999999876542 3344444    3334456677778777765432211111 11223333332


Q ss_pred             --cCceEEEEEecCCC--hhhHHHHhcccCCCC----CCcEEEEEeCchhHHHhcC-------CCeEEEecCCChhhhHH
Q 020206           82 --TRKKVLIVFDDVNH--PRQIEFLIGNLDWFA----SGSRILITARDKQALINCG-------VNKIYQIKELVHVDALK  146 (329)
Q Consensus        82 --~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~----~~~~ilitsr~~~~~~~~~-------~~~~~~l~~l~~~e~~~  146 (329)
                        .+++.+|+||+++.  ......+...+....    .+..+|++|+.........       ....+.+++++.++..+
T Consensus       121 ~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~  200 (389)
T 1fnn_A          121 RERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFD  200 (389)
T ss_dssp             HHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHH
T ss_pred             hhcCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHH
Confidence              25688999999954  344555554443222    3667787777653222111       12369999999999999


Q ss_pred             HHhhhhcCCCCCCCchHHHHHHHHHHh---------cCCchHHHHHHhhhcC---------CCHHHHHHHHHhhccCChh
Q 020206          147 LLNQCAFGRDHPDASYIELTHEAIKYA---------QGVPIALKILGRFLFR---------KRKEVWENAISKLEMVPQM  208 (329)
Q Consensus       147 ll~~~~~~~~~~~~~~~~~~~~i~~~~---------~g~Plal~~~~~~l~~---------~~~~~~~~~~~~l~~~~~~  208 (329)
                      ++..............++.+..+++.+         .|+|..+..+......         -....+.........    
T Consensus       201 ~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~----  276 (389)
T 1fnn_A          201 ILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLF----  276 (389)
T ss_dssp             HHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSC----
T ss_pred             HHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhh----
Confidence            998876321111234457789999999         7998766655443211         122233332222211    


Q ss_pred             hHHHHHHhhhcCCChhhHhHHHhhhccc---C--ccChhHHHHHHHh-------CC---cchhhhHHHHhhccceeeecC
Q 020206          209 EIQEVLKISYDGLDDKEKNIFLDIACFL---V--GEDRDIVTKYLNA-------CE---FFATSGIEVLVDKSLITISEY  273 (329)
Q Consensus       209 ~~~~~l~~~~~~L~~~~~~~l~~ls~~~---~--~~~~~~l~~~~~~-------~~---~~~~~~l~~L~~~~Ll~~~~~  273 (329)
                         ..+...+.+|++..+.++..++.+.   .  .++...+...+..       ..   ......+..|...|+|.....
T Consensus       277 ---~~~~~~l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~  353 (389)
T 1fnn_A          277 ---GISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQN  353 (389)
T ss_dssp             ---CCCHHHHHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred             ---hhHHHHHHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeee
Confidence               1223446788999898888787543   1  3454444333222       11   123457899999999986443


Q ss_pred             -------Cce-------eccHHHHHHHHHHHHh
Q 020206          274 -------NKI-------RMHDLMRNMGREIVRQ  292 (329)
Q Consensus       274 -------~~~-------~~H~lir~~~~~~~~~  292 (329)
                             |+|       ..|++.+.+...++..
T Consensus       354 ~~~~g~~g~~~~~~l~~~~~~v~~~~~~~~~~~  386 (389)
T 1fnn_A          354 KRGEGVRGRTTLISIGTEPLDTLEAVITKLIKE  386 (389)
T ss_dssp             ---------CEEEECCSSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCceeEEEeCCCHHHHHHHHHHHHHHH
Confidence                   332       2456666655555443

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=99.61  E-value=6.1e-14  Score=125.79  Aligned_cols=258  Identities=15%  Similarity=0.057  Sum_probs=147.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC---CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCC-CcchHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF---EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFP-NIGLNFQS   78 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~l~   78 (329)
                      .+.+.|+|++|+|||+|++.+++.....+   ...+|+.    .........++..++..+.......... ......+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~  120 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN----TRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLV  120 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE----HHHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE----CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH
Confidence            56899999999999999999999876543   2344544    3333455666666666553322110110 11233333


Q ss_pred             hhhc--CceEEEEEecCCC------hhhHHHHhcccCC-CCCCcEEEEEeCchhHHHhc------C-CCeEEEecCCChh
Q 020206           79 KRLT--RKKVLIVFDDVNH------PRQIEFLIGNLDW-FASGSRILITARDKQALINC------G-VNKIYQIKELVHV  142 (329)
Q Consensus        79 ~~~~--~~~~LlvlDdv~~------~~~~~~l~~~l~~-~~~~~~ilitsr~~~~~~~~------~-~~~~~~l~~l~~~  142 (329)
                      +.+.  +++.+||||+++.      ...+..++..+.. ...+..+|++|+........      . ....+.+++++.+
T Consensus       121 ~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~  200 (386)
T 2qby_A          121 KAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAE  200 (386)
T ss_dssp             HHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHH
T ss_pred             HHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHH
Confidence            3333  3489999999943      3334444433321 13355677777765322111      1 2258999999999


Q ss_pred             hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhc---CCchHHHHHHhhhcC---------CCHHHHHHHHHhhccCChhhH
Q 020206          143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQ---GVPIALKILGRFLFR---------KRKEVWENAISKLEMVPQMEI  210 (329)
Q Consensus       143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l~~---------~~~~~~~~~~~~l~~~~~~~~  210 (329)
                      +..+++..............++..+.+++.++   |+|..+..+......         -....+.......       .
T Consensus       201 ~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~-------~  273 (386)
T 2qby_A          201 ELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEI-------E  273 (386)
T ss_dssp             HHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH-------H
T ss_pred             HHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH-------h
Confidence            99999987652111112234566788888888   999955444332211         1233333333222       2


Q ss_pred             HHHHHhhhcCCChhhHhHHHhhhccc----CccChh-------HHHHHHHhCC---cchhhhHHHHhhccceeee
Q 020206          211 QEVLKISYDGLDDKEKNIFLDIACFL----VGEDRD-------IVTKYLNACE---FFATSGIEVLVDKSLITIS  271 (329)
Q Consensus       211 ~~~l~~~~~~L~~~~~~~l~~ls~~~----~~~~~~-------~l~~~~~~~~---~~~~~~l~~L~~~~Ll~~~  271 (329)
                      ...+...+.++++..+.++..++.+.    ..++..       .++..++...   ......++.|.+.|+|+..
T Consensus       274 ~~~~~~~~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~  348 (386)
T 2qby_A          274 RDRVRDIILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKLGVEAVTQRRVSDIINELDMVGILTAK  348 (386)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHTSEEEE
T ss_pred             hchHHHHHHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCEEEE
Confidence            24566778899999898888777431    113332       2222222222   2245679999999999864

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=99.51  E-value=1.1e-12  Score=117.61  Aligned_cols=258  Identities=13%  Similarity=0.038  Sum_probs=146.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCC-CCcchH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKF-PNIGLN   75 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~~~~~~   75 (329)
                      .+.+.|+|++|+|||+|++.+++.....      ....+++.    .........++..++..+......... ......
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~----~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~  119 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVN----ARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYE  119 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEE----TTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEE----CCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHH
Confidence            4679999999999999999999876442      12234444    334456677788888877543221111 111233


Q ss_pred             HHHhhh--cCceEEEEEecCCChh-------hHHHHhcccCCC--CCCcEEEEEeCchhHHHh-----c-CC-CeEEEec
Q 020206           76 FQSKRL--TRKKVLIVFDDVNHPR-------QIEFLIGNLDWF--ASGSRILITARDKQALIN-----C-GV-NKIYQIK  137 (329)
Q Consensus        76 ~l~~~~--~~~~~LlvlDdv~~~~-------~~~~l~~~l~~~--~~~~~ilitsr~~~~~~~-----~-~~-~~~~~l~  137 (329)
                      .+.+.+  .+++++|+||+++...       .+..++......  ..+..+|++|+.......     . .. ...+.++
T Consensus       120 ~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~  199 (387)
T 2v1u_A          120 RLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFP  199 (387)
T ss_dssp             HHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBC
T ss_pred             HHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeC
Confidence            444443  3468999999996432       233333322211  345567777765421100     1 11 2578999


Q ss_pred             CCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhc---CCchHHHHHHhhhcC---------CCHHHHHHHHHhhccC
Q 020206          138 ELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ---GVPIALKILGRFLFR---------KRKEVWENAISKLEMV  205 (329)
Q Consensus       138 ~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~---g~Plal~~~~~~l~~---------~~~~~~~~~~~~l~~~  205 (329)
                      +++.++..+++...+..........++.++.+++.++   |+|..+..+......         -....+.......   
T Consensus       200 ~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~---  276 (387)
T 2v1u_A          200 PYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI---  276 (387)
T ss_dssp             CCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH---
T ss_pred             CCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH---
Confidence            9999999999988753111111122345788888998   999544443322211         1234444433332   


Q ss_pred             ChhhHHHHHHhhhcCCChhhHhHHHhhhc-ccC--ccChhHHHH----HHHhC---C---cchhhhHHHHhhccceeee
Q 020206          206 PQMEIQEVLKISYDGLDDKEKNIFLDIAC-FLV--GEDRDIVTK----YLNAC---E---FFATSGIEVLVDKSLITIS  271 (329)
Q Consensus       206 ~~~~~~~~l~~~~~~L~~~~~~~l~~ls~-~~~--~~~~~~l~~----~~~~~---~---~~~~~~l~~L~~~~Ll~~~  271 (329)
                          ....+..++..+++..+.++..++. +.+  .++...+..    ++...   .   ......++.|...|+++..
T Consensus       277 ----~~~~~~~~~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~  351 (387)
T 2v1u_A          277 ----ERDRVSEVVRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSR  351 (387)
T ss_dssp             ----HHHHHHHHHHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEE
T ss_pred             ----hhchHHHHHHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEE
Confidence                2235666789999999988887773 321  233332222    22111   1   1234578999999999863

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=99.36  E-value=2.1e-11  Score=101.80  Aligned_cols=173  Identities=14%  Similarity=0.045  Sum_probs=100.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHH----hcCCCCCCCCCcchHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTL----LNDGNMNKFPNIGLNFQSK   79 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~l~~   79 (329)
                      +.+.|+|++|+|||+|++.+++.....+......+        ...... ..+....    ................+.+
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~--------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNCETGITATPC--------GVCDNC-REIEQGRFVDLIEIDAASRTKVEDTRDLLD  116 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCC--------SCSHHH-HHHHTTCCSSEEEEETTCGGGHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC--------cccHHH-HHHhccCCcceEEecCcccccHHHHHHHHH
Confidence            57899999999999999999987754332110000        000000 0000000    0000000000000111111


Q ss_pred             h-----hcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHHH--hcCCCeEEEecCCChhhhHHHHhh
Q 020206           80 R-----LTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQALI--NCGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        80 ~-----~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~--~~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                      .     ..+++.+||+||++.  ......++..+.....+..+|+||+......  .......+.+++++.++..+++..
T Consensus       117 ~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~  196 (250)
T 1njg_A          117 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH  196 (250)
T ss_dssp             SCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred             HhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHH
Confidence            1     134678999999953  4556666665554456778888887653211  123346899999999999999988


Q ss_pred             hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      .......  ...++.++.|++.++|+|..+..++..+
T Consensus       197 ~~~~~~~--~~~~~~~~~l~~~~~G~~~~~~~~~~~~  231 (250)
T 1njg_A          197 ILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQA  231 (250)
T ss_dssp             HHHHTTC--CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHhcCC--CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            7632221  2335668899999999999988876554

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=99.28  E-value=1.3e-10  Score=95.75  Aligned_cols=164  Identities=13%  Similarity=0.051  Sum_probs=97.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC-CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      +.+.|+|++|+|||++++.+++.+.... ...+....   .........+. .....+.....              ...
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~~~--------------~~~  100 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN---ASDERGIDVVR-HKIKEFARTAP--------------IGG  100 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEE---TTCTTCHHHHH-HHHHHHHTSCC--------------STT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHhccccccceEEec---cccccChHHHH-HHHHHHhcccC--------------CCc
Confidence            3489999999999999999998764332 22222211   11111222222 12222111100              112


Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHH-H-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQAL-I-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      .++.+|++||++.  ......+...+.....+..+|+||+..... . .......+.+++++.++..+++...+..... 
T Consensus       101 ~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~-  179 (226)
T 2chg_A          101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-  179 (226)
T ss_dssp             CSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred             cCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCC-
Confidence            5678999999954  334444444443335577888888765311 1 1133458899999999999999887632111 


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                       ...++....+++.++|+|..+..+...+
T Consensus       180 -~~~~~~~~~l~~~~~g~~r~l~~~l~~~  207 (226)
T 2chg_A          180 -KITEDGLEALIYISGGDFRKAINALQGA  207 (226)
T ss_dssp             -CBCHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence             1334668889999999999765554433

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=99.14  E-value=1.5e-09  Score=94.67  Aligned_cols=159  Identities=16%  Similarity=0.162  Sum_probs=94.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC-CCc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR-FEG-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      +.+.|+|++|+|||++|+.+++.+... +.. .+++.    ....... +.++.+...+.....              ..
T Consensus        43 ~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~----~~~~~~~-~~i~~~~~~~~~~~~--------------~~  103 (323)
T 1sxj_B           43 PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN----ASDDRGI-DVVRNQIKHFAQKKL--------------HL  103 (323)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC----TTSCCSH-HHHHTHHHHHHHBCC--------------CC
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec----CccccCh-HHHHHHHHHHHhccc--------------cC
Confidence            348999999999999999999986432 221 22222    1111122 222222222221100              01


Q ss_pred             -cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHH-H-hcCCCeEEEecCCChhhhHHHHhhhhcCCC
Q 020206           82 -TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQAL-I-NCGVNKIYQIKELVHVDALKLLNQCAFGRD  156 (329)
Q Consensus        82 -~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~  156 (329)
                       .+++.+||+||++.  ......+...+.....+..+|++|+..... . .......+.+++++.++..+++...+....
T Consensus       104 ~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~  183 (323)
T 1sxj_B          104 PPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLED  183 (323)
T ss_dssp             CTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcC
Confidence             34578999999964  333444444443334567788887664211 1 123446899999999999999987652211


Q ss_pred             CCCCchHHHHHHHHHHhcCCchHHHHH
Q 020206          157 HPDASYIELTHEAIKYAQGVPIALKIL  183 (329)
Q Consensus       157 ~~~~~~~~~~~~i~~~~~g~Plal~~~  183 (329)
                      .  ...++.+..+++.++|+|..+...
T Consensus       184 ~--~~~~~~~~~l~~~~~G~~r~a~~~  208 (323)
T 1sxj_B          184 V--KYTNDGLEAIIFTAEGDMRQAINN  208 (323)
T ss_dssp             C--CBCHHHHHHHHHHHTTCHHHHHHH
T ss_pred             C--CCCHHHHHHHHHHcCCCHHHHHHH
Confidence            1  133466889999999999654433

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=99.09  E-value=9.3e-09  Score=89.82  Aligned_cols=237  Identities=14%  Similarity=0.084  Sum_probs=133.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +.+.|+|++|+|||++|+.+++.....   ..++.    ........++..    .+                 .. ...
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~~~---~~~~~----~~~~~~~~~l~~----~l-----------------~~-~~~   89 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELGVN---LRVTS----GPAIEKPGDLAA----IL-----------------AN-SLE   89 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHTCC---EEEEC----TTTCCSHHHHHH----HH-----------------TT-TCC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCC---EEEEe----ccccCChHHHHH----HH-----------------HH-hcc
Confidence            568999999999999999999876422   22332    111111222211    11                 10 013


Q ss_pred             ceEEEEEecCCCh--hhHHHHhcccCCC------------------CCCcEEEEEeCchhHH-Hhc--CCCeEEEecCCC
Q 020206           84 KKVLIVFDDVNHP--RQIEFLIGNLDWF------------------ASGSRILITARDKQAL-INC--GVNKIYQIKELV  140 (329)
Q Consensus        84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~------------------~~~~~ilitsr~~~~~-~~~--~~~~~~~l~~l~  140 (329)
                      .+.+|++|+++..  .....++..+...                  .++..+|.+|...... ..+  .....+.+++++
T Consensus        90 ~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~  169 (324)
T 1hqc_A           90 EGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYT  169 (324)
T ss_dssp             TTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCC
T ss_pred             CCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCC
Confidence            4569999999643  2333333222110                  1234566666543211 111  122578999999


Q ss_pred             hhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCC---------CHHHHHHHHHhhccCChhhHH
Q 020206          141 HVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRK---------RKEVWENAISKLEMVPQMEIQ  211 (329)
Q Consensus       141 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~---------~~~~~~~~~~~l~~~~~~~~~  211 (329)
                      .++..+++.........  ...++....+++.+.|+|..+..+...+...         ....+.....           
T Consensus       170 ~~e~~~~l~~~~~~~~~--~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~-----------  236 (324)
T 1hqc_A          170 PEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALA-----------  236 (324)
T ss_dssp             HHHHHHHHHHHHHTTTC--CCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHH-----------
T ss_pred             HHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHH-----------
Confidence            99999999887633221  2345678999999999999888776554321         1111211111           


Q ss_pred             HHHHhhhcCCChhhHhHHHhhh-ccc-CccChhHHHHHHHhCCcchhhhHHH-HhhccceeeecCCceeccHHHHH
Q 020206          212 EVLKISYDGLDDKEKNIFLDIA-CFL-VGEDRDIVTKYLNACEFFATSGIEV-LVDKSLITISEYNKIRMHDLMRN  284 (329)
Q Consensus       212 ~~l~~~~~~L~~~~~~~l~~ls-~~~-~~~~~~~l~~~~~~~~~~~~~~l~~-L~~~~Ll~~~~~~~~~~H~lir~  284 (329)
                       .+......+++.++..+..+. .+. ..++...++..++.+.......++. +.+.++++....|+ .+-+...+
T Consensus       237 -~~~~~~~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~lgi~~~tl~~~l~~~~i~~~li~~~~~g~-~~~~~~~~  310 (324)
T 1hqc_A          237 -ALGLDELGLEKRDREILEVLILRFGGGPVGLATLATALSEDPGTLEEVHEPYLIRQGLLKRTPRGR-VPTELAYR  310 (324)
T ss_dssp             -HHTCCTTCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHTTSCHHHHHHHTHHHHHHTTSEEEETTEE-EECHHHHH
T ss_pred             -HhcccccCCCHHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHhcchhcCCccc-eecHHHHH
Confidence             112223457777777776655 333 3466777777775544344444444 88899998776664 33333333

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=99.06  E-value=2.7e-09  Score=93.22  Aligned_cols=163  Identities=15%  Similarity=0.072  Sum_probs=96.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC-Cc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF-EG-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      +.+.|+|++|+|||++|+.+++.+.... .. .+.+. .........+..    ....+.....              ..
T Consensus        47 ~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~~~~--------------~~  107 (327)
T 1iqp_A           47 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELN-ASDERGINVIRE----KVKEFARTKP--------------IG  107 (327)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEE-TTCHHHHHTTHH----HHHHHHHSCC--------------GG
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEee-ccccCchHHHHH----HHHHHHhhCC--------------cC
Confidence            3589999999999999999998864321 11 22222 111101011111    1111111100              11


Q ss_pred             cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHH-Hh-cCCCeEEEecCCChhhhHHHHhhhhcCCCC
Q 020206           82 TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQAL-IN-CGVNKIYQIKELVHVDALKLLNQCAFGRDH  157 (329)
Q Consensus        82 ~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~  157 (329)
                      .+++.++|+||++.  ......+...+.....+.++|+|+...... .. ......+.+++++.++..+++...+.....
T Consensus       108 ~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~  187 (327)
T 1iqp_A          108 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL  187 (327)
T ss_dssp             GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred             CCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCC
Confidence            24677999999964  344555555444445577888888665211 11 123357899999999999999887633221


Q ss_pred             CCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          158 PDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       158 ~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                        ...++.++.|++.++|+|..+..+...+
T Consensus       188 --~~~~~~~~~l~~~~~g~~r~~~~~l~~~  215 (327)
T 1iqp_A          188 --ELTEEGLQAILYIAEGDMRRAINILQAA  215 (327)
T ss_dssp             --EECHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence              2345678899999999999766555443

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=99.02  E-value=9.7e-09  Score=89.36  Aligned_cols=161  Identities=12%  Similarity=0.032  Sum_probs=95.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC-CCc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR-FEG-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.|+|++|+|||++|+.+++.+... +.. .+.+. .........+.+......    ...              ....
T Consensus        40 ~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----~~~--------------~~~~  100 (319)
T 2chq_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMN-ASDERGIDVVRHKIKEFA----RTA--------------PIGG  100 (319)
T ss_dssp             CEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEE-TTSTTCTTTSSHHHHHHH----HSC--------------CSSS
T ss_pred             eEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEe-CccccChHHHHHHHHHHH----hcC--------------CCCC
Confidence            48999999999999999999886322 111 12222 111000011111111110    000              0012


Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhH-HHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQA-LIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~-~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +++.++|+|+++.  ......+...+.....+..+|++|..... ... ......+.+.+++.++..+++...+..... 
T Consensus       101 ~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~-  179 (319)
T 2chq_A          101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGV-  179 (319)
T ss_dssp             CCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCC-
T ss_pred             CCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCC-
Confidence            4578999999953  34455565555544566777877765431 111 234468999999999999999887633221 


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                       ...++.+..++..++|++..+......
T Consensus       180 -~i~~~~l~~l~~~~~G~~r~~~~~l~~  206 (319)
T 2chq_A          180 -KITEDGLEALIYISGGDFRKAINALQG  206 (319)
T ss_dssp             -CBCHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence             234567889999999999876555433

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=98.94  E-value=1.6e-08  Score=90.13  Aligned_cols=172  Identities=14%  Similarity=0.049  Sum_probs=97.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHH----hcCCCCCCCCCcchHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTL----LNDGNMNKFPNIGLNFQSK   79 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~~~~~~~~~~~~~~~l~~   79 (329)
                      ..+.|+|++|+|||++++.+++......... ...    +   ..... ...+....    ................+.+
T Consensus        39 ~~~ll~G~~G~GKT~la~~la~~l~~~~~~~-~~~----~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  109 (373)
T 1jr3_A           39 HAYLFSGTRGVGKTSIARLLAKGLNCETGIT-ATP----C---GVCDN-CREIEQGRFVDLIEIDAASRTKVEDTRDLLD  109 (373)
T ss_dssp             SEEEEESCTTSSHHHHHHHHHHHHSCTTCSC-SSC----C---SSSHH-HHHHHTSCCSSCEEEETTCSCCSSCHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CCC----C---cccHH-HHHHhccCCCceEEecccccCCHHHHHHHHH
Confidence            4689999999999999999998765332110 000    0   00000 00111000    0000000000111222222


Q ss_pred             hh-----cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhH-H-HhcCCCeEEEecCCChhhhHHHHhh
Q 020206           80 RL-----TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQA-L-INCGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        80 ~~-----~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~-~-~~~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                      .+     .+++.+||+||++.  ......++..+...+.+..+|++|..... . ........+.+++++.++..+++..
T Consensus       110 ~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~  189 (373)
T 1jr3_A          110 NVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEH  189 (373)
T ss_dssp             HTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHH
T ss_pred             HHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHH
Confidence            22     24568999999953  44556666555544556677777764421 1 1123457899999999999999987


Q ss_pred             hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                      .+.....  ...++.+..|++.++|+|..+..+...
T Consensus       190 ~~~~~~~--~~~~~a~~~l~~~~~G~~r~~~~~l~~  223 (373)
T 1jr3_A          190 ILNEEHI--AHEPRALQLLARAAEGSLRDALSLTDQ  223 (373)
T ss_dssp             HHHHHTC--CBCHHHHHHHHHHSSSCHHHHHHHHHH
T ss_pred             HHHHcCC--CCCHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            6522111  133566888999999999988766543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=98.92  E-value=3.6e-08  Score=86.68  Aligned_cols=236  Identities=14%  Similarity=0.131  Sum_probs=130.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +.|.|+|++|+|||+||+.+++.....|   +.+. ....   .....+..                     .+..  ..
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~~~---~~~~-~~~~---~~~~~~~~---------------------~~~~--~~  105 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSANI---KTTA-APMI---EKSGDLAA---------------------ILTN--LS  105 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTCCE---EEEE-GGGC---CSHHHHHH---------------------HHHT--CC
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCCCe---EEec-chhc---cchhHHHH---------------------HHHh--cc
Confidence            4689999999999999999988764322   1221 1111   11111111                     1111  23


Q ss_pred             ceEEEEEecCCC--hhhHHHHhcccCCC------------------CCCcEEEEEeCchhHH-H--hcCCCeEEEecCCC
Q 020206           84 KKVLIVFDDVNH--PRQIEFLIGNLDWF------------------ASGSRILITARDKQAL-I--NCGVNKIYQIKELV  140 (329)
Q Consensus        84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~------------------~~~~~ilitsr~~~~~-~--~~~~~~~~~l~~l~  140 (329)
                      .+.+|+||+++.  ......++..+...                  .++..+|.+|...... .  .......+.+++++
T Consensus       106 ~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~  185 (338)
T 3pfi_A          106 EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYK  185 (338)
T ss_dssp             TTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCC
T ss_pred             CCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcC
Confidence            456999999953  33333333322211                  1124566665543211 1  11233689999999


Q ss_pred             hhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHHHHH---Hhh
Q 020206          141 HVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVL---KIS  217 (329)
Q Consensus       141 ~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l---~~~  217 (329)
                      .++...++........  ....++..+.+++.+.|+|..+..+...+..     +... ..-.....+.+...+   ...
T Consensus       186 ~~e~~~il~~~~~~~~--~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~-----~a~~-~~~~~i~~~~~~~~~~~~~~~  257 (338)
T 3pfi_A          186 DSELALILQKAALKLN--KTCEEKAALEIAKRSRSTPRIALRLLKRVRD-----FADV-NDEEIITEKRANEALNSLGVN  257 (338)
T ss_dssp             HHHHHHHHHHHHHHTT--CEECHHHHHHHHHTTTTCHHHHHHHHHHHHH-----HHHH-TTCSEECHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhcC--CCCCHHHHHHHHHHHCcCHHHHHHHHHHHHH-----HHHh-hcCCccCHHHHHHHHHHhCCc
Confidence            9999999987763221  2234567888999999999776665544311     0000 000001111222222   222


Q ss_pred             hcCCChhhHhHHHhhhccc-CccChhHHHHHHHhCCcchhhhHH-HHhhccceeeecCCcee
Q 020206          218 YDGLDDKEKNIFLDIACFL-VGEDRDIVTKYLNACEFFATSGIE-VLVDKSLITISEYNKIR  277 (329)
Q Consensus       218 ~~~L~~~~~~~l~~ls~~~-~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Ll~~~~~~~~~  277 (329)
                      ...+....++++..++-.. ..++...++..++.+.......++ .|.+.++|.....|+..
T Consensus       258 ~~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~lg~~~~tl~~~l~~~l~~~gli~~~~~g~~~  319 (338)
T 3pfi_A          258 ELGFDAMDLRYLELLTAAKQKPIGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIA  319 (338)
T ss_dssp             TTCCCHHHHHHHHHHHHSCSCCBCHHHHHHHTTCCHHHHHHTTHHHHHHTTSEEEETTEEEE
T ss_pred             ccCCCHHHHHHHHHHHHhcCCCchHHHHHHHhCCCHHHHHHHHhHHHHHcCceecCCCcccc
Confidence            3345555566666665442 235677777777655555555666 89999999887666543

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=98.90  E-value=5.1e-08  Score=85.52  Aligned_cols=96  Identities=13%  Similarity=0.097  Sum_probs=67.0

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      +++-++|+|+++.  .+....++..+...+.+..+|++|.+.. .... .+....+.+++++.++..+++....      
T Consensus       107 ~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~------  180 (334)
T 1a5t_A          107 GGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV------  180 (334)
T ss_dssp             SSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC------
T ss_pred             CCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc------
Confidence            4567999999963  4556667766665555677777776542 2221 2455789999999999999998775      


Q ss_pred             CCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          159 DASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                       ...++.+..+++.++|.|..+..+..
T Consensus       181 -~~~~~~~~~l~~~s~G~~r~a~~~l~  206 (334)
T 1a5t_A          181 -TMSQDALLAALRLSAGSPGAALALFQ  206 (334)
T ss_dssp             -CCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred             -CCCHHHHHHHHHHcCCCHHHHHHHhc
Confidence             12245578899999999987655543

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=98.90  E-value=4.2e-09  Score=87.76  Aligned_cols=154  Identities=14%  Similarity=0.112  Sum_probs=91.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+|||+|++.+++........+.++. .......  .                        ...+ +.+ 
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~-~~~~~~~--~------------------------~~~~-~~~-  102 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP-LGIHASI--S------------------------TALL-EGL-  102 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE-GGGGGGS--C------------------------GGGG-TTG-
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE-HHHHHHH--H------------------------HHHH-Hhc-
Confidence            567899999999999999999998765544455554 1111110  0                        0000 011 


Q ss_pred             CceEEEEEecCCChh--h--HHHHhcccCCC-CCCc-EEEEEeCchhH---------HHhcCCCeEEEecCCChhhhHHH
Q 020206           83 RKKVLIVFDDVNHPR--Q--IEFLIGNLDWF-ASGS-RILITARDKQA---------LINCGVNKIYQIKELVHVDALKL  147 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~--~--~~~l~~~l~~~-~~~~-~ilitsr~~~~---------~~~~~~~~~~~l~~l~~~e~~~l  147 (329)
                      .++.+|++||++...  .  ...+...+... ..+. .+|+||+....         ...+.....+.+++++.++..++
T Consensus       103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~  182 (242)
T 3bos_A          103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAA  182 (242)
T ss_dssp             GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHH
T ss_pred             cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHH
Confidence            345699999995321  1  22232221110 1222 47777764321         11111226799999999999999


Q ss_pred             HhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          148 LNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       148 l~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      +...+.....  ...++.++.+++.++|++..+..+...+
T Consensus       183 l~~~~~~~~~--~~~~~~~~~l~~~~~g~~r~l~~~l~~~  220 (242)
T 3bos_A          183 LQRRAAMRGL--QLPEDVGRFLLNRMARDLRTLFDVLDRL  220 (242)
T ss_dssp             HHHHHHHTTC--CCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCC--CCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            9887632211  2335678899999999998776655444

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=98.89  E-value=9.5e-09  Score=93.52  Aligned_cols=164  Identities=13%  Similarity=0.084  Sum_probs=96.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      .+.+.|+|++|+|||+|++.+++.....++.  ++++.          ...+...+...+...         ....+...
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~----------~~~~~~~~~~~~~~~---------~~~~~~~~  190 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT----------SEKFLNDLVDSMKEG---------KLNEFREK  190 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEE----------HHHHHHHHHHHHHTT---------CHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee----------HHHHHHHHHHHHHcc---------cHHHHHHH
Confidence            3568999999999999999999987655422  33333          112223333332211         12233333


Q ss_pred             hcCceEEEEEecCCCh----hhHHHHhcccCC-CCCCcEEEEEeCchhH---------HHhcCCCeEEEecCCChhhhHH
Q 020206           81 LTRKKVLIVFDDVNHP----RQIEFLIGNLDW-FASGSRILITARDKQA---------LINCGVNKIYQIKELVHVDALK  146 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~~----~~~~~l~~~l~~-~~~~~~ilitsr~~~~---------~~~~~~~~~~~l~~l~~~e~~~  146 (329)
                      ...++.+|+|||++..    ...+.++..+.. ...+..+|+||.+...         ...+.....+.+++++.++..+
T Consensus       191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~  270 (440)
T 2z4s_A          191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKS  270 (440)
T ss_dssp             HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHH
T ss_pred             hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHH
Confidence            3335679999999422    233334333221 1346678888876321         1112233567899999999999


Q ss_pred             HHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          147 LLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       147 ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      ++...+.....  ...++++..|+..+.|++..+..+...+
T Consensus       271 iL~~~~~~~~~--~i~~e~l~~la~~~~gn~R~l~~~L~~~  309 (440)
T 2z4s_A          271 IARKMLEIEHG--ELPEEVLNFVAENVDDNLRRLRGAIIKL  309 (440)
T ss_dssp             HHHHHHHHHTC--CCCTTHHHHHHHHCCSCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence            99877632111  1123457889999999998776654433

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=98.78  E-value=1.2e-07  Score=82.83  Aligned_cols=160  Identities=13%  Similarity=0.103  Sum_probs=92.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+|||+|++.+++.....-...+++.    .      .++...+...+...         ....+.....
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~----~------~~~~~~~~~~~~~~---------~~~~~~~~~~   97 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----A------DDFAQAMVEHLKKG---------TINEFRNMYK   97 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----H------HHHHHHHHHHHHHT---------CHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE----H------HHHHHHHHHHHHcC---------cHHHHHHHhc
Confidence            357899999999999999999998755423344443    1      12222222222211         1112222222


Q ss_pred             CceEEEEEecCCCh----hhHHHHhcccCC-CCCCcEEEEEeCchhH---------HHhcCCCeEEEecCCChhhhHHHH
Q 020206           83 RKKVLIVFDDVNHP----RQIEFLIGNLDW-FASGSRILITARDKQA---------LINCGVNKIYQIKELVHVDALKLL  148 (329)
Q Consensus        83 ~~~~LlvlDdv~~~----~~~~~l~~~l~~-~~~~~~ilitsr~~~~---------~~~~~~~~~~~l~~l~~~e~~~ll  148 (329)
                       ++.+|++||++..    .....+...+.. ...+..+|+|+.....         ...+.....+.+++ +.++..+++
T Consensus        98 -~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il  175 (324)
T 1l8q_A           98 -SVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKII  175 (324)
T ss_dssp             -TCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHH
T ss_pred             -CCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHH
Confidence             3569999999532    222333322211 1235577777764321         11122335789999 999999999


Q ss_pred             hhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          149 NQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                      ...+.....  ...++....|++.+ |++..+..+...
T Consensus       176 ~~~~~~~~~--~l~~~~l~~l~~~~-g~~r~l~~~l~~  210 (324)
T 1l8q_A          176 KEKLKEFNL--ELRKEVIDYLLENT-KNVREIEGKIKL  210 (324)
T ss_dssp             HHHHHHTTC--CCCHHHHHHHHHHC-SSHHHHHHHHHH
T ss_pred             HHHHHhcCC--CCCHHHHHHHHHhC-CCHHHHHHHHHH
Confidence            887632221  23356788899999 988765554433

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=98.77  E-value=6.5e-08  Score=83.51  Aligned_cols=146  Identities=8%  Similarity=0.056  Sum_probs=81.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC-----Cc--eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF-----EG--SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLN   75 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   75 (329)
                      ++.+.|+|++|+|||++++.+++.+....     +.  .+++.    .....+...++..|+.++.............+.
T Consensus        45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN----c~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~  120 (318)
T 3te6_A           45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID----ALELAGMDALYEKIWFAISKENLCGDISLEALN  120 (318)
T ss_dssp             CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE----TTCCC--HHHHHHHHHHHSCCC--CCCCHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe----ccccCCHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            56789999999999999999999875432     11  23333    223455667788888887554321111111122


Q ss_pred             -HHHhh--hcCceEEEEEecCCCh---hhHHHHhcccCCCCCCcEEEEEeCch---h-HHHh---cC-CCeEEEecCCCh
Q 020206           76 -FQSKR--LTRKKVLIVFDDVNHP---RQIEFLIGNLDWFASGSRILITARDK---Q-ALIN---CG-VNKIYQIKELVH  141 (329)
Q Consensus        76 -~l~~~--~~~~~~LlvlDdv~~~---~~~~~l~~~l~~~~~~~~ilitsr~~---~-~~~~---~~-~~~~~~l~~l~~  141 (329)
                       .+...  ..+++++++||+++..   +.+-.++...........+|.++...   . .+..   .+ ....+.+++++.
T Consensus       121 ~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~  200 (318)
T 3te6_A          121 FYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDK  200 (318)
T ss_dssp             HHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCH
T ss_pred             HHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCH
Confidence             22221  2456899999999653   22222322111111223344344332   1 1110   01 125799999999


Q ss_pred             hhhHHHHhhhh
Q 020206          142 VDALKLLNQCA  152 (329)
Q Consensus       142 ~e~~~ll~~~~  152 (329)
                      +|..+++..++
T Consensus       201 ~el~~Il~~Rl  211 (318)
T 3te6_A          201 NELQQMIITRL  211 (318)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999887

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.77  E-value=1.6e-07  Score=87.22  Aligned_cols=168  Identities=13%  Similarity=0.090  Sum_probs=88.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHH--hh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS--KR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~--~~   80 (329)
                      .+.+.|+|++|+|||++|+.+++...  +. .+.+.    .+.... ..+....+........   ... ......  ..
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~--~~-~i~in----~s~~~~-~~~~~~~i~~~~~~~~---~~~-~~~~~~~~~~  144 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELG--YD-ILEQN----ASDVRS-KTLLNAGVKNALDNMS---VVG-YFKHNEEAQN  144 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT--CE-EEEEC----TTSCCC-HHHHHHTGGGGTTBCC---STT-TTTC----CC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC--CC-EEEEe----CCCcch-HHHHHHHHHHHhcccc---HHH-HHhhhhhhhh
Confidence            37899999999999999999998872  11 22222    111111 1222222222111110   000 000000  01


Q ss_pred             hcCceEEEEEecCCCh-----hhHHHHhcccCCCCCCcEEEEEeCchh---HHHhcCCCeEEEecCCChhhhHHHHhhhh
Q 020206           81 LTRKKVLIVFDDVNHP-----RQIEFLIGNLDWFASGSRILITARDKQ---ALINCGVNKIYQIKELVHVDALKLLNQCA  152 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilitsr~~~---~~~~~~~~~~~~l~~l~~~e~~~ll~~~~  152 (329)
                      ...++.+|++|+++..     ..+..+...+..  .+..+|+++.+..   ..........+.+++++.++..+++...+
T Consensus       145 ~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~  222 (516)
T 1sxj_A          145 LNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIA  222 (516)
T ss_dssp             SSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHH
Confidence            2356789999999432     112333332221  2334555444321   11222345678999999999999987765


Q ss_pred             cCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhh
Q 020206          153 FGRDHPDASYIELTHEAIKYAQGVPIALKILGRF  186 (329)
Q Consensus       153 ~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~  186 (329)
                      ......  ..++.+..|++.++|++..+..+...
T Consensus       223 ~~~~~~--i~~~~l~~la~~s~GdiR~~i~~L~~  254 (516)
T 1sxj_A          223 IREKFK--LDPNVIDRLIQTTRGDIRQVINLLST  254 (516)
T ss_dssp             HHHTCC--CCTTHHHHHHHHTTTCHHHHHHHHTH
T ss_pred             HHcCCC--CCHHHHHHHHHHcCCcHHHHHHHHHH
Confidence            221111  11244888999999977665554433

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=98.76  E-value=4e-07  Score=76.81  Aligned_cols=160  Identities=12%  Similarity=0.039  Sum_probs=84.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+-+.|+|++|+|||++|+.+++.....   .+.+. .........- . ....                ....+.....
T Consensus        39 ~~~vll~G~~GtGKT~la~~la~~~~~~---~~~~~-~~~~~~~~~~-~-~~~~----------------~~~~~~~a~~   96 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLAKAVATEAQVP---FLAMA-GAEFVEVIGG-L-GAAR----------------VRSLFKEARA   96 (262)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCC---EEEEE-TTTTSSSSTT-H-HHHH----------------HHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCC---EEEec-hHHHHhhccC-h-hHHH----------------HHHHHHHHHh
Confidence            3568899999999999999999876432   12222 1111110000 0 0000                1112222223


Q ss_pred             CceEEEEEecCCCh-----------------hhHHHHhcccCCC--CCCcEEEEEeCchhHHH-h-c---CCCeEEEecC
Q 020206           83 RKKVLIVFDDVNHP-----------------RQIEFLIGNLDWF--ASGSRILITARDKQALI-N-C---GVNKIYQIKE  138 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-----------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~~-~-~---~~~~~~~l~~  138 (329)
                      ..+.+|+||+++..                 ..+..++..+...  ..+..+|.||....... . .   .....+.++.
T Consensus        97 ~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~  176 (262)
T 2qz4_A           97 RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDL  176 (262)
T ss_dssp             TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCS
T ss_pred             cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCC
Confidence            45789999999643                 1123333332211  22445566665443211 1 1   2346788999


Q ss_pred             CChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch-HHHHHHh
Q 020206          139 LVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKILGR  185 (329)
Q Consensus       139 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~  185 (329)
                      .+.++-.+++........ ...........++..+.|++- .|..+..
T Consensus       177 p~~~~r~~il~~~~~~~~-~~~~~~~~~~~l~~~~~g~~~~~l~~l~~  223 (262)
T 2qz4_A          177 PTLQERREIFEQHLKSLK-LTQSSTFYSQRLAELTPGFSGADIANICN  223 (262)
T ss_dssp             CCHHHHHHHHHHHHHHTT-CCBTHHHHHHHHHHTCTTCCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCC-CCcchhhHHHHHHHHCCCCCHHHHHHHHH
Confidence            999999999987663222 222222235778888888754 5555443

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=98.75  E-value=3.6e-07  Score=81.14  Aligned_cols=99  Identities=10%  Similarity=-0.039  Sum_probs=60.7

Q ss_pred             eEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCc------------h-hH-HHhcCCCeEEEecCCChhhhHHHH
Q 020206           85 KVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARD------------K-QA-LINCGVNKIYQIKELVHVDALKLL  148 (329)
Q Consensus        85 ~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~------------~-~~-~~~~~~~~~~~l~~l~~~e~~~ll  148 (329)
                      +.+|+||+++.  .+....+...+...... .+++++..            . .. .........+.+++++.++..+++
T Consensus       190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~il  268 (368)
T 3uk6_A          190 PGVLFIDEVHMLDIESFSFLNRALESDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQIL  268 (368)
T ss_dssp             BCEEEEESGGGSBHHHHHHHHHHTTCTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred             CceEEEhhccccChHHHHHHHHHhhCcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHHHH
Confidence            46999999953  34455555544432223 34444431            1 00 111233456899999999999999


Q ss_pred             hhhhcCCCCCCCchHHHHHHHHHHhc-CCchHHHHHHhh
Q 020206          149 NQCAFGRDHPDASYIELTHEAIKYAQ-GVPIALKILGRF  186 (329)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~i~~~~~-g~Plal~~~~~~  186 (329)
                      ...+....  ....++.+..|++.+. |+|..+..+...
T Consensus       269 ~~~~~~~~--~~~~~~~l~~l~~~~~~G~~r~~~~ll~~  305 (368)
T 3uk6_A          269 RIRCEEED--VEMSEDAYTVLTRIGLETSLRYAIQLITA  305 (368)
T ss_dssp             HHHHHHTT--CCBCHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHcC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence            97763222  1244567899999998 999877665543

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=98.75  E-value=4.1e-07  Score=77.32  Aligned_cols=146  Identities=12%  Similarity=0.016  Sum_probs=77.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+|||+||+.+++....  +.+.+.+ ..... ..........                 ....+.....
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~~~~--~~~~i~~-~~~~~-g~~~~~~~~~-----------------~~~~~~~~~~  122 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEESNF--PFIKICS-PDKMI-GFSETAKCQA-----------------MKKIFDDAYK  122 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTC--SEEEEEC-GGGCT-TCCHHHHHHH-----------------HHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHhCC--CEEEEeC-HHHhc-CCchHHHHHH-----------------HHHHHHHHHh
Confidence            467899999999999999999987532  2222211 11000 0000000000                 1111222233


Q ss_pred             CceEEEEEecCCCh------------hhHHHHhcccCC---CCCCcEEEEEeCchhHHHh--c--CCCeEEEecCCCh-h
Q 020206           83 RKKVLIVFDDVNHP------------RQIEFLIGNLDW---FASGSRILITARDKQALIN--C--GVNKIYQIKELVH-V  142 (329)
Q Consensus        83 ~~~~LlvlDdv~~~------------~~~~~l~~~l~~---~~~~~~ilitsr~~~~~~~--~--~~~~~~~l~~l~~-~  142 (329)
                      ..+.+|+||+++..            ..+..+...+..   ......+|.||........  .  .....+.+++++. +
T Consensus       123 ~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~  202 (272)
T 1d2n_A          123 SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGE  202 (272)
T ss_dssp             SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHH
T ss_pred             cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHH
Confidence            56789999998432            223333333322   1223345666666543332  1  2346788998887 6


Q ss_pred             hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCC
Q 020206          143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV  176 (329)
Q Consensus       143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~  176 (329)
                      +...++....    .   ..++....+++.+.|.
T Consensus       203 ~i~~i~~~~~----~---~~~~~~~~l~~~~~g~  229 (272)
T 1d2n_A          203 QLLEALELLG----N---FKDKERTTIAQQVKGK  229 (272)
T ss_dssp             HHHHHHHHHT----C---SCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhcC----C---CCHHHHHHHHHHhcCC
Confidence            6666665432    1   1245588888998884

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.75  E-value=5.8e-07  Score=79.24  Aligned_cols=170  Identities=11%  Similarity=0.063  Sum_probs=93.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC--CCc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR--FEG-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      -+.|+|++|+|||++|+.+++.+...  +.. ...+. .   ...... ..+......+...... ...   ........
T Consensus        60 ~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~-~~~---~~~~~~~~  130 (353)
T 1sxj_D           60 HMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN-A---SDERGI-SIVREKVKNFARLTVS-KPS---KHDLENYP  130 (353)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC-S---SSCCCH-HHHTTHHHHHHHSCCC-CCC---TTHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEc-c---ccccch-HHHHHHHHHHhhhccc-ccc---hhhcccCC
Confidence            48999999999999999999875421  211 22222 1   111122 2222222222221110 000   00111111


Q ss_pred             cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCC
Q 020206           82 TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDH  157 (329)
Q Consensus        82 ~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~  157 (329)
                      ...+-+|++|+++.  ......++..+.......++|+++.... .... ......+.+.+++.++...++...+.....
T Consensus       131 ~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~  210 (353)
T 1sxj_D          131 CPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENV  210 (353)
T ss_dssp             CCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred             CCCceEEEEECCCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCC
Confidence            23557999999853  3334445444443345667777765442 1111 122347889999999999999887633221


Q ss_pred             CCCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          158 PDASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       158 ~~~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                        ...++.++.|++.++|+|..+..+..
T Consensus       211 --~i~~~~l~~l~~~~~G~~r~~~~~l~  236 (353)
T 1sxj_D          211 --KCDDGVLERILDISAGDLRRGITLLQ  236 (353)
T ss_dssp             --CCCHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             --CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence              23356789999999999987555443

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=98.74  E-value=1.9e-07  Score=79.89  Aligned_cols=156  Identities=16%  Similarity=0.180  Sum_probs=84.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+-+.|+|++|+|||+||+.+++.....    +............ ......                 .....+.....
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~~~~~----~~~v~~~~~~~~~-~~~~~~-----------------~~~~~~~~~~~  108 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATETNAT----FIRVVGSELVKKF-IGEGAS-----------------LVKDIFKLAKE  108 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHHTTCE----EEEEEGGGGCCCS-TTHHHH-----------------HHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehHHHHHhc-cchHHH-----------------HHHHHHHHHHH
Confidence            3568999999999999999999876432    2221111111100 000000                 01111222233


Q ss_pred             CceEEEEEecCCCh----------------hhHHHHhcccC--CCCCCcEEEEEeCchhHHH-----hcCCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHP----------------RQIEFLIGNLD--WFASGSRILITARDKQALI-----NCGVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~----------------~~~~~l~~~l~--~~~~~~~ilitsr~~~~~~-----~~~~~~~~~l~~l  139 (329)
                      ..+.+|+||+++..                ..+..++..+.  ....+..+|.||.......     .......+.++.+
T Consensus       109 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p  188 (285)
T 3h4m_A          109 KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAP  188 (285)
T ss_dssp             TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCC
T ss_pred             cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCC
Confidence            45689999999432                11222332221  1123455666776442111     1123347889999


Q ss_pred             ChhhhHHHHhhhhcCCCC-CCCchHHHHHHHHHHhcC-CchHHHHHH
Q 020206          140 VHVDALKLLNQCAFGRDH-PDASYIELTHEAIKYAQG-VPIALKILG  184 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~~-~~~~~~~~~~~i~~~~~g-~Plal~~~~  184 (329)
                      +.++-.+++......... ....    ...++..+.| +|..|..+.
T Consensus       189 ~~~~r~~il~~~~~~~~~~~~~~----~~~l~~~~~g~~~~~i~~l~  231 (285)
T 3h4m_A          189 DEKGRLEILKIHTRKMNLAEDVN----LEEIAKMTEGCVGAELKAIC  231 (285)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCC----HHHHHHHCTTCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCCCCcCC----HHHHHHHcCCCCHHHHHHHH
Confidence            999999999887633221 1112    6778888887 555665544

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=98.70  E-value=1.5e-07  Score=85.65  Aligned_cols=157  Identities=16%  Similarity=0.188  Sum_probs=90.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +.+.|+|++|+|||+||+.+++.....|.   .+.    . ......++. .+....                ......+
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~---~l~----a-~~~~~~~ir-~~~~~a----------------~~~~~~~  105 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVE---RIS----A-VTSGVKEIR-EAIERA----------------RQNRNAG  105 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEE---EEE----T-TTCCHHHHH-HHHHHH----------------HHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeE---EEE----e-ccCCHHHHH-HHHHHH----------------HHhhhcC
Confidence            56899999999999999999988653321   111    0 011222221 111110                1111235


Q ss_pred             ceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEE-EeCchhH---HHhcCCCeEEEecCCChhhhHHHHhhhhcCCC-
Q 020206           84 KKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILI-TARDKQA---LINCGVNKIYQIKELVHVDALKLLNQCAFGRD-  156 (329)
Q Consensus        84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ili-tsr~~~~---~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~-  156 (329)
                      ++.+|+||+++..  .....++..+..  ....+|. ||.+...   .........+.+++++.++...++........ 
T Consensus       106 ~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~  183 (447)
T 3pvs_A          106 RRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTR  183 (447)
T ss_dssp             CCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTT
T ss_pred             CCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhh
Confidence            6789999999542  333334444331  2334444 4444321   11123456888999999999999988763311 


Q ss_pred             ----CCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          157 ----HPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       157 ----~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                          ......++..+.|++.++|++..+..+...+
T Consensus       184 ~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a  218 (447)
T 3pvs_A          184 GYGGQDIVLPDETRRAIAELVNGDARRALNTLEMM  218 (447)
T ss_dssp             SSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             hhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence                1122456778999999999998776655443

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=98.68  E-value=1.6e-06  Score=75.46  Aligned_cols=157  Identities=15%  Similarity=0.095  Sum_probs=86.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      +-|.|+|++|+|||+||+.+++....   ..++..........  ......                    ....+....
T Consensus        46 ~~iLL~GppGtGKT~la~ala~~~~~---~~~~~i~~~~l~~~~~g~~~~~--------------------~~~lf~~a~  102 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSDLVSKWLGESEKL--------------------VKNLFQLAR  102 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHHHTTS---CEEEEEECCSSCCSSCCSCHHH--------------------HHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHcCC---CcEEEEEhHHHHhhhhhHHHHH--------------------HHHHHHHHH
Confidence            67999999999999999999988621   11221111111000  001111                    111122222


Q ss_pred             cCceEEEEEecCCCh-------------hhHHHHhcccCC---CCCCcEEEEEeCchh----HHHhcCCCeEEEecCCCh
Q 020206           82 TRKKVLIVFDDVNHP-------------RQIEFLIGNLDW---FASGSRILITARDKQ----ALINCGVNKIYQIKELVH  141 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~-------------~~~~~l~~~l~~---~~~~~~ilitsr~~~----~~~~~~~~~~~~l~~l~~  141 (329)
                      ..++.+|+||+++..             .....++..+..   ...+..+|.||....    .... .....+.++..+.
T Consensus       103 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~  181 (322)
T 1xwi_A          103 ENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRR-RFEKRIYIPLPEP  181 (322)
T ss_dssp             HTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHH-TCCEEEECCCCCH
T ss_pred             hcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHh-hcCeEEEeCCcCH
Confidence            356789999999543             112233333221   123444555554431    1111 4446788899999


Q ss_pred             hhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHhh
Q 020206          142 VDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILGRF  186 (329)
Q Consensus       142 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~  186 (329)
                      ++-.+++..........  ..+..+..|++.+.|+ +..|..++..
T Consensus       182 ~~r~~il~~~l~~~~~~--l~~~~l~~la~~t~G~sgadl~~l~~~  225 (322)
T 1xwi_A          182 HARAAMFKLHLGTTQNS--LTEADFRELGRKTDGYSGADISIIVRD  225 (322)
T ss_dssp             HHHHHHHHHHHTTCCBC--CCHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCC--CCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999998876322211  1245588899999987 4456665543

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=98.68  E-value=1.3e-06  Score=76.11  Aligned_cols=158  Identities=14%  Similarity=0.078  Sum_probs=87.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      .+-+.|+|++|+|||+||+.+++.....    ++..........  ......                    ....+...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~----~~~v~~~~l~~~~~g~~~~~--------------------~~~~f~~a  106 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVSKWMGESEKL--------------------VKQLFAMA  106 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCE----EEEEEHHHHHTTTGGGHHHH--------------------HHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCC----EEEEchHHHhhcccchHHHH--------------------HHHHHHHH
Confidence            3568999999999999999999886432    222211111000  001111                    11112222


Q ss_pred             hcCceEEEEEecCCCh-------------hhHHHHhcccC---CCCCCcEEEEEeCchhHHH---hcCCCeEEEecCCCh
Q 020206           81 LTRKKVLIVFDDVNHP-------------RQIEFLIGNLD---WFASGSRILITARDKQALI---NCGVNKIYQIKELVH  141 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~~-------------~~~~~l~~~l~---~~~~~~~ilitsr~~~~~~---~~~~~~~~~l~~l~~  141 (329)
                      ....+.+|+||+++..             .....++..+.   ....+..+|.||.......   .......+.++..+.
T Consensus       107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~  186 (322)
T 3eie_A          107 RENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDL  186 (322)
T ss_dssp             HHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCH
T ss_pred             HhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCH
Confidence            2346789999999532             11233333322   2233445555665532111   013445778889999


Q ss_pred             hhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcC-CchHHHHHHhh
Q 020206          142 VDALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGRF  186 (329)
Q Consensus       142 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~  186 (329)
                      ++-.+++.........  ...+.....|++.+.| .+-.|..++..
T Consensus       187 ~~r~~il~~~~~~~~~--~~~~~~l~~la~~t~g~sg~di~~l~~~  230 (322)
T 3eie_A          187 AARTTMFEINVGDTPC--VLTKEDYRTLGAMTEGYSGSDIAVVVKD  230 (322)
T ss_dssp             HHHHHHHHHHHTTCCC--CCCHHHHHHHHHTTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999999887733221  1224557889999987 45556555543

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=98.65  E-value=9.2e-07  Score=78.13  Aligned_cols=158  Identities=11%  Similarity=0.063  Sum_probs=86.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +-|.|+|++|+|||+||+.+++.....    ++.........             ....     .........+......
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~~~----~~~v~~~~l~~-------------~~~g-----~~~~~~~~~f~~a~~~  142 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEANST----FFSVSSSDLVS-------------KWMG-----ESEKLVKQLFAMAREN  142 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCE----EEEEEHHHHHS-------------CC--------CHHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCC----EEEeeHHHHhh-------------hhcc-----hHHHHHHHHHHHHHHc
Confidence            458999999999999999999987422    22211111100             0000     0000011112222234


Q ss_pred             ceEEEEEecCCChh-------------hHHHHhcccC---CCCCCcEEEEEeCchh----HHHhcCCCeEEEecCCChhh
Q 020206           84 KKVLIVFDDVNHPR-------------QIEFLIGNLD---WFASGSRILITARDKQ----ALINCGVNKIYQIKELVHVD  143 (329)
Q Consensus        84 ~~~LlvlDdv~~~~-------------~~~~l~~~l~---~~~~~~~ilitsr~~~----~~~~~~~~~~~~l~~l~~~e  143 (329)
                      .+.+|+||+++...             ....++..+.   ....+..||.||....    .... .....+.++..+.++
T Consensus       143 ~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r-Rf~~~i~i~~P~~~~  221 (355)
T 2qp9_X          143 KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR-RFERRIYIPLPDLAA  221 (355)
T ss_dssp             SSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH-TCCEEEECCCCCHHH
T ss_pred             CCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc-ccCEEEEeCCcCHHH
Confidence            67899999995321             1233333222   1123445555665441    1111 445678899999999


Q ss_pred             hHHHHhhhhcCCCCCCCchHHHHHHHHHHhcC-CchHHHHHHhh
Q 020206          144 ALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGRF  186 (329)
Q Consensus       144 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~  186 (329)
                      -.+++.........  ......+..|++.+.| .+..|..++..
T Consensus       222 r~~il~~~l~~~~~--~~~~~~l~~la~~t~G~sg~dl~~l~~~  263 (355)
T 2qp9_X          222 RTTMFEINVGDTPS--VLTKEDYRTLGAMTEGYSGSDIAVVVKD  263 (355)
T ss_dssp             HHHHHHHHHTTSCB--CCCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            99999887632221  1124558889999998 45556665543

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=98.65  E-value=3.3e-07  Score=79.36  Aligned_cols=148  Identities=9%  Similarity=0.071  Sum_probs=80.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCC---ceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE---GSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ..+.|+|++|+|||++|+.+++.+.....   ..+...+........ ......                 .....+...
T Consensus        68 ~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~-~g~~~~-----------------~~~~~~~~~  129 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQY-IGHTAP-----------------KTKEVLKRA  129 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSS-TTCHHH-----------------HHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhc-ccccHH-----------------HHHHHHHhc
Confidence            36899999999999999999987644321   112222111110000 000000                 011111111


Q ss_pred             hcCceEEEEEecCC-----------ChhhHHHHhcccCCCCCCcEEEEEeCchhHHH------h--cCCCeEEEecCCCh
Q 020206           81 LTRKKVLIVFDDVN-----------HPRQIEFLIGNLDWFASGSRILITARDKQALI------N--CGVNKIYQIKELVH  141 (329)
Q Consensus        81 ~~~~~~LlvlDdv~-----------~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~------~--~~~~~~~~l~~l~~  141 (329)
                         .+.+|+||+++           .......++..+.....+..+|+||.......      .  ......+.+++++.
T Consensus       130 ---~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~  206 (309)
T 3syl_A          130 ---MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSD  206 (309)
T ss_dssp             ---TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCH
T ss_pred             ---CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCH
Confidence               24599999996           33445555555544445667777775432110      0  01236789999999


Q ss_pred             hhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhc
Q 020206          142 VDALKLLNQCAFGRDHPDASYIELTHEAIKYAQ  174 (329)
Q Consensus       142 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~  174 (329)
                      ++..+++...+....  ....++....+.+.+.
T Consensus       207 ~~~~~il~~~l~~~~--~~~~~~~~~~l~~~~~  237 (309)
T 3syl_A          207 EELFEIAGHMLDDQN--YQMTPEAETALRAYIG  237 (309)
T ss_dssp             HHHHHHHHHHHHHTT--CEECHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHH
Confidence            999999987763221  1223444555655543

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=98.62  E-value=1.4e-06  Score=79.25  Aligned_cols=161  Identities=14%  Similarity=0.093  Sum_probs=88.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+-+.|+||+|+|||+||+.++.....   ..++......         +..    .....     ........+.....
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~---~~~~~v~~~~---------l~~----~~~g~-----~~~~~~~~f~~a~~  225 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANN---STFFSISSSD---------LVS----KWLGE-----SEKLVKNLFQLARE  225 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCS---SEEEEECCC---------------------------CCCTHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCC---CCEEEEeHHH---------HHh----hhcch-----HHHHHHHHHHHHHH
Confidence            367899999999999999999988621   1222211111         111    00010     01112222222233


Q ss_pred             CceEEEEEecCCCh-------------hhHHHHhcccCCC---CCCcEEEEEeCchhHHH---hcCCCeEEEecCCChhh
Q 020206           83 RKKVLIVFDDVNHP-------------RQIEFLIGNLDWF---ASGSRILITARDKQALI---NCGVNKIYQIKELVHVD  143 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~~~---~~~~~ilitsr~~~~~~---~~~~~~~~~l~~l~~~e  143 (329)
                      ..+.+|+||+++..             .....++..+...   ..+..||.||.......   .-.....+.++..+.++
T Consensus       226 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~  305 (444)
T 2zan_A          226 NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHA  305 (444)
T ss_dssp             SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHH
T ss_pred             cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHH
Confidence            56789999999643             1234454444321   23445665665442111   11344577888888888


Q ss_pred             hHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCC-chHHHHHHhh
Q 020206          144 ALKLLNQCAFGRDHPDASYIELTHEAIKYAQGV-PIALKILGRF  186 (329)
Q Consensus       144 ~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~-Plal~~~~~~  186 (329)
                      -..++.........  ...+..+..|++.+.|. +..|..++..
T Consensus       306 r~~il~~~l~~~~~--~l~~~~l~~la~~t~G~sgadl~~l~~~  347 (444)
T 2zan_A          306 RAAMFRLHLGSTQN--SLTEADFQELGRKTDGYSGADISIIVRD  347 (444)
T ss_dssp             HHHHHHHHHTTSCE--ECCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCC--CCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            88888877632211  11235588899999984 5566655543

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.59  E-value=1.8e-06  Score=75.89  Aligned_cols=159  Identities=11%  Similarity=0.124  Sum_probs=90.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcC-CCc-eEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRR-FEG-SYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +.++||+|+||||+++.++..+... +.. .....    ......... .+.....+......              ..+
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~----~~~~~~~~~-ir~~i~~~~~~~~~--------------~~~  109 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN----ASDDRGIDV-VRNQIKDFASTRQI--------------FSK  109 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC----TTSCCSHHH-HHTHHHHHHHBCCS--------------SSC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEc----CcccccHHH-HHHHHHHHHhhccc--------------CCC
Confidence            8999999999999999999976432 111 11111    111112221 22222222111110              112


Q ss_pred             ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      ..-++|+|+++.  ......+...+........+++++.... ... .......+.+.+++.++..+.+...+.....  
T Consensus       110 ~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~--  187 (340)
T 1sxj_C          110 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKL--  187 (340)
T ss_dssp             SCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC--
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCC--
Confidence            356899999853  3334444444433345666777665442 111 1233457899999999999998876622221  


Q ss_pred             CchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          160 ASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                      ...++..+.+++.++|.+..+..+..
T Consensus       188 ~i~~~~~~~i~~~s~G~~r~~~~~l~  213 (340)
T 1sxj_C          188 KLSPNAEKALIELSNGDMRRVLNVLQ  213 (340)
T ss_dssp             CBCHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            13356688899999999986544433

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=98.58  E-value=1.2e-07  Score=75.72  Aligned_cols=27  Identities=33%  Similarity=0.377  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .+.+.|+|++|+|||+|++.+++.+..
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            467899999999999999999997643

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=98.58  E-value=3.9e-07  Score=79.49  Aligned_cols=160  Identities=14%  Similarity=0.160  Sum_probs=87.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ..++.++|++|+|||++++.+++.+..   ..+.+.    .+. .. .+.++..+..+.....               ..
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~~---~~~~i~----~~~-~~-~~~i~~~~~~~~~~~~---------------~~  103 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVNA---DMMFVN----GSD-CK-IDFVRGPLTNFASAAS---------------FD  103 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTTE---EEEEEE----TTT-CC-HHHHHTHHHHHHHBCC---------------CS
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhCC---CEEEEc----ccc-cC-HHHHHHHHHHHHhhcc---------------cC
Confidence            357788899999999999999988632   222222    111 11 2222222222211111               12


Q ss_pred             CceEEEEEecCCChh---hHHHHhcccCCCCCCcEEEEEeCchhHHHh--cCCCeEEEecCCChhhhHHH-------Hhh
Q 020206           83 RKKVLIVFDDVNHPR---QIEFLIGNLDWFASGSRILITARDKQALIN--CGVNKIYQIKELVHVDALKL-------LNQ  150 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~---~~~~l~~~l~~~~~~~~ilitsr~~~~~~~--~~~~~~~~l~~l~~~e~~~l-------l~~  150 (329)
                      +++.+|++||++...   ....+...+.....+..+|+||........  ......+.+++++.++-.++       +..
T Consensus       104 ~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~  183 (324)
T 3u61_B          104 GRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTE  183 (324)
T ss_dssp             SCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence            367899999997543   344444443322346678887766531110  11235789999998874333       222


Q ss_pred             hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                      .+.... ..-...+.+..+++.++|++..+......+
T Consensus       184 ~~~~~~-~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~  219 (324)
T 3u61_B          184 ICKHEG-IAIADMKVVAALVKKNFPDFRKTIGELDSY  219 (324)
T ss_dssp             HHHHHT-CCBSCHHHHHHHHHHTCSCTTHHHHHHHHH
T ss_pred             HHHHcC-CCCCcHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            221111 111112668889999999988655444333

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.58  E-value=7.6e-07  Score=78.59  Aligned_cols=103  Identities=5%  Similarity=0.057  Sum_probs=66.2

Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      .++-++|+|+++.  ......++..+.....+..+|++|.+.. ... .......+.+++++.++..+++...+..... 
T Consensus       133 ~~~~vlilDE~~~L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~-  211 (354)
T 1sxj_E          133 HRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-  211 (354)
T ss_dssp             -CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-
T ss_pred             CCCeEEEEeCccccCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCC-
Confidence            3566999999964  3334445444443345677887776542 111 1234478999999999999999877622111 


Q ss_pred             CCch-HHHHHHHHHHhcCCchHHHHHHhhh
Q 020206          159 DASY-IELTHEAIKYAQGVPIALKILGRFL  187 (329)
Q Consensus       159 ~~~~-~~~~~~i~~~~~g~Plal~~~~~~l  187 (329)
                       ... ++.+..|++.++|++..+..+...+
T Consensus       212 -~~~~~~~l~~i~~~~~G~~r~a~~~l~~~  240 (354)
T 1sxj_E          212 -QLETKDILKRIAQASNGNLRVSLLMLESM  240 (354)
T ss_dssp             -EECCSHHHHHHHHHHTTCHHHHHHHHTHH
T ss_pred             -CCCcHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence             112 3558889999999998776665433

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=98.56  E-value=3e-06  Score=74.89  Aligned_cols=160  Identities=12%  Similarity=0.070  Sum_probs=86.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.|.|+|++|+|||+||+.++.....    .++..+........ ..... ..                ....+.....
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~~~----~~~~i~~~~l~~~~-~g~~~-~~----------------~~~~~~~a~~  174 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQSGA----TFFSISASSLTSKW-VGEGE-KM----------------VRALFAVARC  174 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHTTC----EEEEEEGGGGCCSS-TTHHH-HH----------------HHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCC----eEEEEehHHhhccc-cchHH-HH----------------HHHHHHHHHh
Confidence            467899999999999999999987532    22222121111110 00000 00                1111122223


Q ss_pred             CceEEEEEecCCCh-------------hhHHHHhcccCC----CCCCcEEEEEeCchhHH---HhcCCCeEEEecCCChh
Q 020206           83 RKKVLIVFDDVNHP-------------RQIEFLIGNLDW----FASGSRILITARDKQAL---INCGVNKIYQIKELVHV  142 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~~----~~~~~~ilitsr~~~~~---~~~~~~~~~~l~~l~~~  142 (329)
                      ..+.+|+||+++..             .....++..+..    ...+..+|.||......   ........+.++..+.+
T Consensus       175 ~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~  254 (357)
T 3d8b_A          175 QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEAS  254 (357)
T ss_dssp             TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHH
T ss_pred             cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHH
Confidence            45789999999321             112333333221    12344555566543111   11134457788889999


Q ss_pred             hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcC-CchHHHHHHhh
Q 020206          143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQG-VPIALKILGRF  186 (329)
Q Consensus       143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g-~Plal~~~~~~  186 (329)
                      +-.+++...+......  ..++.+..|++.+.| .+..|..++..
T Consensus       255 ~r~~il~~~~~~~~~~--l~~~~l~~la~~t~G~s~~dl~~l~~~  297 (357)
T 3d8b_A          255 ARKQIVINLMSKEQCC--LSEEEIEQIVQQSDAFSGADMTQLCRE  297 (357)
T ss_dssp             HHHHHHHHHHHTSCBC--CCHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCC--ccHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            9999888766322211  224568889999998 55566665543

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=98.53  E-value=6.3e-06  Score=72.13  Aligned_cols=142  Identities=12%  Similarity=0.096  Sum_probs=80.3

Q ss_pred             CCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhh
Q 020206          130 VNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQME  209 (329)
Q Consensus       130 ~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~  209 (329)
                      ......+++.+.++..+++.+......  ....++.+..|++.+.|.|..+..+...+...    . . ...-.....+.
T Consensus       171 ~~l~~~Ld~~~~~~l~~iL~~~~~~~~--~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~----a-~-~~~~~~It~~~  242 (334)
T 1in4_A          171 FGIILELDFYTVKELKEIIKRAASLMD--VEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDM----L-T-VVKADRINTDI  242 (334)
T ss_dssp             CSEEEECCCCCHHHHHHHHHHHHHHTT--CCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHH----H-H-HHTCSSBCHHH
T ss_pred             cCceeeCCCCCHHHHHHHHHHHHHHcC--CCcCHHHHHHHHHhcCCChHHHHHHHHHHHHH----H-H-HcCCCCcCHHH
Confidence            334678999999999999987752211  12345678999999999998665554433110    0 0 00000111222


Q ss_pred             HHHHHHh---hhcCCChhhHhHHHhhh-cc-cCccChhHHHHHHHhCCcchhhhHH-HHhhccceeeecCCceecc
Q 020206          210 IQEVLKI---SYDGLDDKEKNIFLDIA-CF-LVGEDRDIVTKYLNACEFFATSGIE-VLVDKSLITISEYNKIRMH  279 (329)
Q Consensus       210 ~~~~l~~---~~~~L~~~~~~~l~~ls-~~-~~~~~~~~l~~~~~~~~~~~~~~l~-~L~~~~Ll~~~~~~~~~~H  279 (329)
                      +..++..   .-..++...+..+..+. .| ..+.....++..++.+....++..+ .|...|+|+....|+.-..
T Consensus       243 v~~al~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~t~~~~~~~~l~~~g~i~~~~~gr~~~~  318 (334)
T 1in4_A          243 VLKTMEVLNIDDEGLDEFDRKILKTIIEIYRGGPVGLNALAASLGVEADTLSEVYEPYLLQAGFLARTPRGRIVTE  318 (334)
T ss_dssp             HHHHHHHHTCCTTCCCHHHHHHHHHHHHHSTTCCBCHHHHHHHHTSCHHHHHHHTHHHHHHTTSEEEETTEEEECH
T ss_pred             HHHHHHHhCCCcCCCCHHHHHHHHHHHHHhCCCcchHHHHHHHhCCCcchHHHHHHHHHHHcCCeecccccHHhhH
Confidence            3333322   11245555556655444 23 3346667777666544323333333 7889999999888876544

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.50  E-value=5.5e-06  Score=73.45  Aligned_cols=148  Identities=14%  Similarity=0.166  Sum_probs=82.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcC--ChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG--KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ++=|.++||||+|||.||+.++......|    +.........+.  .....++.                    .+...
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e~~~~f----~~v~~s~l~sk~vGese~~vr~--------------------lF~~A  237 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHHTDCKF----IRVSGAELVQKYIGEGSRMVRE--------------------LFVMA  237 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHHHTCEE----EEEEGGGGSCSSTTHHHHHHHH--------------------HHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHhhCCCc----eEEEhHHhhccccchHHHHHHH--------------------HHHHH
Confidence            35689999999999999999999875432    222222221111  01111111                    12222


Q ss_pred             hcCceEEEEEecCCCh----------------hhHHHHhcccCCC--CCCcEEEEEeCchh-----HHHhcCCCeEEEec
Q 020206           81 LTRKKVLIVFDDVNHP----------------RQIEFLIGNLDWF--ASGSRILITARDKQ-----ALINCGVNKIYQIK  137 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~~----------------~~~~~l~~~l~~~--~~~~~ilitsr~~~-----~~~~~~~~~~~~l~  137 (329)
                      -...+++|++|+++..                ..+..++..+...  ..+..||.||....     ..+..+....+.++
T Consensus       238 r~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~  317 (405)
T 4b4t_J          238 REHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFP  317 (405)
T ss_dssp             HHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECC
T ss_pred             HHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcC
Confidence            3456899999999421                0123333333221  22334555554432     22222455688999


Q ss_pred             CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch
Q 020206          138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      ..+.++-.++|+.....-. ..+.+    +..|++.|.|..-
T Consensus       318 lPd~~~R~~Il~~~~~~~~l~~dvd----l~~lA~~t~G~SG  355 (405)
T 4b4t_J          318 PPSVAARAEILRIHSRKMNLTRGIN----LRKVAEKMNGCSG  355 (405)
T ss_dssp             CCCHHHHHHHHHHHHTTSBCCSSCC----HHHHHHHCCSCCH
T ss_pred             CcCHHHHHHHHHHHhcCCCCCccCC----HHHHHHHCCCCCH
Confidence            8898888888877663322 12212    6778888887643

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=98.49  E-value=7.4e-06  Score=73.28  Aligned_cols=155  Identities=16%  Similarity=0.105  Sum_probs=82.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      +-|.|+|++|+|||+||+.++.....    .++..+.......  ......                    ....+....
T Consensus       149 ~~vLL~GppGtGKT~la~aia~~~~~----~~~~v~~~~l~~~~~g~~~~~--------------------~~~~~~~a~  204 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAAESNA----TFFNISAASLTSKYVGEGEKL--------------------VRALFAVAR  204 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHHTTC----EEEEECSCCC-------CHHH--------------------HHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHhhcC----cEEEeeHHHhhccccchHHHH--------------------HHHHHHHHH
Confidence            67999999999999999999887532    2222212111110  000011                    111122222


Q ss_pred             cCceEEEEEecCCCh-------------hhHHHHhcccC---C-CCCCcEEEEEeCchhHH---HhcCCCeEEEecCCCh
Q 020206           82 TRKKVLIVFDDVNHP-------------RQIEFLIGNLD---W-FASGSRILITARDKQAL---INCGVNKIYQIKELVH  141 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~-------------~~~~~l~~~l~---~-~~~~~~ilitsr~~~~~---~~~~~~~~~~l~~l~~  141 (329)
                      ...+.+|+||+++..             .....++..+.   . ......||.||......   ........+.++..+.
T Consensus       205 ~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~  284 (389)
T 3vfd_A          205 ELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNE  284 (389)
T ss_dssp             HSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCH
T ss_pred             hcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCH
Confidence            335679999999532             11222222221   1 12234555566543211   1113335688899999


Q ss_pred             hhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch-HHHHHH
Q 020206          142 VDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKILG  184 (329)
Q Consensus       142 ~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~  184 (329)
                      ++-.+++...+.....  ...++.+..|+..+.|..- .|..+.
T Consensus       285 ~~r~~il~~~~~~~~~--~l~~~~~~~la~~~~g~~~~~l~~L~  326 (389)
T 3vfd_A          285 ETRLLLLKNLLCKQGS--PLTQKELAQLARMTDGYSGSDLTALA  326 (389)
T ss_dssp             HHHHHHHHHHHTTSCC--CSCHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHH
Confidence            9999999877632221  1234568889999988655 555544

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=98.46  E-value=5.2e-06  Score=71.31  Aligned_cols=157  Identities=18%  Similarity=0.106  Sum_probs=83.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      .+.+.|+|++|+|||++|+.++......|   +.+. .......  .......+                    ..+...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~---~~i~-~~~l~~~~~~~~~~~~~--------------------~~~~~~  109 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSATF---LNIS-AASLTSKYVGDGEKLVR--------------------ALFAVA  109 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTCEE---EEEE-STTTSSSSCSCHHHHHH--------------------HHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCe---EEee-HHHHhhcccchHHHHHH--------------------HHHHHH
Confidence            46789999999999999999998764221   1121 1111100  01111111                    111222


Q ss_pred             hcCceEEEEEecCCCh-------------hhHHHHhccc---CCC--CCCcEEEEEeCchhHHH---hcCCCeEEEecCC
Q 020206           81 LTRKKVLIVFDDVNHP-------------RQIEFLIGNL---DWF--ASGSRILITARDKQALI---NCGVNKIYQIKEL  139 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~~-------------~~~~~l~~~l---~~~--~~~~~ilitsr~~~~~~---~~~~~~~~~l~~l  139 (329)
                      ....+.+|++|+++..             .....++..+   ...  ..+..+|.||.......   .......+.++..
T Consensus       110 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p  189 (297)
T 3b9p_A          110 RHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLP  189 (297)
T ss_dssp             HHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCC
T ss_pred             HHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCc
Confidence            2346789999999432             1112222222   111  12345566666532110   0123356778888


Q ss_pred             ChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCch-HHHHHHh
Q 020206          140 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPI-ALKILGR  185 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pl-al~~~~~  185 (329)
                      +.++-..++.........  ....+.+..+++.+.|++- .|..++.
T Consensus       190 ~~~~r~~il~~~~~~~~~--~~~~~~~~~la~~~~g~~~~~l~~l~~  234 (297)
T 3b9p_A          190 DEQTRELLLNRLLQKQGS--PLDTEALRRLAKITDGYSGSDLTALAK  234 (297)
T ss_dssp             CHHHHHHHHHHHHGGGSC--CSCHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            888888888766522111  1224568889999999886 5655543

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=98.42  E-value=7.7e-06  Score=70.48  Aligned_cols=151  Identities=13%  Similarity=0.109  Sum_probs=83.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.|+|++|+|||+||+.++......   .+.+.          ..++..    ......     .......+.....
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~---~i~v~----------~~~l~~----~~~g~~-----~~~~~~~f~~a~~  106 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANECQAN---FISIK----------GPELLT----MWFGES-----EANVREIFDKARQ  106 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHTTCE---EEEEC----------HHHHHH----HHHTTC-----TTHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHHhCCC---EEEEE----------hHHHHh----hhcCch-----HHHHHHHHHHHHh
Confidence            3568999999999999999999876421   12221          112221    111111     1112223333334


Q ss_pred             CceEEEEEecCCChh----------------hHHHHhcccCCC--CCCcEEEEEeCchhHH-Hh-c---CCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHPR----------------QIEFLIGNLDWF--ASGSRILITARDKQAL-IN-C---GVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~----------------~~~~l~~~l~~~--~~~~~ilitsr~~~~~-~~-~---~~~~~~~l~~l  139 (329)
                      ..+.+|++|+++...                ....++..+...  ..+..||.||...... .. .   .....+.++..
T Consensus       107 ~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p  186 (301)
T 3cf0_A          107 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP  186 (301)
T ss_dssp             TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCC
T ss_pred             cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCc
Confidence            567899999995321                123343333211  2344566666544211 11 1   24467889999


Q ss_pred             ChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCchH
Q 020206          140 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                      +.++-.+++........ .....    ...++..+.|+|-+
T Consensus       187 ~~~~r~~il~~~l~~~~~~~~~~----~~~la~~~~g~sg~  223 (301)
T 3cf0_A          187 DEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSGA  223 (301)
T ss_dssp             CHHHHHHHHHHHHTTSCBCSSCC----HHHHHHTCSSCCHH
T ss_pred             CHHHHHHHHHHHHccCCCCccch----HHHHHHHcCCCCHH
Confidence            99998888877763322 11112    55677778888764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.41  E-value=6.8e-06  Score=73.90  Aligned_cols=148  Identities=15%  Similarity=0.165  Sum_probs=81.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCC--hHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGK--LADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ++=|.++||||+|||.||+.++......    ++.....++..+..  ....+                    ...+...
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e~~~~----~~~v~~s~l~sk~~Gese~~i--------------------r~~F~~A  270 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAATIGAN----FIFSPASGIVDKYIGESARII--------------------REMFAYA  270 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGTCCSSSSHHHHHH--------------------HHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHhCCC----EEEEehhhhccccchHHHHHH--------------------HHHHHHH
Confidence            4668999999999999999999987532    22222222211110  11111                    1122223


Q ss_pred             hcCceEEEEEecCCCh----------------hhHHHHhcccCC--CCCCcEEEEEeCchhHHHh-c----CCCeEEEec
Q 020206           81 LTRKKVLIVFDDVNHP----------------RQIEFLIGNLDW--FASGSRILITARDKQALIN-C----GVNKIYQIK  137 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~~----------------~~~~~l~~~l~~--~~~~~~ilitsr~~~~~~~-~----~~~~~~~l~  137 (329)
                      -...+++|++|+++..                ..+..++..+..  ...+..||.||.....+.. +    .....+.++
T Consensus       271 ~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~  350 (437)
T 4b4t_L          271 KEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIP  350 (437)
T ss_dssp             HHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCC
T ss_pred             HhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecC
Confidence            3457899999999421                012334333321  1234456666654422211 1    133567788


Q ss_pred             CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch
Q 020206          138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      ..+.++-.++|..+...-. ..+.+    +..+++.+.|+.-
T Consensus       351 lPd~~~R~~Il~~~~~~~~~~~d~d----l~~lA~~t~G~sG  388 (437)
T 4b4t_L          351 LPNEAGRLEIFKIHTAKVKKTGEFD----FEAAVKMSDGFNG  388 (437)
T ss_dssp             CCCHHHHHHHHHHHHHTSCBCSCCC----HHHHHHTCCSCCH
T ss_pred             CcCHHHHHHHHHHHhcCCCCCcccC----HHHHHHhCCCCCH
Confidence            8888888888876653322 12222    6778888887543

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=98.36  E-value=2.7e-06  Score=73.33  Aligned_cols=128  Identities=9%  Similarity=0.023  Sum_probs=81.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh---cCCCceEEEeccchhhh-cCChHHHHHHHHHHHhcCCCCCCCCCcchHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS---RRFEGSYFAHNVREAEE-TGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS   78 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~   78 (329)
                      .+...++||+|+|||++|..+++.+.   ..++...++.    ... ...+.+ ++.+...+...+              
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~----~~~~~~~id~-ir~li~~~~~~p--------------   78 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEID----PEGENIGIDD-IRTIKDFLNYSP--------------   78 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEEC----CSSSCBCHHH-HHHHHHHHTSCC--------------
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEc----CCcCCCCHHH-HHHHHHHHhhcc--------------
Confidence            46889999999999999999988632   2234444443    111 122222 233433332211              


Q ss_pred             hhhcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch-hHHHhcCCCeEEEecCCChhhhHHHHhhhh
Q 020206           79 KRLTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK-QALINCGVNKIYQIKELVHVDALKLLNQCA  152 (329)
Q Consensus        79 ~~~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~-~~~~~~~~~~~~~l~~l~~~e~~~ll~~~~  152 (329)
                        ..+++-++|+|+++  +.+....++..+...++...+|++|.+. .+....... .+++++++.++..+++.+..
T Consensus        79 --~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~  152 (305)
T 2gno_A           79 --ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI  152 (305)
T ss_dssp             --SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred             --ccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence              12345689999995  3455666766666556677777766544 333333344 89999999999999998876

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.35  E-value=2.3e-05  Score=70.49  Aligned_cols=147  Identities=15%  Similarity=0.151  Sum_probs=80.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcC--ChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG--KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ++=|.++||+|+|||.||+.++......|    +......+..+.  .....++                    ..+...
T Consensus       243 prGILLyGPPGTGKTlLAkAiA~e~~~~f----i~vs~s~L~sk~vGesek~ir--------------------~lF~~A  298 (467)
T 4b4t_H          243 PKGILLYGPPGTGKTLCARAVANRTDATF----IRVIGSELVQKYVGEGARMVR--------------------ELFEMA  298 (467)
T ss_dssp             CSEEEECSCTTSSHHHHHHHHHHHHTCEE----EEEEGGGGCCCSSSHHHHHHH--------------------HHHHHH
T ss_pred             CCceEeeCCCCCcHHHHHHHHHhccCCCe----EEEEhHHhhcccCCHHHHHHH--------------------HHHHHH
Confidence            46689999999999999999999875432    222122221110  1111111                    122223


Q ss_pred             hcCceEEEEEecCCCh----------------hhHHHHhcccCCC-C-CCcEEEEEeCchh-----HHHhcCCCeEEEec
Q 020206           81 LTRKKVLIVFDDVNHP----------------RQIEFLIGNLDWF-A-SGSRILITARDKQ-----ALINCGVNKIYQIK  137 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~~----------------~~~~~l~~~l~~~-~-~~~~ilitsr~~~-----~~~~~~~~~~~~l~  137 (329)
                      ....+++|++|+++..                ..+..++..+... . .+..+|.||....     ..+..+....+.++
T Consensus       299 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~  378 (467)
T 4b4t_H          299 RTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFS  378 (467)
T ss_dssp             HHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCC
T ss_pred             HhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeC
Confidence            3457899999999421                0122233322211 2 2334455554331     11122455688888


Q ss_pred             CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206          138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P  177 (329)
                      ..+.++-.++|+.....-. ..+..    ...|++.|.|.-
T Consensus       379 lPd~~~R~~Ilk~~l~~~~l~~dvd----l~~LA~~T~GfS  415 (467)
T 4b4t_H          379 LPDLEGRANIFRIHSKSMSVERGIR----WELISRLCPNST  415 (467)
T ss_dssp             CCCHHHHHHHHHHHHTTSCBCSSCC----HHHHHHHCCSCC
T ss_pred             CcCHHHHHHHHHHHhcCCCCCCCCC----HHHHHHHCCCCC
Confidence            8888888888876663322 11112    677888888864

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=98.34  E-value=1.4e-06  Score=70.41  Aligned_cols=35  Identities=29%  Similarity=0.296  Sum_probs=29.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.+.|+|++|+|||+||+.+++........++++.
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~   89 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY   89 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence            68999999999999999999998876555555554

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.34  E-value=1.1e-06  Score=69.71  Aligned_cols=100  Identities=23%  Similarity=0.203  Sum_probs=53.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh-cCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      .+.+.|+|++|+|||||++.++..+. ..-..+.++.          ..++...+.........    .     .+.+.+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~----------~~~~~~~~~~~~~~~~~----~-----~~~~~~   98 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFD----------TKDLIFRLKHLMDEGKD----T-----KFLKTV   98 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEE----------HHHHHHHHHHHHHHTCC----S-----HHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEE----------HHHHHHHHHHHhcCchH----H-----HHHHHh
Confidence            36789999999999999999999875 2222333333          23334444333322211    0     112222


Q ss_pred             cCceEEEEEecCCC----hhhHHHHhcccCCC-CCCcEEEEEeCch
Q 020206           82 TRKKVLIVFDDVNH----PRQIEFLIGNLDWF-ASGSRILITARDK  122 (329)
Q Consensus        82 ~~~~~LlvlDdv~~----~~~~~~l~~~l~~~-~~~~~ilitsr~~  122 (329)
                      . ++-+|||||+..    ......+...+... ..+..+|+||...
T Consensus        99 ~-~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~  143 (180)
T 3ec2_A           99 L-NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYS  143 (180)
T ss_dssp             H-TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred             c-CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence            2 345899999952    11222222222111 2466788888754

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.31  E-value=1e-05  Score=72.59  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ++=|.++||||+|||.||+.+|.....
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~~~~  232 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANSTKA  232 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            455899999999999999999998753

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.29  E-value=7.6e-06  Score=73.53  Aligned_cols=147  Identities=14%  Similarity=0.155  Sum_probs=79.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcC--ChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG--KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ++=|.++||||+|||.||+.++......    ++......+..+.  .....++.+                    +...
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e~~~~----f~~v~~s~l~~~~vGese~~ir~l--------------------F~~A  270 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQTNAT----FLKLAAPQLVQMYIGEGAKLVRDA--------------------FALA  270 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHTCE----EEEEEGGGGCSSCSSHHHHHHHHH--------------------HHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHHhCCC----EEEEehhhhhhcccchHHHHHHHH--------------------HHHH
Confidence            4668999999999999999999987542    2222222221110  111111111                    2222


Q ss_pred             hcCceEEEEEecCCCh------------h----hHHHHhcccCCCC--CCcEEEEEeCchhHHH-hc----CCCeEEEec
Q 020206           81 LTRKKVLIVFDDVNHP------------R----QIEFLIGNLDWFA--SGSRILITARDKQALI-NC----GVNKIYQIK  137 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~~------------~----~~~~l~~~l~~~~--~~~~ilitsr~~~~~~-~~----~~~~~~~l~  137 (329)
                      -...+++|++|+++..            .    .+..++..+....  .+..||.||.....+. .+    +....+.++
T Consensus       271 ~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~  350 (434)
T 4b4t_M          271 KEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFP  350 (434)
T ss_dssp             HHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECC
T ss_pred             HhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeC
Confidence            2346899999998310            0    1233444433222  2334555655442221 11    234577888


Q ss_pred             CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206          138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P  177 (329)
                      ..+.++-.++|+.....-. ..+..    +..|++.+.|+-
T Consensus       351 lPd~~~R~~Il~~~~~~~~~~~dvd----l~~lA~~t~G~s  387 (434)
T 4b4t_M          351 LPSEDSRAQILQIHSRKMTTDDDIN----WQELARSTDEFN  387 (434)
T ss_dssp             CCCHHHHHHHHHHHHHHSCBCSCCC----HHHHHHHCSSCC
T ss_pred             CcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence            8888888888876552211 12212    677888888754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=98.29  E-value=3.8e-06  Score=72.08  Aligned_cols=27  Identities=37%  Similarity=0.582  Sum_probs=24.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .++.+.|+||+|+|||+||+.+++...
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            356789999999999999999999874

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.27  E-value=1.5e-05  Score=71.05  Aligned_cols=147  Identities=14%  Similarity=0.145  Sum_probs=78.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcC--ChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETG--KLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ++=|.++||+|+|||.||+.++......|    +.....++..+.  .....++.+                    +...
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e~~~~f----i~v~~s~l~sk~vGesek~ir~l--------------------F~~A  271 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQTSATF----LRIVGSELIQKYLGDGPRLCRQI--------------------FKVA  271 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHHHTCEE----EEEESGGGCCSSSSHHHHHHHHH--------------------HHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHHhCCCE----EEEEHHHhhhccCchHHHHHHHH--------------------HHHH
Confidence            35689999999999999999999875432    222222221111  111111111                    2222


Q ss_pred             hcCceEEEEEecCCCh----------------hhHHHHhcccCC--CCCCcEEEEEeCchhHHHh-c----CCCeEEEec
Q 020206           81 LTRKKVLIVFDDVNHP----------------RQIEFLIGNLDW--FASGSRILITARDKQALIN-C----GVNKIYQIK  137 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~~----------------~~~~~l~~~l~~--~~~~~~ilitsr~~~~~~~-~----~~~~~~~l~  137 (329)
                      -...+++|++|+++..                ..+..++..+..  ...+..||.||.....+.. +    .....+.++
T Consensus       272 r~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~  351 (437)
T 4b4t_I          272 GENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFE  351 (437)
T ss_dssp             HHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCC
T ss_pred             HhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcC
Confidence            3356899999998421                112233332221  1223445556654432221 1    223467777


Q ss_pred             CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206          138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P  177 (329)
                      ..+.++-.++|......-. ..+..    ++.|++.+.|+-
T Consensus       352 lPd~~~R~~Il~~~l~~~~l~~dvd----l~~LA~~T~GfS  388 (437)
T 4b4t_I          352 NPDLSTKKKILGIHTSKMNLSEDVN----LETLVTTKDDLS  388 (437)
T ss_dssp             CCCHHHHHHHHHHHHTTSCBCSCCC----HHHHHHHCCSCC
T ss_pred             CcCHHHHHHHHHHHhcCCCCCCcCC----HHHHHHhCCCCC
Confidence            7888888888876663322 12222    677888888764

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=98.26  E-value=6.4e-06  Score=71.06  Aligned_cols=26  Identities=31%  Similarity=0.322  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+.+.|+|++|+|||++|+.+++...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            35688999999999999999998874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=98.25  E-value=6.2e-06  Score=65.28  Aligned_cols=27  Identities=37%  Similarity=0.368  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .+.+.|+|++|+|||+||+.+++....
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            456899999999999999999998754

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=98.23  E-value=1.2e-05  Score=73.87  Aligned_cols=154  Identities=15%  Similarity=0.113  Sum_probs=81.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +-|.|+|++|+|||++|+.+++...    ..++..+........ .......                 ....+.....+
T Consensus       239 ~~vLL~GppGtGKT~lAraia~~~~----~~fv~vn~~~l~~~~-~g~~~~~-----------------~~~~f~~A~~~  296 (489)
T 3hu3_A          239 RGILLYGPPGTGKTLIARAVANETG----AFFFLINGPEIMSKL-AGESESN-----------------LRKAFEEAEKN  296 (489)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCS----SEEEEEEHHHHHTSC-TTHHHHH-----------------HHHHHHHHHHT
T ss_pred             CcEEEECcCCCCHHHHHHHHHHHhC----CCEEEEEchHhhhhh-cchhHHH-----------------HHHHHHHHHhc
Confidence            4689999999999999999988753    222222221111110 0000000                 12223333445


Q ss_pred             ceEEEEEecCCCh-------------hhHHHHhcccCC--CCCCcEEEEEeCchhH-HHh----cCCCeEEEecCCChhh
Q 020206           84 KKVLIVFDDVNHP-------------RQIEFLIGNLDW--FASGSRILITARDKQA-LIN----CGVNKIYQIKELVHVD  143 (329)
Q Consensus        84 ~~~LlvlDdv~~~-------------~~~~~l~~~l~~--~~~~~~ilitsr~~~~-~~~----~~~~~~~~l~~l~~~e  143 (329)
                      .+.+|+||+++..             .....++..+..  ...+..+|.||..... ...    ......+.++..+.++
T Consensus       297 ~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e  376 (489)
T 3hu3_A          297 APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG  376 (489)
T ss_dssp             CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred             CCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence            6789999998211             112333333221  1224455556654421 111    1344578899999999


Q ss_pred             hHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCC-chHHHHH
Q 020206          144 ALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGV-PIALKIL  183 (329)
Q Consensus       144 ~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~-Plal~~~  183 (329)
                      -.+++..+..... .....    +..++..+.|+ +..|..+
T Consensus       377 R~~IL~~~~~~~~l~~~~~----l~~la~~t~g~s~~dL~~L  414 (489)
T 3hu3_A          377 RLEILQIHTKNMKLADDVD----LEQVANETHGHVGADLAAL  414 (489)
T ss_dssp             HHHHHHHHTTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcchhh----HHHHHHHccCCcHHHHHHH
Confidence            9999987763222 11111    56677777775 4444444

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.21  E-value=3.3e-05  Score=70.44  Aligned_cols=154  Identities=14%  Similarity=0.113  Sum_probs=82.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +-|.|+|++|+|||+||+.++......|   +.+. ..+...... ..- .                ......+......
T Consensus        50 ~gvLL~GppGtGKT~Laraia~~~~~~f---~~is-~~~~~~~~~-g~~-~----------------~~~r~lf~~A~~~  107 (476)
T 2ce7_A           50 KGILLVGPPGTGKTLLARAVAGEANVPF---FHIS-GSDFVELFV-GVG-A----------------ARVRDLFAQAKAH  107 (476)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHHTCCE---EEEE-GGGTTTCCT-THH-H----------------HHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcCCCe---eeCC-HHHHHHHHh-ccc-H----------------HHHHHHHHHHHhc
Confidence            4588999999999999999998764321   1222 111111100 000 0                0011223333445


Q ss_pred             ceEEEEEecCCCh----------------hhHHHHhcccCC--CCCCcEEEEEeCchhHHH-h----cCCCeEEEecCCC
Q 020206           84 KKVLIVFDDVNHP----------------RQIEFLIGNLDW--FASGSRILITARDKQALI-N----CGVNKIYQIKELV  140 (329)
Q Consensus        84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~--~~~~~~ilitsr~~~~~~-~----~~~~~~~~l~~l~  140 (329)
                      .+++|+||+++..                ..+..++..+..  ...+..||.||....... .    ......+.++..+
T Consensus       108 ~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd  187 (476)
T 2ce7_A          108 APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD  187 (476)
T ss_dssp             CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred             CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCC
Confidence            7899999999431                123333332211  123445666665543221 1    1234578888888


Q ss_pred             hhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc-hHHHHH
Q 020206          141 HVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP-IALKIL  183 (329)
Q Consensus       141 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P-lal~~~  183 (329)
                      .++-.+++........ .++..    ...++..+.|+. .-|..+
T Consensus       188 ~~~R~~Il~~~~~~~~l~~~v~----l~~la~~t~G~sgadL~~l  228 (476)
T 2ce7_A          188 MLGRKKILEIHTRNKPLAEDVN----LEIIAKRTPGFVGADLENL  228 (476)
T ss_dssp             HHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcchhh----HHHHHHhcCCCcHHHHHHH
Confidence            8877788876653221 11111    566888899988 334443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=98.21  E-value=6.1e-06  Score=69.36  Aligned_cols=155  Identities=13%  Similarity=0.058  Sum_probs=79.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +-+.|+|++|+|||+||+.++......   .+.+. ........                 .. .........+......
T Consensus        46 ~~vll~G~~GtGKT~la~~la~~~~~~---~~~i~-~~~~~~~~-----------------~~-~~~~~~~~~~~~a~~~  103 (257)
T 1lv7_A           46 KGVLMVGPPGTGKTLLAKAIAGEAKVP---FFTIS-GSDFVEMF-----------------VG-VGASRVRDMFEQAKKA  103 (257)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHTCC---EEEEC-SCSSTTSC-----------------CC-CCHHHHHHHHHHHHTT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHcCCC---EEEEe-HHHHHHHh-----------------hh-hhHHHHHHHHHHHHHc
Confidence            458899999999999999999876432   12222 11111100                 00 0000011222222334


Q ss_pred             ceEEEEEecCCCh----------------hhHHHHhcccCCC--CCCcEEEEEeCchhHH-Hhc----CCCeEEEecCCC
Q 020206           84 KKVLIVFDDVNHP----------------RQIEFLIGNLDWF--ASGSRILITARDKQAL-INC----GVNKIYQIKELV  140 (329)
Q Consensus        84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~~--~~~~~ilitsr~~~~~-~~~----~~~~~~~l~~l~  140 (329)
                      .+.++++|+++..                ..+..++..+...  ..+..+|.||...... ...    .....+.++..+
T Consensus       104 ~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~  183 (257)
T 1lv7_A          104 APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPD  183 (257)
T ss_dssp             CSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCC
T ss_pred             CCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCC
Confidence            5789999998211                1223333332211  2344556666544211 111    234577788888


Q ss_pred             hhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcC-CchHHHHHH
Q 020206          141 HVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQG-VPIALKILG  184 (329)
Q Consensus       141 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g-~Plal~~~~  184 (329)
                      .++-.+++........ .++..    ...++..+.| ++.-|..+.
T Consensus       184 ~~~r~~il~~~~~~~~l~~~~~----~~~la~~~~G~~~~dl~~l~  225 (257)
T 1lv7_A          184 VRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSGADLANLV  225 (257)
T ss_dssp             HHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCcccc----HHHHHHHcCCCCHHHHHHHH
Confidence            8887888876652211 11111    4556777777 776666543

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=98.19  E-value=4.1e-05  Score=66.07  Aligned_cols=34  Identities=24%  Similarity=0.202  Sum_probs=26.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ..+.|+|++|+|||++|+.+++.........+.+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~   81 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI   81 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence            4789999999999999999999875543333333

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=98.04  E-value=1.2e-05  Score=61.29  Aligned_cols=24  Identities=17%  Similarity=0.173  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .-|.|+|++|+|||++|+.+++..
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHhC
Confidence            347899999999999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.03  E-value=3.6e-06  Score=64.53  Aligned_cols=35  Identities=17%  Similarity=0.353  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..+.|+|++|+|||+|++.++..+...-...+++.
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~   71 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYID   71 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEc
Confidence            57899999999999999999997765322244544

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=97.99  E-value=3.3e-05  Score=70.71  Aligned_cols=146  Identities=13%  Similarity=0.083  Sum_probs=71.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ   77 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l   77 (329)
                      +-+.|+|++|+|||++|+.+++.+....      ...++..+..                .....     .........+
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----------------~~~~g-----~~e~~~~~~~  260 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----------------TKYRG-----EFEDRLKKVM  260 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------------------------CTTHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC----------------ccccc-----hHHHHHHHHH
Confidence            3568999999999999999999875432      1122221111                00000     0011112222


Q ss_pred             HhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhH---HH----hcCCCeEEEecCCChhhhHHHHhh
Q 020206           78 SKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA---LI----NCGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        78 ~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~---~~----~~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                      .......+.+|++|  ...+....+...+.  .....+|.+|.....   ..    .......+.+++++.++..+++..
T Consensus       261 ~~~~~~~~~iLfiD--~~~~a~~~L~~~L~--~g~v~vI~at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~  336 (468)
T 3pxg_A          261 DEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQG  336 (468)
T ss_dssp             HHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHH
T ss_pred             HHHHhcCCeEEEEe--CchhHHHHHHHhhc--CCCEEEEecCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHH
Confidence            22333467899999  22222333333332  234455555543321   00    012335789999999999999987


Q ss_pred             hhcCC--CCCCCchHHHHHHHHHHhc
Q 020206          151 CAFGR--DHPDASYIELTHEAIKYAQ  174 (329)
Q Consensus       151 ~~~~~--~~~~~~~~~~~~~i~~~~~  174 (329)
                      ....-  .......++....++..+.
T Consensus       337 ~~~~~~~~~~~~i~~~al~~l~~~s~  362 (468)
T 3pxg_A          337 LRDRYEAHHRVSITDDAIEAAVKLSD  362 (468)
T ss_dssp             TTTTSGGGSSCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence            65220  0112233455555555543

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=97.99  E-value=0.00029  Score=64.25  Aligned_cols=96  Identities=9%  Similarity=-0.039  Sum_probs=60.3

Q ss_pred             EEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEe---------Cc----h-h-HHHhcCCCeEEEecCCChhhhHHHH
Q 020206           86 VLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITA---------RD----K-Q-ALINCGVNKIYQIKELVHVDALKLL  148 (329)
Q Consensus        86 ~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilits---------r~----~-~-~~~~~~~~~~~~l~~l~~~e~~~ll  148 (329)
                      -++++|+++  +.+....++..+...... .+|+.|         .+    . . ..........+.+++++.++..+++
T Consensus       297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL  375 (456)
T 2c9o_A          297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII  375 (456)
T ss_dssp             CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred             eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence            389999995  456677777776654444 344344         21    1 1 1112234456799999999999999


Q ss_pred             hhhhcCCCCCCCchHHHHHHHHHHh-cCCchHHHHHH
Q 020206          149 NQCAFGRDHPDASYIELTHEAIKYA-QGVPIALKILG  184 (329)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~i~~~~-~g~Plal~~~~  184 (329)
                      ..++....  ....++.+..|+..+ .|.|.....+.
T Consensus       376 ~~~~~~~~--~~~~~~~~~~i~~~a~~g~~r~a~~ll  410 (456)
T 2c9o_A          376 KIRAQTEG--INISEEALNHLGEIGTKTTLRYSVQLL  410 (456)
T ss_dssp             HHHHHHHT--CCBCHHHHHHHHHHHHHSCHHHHHHTH
T ss_pred             HHHHHHhC--CCCCHHHHHHHHHHccCCCHHHHHHHH
Confidence            87762111  113456678888888 89887655444

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.99  E-value=3.6e-05  Score=71.75  Aligned_cols=27  Identities=33%  Similarity=0.405  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .+.+.|+||+|+|||+||+.++.....
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l~~  134 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSLGR  134 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            357899999999999999999988743

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=97.97  E-value=0.00029  Score=60.59  Aligned_cols=25  Identities=28%  Similarity=0.347  Sum_probs=21.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .-|.|+|++|+|||++|+.+++...
T Consensus        26 ~~vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A           26 ATVLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             SCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred             CcEEEECCCCchHHHHHHHHHHhCc
Confidence            3578999999999999999988653

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=97.93  E-value=9.2e-06  Score=68.67  Aligned_cols=26  Identities=27%  Similarity=0.216  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      +-+.|+|++|+|||+||+.+++....
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~   70 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHV   70 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCC
Confidence            34789999999999999999987653

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.93  E-value=3.9e-05  Score=74.67  Aligned_cols=125  Identities=15%  Similarity=0.140  Sum_probs=68.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRK   84 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~   84 (329)
                      .+.++|++|+|||++|+.+++.........+.+. +..........                   .......+..   ..
T Consensus       523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~-~s~~~~~~~~~-------------------~~~l~~~~~~---~~  579 (758)
T 3pxi_A          523 SFIFLGPTGVGKTELARALAESIFGDEESMIRID-MSEYMEKHSTS-------------------GGQLTEKVRR---KP  579 (758)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEE-GGGGCSSCCCC----------------------CHHHHHH---CS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEe-chhcccccccc-------------------cchhhHHHHh---CC
Confidence            5899999999999999999998744333333333 22222211111                   0011122221   23


Q ss_pred             eEEEEEecCCC--hhhHHHHhcccCC-----------CCCCcEEEEEeCchh-----H----HH------hcCCCeEEEe
Q 020206           85 KVLIVFDDVNH--PRQIEFLIGNLDW-----------FASGSRILITARDKQ-----A----LI------NCGVNKIYQI  136 (329)
Q Consensus        85 ~~LlvlDdv~~--~~~~~~l~~~l~~-----------~~~~~~ilitsr~~~-----~----~~------~~~~~~~~~l  136 (329)
                      ..+|+||+++.  .+....++..+..           ...+..+|+||....     .    ..      ..+....+.+
T Consensus       580 ~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~  659 (758)
T 3pxi_A          580 YSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVF  659 (758)
T ss_dssp             SSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEEC
T ss_pred             CeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEec
Confidence            34899999953  3434444433321           123557788887310     0    00      0123368899


Q ss_pred             cCCChhhhHHHHhhhh
Q 020206          137 KELVHVDALKLLNQCA  152 (329)
Q Consensus       137 ~~l~~~e~~~ll~~~~  152 (329)
                      ++++.++...++....
T Consensus       660 ~~l~~~~~~~i~~~~l  675 (758)
T 3pxi_A          660 HSLEKKHLTEIVSLMS  675 (758)
T ss_dssp             C--CHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999888887654

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.92  E-value=0.00021  Score=60.58  Aligned_cols=152  Identities=16%  Similarity=0.119  Sum_probs=76.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK   85 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (329)
                      +.|+|++|+|||||++.++.....   ..+.+. ........ .......                 ....+.......+
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~-~~~~~~~-----------------i~~~~~~~~~~~~  133 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF-VGVGAAR-----------------VRDLFETAKRHAP  133 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHST-TTHHHHH-----------------HHHHHHHHHTSCS
T ss_pred             EEEECCCcChHHHHHHHHHHHcCC---CEEEec-HHHHHHHH-hhHHHHH-----------------HHHHHHHHHhcCC
Confidence            899999999999999999987642   222322 11111000 0000000                 0111222222356


Q ss_pred             EEEEEecCCCh----------------hhHHHHhcccCCCC-CCc-EEEEEeCchhHH-----HhcCCCeEEEecCCChh
Q 020206           86 VLIVFDDVNHP----------------RQIEFLIGNLDWFA-SGS-RILITARDKQAL-----INCGVNKIYQIKELVHV  142 (329)
Q Consensus        86 ~LlvlDdv~~~----------------~~~~~l~~~l~~~~-~~~-~ilitsr~~~~~-----~~~~~~~~~~l~~l~~~  142 (329)
                      .++++||++..                ..+..++..+.... +.. .++.++..+...     ........+.++..+.+
T Consensus       134 ~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~  213 (278)
T 1iy2_A          134 CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVK  213 (278)
T ss_dssp             EEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred             cEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHH
Confidence            79999998311                11233333332211 222 333444443221     11134457888888988


Q ss_pred             hhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc-hHHHHH
Q 020206          143 DALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP-IALKIL  183 (329)
Q Consensus       143 e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P-lal~~~  183 (329)
                      +-.+++........ ..+..    ...++..+.|+. ..|..+
T Consensus       214 ~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~~~dl~~l  252 (278)
T 1iy2_A          214 GREQILRIHARGKPLAEDVD----LALLAKRTPGFVGADLENL  252 (278)
T ss_dssp             HHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCHHHHHHH
T ss_pred             HHHHHHHHHHccCCCCcccC----HHHHHHHcCCCCHHHHHHH
Confidence            88888876653221 11111    556777888776 344433

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.90  E-value=0.0004  Score=57.95  Aligned_cols=147  Identities=15%  Similarity=0.103  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRK   84 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~   84 (329)
                      -+.|+|++|+|||||++.++.....   ..+.+. ........ .......                 ....+.......
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~---~~i~~~-~~~~~~~~-~~~~~~~-----------------i~~~~~~~~~~~  108 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF-VGVGAAR-----------------VRDLFETAKRHA  108 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTC---CEEEEE-HHHHHHSC-TTHHHHH-----------------HHHHHHHHTTSS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC---CEEEee-HHHHHHHH-hhHHHHH-----------------HHHHHHHHHhcC
Confidence            3899999999999999999987642   222222 11111000 0000000                 111122212235


Q ss_pred             eEEEEEecCCCh----------------hhHHHHhcccCCC-CCCcEE-EEEeCchhHHHh-----cCCCeEEEecCCCh
Q 020206           85 KVLIVFDDVNHP----------------RQIEFLIGNLDWF-ASGSRI-LITARDKQALIN-----CGVNKIYQIKELVH  141 (329)
Q Consensus        85 ~~LlvlDdv~~~----------------~~~~~l~~~l~~~-~~~~~i-litsr~~~~~~~-----~~~~~~~~l~~l~~  141 (329)
                      +.++++||++..                .....++..+... .+...+ +.++..+.....     ......+.++..+.
T Consensus       109 ~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~  188 (254)
T 1ixz_A          109 PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV  188 (254)
T ss_dssp             SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCH
T ss_pred             CeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCH
Confidence            689999998311                1122333332211 122233 345544432211     13446788888888


Q ss_pred             hhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206          142 VDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       142 ~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P  177 (329)
                      ++-.+++........ ..+..    ...++..+.|+.
T Consensus       189 ~~r~~il~~~~~~~~~~~~~~----~~~la~~~~G~~  221 (254)
T 1ixz_A          189 KGREQILRIHARGKPLAEDVD----LALLAKRTPGFV  221 (254)
T ss_dssp             HHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCC
T ss_pred             HHHHHHHHHHHcCCCCCcccC----HHHHHHHcCCCC
Confidence            888888876652221 11111    556777777765

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.90  E-value=0.00012  Score=70.74  Aligned_cols=151  Identities=15%  Similarity=0.112  Sum_probs=80.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-|.++||+|+|||+||+.++.....    .++..+..+...+. ..+.-.                 .....+.....
T Consensus       238 p~GILL~GPPGTGKT~LAraiA~elg~----~~~~v~~~~l~sk~-~gese~-----------------~lr~lF~~A~~  295 (806)
T 3cf2_A          238 PRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKL-AGESES-----------------NLRKAFEEAEK  295 (806)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHTTTTC----EEEEEEHHHHHSSC-TTHHHH-----------------HHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC----eEEEEEhHHhhccc-chHHHH-----------------HHHHHHHHHHH
Confidence            467899999999999999999876542    22322221111100 000000                 02222333344


Q ss_pred             CceEEEEEecCCCh-------------hhHHHHhcccCCCC--CCcEEEEEeCchhHH-Hh----cCCCeEEEecCCChh
Q 020206           83 RKKVLIVFDDVNHP-------------RQIEFLIGNLDWFA--SGSRILITARDKQAL-IN----CGVNKIYQIKELVHV  142 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~~~~--~~~~ilitsr~~~~~-~~----~~~~~~~~l~~l~~~  142 (329)
                      ..+++|+||+++..             .....++..+....  .+..||.||...... ..    ......+.++..+.+
T Consensus       296 ~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~  375 (806)
T 3cf2_A          296 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT  375 (806)
T ss_dssp             SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHH
T ss_pred             cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHH
Confidence            67899999998321             11223332222111  233444455443211 11    134467888888888


Q ss_pred             hhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCchH
Q 020206          143 DALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       143 e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                      +=.++++....... ..+..    +..|+..+.|+.-+
T Consensus       376 ~R~~IL~~~l~~~~~~~dvd----l~~lA~~T~Gfsga  409 (806)
T 3cf2_A          376 GRLEILQIHTKNMKLADDVD----LEQVANETHGHVGA  409 (806)
T ss_dssp             HHHHHHHHTCSSSEECTTCC----HHHHHHHCCSCCHH
T ss_pred             HHHHHHHHHhcCCCCCcccC----HHHHHHhcCCCCHH
Confidence            88888876653221 11222    77788898887543

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=97.90  E-value=1.2e-05  Score=69.51  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=28.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh-cCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~   38 (329)
                      .+.+.|+|++|+|||+||..+++... .....+.++.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~  188 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH  188 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            46789999999999999999999876 5544455554

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=97.89  E-value=5.9e-05  Score=67.06  Aligned_cols=25  Identities=24%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.+.++|++|+|||++|+.+++...
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l~   97 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHLD   97 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999998773

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=97.88  E-value=5.4e-05  Score=63.80  Aligned_cols=25  Identities=32%  Similarity=0.251  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .-|.|+|++|+|||++|+.+++...
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcC
Confidence            4578999999999999999988654

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.87  E-value=0.00026  Score=59.92  Aligned_cols=125  Identities=17%  Similarity=0.168  Sum_probs=65.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCce
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRKK   85 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (329)
                      +.|+|++|+|||||++.++.....   ..+.+. ....... ...+....+                 ...+.......+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~---~~i~i~-g~~l~~~-~~~~~~~~i-----------------~~vf~~a~~~~p  104 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGL---NFISVK-GPELLNM-YVGESERAV-----------------RQVFQRAKNSAP  104 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTC---EEEEEE-TTTTCSS-TTHHHHHHH-----------------HHHHHHHHHTCS
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCC---CEEEEE-cHHHHhh-hhhHHHHHH-----------------HHHHHHHHhcCC
Confidence            899999999999999999987543   223332 1111111 111111111                 011111112357


Q ss_pred             EEEEEecCCCh-------------hhHHHHhcccCCC-CC-CcEEEEEeCchhHHH-----hcCCCeEEEecCCChhhhH
Q 020206           86 VLIVFDDVNHP-------------RQIEFLIGNLDWF-AS-GSRILITARDKQALI-----NCGVNKIYQIKELVHVDAL  145 (329)
Q Consensus        86 ~LlvlDdv~~~-------------~~~~~l~~~l~~~-~~-~~~ilitsr~~~~~~-----~~~~~~~~~l~~l~~~e~~  145 (329)
                      +++++|+++..             .....++..+... .+ ...++.+|..+....     .......+.++..+.++-.
T Consensus       105 ~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~  184 (274)
T 2x8a_A          105 CVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRL  184 (274)
T ss_dssp             EEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHH
T ss_pred             CeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHH
Confidence            89999998431             1122222222211 12 233444555443221     1245567889999998888


Q ss_pred             HHHhhhh
Q 020206          146 KLLNQCA  152 (329)
Q Consensus       146 ~ll~~~~  152 (329)
                      ++++...
T Consensus       185 ~il~~~~  191 (274)
T 2x8a_A          185 AILKTIT  191 (274)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            8887765

>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*

Probab=97.83  E-value=0.00065  Score=59.44  Aligned_cols=157  Identities=7%  Similarity=-0.075  Sum_probs=99.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh-cCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      .++..++|+.|.||++.+..+++.+. ..+.....+.    ......+.++...+...                    -+
T Consensus        18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~--------------------pl   73 (343)
T 1jr3_D           18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS----IDPNTDWNAIFSLCQAM--------------------SL   73 (343)
T ss_dssp             CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE----CCTTCCHHHHHHHHHHH--------------------HH
T ss_pred             CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE----ecCCCCHHHHHHHhcCc--------------------CC
Confidence            57899999999999999999988754 3332211111    11124444444332111                    12


Q ss_pred             cCceEEEEEecCCC---hhhHHHHhcccCCCCCCcEEEEEeCc-------hhHHHh-cCCCeEEEecCCChhhhHHHHhh
Q 020206           82 TRKKVLIVFDDVNH---PRQIEFLIGNLDWFASGSRILITARD-------KQALIN-CGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        82 ~~~~~LlvlDdv~~---~~~~~~l~~~l~~~~~~~~ilitsr~-------~~~~~~-~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                      -+.+-++|+|+++.   .+....+...+...+++..+|+++..       ..+... ......++..+++.++...++..
T Consensus        74 f~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~~~l~~~l~~  153 (343)
T 1jr3_D           74 FASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAA  153 (343)
T ss_dssp             CCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCTTHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCHHHHHHHHHH
Confidence            23455889999854   34566666666555567777766543       122333 34557899999999999999988


Q ss_pred             hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHh
Q 020206          151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKILGR  185 (329)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~  185 (329)
                      .+....  -...++.+..|++.++|++..+.....
T Consensus       154 ~~~~~g--~~i~~~a~~~l~~~~~gdl~~~~~ele  186 (343)
T 1jr3_D          154 RAKQLN--LELDDAANQVLCYCYEGNLLALAQALE  186 (343)
T ss_dssp             HHHHTT--CEECHHHHHHHHHSSTTCHHHHHHHHH
T ss_pred             HHHHcC--CCCCHHHHHHHHHHhchHHHHHHHHHH
Confidence            763222  124457789999999999988876443

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.80  E-value=5.8e-05  Score=74.41  Aligned_cols=150  Identities=13%  Similarity=0.061  Sum_probs=72.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhh----cCChHHHHHHHHHHHhcCCCCCCCCCcc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEE----TGKLADLRKELLSTLLNDGNMNKFPNIG   73 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (329)
                      +-+.|+|++|+|||++|+.+++.+....      ...++..+......    .......+                    
T Consensus       192 ~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l--------------------  251 (854)
T 1qvr_A          192 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERL--------------------  251 (854)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHH--------------------
T ss_pred             CceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHH--------------------
Confidence            4578999999999999999999874321      22233322211100    00011111                    


Q ss_pred             hHHHHhhhc-CceEEEEEecCCChh---------h-HHHHhcccCCCCCCcEEEEEeCchhHH-----Hh-cCCCeEEEe
Q 020206           74 LNFQSKRLT-RKKVLIVFDDVNHPR---------Q-IEFLIGNLDWFASGSRILITARDKQAL-----IN-CGVNKIYQI  136 (329)
Q Consensus        74 ~~~l~~~~~-~~~~LlvlDdv~~~~---------~-~~~l~~~l~~~~~~~~ilitsr~~~~~-----~~-~~~~~~~~l  136 (329)
                      ...+..... +++.+|++|+++...         . ...+...+.  ..+..+|.+|......     .. ......+.+
T Consensus       252 ~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~--~~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l  329 (854)
T 1qvr_A          252 KAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALERRFQPVYV  329 (854)
T ss_dssp             HHHHHHHHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEE
T ss_pred             HHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh--CCCeEEEEecCchHHhhhccCHHHHhCCceEEe
Confidence            111111112 367899999995421         1 111222221  2344455555443221     11 122345889


Q ss_pred             cCCChhhhHHHHhhhhcC--CCCCCCchHHHHHHHHHHhcC
Q 020206          137 KELVHVDALKLLNQCAFG--RDHPDASYIELTHEAIKYAQG  175 (329)
Q Consensus       137 ~~l~~~e~~~ll~~~~~~--~~~~~~~~~~~~~~i~~~~~g  175 (329)
                      ++++.++..++++.....  ........++.+..+++.+.|
T Consensus       330 ~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r  370 (854)
T 1qvr_A          330 DEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHR  370 (854)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhh
Confidence            999999999999754310  011112234556666665543

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.78  E-value=0.00028  Score=64.74  Aligned_cols=152  Identities=16%  Similarity=0.109  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh-cC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL-TR   83 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~-~~   83 (329)
                      -+.|+|++|+|||+|++.++.....   ..+.+. ...+.... .......                  ...+.+.. ..
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~---~~i~i~-g~~~~~~~-~g~~~~~------------------v~~lfq~a~~~  122 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARV---PFITAS-GSDFVEMF-VGVGAAR------------------VRDLFETAKRH  122 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTC---CEEEEE-GGGGTSSC-TTHHHHH------------------HHHHTTTSSSS
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCC---CEEEEe-hhHHHHhh-hhhHHHH------------------HHHHHHHHHhc
Confidence            4899999999999999999987642   222222 21111110 0000000                  00111111 12


Q ss_pred             ceEEEEEecCCCh----------------hhHHHHhcccCCCC-C-CcEEEEEeCchhHHHh-----cCCCeEEEecCCC
Q 020206           84 KKVLIVFDDVNHP----------------RQIEFLIGNLDWFA-S-GSRILITARDKQALIN-----CGVNKIYQIKELV  140 (329)
Q Consensus        84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~~~-~-~~~ilitsr~~~~~~~-----~~~~~~~~l~~l~  140 (329)
                      .+.++++|+++..                ..+..++..+.... + ...++.+|..+..+..     ......+.++..+
T Consensus       123 ~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd  202 (499)
T 2dhr_A          123 APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD  202 (499)
T ss_dssp             SSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCC
T ss_pred             CCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCC
Confidence            4679999998321                12333443332211 2 2334445544432211     1234578888888


Q ss_pred             hhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc-hHHHHH
Q 020206          141 HVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP-IALKIL  183 (329)
Q Consensus       141 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P-lal~~~  183 (329)
                      .++-.+++........ .++..    ...++..+.|+. .-|..+
T Consensus       203 ~~~R~~IL~~~~~~~~l~~dv~----l~~lA~~t~G~~gadL~~l  243 (499)
T 2dhr_A          203 VKGREQILRIHARGKPLAEDVD----LALLAKRTPGFVGADLENL  243 (499)
T ss_dssp             HHHHHHHHHHTTSSSCCCCSST----THHHHTTSCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCChHHH----HHHHHHhcCCCCHHHHHHH
Confidence            8888888876652211 11111    566788888887 444433

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=97.75  E-value=0.00013  Score=71.06  Aligned_cols=124  Identities=13%  Similarity=0.068  Sum_probs=64.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC------CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF------EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQ   77 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l   77 (329)
                      +-+.|+|++|+|||++|+.+++.+....      ...++..+.                    +..... .........+
T Consensus       202 ~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~--------------------g~~~~G-~~e~~l~~~~  260 (758)
T 3pxi_A          202 NNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM--------------------GTKYRG-EFEDRLKKVM  260 (758)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------------------------CTTHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc--------------------cccccc-hHHHHHHHHH
Confidence            4578999999999999999999874321      112221111                    000000 1111122233


Q ss_pred             HhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHH--h-----cCCCeEEEecCCChhhhHHHHhh
Q 020206           78 SKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALI--N-----CGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        78 ~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~--~-----~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                      .......+.+|++|  ...+....+...+.  .....+|.+|.......  .     ....+.+.++.++.++..+++..
T Consensus       261 ~~~~~~~~~iLfiD--~~~~~~~~L~~~l~--~~~v~~I~at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~  336 (758)
T 3pxi_A          261 DEIRQAGNIILFID--AAIDASNILKPSLA--RGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQG  336 (758)
T ss_dssp             HHHHTCCCCEEEEC--C--------CCCTT--SSSCEEEEECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHH
T ss_pred             HHHHhcCCEEEEEc--CchhHHHHHHHHHh--cCCEEEEeCCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHH
Confidence            33334567899999  22222333333332  23455666555432100  0     11335789999999999999986


Q ss_pred             hh
Q 020206          151 CA  152 (329)
Q Consensus       151 ~~  152 (329)
                      ..
T Consensus       337 ~~  338 (758)
T 3pxi_A          337 LR  338 (758)
T ss_dssp             TT
T ss_pred             HH
Confidence            54

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.66  E-value=0.00026  Score=68.85  Aligned_cols=128  Identities=16%  Similarity=0.146  Sum_probs=67.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEeccchhhh----cCChHHHHHHHHHHHhcCCCCCCCCCcc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAHNVREAEE----TGKLADLRKELLSTLLNDGNMNKFPNIG   73 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~   73 (329)
                      .-+.|+|++|+|||++|+.+++.+...      ....++..+......    ...+...++                   
T Consensus       208 ~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~-------------------  268 (758)
T 1r6b_X          208 NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFK-------------------  268 (758)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHH-------------------
T ss_pred             CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHH-------------------
Confidence            457899999999999999999876432      122233222111100    001111111                   


Q ss_pred             hHHHHhhhcCceEEEEEecCCCh----------hhHHHHhcccCCCCCCcEEEEEeCchhHHHh-------cCCCeEEEe
Q 020206           74 LNFQSKRLTRKKVLIVFDDVNHP----------RQIEFLIGNLDWFASGSRILITARDKQALIN-------CGVNKIYQI  136 (329)
Q Consensus        74 ~~~l~~~~~~~~~LlvlDdv~~~----------~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~-------~~~~~~~~l  136 (329)
                       ..+......++.+|++|+++..          .....++..+.. ..+..+|.+|........       ......+.+
T Consensus       269 -~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~-~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v  346 (758)
T 1r6b_X          269 -ALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDI  346 (758)
T ss_dssp             -HHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEEC
T ss_pred             -HHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh-CCCeEEEEEeCchHHhhhhhcCHHHHhCceEEEc
Confidence             1122222235689999999633          223333333322 234456665554322111       112246889


Q ss_pred             cCCChhhhHHHHhhhh
Q 020206          137 KELVHVDALKLLNQCA  152 (329)
Q Consensus       137 ~~l~~~e~~~ll~~~~  152 (329)
                      +.++.++..+++....
T Consensus       347 ~~p~~~e~~~il~~l~  362 (758)
T 1r6b_X          347 TEPSIEETVQIINGLK  362 (758)
T ss_dssp             CCCCHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHH
Confidence            9999999988887654

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.60  E-value=2.7e-05  Score=59.14  Aligned_cols=24  Identities=17%  Similarity=0.094  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +-|.|+|++|+|||++|+.+++..
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CcEEEECCCCccHHHHHHHHHHhC
Confidence            447899999999999999886643

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=97.60  E-value=0.00033  Score=56.97  Aligned_cols=27  Identities=19%  Similarity=0.190  Sum_probs=24.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++.++|+|.|+||+||||.|+.+++.+
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998876

>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*

Probab=97.57  E-value=0.00012  Score=58.07  Aligned_cols=118  Identities=14%  Similarity=0.080  Sum_probs=60.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhc--CCCCCCCCC---------cc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLN--DGNMNKFPN---------IG   73 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~---------~~   73 (329)
                      .|.|++..|.||||.|.-.+-+...+-..+.++....+. .......++..+.-.+..  .+..-...+         ..
T Consensus        30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~-~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~  108 (196)
T 1g5t_A           30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGT-WPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV  108 (196)
T ss_dssp             CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCS-SCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCC-CCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence            567777777999999999998876665556655433221 112222333322000000  000000000         02


Q ss_pred             hHHHHhhhcCc-eEEEEEecCC-----ChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206           74 LNFQSKRLTRK-KVLIVFDDVN-----HPRQIEFLIGNLDWFASGSRILITARDKQ  123 (329)
Q Consensus        74 ~~~l~~~~~~~-~~LlvlDdv~-----~~~~~~~l~~~l~~~~~~~~ilitsr~~~  123 (329)
                      .....+.+... -=|||||++.     ..-..+.++..+........+|+|+|..+
T Consensus       109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap  164 (196)
T 1g5t_A          109 WQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH  164 (196)
T ss_dssp             HHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC
T ss_pred             HHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCc
Confidence            22333344333 3499999982     22223334444443456778999999874

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=97.57  E-value=0.00021  Score=69.51  Aligned_cols=23  Identities=26%  Similarity=0.323  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.++|++|+|||++|+.+++..
T Consensus       490 ~~ll~G~~GtGKT~la~~la~~l  512 (758)
T 1r6b_X          490 SFLFAGPTGVGKTEVTVQLSKAL  512 (758)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Confidence            68999999999999999999987

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=97.53  E-value=0.00015  Score=58.52  Aligned_cols=23  Identities=26%  Similarity=0.219  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +|+|.|+||+||||.|+.+++.+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999999876

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=97.53  E-value=0.00016  Score=57.32  Aligned_cols=36  Identities=17%  Similarity=-0.141  Sum_probs=26.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ..++++++|++|+||||++.+.+.++...-..+.++
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~   37 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF   37 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            346899999999999999988888765443333333

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.50  E-value=0.00033  Score=56.96  Aligned_cols=33  Identities=15%  Similarity=0.005  Sum_probs=25.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|++|+|||||+.+++.  . .-..++|+.
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~--~-~~~~v~~i~   52 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGL--L-SGKKVAYVD   52 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHH--H-HCSEEEEEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH--H-cCCcEEEEE
Confidence            35789999999999999999998  2 224456655

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=97.47  E-value=0.00037  Score=61.52  Aligned_cols=25  Identities=24%  Similarity=0.343  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.+.++|++|+|||++|+.+++...
T Consensus        52 ~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            5689999999999999999998873

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=97.46  E-value=4.8e-05  Score=62.15  Aligned_cols=34  Identities=18%  Similarity=-0.185  Sum_probs=28.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .+++++|++|+||||++.+++.++..+...+..+
T Consensus        13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~   46 (223)
T 2b8t_A           13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF   46 (223)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence            5889999999999999999999887665555554

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.45  E-value=7.6e-05  Score=58.68  Aligned_cols=27  Identities=22%  Similarity=0.223  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..++|+|+|++|+||||+++.+++.+.
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~   28 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence            357899999999999999999988764

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=97.42  E-value=0.00029  Score=68.15  Aligned_cols=148  Identities=15%  Similarity=0.191  Sum_probs=62.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      +-|.++||+|+|||.+|+.++.....    .++...         ..++    +.......     .......+...-..
T Consensus       512 ~gvLl~GPPGtGKT~lAkaiA~e~~~----~f~~v~---------~~~l----~s~~vGes-----e~~vr~lF~~Ar~~  569 (806)
T 3cf2_A          512 KGVLFYGPPGCGKTLLAKAIANECQA----NFISIK---------GPEL----LTMWFGES-----EANVREIFDKARQA  569 (806)
T ss_dssp             SCCEEESSTTSSHHHHHHHHHHTTTC----EEEECC---------HHHH----HTTTCSSC-----HHHHHHHHHHHHTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHhCC----ceEEec---------cchh----hccccchH-----HHHHHHHHHHHHHc
Confidence            45789999999999999999887542    222221         1111    11111110     00122223333345


Q ss_pred             ceEEEEEecCCCh----------------hhHHHHhcccCCCCC-CcEEEE-EeCch-----hHHHhcCCCeEEEecCCC
Q 020206           84 KKVLIVFDDVNHP----------------RQIEFLIGNLDWFAS-GSRILI-TARDK-----QALINCGVNKIYQIKELV  140 (329)
Q Consensus        84 ~~~LlvlDdv~~~----------------~~~~~l~~~l~~~~~-~~~ili-tsr~~-----~~~~~~~~~~~~~l~~l~  140 (329)
                      .+++|+||+++..                .....|+..+..... ...++| ||..+     ...+..+....+.++..+
T Consensus       570 ~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd  649 (806)
T 3cf2_A          570 APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD  649 (806)
T ss_dssp             CSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC----
T ss_pred             CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcC
Confidence            6899999998321                013334433332222 223444 33322     122212345677887777


Q ss_pred             hhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCc
Q 020206          141 HVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVP  177 (329)
Q Consensus       141 ~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~P  177 (329)
                      .++-.++|+....... ..+.+    +..|++.+.|+.
T Consensus       650 ~~~R~~il~~~l~~~~~~~~~d----l~~la~~t~g~S  683 (806)
T 3cf2_A          650 EKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFS  683 (806)
T ss_dssp             -CHHHHTTTTTSSCC--CCC------------------
T ss_pred             HHHHHHHHHHHhcCCCCCCCCC----HHHHHHhCCCCC
Confidence            7777777766652221 11111    566777776643

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=97.41  E-value=0.00092  Score=65.88  Aligned_cols=27  Identities=26%  Similarity=0.326  Sum_probs=23.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+.|+|++|+|||++|+.+++.....
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~  615 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLFDT  615 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence            368999999999999999999987543

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=97.40  E-value=5.9e-05  Score=64.71  Aligned_cols=23  Identities=26%  Similarity=0.250  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      +++.|+|++|+|||+||.+++..
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            56789999999999999999886

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.36  E-value=7.1e-05  Score=59.33  Aligned_cols=29  Identities=24%  Similarity=0.454  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      .|.|+|+||+|+|||||++.+.+...+.|
T Consensus         1 ~RpIVi~GPSG~GK~Tl~~~L~~~~~~~~   29 (186)
T 1ex7_A            1 SRPIVISGPSGTGKSTLLKKLFAEYPDSF   29 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence            37799999999999999999987754443

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=97.35  E-value=0.00098  Score=61.21  Aligned_cols=25  Identities=20%  Similarity=0.181  Sum_probs=21.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .-|.|+|++|+|||+||+.+++...
T Consensus        42 ~~VLL~GpPGtGKT~LAraLa~~l~   66 (500)
T 3nbx_X           42 ESVFLLGPPGIAKSLIARRLKFAFQ   66 (500)
T ss_dssp             CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred             CeeEeecCchHHHHHHHHHHHHHHh
Confidence            3578999999999999999988664

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.26  E-value=0.00018  Score=56.02  Aligned_cols=25  Identities=12%  Similarity=0.074  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++|+|.|++|+||||+++.+++.+.
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4799999999999999999988764

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.23  E-value=0.00073  Score=59.15  Aligned_cols=36  Identities=19%  Similarity=0.159  Sum_probs=29.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|+|++|+|||||+.+++......-..++|+.
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId   96 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFID   96 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence            368999999999999999999988765545566765

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.21  E-value=0.00022  Score=56.42  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.|+|+|++|+||||+++.+++.+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999876

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=97.20  E-value=0.00061  Score=59.80  Aligned_cols=109  Identities=14%  Similarity=0.095  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceE-EEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY-FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+++|+|+.|+|||||.+.++..+.......+ .+.+..+.......         ....+.............+...+.
T Consensus       124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~---------~~v~q~~~~~~~~~~~~~La~aL~  194 (356)
T 3jvv_A          124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKK---------CLVNQREVHRDTLGFSEALRSALR  194 (356)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccc---------cceeeeeeccccCCHHHHHHHHhh
Confidence            48999999999999999999887654322332 22211111000000         000000000000113456777788


Q ss_pred             CceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhH
Q 020206           83 RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQA  124 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~  124 (329)
                      ..+=+|++|++.+.+.++.++...   ..|..+++|+.....
T Consensus       195 ~~PdvillDEp~d~e~~~~~~~~~---~~G~~vl~t~H~~~~  233 (356)
T 3jvv_A          195 EDPDIILVGEMRDLETIRLALTAA---ETGHLVFGTLHTTSA  233 (356)
T ss_dssp             SCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEESCSSH
T ss_pred             hCcCEEecCCCCCHHHHHHHHHHH---hcCCEEEEEEccChH
Confidence            888899999998777666554442   235568888876543

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.19  E-value=0.00042  Score=55.01  Aligned_cols=27  Identities=22%  Similarity=0.233  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ++|+|.|++|+||||+++.+++.+...
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~   28 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQ   28 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            479999999999999999999987643

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.18  E-value=0.00024  Score=56.32  Aligned_cols=28  Identities=18%  Similarity=0.305  Sum_probs=24.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ...+|+|.|++|+||||+++.+++.+..
T Consensus         2 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~   29 (192)
T 1kht_A            2 KNKVVVVTGVPGVGSTTSSQLAMDNLRK   29 (192)
T ss_dssp             -CCEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3568999999999999999999998764

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.15  E-value=0.00026  Score=55.59  Aligned_cols=23  Identities=26%  Similarity=0.310  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      +.+|+|.|++|+||||+++.+++
T Consensus         2 ~~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            2 KKIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHh
Confidence            35899999999999999999987

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.14  E-value=0.00032  Score=55.73  Aligned_cols=26  Identities=19%  Similarity=0.268  Sum_probs=23.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...+|+|.|++|+||||+++.+++.+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            35789999999999999999998876

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.13  E-value=0.00031  Score=55.89  Aligned_cols=27  Identities=22%  Similarity=0.242  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |.+.+|+|.|++|+||||+++.+++.+
T Consensus         1 M~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            1 MKPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             --CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            346789999999999999999998875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.12  E-value=0.00029  Score=55.46  Aligned_cols=25  Identities=32%  Similarity=0.360  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.|+|+|++|+||||+++.+++.+
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998876

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.11  E-value=0.0014  Score=56.31  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=28.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ..++.|+|++|+||||++..++..+...-..+.++
T Consensus       104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv  138 (306)
T 1vma_A          104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLA  138 (306)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEE
Confidence            56899999999999999999999876553344443

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.10  E-value=0.00066  Score=54.74  Aligned_cols=30  Identities=23%  Similarity=0.240  Sum_probs=25.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      ...+|+|.|++|+||||+++.+++.+....
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g   32 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIELKR   32 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHTTTS
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhhcC
Confidence            357899999999999999999999876543

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.09  E-value=0.00036  Score=55.95  Aligned_cols=25  Identities=32%  Similarity=0.482  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.|+|+|++|+||||+++.+++.+
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            4589999999999999999999876

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.08  E-value=0.00067  Score=53.65  Aligned_cols=28  Identities=25%  Similarity=0.340  Sum_probs=24.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+|+|.|++|+||||+++.++..+...
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~   40 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADLLQKE   40 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            4689999999999999999999987654

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.07  E-value=0.00039  Score=55.36  Aligned_cols=26  Identities=23%  Similarity=0.179  Sum_probs=23.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++|+|.|++|+||||+++.+++.+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999998876

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.05  E-value=0.00068  Score=54.84  Aligned_cols=29  Identities=10%  Similarity=0.144  Sum_probs=25.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      ..+|+|.|++|+||||+++.+++.+...+
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~   37 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALCAAG   37 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            56899999999999999999999876543

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.05  E-value=0.00034  Score=54.54  Aligned_cols=22  Identities=27%  Similarity=0.353  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+|+|.|++|+||||+++.+ +.
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~   23 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KE   23 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HH
T ss_pred             cEEEEECCCCCCHHHHHHHH-HH
Confidence            57999999999999999998 44

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=97.04  E-value=0.00076  Score=54.08  Aligned_cols=26  Identities=27%  Similarity=0.496  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|.|++|+||||+++.++..+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999999876

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.04  E-value=0.00034  Score=56.18  Aligned_cols=25  Identities=20%  Similarity=0.408  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++|+|+|++|+||||+++.+++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998876

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.00  E-value=0.00036  Score=54.44  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|+|++|+||||+++.++..+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999988753

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=97.00  E-value=0.0028  Score=50.74  Aligned_cols=23  Identities=26%  Similarity=0.146  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++.|+|++|+|||++|.......
T Consensus         7 i~l~tG~pGsGKT~~a~~~~~~~   29 (199)
T 2r2a_A            7 ICLITGTPGSGKTLKMVSMMAND   29 (199)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999998876543

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.99  E-value=0.0008  Score=52.27  Aligned_cols=29  Identities=17%  Similarity=0.212  Sum_probs=25.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+++.|.|++|+|||||+..++..+..+
T Consensus         3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            3 AMNVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            35789999999999999999999987654

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.99  E-value=0.00048  Score=57.57  Aligned_cols=25  Identities=24%  Similarity=0.138  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++++|.|++|+|||||++.+++.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            5789999999999999999998763

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=96.98  E-value=0.00044  Score=54.52  Aligned_cols=26  Identities=27%  Similarity=0.426  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .++++|+||+|+|||||++.++....
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46899999999999999999988654

>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*

Probab=96.97  E-value=0.0035  Score=58.73  Aligned_cols=35  Identities=14%  Similarity=-0.041  Sum_probs=27.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .++++|+|++|+||||++..++..+......+...
T Consensus       204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~  238 (574)
T 3e1s_A          204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC  238 (574)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence            47899999999999999999998776554444443

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.95  E-value=0.00052  Score=54.46  Aligned_cols=24  Identities=33%  Similarity=0.292  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|++|+|||||++.++..
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc
Confidence            468999999999999999999765

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.95  E-value=0.0021  Score=56.17  Aligned_cols=36  Identities=14%  Similarity=0.049  Sum_probs=27.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc------CCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~   38 (329)
                      ..++.|+|++|+|||+|+.+++.....      .-..++|+.
T Consensus       122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~  163 (343)
T 1v5w_A          122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID  163 (343)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence            368899999999999999999987533      234566665

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.95  E-value=0.00047  Score=53.99  Aligned_cols=25  Identities=24%  Similarity=0.381  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.|+|.|++|+||||+++.+++.+.
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999998764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.94  E-value=0.00045  Score=54.53  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++|+|+|++|+||||+++.+++.+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            5699999999999999999988763

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=96.94  E-value=0.00057  Score=54.56  Aligned_cols=27  Identities=30%  Similarity=0.455  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..++++|.||+|+|||||++.++..+.
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            457899999999999999999987754

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=96.94  E-value=0.00055  Score=55.32  Aligned_cols=27  Identities=26%  Similarity=0.336  Sum_probs=23.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..++++|.||+|+|||||++.++..+.
T Consensus         7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            7 RGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            357899999999999999999987654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.93  E-value=0.00063  Score=53.77  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+.|+|+|++|+||||+++.+++.
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999886

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.93  E-value=0.00064  Score=53.67  Aligned_cols=25  Identities=20%  Similarity=0.219  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...|+|.|++|+||||+++.+++.+
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998875

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.92  E-value=0.00059  Score=54.47  Aligned_cols=26  Identities=23%  Similarity=0.161  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .++|+|.|++|+||||+++.+++.+.
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~~l~   37 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVEKYG   37 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999988764

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.91  E-value=0.00076  Score=56.28  Aligned_cols=24  Identities=21%  Similarity=0.360  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+++|.|+.|+|||||.+.++.-.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl~   55 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGIH   55 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999987643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.91  E-value=0.00064  Score=54.52  Aligned_cols=25  Identities=32%  Similarity=0.461  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|++|+|||||++.++..+
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998876

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.91  E-value=0.0034  Score=56.41  Aligned_cols=35  Identities=23%  Similarity=0.163  Sum_probs=28.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      +++|.++|++|+||||++..++..+..+-..+..+
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv  134 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVV  134 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            67999999999999999999999887654444443

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.91  E-value=0.00098  Score=53.78  Aligned_cols=28  Identities=11%  Similarity=0.109  Sum_probs=24.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+|+|.|++|+||||+++.+++.+...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~   37 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN   37 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence            5689999999999999999999976543

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.91  E-value=0.00047  Score=55.51  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .++++|.|++|+||||+++.+++.+.
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            46899999999999999999988763

>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}

Probab=96.91  E-value=0.00084  Score=57.38  Aligned_cols=34  Identities=18%  Similarity=0.016  Sum_probs=27.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC--CCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR--FEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~--~~~~~~~~   38 (329)
                      ++.|+|++|+|||||+.+++......  -..++|+.
T Consensus        30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId   65 (333)
T 3io5_A           30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYD   65 (333)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEe
Confidence            57899999999999999998876654  34566665

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.90  E-value=0.00063  Score=54.61  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++|+|.|++|+||||+++.+++.+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999998764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.88  E-value=0.0008  Score=52.57  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|+|++|+||||+++.++..+
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.88  E-value=0.0074  Score=51.49  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=24.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .++++|+|++|+||||++..++..+..
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~  131 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISML  131 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            468999999999999999999988764

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.87  E-value=0.00082  Score=53.27  Aligned_cols=25  Identities=16%  Similarity=0.165  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++|+|.|++|+||||+++.+++.+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998875

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.87  E-value=0.0004  Score=54.70  Aligned_cols=26  Identities=31%  Similarity=0.319  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|.|++|+||||+++.+++.+.
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l~   30 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERLP   30 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999999988754

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.86  E-value=0.0006  Score=53.10  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++|+|+|++|+||||+++.+++.+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARALG   27 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999988763

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.86  E-value=0.00057  Score=58.38  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=23.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |..++|+|.||+|+|||+|+..+++.+
T Consensus         1 m~~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            1 MKEKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             -CCEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CCCcEEEEECCCcCCHHHHHHHHHHhC
Confidence            456899999999999999999998765

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.84  E-value=0.0024  Score=51.76  Aligned_cols=36  Identities=14%  Similarity=0.105  Sum_probs=28.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ....|+|.|+.|+||||+++.+++.+......++..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~   40 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLT   40 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccc
Confidence            356899999999999999999999887654334433

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.84  E-value=0.00067  Score=57.81  Aligned_cols=25  Identities=28%  Similarity=0.421  Sum_probs=22.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|++|+||||+++.+++.+
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998865

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.83  E-value=0.00088  Score=53.70  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|+|++|+||||+++.+++.+.
T Consensus        20 ~~~I~l~G~~GsGKST~a~~La~~l~   45 (201)
T 2cdn_A           20 HMRVLLLGPPGAGKGTQAVKLAEKLG   45 (201)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34799999999999999999988763

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.82  E-value=0.00081  Score=54.78  Aligned_cols=27  Identities=19%  Similarity=0.327  Sum_probs=23.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ....|+|.|++|+||||+++.+++.+.
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l~   29 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERFH   29 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            456899999999999999999988763

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=96.82  E-value=0.00078  Score=54.04  Aligned_cols=25  Identities=24%  Similarity=0.298  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||++.++...
T Consensus         7 g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            7 ANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4689999999999999999998764

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.82  E-value=0.0052  Score=51.44  Aligned_cols=24  Identities=33%  Similarity=0.363  Sum_probs=21.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+++|.|+.|+|||||.+.++...
T Consensus        31 e~~~i~G~NGsGKSTLlk~l~Gl~   54 (263)
T 2pjz_A           31 EKVIILGPNGSGKTTLLRAISGLL   54 (263)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCCC
Confidence            478999999999999999988654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.81  E-value=0.0013  Score=55.13  Aligned_cols=26  Identities=23%  Similarity=0.349  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|.|++|+||||+++.+++.+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999998764

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.81  E-value=0.0012  Score=54.50  Aligned_cols=35  Identities=20%  Similarity=0.142  Sum_probs=28.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .++.|.|++|+|||||+.+++......-..++|+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~   58 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA   58 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence            57899999999999999999887655545666665

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.79  E-value=0.0009  Score=51.91  Aligned_cols=25  Identities=24%  Similarity=0.313  Sum_probs=22.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..|+|.|++|+||||+++.+++.+.
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~lg   32 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLALK   32 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            5799999999999999999988764

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.79  E-value=0.00088  Score=55.61  Aligned_cols=26  Identities=19%  Similarity=0.247  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+++|.|++|+|||||++.+++.+.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg   52 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFG   52 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999998763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.78  E-value=0.00098  Score=55.28  Aligned_cols=26  Identities=15%  Similarity=0.081  Sum_probs=23.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+..|+|.|++|+||||+++.+++.+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999998875

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.77  E-value=0.00089  Score=53.61  Aligned_cols=24  Identities=33%  Similarity=0.635  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .|+|.|++|+||||+++.+++.+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999998765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.77  E-value=0.00099  Score=54.42  Aligned_cols=25  Identities=24%  Similarity=0.311  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+|+|+|++|+||||+++.+++.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3589999999999999999998765

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.77  E-value=0.00098  Score=53.79  Aligned_cols=27  Identities=19%  Similarity=0.349  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+|+|.|++|+|||||++.++..+..
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~~~~   48 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAALSA   48 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            468999999999999999999887653

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.76  E-value=0.0017  Score=52.00  Aligned_cols=27  Identities=30%  Similarity=0.428  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+++|.|++|+||||+++.++..+..
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~~~~   48 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQTLRE   48 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            468999999999999999999887654

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.76  E-value=0.0025  Score=50.48  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      +|+|.|++|+||||+++.+++.+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~   26 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQ   26 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999998753

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.75  E-value=0.00095  Score=53.61  Aligned_cols=25  Identities=24%  Similarity=0.333  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|++|+||||+++.++..+
T Consensus         6 g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            6 GLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            4689999999999999999998765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.75  E-value=0.00081  Score=55.08  Aligned_cols=25  Identities=20%  Similarity=0.314  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...|+|.|++|+||||+++.+++.+
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4679999999999999999998865

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.74  E-value=0.0036  Score=54.04  Aligned_cols=50  Identities=18%  Similarity=-0.019  Sum_probs=35.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLS   58 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   58 (329)
                      ..++.|.|++|+|||+|+.+++.....+...++|++    .  ..+...+...+..
T Consensus        68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s----l--E~s~~~l~~R~~~  117 (315)
T 3bh0_A           68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS----L--EMGKKENIKRLIV  117 (315)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE----S--SSCHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE----C--CCCHHHHHHHHHH
Confidence            358999999999999999999987665445666765    2  2344455554443

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.74  E-value=0.00093  Score=54.50  Aligned_cols=26  Identities=23%  Similarity=0.160  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ...|+|.|++|+||||+++.+++.+.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46799999999999999999998764

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.74  E-value=0.0012  Score=53.89  Aligned_cols=35  Identities=23%  Similarity=0.250  Sum_probs=27.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .++.|.|++|+|||||+..++......-..+.|+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~   58 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT   58 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence            57899999999999999999976654334555554

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.73  E-value=0.0031  Score=56.62  Aligned_cols=35  Identities=23%  Similarity=0.205  Sum_probs=28.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ++++.++|++|+||||++..++..+...-..+..+
T Consensus        97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv  131 (433)
T 3kl4_A           97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLV  131 (433)
T ss_dssp             SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            57999999999999999999998876654444443

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.72  E-value=0.00088  Score=53.68  Aligned_cols=26  Identities=23%  Similarity=0.370  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+.++|+||+|+|||||++.+...+.
T Consensus         4 g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            4 PRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            46899999999999999999988654

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.72  E-value=0.0077  Score=54.85  Aligned_cols=29  Identities=21%  Similarity=0.250  Sum_probs=24.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE   32 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~   32 (329)
                      +.+.|.|++|+|||+++..++..+.....
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~   74 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEALISTGE   74 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence            48999999999999999999988765543

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.71  E-value=0.005  Score=55.62  Aligned_cols=33  Identities=30%  Similarity=0.563  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      ..+.|+|++|+|||||+..++.....++..++.
T Consensus       152 q~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~V  184 (473)
T 1sky_E          152 GKIGLFGGAGVGKTVLIQELIHNIAQEHGGISV  184 (473)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHHHHTCCCEE
T ss_pred             CEEEEECCCCCCccHHHHHHHhhhhhccCcEEE
Confidence            357899999999999999999876654444443

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.70  E-value=0.0027  Score=52.08  Aligned_cols=27  Identities=19%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+|+|.|++|+||||+++.+++.+..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999999998875

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.70  E-value=0.002  Score=55.31  Aligned_cols=34  Identities=21%  Similarity=0.172  Sum_probs=27.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      ..+++|+|++|+||||++..++..+...-..+.+
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l  135 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF  135 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence            5699999999999999999999887655333333

>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}

Probab=96.69  E-value=0.0018  Score=55.74  Aligned_cols=37  Identities=16%  Similarity=0.244  Sum_probs=30.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.|+|+|+|-|||||||.+..++-.+...-..+..+.
T Consensus        47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID   83 (314)
T 3fwy_A           47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG   83 (314)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            6799999999999999999999998776655555554

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.69  E-value=0.0011  Score=53.69  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .|+|.|++|+||||+++.+++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998875

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.68  E-value=0.0012  Score=52.83  Aligned_cols=25  Identities=32%  Similarity=0.352  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...+|+|+|++|+||||+++.+++.
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3578999999999999999999875

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.68  E-value=0.0013  Score=52.99  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+++|.|+.|+|||||++.++..+.
T Consensus         6 ~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            6 PFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            46899999999999999999988764

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.68  E-value=0.0011  Score=52.50  Aligned_cols=22  Identities=27%  Similarity=0.252  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .+++|.|++|+|||||++.++.
T Consensus         3 ~ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            3 KLYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhc
Confidence            5789999999999999999976

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.68  E-value=0.0031  Score=51.04  Aligned_cols=53  Identities=21%  Similarity=0.223  Sum_probs=35.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCC-ceEEEeccchhhhcCChHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFE-GSYFAHNVREAEETGKLADLRKELLS   58 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~   58 (329)
                      ....|+|.|+.|+||||+++.+++.+..... .+.+..    .+....+.+.++.++.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~r----ep~~t~~g~~ir~~l~   55 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR----EPGGTQLAEKLRSLLL   55 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE----SSCSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeee----CCCCCHHHHHHHHHHh
Confidence            4578999999999999999999998865432 444444    2222344555555544

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.67  E-value=0.0012  Score=51.07  Aligned_cols=24  Identities=13%  Similarity=0.295  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .|+|+|++|+||||+++.+++.+.
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~   25 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLN   25 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            589999999999999999988764

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.66  E-value=0.00089  Score=53.46  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.+.|+||+|+|||++|..+++.+.
T Consensus        59 n~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           59 NCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3799999999999999999988864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.66  E-value=0.0012  Score=52.85  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=23.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ....|+|.|++|+||||+++.+++.+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999998876

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.65  E-value=0.0013  Score=51.73  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .++|+|+.|+|||||++.++..+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999998764

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.62  E-value=0.0035  Score=51.56  Aligned_cols=36  Identities=14%  Similarity=0.097  Sum_probs=28.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCc-eEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEG-SYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~-~~~~~   38 (329)
                      ..+|+|.|++|+||||+++.+++.+....-. +....
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~r   63 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTR   63 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeec
Confidence            4689999999999999999999987654333 44444

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.61  E-value=0.0016  Score=55.53  Aligned_cols=28  Identities=14%  Similarity=0.123  Sum_probs=24.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .+.+|+|.|++|+|||||++.+...+..
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~   57 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIYNHLME   57 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence            3568999999999999999999887653

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.61  E-value=0.0014  Score=54.69  Aligned_cols=26  Identities=15%  Similarity=0.327  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|.|++|+||||+++.+++.+.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            46899999999999999999988654

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=96.61  E-value=0.002  Score=56.56  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++.|+|++|+||||||.+++......-..++|+.
T Consensus        63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid   98 (356)
T 1u94_A           63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   98 (356)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            368999999999999999999987765545677776

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.60  E-value=0.0023  Score=49.99  Aligned_cols=28  Identities=21%  Similarity=0.297  Sum_probs=24.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      .++++|.|++|+|||||+..++..+...
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            5789999999999999999999876543

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.60  E-value=0.0012  Score=53.53  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .|+|+|++|+||||+++.+++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.60  E-value=0.0014  Score=55.89  Aligned_cols=25  Identities=24%  Similarity=0.185  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++++|.||+|+|||+|+..+++.+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4689999999999999999998875

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.59  E-value=0.002  Score=56.38  Aligned_cols=36  Identities=19%  Similarity=0.130  Sum_probs=29.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++.|+|++|+|||||+.+++......-..++|+.
T Consensus        61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~   96 (349)
T 2zr9_A           61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID   96 (349)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence            368999999999999999999987665545667766

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.59  E-value=0.0013  Score=52.84  Aligned_cols=22  Identities=32%  Similarity=0.519  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .+|+|+|++|+||||+++.+++
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3689999999999999999987

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.59  E-value=0.0051  Score=54.37  Aligned_cols=108  Identities=12%  Similarity=0.083  Sum_probs=57.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceE-EEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY-FAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      ..+++|+|+.|+||||++..++..+.......+ +.....+.......         .+..+.............+...+
T Consensus       136 g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~---------~~v~Q~~~g~~~~~~~~~l~~~L  206 (372)
T 2ewv_A          136 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK---------SIVNQREVGEDTKSFADALRAAL  206 (372)
T ss_dssp             SEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCSHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCc---------eEEEeeecCCCHHHHHHHHHHHh
Confidence            357999999999999999999987654322333 32211000000000         00000000000112344566666


Q ss_pred             cCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           82 TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      ...+-+|++|++.+.+.+...+...   ..|..++.|+...
T Consensus       207 ~~~pd~illdE~~d~e~~~~~l~~~---~~g~~vi~t~H~~  244 (372)
T 2ewv_A          207 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTN  244 (372)
T ss_dssp             TSCCSEEEESCCCSHHHHHHHHHHH---TTTCEEEECCCCC
T ss_pred             hhCcCEEEECCCCCHHHHHHHHHHH---hcCCEEEEEECcc
Confidence            6677799999998776665544432   2345566666654

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.59  E-value=0.001  Score=55.50  Aligned_cols=26  Identities=23%  Similarity=0.239  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+++|.|++|+||||+++.+++.+.
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            56899999999999999999988764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.59  E-value=0.0031  Score=55.30  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||++.++.-
T Consensus        54 Gei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           54 GQIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCchHHHHHHHHhcC
Confidence            357899999999999999988753

>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*

Probab=96.58  E-value=0.0096  Score=47.88  Aligned_cols=109  Identities=13%  Similarity=0.027  Sum_probs=53.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ..+.+++|+.|.||||.+...+.++..+...++.+....+  ......    .+.+.++.........+ . ..+.+...
T Consensus        28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d--~R~ge~----~i~s~~g~~~~a~~~~~-~-~~~~~~~~   99 (214)
T 2j9r_A           28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID--NRYSEE----DVVSHNGLKVKAVPVSA-S-KDIFKHIT   99 (214)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------------CCEEECSS-G-GGGGGGCC
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC--CcchHH----HHHhhcCCeeEEeecCC-H-HHHHHHHh
Confidence            3688899999999999999999988666555555431111  111111    22233222111000000 1 11222222


Q ss_pred             CceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           83 RKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        83 ~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      +.--+|++|++.  +.+.+ +++..+.  ..+..||+|.++.
T Consensus       100 ~~~dvViIDEaQF~~~~~V-~~l~~l~--~~~~~Vi~~Gl~~  138 (214)
T 2j9r_A          100 EEMDVIAIDEVQFFDGDIV-EVVQVLA--NRGYRVIVAGLDQ  138 (214)
T ss_dssp             SSCCEEEECCGGGSCTTHH-HHHHHHH--HTTCEEEEEECSB
T ss_pred             cCCCEEEEECcccCCHHHH-HHHHHHh--hCCCEEEEEeccc
Confidence            223399999983  34444 3333322  2377899999854

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.56  E-value=0.00081  Score=54.35  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ++|+|.|++|+||||+++.+++.+..
T Consensus         1 ~~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            1 MLIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            37899999999999999999988754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.55  E-value=0.0016  Score=53.45  Aligned_cols=26  Identities=15%  Similarity=0.360  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|.|++|+||||+++.+++.+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~lg   34 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARALG   34 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999988763

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=96.55  E-value=0.0024  Score=52.82  Aligned_cols=35  Identities=29%  Similarity=0.259  Sum_probs=26.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH-hcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI-SRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~-~~~~~~~~~~~   38 (329)
                      .++.|.|++|+|||+||.+++... .+....++|++
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s   66 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVT   66 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeec
Confidence            578999999999999999988654 33334455544

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.54  E-value=0.0014  Score=52.75  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+|+|+|++|+||||+++.++..
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999998764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.54  E-value=0.0024  Score=54.51  Aligned_cols=36  Identities=11%  Similarity=-0.002  Sum_probs=28.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCC-ceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE-GSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~-~~~~~~   38 (329)
                      ..+++|.|++|+|||||+..++........ .+.|+.
T Consensus        35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~   71 (296)
T 1cr0_A           35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (296)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence            358999999999999999999987765433 455554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.52  E-value=0.0028  Score=54.26  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=26.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      ..+++|.|+.|+||||+++.++..+...-..+.+
T Consensus       100 g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l  133 (302)
T 3b9q_A          100 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM  133 (302)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence            4689999999999999999999877654333333

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.51  E-value=0.0012  Score=57.15  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++|+|.||.|+|||+|+..+++.+
T Consensus        40 ~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           40 EKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHC
Confidence            3689999999999999999998765

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.51  E-value=0.0021  Score=51.97  Aligned_cols=26  Identities=15%  Similarity=0.257  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|.|++|+||||+++.+++.+.
T Consensus        25 ~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           25 GLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999999998765

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.50  E-value=0.0033  Score=49.20  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+|+|+|+.|+||||+++.++..+..
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            468899999999999999999987643

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.50  E-value=0.0031  Score=51.52  Aligned_cols=28  Identities=29%  Similarity=0.370  Sum_probs=21.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ...|+|.|+.|+||||+++.+++.+...
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            4689999999999999999999987654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=96.50  E-value=0.0017  Score=52.89  Aligned_cols=26  Identities=15%  Similarity=0.195  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+++|.||+|+|||||++.++....
T Consensus        16 G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           16 GTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            46899999999999999999988754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=96.50  E-value=0.006  Score=52.94  Aligned_cols=50  Identities=16%  Similarity=-0.002  Sum_probs=35.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLST   59 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   59 (329)
                      .++.|.|++|+|||+|+.+++......-..+.|++      -..+...+...++..
T Consensus        47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fS------lEms~~ql~~Rlls~   96 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFS------LEMSAEQLALRALSD   96 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEE------SSSCHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe------CCCCHHHHHHHHHHH
Confidence            58999999999999999999988765445566655      123445555555443

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.49  E-value=0.0019  Score=52.45  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=21.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ...+|+|.|++|+||||+++.+++
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999876

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.49  E-value=0.0017  Score=56.35  Aligned_cols=25  Identities=24%  Similarity=0.203  Sum_probs=22.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++|+|.|++|+|||||+..+++.+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            5899999999999999999998764

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=96.49  E-value=0.0015  Score=51.01  Aligned_cols=21  Identities=24%  Similarity=0.330  Sum_probs=18.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAF   23 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~   23 (329)
                      ..+++|.|++|+|||||++.+
T Consensus         9 gei~~l~G~nGsGKSTl~~~~   29 (171)
T 4gp7_A            9 LSLVVLIGSSGSGKSTFAKKH   29 (171)
T ss_dssp             SEEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHH
Confidence            468999999999999999953

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.48  E-value=0.0014  Score=52.63  Aligned_cols=22  Identities=41%  Similarity=0.487  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .+|+|+|++|+||||+++.++.
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999999976

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.48  E-value=0.0016  Score=56.05  Aligned_cols=24  Identities=25%  Similarity=0.253  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++|+|+|++|+|||||+..+++.+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            589999999999999999998875

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.48  E-value=0.0033  Score=54.34  Aligned_cols=36  Identities=17%  Similarity=0.095  Sum_probs=28.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ..+++.|+|++|+||||++..++..+...-..+.++
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli  139 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA  139 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence            357899999999999999999999877654444444

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.48  E-value=0.0029  Score=51.55  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..++.|.|++|+|||||++.++....
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g~~~   50 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAVMVQ   50 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            35899999999999999999988543

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.48  E-value=0.0031  Score=54.64  Aligned_cols=35  Identities=17%  Similarity=0.138  Sum_probs=28.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ..+++|.|+.|+||||+++.++..+...-..+.+.
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~  163 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA  163 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence            56899999999999999999998776554444443

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.47  E-value=0.0019  Score=53.89  Aligned_cols=26  Identities=19%  Similarity=0.311  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|.|++|+||||+++.+++.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La~~Lg   52 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALAESLN   52 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            35899999999999999999988753

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=96.46  E-value=0.0019  Score=51.80  Aligned_cols=25  Identities=20%  Similarity=0.233  Sum_probs=22.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++|+|.|++|+||||+++.+++.+.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3899999999999999999988763

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.44  E-value=0.0057  Score=52.99  Aligned_cols=35  Identities=14%  Similarity=0.172  Sum_probs=27.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~   38 (329)
                      .++.|+|++|+|||+|+.+++......      -..++|+.
T Consensus       108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~  148 (324)
T 2z43_A          108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYID  148 (324)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEE
T ss_pred             cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence            588999999999999999999875432      24566665

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.43  E-value=0.0032  Score=51.78  Aligned_cols=35  Identities=14%  Similarity=0.097  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc------CCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR------RFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~------~~~~~~~~~   38 (329)
                      .++.|.|++|+|||||+.+++.....      .-..++|+.
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~   65 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYID   65 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEE
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEE
Confidence            57899999999999999999986432      134566665

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.41  E-value=0.0011  Score=56.62  Aligned_cols=27  Identities=15%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ...+|+|+|++|+||||+++.+++.+.
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            457899999999999999999988654

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.39  E-value=0.0022  Score=52.34  Aligned_cols=23  Identities=26%  Similarity=0.345  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .|+|.|++|+||||+++.+++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998876

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.39  E-value=0.0039  Score=50.69  Aligned_cols=29  Identities=17%  Similarity=0.349  Sum_probs=24.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+.|+|.|.+|+|||||+..++......
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~   65 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDK   65 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence            35789999999999999999999875443

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.39  E-value=0.0047  Score=50.31  Aligned_cols=27  Identities=26%  Similarity=0.306  Sum_probs=24.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ...|+|.|+.|+||||+++.+++.+..
T Consensus        21 ~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           21 SMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            568999999999999999999998765

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=96.39  E-value=0.0018  Score=52.67  Aligned_cols=25  Identities=28%  Similarity=0.445  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|+|++|+|||||++.++..+
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            4578999999999999999998865

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.39  E-value=0.0025  Score=52.36  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=22.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..|+|.|++|+||||+++.+++.+.
T Consensus        17 ~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           17 VRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999998864

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.38  E-value=0.0045  Score=51.64  Aligned_cols=35  Identities=20%  Similarity=0.263  Sum_probs=27.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ...++++.|.+|+||||++..++..+. .-..+..+
T Consensus        13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vv   47 (262)
T 1yrb_A           13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYV   47 (262)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEE
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEE
Confidence            457899999999999999999998876 43334443

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.38  E-value=0.0024  Score=50.84  Aligned_cols=25  Identities=24%  Similarity=0.384  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+|+|+|+.|+||||+++.+++.+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4589999999999999999998864

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.38  E-value=0.0047  Score=50.16  Aligned_cols=34  Identities=21%  Similarity=-0.050  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .|++.|.||+||||++...+.....+-..+.+..
T Consensus         8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d   41 (228)
T 2r8r_A            8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV   41 (228)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence            4889999999999999999988766543444443

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.38  E-value=0.0023  Score=51.80  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .|+|.|++|+||||+++.+++.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47999999999999999998876

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.38  E-value=0.0023  Score=51.99  Aligned_cols=24  Identities=21%  Similarity=0.181  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..|+|.|++|+||||+++.+++.+
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999999876

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=96.37  E-value=0.0033  Score=55.29  Aligned_cols=36  Identities=22%  Similarity=0.183  Sum_probs=29.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++.|+|++|+|||+||.+++......-..++|+.
T Consensus        74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~  109 (366)
T 1xp8_A           74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID  109 (366)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence            358899999999999999999987765555677776

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.36  E-value=0.0028  Score=52.56  Aligned_cols=25  Identities=16%  Similarity=0.331  Sum_probs=22.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+|+|.|+.|+|||||++.++..+
T Consensus        25 g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           25 PFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            4589999999999999999998865

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.36  E-value=0.0016  Score=51.71  Aligned_cols=25  Identities=28%  Similarity=0.223  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.|+|.|++|+|||+||..++++.
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4678999999999999999998763

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=96.34  E-value=0.0041  Score=52.57  Aligned_cols=27  Identities=22%  Similarity=0.270  Sum_probs=23.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..++.|.|++|+|||||+.+++..+..
T Consensus        30 G~i~~i~G~~GsGKTtl~~~l~~~~~~   56 (279)
T 1nlf_A           30 GTVGALVSPGGAGKSMLALQLAAQIAG   56 (279)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            358999999999999999999986554

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.33  E-value=0.0043  Score=50.25  Aligned_cols=29  Identities=28%  Similarity=0.378  Sum_probs=25.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+.|+|.|.+|+|||||+..++......
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~   57 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNE   57 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccC
Confidence            45789999999999999999999876544

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.31  E-value=0.0043  Score=54.40  Aligned_cols=34  Identities=21%  Similarity=0.287  Sum_probs=26.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      ..++.|+|+.|+||||+++.++..+...-..+.+
T Consensus       157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l  190 (359)
T 2og2_A          157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM  190 (359)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence            4689999999999999999999887654333333

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.31  E-value=0.003  Score=54.47  Aligned_cols=26  Identities=27%  Similarity=0.346  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.+++|.|++|+|||||++.+...+.
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~~ll~  117 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLKALLS  117 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            45899999999999999999887765

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.31  E-value=0.003  Score=54.33  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+|+|.|++|+|||||++.++..+..
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gll~~  116 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQALLAR  116 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCchHHHHHHHHHhhccc
Confidence            468999999999999999999887653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=96.29  E-value=0.011  Score=64.28  Aligned_cols=23  Identities=26%  Similarity=0.293  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      +-|.++||+|+|||++|+.++..
T Consensus      1268 ~~vLL~GPpGtGKT~la~~~l~~ 1290 (2695)
T 4akg_A         1268 RGIILCGPPGSGKTMIMNNALRN 1290 (2695)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHhc
Confidence            56889999999999999887664

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=96.28  E-value=0.0027  Score=51.14  Aligned_cols=26  Identities=19%  Similarity=0.284  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+++|.|+.|+|||||++.++..+.
T Consensus        20 Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           20 GRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46899999999999999999987653

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.26  E-value=0.0026  Score=54.41  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+|+|.|++|+||||+++.+++.
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            68999999999999999999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.25  E-value=0.002  Score=50.26  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=23.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ++++|+|++|+|||||++.++..+...
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            579999999999999999999877643

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.25  E-value=0.0057  Score=52.54  Aligned_cols=26  Identities=27%  Similarity=0.293  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|.|+.|+|||||++.++..+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~l~  105 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQALLS  105 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            35899999999999999999988765

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.25  E-value=0.0034  Score=48.18  Aligned_cols=25  Identities=24%  Similarity=0.304  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||++.++...
T Consensus        33 Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           33 AIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhC
Confidence            3589999999999999999999876

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.25  E-value=0.0028  Score=53.75  Aligned_cols=23  Identities=35%  Similarity=0.564  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ..+|+|+|++|+||||+++.++.
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999983

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.24  E-value=0.0023  Score=53.20  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+.|+|+|++|+||||+++.++..+.
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            46799999999999999999998763

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.24  E-value=0.054  Score=44.28  Aligned_cols=23  Identities=30%  Similarity=0.365  Sum_probs=18.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .+.++|.|+.|+|||++.....-
T Consensus        76 g~~~~i~g~TGsGKTt~~~~~~~   98 (235)
T 3llm_A           76 NSVVIIRGATGCGKTTQVPQFIL   98 (235)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCcHHhHHHHHh
Confidence            36789999999999987776653

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.23  E-value=0.0051  Score=55.43  Aligned_cols=37  Identities=16%  Similarity=0.201  Sum_probs=29.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~   38 (329)
                      .+++|.++|.+|+||||++..++..+..+ -..+..+.
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd  136 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS  136 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence            36789999999999999999999988765 33444443

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.21  E-value=0.0048  Score=51.65  Aligned_cols=109  Identities=12%  Similarity=0.084  Sum_probs=56.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEec-cchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHN-VREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      ..+++|+|+.|+|||||++.++..+...+.+.+++.. .-+.......         .+..+....-........+...+
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~---------~~v~q~~~gl~~~~l~~~la~aL   95 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKK---------SIVNQREVGEDTKSFADALRAAL   95 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSS---------SEEEEEEBTTTBSCHHHHHHHHH
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcc---------eeeeHHHhCCCHHHHHHHHHHHH
Confidence            3589999999999999999998876543233333321 0000000000         00000000000011233444455


Q ss_pred             cCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchh
Q 020206           82 TRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQ  123 (329)
Q Consensus        82 ~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~  123 (329)
                      ...+-+|++|+..+.+....++...   ..+..+++|+....
T Consensus        96 ~~~p~illlDEp~D~~~~~~~l~~~---~~g~~vl~t~H~~~  134 (261)
T 2eyu_A           96 REDPDVIFVGEMRDLETVETALRAA---ETGHLVFGTLHTNT  134 (261)
T ss_dssp             HHCCSEEEESCCCSHHHHHHHHHHH---HTTCEEEEEECCSS
T ss_pred             hhCCCEEEeCCCCCHHHHHHHHHHH---ccCCEEEEEeCcch
Confidence            5566689999997666655544432   23556777777643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.21  E-value=0.005  Score=56.00  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=27.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      ..+++|+|+.|+|||||++.++..+...-..+.+
T Consensus       293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l  326 (503)
T 2yhs_A          293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML  326 (503)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEE
Confidence            4689999999999999999999877654333433

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=96.20  E-value=0.009  Score=47.66  Aligned_cols=34  Identities=18%  Similarity=0.218  Sum_probs=28.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .|+|-|.-|+||||.++.+++.+..+...+++..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr   35 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR   35 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            4788999999999999999999887765666655

>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*

Probab=96.19  E-value=0.041  Score=51.91  Aligned_cols=26  Identities=23%  Similarity=0.208  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+.++|+|++|+||||++..+...+.
T Consensus       164 ~~~~vi~G~pGTGKTt~l~~ll~~l~  189 (608)
T 1w36_D          164 RRISVISGGPGTGKTTTVAKLLAALI  189 (608)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            47899999999999999998887664

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.19  E-value=0.0032  Score=55.69  Aligned_cols=26  Identities=27%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .++|+|.||+|+|||+|+..+++.+.
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCC
Confidence            36899999999999999999998764

>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...

Probab=96.19  E-value=0.017  Score=52.07  Aligned_cols=53  Identities=28%  Similarity=0.448  Sum_probs=32.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLS   58 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   58 (329)
                      ..+.|.|.+|+|||+|+.+++.........++.+.-.++-  .....++++.+..
T Consensus       154 Qr~~Ifgg~G~GKT~L~~~i~~~~~~~~~~v~V~~~iGER--~rEv~e~~~~~~~  206 (482)
T 2ck3_D          154 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAGVGER--TREGNDLYHEMIE  206 (482)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTTTCSSEEEEEEESCC--HHHHHHHHHHHHH
T ss_pred             CeeeeecCCCCChHHHHHHHHHhhHhhCCCEEEEEECCCc--chHHHHHHHHhhh
Confidence            4578999999999999999999875443333333212111  1234455555544

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.17  E-value=0.0065  Score=53.35  Aligned_cols=36  Identities=25%  Similarity=0.326  Sum_probs=27.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      +.++|+|+|.+|+|||||+..++..+......+..+
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi  113 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVL  113 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence            457899999999999999999998775543333333

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.17  E-value=0.0032  Score=49.95  Aligned_cols=25  Identities=24%  Similarity=0.217  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+++|+|+.|+|||||++.++..+.
T Consensus         2 ~~i~i~G~nG~GKTTll~~l~g~~~   26 (189)
T 2i3b_A            2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCChHHHHHHHHHhhcc
Confidence            3689999999999999999998765

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.11  E-value=0.0023  Score=57.52  Aligned_cols=26  Identities=15%  Similarity=0.216  Sum_probs=22.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++|+|+|++|+||||+++.+++..
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            35789999999999999999987654

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=96.11  E-value=0.0048  Score=55.85  Aligned_cols=36  Identities=19%  Similarity=-0.011  Sum_probs=28.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|.+|+|||+|+.+++.....+-..++|++
T Consensus       197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fS  232 (444)
T 3bgw_A          197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS  232 (444)
T ss_dssp             SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEE
Confidence            358999999999999999999998765544566654

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=96.11  E-value=0.0025  Score=55.38  Aligned_cols=26  Identities=15%  Similarity=0.220  Sum_probs=22.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .-+.++|++|+|||+||+.+++....
T Consensus        47 ~~vll~G~pGtGKT~la~~la~~~~~   72 (331)
T 2r44_A           47 GHILLEGVPGLAKTLSVNTLAKTMDL   72 (331)
T ss_dssp             CCEEEESCCCHHHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCC
Confidence            35789999999999999999987654

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=96.09  E-value=0.0067  Score=51.74  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=27.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .++++|+|++|+||||++..++..+...-..+.+.
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~  132 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV  132 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence            46888999999999999999998876554444444

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.08  E-value=0.0021  Score=52.68  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=16.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH-HHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFF-SKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~-~~~   27 (329)
                      ..+++|+|+.|+|||||++.++ ..+
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            3689999999999999999998 654

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=96.07  E-value=0.011  Score=55.57  Aligned_cols=24  Identities=29%  Similarity=0.392  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+++|.|+.|+|||||++.++...
T Consensus       383 ei~~i~G~NGsGKSTLlk~l~Gl~  406 (607)
T 3bk7_A          383 EVIGIVGPNGIGKTTFVKMLAGVE  406 (607)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            578999999999999999998753

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=96.05  E-value=0.0068  Score=63.95  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=30.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+.+.|+||+|+|||+||.+++.....+-..+.|+.
T Consensus      1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~ 1462 (2050)
T 3cmu_A         1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID 1462 (2050)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence            468999999999999999999988776656677766

>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*

Probab=96.04  E-value=0.0089  Score=51.91  Aligned_cols=37  Identities=19%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.+++++.|-||+||||++..++..+...-..+..+.
T Consensus        15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid   51 (334)
T 3iqw_A           15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS   51 (334)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred             CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence            3578999999999999999999998877655566655

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.02  E-value=0.0047  Score=47.55  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ....|+|.|++|+|||||...++.
T Consensus         2 ~~~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            2 KSYEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhC
Confidence            346789999999999999999975

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=95.96  E-value=0.0089  Score=50.06  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=27.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++|+|.|-||+||||++..++..+...-..+..+.
T Consensus         2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD   36 (269)
T 1cp2_A            2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG   36 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEc
Confidence            57788999999999999999998876544455543

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.95  E-value=0.0033  Score=56.62  Aligned_cols=35  Identities=26%  Similarity=0.234  Sum_probs=27.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      +++|.|+|++|+||||++..++..+..+-..+.++
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv  133 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALI  133 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence            46899999999999999999998776543334444

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.94  E-value=0.012  Score=50.71  Aligned_cols=25  Identities=24%  Similarity=0.223  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++.|+|++|+|||+|+.+++...
T Consensus        98 g~i~~i~G~~gsGKT~la~~la~~~  122 (322)
T 2i1q_A           98 QSVTEFAGVFGSGKTQIMHQSCVNL  122 (322)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            3689999999999999999999864

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.93  E-value=0.0062  Score=51.98  Aligned_cols=36  Identities=19%  Similarity=0.172  Sum_probs=28.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++.+.|++|+||||++..++..+...-..+.++.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~  133 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG  133 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            568899999999999999999988765544455544

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.92  E-value=0.013  Score=53.10  Aligned_cols=51  Identities=18%  Similarity=0.017  Sum_probs=35.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEeccchhhhcCChHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRKELLST   59 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   59 (329)
                      ..++.|.|++|+|||+|+.+++...... -..++|++    .  ..+...+...++..
T Consensus       200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~s----l--E~~~~~l~~R~~~~  251 (444)
T 2q6t_A          200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYS----L--EMPAAQLTLRMMCS  251 (444)
T ss_dssp             TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE----S--SSCHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEE----C--CCCHHHHHHHHHHH
Confidence            3589999999999999999999877643 33566655    2  23455566555443

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.91  E-value=0.0085  Score=55.38  Aligned_cols=32  Identities=16%  Similarity=0.078  Sum_probs=26.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCce
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGS   34 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~   34 (329)
                      ..+|+++|++|+||||+++.+++.+...+-..
T Consensus        35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~   66 (520)
T 2axn_A           35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPT   66 (520)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCe
Confidence            46899999999999999999998875444333

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.91  E-value=0.0043  Score=50.26  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...+|+|+|++|+||||+++.+++.+
T Consensus         2 ~~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            2 KAINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             -CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhc
Confidence            45689999999999999999998765

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.90  E-value=0.0054  Score=49.14  Aligned_cols=27  Identities=15%  Similarity=0.076  Sum_probs=23.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +..+|+|.|+.|+||||+++.+++.+.
T Consensus         5 ~~~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            5 KQIIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CCeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            357899999999999999999999874

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.89  E-value=0.0064  Score=56.41  Aligned_cols=24  Identities=33%  Similarity=0.556  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++..
T Consensus        25 Gei~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           25 NTILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            368999999999999999988764

>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*

Probab=95.89  E-value=0.012  Score=53.27  Aligned_cols=53  Identities=30%  Similarity=0.412  Sum_probs=32.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLS   58 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   58 (329)
                      ..+.|.|.+|+|||+|+.+++..+......++.+.-.++-  .....++++.+..
T Consensus       166 qr~gIfgg~GvGKT~L~~~l~~~~a~~~~~v~V~~~iGER--~rEv~e~~~~~~~  218 (498)
T 1fx0_B          166 GKIGLFGGAGVGKTVLIMELINNIAKAHGGVSVFGGVGER--TREGNDLYMEMKE  218 (498)
T ss_dssp             CCEEEEECSSSSHHHHHHHHHHHTTTTCSSCEEEEEESCC--SHHHHHHHHHHHH
T ss_pred             CeEEeecCCCCCchHHHHHHHHHHHhhCCCEEEEEEcccC--cHHHHHHHHhhhc
Confidence            3578999999999999999999875443333333212111  1234455555543

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=95.88  E-value=0.0053  Score=50.64  Aligned_cols=26  Identities=23%  Similarity=0.236  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +..|+|.|..|+||||+++.+++.+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            57899999999999999999998864

>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=95.88  E-value=0.014  Score=50.53  Aligned_cols=36  Identities=33%  Similarity=0.287  Sum_probs=29.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .++++..|.||+||||+|..++..+.+.-..+..+.
T Consensus        14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD   49 (324)
T 3zq6_A           14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVIS   49 (324)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence            467888899999999999999998877655566555

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=95.87  E-value=0.0057  Score=46.48  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      +.|+|.|++|+|||||+..+...
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999764

>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}

Probab=95.86  E-value=0.012  Score=51.47  Aligned_cols=37  Identities=22%  Similarity=0.237  Sum_probs=30.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh--cCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS--RRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~--~~~~~~~~~~   38 (329)
                      ..+++++.|-||+||||++..++..+.  ..-..+..+.
T Consensus        17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid   55 (348)
T 3io3_A           17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIS   55 (348)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred             CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            357999999999999999999999887  5555555554

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.85  E-value=0.0066  Score=55.20  Aligned_cols=36  Identities=19%  Similarity=0.098  Sum_probs=28.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~   38 (329)
                      ..++.|.|++|+|||||+.+++...... -..++|++
T Consensus       203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s  239 (454)
T 2r6a_A          203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS  239 (454)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            3589999999999999999999877543 23566655

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.85  E-value=0.0065  Score=49.93  Aligned_cols=25  Identities=24%  Similarity=0.331  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+|+|.|++|+||||+++.+++.+
T Consensus        16 ~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           16 TIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999998865

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.85  E-value=0.0089  Score=54.82  Aligned_cols=36  Identities=17%  Similarity=0.147  Sum_probs=27.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .+++|.|+|.+|+||||++..++..+...-..+..+
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllV  135 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLI  135 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence            357899999999999999999998876543334443

>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A

Probab=95.83  E-value=0.01  Score=50.40  Aligned_cols=36  Identities=17%  Similarity=0.335  Sum_probs=28.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      -++|+|.|-||+||||++..++..+...-..+..+.
T Consensus         2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD   37 (289)
T 2afh_E            2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG   37 (289)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence            367888999999999999999998876544444443

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=95.83  E-value=0.016  Score=53.48  Aligned_cols=51  Identities=6%  Similarity=-0.059  Sum_probs=35.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEeccchhhhcCChHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRKELLST   59 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~   59 (329)
                      ..++.|.|++|+|||+|+.+++...... -..++|++    .  ..+...+...++..
T Consensus       242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s----~--E~s~~~l~~r~~~~  293 (503)
T 1q57_A          242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAM----L--EESVEETAEDLIGL  293 (503)
T ss_dssp             TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEE----S--SSCHHHHHHHHHHH
T ss_pred             CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEe----c--cCCHHHHHHHHHHH
Confidence            3578999999999999999999987665 34566665    2  23445555544433

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.81  E-value=0.0042  Score=53.65  Aligned_cols=26  Identities=19%  Similarity=0.219  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++++|+|+.|+|||||.+.+....
T Consensus         3 ~i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            3 PIAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cccEEEEEecCCCCHHHHHHHHHhhc
Confidence            46899999999999999999998754

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=95.80  E-value=0.0057  Score=48.39  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -.|+|.|++|+|||||+..++..
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.79  E-value=0.0083  Score=52.49  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=23.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..++.|+|++|+|||||+.+++..+.
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~~~  156 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVMVQ  156 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            36899999999999999999998763

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.78  E-value=0.0045  Score=50.96  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        31 Ge~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           31 GEFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            357899999999999999988753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.77  E-value=0.011  Score=51.62  Aligned_cols=28  Identities=25%  Similarity=0.459  Sum_probs=24.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+|+|+|++|+|||||...+.......
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~  101 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTER  101 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence            6789999999999999999999866544

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=95.74  E-value=0.012  Score=52.64  Aligned_cols=35  Identities=17%  Similarity=0.119  Sum_probs=27.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .+++.|+|++|+||||++..++..+...-..+.++
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv  132 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV  132 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence            46889999999999999999999887654444443

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.73  E-value=0.0048  Score=50.37  Aligned_cols=23  Identities=22%  Similarity=0.164  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||.+.++.-
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999988753

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=95.73  E-value=0.0058  Score=50.42  Aligned_cols=23  Identities=17%  Similarity=0.115  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||.+.++.-
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998864

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.72  E-value=0.011  Score=55.70  Aligned_cols=123  Identities=11%  Similarity=0.030  Sum_probs=61.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCC------ceEEEeccc---------h-----hhhcCChHHHHHHHHHHHhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE------GSYFAHNVR---------E-----AEETGKLADLRKELLSTLLND   63 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~------~~~~~~~~~---------~-----~~~~~~~~~~~~~i~~~~~~~   63 (329)
                      .+++|.|+.|+|||||++.++......-.      .+.++....         +     .............++..+...
T Consensus       379 Eiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~  458 (608)
T 3j16_B          379 EILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID  458 (608)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh
Confidence            57899999999999999999864322111      112211000         0     000001112333444444433


Q ss_pred             CCCCCCCCc------chHHHHhhhcCceEEEEEecCC---Chhh---HHHHhcccCCCCCCcEEEEEeCchhHHHh
Q 020206           64 GNMNKFPNI------GLNFQSKRLTRKKVLIVFDDVN---HPRQ---IEFLIGNLDWFASGSRILITARDKQALIN  127 (329)
Q Consensus        64 ~~~~~~~~~------~~~~l~~~~~~~~~LlvlDdv~---~~~~---~~~l~~~l~~~~~~~~ilitsr~~~~~~~  127 (329)
                      ...+.....      ..-.+.+.+...+-+|++|+--   +...   +..++..+.. ..+..+|++|.+......
T Consensus       459 ~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~-~~g~tviivtHdl~~~~~  533 (608)
T 3j16_B          459 DIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFIL-HNKKTAFIVEHDFIMATY  533 (608)
T ss_dssp             TTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHH-HHTCEEEEECSCHHHHHH
T ss_pred             hhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHH
Confidence            222122221      2334455666778899999872   2322   2222222210 136678888888755544

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=95.71  E-value=0.022  Score=45.64  Aligned_cols=28  Identities=18%  Similarity=0.442  Sum_probs=24.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      +.|+|-|.-|+||||+++.+++.+...+
T Consensus         3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~   30 (205)
T 4hlc_A            3 AFITFEGPEGSGKTTVINEVYHRLVKDY   30 (205)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHHTTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHCCC
Confidence            5789999999999999999999886544

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.70  E-value=0.0032  Score=54.97  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      -+.|+|++|+|||++|+.+++...
T Consensus        47 ~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             eEEEECCCCccHHHHHHHHHHhCc
Confidence            388999999999999999998764

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=95.69  E-value=0.0062  Score=48.46  Aligned_cols=23  Identities=30%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..|+|.|++|+|||||...++..
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=95.69  E-value=0.0046  Score=49.85  Aligned_cols=23  Identities=30%  Similarity=0.118  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||++.++..
T Consensus        23 e~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            47899999999999999999875

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=95.68  E-value=0.02  Score=46.31  Aligned_cols=27  Identities=22%  Similarity=0.300  Sum_probs=24.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ...|+|.|+.|+||||+++.+++.+..
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            578999999999999999999998875

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.66  E-value=0.0076  Score=46.60  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=21.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -+.|.|.|++|+||||||..+.++
T Consensus        16 G~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           16 KMGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            467899999999999999999874

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.66  E-value=0.0073  Score=53.31  Aligned_cols=25  Identities=24%  Similarity=0.120  Sum_probs=22.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.++|+|++|+|||||++.++...
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhc
Confidence            4689999999999999999998764

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=95.65  E-value=0.005  Score=48.31  Aligned_cols=21  Identities=38%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|++|+|||||+..++.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999999875

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.65  E-value=0.006  Score=54.90  Aligned_cols=26  Identities=31%  Similarity=0.313  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      +-+.++|++|+|||++|+.++..+..
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~~l~~   76 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAKLANA   76 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            56899999999999999999988643

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=95.63  E-value=0.0082  Score=47.04  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|++|+|||||+..++..
T Consensus         7 ~~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            7 SYEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999763

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=95.63  E-value=0.0087  Score=51.15  Aligned_cols=25  Identities=16%  Similarity=0.264  Sum_probs=22.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|+|++|+|||||++.++.-+
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhhhc
Confidence            3579999999999999999998876

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=95.60  E-value=0.0058  Score=50.35  Aligned_cols=25  Identities=20%  Similarity=0.450  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||++.++.-+
T Consensus        31 Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           31 GALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3578999999999999999987654

>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*

Probab=95.58  E-value=0.017  Score=50.53  Aligned_cols=36  Identities=25%  Similarity=0.193  Sum_probs=28.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++++.|.||+||||+|..++..+...-..+..+.
T Consensus        26 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD   61 (349)
T 3ug7_A           26 TKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS   61 (349)
T ss_dssp             CEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred             CEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence            457778899999999999999998877655555554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=95.55  E-value=0.015  Score=50.62  Aligned_cols=35  Identities=26%  Similarity=0.315  Sum_probs=26.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      ...+++|.|++|+|||||...++..+......+.+
T Consensus        54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i   88 (337)
T 2qm8_A           54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAV   88 (337)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEE
Confidence            35689999999999999999998766543333333

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=95.55  E-value=0.0055  Score=51.45  Aligned_cols=24  Identities=21%  Similarity=0.272  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||++.++.-
T Consensus        37 Ge~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           37 GEMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             TCEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            357899999999999999998754

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=95.54  E-value=0.0061  Score=51.37  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||++.++.-
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            57899999999999999988753

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.53  E-value=0.013  Score=52.07  Aligned_cols=24  Identities=13%  Similarity=0.159  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++.|.|++|+|||||+.+++-..
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~  202 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTC  202 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHh
Confidence            578999999999999999987543

>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}

Probab=95.53  E-value=0.096  Score=46.98  Aligned_cols=24  Identities=21%  Similarity=0.134  Sum_probs=21.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ..++..|.|++|+|||++.++.+.
T Consensus       160 ~~~v~~I~G~aGsGKTt~I~~~~~  183 (446)
T 3vkw_A          160 SAKVVLVDGVPGCGKTKEILSRVN  183 (446)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHCC
T ss_pred             cccEEEEEcCCCCCHHHHHHHHhc
Confidence            467899999999999999988764

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.52  E-value=0.016  Score=50.56  Aligned_cols=35  Identities=29%  Similarity=0.313  Sum_probs=27.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      +..+|+|.|++|+|||||+..++..+......+..
T Consensus        55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v   89 (341)
T 2p67_A           55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV   89 (341)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence            45789999999999999999998876544333333

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=95.52  E-value=0.0078  Score=50.02  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||.+.++.-
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999874

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=95.51  E-value=0.014  Score=48.12  Aligned_cols=33  Identities=30%  Similarity=0.601  Sum_probs=26.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      |+|.|-||+||||++..++..+...-..+..+.
T Consensus         3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD   35 (254)
T 3kjh_A            3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD   35 (254)
T ss_dssp             EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred             EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence            556999999999999999998877654455544

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=95.50  E-value=0.016  Score=46.24  Aligned_cols=35  Identities=20%  Similarity=0.129  Sum_probs=27.1

Q ss_pred             eEEEEE-cCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIW-GIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++|+|+ +-||+||||++..++..+...-..+..+.
T Consensus         2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD   37 (206)
T 4dzz_A            2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVD   37 (206)
T ss_dssp             EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence            567777 67899999999999998876544555554

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=95.49  E-value=0.0074  Score=50.53  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        32 Ge~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           32 GDVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999998764

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=95.49  E-value=0.01  Score=46.76  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|++|+|||||+..+...
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999998764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.48  E-value=0.015  Score=53.11  Aligned_cols=29  Identities=17%  Similarity=0.086  Sum_probs=24.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      ..+|+++|++|+||||+++.+++.+...+
T Consensus        39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~   67 (469)
T 1bif_A           39 PTLIVMVGLPARGKTYISKKLTRYLNFIG   67 (469)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence            34789999999999999999998765444

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=95.47  E-value=0.0086  Score=45.54  Aligned_cols=22  Identities=41%  Similarity=0.655  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||||+..+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999999864

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=95.47  E-value=0.0079  Score=49.74  Aligned_cols=24  Identities=21%  Similarity=0.200  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        28 Ge~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           28 NSIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999998764

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.47  E-value=0.0069  Score=50.00  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||.+.++.-
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=95.46  E-value=0.0099  Score=46.01  Aligned_cols=24  Identities=25%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ....|+|.|.+|+|||||+..+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            456789999999999999999875

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=95.45  E-value=0.0083  Score=50.38  Aligned_cols=24  Identities=21%  Similarity=0.356  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||++.++.-
T Consensus        46 Ge~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           46 GEVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999998874

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=95.44  E-value=0.007  Score=50.53  Aligned_cols=23  Identities=22%  Similarity=0.174  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||.+.++.-
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=95.44  E-value=0.009  Score=45.68  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            35789999999999999999864

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=95.44  E-value=0.0061  Score=49.33  Aligned_cols=24  Identities=21%  Similarity=0.382  Sum_probs=20.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+++|.|+.|+|||||.+.++.-.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl~   59 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTYL   59 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            478999999999999999987643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=95.44  E-value=0.0071  Score=50.15  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||++.++.-
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999998764

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.43  E-value=0.0079  Score=52.30  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.++|.|++|+||||+++.++..+.
T Consensus        25 ~~i~l~G~~G~GKTTl~~~la~~l~   49 (359)
T 2ga8_A           25 VCVILVGSPGSGKSTIAEELCQIIN   49 (359)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHhC
Confidence            4589999999999999999988754

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.43  E-value=0.0095  Score=49.67  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+.++||+|+|||.+|..+++.+
T Consensus       105 n~~~l~GppgtGKt~~a~ala~~~  128 (267)
T 1u0j_A          105 NTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhh
Confidence            369999999999999999998864

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.42  E-value=0.011  Score=47.69  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|++|+|||||+..++..
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999999864

>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}

Probab=95.42  E-value=0.022  Score=49.30  Aligned_cols=36  Identities=22%  Similarity=0.232  Sum_probs=29.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++++.|-||+||||++..++..+.+.-..+..+.
T Consensus        19 ~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD   54 (329)
T 2woo_A           19 LKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS   54 (329)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred             CEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence            467788999999999999999998887655555554

>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14

Probab=95.42  E-value=0.021  Score=45.24  Aligned_cols=35  Identities=11%  Similarity=-0.211  Sum_probs=27.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .++.+++|+.|.||||.+...+.++..+-..+..+
T Consensus         8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~   42 (191)
T 1xx6_A            8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF   42 (191)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence            46899999999999999999999876544444443

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=95.41  E-value=0.0073  Score=49.44  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+++|.|+.|+|||||.+.++..+
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999987654

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=95.38  E-value=0.0085  Score=50.15  Aligned_cols=24  Identities=17%  Similarity=0.140  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||++.++.-
T Consensus        50 Gei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           50 GEVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHcC
Confidence            357899999999999999998764

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=95.36  E-value=0.013  Score=44.69  Aligned_cols=24  Identities=38%  Similarity=0.541  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..-|+|.|.+|+|||||+..+...
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            456899999999999999999864

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=95.35  E-value=0.0056  Score=50.84  Aligned_cols=25  Identities=24%  Similarity=0.296  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+++|.|+.|+|||||.+.++....
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl~~   51 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGMTS   51 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCC
Confidence            5789999999999999999876543

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.33  E-value=0.0088  Score=46.79  Aligned_cols=22  Identities=23%  Similarity=0.208  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ++.|+|.+|+|||++|.+++..
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCS
T ss_pred             CEEEECCCCCcHHHHHHHHHhc
Confidence            3789999999999999999755

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=95.33  E-value=0.008  Score=50.24  Aligned_cols=25  Identities=24%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||++.++.-+
T Consensus        46 Ge~~~i~G~nGsGKSTLl~~l~Gl~   70 (260)
T 2ghi_A           46 GTTCALVGHTGSGKSTIAKLLYRFY   70 (260)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccC
Confidence            3578999999999999999987643

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=95.33  E-value=0.008  Score=50.58  Aligned_cols=24  Identities=21%  Similarity=0.262  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||++.++.-
T Consensus        45 Ge~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           45 GKVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999998764

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=95.33  E-value=0.008  Score=50.10  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        41 Gei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           41 GEIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            357899999999999999998764

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=95.32  E-value=0.015  Score=47.40  Aligned_cols=26  Identities=12%  Similarity=0.093  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..+|+|.|+.|+||||+++.+++.+.
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg   39 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELG   39 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999998864

>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*

Probab=95.30  E-value=0.02  Score=53.81  Aligned_cols=37  Identities=27%  Similarity=0.231  Sum_probs=29.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..+++++.|.||+||||++..++..+.+.-..+..+.
T Consensus         7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd   43 (589)
T 1ihu_A            7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS   43 (589)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence            3578999999999999999999998776544455544

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=95.29  E-value=0.012  Score=49.55  Aligned_cols=23  Identities=22%  Similarity=0.540  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++|.|+.|+|||||.+.++...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~   26 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQ   26 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998754

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=95.29  E-value=0.012  Score=44.91  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+..+...
T Consensus         3 i~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            3 ILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            789999999999999999764

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=95.28  E-value=0.025  Score=46.46  Aligned_cols=37  Identities=22%  Similarity=0.205  Sum_probs=27.9

Q ss_pred             CceEEEEEc-CCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206            2 DTCKLGIWG-IGGVGKTAIAGAFFSKISRR-FEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G-~~GiGKTtLa~~~~~~~~~~-~~~~~~~~   38 (329)
                      ..++|+|++ -||+||||++..++..+... -..+..+.
T Consensus         3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD   41 (245)
T 3ea0_A            3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD   41 (245)
T ss_dssp             CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred             CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence            356777775 68999999999999998876 44455444

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.26  E-value=0.019  Score=51.47  Aligned_cols=34  Identities=15%  Similarity=0.055  Sum_probs=26.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .++.|+|+.|+|||||...++..+...-..+.+.
T Consensus       168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~  201 (418)
T 1p9r_A          168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTV  201 (418)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEE
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEe
Confidence            5799999999999999999998775543334443

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.25  E-value=0.01  Score=51.89  Aligned_cols=24  Identities=29%  Similarity=0.257  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.||.|+|||||.+.++.-
T Consensus        30 Ge~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           30 GEILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcC
Confidence            357899999999999999999864

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.25  E-value=0.0043  Score=51.94  Aligned_cols=25  Identities=20%  Similarity=0.147  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...|+|.|+.|+||||+++.+++.+
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999987765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=95.24  E-value=0.011  Score=45.24  Aligned_cols=23  Identities=30%  Similarity=0.458  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            7 FKVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35889999999999999998864

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=95.22  E-value=0.0089  Score=50.50  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||.+.++..
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            57899999999999999998764

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.22  E-value=0.013  Score=47.85  Aligned_cols=23  Identities=30%  Similarity=0.367  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++|.|++|+||||+++.+++.+
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             ceeeECCCCCCHHHHHHHHHHHh
Confidence            46899999999999999998876

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=95.22  E-value=0.011  Score=46.17  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|++|+|||||+..+...
T Consensus         8 ~ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            8 CKIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999999999864

>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A

Probab=95.21  E-value=0.019  Score=54.43  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=26.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+.+.|+|++|+|||+++..++..+.......+.++
T Consensus       195 ~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~  230 (624)
T 2gk6_A          195 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC  230 (624)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence            357889999999999999998887655334444444

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=95.21  E-value=0.0092  Score=50.08  Aligned_cols=24  Identities=21%  Similarity=0.117  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        33 Ge~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           33 GECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            357899999999999999998764

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.20  E-value=0.013  Score=46.26  Aligned_cols=23  Identities=17%  Similarity=0.374  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ...|+|.|.+|+|||||...+..
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~   45 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            46789999999999999999875

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=95.20  E-value=0.012  Score=46.28  Aligned_cols=23  Identities=39%  Similarity=0.619  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -.|+|.|.+|+|||||+..++..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35789999999999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.19  E-value=0.012  Score=45.00  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|++|+|||||+..+...
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999999864

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=95.19  E-value=0.012  Score=45.05  Aligned_cols=22  Identities=32%  Similarity=0.481  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      --|+|.|++|+|||||+..+..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            4 MKILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            3588999999999999999975

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=95.18  E-value=0.012  Score=46.20  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||||+..+...
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=95.18  E-value=0.012  Score=45.03  Aligned_cols=22  Identities=36%  Similarity=0.542  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|++|+|||||+..+...
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~   29 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVED   29 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5789999999999999999864

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=95.16  E-value=0.015  Score=44.95  Aligned_cols=24  Identities=46%  Similarity=0.625  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|.+|+|||||+..+...
T Consensus         9 ~~~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A            9 THKLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999999874

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=95.15  E-value=0.012  Score=45.41  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||...+...
T Consensus         8 ~~i~v~G~~~~GKSsli~~l~~~   30 (177)
T 1wms_A            8 FKVILLGDGGVGKSSLMNRYVTN   30 (177)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45899999999999999999763

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=95.15  E-value=0.015  Score=44.78  Aligned_cols=23  Identities=35%  Similarity=0.517  Sum_probs=20.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ..-|+|.|.+|+|||||+..+..
T Consensus         4 ~~ki~i~G~~~vGKSsl~~~l~~   26 (175)
T 2nzj_A            4 LYRVVLLGDPGVGKTSLASLFAG   26 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEEEECCCCccHHHHHHHHhc
Confidence            34689999999999999999875

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=95.15  E-value=0.016  Score=44.35  Aligned_cols=24  Identities=29%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|.+|+|||||+..+...
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~   30 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVG   30 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999999763

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=95.14  E-value=0.015  Score=45.05  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..-|+|.|++|+|||||+..+...
T Consensus         8 ~~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            8 ILKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            356899999999999999998764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=95.14  E-value=0.016  Score=44.02  Aligned_cols=24  Identities=38%  Similarity=0.639  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .--|+|.|++|+|||||+..+...
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~   26 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcC
Confidence            346899999999999999998763

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.12  E-value=0.022  Score=53.49  Aligned_cols=27  Identities=26%  Similarity=0.444  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+|+|+|++|+||||+++.+++.+..
T Consensus        52 g~lIvLtGlsGSGKSTlAr~La~~L~~   78 (630)
T 1x6v_B           52 GCTVWLTGLSGAGKTTVSMALEEYLVC   78 (630)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            468999999999999999999998743

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=95.11  E-value=0.015  Score=44.54  Aligned_cols=22  Identities=41%  Similarity=0.632  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      --|+|.|++|+|||||+..+..
T Consensus         3 ~ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            3 FKVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            4589999999999999999863

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=95.10  E-value=0.013  Score=46.37  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||...++..
T Consensus         7 ~kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            7 YRVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999998753

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=95.10  E-value=0.012  Score=45.54  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -.|+|.|.+|+|||||...++..
T Consensus         5 ~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            5 MKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45889999999999999999763

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=95.09  E-value=0.012  Score=45.01  Aligned_cols=21  Identities=43%  Similarity=0.575  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||||+..+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999998853

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.09  E-value=0.013  Score=46.05  Aligned_cols=22  Identities=41%  Similarity=0.691  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||+|+..+...
T Consensus        23 ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           23 NLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCcHHHHHHHHHhC
Confidence            5889999999999999998864

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=95.09  E-value=0.0082  Score=49.15  Aligned_cols=24  Identities=29%  Similarity=0.184  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+|+|.|+.|+||||+++.++..
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            468999999999999999988665

>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*

Probab=95.06  E-value=0.041  Score=48.13  Aligned_cols=36  Identities=19%  Similarity=0.191  Sum_probs=28.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh--cCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS--RRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~--~~~~~~~~~~   38 (329)
                      .+++++.|-||+||||++..++..+.  ..-..+..+.
T Consensus        18 ~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD   55 (354)
T 2woj_A           18 HKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIS   55 (354)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEE
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEE
Confidence            45777889999999999999999888  6555555555

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.05  E-value=0.013  Score=44.92  Aligned_cols=22  Identities=32%  Similarity=0.774  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      --|+|.|.+|+|||||+..+..
T Consensus         4 ~~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            4 YRVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHc
Confidence            4588999999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.04  E-value=0.014  Score=45.65  Aligned_cols=24  Identities=29%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.+|+|+.|+|||||+..++.-+
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l   50 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVL   50 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999986654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=95.04  E-value=0.014  Score=44.59  Aligned_cols=23  Identities=30%  Similarity=0.433  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus         7 ~~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            7 FKLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35789999999999999999863

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.04  E-value=0.011  Score=45.93  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||+|+..+...
T Consensus         9 ki~~vG~~~vGKTsli~~l~~~   30 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLTG   30 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999999864

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.03  E-value=0.013  Score=51.19  Aligned_cols=23  Identities=30%  Similarity=0.387  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||.+.++.-
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            57899999999999999999864

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.03  E-value=0.015  Score=45.61  Aligned_cols=24  Identities=25%  Similarity=0.526  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+.|+|.|.+|+|||||+..+...
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           23 KGEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcC
Confidence            357899999999999999998764

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=95.00  E-value=0.014  Score=47.25  Aligned_cols=20  Identities=35%  Similarity=0.469  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||+|+..+..
T Consensus        16 ivlvGd~~VGKTsLi~r~~~   35 (216)
T 4dkx_A           16 LVFLGEQSVGKTSLITRFMY   35 (216)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHh
Confidence            78899999999999999875

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=95.00  E-value=0.013  Score=51.57  Aligned_cols=24  Identities=17%  Similarity=0.131  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        29 Ge~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           29 GEFVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHcC
Confidence            357899999999999999999864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=94.97  E-value=0.016  Score=45.64  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..|+|.|++|+|||||...+...
T Consensus        24 ~ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           24 GKLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999998863

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=94.96  E-value=0.015  Score=44.90  Aligned_cols=23  Identities=39%  Similarity=0.427  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=94.96  E-value=0.015  Score=44.90  Aligned_cols=22  Identities=36%  Similarity=0.483  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .|+|.|.+|+|||||+..+...
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~   37 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYD   37 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999999853

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=94.95  E-value=0.015  Score=53.44  Aligned_cols=27  Identities=11%  Similarity=0.055  Sum_probs=24.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+|++.|++|+||||+++.+++.+..
T Consensus       395 ~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          395 GFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            368999999999999999999999864

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=94.94  E-value=0.02  Score=43.56  Aligned_cols=23  Identities=43%  Similarity=0.681  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||...+...
T Consensus         4 ~ki~v~G~~~~GKssli~~l~~~   26 (167)
T 1c1y_A            4 YKLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45889999999999999999863

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=94.94  E-value=0.015  Score=45.32  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            45889999999999999999864

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=94.94  E-value=0.017  Score=45.02  Aligned_cols=24  Identities=21%  Similarity=0.410  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|++|+|||||...+...
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999988643

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.93  E-value=0.016  Score=51.03  Aligned_cols=25  Identities=16%  Similarity=0.254  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..++|+|++|+|||||++.++..+.
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5789999999999999999988754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=94.92  E-value=0.016  Score=50.68  Aligned_cols=24  Identities=21%  Similarity=0.169  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           29 GEFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCEEEEEcCCCchHHHHHHHHHCC
Confidence            357899999999999999999864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=94.92  E-value=0.014  Score=45.69  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||||+..+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~   23 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTG   23 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            578999999999999999875

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=94.91  E-value=0.016  Score=45.47  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus        12 ~ki~v~G~~~~GKSsli~~l~~~   34 (195)
T 3bc1_A           12 IKFLALGDSGVGKTSVLYQYTDG   34 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            46889999999999999999863

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=94.90  E-value=0.017  Score=50.69  Aligned_cols=24  Identities=17%  Similarity=0.212  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        29 Ge~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           29 GEFMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCchHHHHHHHHhcC
Confidence            357899999999999999999864

>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A

Probab=94.89  E-value=0.031  Score=45.21  Aligned_cols=34  Identities=18%  Similarity=-0.031  Sum_probs=26.0

Q ss_pred             eEEEEEc-CCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            4 CKLGIWG-IGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         4 r~v~I~G-~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ++++|+| -||+||||++..++..+..+...+..+
T Consensus         2 k~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll~   36 (224)
T 1byi_A            2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGY   36 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            5777877 489999999999999887654444443

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=94.88  E-value=0.015  Score=44.92  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      --|+|.|.+|+|||||+..+..
T Consensus         7 ~ki~v~G~~~~GKssl~~~l~~   28 (178)
T 2hxs_A            7 LKIVVLGDGASGKTSLTTCFAQ   28 (178)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHG
T ss_pred             EEEEEECcCCCCHHHHHHHHHh
Confidence            3588999999999999999875

>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}

Probab=94.87  E-value=0.026  Score=49.77  Aligned_cols=37  Identities=16%  Similarity=0.223  Sum_probs=28.6

Q ss_pred             CceEEEEEc-CCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWG-IGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G-~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.++|+|+| -||+||||+|..++..+...-..+..+.
T Consensus       142 ~~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD  179 (373)
T 3fkq_A          142 KSSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLN  179 (373)
T ss_dssp             SCEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence            467888875 9999999999999998766544455554

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=94.87  E-value=0.016  Score=45.58  Aligned_cols=23  Identities=35%  Similarity=0.508  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           26 FKVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35899999999999999998863

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=94.86  E-value=0.02  Score=53.54  Aligned_cols=27  Identities=26%  Similarity=0.256  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+|+|+|++|+||||+++.+++.+..
T Consensus       396 ~~~I~l~GlsGSGKSTiA~~La~~L~~  422 (573)
T 1m8p_A          396 GFTIFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence            368999999999999999999988653

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=94.86  E-value=0.015  Score=51.17  Aligned_cols=23  Identities=22%  Similarity=0.169  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|+.|+|||||.+.++.-
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           30 EFMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCcHHHHHHHHHHcC
Confidence            57899999999999999999864

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=94.86  E-value=0.017  Score=45.02  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus         6 ~~i~~~G~~~~GKssl~~~l~~~   28 (186)
T 1mh1_A            6 IKCVVVGDGAVGKTCLLISYTTN   28 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999998763

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=94.85  E-value=0.017  Score=44.99  Aligned_cols=23  Identities=52%  Similarity=0.769  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35789999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.85  E-value=0.018  Score=45.34  Aligned_cols=22  Identities=36%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||||+..+...
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~   46 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADD   46 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4789999999999999999875

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=94.84  E-value=0.017  Score=50.76  Aligned_cols=24  Identities=25%  Similarity=0.180  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        37 Ge~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           37 GEFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            357899999999999999999863

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=94.83  E-value=0.012  Score=50.46  Aligned_cols=24  Identities=29%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|+|+.|+|||||++.++.-
T Consensus        80 Ge~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           80 GQTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CCEEEEECCCCchHHHHHHHHHcC
Confidence            357899999999999999988753

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.83  E-value=0.017  Score=44.79  Aligned_cols=23  Identities=35%  Similarity=0.354  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35789999999999999988753

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.82  E-value=0.024  Score=52.61  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=24.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+++|+|++|+|||||++.++..+...
T Consensus       369 G~iI~LiG~sGSGKSTLar~La~~L~~~  396 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALAARLMEM  396 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCChHHHHHHHHHHhhccc
Confidence            3589999999999999999999987653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=94.81  E-value=0.012  Score=46.62  Aligned_cols=21  Identities=43%  Similarity=0.656  Sum_probs=18.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~   24 (329)
                      ..|+|.|.+|+|||||+..+.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999999885

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.81  E-value=0.017  Score=46.08  Aligned_cols=23  Identities=35%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus        27 ~ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           27 FKIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            46899999999999999998764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=94.81  E-value=0.019  Score=46.12  Aligned_cols=24  Identities=17%  Similarity=0.166  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|.+|+|||||+..+...
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            456899999999999999999864

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=94.81  E-value=0.017  Score=45.06  Aligned_cols=22  Identities=36%  Similarity=0.557  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||||+..+...
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5789999999999999999863

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=94.79  E-value=0.018  Score=44.68  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus        13 ~ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           13 AKLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35889999999999999998864

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.79  E-value=0.018  Score=44.60  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus        11 ~~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           11 FKVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHhC
Confidence            35889999999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.78  E-value=0.017  Score=45.58  Aligned_cols=23  Identities=48%  Similarity=0.817  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus        29 ~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           29 VKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999999864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=94.78  E-value=0.022  Score=45.16  Aligned_cols=24  Identities=38%  Similarity=0.541  Sum_probs=20.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..-|+|.|.+|+|||||+..+...
T Consensus        14 ~~ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           14 LHKVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhC
Confidence            346899999999999999998763

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=94.78  E-value=0.017  Score=46.16  Aligned_cols=23  Identities=35%  Similarity=0.540  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999999874

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=94.77  E-value=0.02  Score=48.05  Aligned_cols=25  Identities=28%  Similarity=0.230  Sum_probs=21.7

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+.|+|.|.+|+|||||...+...
T Consensus         2 ~~~~i~lvG~~g~GKTTL~n~l~g~   26 (271)
T 3k53_A            2 VLKTVALVGNPNVGKTTIFNALTGL   26 (271)
T ss_dssp             CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhCC
Confidence            4568999999999999999998754

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=94.77  E-value=0.016  Score=49.20  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||.+.++.-+
T Consensus        64 Ge~~~i~G~NGsGKSTLlk~l~Gl~   88 (290)
T 2bbs_A           64 GQLLAVAGSTGAGKTSLLMMIMGEL   88 (290)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcCC
Confidence            3578999999999999999987643

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=94.75  E-value=0.015  Score=50.68  Aligned_cols=24  Identities=25%  Similarity=0.142  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        26 Ge~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           26 GEYFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCccHHHHHHHHHcC
Confidence            357899999999999999999864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=94.74  E-value=0.017  Score=46.58  Aligned_cols=21  Identities=33%  Similarity=0.586  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||+|+..++.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~   59 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAG   59 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            589999999999999998863

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.73  E-value=0.032  Score=51.65  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=26.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .++.|.|++|+|||||+..++......-..++++.
T Consensus       282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~  316 (525)
T 1tf7_A          282 SIILATGATGTGKTLLVSRFVENACANKERAILFA  316 (525)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence            47899999999999999999987654422344544

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=94.73  E-value=0.022  Score=44.61  Aligned_cols=24  Identities=29%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..-|+|.|.+|+|||||+..+...
T Consensus        20 ~~ki~v~G~~~~GKSsli~~l~~~   43 (189)
T 1z06_A           20 IFKIIVIGDSNVGKTCLTYRFCAG   43 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcC
Confidence            356899999999999999998763

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=94.72  E-value=0.018  Score=45.44  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999999874

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=94.71  E-value=0.019  Score=45.29  Aligned_cols=23  Identities=35%  Similarity=0.537  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35889999999999999999864

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=94.71  E-value=0.017  Score=44.81  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ...|+|.|.+|+|||||+..+..
T Consensus         6 ~~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            6 SRKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHc
Confidence            35689999999999999999985

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.70  E-value=0.015  Score=51.05  Aligned_cols=34  Identities=21%  Similarity=0.208  Sum_probs=25.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++|+|+.|+|||||++.++..+... .+.+.+.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~~~~-~g~I~ie  209 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEIPFD-QRLITIE  209 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTSCTT-SCEEEEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcCCCC-ceEEEEC
Confidence            478999999999999999998765432 3344443

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=94.70  E-value=0.048  Score=43.78  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=25.5

Q ss_pred             EEEE-EcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGI-WGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I-~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +|+| .+-||+||||++..++..+.... .+..+.
T Consensus         2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD   35 (209)
T 3cwq_A            2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLID   35 (209)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEE
T ss_pred             EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEE
Confidence            3444 57899999999999999887765 555554

>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}

Probab=94.70  E-value=0.023  Score=50.06  Aligned_cols=36  Identities=25%  Similarity=0.190  Sum_probs=29.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++++.|.||+||||++..++..+...-..+..+.
T Consensus         2 ~~i~~~~gkGG~GKTt~a~~la~~la~~g~~vllvd   37 (374)
T 3igf_A            2 ALILTFLGKSGVARTKIAIAAAKLLASQGKRVLLAG   37 (374)
T ss_dssp             CEEEEEECSBHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEeCCCCCcHHHHHHHHHHHHHHCCCCeEEEe
Confidence            368899999999999999999988776655555555

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=94.70  E-value=0.018  Score=45.67  Aligned_cols=22  Identities=27%  Similarity=0.362  Sum_probs=19.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .-|+|.|++|+|||||+..+..
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4588999999999999999864

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=94.69  E-value=0.019  Score=45.00  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus        23 ~ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           23 FKLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999864

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=94.69  E-value=0.024  Score=44.12  Aligned_cols=23  Identities=39%  Similarity=0.583  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            46889999999999999999863

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=94.67  E-value=0.52  Score=38.43  Aligned_cols=23  Identities=30%  Similarity=0.215  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      -+.|+|+.|.|||.++..++...
T Consensus       110 ~~ll~~~tG~GKT~~a~~~~~~~  132 (237)
T 2fz4_A          110 RGCIVLPTGSGKTHVAMAAINEL  132 (237)
T ss_dssp             EEEEEESSSTTHHHHHHHHHHHS
T ss_pred             CEEEEeCCCCCHHHHHHHHHHHc
Confidence            47899999999999999887765

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=94.66  E-value=0.02  Score=45.05  Aligned_cols=22  Identities=41%  Similarity=0.454  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||||+..+...
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~   44 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDK   44 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999998763

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=94.65  E-value=0.018  Score=50.96  Aligned_cols=24  Identities=29%  Similarity=0.576  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        47 Ge~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           47 GQRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCChHHHHHHHHhCC
Confidence            357899999999999999998863

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=94.65  E-value=0.02  Score=45.59  Aligned_cols=23  Identities=39%  Similarity=0.588  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..|+|.|.+|+|||||+..+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999764

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=94.64  E-value=0.022  Score=44.63  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            45889999999999999999863

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=94.64  E-value=0.024  Score=45.00  Aligned_cols=24  Identities=38%  Similarity=0.423  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..-|+|.|.+|+|||||+..+...
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhC
Confidence            346899999999999999999864

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=94.64  E-value=0.02  Score=45.10  Aligned_cols=23  Identities=39%  Similarity=0.445  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||||+..+...
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35889999999999999999874

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=94.64  E-value=0.018  Score=44.57  Aligned_cols=22  Identities=41%  Similarity=0.480  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .-|+|.|.+|+|||||+..+..
T Consensus        10 ~~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           10 FKLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEEECCTTSCHHHHHHHHCS
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999999864

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.63  E-value=0.021  Score=53.86  Aligned_cols=27  Identities=19%  Similarity=0.271  Sum_probs=23.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ..+.|+|++|+||||||+.++......
T Consensus        61 ~~vll~Gp~GtGKTtlar~ia~~l~~~   87 (604)
T 3k1j_A           61 RHVLLIGEPGTGKSMLGQAMAELLPTE   87 (604)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred             CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence            468999999999999999999876443

>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14

Probab=94.58  E-value=0.068  Score=43.41  Aligned_cols=108  Identities=10%  Similarity=-0.055  Sum_probs=54.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ..+.+++|+-|.||||.+...+.++..+-..++.+....+  .... ..    +.+..+.....-.... ..+.+ +.. 
T Consensus        19 g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D--~Ryg-~~----i~sr~G~~~~a~~i~~-~~di~-~~~-   88 (234)
T 2orv_A           19 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD--TRYS-SS----FCTHDRNTMEALPACL-LRDVA-QEA-   88 (234)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC--CCC----------------CEEEEESS-GGGGH-HHH-
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC--ccch-HH----HHhhcCCeeEEEecCC-HHHHH-HHh-
Confidence            3578999999999999999988887665444444432111  1122 22    2222221111000000 11111 122 


Q ss_pred             CceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           83 RKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      +.--+|++|++.-...+..+...+.+  .+..||+|.++.
T Consensus        89 ~~~dvViIDEaQF~~~v~el~~~l~~--~gi~VI~~GL~~  126 (234)
T 2orv_A           89 LGVAVIGIDEGQFFPDIVEFCEAMAN--AGKTVIVAALDG  126 (234)
T ss_dssp             TTCSEEEESSGGGCTTHHHHHHHHHH--TTCEEEEECCSB
T ss_pred             ccCCEEEEEchhhhhhHHHHHHHHHh--CCCEEEEEeccc
Confidence            22239999998311124444444432  467899999883

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=94.56  E-value=0.015  Score=50.94  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++.-
T Consensus        31 Ge~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           31 GERFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            357899999999999999999863

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=94.56  E-value=0.021  Score=45.21  Aligned_cols=24  Identities=21%  Similarity=0.271  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..-|+|.|.+|+|||||+..+...
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~~   51 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCKN   51 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999998753

>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A

Probab=94.55  E-value=0.28  Score=43.04  Aligned_cols=25  Identities=28%  Similarity=0.299  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      -|.|+|++|+||+.+|+.+...-..
T Consensus       154 ~vli~GesGtGKe~lAr~ih~~s~r  178 (368)
T 3dzd_A          154 PVLITGESGTGKEIVARLIHRYSGR  178 (368)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred             hheEEeCCCchHHHHHHHHHHhccc
Confidence            4779999999999999988765433

>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*

Probab=94.53  E-value=1.4  Score=38.91  Aligned_cols=22  Identities=32%  Similarity=0.341  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |.|+|++|+|||.+|+.+...-
T Consensus       163 vli~Ge~GtGK~~lAr~ih~~s  184 (387)
T 1ny5_A          163 VLITGESGVGKEVVARLIHKLS  184 (387)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEecCCCcCHHHHHHHHHHhc
Confidence            5899999999999999887653

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=94.53  E-value=0.022  Score=44.76  Aligned_cols=23  Identities=35%  Similarity=0.437  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      -|+|.|.+|+|||||++.+....
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            58899999999999996555443

>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}

Probab=94.52  E-value=0.046  Score=46.62  Aligned_cols=37  Identities=22%  Similarity=0.236  Sum_probs=29.2

Q ss_pred             CceEEEEEcC-CCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGI-GGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~-~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.++|.|+|. ||+||||++..++..+...-..+..+.
T Consensus       103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID  140 (299)
T 3cio_A          103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID  140 (299)
T ss_dssp             SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence            4578999986 799999999999998876544555554

>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*

Probab=94.52  E-value=0.047  Score=45.83  Aligned_cols=37  Identities=16%  Similarity=0.113  Sum_probs=29.2

Q ss_pred             CceEEEEEcC-CCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGI-GGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~-~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.++|.|++. ||+||||++..++..+...-..+..+.
T Consensus        81 ~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID  118 (271)
T 3bfv_A           81 AVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD  118 (271)
T ss_dssp             CCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence            4578899875 899999999999998876555555554

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=94.51  E-value=0.028  Score=43.98  Aligned_cols=23  Identities=35%  Similarity=0.361  Sum_probs=20.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ...|+|.|.+|+|||||...+..
T Consensus        16 ~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           16 EHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45689999999999999999874

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=94.51  E-value=0.023  Score=44.74  Aligned_cols=23  Identities=35%  Similarity=0.440  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus        17 ~ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           17 FKLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            46899999999999999999864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.50  E-value=0.018  Score=44.75  Aligned_cols=23  Identities=30%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ...|+|.|++|+|||||...+..
T Consensus        18 ~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           18 ELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCC
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            45789999999999999988753

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=94.50  E-value=0.036  Score=51.46  Aligned_cols=27  Identities=19%  Similarity=0.214  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..+|+++|++|+||||+++.+++.+..
T Consensus       372 ~~~I~l~G~~GsGKSTia~~La~~L~~  398 (546)
T 2gks_A          372 GFCVWLTGLPCAGKSTIAEILATMLQA  398 (546)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence            468999999999999999999987654

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=94.48  E-value=0.023  Score=44.61  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -.|+|.|.+|+|||||+..+...
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            36899999999999999999864

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=94.48  E-value=0.03  Score=49.20  Aligned_cols=30  Identities=17%  Similarity=0.027  Sum_probs=24.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEG   33 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~   33 (329)
                      ..+.|+|++|+|||||++.++..+..+++.
T Consensus       175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~  204 (422)
T 3ice_A          175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPD  204 (422)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHHHHHHHCTT
T ss_pred             cEEEEecCCCCChhHHHHHHHHHHhhcCCC
Confidence            468899999999999999998876554333

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=94.48  E-value=0.023  Score=45.27  Aligned_cols=23  Identities=35%  Similarity=0.447  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y            9 FKLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999998763

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=94.47  E-value=0.022  Score=45.26  Aligned_cols=23  Identities=30%  Similarity=0.323  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A            9 FKILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35899999999999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=94.46  E-value=0.025  Score=44.65  Aligned_cols=23  Identities=22%  Similarity=0.327  Sum_probs=20.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .+.|+|.|.+|+|||||+..+..
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~   39 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKP   39 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhc
Confidence            46789999999999999999865

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=94.46  E-value=0.014  Score=46.64  Aligned_cols=23  Identities=13%  Similarity=0.232  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ...|+|.|++|+|||||...++.
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g   48 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTN   48 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            35689999999999999998754

>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*

Probab=94.45  E-value=0.019  Score=51.56  Aligned_cols=24  Identities=13%  Similarity=0.239  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      +.|.|.+|+|||+|+.++++....
T Consensus       154 ~~Ifgg~G~GKt~L~~~Ia~~~~~  177 (465)
T 3vr4_D          154 LPVFSGSGLPHKELAAQIARQATV  177 (465)
T ss_dssp             CCEEECTTSCHHHHHHHHHHHCBC
T ss_pred             EEEeCCCCcChHHHHHHHHHHHHh
Confidence            578899999999999999887544

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=94.45  E-value=0.031  Score=46.43  Aligned_cols=37  Identities=22%  Similarity=0.258  Sum_probs=28.2

Q ss_pred             CceEEEEE-cCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIW-GIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.++|+|+ +-||+||||++..++..+...-..+..+.
T Consensus         5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD   42 (257)
T 1wcv_1            5 KVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVD   42 (257)
T ss_dssp             CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence            45678887 58899999999999998876544455544

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=94.42  E-value=0.016  Score=50.27  Aligned_cols=104  Identities=13%  Similarity=0.020  Sum_probs=54.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      ..++|+|+.|+|||||++.++..+... .+.+.+....+.... ...       .......   +........+...+..
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~-~~~-------~~i~~~~---ggg~~~r~~la~aL~~  239 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK-HHK-------NYTQLFF---GGNITSADCLKSCLRM  239 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS-SCS-------SEEEEEC---BTTBCHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc-cch-------hEEEEEe---CCChhHHHHHHHHhhh
Confidence            478999999999999999988765432 344444322111000 000       0000000   0011134455566677


Q ss_pred             ceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCch
Q 020206           84 KKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDK  122 (329)
Q Consensus        84 ~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~  122 (329)
                      .+-+|++|+....+..+ ++..+.  ..+..+++|+...
T Consensus       240 ~p~ilildE~~~~e~~~-~l~~~~--~g~~tvi~t~H~~  275 (330)
T 2pt7_A          240 RPDRIILGELRSSEAYD-FYNVLC--SGHKGTLTTLHAG  275 (330)
T ss_dssp             CCSEEEECCCCSTHHHH-HHHHHH--TTCCCEEEEEECS
T ss_pred             CCCEEEEcCCChHHHHH-HHHHHh--cCCCEEEEEEccc
Confidence            78899999997654443 333332  1122356666544

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=94.40  E-value=0.023  Score=45.16  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      --|+|.|.+|+|||||+..+..
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            3588999999999999999874

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=94.39  E-value=0.027  Score=46.22  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ...|+|.|.+|+|||||...+..
T Consensus        29 ~~~i~lvG~~g~GKStlin~l~g   51 (239)
T 3lxx_A           29 QLRIVLVGKTGAGKSATGNSILG   51 (239)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHcC
Confidence            45789999999999999999876

>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A

Probab=94.38  E-value=0.04  Score=53.62  Aligned_cols=36  Identities=22%  Similarity=0.230  Sum_probs=26.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .++..|+|++|+|||+++..++..+...-...+.+.
T Consensus       371 ~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~  406 (800)
T 2wjy_A          371 RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC  406 (800)
T ss_dssp             SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence            367899999999999999998887665333344443

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.36  E-value=0.025  Score=45.19  Aligned_cols=22  Identities=36%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .-|+|.|.+|+|||||+..+..
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHhc
Confidence            4689999999999999999876

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=94.36  E-value=0.025  Score=44.49  Aligned_cols=23  Identities=30%  Similarity=0.391  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||+|+..+...
T Consensus        19 ~ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           19 LKCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            36889999999999999999864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=94.36  E-value=0.024  Score=44.93  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      --|+|.|.+|+|||||+..+..
T Consensus        21 ~ki~~~G~~~~GKssl~~~l~~   42 (201)
T 2q3h_A           21 VKCVLVGDGAVGKTSLVVSYTT   42 (201)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999999875

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=94.35  E-value=0.019  Score=49.02  Aligned_cols=20  Identities=30%  Similarity=0.600  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|++|+|||||...++.
T Consensus        21 I~lvG~nG~GKSTLl~~L~g   40 (301)
T 2qnr_A           21 LMVVGESGLGKSTLINSLFL   40 (301)
T ss_dssp             EEEEEETTSSHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=94.33  E-value=0.028  Score=43.80  Aligned_cols=24  Identities=29%  Similarity=0.448  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|.+|+|||||+..+...
T Consensus        18 ~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           18 ELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999998753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=94.33  E-value=0.03  Score=44.15  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=19.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .--|+|.|++|+|||||+..+..
T Consensus        29 ~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           29 QMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCS
T ss_pred             ccEEEEECCCCCCHHHHHHHHHh
Confidence            34689999999999999998854

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=94.33  E-value=0.026  Score=45.20  Aligned_cols=23  Identities=35%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      --|+|.|.+|+|||+|+..+...
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~   32 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSN   32 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999998763

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=94.32  E-value=0.026  Score=45.11  Aligned_cols=23  Identities=30%  Similarity=0.468  Sum_probs=20.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..++..
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998853

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=94.32  E-value=0.05  Score=45.37  Aligned_cols=36  Identities=22%  Similarity=0.181  Sum_probs=26.8

Q ss_pred             CceEEEE-EcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGI-WGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I-~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++|+| .+-||+||||++..++..+. +-..+..+.
T Consensus        26 ~~~vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD   62 (267)
T 3k9g_A           26 KPKIITIASIKGGVGKSTSAIILATLLS-KNNKVLLID   62 (267)
T ss_dssp             CCEEEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred             CCeEEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEE
Confidence            3567777 45889999999999999888 544455544

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=94.31  E-value=0.021  Score=44.41  Aligned_cols=23  Identities=35%  Similarity=0.374  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -.|+|.|.+|+|||||...+...
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46889999999999999998753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=94.30  E-value=0.034  Score=43.79  Aligned_cols=22  Identities=32%  Similarity=0.717  Sum_probs=19.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      --|+|.|.+|+|||||+..+..
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            4689999999999999999986

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=94.30  E-value=0.032  Score=48.64  Aligned_cols=26  Identities=31%  Similarity=0.563  Sum_probs=23.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..++|.|+.|+|||||.+.++.....
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~~~~   97 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNGASA   97 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence            57899999999999999999988654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=94.30  E-value=0.026  Score=44.79  Aligned_cols=22  Identities=41%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||||+..+...
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~   48 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKD   48 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999998763

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=94.29  E-value=0.024  Score=45.56  Aligned_cols=22  Identities=36%  Similarity=0.527  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      --|+|.|.+|+|||||+..+..
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3588999999999999999875

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=94.29  E-value=0.026  Score=44.85  Aligned_cols=22  Identities=36%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .-|+|.|.+|+|||||+..+..
T Consensus        30 ~ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           30 FKLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhh
Confidence            4589999999999999999875

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=94.29  E-value=0.027  Score=44.94  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -.|+|.|.+|+|||||+..+...
T Consensus        31 ~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           31 IKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHHhC
Confidence            45789999999999999998863

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=94.28  E-value=0.025  Score=45.99  Aligned_cols=24  Identities=17%  Similarity=0.171  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|.+|+|||||+..++..
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999998753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=94.25  E-value=0.027  Score=45.30  Aligned_cols=22  Identities=32%  Similarity=0.274  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||||+..+...
T Consensus        29 ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           29 KLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5789999999999999999764

>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A

Probab=94.25  E-value=0.042  Score=52.31  Aligned_cols=27  Identities=22%  Similarity=0.179  Sum_probs=21.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ++..|+||||+|||+.+.++...+...
T Consensus       206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~  232 (646)
T 4b3f_X          206 ELAIIHGPPGTGKTTTVVEIILQAVKQ  232 (646)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CceEEECCCCCCHHHHHHHHHHHHHhC
Confidence            478899999999999887777654443

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.21  E-value=0.038  Score=57.67  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=30.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++.|+|++|+||||||.+++......-..++|++
T Consensus       383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis  418 (1706)
T 3cmw_A          383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID  418 (1706)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence            468999999999999999999988766656677776

>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}

Probab=94.21  E-value=0.044  Score=46.57  Aligned_cols=36  Identities=19%  Similarity=0.206  Sum_probs=26.7

Q ss_pred             ceEEEEEc---CCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWG---IGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G---~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .++++|.+   -||+||||++..++..+...-..+..+.
T Consensus        34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD   72 (298)
T 2oze_A           34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMID   72 (298)
T ss_dssp             CSCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CcEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEe
Confidence            35667775   8999999999999998765544455443

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=94.20  E-value=0.029  Score=47.92  Aligned_cols=24  Identities=21%  Similarity=0.344  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|.+|+|||||...+...
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~   31 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQ   31 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            457999999999999999999763

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=94.20  E-value=0.015  Score=45.31  Aligned_cols=23  Identities=39%  Similarity=0.436  Sum_probs=9.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-|+|.|.+|+|||||+..+...
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~   31 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSED   31 (183)
T ss_dssp             EEEEEECCCCC------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45899999999999999998753

>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}

Probab=94.17  E-value=0.026  Score=51.26  Aligned_cols=23  Identities=35%  Similarity=0.258  Sum_probs=17.9

Q ss_pred             eEEEEEcCCCCcHHHHHH-HHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAG-AFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~-~~~~~   26 (329)
                      ..+.|.|.+|+|||+|+. .+++.
T Consensus       176 QR~~I~g~~g~GKT~Lal~~I~~~  199 (515)
T 2r9v_A          176 QRELIIGDRQTGKTAIAIDTIINQ  199 (515)
T ss_dssp             CBEEEEEETTSSHHHHHHHHHHTT
T ss_pred             CEEEEEcCCCCCccHHHHHHHHHh
Confidence            346899999999999965 55554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=94.16  E-value=0.028  Score=44.47  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .-|+|.|.+|+|||+|+..+..
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~   42 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFH   42 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            4588999999999999886654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.15  E-value=0.037  Score=41.84  Aligned_cols=25  Identities=24%  Similarity=0.288  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+.+|+|+.|+|||++...++.-+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3578999999999999999876543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=94.12  E-value=0.027  Score=44.37  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||||+..+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999999874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=94.10  E-value=0.026  Score=51.26  Aligned_cols=25  Identities=24%  Similarity=0.232  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||++.++...
T Consensus       138 Ge~v~IvGpnGsGKSTLlr~L~Gl~  162 (460)
T 2npi_A          138 GPRVVIVGGSQTGKTSLSRTLCSYA  162 (460)
T ss_dssp             CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCcc
Confidence            3678999999999999999998754

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.10  E-value=0.04  Score=51.03  Aligned_cols=36  Identities=25%  Similarity=0.226  Sum_probs=24.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH-HHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFF-SKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~-~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|++|+|||||++.++ .-+...-...+++.
T Consensus        39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~   75 (525)
T 1tf7_A           39 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVT   75 (525)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEE
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEE
Confidence            3578999999999999999963 32222123455554

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=94.09  E-value=0.03  Score=47.86  Aligned_cols=21  Identities=29%  Similarity=0.311  Sum_probs=19.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~   24 (329)
                      .+++|.|++|+|||||...+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            578999999999999999987

>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*

Probab=94.04  E-value=0.043  Score=57.28  Aligned_cols=36  Identities=19%  Similarity=0.221  Sum_probs=29.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|.|++|+||||||.+++......-..+.|++
T Consensus       732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS  767 (1706)
T 3cmw_A          732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID  767 (1706)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEe
Confidence            358999999999999999999998766545567765

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=94.04  E-value=0.03  Score=48.88  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+++|.|++|+|||||+..++..
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~  238 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGL  238 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCC
T ss_pred             CEEEEECCCCccHHHHHHHHhcc
Confidence            47899999999999999988643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d2a5yb3	277	c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenor	1e-32

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  120 bits (301), Expect = 1e-32
 Identities = 42/239 (17%), Positives = 73/239 (30%), Gaps = 18/239 (7%)

Query: 2   DTCKLGIWGIGGVGKTAIAGAFFSK---ISRRFEGSYFAHNVREAEETGKLADLRKELLS 58
           D+  L + G  G GK+ IA    SK   +      S                     LL 
Sbjct: 43  DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLM 102

Query: 59  TLLNDGNMNKFPNIGL-------NFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFAS 111
               D  +N      +          +  + R   L VFDDV     I +          
Sbjct: 103 LKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRW------AQEL 156

Query: 112 GSRILITARDKQ-ALINCGVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAI 170
             R L+T RD + +       +  ++  L   +    L          +    ++ ++ I
Sbjct: 157 RLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEK-EEDVLNKTI 215

Query: 171 KYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEKNIF 229
           + + G P  L +  +    K  E      +KLE    + ++ +   SY  L    +   
Sbjct: 216 ELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQRCV 274

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	100.0
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	99.39
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	98.9
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	98.88
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	98.85
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	98.83
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	98.82
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	98.82
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	98.78
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	98.75
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	98.74
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.66
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	98.66
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	98.64
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	98.61
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	98.61
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	98.59
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	98.59
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	98.51
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	98.49
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	98.37
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	98.36
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	98.2
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	97.96
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.94
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.9
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.89
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.83
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.83
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.8
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.77
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.74
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.72
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.71
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.7
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.7
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.68
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.68
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.65
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.65
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.65
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.6
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.6
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.59
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.53
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.53
d1okkd2	207	GTPase domain of the signal recognition particle r	97.52
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.51
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.51
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.5
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	97.49
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.48
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.47
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.44
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.43
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.41
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.41
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.4
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.4
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.36
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.34
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.34
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.34
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.31
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	97.29
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.28
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.23
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.23
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	97.16
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	97.16
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.16
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	97.15
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.14
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	97.13
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.12
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.11
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.11
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	97.1
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	97.08
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.06
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.05
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.02
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.01
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.01
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.01
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.0
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	97.0
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.99
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.91
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.89
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	96.88
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.87
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.86
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	96.86
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.85
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.8
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.8
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.75
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.73
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.73
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.67
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	96.65
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.62
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.61
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.59
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.56
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.46
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.46
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.46
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.4
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.39
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.37
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	96.34
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.32
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	96.29
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	96.27
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.26
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.19
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.19
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.17
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.17
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.13
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.12
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	96.1
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.05
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	95.99
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	95.95
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	95.93
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.92
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	95.91
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	95.9
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	95.89
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.87
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	95.87
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.84
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.83
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.82
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.8
d1g2912	240	Maltose transport protein MalK, N-terminal domain	95.76
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.75
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.73
d1nrjb_	209	Signal recognition particle receptor beta-subunit	95.72
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	95.71
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.71
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.69
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.67
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.67
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.66
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	95.65
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	95.64
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	95.63
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.62
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	95.62
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.62
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	95.59
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	95.59
d2fh5b1	207	Signal recognition particle receptor beta-subunit	95.58
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	95.58
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	95.58
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.57
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	95.57
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	95.57
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.54
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.5
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.49
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	95.46
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.46
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	95.45
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	95.44
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	95.43
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.43
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.43
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.43
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	95.43
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.42
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.41
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	95.4
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.4
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.4
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.39
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.35
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.34
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.33
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	95.33
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.31
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.3
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.29
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	95.27
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.25
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	95.25
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.22
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.19
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.19
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.18
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.16
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.13
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.13
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.13
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.03
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.01
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	94.97
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.8
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	94.77
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	94.75
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	94.74
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	94.74
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	94.69
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	94.48
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	94.47
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	94.44
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.41
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	94.24
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	94.2
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	94.18
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.13
d1mkma1	75	Transcriptional regulator IclR, N-terminal domain	94.05
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	93.95
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.85
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.82
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	93.51
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	93.49
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	93.2
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.12
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.99
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	92.75
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.75
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.41
d1tuea_	205	Replication protein E1 helicase domain {Human papi	92.12
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	91.27
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.25
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	91.22
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	91.19
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	91.12
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	90.92
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	90.87
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	90.55
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.37
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	90.2
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.18
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	89.81
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	89.66
d1g5ta_	157	ATP:corrinoid adenosyltransferase CobA {Salmonella	89.64
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	88.53
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	88.23
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	88.18
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.78
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	87.45
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	87.08
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	85.99
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	85.9
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	85.89
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	84.38
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	84.11
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	84.0
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	83.55
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	83.46
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	81.41
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	81.14
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	80.09
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	80.04
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	80.02

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=100.00  E-value=3.1e-34  Score=244.31  Aligned_cols=220  Identities=19%  Similarity=0.189  Sum_probs=170.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH----HhcCCCceEEEeccchhhhcCChHHHHHHHHHHH---hcCCCC--CCCCCc
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK----ISRRFEGSYFAHNVREAEETGKLADLRKELLSTL---LNDGNM--NKFPNI   72 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~---~~~~~~--~~~~~~   72 (329)
                      +.++|+|+|+||+||||||++++++    ....|+.++|+.    ++.......+...+....   ......  +.....
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~f~~~~Wv~----vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  118 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLK----DSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHV  118 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEE----CCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhhhhhhhhcCceEEEEE----ecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhh
Confidence            5689999999999999999999987    345588899998    444444444444433332   222111  011111


Q ss_pred             -----chHHHHhhhcCceEEEEEecCCChhhHHHHhcccCCCCCCcEEEEEeCchhHHHhcCCC-eEEEecCCChhhhHH
Q 020206           73 -----GLNFQSKRLTRKKVLIVFDDVNHPRQIEFLIGNLDWFASGSRILITARDKQALINCGVN-KIYQIKELVHVDALK  146 (329)
Q Consensus        73 -----~~~~l~~~~~~~~~LlvlDdv~~~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~~~~-~~~~l~~l~~~e~~~  146 (329)
                           ....+.+.+.++++|+||||+|+.+.++.+..      .+++||+|||+..++..+... ..+++++|+.+||++
T Consensus       119 ~~~~~~~~~~~~~L~~kr~LlVLDDv~~~~~~~~~~~------~~srilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~  192 (277)
T d2a5yb3         119 TSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE------LRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYD  192 (277)
T ss_dssp             CHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH------TTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHH
T ss_pred             hhHHHHHHHHHHHhccCCeeEecchhhHHhhhhhhcc------cCceEEEEeehHHHHHhcCCCCceEECCCCCHHHHHH
Confidence                 22345566788999999999999998887643      388999999999887765543 679999999999999


Q ss_pred             HHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcCCCHHHHHHHHHhhccCChhhHHHHHHhhhcCCChhhH
Q 020206          147 LLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFRKRKEVWENAISKLEMVPQMEIQEVLKISYDGLDDKEK  226 (329)
Q Consensus       147 ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~~~~  226 (329)
                      ||...++.... .+..++.+++|+++|+|+||||..+|+.++..+.+.|....+.+.......+..++..||+.||++.|
T Consensus       193 Lf~~~~~~~~~-~~~~~~~~~~iv~~c~GlPLAl~~ig~~l~~k~~~~~~~~~~~L~~~~~~~v~~il~~sY~~L~~~lk  271 (277)
T d2a5yb3         193 FLEAYGMPMPV-GEKEEDVLNKTIELSSGNPATLMMFFKSCEPKTFEKMAQLNNKLESRGLVGVECITPYSYKSLAMALQ  271 (277)
T ss_dssp             HHHHTSCCCC---CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSSSHHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHHHH
T ss_pred             HHHHHhCCccC-chhhHHHHHHHHHHhCCCHHHHHHHHHHhccCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccHHHH
Confidence            99888755443 34567888999999999999999999999999999999988888766667788899999999999999


Q ss_pred             hHHHhh
Q 020206          227 NIFLDI  232 (329)
Q Consensus       227 ~~l~~l  232 (329)
                      .||.++
T Consensus       272 ~c~~~l  277 (277)
T d2a5yb3         272 RCVEVL  277 (277)
T ss_dssp             HHHHTS
T ss_pred             HHHHhC
Confidence            999754

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.39  E-value=2.2e-12  Score=108.25  Aligned_cols=180  Identities=12%  Similarity=0.079  Sum_probs=99.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccch-hhhcCChHHHHHHHHHHHhcC-----------C------
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVRE-AEETGKLADLRKELLSTLLND-----------G------   64 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~~~~~-----------~------   64 (329)
                      .+.|.|+|++|+|||+|++++++.....+   .|+..... .........+...+.......           .      
T Consensus        29 ~~~i~i~G~~G~GKTsLl~~~~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  105 (283)
T d2fnaa2          29 APITLVLGLRRTGKSSIIKIGINELNLPY---IYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIV  105 (283)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHTCCE---EEEEGGGGTTCSCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEE
T ss_pred             CCEEEEEcCCCCcHHHHHHHHHHHCCCCe---EEEEeccccccccccHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhccc
Confidence            46899999999999999999998875433   23321111 112233444444433332110           0      


Q ss_pred             ---------CCCCCCCcchHHHHh--hhcCceEEEEEecCCCh-----hhHHHHhcccCCCCCCcEEEEEeCchhHHHhc
Q 020206           65 ---------NMNKFPNIGLNFQSK--RLTRKKVLIVFDDVNHP-----RQIEFLIGNLDWFASGSRILITARDKQALINC  128 (329)
Q Consensus        65 ---------~~~~~~~~~~~~l~~--~~~~~~~LlvlDdv~~~-----~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~  128 (329)
                               ............+..  ...++++++++|+++..     ..+...+............+++++........
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~id~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~~  185 (283)
T d2fnaa2         106 IMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDY  185 (283)
T ss_dssp             ECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHH
T ss_pred             ccccccccccchhhhhHHHHHHHHHHhhcccccccccchhhhhcccchHHHHHHHHHHHHhhhhhhhhhccccchHHHHH
Confidence                     000000111222222  23467899999998321     11111211111113455556655544222111


Q ss_pred             ------------CCCeEEEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHHhhhcC
Q 020206          129 ------------GVNKIYQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILGRFLFR  189 (329)
Q Consensus       129 ------------~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~  189 (329)
                                  .....+.|.+++.+++.+++.+.........+.    ++.+++.++|+|.+|..++..+..
T Consensus       186 ~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~~----~~~i~~~~~G~P~~L~~~~~~~~~  254 (283)
T d2fnaa2         186 LRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKD----YEVVYEKIGGIPGWLTYFGFIYLD  254 (283)
T ss_dssp             TTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCC----HHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred             HHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCHHH----HHHHHHHhCCCHHHHHHHHHHHHh
Confidence                        123678999999999999998765322222222    778999999999999999876643

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.90  E-value=1.7e-08  Score=80.46  Aligned_cols=155  Identities=13%  Similarity=0.137  Sum_probs=91.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcCc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTRK   84 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~   84 (329)
                      .+.|+|++|+|||.|+..+++........++++.          ..++...+...+...         ....+.+.... 
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---------~~~~~~~~~~~-   97 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS----------ADDFAQAMVEHLKKG---------TINEFRNMYKS-   97 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE----------HHHHHHHHHHHHHHT---------CHHHHHHHHHT-
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhccCccceEEec----------hHHHHHHHHHHHHcc---------chhhHHHHHhh-
Confidence            3789999999999999999999887777677765          333344443333222         11222222322 


Q ss_pred             eEEEEEecCCCh---hhHH-HHhcccCC-CCCCcEEEEEeCchhHHHh---------cCCCeEEEecCCChhhhHHHHhh
Q 020206           85 KVLIVFDDVNHP---RQIE-FLIGNLDW-FASGSRILITARDKQALIN---------CGVNKIYQIKELVHVDALKLLNQ  150 (329)
Q Consensus        85 ~~LlvlDdv~~~---~~~~-~l~~~l~~-~~~~~~ilitsr~~~~~~~---------~~~~~~~~l~~l~~~e~~~ll~~  150 (329)
                      .-+|++||++..   ..++ .+...+.. ...+..+|+||+..+....         +.....+.++ ++.++-.+++++
T Consensus        98 ~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~  176 (213)
T d1l8qa2          98 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKE  176 (213)
T ss_dssp             CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCcchhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHH
Confidence            238999999532   2222 22222221 1357789999987642221         2355677886 577777788887


Q ss_pred             hhcCCCCCCCchHHHHHHHHHHhcCCchHHHHH
Q 020206          151 CAFGRDHPDASYIELTHEAIKYAQGVPIALKIL  183 (329)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~  183 (329)
                      .+.... .. ..+++++.|++.+ .++.-|.-+
T Consensus       177 ~a~~rg-l~-l~~~v~~yl~~~~-~~~R~L~~~  206 (213)
T d1l8qa2         177 KLKEFN-LE-LRKEVIDYLLENT-KNVREIEGK  206 (213)
T ss_dssp             HHHHTT-CC-CCHHHHHHHHHHC-SSHHHHHHH
T ss_pred             HHHHcC-CC-CCHHHHHHHHHhc-CcHHHHHHH
Confidence            773222 22 3356788888776 455544433

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=4.6e-08  Score=77.66  Aligned_cols=91  Identities=12%  Similarity=0.111  Sum_probs=65.3

Q ss_pred             ceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      ++-++|+|+++  +.+....++..+...+.+..+|++|++.. +... ......+.+.+++.++...++.+..   .   
T Consensus       108 ~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~~~~~~~~~~~L~~~~---~---  181 (207)
T d1a5ta2         108 GAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV---T---  181 (207)
T ss_dssp             SCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---C---
T ss_pred             ccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEecCCCCHHHHHHHHHHcC---C---
Confidence            45699999996  34556677777766667888888887753 2222 2455789999999999999997654   1   


Q ss_pred             CchHHHHHHHHHHhcCCchHHH
Q 020206          160 ASYIELTHEAIKYAQGVPIALK  181 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal~  181 (329)
                       ..++.+..+++.++|.|...-
T Consensus       182 -~~~~~~~~i~~~s~Gs~r~al  202 (207)
T d1a5ta2         182 -MSQDALLAALRLSAGSPGAAL  202 (207)
T ss_dssp             -CCHHHHHHHHHHTTTCHHHHH
T ss_pred             -CCHHHHHHHHHHcCCCHHHHH
Confidence             123558889999999987543

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.85  E-value=1.4e-08  Score=83.27  Aligned_cols=95  Identities=5%  Similarity=0.073  Sum_probs=58.9

Q ss_pred             ceEEEEEecCCCh--hhHHHHhcccCCCCCCcEEEEEeCchh-HHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNHP--RQIEFLIGNLDWFASGSRILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~~--~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.-++|+|+++..  .....+...+......+.+|+||.+.. ... .......+++.+++.++..+++...+..... .
T Consensus       131 ~~~iiiide~d~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~-~  209 (252)
T d1sxje2         131 RYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERI-Q  209 (252)
T ss_dssp             CCEEEEEECTTSSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC-E
T ss_pred             CceEEEeccccccccccchhhhcccccccccccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCC-C
Confidence            4458999999653  334444444333356677777776542 111 1133467899999999999999876522111 1


Q ss_pred             CchHHHHHHHHHHhcCCchH
Q 020206          160 ASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Pla  179 (329)
                      ...++.++.|+..+.|.+..
T Consensus       210 ~~~~~~l~~i~~~s~Gd~R~  229 (252)
T d1sxje2         210 LETKDILKRIAQASNGNLRV  229 (252)
T ss_dssp             ECCSHHHHHHHHHHTTCHHH
T ss_pred             CCcHHHHHHHHHHcCCcHHH
Confidence            11235678899999998764

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.83  E-value=3.3e-08  Score=79.62  Aligned_cols=160  Identities=16%  Similarity=0.147  Sum_probs=92.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC-CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      .+-+.++||+|+||||+|+.+++.+...+ ...++..+   .........+...+..........              .
T Consensus        36 ~~~~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n---~~~~~~~~~i~~~~~~~~~~~~~~--------------~   98 (224)
T d1sxjb2          36 MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN---ASDDRGIDVVRNQIKHFAQKKLHL--------------P   98 (224)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC---TTSCCSHHHHHTHHHHHHHBCCCC--------------C
T ss_pred             CCeEEEECCCCCCchhhHHHHHHHHhcccccccccccc---ccccCCceehhhHHHHHHHhhccC--------------C
Confidence            34578999999999999999998765432 22222221   222222222222222111111110              1


Q ss_pred             cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCC
Q 020206           82 TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDH  157 (329)
Q Consensus        82 ~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~  157 (329)
                      ..+.-++|+|+++.  ......+...+......+++++++.+.. ... .......+.+++++.++...++...+.....
T Consensus        99 ~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~  178 (224)
T d1sxjb2          99 PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDV  178 (224)
T ss_dssp             TTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC
T ss_pred             CcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhccc
Confidence            23456889999953  2233333333333345667777766542 111 2245578999999999999999876632221


Q ss_pred             CCCchHHHHHHHHHHhcCCchHHH
Q 020206          158 PDASYIELTHEAIKYAQGVPIALK  181 (329)
Q Consensus       158 ~~~~~~~~~~~i~~~~~g~Plal~  181 (329)
                        ...++.+..|+..++|.+...-
T Consensus       179 --~i~~~~l~~I~~~s~Gd~R~ai  200 (224)
T d1sxjb2         179 --KYTNDGLEAIIFTAEGDMRQAI  200 (224)
T ss_dssp             --CBCHHHHHHHHHHHTTCHHHHH
T ss_pred             --CCCHHHHHHHHHHcCCcHHHHH
Confidence              1335668999999999987543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=5e-08  Score=78.67  Aligned_cols=157  Identities=12%  Similarity=0.146  Sum_probs=92.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      +.+.++||+|+||||+|+.+++.+... +...+...+   ........ ..............              ...
T Consensus        36 ~~lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~---~~~~~~~~-~~~~~~~~~~~~~~--------------~~~   97 (227)
T d1sxjc2          36 PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELN---ASDDRGID-VVRNQIKDFASTRQ--------------IFS   97 (227)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEEC---TTSCCSHH-HHHTHHHHHHHBCC--------------SSS
T ss_pred             CeEEEECCCCCChhHHHHHHHHHhhcCCCcceeEEec---ccccCCee-eeecchhhcccccc--------------ccC
Confidence            457899999999999999999976432 222222211   11111121 11111111111110              112


Q ss_pred             CceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHH-hcCCCeEEEecCCChhhhHHHHhhhhcCCCCC
Q 020206           83 RKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGRDHP  158 (329)
Q Consensus        83 ~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~  158 (329)
                      .+..++|+|+++.  ......++..+......+.+++++.... ... .......+.+.+++.++...++.+.+..... 
T Consensus        98 ~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i-  176 (227)
T d1sxjc2          98 KGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKL-  176 (227)
T ss_dssp             CSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTC-
T ss_pred             CCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhhccccccccccccccccccccccc-
Confidence            3445899999953  3444455554444456777777776542 111 1245678999999999999999887643322 


Q ss_pred             CCchHHHHHHHHHHhcCCchHH
Q 020206          159 DASYIELTHEAIKYAQGVPIAL  180 (329)
Q Consensus       159 ~~~~~~~~~~i~~~~~g~Plal  180 (329)
                       ...++.++.|++.++|.....
T Consensus       177 -~i~~~~l~~i~~~s~Gd~R~a  197 (227)
T d1sxjc2         177 -KLSPNAEKALIELSNGDMRRV  197 (227)
T ss_dssp             -CBCHHHHHHHHHHHTTCHHHH
T ss_pred             -cCCHHHHHHHHHHcCCcHHHH
Confidence             233566899999999986433

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=6.4e-08  Score=78.72  Aligned_cols=95  Identities=15%  Similarity=0.112  Sum_probs=64.4

Q ss_pred             ceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchhHH-Hh-cCCCeEEEecCCChhhhHHHHhhhhcCCCCCC
Q 020206           84 KKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQAL-IN-CGVNKIYQIKELVHVDALKLLNQCAFGRDHPD  159 (329)
Q Consensus        84 ~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~~~-~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~~~  159 (329)
                      +.-++|+|+++.  .+....++..+...+.++.+|++|.+.... .. ......+.+.+++.++....+...+.....  
T Consensus       115 ~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~--  192 (239)
T d1njfa_         115 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHI--  192 (239)
T ss_dssp             SSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTC--
T ss_pred             CCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhcccccccCcHHHhhhHHHHHHhhhcc--
Confidence            456899999964  344455555555445677888777665211 11 245578999999999999988877632221  


Q ss_pred             CchHHHHHHHHHHhcCCchHH
Q 020206          160 ASYIELTHEAIKYAQGVPIAL  180 (329)
Q Consensus       160 ~~~~~~~~~i~~~~~g~Plal  180 (329)
                      ...++.++.|+..++|.+...
T Consensus       193 ~~~~~~l~~i~~~s~Gd~R~a  213 (239)
T d1njfa_         193 AHEPRALQLLARAAEGSLRDA  213 (239)
T ss_dssp             CBCHHHHHHHHHHTTTCHHHH
T ss_pred             CCCHHHHHHHHHHcCCCHHHH
Confidence            234567899999999999643

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.78  E-value=8e-08  Score=79.38  Aligned_cols=168  Identities=13%  Similarity=0.034  Sum_probs=92.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHHHhhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRL   81 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~~   81 (329)
                      ++.+.|+||+|+|||++++.+++.+.+.....+....   ..........+..+................ ....+.+..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN---GFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHL  119 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE---TTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEec---chhhhhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHH
Confidence            4679999999999999999999998766554443321   333455666666666665544332111111 222232222


Q ss_pred             --cCceEEEEEecCCChh--h---HHHHhcccCC-CCCCcEEEEEeCchhHHHhc-------CCCeEEEecCCChhhhHH
Q 020206           82 --TRKKVLIVFDDVNHPR--Q---IEFLIGNLDW-FASGSRILITARDKQALINC-------GVNKIYQIKELVHVDALK  146 (329)
Q Consensus        82 --~~~~~LlvlDdv~~~~--~---~~~l~~~l~~-~~~~~~ilitsr~~~~~~~~-------~~~~~~~l~~l~~~e~~~  146 (329)
                        ......+++|++++..  .   ...+...... ......++.++.........       .....+.+++++.+|..+
T Consensus       120 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~  199 (276)
T d1fnna2         120 RERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFD  199 (276)
T ss_dssp             HHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHH
T ss_pred             hhcccccccchhHHHHhhhhhhhhHHHHHhccccccccceEEeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHH
Confidence              2345677777774321  1   1222211111 12233455555544322211       123468899999999999


Q ss_pred             HHhhhhcCCCCCCCchHHHHHHHHHHh
Q 020206          147 LLNQCAFGRDHPDASYIELTHEAIKYA  173 (329)
Q Consensus       147 ll~~~~~~~~~~~~~~~~~~~~i~~~~  173 (329)
                      ++.++...........++.++.|++..
T Consensus       200 il~~r~~~~~~~~~~~~~~l~~ia~~~  226 (276)
T d1fnna2         200 ILLDRAKAGLAEGSYSEDILQMIADIT  226 (276)
T ss_dssp             HHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccHHHHHHHHHHh
Confidence            998765221222223456667776654

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=6.9e-08  Score=78.26  Aligned_cols=166  Identities=10%  Similarity=0.050  Sum_probs=92.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC---CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR---FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSK   79 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~   79 (329)
                      .+.+.++||+|+||||+++.+++.+...   ........    ............ ..........    .......+..
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~~~  103 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELN----ASDERGISIVRE-KVKNFARLTV----SKPSKHDLEN  103 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEEC----SSSCCCHHHHTT-HHHHHHHSCC----CCCCTTHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHHHHcCCcccccchhhee----ccccccchHHHH-HHHHHhhhhh----hhhhHHHHhh
Confidence            3458899999999999999999875321   12222222    111122222222 2222221111    1112222333


Q ss_pred             hhcCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHH-hcCCCeEEEecCCChhhhHHHHhhhhcCC
Q 020206           80 RLTRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALI-NCGVNKIYQIKELVHVDALKLLNQCAFGR  155 (329)
Q Consensus        80 ~~~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~-~~~~~~~~~l~~l~~~e~~~ll~~~~~~~  155 (329)
                      ....+.-++|+|+++.  ......+...+......+.+++++.+.. ... .......+.+.+++.++...++...+...
T Consensus       104 ~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e  183 (237)
T d1sxjd2         104 YPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQE  183 (237)
T ss_dssp             SCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTT
T ss_pred             ccccCceEEEEecccccCHHHHHHHhhccccccccccccccccccccccccccchhhhhccccccccccchhhhhhhhhh
Confidence            3334445799999853  2333333333333345666777665541 111 11234678999999999999998877433


Q ss_pred             CCCCCchHHHHHHHHHHhcCCchH
Q 020206          156 DHPDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       156 ~~~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                      ..  ...+++++.|++.++|.+.-
T Consensus       184 ~i--~i~~~~l~~ia~~s~gd~R~  205 (237)
T d1sxjd2         184 NV--KCDDGVLERILDISAGDLRR  205 (237)
T ss_dssp             TC--CCCHHHHHHHHHHTSSCHHH
T ss_pred             cC--cCCHHHHHHHHHHcCCCHHH
Confidence            22  23457789999999997653

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.74  E-value=4.9e-08  Score=78.92  Aligned_cols=157  Identities=17%  Similarity=0.142  Sum_probs=88.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRL   81 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~   81 (329)
                      .+-+.|+||+|+|||++|+.+++.+... +....+..+...............    ......              ...
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~~~~~~~~~~----~~~~~~--------------~~~  106 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVK----EFARTK--------------PIG  106 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHH----HHHHSC--------------CGG
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccchhHHHHHHH----HHHhhh--------------hcc
Confidence            4568899999999999999999876432 222222221111111111111111    111110              012


Q ss_pred             cCceEEEEEecCCC--hhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecCCChhhhHHHHhhhhcCCCC
Q 020206           82 TRKKVLIVFDDVNH--PRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKELVHVDALKLLNQCAFGRDH  157 (329)
Q Consensus        82 ~~~~~LlvlDdv~~--~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~l~~~e~~~ll~~~~~~~~~  157 (329)
                      ..++.++++|+++.  ......++..+......+.+|+++.... .... ......+.+.+.+..+...++...+.....
T Consensus       107 ~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i  186 (231)
T d1iqpa2         107 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL  186 (231)
T ss_dssp             GCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTC
T ss_pred             CCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCccccccccccchhhHHHHHHHHHHHhCC
Confidence            23567899999853  3333444444333344556666665442 1111 134467899999999999999887743222


Q ss_pred             CCCchHHHHHHHHHHhcCCchH
Q 020206          158 PDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       158 ~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                        ...++.++.|++.++|....
T Consensus       187 --~i~~~~l~~I~~~~~gdiR~  206 (231)
T d1iqpa2         187 --ELTEEGLQAILYIAEGDMRR  206 (231)
T ss_dssp             --EECHHHHHHHHHHHTTCHHH
T ss_pred             --CCCHHHHHHHHHHcCCCHHH
Confidence              23456789999999998653

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.66  E-value=5.7e-07  Score=73.72  Aligned_cols=156  Identities=15%  Similarity=0.105  Sum_probs=86.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-+.++||+|+|||++++.+++....    .++........... ...-...                 ....+.....
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~~----~~~~i~~~~l~~~~-~g~~~~~-----------------l~~~f~~A~~   95 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETGA----FFFLINGPEIMSKL-AGESESN-----------------LRKAFEEAEK   95 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTTC----EEEEECHHHHTTSC-TTHHHHH-----------------HHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhCC----eEEEEEchhhcccc-cccHHHH-----------------HHHHHHHHHh
Confidence            467999999999999999999987543    22322221111110 0000000                 1122233334


Q ss_pred             CceEEEEEecCCCh-------------hhHHHHhcccC--CCCCCcEEEEEeCchhHHHh-c----CCCeEEEecCCChh
Q 020206           83 RKKVLIVFDDVNHP-------------RQIEFLIGNLD--WFASGSRILITARDKQALIN-C----GVNKIYQIKELVHV  142 (329)
Q Consensus        83 ~~~~LlvlDdv~~~-------------~~~~~l~~~l~--~~~~~~~ilitsr~~~~~~~-~----~~~~~~~l~~l~~~  142 (329)
                      ..+++|++||++..             .....++..+.  ....+..+|.||........ .    +....+.++..+.+
T Consensus        96 ~~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~  175 (258)
T d1e32a2          96 NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDAT  175 (258)
T ss_dssp             TCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHH
T ss_pred             cCCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccccccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHH
Confidence            67899999999431             01222222211  12234445557765532221 1    35578999999999


Q ss_pred             hhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchH-HHHH
Q 020206          143 DALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIA-LKIL  183 (329)
Q Consensus       143 e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Pla-l~~~  183 (329)
                      +-.+++.....+......   .....|++.|.|+-.+ |..+
T Consensus       176 ~R~~il~~~l~~~~~~~~---~~~~~la~~t~G~s~adl~~l  214 (258)
T d1e32a2         176 GRLEILQIHTKNMKLADD---VDLEQVANETHGHVGADLAAL  214 (258)
T ss_dssp             HHHHHHHHTTTTSCBCTT---CCHHHHHHHCTTCCHHHHHHH
T ss_pred             HHHHHhhhhccCcccccc---cchhhhhhcccCCCHHHHHHH
Confidence            999999877633221111   1167899999886543 4444

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=98.66  E-value=3.3e-07  Score=76.04  Aligned_cols=170  Identities=12%  Similarity=0.082  Sum_probs=90.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC-----C-CceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR-----F-EGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQ   77 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l   77 (329)
                      ++.|+||+|+|||++++.+++.+.+.     . ....+..    .............+................ ....+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  123 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN----AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKAL  123 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE----GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHHHhhcccccCCceeeeec----cccccchhhHHHHHhhhcccccccccchHHHHHHHH
Confidence            45678999999999999999876432     1 1222322    334445556666666665544332111111 22333


Q ss_pred             Hhhh--cCceEEEEEecCCCh--------hhHHHH---hcccCCC--CCCcE-EEEEeCchhHH--------HhcCCCeE
Q 020206           78 SKRL--TRKKVLIVFDDVNHP--------RQIEFL---IGNLDWF--ASGSR-ILITARDKQAL--------INCGVNKI  133 (329)
Q Consensus        78 ~~~~--~~~~~LlvlDdv~~~--------~~~~~l---~~~l~~~--~~~~~-ilitsr~~~~~--------~~~~~~~~  133 (329)
                      ....  .+...++++|.++..        +....+   ...+...  ..... |++++......        ........
T Consensus       124 ~~~~~~~~~~~~~iide~d~l~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~  203 (287)
T d1w5sa2         124 VDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFK  203 (287)
T ss_dssp             HHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEE
T ss_pred             HHHHHhccCccccceeEEEEeccccccchhHHHHHHHHHHhcchhhcccceeEEeecccHHHHHHHHhhccchhccccee
Confidence            3222  345678888887321        122222   1111111  12223 34444333211        11234568


Q ss_pred             EEecCCChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHh------cCCch
Q 020206          134 YQIKELVHVDALKLLNQCAFGRDHPDASYIELTHEAIKYA------QGVPI  178 (329)
Q Consensus       134 ~~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~------~g~Pl  178 (329)
                      +.+++++.+|..+++..++..........+++++.|++.+      .|.|.
T Consensus       204 i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~ia~~~~~~~~~~gd~R  254 (287)
T d1w5sa2         204 LHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSAR  254 (287)
T ss_dssp             EECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHH
T ss_pred             eeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHHHHHHhccccCCCCHH
Confidence            8999999999999999876322222223456677777766      46664

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.64  E-value=1.6e-07  Score=76.80  Aligned_cols=163  Identities=13%  Similarity=0.069  Sum_probs=83.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+.+.++||+|+||||+|+.+++.+...   ..++. .   +..... ..+............  ...............
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~~---~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  121 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGYD---ILEQN-A---SDVRSK-TLLNAGVKNALDNMS--VVGYFKHNEEAQNLN  121 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCE---EEEEC-T---TSCCCH-HHHHHTGGGGTTBCC--STTTTTC----CCSS
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhh---hhccc-c---ccchhh-HHHHHHHHHHhhcch--hhhhhhhhhhccccc
Confidence            4679999999999999999999876422   23332 1   111111 122222222111110  000001111122234


Q ss_pred             CceEEEEEecCCC-----hhhHHHHhcccCCCCCCcEEEEEeCc--hh-HHHhcCCCeEEEecCCChhhhHHHHhhhhcC
Q 020206           83 RKKVLIVFDDVNH-----PRQIEFLIGNLDWFASGSRILITARD--KQ-ALINCGVNKIYQIKELVHVDALKLLNQCAFG  154 (329)
Q Consensus        83 ~~~~LlvlDdv~~-----~~~~~~l~~~l~~~~~~~~ilitsr~--~~-~~~~~~~~~~~~l~~l~~~e~~~ll~~~~~~  154 (329)
                      .+..++++|+++.     ...+..+.....  .....+++++..  .. ..........+.+.+++.++....+...+..
T Consensus       122 ~~~~vi~ide~~~~~~~~~~~~~~~~~~~~--~~~~~ii~i~~~~~~~~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~  199 (253)
T d1sxja2         122 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCR--KTSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR  199 (253)
T ss_dssp             TTSEEEEECSGGGCCTTSTTHHHHHHHHHH--HCSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ccceEEEeeeccccccchhhhhHHHhhhhc--ccccccccccccccccccccccceeeeeeccccchhHHHHHHHHHHHH
Confidence            4677899999732     122233332211  112234444332  21 2222245578999999999999998876622


Q ss_pred             CCCCCCchHHHHHHHHHHhcCCchH
Q 020206          155 RDHPDASYIELTHEAIKYAQGVPIA  179 (329)
Q Consensus       155 ~~~~~~~~~~~~~~i~~~~~g~Pla  179 (329)
                      ....  ..++.++.|++.++|....
T Consensus       200 e~i~--i~~~~l~~i~~~s~GDiR~  222 (253)
T d1sxja2         200 EKFK--LDPNVIDRLIQTTRGDIRQ  222 (253)
T ss_dssp             HTCC--CCTTHHHHHHHHTTTCHHH
T ss_pred             hCCC--CCHHHHHHHHHhCCCcHHH
Confidence            1111  1124588899999998743

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=98.61  E-value=2.9e-07  Score=74.83  Aligned_cols=150  Identities=14%  Similarity=0.114  Sum_probs=80.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-|.++||+|+|||+||+.+++....    .++..+...+.... +.+....                 ....+...-.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~~~~----~~~~i~~~~l~~~~-~g~~~~~-----------------l~~~f~~a~~   99 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGEARV----PFITASGSDFVEMF-VGVGAAR-----------------VRDLFETAKR   99 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHTTC----CEEEEEHHHHHHSC-TTHHHHH-----------------HHHHHHHHTT
T ss_pred             CceEEEecCCCCChhHHHHHHHHHcCC----CEEEEEhHHhhhcc-ccHHHHH-----------------HHHHHHHHHH
Confidence            456899999999999999999987642    22222111111100 0000000                 1112222234


Q ss_pred             CceEEEEEecCCCh------------h----hHHHHhcccCCC--CCCcEEEEEeCchhHH-Hhc----CCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHP------------R----QIEFLIGNLDWF--ASGSRILITARDKQAL-INC----GVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~------------~----~~~~l~~~l~~~--~~~~~ilitsr~~~~~-~~~----~~~~~~~l~~l  139 (329)
                      ..+++|+|||++..            .    .+..|+..+...  ..+..+|.||...... ..+    +....+.++..
T Consensus       100 ~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P  179 (247)
T d1ixza_         100 HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAP  179 (247)
T ss_dssp             SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSC
T ss_pred             cCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCc
Confidence            56899999998311            0    123333332211  2233334466544221 111    34568999999


Q ss_pred             ChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch
Q 020206          140 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      +.++-.++++....... ..+..    ...+++.|.|..-
T Consensus       180 ~~~eR~~il~~~l~~~~~~~~~~----~~~la~~t~g~s~  215 (247)
T d1ixza_         180 DVKGREQILRIHARGKPLAEDVD----LALLAKRTPGFVG  215 (247)
T ss_dssp             CHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCH
T ss_pred             CHHHHHHHHHHHhcccCCccccC----HHHHHHHCCCCCH
Confidence            99999999987773322 22222    6677888877643

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=2.5e-07  Score=75.64  Aligned_cols=129  Identities=17%  Similarity=0.168  Sum_probs=79.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEeccchhhh----cCChHHHHHHHHHHHhcCCCCCCCCCc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAHNVREAEE----TGKLADLRKELLSTLLNDGNMNKFPNI   72 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~   72 (329)
                      ..-+.++|++|+|||+++..+++++...      ....+|..+....-.    ...+...+..++.              
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~~~~vp~~l~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~--------------  104 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLK--------------  104 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHH--------------
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHHhCCcccccccceeEEeeechHhccCccchhHHHHHHHHHH--------------
Confidence            3567899999999999999999986442      234566654433221    2233333333322              


Q ss_pred             chHHHHhhhcCceEEEEEecCCC----------hhhHHHHhcccCCCCCCcEEEEEeCchhHHHhc-------CCCeEEE
Q 020206           73 GLNFQSKRLTRKKVLIVFDDVNH----------PRQIEFLIGNLDWFASGSRILITARDKQALINC-------GVNKIYQ  135 (329)
Q Consensus        73 ~~~~l~~~~~~~~~LlvlDdv~~----------~~~~~~l~~~l~~~~~~~~ilitsr~~~~~~~~-------~~~~~~~  135 (329)
                            ......++++++|+++.          ..+...++..... ....++|.+|..+......       ...+.+.
T Consensus       105 ------~~~~~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~-rg~i~vIgatT~eey~~~~e~d~al~rrF~~I~  177 (268)
T d1r6bx2         105 ------QLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS-SGKIRVIGSTTYQEFSNIFEKDRALARRFQKID  177 (268)
T ss_dssp             ------HHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS-SCCCEEEEEECHHHHHCCCCCTTSSGGGEEEEE
T ss_pred             ------HhhccCCceEEecchHHHhcCCCCCCccccHHHHhhHHHh-CCCCeEEEeCCHHHHHHHHhhcHHHHhhhcccc
Confidence                  22234678999999832          1234555543332 4466888888776544322       2336889


Q ss_pred             ecCCChhhhHHHHhhhh
Q 020206          136 IKELVHVDALKLLNQCA  152 (329)
Q Consensus       136 l~~l~~~e~~~ll~~~~  152 (329)
                      +++++.+++..++....
T Consensus       178 V~Eps~e~t~~IL~~~~  194 (268)
T d1r6bx2         178 ITEPSIEETVQIINGLK  194 (268)
T ss_dssp             CCCCCHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHhh
Confidence            99999999999997643

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=6.1e-07  Score=69.37  Aligned_cols=127  Identities=15%  Similarity=0.114  Sum_probs=73.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEeccchhhhcCChH-HHHHHHHHHHhcCCCCCCCCCcchH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAHNVREAEETGKLA-DLRKELLSTLLNDGNMNKFPNIGLN   75 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~   75 (329)
                      -.-+.++|++|+|||+++..+++++...      ....+|..+....-...... ++-..+                 ..
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~~~~vp~~L~~~~i~~ld~~~LiAg~~~rG~~E~rl-----------------~~  105 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERL-----------------KG  105 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHH-----------------HH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHHHhCCCCHHHcCceEEEeeHHHHhccCCccHHHHHHH-----------------HH
Confidence            3467899999999999999999987532      24556665444432222111 111111                 11


Q ss_pred             HHHhhh-cCceEEEEEecCCCh---------hhH-HHHhcccCCCCCCcEEEEEeCchhHHHhc-------CCCeEEEec
Q 020206           76 FQSKRL-TRKKVLIVFDDVNHP---------RQI-EFLIGNLDWFASGSRILITARDKQALINC-------GVNKIYQIK  137 (329)
Q Consensus        76 ~l~~~~-~~~~~LlvlDdv~~~---------~~~-~~l~~~l~~~~~~~~ilitsr~~~~~~~~-------~~~~~~~l~  137 (329)
                      .+.+.. ...++++++|+++..         .+. ..+.+.+.  ....++|.+|..+......       +..+.+.++
T Consensus       106 il~e~~~~~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~--rg~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~  183 (195)
T d1jbka_         106 VLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA--RGELHCVGATTLDEYRQYIEKDAALERRFQKVFVA  183 (195)
T ss_dssp             HHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH--TTSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECC
T ss_pred             HHHHHhcCCCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHh--CCCceEEecCCHHHHHHHHHcCHHHHhcCCEeecC
Confidence            122222 235789999998321         112 22223332  2456788777766433322       345789999


Q ss_pred             CCChhhhHHHH
Q 020206          138 ELVHVDALKLL  148 (329)
Q Consensus       138 ~l~~~e~~~ll  148 (329)
                      +.+.+++..++
T Consensus       184 Ep~~e~t~~IL  194 (195)
T d1jbka_         184 EPSVEDTIAIL  194 (195)
T ss_dssp             CCCHHHHHTTC
T ss_pred             CCCHHHHHHHh
Confidence            99999887765

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=8.1e-07  Score=72.48  Aligned_cols=148  Identities=14%  Similarity=0.102  Sum_probs=83.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhc--CChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEET--GKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKR   80 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~   80 (329)
                      ++-+.++||+|+|||++|+.+++.+...    ++..........  .....-                    ....+...
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~~~----~~~i~~~~l~~~~~g~~~~~--------------------l~~~f~~A  100 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAKVP----FFTISGSDFVEMFVGVGASR--------------------VRDMFEQA  100 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCC----EEEECSCSSTTSCCCCCHHH--------------------HHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcCCC----EEEEEhHHhhhcchhHHHHH--------------------HHHHHHHH
Confidence            5678999999999999999999887432    222222111110  000111                    12223333


Q ss_pred             hcCceEEEEEecCCC-------------hh---hHHHHhcccCC--CCCCcEEEEEeCchhHH-Hh----cCCCeEEEec
Q 020206           81 LTRKKVLIVFDDVNH-------------PR---QIEFLIGNLDW--FASGSRILITARDKQAL-IN----CGVNKIYQIK  137 (329)
Q Consensus        81 ~~~~~~LlvlDdv~~-------------~~---~~~~l~~~l~~--~~~~~~ilitsr~~~~~-~~----~~~~~~~~l~  137 (329)
                      -...+++|++||++.             ..   .+..++..+..  ...+..+|.||...... ..    .+....+.++
T Consensus       101 ~~~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~  180 (256)
T d1lv7a_         101 KKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVG  180 (256)
T ss_dssp             HTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECC
T ss_pred             HHcCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECC
Confidence            346789999999831             01   12333333321  12233445566654222 11    1345789999


Q ss_pred             CCChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch
Q 020206          138 ELVHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       138 ~l~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      ..+.++-.+++........ ..+.+    ...+++.+.|..-
T Consensus       181 ~P~~~~R~~il~~~l~~~~~~~~~~----~~~la~~t~G~s~  218 (256)
T d1lv7a_         181 LPDVRGREQILKVHMRRVPLAPDID----AAIIARGTPGFSG  218 (256)
T ss_dssp             CCCHHHHHHHHHHHHTTSCBCTTCC----HHHHHHTCTTCCH
T ss_pred             CcCHHHHHHHHHHhccCCCcCcccC----HHHHHHhCCCCCH
Confidence            9999998999987763322 12222    6678888888653

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.51  E-value=4.9e-07  Score=74.40  Aligned_cols=150  Identities=13%  Similarity=0.078  Sum_probs=82.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-|.++||+|+|||+||+.++..+..    .++.........                 .... .........+...-.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~~~~----~~~~~~~~~l~~-----------------~~~~-~~~~~l~~~f~~A~~   98 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANECQA----NFISIKGPELLT-----------------MWFG-ESEANVREIFDKARQ   98 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHHTTC----EEEEECHHHHHT-----------------SCTT-THHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHHhCC----cEEEEEHHHhhh-----------------cccc-chHHHHHHHHHHHHh
Confidence            456899999999999999999998743    233332111111                 0000 000001222333334


Q ss_pred             CceEEEEEecCCCh------------h----hHHHHhcccCCC--CCCcEEEEEeCchhHH-Hhc----CCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHP------------R----QIEFLIGNLDWF--ASGSRILITARDKQAL-INC----GVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~------------~----~~~~l~~~l~~~--~~~~~ilitsr~~~~~-~~~----~~~~~~~l~~l  139 (329)
                      ..+++|+|||++..            .    ....++..+...  .++..+|.||...... ..+    .....+.++..
T Consensus        99 ~~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p  178 (265)
T d1r7ra3          99 AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLP  178 (265)
T ss_dssp             TCSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCC
T ss_pred             cCCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecch
Confidence            57899999998421            0    124444444322  2234455566544222 111    34568899999


Q ss_pred             ChhhhHHHHhhhhcCCC-CCCCchHHHHHHHHHHhcCCch
Q 020206          140 VHVDALKLLNQCAFGRD-HPDASYIELTHEAIKYAQGVPI  178 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~-~~~~~~~~~~~~i~~~~~g~Pl  178 (329)
                      +.++-.++++....... ..+..    ...|++.+.|...
T Consensus       179 ~~~~R~~il~~~l~~~~~~~~~~----l~~la~~t~g~s~  214 (265)
T d1r7ra3         179 DEKSRVAILKANLRKSPVAKDVD----LEFLAKMTNGFSG  214 (265)
T ss_dssp             CCHHHHHHHHHHTTCC----CCC----CHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHhccCCchhhhh----HHHHHhcCCCCCH
Confidence            99999999987663211 11112    6778888888654

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=98.49  E-value=2.3e-06  Score=69.06  Aligned_cols=150  Identities=12%  Similarity=0.080  Sum_probs=82.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      .+-+.++||+|+|||++|+.+++.+...+   ...+    ........++.. +                    +.  ..
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~~---~~~~----~~~~~~~~~~~~-~--------------------~~--~~   84 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTNI---HVTS----GPVLVKQGDMAA-I--------------------LT--SL   84 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCCE---EEEE----TTTCCSHHHHHH-H--------------------HH--HC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCCc---cccc----CcccccHHHHHH-H--------------------HH--hh
Confidence            35688999999999999999998875432   1222    111111112111 1                    11  12


Q ss_pred             CceEEEEEecCCChh--h---HHHHhcc---------------cCCCCCCcEEEEEeCchh-H--HHhcCCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHPR--Q---IEFLIGN---------------LDWFASGSRILITARDKQ-A--LINCGVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~--~---~~~l~~~---------------l~~~~~~~~ilitsr~~~-~--~~~~~~~~~~~l~~l  139 (329)
                      .++..+++|+++...  .   +...+..               +....+.+.+|++|.+.. .  .........+.++..
T Consensus        85 ~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~  164 (238)
T d1in4a2          85 ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFY  164 (238)
T ss_dssp             CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCC
T ss_pred             ccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccCCCCeEEEEecCCCccccccceeeeeEEEEecCC
Confidence            344567778774321  1   1111111               000123445555555442 1  111234456789999


Q ss_pred             ChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          140 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      +.++...++.........  ...++.+..+++.++|.+..+..+.
T Consensus       165 ~~~~~~~~l~~~~~~~~~--~~~~~~l~~i~~~s~gd~R~ai~~l  207 (238)
T d1in4a2         165 TVKELKEIIKRAASLMDV--EIEDAAAEMIAKRSRGTPRIAIRLT  207 (238)
T ss_dssp             CHHHHHHHHHHHHHHTTC--CBCHHHHHHHHHTSTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHhhhhccc--hhhHHHHHHHHHhCCCCHHHHHHHH
Confidence            999999999877632222  2345668899999999887665443

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.37  E-value=2.4e-06  Score=69.30  Aligned_cols=27  Identities=22%  Similarity=0.134  Sum_probs=23.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .+-|.++||+|+|||++|+.+++....
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~   66 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNF   66 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccc
Confidence            345899999999999999999987653

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=98.36  E-value=2e-06  Score=69.51  Aligned_cols=151  Identities=13%  Similarity=0.069  Sum_probs=82.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLT   82 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (329)
                      ++-+.++||+|+|||++|+.+++.+...+   .+.+    ...........                     ..+.+.. 
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~~~---~~~~----~~~~~~~~~~~---------------------~~~~~~~-   85 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGVNL---RVTS----GPAIEKPGDLA---------------------AILANSL-   85 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTCCE---EEEE----TTTCCSHHHHH---------------------HHHHTTC-
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCe---Eecc----CCccccchhhH---------------------HHHHhhc-
Confidence            45688999999999999999998765332   2222    11111111111                     1111122 


Q ss_pred             CceEEEEEecCCCh--hhHHHHhccc--------C----------CCCCCcEEEEEeCchh--H-HHhcCCCeEEEecCC
Q 020206           83 RKKVLIVFDDVNHP--RQIEFLIGNL--------D----------WFASGSRILITARDKQ--A-LINCGVNKIYQIKEL  139 (329)
Q Consensus        83 ~~~~LlvlDdv~~~--~~~~~l~~~l--------~----------~~~~~~~ilitsr~~~--~-~~~~~~~~~~~l~~l  139 (329)
                      +.+.++++|+++..  ..-..+...+        .          ...+...++.++.+..  . .........+.+...
T Consensus        86 ~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~  165 (239)
T d1ixsb2          86 EEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY  165 (239)
T ss_dssp             CTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEECCCCEEEEEESCCSSCSCGGGGGCSEEEECCCC
T ss_pred             cCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCCCCEEEEeeccCcccccchhhcccceeeEeecc
Confidence            23446778988432  1111111100        0          0122344554443321  1 111234567888999


Q ss_pred             ChhhhHHHHhhhhcCCCCCCCchHHHHHHHHHHhcCCchHHHHHH
Q 020206          140 VHVDALKLLNQCAFGRDHPDASYIELTHEAIKYAQGVPIALKILG  184 (329)
Q Consensus       140 ~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~  184 (329)
                      +.++...++...+.....  ....+....|++.+.|.+.....+.
T Consensus       166 ~~~~~~~i~~~~~~~~~i--~~~~~~l~~ia~~s~gd~R~a~~~l  208 (239)
T d1ixsb2         166 TPEELAQGVMRDARLLGV--RITEEAALEIGRRSRGTMRVAKRLF  208 (239)
T ss_dssp             CHHHHHHHHHHHHGGGCC--CBCHHHHHHHHHHTTSSHHHHHHHH
T ss_pred             ChhhhhHHHHHHHHHhCC--ccchHHHHHHHHHcCCCHHHHHHHH
Confidence            999999888876633222  2345679999999999887654443

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=98.20  E-value=5.9e-06  Score=71.20  Aligned_cols=126  Identities=14%  Similarity=0.148  Sum_probs=71.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcC------CCceEEEeccchhhh----cCChHHHHHHHHHHHhcCCCCCCCCCcch
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRR------FEGSYFAHNVREAEE----TGKLADLRKELLSTLLNDGNMNKFPNIGL   74 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~------~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   74 (329)
                      -+.++|++|+|||+++..+++++...      .+..+|..+.+.+-.    ...+..-+..++..               
T Consensus        45 n~llvG~~GvGKtaiv~~la~~i~~~~vp~~l~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~---------------  109 (387)
T d1qvra2          45 NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQE---------------  109 (387)
T ss_dssp             CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHH---------------
T ss_pred             CCeEECCCCCCHHHHHHHHHHHHHhCCCCHHHcCceEEEeeHhhhhcccCcchhHHHHHHHHHHH---------------
Confidence            45788999999999999999876433      245677665543322    12233333322222               


Q ss_pred             HHHHhhhc-CceEEEEEecCCCh---------hhH-HHHhcccCCCCCCcEEEEEeCchhHHHh------cCCCeEEEec
Q 020206           75 NFQSKRLT-RKKVLIVFDDVNHP---------RQI-EFLIGNLDWFASGSRILITARDKQALIN------CGVNKIYQIK  137 (329)
Q Consensus        75 ~~l~~~~~-~~~~LlvlDdv~~~---------~~~-~~l~~~l~~~~~~~~ilitsr~~~~~~~------~~~~~~~~l~  137 (329)
                           ... ..+++|++|+++..         .+. ..|.+.+.  ....++|-+|..+..-..      .+..+.+.++
T Consensus       110 -----~~~~~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~--rg~~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~  182 (387)
T d1qvra2         110 -----VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA--RGELRLIGATTLDEYREIEKDPALERRFQPVYVD  182 (387)
T ss_dssp             -----HHTTCSSEEEEECCC-------------------HHHHH--TTCCCEEEEECHHHHHHHTTCTTTCSCCCCEEEC
T ss_pred             -----hccCCCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHh--CCCcceeeecCHHHHHHhcccHHHHHhcccccCC
Confidence                 222 34789999999432         112 22222222  245577777765543221      1244789999


Q ss_pred             CCChhhhHHHHhhhh
Q 020206          138 ELVHVDALKLLNQCA  152 (329)
Q Consensus       138 ~l~~~e~~~ll~~~~  152 (329)
                      +.+.+++..+++...
T Consensus       183 ep~~~~~~~il~~~~  197 (387)
T d1qvra2         183 EPTVEETISILRGLK  197 (387)
T ss_dssp             CCCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHH
Confidence            999999999987543

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.96  E-value=3.2e-05  Score=60.17  Aligned_cols=117  Identities=9%  Similarity=-0.000  Sum_probs=70.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhc---CCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISR---RFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQS   78 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~   78 (329)
                      .++.+.++|++|+|||++|..+++.+..   .++...++..-   ...-.+.++ +.+...+....              
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~---~~~I~Id~I-R~i~~~~~~~~--------------   75 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPE---GENIGIDDI-RTIKDFLNYSP--------------   75 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCS---SSCBCHHHH-HHHHHHHTSCC--------------
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCC---cCCCCHHHH-HHHHHHHhhCc--------------
Confidence            4678999999999999999999987643   24455555410   011233333 23433332221              


Q ss_pred             hhhcCceEEEEEecCC--ChhhHHHHhcccCCCCCCcEEEEEeCchh-HHHh-cCCCeEEEecC
Q 020206           79 KRLTRKKVLIVFDDVN--HPRQIEFLIGNLDWFASGSRILITARDKQ-ALIN-CGVNKIYQIKE  138 (329)
Q Consensus        79 ~~~~~~~~LlvlDdv~--~~~~~~~l~~~l~~~~~~~~ilitsr~~~-~~~~-~~~~~~~~l~~  138 (329)
                        ..+++-++|+|+++  +.+....++..+.+.+++..+|++|.+.. +... ....+.+.+..
T Consensus        76 --~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~  137 (198)
T d2gnoa2          76 --ELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNV  137 (198)
T ss_dssp             --SSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCC
T ss_pred             --ccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCC
Confidence              12344489999995  45667777777766667777777666542 2222 23445666654

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.94  E-value=9.2e-05  Score=56.21  Aligned_cols=25  Identities=32%  Similarity=0.534  Sum_probs=22.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      |+|+|++|+|||||++.++..+...
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l~~~   27 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERLGKR   27 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred             EEEECCCCcHHHHHHHHHHhcCCCC
Confidence            7899999999999999999977543

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.90  E-value=5.2e-06  Score=62.92  Aligned_cols=30  Identities=20%  Similarity=0.190  Sum_probs=26.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE   32 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~   32 (329)
                      .|+++|+|++|+|||||+.++++.+..+.-
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~   31 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPALCARGI   31 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence            489999999999999999999998766543

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=4.3e-06  Score=64.26  Aligned_cols=29  Identities=21%  Similarity=0.101  Sum_probs=25.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFE   32 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~   32 (329)
                      |.|+|+|++|+|||||++++++.+..+..
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~   30 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSGV   30 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence            67999999999999999999998865543

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.83  E-value=6.9e-06  Score=62.78  Aligned_cols=36  Identities=19%  Similarity=0.155  Sum_probs=28.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCC-CceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRF-EGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~-~~~~~~   37 (329)
                      ...+|.|+|++|+||||+|+.+++.+...+ ....+.
T Consensus         5 ~g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~   41 (183)
T d1m8pa3           5 QGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLL   41 (183)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhh
Confidence            356899999999999999999999886543 333333

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.83  E-value=4.6e-06  Score=64.16  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=23.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++.|+|.|++|+||||||+.+++.+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            57899999999999999999998763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.80  E-value=5.6e-06  Score=63.09  Aligned_cols=28  Identities=25%  Similarity=0.266  Sum_probs=25.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      |..++|+|+|++|+||||+|+.+++.+.
T Consensus         1 M~~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           1 MTTRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4678999999999999999999988864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=5.1e-06  Score=62.50  Aligned_cols=26  Identities=19%  Similarity=0.309  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      -+.|+|+|++|+||||+|+.+++.+.
T Consensus         2 ~k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           2 KRNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            35789999999999999999999863

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.74  E-value=7.8e-06  Score=62.03  Aligned_cols=24  Identities=25%  Similarity=0.291  Sum_probs=22.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++|+|+|++|+||||+|+.+++.+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            689999999999999999998765

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.72  E-value=9.8e-06  Score=60.19  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=20.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ++|+|+|++|+||||+|++++..
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            58899999999999999988654

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.71  E-value=1.7e-05  Score=60.83  Aligned_cols=35  Identities=14%  Similarity=0.158  Sum_probs=28.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .++|+|.|++|+||||+++.+++.+..........
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~   35 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMV   35 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            47999999999999999999999987665444443

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=1e-05  Score=62.70  Aligned_cols=35  Identities=23%  Similarity=0.316  Sum_probs=29.4

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+|+++|++|+||||+|+.+++.+...+....++.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~   54 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD   54 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchh
Confidence            57889999999999999999998877666555554

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.70  E-value=1e-05  Score=61.36  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+.|+|+|++|+||||+|+.+++++.
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHC
Confidence            46788999999999999999998763

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=0.0001  Score=55.94  Aligned_cols=25  Identities=16%  Similarity=0.235  Sum_probs=21.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+.+|+++|++|+||||+|++++..
T Consensus        13 ~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          13 NPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            5679999999999999999987653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.68  E-value=2.4e-05  Score=65.51  Aligned_cols=26  Identities=31%  Similarity=0.322  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++-+.++||+|+|||.||+.+++...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccc
Confidence            35688999999999999999999764

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.65  E-value=1.6e-05  Score=61.78  Aligned_cols=26  Identities=15%  Similarity=0.165  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++++|+|.|++|+||||+|+.+++.+
T Consensus         5 kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           5 KPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999998876

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.7e-05  Score=60.04  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=24.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.++++|.|++|+||||+++.+++.+.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            578999999999999999999998863

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.65  E-value=2.6e-05  Score=60.40  Aligned_cols=37  Identities=24%  Similarity=0.281  Sum_probs=29.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.-+|+|.|++|+||||||+.+.+.+..........+
T Consensus        21 ~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~   57 (198)
T d1rz3a_          21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH   57 (198)
T ss_dssp             SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhccccccceecc
Confidence            4457889999999999999999998776654444443

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.60  E-value=0.0001  Score=57.57  Aligned_cols=38  Identities=16%  Similarity=0.101  Sum_probs=26.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.+.+|.++||.|+||||.+.+++..++.+-..+..+.
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit   47 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVG   47 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEE
Confidence            45789999999999999999999988776544455554

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.60  E-value=0.00012  Score=57.10  Aligned_cols=38  Identities=18%  Similarity=0.132  Sum_probs=30.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++.+++.++|++|+||||.+.+++..+..+...+..+.
T Consensus         8 ~~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit   45 (207)
T d1ls1a2           8 KDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA   45 (207)
T ss_dssp             CSSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            35678999999999999999999998876655555444

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.59  E-value=1.6e-05  Score=60.36  Aligned_cols=26  Identities=31%  Similarity=0.307  Sum_probs=23.0

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ++.++|+|.|++|+||||+|+.+++.
T Consensus         2 ~~g~iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           2 LGGNILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            56789999999999999999988654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.53  E-value=4e-05  Score=57.78  Aligned_cols=33  Identities=15%  Similarity=0.018  Sum_probs=27.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      +++.|+|.+|+|||||+.+++..+..+...+..
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g~~v~v   34 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGT   34 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEE
Confidence            589999999999999999999988766433333

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=0.00013  Score=56.78  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=28.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .+.++.++||.|+||||.+.+++..++.+-..+..+
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~li   43 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA   43 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence            467899999999999999999999887554444444

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.52  E-value=0.00026  Score=55.04  Aligned_cols=37  Identities=19%  Similarity=0.161  Sum_probs=30.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..+++.++|+.|+||||.+.+++..+..+-..+..+.
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit   41 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA   41 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence            4678999999999999999999998876655566554

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.51  E-value=2.7e-05  Score=63.63  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=24.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .++.|.++||+|+|||+||+.++..+..
T Consensus        31 ~P~~ilL~GpPGtGKT~la~~la~~~~~   58 (273)
T d1gvnb_          31 SPTAFLLGGQPGSGKTSLRSAIFEETQG   58 (273)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhhc
Confidence            3567999999999999999999988653

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.51  E-value=0.00014  Score=56.81  Aligned_cols=37  Identities=19%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+.+|.++||.|+||||.+.+++.++..+...+..+.
T Consensus        10 ~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit   46 (213)
T d1vmaa2          10 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA   46 (213)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEe
Confidence            4678999999999999999999988776655565554

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.50  E-value=2.5e-05  Score=58.93  Aligned_cols=26  Identities=23%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      |.|++.|++|+||||+++.+++.+.-
T Consensus         2 p~IvliG~~G~GKSTig~~La~~l~~   27 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKALGV   27 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCC
Confidence            34566699999999999999998743

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=97.49  E-value=0.00015  Score=60.32  Aligned_cols=29  Identities=21%  Similarity=0.194  Sum_probs=23.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEG   33 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~   33 (329)
                      ++.++||||+|||.||+.++.....++++
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~  153 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEALGGKDKY  153 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHHHTTSCC
T ss_pred             eEEEECCCCccHHHHHHHHHHHhcCCCCe
Confidence            35568999999999999999998755443

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.48  E-value=6.2e-05  Score=57.79  Aligned_cols=35  Identities=17%  Similarity=0.111  Sum_probs=28.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++|+|.|++|+||||+++.+++.+....-....+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~~~~~~~~~~   36 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN   36 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence            68899999999999999999999876644444444

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=3.3e-05  Score=60.02  Aligned_cols=26  Identities=15%  Similarity=0.197  Sum_probs=23.9

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..++|+|.|++|+||||+|+.+++.+
T Consensus         7 ~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           7 QVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999998876

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.44  E-value=6.5e-05  Score=58.81  Aligned_cols=30  Identities=17%  Similarity=0.062  Sum_probs=25.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFE   32 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~   32 (329)
                      +-+|+++|.+|+||||+|+++++.+.....
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~   31 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGV   31 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            357899999999999999999988765443

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.43  E-value=4.8e-05  Score=59.68  Aligned_cols=29  Identities=17%  Similarity=0.277  Sum_probs=25.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +..+|+++|++|+||||+|+.+++.+...
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~l~~~   51 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQLVRD   51 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            45689999999999999999999877543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.41  E-value=3.8e-05  Score=58.14  Aligned_cols=25  Identities=28%  Similarity=0.411  Sum_probs=21.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      -.|+|.|++|+||||+++.+++.+.
T Consensus         6 ~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           6 INILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999988753

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.41  E-value=4.4e-05  Score=60.39  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=24.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .|+|+|.||+|+||||+|+.+++++.
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            58999999999999999999999874

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.40  E-value=5.1e-05  Score=58.57  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=22.6

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++.|+| |.|++|+||||+|+.+++.+
T Consensus         2 ~~~rii-l~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAV-LLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEE-EECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEE-EECCCCCCHHHHHHHHHHHh
Confidence            467777 57999999999999999876

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.40  E-value=4.5e-05  Score=58.84  Aligned_cols=27  Identities=26%  Similarity=0.201  Sum_probs=24.2

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +++-.|+|.|++|+||||+|+.+++.+
T Consensus         1 ~~Pm~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           1 ADPLKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CCSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            467789999999999999999998886

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=5.9e-05  Score=58.37  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +.+|+|.|++|+||||.|+.+++.+
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999999876

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.34  E-value=4.5e-05  Score=58.74  Aligned_cols=32  Identities=25%  Similarity=0.372  Sum_probs=25.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCce
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGS   34 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~   34 (329)
                      .|.|+|+||+|+|||||++.+++.....|...
T Consensus         1 ~rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~   32 (186)
T d1gkya_           1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFS   32 (186)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHCTTTEEEC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhCCcceeEE
Confidence            36689999999999999999988866554433

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.34  E-value=4.6e-05  Score=59.09  Aligned_cols=26  Identities=19%  Similarity=0.153  Sum_probs=23.8

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ++++|+|.|+||+||||+|+.+++.+
T Consensus         7 ~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           7 KSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999999998875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.34  E-value=4.7e-05  Score=57.68  Aligned_cols=25  Identities=16%  Similarity=0.248  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.|+|.|++|+||||+++.+++.+.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567889999999999999999874

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.31  E-value=5.2e-05  Score=56.90  Aligned_cols=24  Identities=25%  Similarity=0.436  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      -|+|.|++|+||||+++.+++.+.
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            378889999999999999999873

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=97.29  E-value=0.00026  Score=59.05  Aligned_cols=25  Identities=28%  Similarity=0.381  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ++.++||+|+|||.+|+.+++.+-.
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l~~   79 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATLFD   79 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHHHS
T ss_pred             EEEEECCCcchHHHHHHHHHHHhcC
Confidence            6788999999999999999998743

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00057  Score=56.97  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++.++||+|+|||.||+.+++.+.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCcchhHHHHHHHHhhcc
Confidence            678999999999999999999764

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=8e-05  Score=57.50  Aligned_cols=28  Identities=25%  Similarity=0.395  Sum_probs=23.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      |.|+|.||+|+|||||++.+++.....|
T Consensus         1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~   28 (190)
T d1lvga_           1 RPVVLSGPSGAGKSTLLKKLFQEHSSIF   28 (190)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHTTTE
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhCCCce
Confidence            4578999999999999999988875544

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.23  E-value=0.00087  Score=52.81  Aligned_cols=53  Identities=13%  Similarity=0.179  Sum_probs=31.6

Q ss_pred             hHHHHhhhcCceEEEEEecCC---ChhhHHHHhcccCCC--CCCcEEEEEeCchhHHH
Q 020206           74 LNFQSKRLTRKKVLIVFDDVN---HPRQIEFLIGNLDWF--ASGSRILITARDKQALI  126 (329)
Q Consensus        74 ~~~l~~~~~~~~~LlvlDdv~---~~~~~~~l~~~l~~~--~~~~~ilitsr~~~~~~  126 (329)
                      .-.+.+.+...+-+|++|+.-   ++..-..++..+...  ..+..+|++|.+.....
T Consensus       153 RvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~  210 (230)
T d1l2ta_         153 RVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVAR  210 (230)
T ss_dssp             HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHT
T ss_pred             HHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHH
Confidence            344555667788899999972   333333333222221  34677888998876653

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.0002  Score=58.71  Aligned_cols=37  Identities=24%  Similarity=0.304  Sum_probs=30.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.++|+++|-||+||||++..++..+...-..+..+.
T Consensus        19 ~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD   55 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTT   55 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            6799999999999999999999988776644455544

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00021  Score=58.93  Aligned_cols=37  Identities=27%  Similarity=0.231  Sum_probs=31.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      -+|+++++|-||+||||++..++..+.++-..+..+.
T Consensus         7 ~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD   43 (296)
T d1ihua1           7 IPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS   43 (296)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEe
Confidence            3689999999999999999999998877655566655

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.16  E-value=9.1e-05  Score=56.50  Aligned_cols=32  Identities=28%  Similarity=0.422  Sum_probs=26.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSY   35 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~   35 (329)
                      +.|+|+||+|+|||||++.++++..+.|...+
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v   35 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI   35 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhCCcCeeecc
Confidence            67999999999999999999887655554433

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=97.15  E-value=0.00022  Score=57.03  Aligned_cols=36  Identities=19%  Similarity=0.214  Sum_probs=32.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..++.|+|++|+|||+|+.+++.....+...++|++
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is   61 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVENACANKERAILFA   61 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceee
Confidence            358899999999999999999999888878888876

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.14  E-value=0.00014  Score=57.38  Aligned_cols=27  Identities=22%  Similarity=0.318  Sum_probs=23.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      +.-+|+|.||+|+||||+|+.+++.+.
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            444688999999999999999998873

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=97.13  E-value=0.00075  Score=57.23  Aligned_cols=25  Identities=24%  Similarity=0.240  Sum_probs=21.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++++|+|++|+|||+++..+...+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l~~l  187 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLLAAL  187 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHHHHH
Confidence            5789999999999999998776544

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.12  E-value=0.00037  Score=55.29  Aligned_cols=55  Identities=7%  Similarity=0.076  Sum_probs=33.1

Q ss_pred             chHHHHhhhcCceEEEEEecCC---Chhh---HHHHhcccCCCCCCcEEEEEeCchhHHHhc
Q 020206           73 GLNFQSKRLTRKKVLIVFDDVN---HPRQ---IEFLIGNLDWFASGSRILITARDKQALINC  128 (329)
Q Consensus        73 ~~~~l~~~~~~~~~LlvlDdv~---~~~~---~~~l~~~l~~~~~~~~ilitsr~~~~~~~~  128 (329)
                      ..-.+.+.+..++-+|++|+.-   ++..   +..++..+.. ..|..+|++|.+.......
T Consensus       143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~-~~g~tii~vTHd~~~a~~~  203 (239)
T d1v43a3         143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQ-KLKVTTIYVTHDQVEAMTM  203 (239)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-HHTCEEEEEESCHHHHHHH
T ss_pred             HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHh
Confidence            3345566677888899999972   3332   2222222210 2377899999988655543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.11  E-value=0.00014  Score=55.50  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |+|.|++|+||||+|+.+++.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7899999999999999998886

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.11  E-value=0.00034  Score=55.47  Aligned_cols=22  Identities=18%  Similarity=0.169  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .++|.||.|+|||||.+.++.-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            6789999999999999999864

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=97.10  E-value=0.00059  Score=55.25  Aligned_cols=36  Identities=22%  Similarity=0.183  Sum_probs=30.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++-|+|++|+|||+||.+++......-..++|+.
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiD   92 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID   92 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             ceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEE
Confidence            468899999999999999999988776656678876

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.08  E-value=0.0004  Score=56.24  Aligned_cols=36  Identities=19%  Similarity=0.141  Sum_probs=31.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .+++-|+|++|+|||+||.+++......-..++|+.
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyID   95 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFID   95 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEE
Confidence            468899999999999999999988777777788887

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.06  E-value=0.0005  Score=54.30  Aligned_cols=23  Identities=17%  Similarity=0.167  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ..+++|.|+.|+|||||.+.++.
T Consensus        26 Gei~~liGpsGsGKSTLl~~i~G   48 (232)
T d2awna2          26 GEFVVFVGPSGCGKSTLLRMIAG   48 (232)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHHT
T ss_pred             CCEEEEECCCCChHHHHHHHHhc
Confidence            35789999999999999998875

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.05  E-value=0.00017  Score=55.04  Aligned_cols=25  Identities=20%  Similarity=0.309  Sum_probs=22.3

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ++|+|+||+|+|||||++.+.+.+.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCC
Confidence            6899999999999999999887753

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.02  E-value=0.00019  Score=54.76  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .|+|.|++|+||||+|+.+++.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            37888999999999999999887

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.01  E-value=0.00052  Score=55.15  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...++|+|++|+|||||++.++.-
T Consensus        41 Ge~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          41 GKTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             TCEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCChHHHHHHHHhcc
Confidence            357899999999999999988753

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00022  Score=55.90  Aligned_cols=27  Identities=15%  Similarity=0.333  Sum_probs=23.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      +=+|+|.|++|+||||+|+.+++.+..
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~   28 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQ   28 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhch
Confidence            457899999999999999999988654

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.01  E-value=0.00019  Score=54.74  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=20.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |+|.|++|+||||+|+.+++.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHH
Confidence            7789999999999999999886

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00076  Score=53.48  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ..+++|.|++|+|||||++.++.
T Consensus        31 Ge~~~iiG~sGsGKSTLl~~i~G   53 (240)
T d3dhwc1          31 GQIYGVIGASGAGKSTLIRCVNL   53 (240)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHcC
Confidence            35789999999999999998875

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.00  E-value=0.00038  Score=56.65  Aligned_cols=35  Identities=20%  Similarity=0.325  Sum_probs=28.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      |.|+|+|-||+||||++..++..+......+..+.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA~~G~rVllID   36 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVG   36 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence            67899999999999999999998877644455544

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.99  E-value=0.00017  Score=55.47  Aligned_cols=23  Identities=22%  Similarity=0.416  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .|+|.|++|+||||+++.+++.+
T Consensus         8 rIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           8 RAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            35577999999999999999875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.91  E-value=0.00054  Score=54.38  Aligned_cols=24  Identities=29%  Similarity=0.418  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-+++|.|++|+|||||++.++.-
T Consensus        31 Ge~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          31 GERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            357899999999999999998863

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00033  Score=53.30  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .|+|.|++|+||||+++.+++.+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            35677999999999999999886

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.88  E-value=0.0039  Score=50.21  Aligned_cols=34  Identities=26%  Similarity=0.503  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ..+.|.|.+|+|||+|+.+++.........++.+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~  102 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVF  102 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEE
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEE
Confidence            3478999999999999999998865444444433

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.87  E-value=0.00021  Score=58.38  Aligned_cols=30  Identities=17%  Similarity=0.285  Sum_probs=23.4

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +++++|+|+|.+|+||||+++.+.+.+...
T Consensus         2 ~k~pIIgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           2 KKHPIISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             TTSCEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            468899999999999999999998877643

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.86  E-value=0.0003  Score=53.42  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      |+|.|++|+||||.++.+++.+
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6789999999999999998876

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.86  E-value=0.01  Score=47.22  Aligned_cols=21  Identities=33%  Similarity=0.385  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |.|+|++|+|||.+|+.+++.
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~   46 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKL   46 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHHh
Confidence            688999999999999998764

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.85  E-value=0.00062  Score=53.14  Aligned_cols=37  Identities=8%  Similarity=0.103  Sum_probs=30.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ..+.|+|.|+.|+||||+++.+++.+..+...+.+..
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~   38 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR   38 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEe
Confidence            4578999999999999999999999877655555544

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.80  E-value=0.00052  Score=54.66  Aligned_cols=28  Identities=25%  Similarity=0.461  Sum_probs=23.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCC
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFE   32 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~   32 (329)
                      +|+|.|++|+|||||...+.+.......
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~   29 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYK   29 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCe
Confidence            7899999999999999999887654443

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.80  E-value=0.00081  Score=53.43  Aligned_cols=24  Identities=25%  Similarity=0.299  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||.+.++..
T Consensus        28 Gei~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          28 GEIFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            458899999999999999988754

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.75  E-value=0.00073  Score=56.34  Aligned_cols=29  Identities=31%  Similarity=0.483  Sum_probs=25.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      ...+|+|+|+||+|||||...+...+...
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~~   78 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTAA   78 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhhc
Confidence            45789999999999999999999876544

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00072  Score=56.47  Aligned_cols=36  Identities=28%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ...+|+|+|+||+|||||...+...+......+..+
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavl   88 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVI   88 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeee
Confidence            367899999999999999999998877654444444

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.73  E-value=0.0014  Score=52.41  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+++.|+|++|+|||+|+.+++....
T Consensus        36 G~~~li~G~pGsGKT~~~lq~~~~~~   61 (254)
T d1pzna2          36 QAITEVFGEFGSGKTQLAHTLAVMVQ   61 (254)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence            36899999999999999999998754

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.67  E-value=0.00053  Score=53.31  Aligned_cols=26  Identities=15%  Similarity=0.195  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .++++|+||+|+|||||.+.+++...
T Consensus         2 G~livi~GPSG~GK~tl~~~L~~~~p   27 (205)
T d1s96a_           2 GTLYIVSAPSGAGKSSLIQALLKTQP   27 (205)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            36899999999999999999988753

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.65  E-value=0.0009  Score=54.94  Aligned_cols=35  Identities=17%  Similarity=0.350  Sum_probs=28.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      |.|+|+|-||+||||++..++..+...-..+..+.
T Consensus         3 r~IaisgKGGVGKTT~a~NLA~~LA~~G~rVLlID   37 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVG   37 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence            56788999999999999999998876644455554

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.62  E-value=0.00047  Score=55.40  Aligned_cols=23  Identities=17%  Similarity=0.286  Sum_probs=19.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ...++|+|++|+|||||++.+..
T Consensus        44 Ge~vaivG~sGsGKSTLl~ll~g   66 (255)
T d2hyda1          44 GETVAFVGMSGGGKSTLINLIPR   66 (255)
T ss_dssp             TCEEEEECSTTSSHHHHHTTTTT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHh
Confidence            35789999999999999997764

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00066  Score=54.09  Aligned_cols=28  Identities=21%  Similarity=0.226  Sum_probs=25.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      |++.|+|-|+-|+||||+++.+++.+..
T Consensus         1 ~pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            6899999999999999999999987654

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.59  E-value=0.00091  Score=55.18  Aligned_cols=29  Identities=28%  Similarity=0.255  Sum_probs=25.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      .+-+|+|.|++|+||||+|+.+...+...
T Consensus        79 ~P~iIGIaG~sgSGKSTla~~L~~lL~~~  107 (308)
T d1sq5a_          79 IPYIISIAGSVAVGKSTTARVLQALLSRW  107 (308)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred             CCEEEEEeCCCCCCCcHHHHHHHHHHhhh
Confidence            45689999999999999999999887654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00069  Score=52.85  Aligned_cols=28  Identities=18%  Similarity=0.112  Sum_probs=23.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      .+++.|.|++|+|||+|+.+++......
T Consensus        23 G~v~~i~G~~GsGKT~l~l~la~~~~~~   50 (242)
T d1n0wa_          23 GSITEMFGEFRTGKTQICHTLAVTCQLP   50 (242)
T ss_dssp             TSEEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence            3689999999999999999999876443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.46  E-value=0.0015  Score=50.64  Aligned_cols=33  Identities=15%  Similarity=0.175  Sum_probs=26.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      +|+|.|.-|+||||+++.+.+.+..+...+..+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~~g~~v~~~   34 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL   34 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEE
Confidence            589999999999999999999887654444443

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.0022  Score=51.70  Aligned_cols=35  Identities=20%  Similarity=0.238  Sum_probs=30.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +++-|+|++|+|||+|+.+++......-..++|+.
T Consensus        55 ~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyid   89 (263)
T d1u94a1          55 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFID   89 (263)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEc
Confidence            68899999999999999999998877767778876

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.46  E-value=0.00076  Score=57.19  Aligned_cols=27  Identities=22%  Similarity=0.104  Sum_probs=24.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      .+.+.++||+|+|||++|..+++.+..
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~~~~  180 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLELCGG  180 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence            468999999999999999999998753

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.00062  Score=55.40  Aligned_cols=30  Identities=17%  Similarity=0.027  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEG   33 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~   33 (329)
                      ..+.|.|++|+|||+|+.++++....+...
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~~~~~~~~   73 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPD   73 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHHHCTT
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHHHhhcCCC
Confidence            457899999999999999999876544333

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.39  E-value=0.00052  Score=52.88  Aligned_cols=26  Identities=27%  Similarity=0.155  Sum_probs=22.0

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+-+|+|.|..|+||||+++.+++.+
T Consensus         8 kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           8 QPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            45589999999999999999986544

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.37  E-value=0.0012  Score=50.51  Aligned_cols=23  Identities=30%  Similarity=0.427  Sum_probs=19.5

Q ss_pred             CCceEEEEEcCCCCcHHHHHHHH
Q 020206            1 MDTCKLGIWGIGGVGKTAIAGAF   23 (329)
Q Consensus         1 ~~~r~v~I~G~~GiGKTtLa~~~   23 (329)
                      |.+=+|+|+|++|+||||+|..+
T Consensus         1 k~p~IIgitG~~gSGKstva~~l   23 (191)
T d1uf9a_           1 KHPIIIGITGNIGSGKSTVAALL   23 (191)
T ss_dssp             CCCEEEEEEECTTSCHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHH
Confidence            34557889999999999999876

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.34  E-value=0.032  Score=43.74  Aligned_cols=25  Identities=20%  Similarity=-0.060  Sum_probs=22.1

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      +.++++|+||-..||||+.++++-.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHH
Confidence            3578999999999999999999864

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.32  E-value=0.0032  Score=48.78  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=28.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC-CCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR-FEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~-~~~~~~~~   38 (329)
                      .+.|+|-|+.|+||||+++.+.+.+... +..+.+..
T Consensus         2 gkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~   38 (210)
T d4tmka_           2 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTR   38 (210)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEec
Confidence            3679999999999999999999988655 34444443

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=96.29  E-value=0.0012  Score=48.52  Aligned_cols=21  Identities=24%  Similarity=0.243  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|++|+|||||...+...
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            679999999999999998764

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.27  E-value=0.0022  Score=50.42  Aligned_cols=35  Identities=20%  Similarity=0.259  Sum_probs=28.9

Q ss_pred             eEEEEE-cCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIW-GIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      |+|+|+ |-||+||||++..++..+.+....+.++.
T Consensus         2 kvIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD   37 (232)
T d1hyqa_           2 RTITVASGKGGTGKTTITANLGVALAQLGHDVTIVD   37 (232)
T ss_dssp             EEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEe
Confidence            677777 78999999999999998887666666664

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.26  E-value=0.0011  Score=53.89  Aligned_cols=28  Identities=14%  Similarity=0.193  Sum_probs=23.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      +=+|+|.|+.|+|||||+..+...+.++
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~~   54 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLMEK   54 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHHH
Confidence            3478899999999999999998876554

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.19  E-value=0.0015  Score=51.49  Aligned_cols=24  Identities=25%  Similarity=0.236  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .++.|+|++|+|||+|+.+++...
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~~~   50 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLYNG   50 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHH
Confidence            578999999999999999987653

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.19  E-value=0.001  Score=52.81  Aligned_cols=25  Identities=12%  Similarity=0.138  Sum_probs=22.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+++.|+|++|+|||+|+.+++...
T Consensus        34 G~~~li~G~pGsGKT~l~lq~~~~~   58 (251)
T d1szpa2          34 GSITELFGEFRTGKSQLCHTLAVTC   58 (251)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHTTTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999997654

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.17  E-value=0.0047  Score=52.99  Aligned_cols=90  Identities=10%  Similarity=0.035  Sum_probs=53.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCcchHHHHhhhcC
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNIGLNFQSKRLTR   83 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~   83 (329)
                      -+|.|+||.|+||||....+.+.+......++-+-+.-+..-...         .+.  +.. ..........++..++.
T Consensus       159 GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~---------~q~--~v~-~~~~~~~~~~l~~~lR~  226 (401)
T d1p9ra_         159 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGI---------GQT--QVN-PRVDMTFARGLRAILRQ  226 (401)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSS---------EEE--ECB-GGGTBCHHHHHHHHGGG
T ss_pred             ceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCC---------Cee--eec-CCcCCCHHHHHHHHHhh
Confidence            479999999999999999999876443333333322211100000         000  000 01111145566667777


Q ss_pred             ceEEEEEecCCChhhHHHHhcc
Q 020206           84 KKVLIVFDDVNHPRQIEFLIGN  105 (329)
Q Consensus        84 ~~~LlvlDdv~~~~~~~~l~~~  105 (329)
                      -+=+|++.++.+.+.....+..
T Consensus       227 dPDvi~igEiRd~~ta~~a~~a  248 (401)
T d1p9ra_         227 DPDVVMVGEIRDLETAQIAVQA  248 (401)
T ss_dssp             CCSEEEESCCCSHHHHHHHHHH
T ss_pred             cCCEEEecCcCChHHHHHHHHH
Confidence            7789999999988877666544

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.17  E-value=0.0012  Score=52.59  Aligned_cols=27  Identities=22%  Similarity=0.213  Sum_probs=23.5

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      ..++.|.|++|+|||+|+.+++.....
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~~~~~   60 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCVNLQN   60 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHTTC
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence            368999999999999999999987543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0019  Score=51.45  Aligned_cols=26  Identities=15%  Similarity=0.144  Sum_probs=23.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+++.|+|++|+|||+|+.+++....
T Consensus        37 G~~~~i~G~~GsGKT~lalq~~~~~~   62 (258)
T d1v5wa_          37 MAITEAFGEFRTGKTQLSHTLCVTAQ   62 (258)
T ss_dssp             SEEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            36899999999999999999998654

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.12  E-value=0.0045  Score=53.75  Aligned_cols=54  Identities=19%  Similarity=0.268  Sum_probs=35.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhh----cCChHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEE----TGKLADLRKELLSTL   60 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~i~~~~   60 (329)
                      ..-|.+.||+|+|||-||+.+++.+.    ..+...+...+++    ..++.+++..++...
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~----VPFv~~daT~fTeaGYvG~DVesii~~L~~~a  106 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLAN----APFIKVEATKFTEVGYVGKEVDSIIRDLTDSA  106 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTT----CCEEEEEGGGGC----CCCCTHHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhC----CCEEEeecceeeecceeecchhHHHHHHHHHH
Confidence            34689999999999999999998652    2233333333333    245666666665543

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=96.10  E-value=0.011  Score=42.13  Aligned_cols=24  Identities=17%  Similarity=0.149  Sum_probs=19.6

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      +.++..|+++.|+|||+++..++.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            457889999999999998766543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.05  E-value=0.0057  Score=49.47  Aligned_cols=35  Identities=11%  Similarity=-0.052  Sum_probs=26.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh-cCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS-RRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~-~~~~~~~~~~   38 (329)
                      .+++|.|++|+|||+|+.+++.++. .+-..+++++
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s   71 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM   71 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEee
Confidence            5789999999999999999998754 3333455544

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0034  Score=48.93  Aligned_cols=28  Identities=21%  Similarity=0.293  Sum_probs=25.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRR   30 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~   30 (329)
                      .+.|+|-|+-|+||||+++.+++.+..+
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~   30 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQPN   30 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTTS
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHhC
Confidence            5789999999999999999999988754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.99  E-value=0.001  Score=51.44  Aligned_cols=25  Identities=20%  Similarity=0.352  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+++|.|+.|+|||||.+.++..+
T Consensus        27 Gei~~l~G~NGsGKSTLl~~i~gl~   51 (200)
T d1sgwa_          27 GNVVNFHGPNGIGKTTLLKTISTYL   51 (200)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhccc
Confidence            3578999999999999999998643

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.95  E-value=0.0039  Score=49.02  Aligned_cols=35  Identities=23%  Similarity=0.302  Sum_probs=28.3

Q ss_pred             eEEEEE-cCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIW-GIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~-G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      |+|+|+ +-||+||||++..++..+......+..+.
T Consensus         3 ~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD   38 (237)
T d1g3qa_           3 RIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVD   38 (237)
T ss_dssp             EEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             eEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence            678888 67999999999999998877655566654

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.93  E-value=0.0021  Score=47.70  Aligned_cols=20  Identities=25%  Similarity=0.521  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||||+..+.+
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67999999999999999886

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0021  Score=47.79  Aligned_cols=21  Identities=38%  Similarity=0.430  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+.++.+.
T Consensus         7 ivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999999863

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=95.92  E-value=0.0021  Score=47.49  Aligned_cols=21  Identities=33%  Similarity=0.419  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|+|.+|+|||||...+...
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999998763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.0024  Score=47.47  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .+-|+|.|.+|+|||+|+..+..
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCcCHHHHHHHHHh
Confidence            45688899999999999999876

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=95.90  E-value=0.004  Score=48.33  Aligned_cols=35  Identities=17%  Similarity=0.018  Sum_probs=29.2

Q ss_pred             eEEEEEcCC-CCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIG-GVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~-GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.+.|+|-+ |+||||++..++..+.++-..+..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id   37 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYK   37 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEC
Confidence            568999997 99999999999999877755566654

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0022  Score=48.06  Aligned_cols=21  Identities=38%  Similarity=0.425  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+..+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            678999999999999998763

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0023  Score=47.75  Aligned_cols=21  Identities=48%  Similarity=0.844  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+..++..
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            578899999999999999874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.87  E-value=0.0023  Score=47.60  Aligned_cols=21  Identities=38%  Similarity=0.689  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+..+...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.84  E-value=0.0022  Score=50.37  Aligned_cols=24  Identities=21%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      +|+..|+|.-|+|||||.+.+.+.
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            689999999999999999999875

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.83  E-value=0.0025  Score=47.29  Aligned_cols=21  Identities=29%  Similarity=0.389  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+.++...
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999863

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0025  Score=47.44  Aligned_cols=20  Identities=30%  Similarity=0.473  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||+|+..+..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999999876

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.80  E-value=0.0025  Score=47.59  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+..+.+.
T Consensus         8 i~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999863

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=95.76  E-value=0.0027  Score=50.19  Aligned_cols=23  Identities=22%  Similarity=0.169  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -+++|.|+.|+|||||++.++.-
T Consensus        30 e~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          30 EFMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            57899999999999999998753

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0028  Score=47.32  Aligned_cols=21  Identities=29%  Similarity=0.436  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+.++.+.
T Consensus         9 i~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999863

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.75  E-value=0.026  Score=43.92  Aligned_cols=24  Identities=17%  Similarity=-0.063  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .++++|+||-..||||+.++++-.
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhHHH
Confidence            468899999999999999999764

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.73  E-value=0.0029  Score=47.07  Aligned_cols=21  Identities=43%  Similarity=0.703  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|+|.+|+|||+|+..+...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678999999999999998763

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0031  Score=48.66  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=21.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|.|+|.|.+|+|||||...+...
T Consensus         3 ~p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           3 QPSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            478999999999999999999753

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.71  E-value=0.0029  Score=47.15  Aligned_cols=21  Identities=29%  Similarity=0.316  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||||+..+...
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998763

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0029  Score=47.41  Aligned_cols=21  Identities=48%  Similarity=0.694  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||+|+..+..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999876

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.0011  Score=52.50  Aligned_cols=26  Identities=19%  Similarity=0.144  Sum_probs=22.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      -+.|+|-|+-|+||||+++.+++.+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            47899999999999999999877653

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0031  Score=46.68  Aligned_cols=21  Identities=33%  Similarity=0.455  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+..+.+.
T Consensus         3 v~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999999863

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.67  E-value=0.0031  Score=47.12  Aligned_cols=21  Identities=43%  Similarity=0.645  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|...+...
T Consensus         8 i~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            788999999999999998763

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.66  E-value=0.0046  Score=45.32  Aligned_cols=24  Identities=25%  Similarity=0.309  Sum_probs=21.9

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      -+|.+.|+=|+||||+++.+++.+
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEEecCCCccHHHHHHHHHhhc
Confidence            378999999999999999999875

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0029  Score=47.17  Aligned_cols=20  Identities=35%  Similarity=0.815  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||||+..+..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            57889999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=95.64  E-value=0.003  Score=50.11  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=20.5

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..++|+|++|+|||||++.+..-
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            57899999999999999988764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.63  E-value=0.0033  Score=46.68  Aligned_cols=20  Identities=30%  Similarity=0.491  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |++.|.+|+|||||+.+++.
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999876

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0038  Score=46.90  Aligned_cols=22  Identities=36%  Similarity=0.303  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||+|+..+.+.
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678899999999999998764

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.62  E-value=0.0037  Score=46.80  Aligned_cols=25  Identities=28%  Similarity=0.246  Sum_probs=21.5

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      +.+-|.|.|++|+||||+|..+.++
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~~~   37 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELVQR   37 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHc
Confidence            3467899999999999999988764

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.62  E-value=0.0033  Score=46.72  Aligned_cols=20  Identities=35%  Similarity=0.534  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||+|+..+.+
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            66889999999999999976

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.62  E-value=0.0033  Score=47.55  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||+|+.++.+.
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999999864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0034  Score=46.57  Aligned_cols=21  Identities=38%  Similarity=0.635  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+.++...
T Consensus         6 i~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            678899999999999999863

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0034  Score=46.98  Aligned_cols=21  Identities=38%  Similarity=0.582  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||||+..+..
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHc
Confidence            378999999999999999875

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.0037  Score=48.26  Aligned_cols=22  Identities=18%  Similarity=0.197  Sum_probs=20.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |.|+|.|++|+|||||...+..
T Consensus         1 k~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           1 RAVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHc
Confidence            5699999999999999999876

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.58  E-value=0.0033  Score=47.19  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .--|+|+|.+|+|||||...+..
T Consensus        13 ~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          13 TGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            34578999999999999988754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=95.58  E-value=0.0027  Score=50.40  Aligned_cols=24  Identities=21%  Similarity=0.200  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...++|+|+.|+|||||++.++.-
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            357899999999999999998753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0037  Score=48.42  Aligned_cols=19  Identities=37%  Similarity=0.525  Sum_probs=17.5

Q ss_pred             EEEEEcCCCCcHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAF   23 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~   23 (329)
                      +|+|+|..|+||||++..+
T Consensus         5 iIgitG~igSGKStv~~~l   23 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAF   23 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHH
Confidence            7899999999999999865

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=95.57  E-value=0.0038  Score=47.70  Aligned_cols=24  Identities=17%  Similarity=0.360  Sum_probs=21.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      +.+.|+|.|.+|+|||||...+..
T Consensus        22 ~~~~I~lvG~~n~GKSTLin~L~g   45 (195)
T d1svia_          22 GLPEIALAGRSNVGKSSFINSLIN   45 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHhcC
Confidence            356799999999999999999974

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=95.57  E-value=0.0027  Score=49.76  Aligned_cols=24  Identities=25%  Similarity=0.142  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-+++|.|+.|+|||||.+.++.-
T Consensus        26 Ge~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          26 GEYFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcC
Confidence            347899999999999999998853

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.54  E-value=0.0037  Score=46.57  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||+|+.++...
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3678899999999999998864

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0039  Score=46.47  Aligned_cols=21  Identities=33%  Similarity=0.403  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+.++...
T Consensus         9 i~vvG~~~vGKTsli~~~~~~   29 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKDG   29 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999998763

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=95.49  E-value=0.0035  Score=46.42  Aligned_cols=20  Identities=35%  Similarity=0.499  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|++|+|||||...+..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            67999999999999998865

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.46  E-value=0.0039  Score=50.69  Aligned_cols=25  Identities=28%  Similarity=0.355  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...++|+|+.|+|||||++.++..+
T Consensus        62 Ge~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          62 GEMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CCEEEEECCCCChHHHHHHHHhCCC
Confidence            3578999999999999999998644

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0041  Score=46.53  Aligned_cols=20  Identities=25%  Similarity=0.498  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||+|+.++..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.45  E-value=0.0042  Score=46.31  Aligned_cols=21  Identities=24%  Similarity=0.317  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .|+|.|.+|+|||||+..+..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~   22 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVK   22 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999874

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=95.44  E-value=0.015  Score=48.16  Aligned_cols=90  Identities=14%  Similarity=0.063  Sum_probs=51.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHhcCCCCCCCCCc-chHHHHhhhc
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLLNDGNMNKFPNI-GLNFQSKRLT   82 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~l~~~~~   82 (329)
                      +.|.|+|+.|+||||+...++..+-.. ..++.+-+..+..-.... .       .....    ...+. ..+.+...++
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~i~~~-~rivtiEd~~El~l~~~~-~-------~~~~~----~~~~~~~~~ll~~~lR  233 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFKHHK-N-------YTQLF----FGGNITSADCLKSCLR  233 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGGSCTT-CCEEEEESSCCCCCSSCS-S-------EEEEE----CBTTBCHHHHHHHHTT
T ss_pred             CCEEEEeeccccchHHHHHHhhhcccc-cceeeccchhhhhccccc-c-------cceec----cccchhHHHHHHHHhc
Confidence            458999999999999999988765332 334443332222110000 0       00000    00111 3455666677


Q ss_pred             CceEEEEEecCCChhhHHHHhcccC
Q 020206           83 RKKVLIVFDDVNHPRQIEFLIGNLD  107 (329)
Q Consensus        83 ~~~~LlvlDdv~~~~~~~~l~~~l~  107 (329)
                      ..+=.||+.++...+.+. ++....
T Consensus       234 ~~pd~iivgEiR~~ea~~-~l~a~~  257 (323)
T d1g6oa_         234 MRPDRIILGELRSSEAYD-FYNVLC  257 (323)
T ss_dssp             SCCSEEEESCCCSTHHHH-HHHHHH
T ss_pred             cCCCcccCCccCchhHHH-HHHHHH
Confidence            778889999998877765 444443

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0044  Score=49.48  Aligned_cols=24  Identities=21%  Similarity=0.259  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...++|+|+.|+|||||++.+..-
T Consensus        40 Ge~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          40 GEVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhcc
Confidence            357899999999999999988753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0042  Score=46.54  Aligned_cols=20  Identities=30%  Similarity=0.496  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||||+..+..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999876

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.43  E-value=0.0039  Score=48.14  Aligned_cols=20  Identities=45%  Similarity=0.564  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAF   23 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~   23 (329)
                      -+|+|+|..|+||||+++.+
T Consensus         3 ~iIgITG~igSGKStv~~~l   22 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLF   22 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH
Confidence            36899999999999998865

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0039  Score=46.37  Aligned_cols=20  Identities=40%  Similarity=0.551  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||+|+..+..
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            67899999999999998865

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.43  E-value=0.0056  Score=49.40  Aligned_cols=25  Identities=24%  Similarity=0.319  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      .+..|+|++|+|||+|+.+++..+.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999998764

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.43  E-value=0.0034  Score=50.33  Aligned_cols=24  Identities=21%  Similarity=0.202  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.|+.|+|||||++.++.-
T Consensus        28 GEi~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          28 GDVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHHcC
Confidence            357999999999999999998753

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0042  Score=47.32  Aligned_cols=22  Identities=32%  Similarity=0.431  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||+|+.++.+.
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4778899999999999998763

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.41  E-value=0.0042  Score=47.04  Aligned_cols=21  Identities=29%  Similarity=0.401  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+..+.+.
T Consensus        12 i~lvG~~~vGKTsLi~r~~~~   32 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAND   32 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            789999999999999998763

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.40  E-value=0.0043  Score=46.89  Aligned_cols=20  Identities=35%  Similarity=0.594  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||||+..+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999876

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.40  E-value=0.0044  Score=46.11  Aligned_cols=21  Identities=43%  Similarity=0.651  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||+|+.++..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999999876

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.0044  Score=46.71  Aligned_cols=21  Identities=29%  Similarity=0.359  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |++.|.+|+|||+|+..+.+.
T Consensus         5 ivliG~~~vGKTsli~r~~~~   25 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAKD   25 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999999874

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.004  Score=47.12  Aligned_cols=20  Identities=35%  Similarity=0.381  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||||+..+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            67899999999999998864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.35  E-value=0.0043  Score=46.46  Aligned_cols=24  Identities=25%  Similarity=0.332  Sum_probs=20.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+-|.|.|++|+|||++|..+.++
T Consensus        15 g~gvli~G~sG~GKS~lal~l~~~   38 (177)
T d1knxa2          15 GVGVLLTGRSGIGKSECALDLINK   38 (177)
T ss_dssp             TEEEEEEESSSSSHHHHHHHHHTT
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHc
Confidence            467899999999999999998753

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.0047  Score=46.21  Aligned_cols=20  Identities=30%  Similarity=0.664  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||||+.++.+
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999876

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.33  E-value=0.0054  Score=45.59  Aligned_cols=24  Identities=25%  Similarity=0.322  Sum_probs=21.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .+-|.|.|++|+||||+|..+.++
T Consensus        15 g~gvli~G~sg~GKS~la~~l~~~   38 (169)
T d1ko7a2          15 GVGVLITGDSGIGKSETALELIKR   38 (169)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEEEeCCCCCHHHHHHHHHHc
Confidence            467899999999999999988775

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.33  E-value=0.0048  Score=45.13  Aligned_cols=22  Identities=27%  Similarity=0.389  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|++|+|||||+..+...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999998763

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.31  E-value=0.0048  Score=47.14  Aligned_cols=21  Identities=33%  Similarity=0.452  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||||+.++...
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            678999999999999999863

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=95.30  E-value=0.0046  Score=46.19  Aligned_cols=21  Identities=38%  Similarity=0.417  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|+|.+|+|||||+.++..
T Consensus        17 kI~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          17 KVIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            467899999999999998865

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.29  E-value=0.0052  Score=46.56  Aligned_cols=21  Identities=29%  Similarity=0.341  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |++.|.+|+|||+|+.++...
T Consensus         5 ivllG~~~vGKTsl~~r~~~~   25 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKII   25 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhhC
Confidence            578899999999999988653

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=95.27  E-value=0.0052  Score=45.42  Aligned_cols=20  Identities=30%  Similarity=0.366  Sum_probs=17.5

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|++|+|||||..++..
T Consensus         5 i~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            55779999999999999865

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.25  E-value=0.0052  Score=45.73  Aligned_cols=21  Identities=52%  Similarity=0.800  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |++.|.+|+|||+|+..++..
T Consensus         7 i~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            577899999999999999863

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=95.25  E-value=0.0096  Score=47.98  Aligned_cols=33  Identities=21%  Similarity=0.086  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      .+.|.|.+|+|||+|+.+.......+....++.
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~  101 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTILNQQGQNVICVYV  101 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEE
T ss_pred             eEeeccCCCCChHHHHHHHHhhhcccCceeeee
Confidence            367899999999999998765544443333443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.005  Score=45.99  Aligned_cols=20  Identities=35%  Similarity=0.571  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||+|+..+..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999998864

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.19  E-value=0.0064  Score=48.05  Aligned_cols=23  Identities=22%  Similarity=0.210  Sum_probs=20.6

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ++|+|+|..|+||||+|..+.+.
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999988665

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.19  E-value=0.0058  Score=46.51  Aligned_cols=21  Identities=24%  Similarity=0.284  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+.++...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            678899999999999998665

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.18  E-value=0.0049  Score=46.06  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|++|+|||||...+..
T Consensus        18 kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          18 RILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999988744

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.16  E-value=0.0058  Score=45.81  Aligned_cols=20  Identities=35%  Similarity=0.488  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||+|+..+..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999876

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.13  E-value=0.0051  Score=46.96  Aligned_cols=18  Identities=22%  Similarity=0.429  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAF   23 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~   23 (329)
                      |+|.|.+|+|||+|+.++
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            679999999999999998

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.13  E-value=0.0031  Score=52.78  Aligned_cols=22  Identities=23%  Similarity=0.345  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|.|.|++|+|||+||+.++.-
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~i   51 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAAL   51 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHh
Confidence            3789999999999999999874

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.13  E-value=0.0043  Score=46.37  Aligned_cols=20  Identities=25%  Similarity=0.305  Sum_probs=17.7

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|++|+|||||...+..
T Consensus        15 IvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          15 ILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEETTSSHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            66889999999999998864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.03  E-value=0.0063  Score=51.41  Aligned_cols=23  Identities=26%  Similarity=0.400  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+.+.||+|+|||-||+.+++..
T Consensus        70 niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          70 NILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceeeeCCCCccHHHHHHHHHhhc
Confidence            47889999999999999999875

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.01  E-value=0.0031  Score=47.11  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=17.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||+|+.++.+.
T Consensus         6 i~vvG~~~vGKTsli~~~~~~   26 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLTG   26 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC--
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678899999999999988653

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.007  Score=45.37  Aligned_cols=22  Identities=27%  Similarity=0.588  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|.|.+|+|||+|+.++...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            3789999999999999998774

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.80  E-value=0.0079  Score=44.09  Aligned_cols=20  Identities=25%  Similarity=0.316  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||||..++..
T Consensus         4 I~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67999999999999999875

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.77  E-value=0.035  Score=44.75  Aligned_cols=24  Identities=29%  Similarity=0.100  Sum_probs=20.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ..+.|.|.+|+|||+|+.+++...
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~~~   92 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTIINQ   92 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHHHT
T ss_pred             CEEEeecCCCCChHHHHHHHHHhH
Confidence            346789999999999999888654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.75  E-value=0.009  Score=44.72  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=21.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ...|+|.|.+|+|||||+..++..
T Consensus         5 ~~~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           5 SGFVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            457999999999999999998763

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.74  E-value=0.0054  Score=49.04  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=21.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      .+++|.|+.|+|||||++.++..+
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl~   54 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGFL   54 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHCCC
Confidence            578999999999999999987643

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=94.74  E-value=0.0072  Score=47.82  Aligned_cols=24  Identities=25%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..+++|.||.|.|||||.+.++.-
T Consensus        32 Gei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          32 GQIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             TCEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCC
Confidence            357899999999999999988753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=94.69  E-value=0.0055  Score=46.12  Aligned_cols=20  Identities=35%  Similarity=0.519  Sum_probs=17.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~   24 (329)
                      -|+|.|.+|+|||||..++.
T Consensus        19 KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            36799999999999999874

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.48  E-value=0.0093  Score=46.52  Aligned_cols=22  Identities=27%  Similarity=0.380  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .-|++.|.+|+|||+|+.++..
T Consensus         7 ~KilllG~~~vGKTsll~~~~~   28 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            4578999999999999999854

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.47  E-value=0.0056  Score=45.70  Aligned_cols=20  Identities=40%  Similarity=0.453  Sum_probs=8.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~   25 (329)
                      |+|.|.+|+|||||+..+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67889999999999998875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=94.44  E-value=0.0079  Score=47.31  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=20.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -+++|.|+.|+|||||.+.++.
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~G   47 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAG   47 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCcHHHHHHHHhC
Confidence            5789999999999999998876

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.41  E-value=0.01  Score=44.47  Aligned_cols=21  Identities=19%  Similarity=0.219  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||||...+..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999999875

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=94.24  E-value=0.0088  Score=45.04  Aligned_cols=21  Identities=29%  Similarity=0.515  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||||...+..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEE
T ss_pred             eEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999998753

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.20  E-value=0.015  Score=43.32  Aligned_cols=23  Identities=22%  Similarity=0.338  Sum_probs=20.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      +..|+|.|.+|+|||||...+..
T Consensus         5 ~~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           5 CGFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHhC
Confidence            34688999999999999999975

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.18  E-value=0.013  Score=45.55  Aligned_cols=22  Identities=27%  Similarity=0.368  Sum_probs=19.0

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~   24 (329)
                      .+..++.|++|+|||||...+.
T Consensus        95 ~kt~~~~G~SGVGKSTLiN~L~  116 (225)
T d1u0la2          95 GKISTMAGLSGVGKSSLLNAIN  116 (225)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHS
T ss_pred             CCeEEEECCCCCCHHHHHHhhc
Confidence            3577899999999999999874

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.13  E-value=0.015  Score=48.26  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=28.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      .-.|+|-|.-|+||||+++.+.+.+..+...+.++.
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~~~   40 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLHHFAITPNRILLIG   40 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHHTTTTSGGGEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEe
Confidence            446899999999999999999988766555555554

>d1mkma1 a.4.5.33 (A:1-75) Transcriptional regulator IclR, N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Transcriptional regulator IclR, N-terminal domain
domain: Transcriptional regulator IclR, N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.05  E-value=0.049  Score=34.14  Aligned_cols=66  Identities=14%  Similarity=-0.015  Sum_probs=53.0

Q ss_pred             HhHHHhhhcccCccChhHHHHHHHhCCcchhhhHHHHhhccceeeecCCceeccHHHHHHHHHHHH
Q 020206          226 KNIFLDIACFLVGEDRDIVTKYLNACEFFATSGIEVLVDKSLITISEYNKIRMHDLMRNMGREIVR  291 (329)
Q Consensus       226 ~~~l~~ls~~~~~~~~~~l~~~~~~~~~~~~~~l~~L~~~~Ll~~~~~~~~~~H~lir~~~~~~~~  291 (329)
                      -+++..++--+.+.+...++..++.+.......+..|.+.|+++.+++|.|++=+-+-+++...++
T Consensus         8 l~IL~~~a~~~~~~s~~eia~~~~~~~st~~rll~tL~~~g~l~~~~~g~y~lG~~l~~lg~~~l~   73 (75)
T d1mkma1           8 FEILDFIVKNPGDVSVSEIAEKFNMSVSNAYKYMVVLEEKGFVLRKKDKRYVPGYKLIEYGSFVLR   73 (75)
T ss_dssp             HHHHHHHHHCSSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECTTSCEEECTHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEECCCCCEeecHHHHHHHHHHHh
Confidence            345555666667789999999998888888899999999999998888899987777777766553

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.95  E-value=0.011  Score=44.30  Aligned_cols=21  Identities=24%  Similarity=0.477  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||||...+..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            388999999999999998864

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.85  E-value=0.021  Score=47.25  Aligned_cols=29  Identities=21%  Similarity=0.260  Sum_probs=24.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHhcCC
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKISRRF   31 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~~~~   31 (329)
                      +-.|.|-|+-|+||||+++.+++.+..+.
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l~~~~   34 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAASGGS   34 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGGCSS
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHhccCC
Confidence            35688999999999999999998876554

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.82  E-value=0.019  Score=46.20  Aligned_cols=26  Identities=19%  Similarity=0.139  Sum_probs=23.2

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +.|.|+|.|-.|.|||||+..+....
T Consensus         5 ~iRni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           5 RLRNIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             GEEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hceEEEEEeCCCCCHHHHHHHHHHhc
Confidence            57899999999999999999998653

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=93.51  E-value=0.027  Score=42.16  Aligned_cols=22  Identities=32%  Similarity=0.475  Sum_probs=19.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      =-|+|.|.+|+|||||...+..
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~   30 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILN   30 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHC
Confidence            3478999999999999998875

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.013  Score=43.88  Aligned_cols=22  Identities=14%  Similarity=0.229  Sum_probs=19.4

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~   24 (329)
                      .+-|+|.|.+++|||||...+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~   37 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLT   37 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHh
Confidence            4679999999999999998774

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.12  E-value=0.0088  Score=43.77  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=19.3

Q ss_pred             EEEEcCCCCcHHHHHHHHHHH
Q 020206            6 LGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|.|.+|+|||||+..+...
T Consensus         3 I~liG~~n~GKSSLin~l~g~   23 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNE   23 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999864

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.99  E-value=0.035  Score=44.44  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=21.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .|.|+|.|..|.|||||+..+...
T Consensus         2 iRNv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           2 IRTVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eeEEEEEcCCCCcHHHHHHHHHHH
Confidence            488999999999999999999764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.75  E-value=0.014  Score=45.48  Aligned_cols=21  Identities=29%  Similarity=0.322  Sum_probs=18.1

Q ss_pred             eEEEEEcCCCCcHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~   24 (329)
                      +..++.|++|+|||||...+.
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~  118 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAIS  118 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHC
T ss_pred             ceEEEECCCCccHHHHHHhhc
Confidence            456788999999999999874

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.75  E-value=0.029  Score=45.60  Aligned_cols=20  Identities=5%  Similarity=0.062  Sum_probs=15.8

Q ss_pred             CCceeccHHHHHHHHHHHHh
Q 020206          273 YNKIRMHDLMRNMGREIVRQ  292 (329)
Q Consensus       273 ~~~~~~H~lir~~~~~~~~~  292 (329)
                      ...||.|+-|-++|-.++..
T Consensus       273 ~~nyRs~~~I~~~an~l~~~  292 (306)
T d1uaaa1         273 EQNYRSSGRILKAANILIAN  292 (306)
T ss_dssp             CCBSSSCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHc
Confidence            34599999999999887665

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.41  E-value=0.039  Score=45.16  Aligned_cols=22  Identities=9%  Similarity=0.181  Sum_probs=17.2

Q ss_pred             CCceeccHHHHHHHHHHHHhcC
Q 020206          273 YNKIRMHDLMRNMGREIVRQES  294 (329)
Q Consensus       273 ~~~~~~H~lir~~~~~~~~~~~  294 (329)
                      ...||.|+-|.+++..++....
T Consensus       283 ~~nyRs~~~I~~~an~ll~~~~  304 (318)
T d1pjra1         283 EQNYRSTKRILQAANEVIEHNV  304 (318)
T ss_dssp             CBCSSSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCcHHHHHHHHHHHHcCc
Confidence            3458999999999988877643

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=92.12  E-value=0.04  Score=41.69  Aligned_cols=26  Identities=23%  Similarity=0.232  Sum_probs=22.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      -..++++||++.|||.++..+++-+.
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHhC
Confidence            36789999999999999999888764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=91.27  E-value=0.071  Score=41.40  Aligned_cols=23  Identities=17%  Similarity=0.157  Sum_probs=20.7

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      |+|+|.|-++.|||||+..+...
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~~   28 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRGS   28 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHhh
Confidence            56999999999999999988765

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=91.22  E-value=0.086  Score=36.83  Aligned_cols=37  Identities=16%  Similarity=-0.034  Sum_probs=23.4

Q ss_pred             CceEEEEEcCCCCcHHHHHHHH-HHHHhcCCCceEEEe
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAF-FSKISRRFEGSYFAH   38 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~-~~~~~~~~~~~~~~~   38 (329)
                      +.+.++|+++.|+|||..+... .....+.-..++++.
T Consensus         6 ~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~   43 (140)
T d1yksa1           6 KGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLA   43 (140)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeee
Confidence            3567899999999999766533 444433333444443

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.19  E-value=0.15  Score=38.61  Aligned_cols=35  Identities=17%  Similarity=0.031  Sum_probs=22.2

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +-++|.+|.|+|||+.+....-....+...++++.
T Consensus        41 ~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~   75 (202)
T d2p6ra3          41 KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVV   75 (202)
T ss_dssp             SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCEEEEcCCCCchhHHHHHHHHHHhhccCcceeec
Confidence            45789999999999887543332222334556654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=91.12  E-value=0.1  Score=44.69  Aligned_cols=33  Identities=18%  Similarity=0.099  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEE
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYF   36 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~   36 (329)
                      +=+.|.|.+|+|||+++..++......-..++.
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~ii   83 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVI   83 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEE
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEE
Confidence            347899999999999998887765544333333

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=90.92  E-value=0.2  Score=37.57  Aligned_cols=33  Identities=21%  Similarity=-0.024  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHH-hcCCCceEEEe
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKI-SRRFEGSYFAH   38 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~-~~~~~~~~~~~   38 (329)
                      +.|++|.|.|||..+..++... .+.-..++++.
T Consensus        26 ~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~   59 (200)
T d1wp9a1          26 CLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLA   59 (200)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEEC
T ss_pred             eEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEc
Confidence            5688999999998777665533 22223355544

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=90.87  E-value=0.042  Score=45.25  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=19.8

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ..|.|-|+-|+||||+++.+++.+.
T Consensus         5 lrI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           5 LRVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEEECSCTTSSHHHHHHHHTC---
T ss_pred             eEEEEECCcCCCHHHHHHHHHHHhC
Confidence            3588999999999999999976654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=90.55  E-value=0.09  Score=41.67  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      .-.|+|.|.+|+|||||.-.++.+
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCC
Confidence            346889999999999999999763

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=90.20  E-value=0.18  Score=39.15  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=24.0

Q ss_pred             eEEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            4 CKLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +-++|++|.|+|||..+...+-....+-..++++.
T Consensus        59 ~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~   93 (237)
T d1gkub1          59 ESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIF   93 (237)
T ss_dssp             CCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEE
T ss_pred             CCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEe
Confidence            44678899999999877666655444444555554

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.18  E-value=0.11  Score=41.51  Aligned_cols=25  Identities=28%  Similarity=0.380  Sum_probs=21.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      -..+.++|+|+.|||+++..+.+-+
T Consensus       104 ~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         104 RNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             cEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999887765

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.81  E-value=0.13  Score=35.18  Aligned_cols=25  Identities=12%  Similarity=0.085  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhc
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISR   29 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~   29 (329)
                      +|+++|..|+||+|+|..+...+.+
T Consensus         8 ~i~~tg~~~~gk~~ia~al~~~l~q   32 (122)
T d1g8fa3           8 SIVLGNSLTVSREQLSIALLSTFLQ   32 (122)
T ss_dssp             EEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            6899999999999999999877654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=89.66  E-value=0.098  Score=38.81  Aligned_cols=21  Identities=33%  Similarity=0.521  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      .|+|.|.+++|||||...+.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            589999999999999998864

>d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: ATP:corrinoid adenosyltransferase CobA
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.64  E-value=0.38  Score=34.63  Aligned_cols=33  Identities=18%  Similarity=0.068  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      +.+-+| .|=||||-|.-.+=+...+--.++.+-
T Consensus         5 i~vytG-~GKGKTTAAlG~alRA~G~G~rV~ivQ   37 (157)
T d1g5ta_           5 IIVFTG-NGKGKTTAAFGTAARAVGHGKNVGVVQ   37 (157)
T ss_dssp             EEEEES-SSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             EEEEeC-CCCCcHHHHHHHHHHHhcCCCEEEEEE
Confidence            344455 468999999988776555544455544

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=88.53  E-value=0.2  Score=40.31  Aligned_cols=51  Identities=16%  Similarity=-0.016  Sum_probs=30.3

Q ss_pred             CceEEEEEcCCCCcHHH-HHHHHHHHHhcCCCceEEEeccchhhhcCChHHHHHHHHHHHh
Q 020206            2 DTCKLGIWGIGGVGKTA-IAGAFFSKISRRFEGSYFAHNVREAEETGKLADLRKELLSTLL   61 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTt-La~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   61 (329)
                      +.+.+.|.++.|+|||. .+..+.+.....-..++++.         +...+..++...+.
T Consensus         8 ~~~~~lv~~~TGsGKT~~~l~~~~~~~~~~~~~~lvi~---------Ptr~La~q~~~~l~   59 (305)
T d2bmfa2           8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILA---------PTRVVAAEMEEALR   59 (305)
T ss_dssp             TTCEEEECCCTTSSTTTTHHHHHHHHHHHHTCCEEEEE---------SSHHHHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHHHHHHhcCCEEEEEc---------cHHHHHHHHHHHHh
Confidence            45778999999999995 34344443332223455544         34455566666553

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=88.23  E-value=0.12  Score=41.98  Aligned_cols=20  Identities=25%  Similarity=0.433  Sum_probs=17.1

Q ss_pred             ceEEEEEcCCCCcHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGA   22 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~   22 (329)
                      ..+..+.|.+|+|||||...
T Consensus        14 ~~valffGLSGTGKTTLs~~   33 (318)
T d1j3ba1          14 GDVAVFFGLSGTGKTTLSTD   33 (318)
T ss_dssp             CCEEEEEECTTSCHHHHTCB
T ss_pred             CCEEEEEccCCCCccccccC
Confidence            45778999999999998864

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=88.18  E-value=0.046  Score=41.20  Aligned_cols=23  Identities=26%  Similarity=0.423  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      +.+|+|+.|+||||+...+.--+
T Consensus        26 ~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            55789999999999999987654

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=87.78  E-value=0.14  Score=41.55  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=16.7

Q ss_pred             ceEEEEEcCCCCcHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGA   22 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~   22 (329)
                      ..+..+.|.+|+|||||...
T Consensus        14 gd~alfFGLSGTGKTTLs~d   33 (323)
T d1ii2a1          14 GDVTVFFGLSGTGKTTLSAD   33 (323)
T ss_dssp             CCEEEEECCTTSSHHHHHCC
T ss_pred             CCEEEEEccCCCCcccceeC
Confidence            35677999999999999953

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=87.45  E-value=0.15  Score=41.13  Aligned_cols=19  Identities=26%  Similarity=0.475  Sum_probs=16.2

Q ss_pred             eEEEEEcCCCCcHHHHHHH
Q 020206            4 CKLGIWGIGGVGKTAIAGA   22 (329)
Q Consensus         4 r~v~I~G~~GiGKTtLa~~   22 (329)
                      .+..+.|.+|+|||||...
T Consensus        15 ~~alfFGLSGTGKTTLs~d   33 (313)
T d2olra1          15 DVAVFFGLSGTGKTTLSTD   33 (313)
T ss_dssp             CEEEEECSTTSSHHHHHCC
T ss_pred             CEEEEEccCCCCcccceeC
Confidence            4668999999999999853

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=87.08  E-value=0.13  Score=41.55  Aligned_cols=22  Identities=32%  Similarity=0.321  Sum_probs=18.8

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFF   24 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~   24 (329)
                      .++-+|+|+-|+|||++...+.
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHH
Confidence            3578999999999999987764

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=85.99  E-value=0.88  Score=35.02  Aligned_cols=33  Identities=18%  Similarity=0.007  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      ...|+|..|+|||.++...+.........++..
T Consensus        78 ~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l  110 (233)
T d2eyqa3          78 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL  110 (233)
T ss_dssp             EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEE
Confidence            568999999999999999988765554444444

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.90  E-value=0.23  Score=41.93  Aligned_cols=23  Identities=26%  Similarity=0.268  Sum_probs=19.6

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      ..+-+|+|+-|+|||++...++-
T Consensus        25 ~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          25 SNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            34678999999999999998854

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.89  E-value=0.2  Score=42.37  Aligned_cols=21  Identities=19%  Similarity=0.381  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|.|.+|+|||||...+..
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            489999999999999998864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.38  E-value=0.27  Score=40.47  Aligned_cols=25  Identities=8%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             CceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            2 DTCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         2 ~~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      ..|-|+|.|-.|.|||||+..+...
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll~~   40 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLVQR   40 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHHHH
Confidence            4688999999999999999998764

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=84.11  E-value=0.35  Score=36.56  Aligned_cols=23  Identities=26%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      -|+|.|-++.|||||+.++....
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHh
Confidence            48899999999999999997643

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.00  E-value=0.27  Score=39.21  Aligned_cols=24  Identities=21%  Similarity=0.284  Sum_probs=21.3

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      +.+|+|.|+.++|||+|+-.++..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~   55 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGK   55 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTC
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCC
Confidence            568999999999999999998753

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=83.55  E-value=0.57  Score=34.56  Aligned_cols=30  Identities=17%  Similarity=0.114  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhcCCCceEEEe
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSKISRRFEGSYFAH   38 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~~   38 (329)
                      ++.|+|.+++|||.+|.+++    ..++.+.|+.
T Consensus         1 iiLVtGGarSGKS~~AE~l~----~~~~~~~YiA   30 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALI----GDAPQVLYIA   30 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHH----CSCSSEEEEE
T ss_pred             CEEEECCCCccHHHHHHHHH----hcCCCcEEEE
Confidence            47899999999999998764    4456666665

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.46  E-value=0.87  Score=35.79  Aligned_cols=32  Identities=22%  Similarity=0.023  Sum_probs=23.1

Q ss_pred             EEEEcCCCCcHHHHHHHHHHHHhcCCCceEEE
Q 020206            6 LGIWGIGGVGKTAIAGAFFSKISRRFEGSYFA   37 (329)
Q Consensus         6 v~I~G~~GiGKTtLa~~~~~~~~~~~~~~~~~   37 (329)
                      -.|+|..|+|||-++...+.........+++.
T Consensus       107 rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m  138 (264)
T d1gm5a3         107 RLLQGDVGSGKTVVAQLAILDNYEAGFQTAFM  138 (264)
T ss_dssp             CEEECCSSSSHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             eeeeccccccccHHHHHHHHHHHhcccceeEE
Confidence            47899999999999998887554333334443

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=81.41  E-value=0.45  Score=37.83  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFS   25 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~   25 (329)
                      -|+|+|.|.+|||||-..+..
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~   24 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTK   24 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHC
Confidence            479999999999999998865

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=81.14  E-value=0.46  Score=38.19  Aligned_cols=22  Identities=36%  Similarity=0.489  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Q 020206            5 KLGIWGIGGVGKTAIAGAFFSK   26 (329)
Q Consensus         5 ~v~I~G~~GiGKTtLa~~~~~~   26 (329)
                      -|+|+|.|.+|||||-..+...
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            3899999999999999998863

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=80.09  E-value=0.68  Score=41.93  Aligned_cols=26  Identities=23%  Similarity=0.248  Sum_probs=22.9

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHHh
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKIS   28 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~~   28 (329)
                      ...|+|.|.+|.|||.-++.+.+.+.
T Consensus        86 ~QsIiisGeSGsGKTe~~k~il~yL~  111 (684)
T d1lkxa_          86 NQCVIISGESGAGKTEASKKIMQFLT  111 (684)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999988653

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=80.04  E-value=0.68  Score=42.11  Aligned_cols=25  Identities=28%  Similarity=0.267  Sum_probs=22.2

Q ss_pred             ceEEEEEcCCCCcHHHHHHHHHHHH
Q 020206            3 TCKLGIWGIGGVGKTAIAGAFFSKI   27 (329)
Q Consensus         3 ~r~v~I~G~~GiGKTtLa~~~~~~~   27 (329)
                      ...|+|.|.+|.|||.-++.+.+.+
T Consensus       125 nQsIiisGeSGaGKTe~~k~il~yL  149 (712)
T d1d0xa2         125 NQSLLITGESGAGKTENTKKVIQYL  149 (712)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEeCCCCCCHHHHHHHHHHHH
Confidence            4689999999999999999998765