Citrus Sinensis ID: 020222

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREVHFFYLRFNIVVCVLEVSVHLFAIHLFKGSDLGILMIFRRIC
ccccccEEEccEEEEEcccccEEEEEEEEEccccccEEEEEEcccccEEEEEcccEEEccccEEEEEEEEccccccccccccccEEEEEEEEccccccccccccHHHHccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcc
ccccEEEEcccHccccccccEEEEEEEEEEcccccEEEEEEEccccccEEEcccccEEcccccEEEEEEEEccccccccccccccEEEEEEEEcccccHHHHcHHHHHccccccEEHcEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHcccccHHHHHHHHccHHHHHHHccccHHHHHcccccccccccccccccccccEcccccccHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEHHHHHHHHHHHHHcccHHHHHHHHHHcc
maeelldiqplelKFTFEVKKQSTCVIQlgnksdqcvafkvkttspkkycvrpnvsiikpkaisdftvtmqaqrvappdlqckdkfliqgivvpfgtsdeditsdmfakdsgkyveEKKLRVIlmsppqspvllprngelkqdsspetslqkdralsgvenippgdgvaanaEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLreakdvqtfessKDIDELISAaedeqsrpaedaselkpaKDILELKLAKDFEELKLKLNVMDSQLREVHFFYLRFNIVVCVLEVSVHLFAIHLFKGSDLGILMIFRRIC
maeelldiqpleLKFTFEVKKQSTCViqlgnksdqcvafkvkttspkkycvrpnvsiikpkaiSDFTVTMQAQRVappdlqckdKFLIQGIVVPfgtsdeditsdMFAKDSGKYVEEKKLRVILMsppqspvllprngelkqdsspetslqkdralSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKerdesraakdvqmfgttnvtnklreakdvqtfesskDIDELISAaedeqsrpaedaselkpakDILELKLAKDFEELKLKLNVMDSQLREVHFFYLRFNIVVCVLEVSVHLFAIhlfkgsdlgiLMIFRRIC
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREVHFFYLRFNIVVCVLEVSVHLFAIHLFKGSDLGILMIFRRIC
*****LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFA*****YV***KLRVI*************************************************EVFETAKFAD*******************************************************************************ILELKLAKDFEELKLKLNVMDSQLREVHFFYLRFNIVVCVLEVSVHLFAIHLFKGSDLGILMIFRRI*
*AEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDIT****AKDSGKYVEEKKLRVIL**********************************************************************************************************************************************************************FYLRFNIVVCVLEVSVHLFAIHLFKGSDLGILMIFRRIC
MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNG***************RALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLEN**********KDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISA**************LKPAKDILELKLAKDFEELKLKLNVMDSQLREVHFFYLRFNIVVCVLEVSVHLFAIHLFKGSDLGILMIFRRIC
**EELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPP***********************************************************K***********************************K***T**********I**A*****************KDILELKLAKDFEELKLKLNVMDSQLREVHFFYLRFNIVVCVLEVSVHLFAIHLFKGSDLGILMIFRRIC
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MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREVHFFYLRFNIVVCVLEVSVHLFAIHLFKGSDLGILMIFRRIC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
B9DHD7386 Vesicle-associated protei yes no 0.844 0.720 0.397 5e-48
Q9SHC8239 Vesicle-associated protei no no 0.568 0.782 0.471 8e-42
Q8VZ95256 Vesicle-associated protei no no 0.440 0.566 0.503 1e-38
Q84WW5239 Vesicle-associated protei no no 0.437 0.602 0.513 7e-37
Q9LVU1220 Vesicle-associated protei no no 0.376 0.563 0.540 1e-31
Q9SYC9571 Vesicle-associated protei no no 0.458 0.264 0.424 2e-29
O82213149 Vesicle-associated protei no no 0.361 0.798 0.512 5e-29
O60119383 Vesicle-associated membra yes no 0.465 0.399 0.325 5e-13
P40075244 Vesicle-associated membra yes no 0.367 0.495 0.362 6e-12
A2VDZ9243 Vesicle-associated membra yes no 0.291 0.395 0.408 1e-11
>sp|B9DHD7|VAP22_ARATH Vesicle-associated protein 2-2 OS=Arabidopsis thaliana GN=PVA22 PE=1 SV=1 Back     alignment and function desciption
 Score =  191 bits (486), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 132/332 (39%), Positives = 181/332 (54%), Gaps = 54/332 (16%)

Query: 1   MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
           M   LLDIQP  L+F  ++KKQ++CV+QL N +   VAFKVKTTSPKKYCVRPNV ++ P
Sbjct: 1   MNMPLLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAP 60

Query: 61  KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKL 120
           K+  +FTV MQA +  PPD+ CKDKFLIQ   V   T+DEDIT+ MF+K  GK++EE KL
Sbjct: 61  KSTCEFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKL 120

Query: 121 RVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPP----GDGV-------- 168
           RV L+ P  SP L P N   KQ +  E S+ KDR  S  E + P    G+ V        
Sbjct: 121 RVTLVPPSDSPELSPINTP-KQGAVFEDSILKDRLYSQSETLAPPQYEGEIVKEPRMVGH 179

Query: 169 -----AANAEVFETAKF-----------ADELTETKD------------LQWLENAKERD 200
                A NA+  +T K            A++L  TKD               + + K+ D
Sbjct: 180 DELKAADNAKELKTPKMATVDFVEDRYTANDLKATKDSYDSSRMAKETGFDPIRSHKDAD 239

Query: 201 ESRAAKDVQMFGTTNVTNKLREAKDV---QTFESSKDIDE--LISAAEDEQSRPAEDASE 255
           + RA K      TTN+   +++A D+   Q F +   +D    IS   D       D   
Sbjct: 240 DGRAIK-----ATTNLDAPMKKAMDLPRDQGFTNGIAVDSEPKISKERDVVQLQKTDGQN 294

Query: 256 LKPAKDILELKLAKDFEELKLKLNVMDSQLRE 287
           +   + + ELKL KD EE+KLK++ ++S+L++
Sbjct: 295 V---RGLDELKLVKDIEEMKLKVDALESKLKQ 323
May play a role in vesicle trafficking.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SHC8|VAP12_ARATH Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1 Back     alignment and function description
>sp|Q8VZ95|VAP11_ARATH Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1 Back     alignment and function description
>sp|Q84WW5|VAP13_ARATH Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1 Back     alignment and function description
>sp|Q9LVU1|VAP21_ARATH Vesicle-associated protein 2-1 OS=Arabidopsis thaliana GN=PVA21 PE=2 SV=1 Back     alignment and function description
>sp|Q9SYC9|VAP14_ARATH Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1 Back     alignment and function description
>sp|O82213|VAP31_ARATH Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1 Back     alignment and function description
>sp|O60119|YH75_SCHPO Vesicle-associated membrane protein-associated protein C16G5.05c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC16G5.05c PE=1 SV=1 Back     alignment and function description
>sp|P40075|SCS2_YEAST Vesicle-associated membrane protein-associated protein SCS2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SCS2 PE=1 SV=3 Back     alignment and function description
>sp|A2VDZ9|VAPB_BOVIN Vesicle-associated membrane protein-associated protein B OS=Bos taurus GN=VAPB PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
449432791340 PREDICTED: vesicle-associated protein 2- 0.866 0.838 0.535 2e-74
225432396293 PREDICTED: vesicle-associated protein 2- 0.723 0.812 0.529 2e-72
359806816295 uncharacterized protein LOC100801987 [Gl 0.732 0.816 0.5 3e-71
358248386295 uncharacterized protein LOC100794670 [Gl 0.732 0.816 0.503 1e-70
255551631304 vesicle-associated membrane protein, put 0.705 0.763 0.517 1e-70
357478585306 Vesicle-associated membrane protein-asso 0.711 0.764 0.512 8e-70
217072786306 unknown [Medicago truncatula] 0.711 0.764 0.508 1e-68
225451130336 PREDICTED: vesicle-associated protein 2- 0.805 0.788 0.498 5e-63
449517920394 PREDICTED: vesicle-associated protein 2- 0.872 0.728 0.389 1e-50
449442873394 PREDICTED: vesicle-associated protein 2- 0.872 0.728 0.386 2e-50
>gi|449432791|ref|XP_004134182.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] gi|449495402|ref|XP_004159830.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] Back     alignment and taxonomy information
 Score =  285 bits (730), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 158/295 (53%), Positives = 199/295 (67%), Gaps = 10/295 (3%)

Query: 1   MAEELLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKP 60
           M  EL +IQP ELKFTFE+KKQS+C+IQL NKS+Q +AFKVKTTSPKKYCVRPN  IIKP
Sbjct: 1   MTMELFEIQPAELKFTFELKKQSSCLIQLINKSEQHIAFKVKTTSPKKYCVRPNTGIIKP 60

Query: 61  KAISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKL 120
           K   DFTVTM AQR APPD+QCKDKFL+QG V+  GTS+EDITSD+FAKDSGK++EEKKL
Sbjct: 61  KNTCDFTVTMLAQRTAPPDMQCKDKFLVQGTVISPGTSEEDITSDVFAKDSGKHIEEKKL 120

Query: 121 RVILMSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKF 180
           +V L S   +PVLLP NGELK DS+ ETS+ +DR  +GVENIPP   VA ++   +T K 
Sbjct: 121 KVFLASATPTPVLLPINGELKLDSNHETSMPRDRMQTGVENIPPPSKVAEDSNGLDTRKH 180

Query: 181 ADELTETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELIS 240
            DEL        L         + A+ V+   T    ++   A++V T  S     E+  
Sbjct: 181 IDELRPVDTPVSLSPP-----YKVAEGVEKIDTCKDADENGAAENVPTRRS-----EVAE 230

Query: 241 AAEDEQSRPAEDASELKPAKDILELKLAKDFEELKLKLNVMDSQLREVHFFYLRF 295
           + E+ ++ PAE   E K +KD+ EL L KDF+ELK KL +MD++L E     +R 
Sbjct: 231 SVENIETMPAEGIEESKLSKDLPELNLTKDFQELKSKLALMDAELLEAEATIMRL 285

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432396|ref|XP_002277190.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|297736920|emb|CBI26121.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359806816|ref|NP_001241309.1| uncharacterized protein LOC100801987 [Glycine max] gi|255641982|gb|ACU21258.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|358248386|ref|NP_001239873.1| uncharacterized protein LOC100794670 [Glycine max] gi|255634614|gb|ACU17669.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255551631|ref|XP_002516861.1| vesicle-associated membrane protein, putative [Ricinus communis] gi|223543949|gb|EEF45475.1| vesicle-associated membrane protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357478585|ref|XP_003609578.1| Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] gi|355510633|gb|AES91775.1| Vesicle-associated membrane protein-associated protein SCS2 [Medicago truncatula] Back     alignment and taxonomy information
>gi|217072786|gb|ACJ84753.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|225451130|ref|XP_002266266.1| PREDICTED: vesicle-associated protein 2-2 [Vitis vinifera] gi|298204983|emb|CBI34290.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449517920|ref|XP_004165992.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449442873|ref|XP_004139205.1| PREDICTED: vesicle-associated protein 2-2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
TAIR|locus:2025585386 VAP27-2 "vamp/synaptobrevin-as 0.768 0.655 0.414 7.3e-43
TAIR|locus:2055557239 PVA12 "plant VAP homolog 12" [ 0.568 0.782 0.471 9.6e-41
TAIR|locus:2101766256 VAP27-1 "VAMP/SYNAPTOBREVIN-AS 0.440 0.566 0.503 4.9e-37
TAIR|locus:2126921239 AT4G00170 [Arabidopsis thalian 0.434 0.598 0.523 4.4e-36
TAIR|locus:2171594220 AT5G47180 [Arabidopsis thalian 0.376 0.563 0.540 4.2e-31
TAIR|locus:2008231 637 AT1G51270 [Arabidopsis thalian 0.489 0.252 0.416 2.7e-29
TAIR|locus:2061461149 AT2G23830 [Arabidopsis thalian 0.361 0.798 0.512 1.9e-28
SGD|S000000922244 SCS2 "Integral ER membrane pro 0.471 0.635 0.322 1.8e-15
POMBASE|SPBC16G5.05c383 SPBC16G5.05c "VAP family prote 0.720 0.618 0.300 5.3e-15
UNIPROTKB|Q6P7K7242 vapb "Putative uncharacterized 0.586 0.797 0.300 1.2e-14
TAIR|locus:2025585 VAP27-2 "vamp/synaptobrevin-associated protein 27-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
 Identities = 111/268 (41%), Positives = 154/268 (57%)

Query:     5 LLDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAIS 64
             LLDIQP  L+F  ++KKQ++CV+QL N +   VAFKVKTTSPKKYCVRPNV ++ PK+  
Sbjct:     5 LLDIQPRTLQFAVDLKKQTSCVVQLTNTTHHYVAFKVKTTSPKKYCVRPNVGVVAPKSTC 64

Query:    65 DFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVIL 124
             +FTV MQA +  PPD+ CKDKFLIQ   V   T+DEDIT+ MF+K  GK++EE KLRV L
Sbjct:    65 EFTVIMQAFKEPPPDMVCKDKFLIQSTAVSAETTDEDITASMFSKAEGKHIEENKLRVTL 124

Query:   125 MSPPQSPVLLPRNGELKQDSSPETSLQKDRALSGVENIPPGDGVAANAEVFETAKFADEL 184
             + P  SP L P N   KQ +  E S+ KDR  S  E + P        E+ +  +     
Sbjct:   125 VPPSDSPELSPINTP-KQGAVFEDSILKDRLYSQSETLAPPQ---YEGEIVKEPRMVGH- 179

Query:   185 TETKDLQWLENAKERDESRAAKDVQMFGTTNVTNKLREAKDVQTFESSKDIDELISAAED 244
                 +L+  +NAKE    + A  V         N L+  KD  +++SS+   E  +  + 
Sbjct:   180 ---DELKAADNAKELKTPKMAT-VDFVEDRYTANDLKATKD--SYDSSRMAKE--TGFDP 231

Query:   245 EQS-RPAEDASELKPAKDI-LELKLAKD 270
              +S + A+D   +K   ++   +K A D
Sbjct:   232 IRSHKDADDGRAIKATTNLDAPMKKAMD 259
GO:0005198 "structural molecule activity" evidence=IEA
GO:0005789 "endoplasmic reticulum membrane" evidence=IDA
GO:0046907 "intracellular transport" evidence=TAS
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2055557 PVA12 "plant VAP homolog 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101766 VAP27-1 "VAMP/SYNAPTOBREVIN-ASSOCIATED PROTEIN 27-1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126921 AT4G00170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2171594 AT5G47180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008231 AT1G51270 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061461 AT2G23830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
SGD|S000000922 SCS2 "Integral ER membrane protein, regulates phospholipid metabolism" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
POMBASE|SPBC16G5.05c SPBC16G5.05c "VAP family protein (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P7K7 vapb "Putative uncharacterized protein MGC76271" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00019831001
SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (293 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
pfam00635109 pfam00635, Motile_Sperm, MSP (Major sperm protein) 4e-26
COG5066242 COG5066, SCS2, VAMP-associated protein involved in 1e-17
>gnl|CDD|201362 pfam00635, Motile_Sperm, MSP (Major sperm protein) domain Back     alignment and domain information 
 Score = 99.7 bits (249), Expect = 4e-26
 Identities = 45/108 (41%), Positives = 54/108 (50%), Gaps = 2/108 (1%)

Query: 5   LLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAI 63
           LL I P   L F     KQ T  + L N SD+ VAFKVKTT+PK+Y VRPN  I+KP   
Sbjct: 1   LLTIDPPDLLFFAAPGDKQGTSTLTLTNPSDKRVAFKVKTTNPKRYRVRPNYGILKPGES 60

Query: 64  SDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKDS 111
              T+T Q     P D + KDKF+IQ    P    D         K+ 
Sbjct: 61  VTITITRQPFDKEPGDPK-KDKFVIQYTEAPDDAKDAKEAFKRAWKNG 107

Major sperm proteins are involved in sperm motility. These proteins oligomerise to form filaments. This family contains many other proteins. Length = 109
>gnl|CDD|227398 COG5066, SCS2, VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
COG5066242 SCS2 VAMP-associated protein involved in inositol 99.91
KOG0439218 consensus VAMP-associated protein involved in inos 99.91
PF00635109 Motile_Sperm: MSP (Major sperm protein) domain; In 99.87
PF14874102 PapD-like: Flagellar-associated PapD-like 98.47
PF00345122 PapD_N: Pili and flagellar-assembly chaperone, Pap 96.76
PF14646426 MYCBPAP: MYCBP-associated protein family 92.37
PRK09918230 putative fimbrial chaperone protein; Provisional 92.32
PRK09926246 putative chaperone protein EcpD; Provisional 91.3
PRK15249253 fimbrial chaperone protein StbB; Provisional 91.15
PRK15246233 fimbrial assembly chaperone StbE; Provisional 89.02
PF0761045 DUF1573: Protein of unknown function (DUF1573); In 88.93
PRK11385236 putativi pili assembly chaperone; Provisional 88.63
PRK15295226 fimbrial assembly chaperone SthB; Provisional 87.45
PRK15299227 fimbrial chaperone protein StiB; Provisional 87.32
PF11614118 FixG_C: IG-like fold at C-terminal of FixG, putati 87.23
PRK15211229 fimbrial chaperone protein PefD; Provisional 86.47
PRK15290243 lfpB fimbrial chaperone protein; Provisional 85.29
PRK15192234 fimbrial chaperone BcfG; Provisional 83.85
PRK15208228 long polar fimbrial chaperone LpfB; Provisional 83.8
PRK15188228 fimbrial chaperone protein BcfB; Provisional 80.94
COG3121235 FimC P pilus assembly protein, chaperone PapD [Cel 80.89
PRK15254239 fimbrial chaperone protein StdC; Provisional 80.25
>COG5066 SCS2 VAMP-associated protein involved in inositol metabolism [Intracellular trafficking and secretion] Back     alignment and domain information 
Probab=99.91  E-value=2e-24  Score=197.72  Aligned_cols=123  Identities=35%  Similarity=0.609  Sum_probs=111.4

Q ss_pred             eEEeCCeeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCC-CCCCCCC
Q 020222            6 LDIQPLELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAP-PDLQCKD   84 (329)
Q Consensus         6 L~I~P~EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P-~d~~~kD   84 (329)
                      |.++|.- .|..|++...++.+.|.|++.++|+||||||+|+.||||||.|.|.|++++.|+|+||++++.| +|++|+|
T Consensus         3 veisp~~-~fy~Plt~~ske~~sv~NnspepvgfKVKTTaPK~YcVRPN~g~Iep~stv~VeVilq~l~eEpapdfKCrd   81 (242)
T COG5066           3 VEISPQT-TFYVPLTNKSKEMFSVQNNSPEPVGFKVKTTAPKDYCVRPNMGLIEPMSTVEVEVILQGLTEEPAPDFKCRD   81 (242)
T ss_pred             eEecCce-EEecccccccceeeEeecCCCCceeEEeeccCCcceeEcCCCceeccCCeeEEEEEeeccccCCCCCccccc
Confidence            5677754 5667999999999999999999999999999999999999999999999999999999998876 6899999


Q ss_pred             eEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCCCC
Q 020222           85 KFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQS  130 (329)
Q Consensus        85 KFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~~s  130 (329)
                      |||||++..+...+..++. ++|....+..+.+.||+|+|.....+
T Consensus        82 KFLiqs~~~~~~l~g~d~a-d~wt~~sk~~i~~rkIrcvyse~~is  126 (242)
T COG5066          82 KFLIQSYRFDWRLSGSDFA-DHWTSSSKKPIWTRKIRCVYSEEEIS  126 (242)
T ss_pred             eeEEEEeccChhhccchHH-HHHHhhccccchhhheeEEeeccccC
Confidence            9999999999988888886 89999888889999999999954443

>KOG0439 consensus VAMP-associated protein involved in inositol metabolism [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF00635 Motile_Sperm: MSP (Major sperm protein) domain; InterPro: IPR000535 Major sperm proteins (MSP) are central components in molecular interactions underlying sperm motility in Caenorhabditis elegans, whose sperm employ an amoebae-like crawling motion using a MSP-containing lamellipod, rather than the flagellar-based swimming motion associated with other sperm Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF00345 PapD_N: Pili and flagellar-assembly chaperone, PapD N-terminal domain; InterPro: IPR016147 Most Gram-negative bacteria possess a supramolecular structure - the pili - on their surface, which mediates attachment to specific receptors Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information
>PRK09918 putative fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK09926 putative chaperone protein EcpD; Provisional Back     alignment and domain information
>PRK15249 fimbrial chaperone protein StbB; Provisional Back     alignment and domain information
>PRK15246 fimbrial assembly chaperone StbE; Provisional Back     alignment and domain information
>PF07610 DUF1573: Protein of unknown function (DUF1573); InterPro: IPR011467 These hypothetical proteins from bacteria, such as Rhodopirellula baltica, Bacteroides thetaiotaomicron and Porphyromonas gingivalis, share a region of conserved sequence towards their N termini Back     alignment and domain information
>PRK11385 putativi pili assembly chaperone; Provisional Back     alignment and domain information
>PRK15295 fimbrial assembly chaperone SthB; Provisional Back     alignment and domain information
>PRK15299 fimbrial chaperone protein StiB; Provisional Back     alignment and domain information
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A Back     alignment and domain information
>PRK15211 fimbrial chaperone protein PefD; Provisional Back     alignment and domain information
>PRK15290 lfpB fimbrial chaperone protein; Provisional Back     alignment and domain information
>PRK15192 fimbrial chaperone BcfG; Provisional Back     alignment and domain information
>PRK15208 long polar fimbrial chaperone LpfB; Provisional Back     alignment and domain information
>PRK15188 fimbrial chaperone protein BcfB; Provisional Back     alignment and domain information
>COG3121 FimC P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>PRK15254 fimbrial chaperone protein StdC; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3ikk_A127 Crystal Structure Analysis Of Msp Domain Length = 1 1e-12
2rr3_A130 Solution Structure Of The Complex Between Human Vap 7e-12
2cri_A147 Solution Structure Of The Msp Domain Of Mouse Vamp- 8e-12
1z9o_A128 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp 2e-11
1z9l_A128 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp 5e-11
1wic_A152 Solution Structure Of The Msp Domain Of Riken Cdna 5e-05
>pdb|3IKK|A Chain A, Crystal Structure Analysis Of Msp Domain Length = 127 Back     alignment and structure 
Iteration: 1

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/98 (40%), Positives = 59/98 (60%), Gaps = 2/98 (2%)
Query: 3   EELLDIQP-LELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPK 61
           E++L ++P  ELKF        T  ++LGN +D+ V FKVKTT+P++YCVRPN  II   
Sbjct: 7   EQVLSLEPQHELKFRGPFTDVVTTNLKLGNPTDRNVCFKVKTTAPRRYCVRPNSGIIDAG 66
Query: 62  AISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSD 99
           A  + +V +Q      P+ + K KF++Q +  P  TSD
Sbjct: 67  ASINVSVMLQPFDYD-PNEKSKHKFMVQSMFAPTDTSD 103
>pdb|2RR3|A Chain A, Solution Structure Of The Complex Between Human Vap-A Msp Domain And Human Osbp Ffat Motif Length = 130 Back     alignment and structure
>pdb|2CRI|A Chain A, Solution Structure Of The Msp Domain Of Mouse Vamp- Associated Proteina Length = 147 Back     alignment and structure
>pdb|1Z9O|A Chain A, 1.9 Angstrom Crystal Structure Of The Rat Vap-a Msp Homology Domain In Complex With The Rat Orp1 Ffat Motif Length = 128 Back     alignment and structure
>pdb|1Z9L|A Chain A, 1.7 Angstrom Crystal Structure Of The Rat Vap-A Msp Homology Domain Length = 128 Back     alignment and structure
>pdb|1WIC|A Chain A, Solution Structure Of The Msp Domain Of Riken Cdna 6030424e15 Length = 152 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 1e-32
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 5e-32
2cri_A147 Vesicle-associated membrane protein-associated pro 5e-30
1z9l_A128 Vesicle-associated membrane protein-associated pro 3e-29
1m1s_A116 WR4; structural genomics, major sperm protein, bio 1e-24
1row_A109 SSP-19, MSP-domain protein like family member; bet 1e-21
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-04
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Length = 152 Back     alignment and structure
 Score =  117 bits (295), Expect = 1e-32
 Identities = 38/138 (27%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 4   ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
            LL I P  EL F      +   +I L N +   VAFKV+TT+P+KY V+P+ S   P A
Sbjct: 17  PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 63  ISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKD-SGKYVEEKKLR 121
             D  V+          +  +D+FLI    +   +         F K+     V E +LR
Sbjct: 77  SIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLR 132

Query: 122 VILMSPPQSPVLLPRNGE 139
              +   +   L+     
Sbjct: 133 CHTVESSKPNSLMLSGPS 150
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Length = 126 Back     alignment and structure
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Length = 147 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Length = 128 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 116 Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Length = 109 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
2cri_A147 Vesicle-associated membrane protein-associated pro 99.98
1wic_A152 Hypothetical protein riken cDNA 6030424E15; beta s 99.97
1z9l_A128 Vesicle-associated membrane protein-associated pro 99.97
1msp_A126 MSP, major sperm protein; cytoskeletal protein, ce 99.96
1row_A109 SSP-19, MSP-domain protein like family member; bet 99.93
1m1s_A116 WR4; structural genomics, major sperm protein, bio 99.92
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 98.21
3qbt_B140 Inositol polyphosphate 5-phosphatase OCRL-1; prote 97.97
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 97.86
3qis_A366 Inositol polyphosphate 5-phosphatase OCRL-1; DENT 97.45
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 95.88
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 94.92
3q48_A257 Chaperone CUPB2; IG fold, periplasmic chaperone; 2 91.49
2co7_B221 SAFB chaperone, putative fimbriae assembly chapero 89.43
2xg5_A218 PAPD, chaperone protein PAPD; chaperone, chaperone 89.34
1klf_A205 FIMC chaperone, chaperone protein FIMC; adhesin-ch 87.28
4djm_A239 DRAB; chaperone, PILI; 2.52A {Escherichia coli} 85.37
1l4i_A206 SFAE protein; periplasmic chaperone, immunoglobuli 85.24
1yew_A382 Particulate methane monooxygenase, B subunit; memb 82.55
>2cri_A Vesicle-associated membrane protein-associated protein A; VAP-A, VAP-33, beta sandwitch fold, structural genomics, NPPSFA; NMR {Mus musculus} Back     alignment and structure
Probab=99.98  E-value=2.2e-31  Score=229.54  Aligned_cols=125  Identities=34%  Similarity=0.574  Sum_probs=113.5

Q ss_pred             cceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCC
Q 020222            4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC   82 (329)
Q Consensus         4 ~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~   82 (329)
                      .+|.|+|. +|.|.+|+++.++|.|+|+|+++++||||||||+|++|+|||+.|+|.||+++.|.|+|+++...| ++++
T Consensus        13 ~~L~i~P~~~L~F~~p~~~~~~~~l~L~N~s~~~VaFKVKTT~p~~y~VrP~~GiI~P~~s~~v~V~l~~~~~~p-~~~~   91 (147)
T 2cri_A           13 QILVLDPPSDLKFKGPFTDVVTTNLKLQNPSDRKVCFKVKTTAPRRYCVRPNSGIIDPGSIVTVSVMLQPFDYDP-NEKS   91 (147)
T ss_dssp             CCSEEESSSEEEEECCSSSCCCEEEEEECCSSSCEEEEEEESCTTSEEEESSEEECCTTCEEEEEEEECCCCCCT-TCCS
T ss_pred             CeEEECCCCeEEEeCCCCceEEEEEEEECCCCCcEEEEEECCCCccEEEcCCCcEECCCCeEEEEEEECCCcCCc-cccC
Confidence            58999996 899999999999999999999999999999999999999999999999999999999999986544 5689


Q ss_pred             CCeEEEEEEEeCCCCCccchhhhhhcccCCCceeEEEeEEEEeCCCCCCC
Q 020222           83 KDKFLIQGIVVPFGTSDEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPV  132 (329)
Q Consensus        83 kDKFLVQs~~vp~~~t~~di~~eiWkk~~k~~I~e~KLrVvf~~p~~sp~  132 (329)
                      +|||+||++.++++.+  ++ .++|++..+..++++||+|+|+.|++++.
T Consensus        92 kDKFlVqs~~~~~~~~--d~-~~~wk~~~~~~i~e~kLrv~f~~p~~~~~  138 (147)
T 2cri_A           92 KHKFMVQTIFAPPNIS--DM-EAVWKEAKPDELMDSKLRCVFEMPNENDK  138 (147)
T ss_dssp             CCCEEEEEEECCTTCC--CH-HHHHHHSCTTTCEEEEEEEEEECSCCSSC
T ss_pred             CCEEEEEEEEcCCCcc--cH-HHHhhcCCCCceEEEEEEEEEecCCCCcc
Confidence            9999999999998653  44 48999888888999999999998877643
>1wic_A Hypothetical protein riken cDNA 6030424E15; beta sandwich fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.1.11.2 Back     alignment and structure
>1z9l_A Vesicle-associated membrane protein-associated protein A; VAP-A, cytoplasmic domain, protein binding; HET: MSE; 1.70A {Rattus norvegicus} PDB: 1z9o_A 2rr3_A 3ikk_A Back     alignment and structure
>1msp_A MSP, major sperm protein; cytoskeletal protein, cell motility protein; 2.50A {Ascaris suum} SCOP: b.1.11.2 PDB: 3msp_A 2bvu_A 2msp_A 1grw_A Back     alignment and structure
>1row_A SSP-19, MSP-domain protein like family member; beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>1m1s_A WR4; structural genomics, major sperm protein, bioinformatics, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: b.1.11.2 Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qbt_B Inositol polyphosphate 5-phosphatase OCRL-1; protein transport, vesicular trafficking, GTPase, LOWE syndr immunoglobulin fold, RAB8A, endocytosis; HET: GNP; 2.00A {Homo sapiens} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3qis_A Inositol polyphosphate 5-phosphatase OCRL-1; DENT disease, RAC1, RAB gtpases, APPL1, endocytic PATH golgi complex, hydrolase-protein binding complex; 2.30A {Homo sapiens} PDB: 2qv2_A Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
>3q48_A Chaperone CUPB2; IG fold, periplasmic chaperone; 2.50A {Pseudomonas aeruginosa} Back     alignment and structure
>2co7_B SAFB chaperone, putative fimbriae assembly chaperone; pilus subunit, adhesion, strand complementation, pathogenesis, fibril protein; 1.8A {Salmonella typhimurium} SCOP: b.1.11.1 b.7.2.1 PDB: 2co6_B Back     alignment and structure
>2xg5_A PAPD, chaperone protein PAPD; chaperone, chaperone-surface active protein complex; HET: EC2 EC5; 2.00A {Escherichia coli} PDB: 1pdk_A 2uy6_A 2uy7_A 2j2z_A 2xg4_A* 2w07_A* 3me0_A* 1n0l_A 2wmp_A 3dpa_A 2j7l_A 1qpp_A 1qpx_A Back     alignment and structure
>1klf_A FIMC chaperone, chaperone protein FIMC; adhesin-chaperone complex, mannose-bound, chaperone/adhesin complex complex; HET: MAN; 2.79A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 PDB: 1kiu_A* 3rfz_C 1qun_A 1bf8_A 1ze3_C 3bwu_C 3jwn_C Back     alignment and structure
>4djm_A DRAB; chaperone, PILI; 2.52A {Escherichia coli} Back     alignment and structure
>1l4i_A SFAE protein; periplasmic chaperone, immunoglobulin fold; 2.20A {Escherichia coli} SCOP: b.1.11.1 b.7.2.1 Back     alignment and structure
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d1wica_152 b.1.11.2 (A:) MSP domain containing protein 2, Mos 8e-33
d1grwa_124 b.1.11.2 (A:) Major sperm protein, MSP {Nematode ( 3e-30
d1m1sa_109 b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegan 3e-22
d1rowa_107 b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis ele 2e-21
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 152 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  116 bits (293), Expect = 8e-33
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 6/130 (4%)

Query: 4   ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKA 62
            LL I P  EL F      +   +I L N +   VAFKV+TT+P+KY V+P+ S   P A
Sbjct: 17  PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGA 76

Query: 63  ISDFTVTMQAQRVAPPDLQCKDKFLIQGIVVPFGTSDEDITSDMFAKD-SGKYVEEKKLR 121
             D  V+          +  +D+FLI    +   +         F K+     V E +LR
Sbjct: 77  SIDIIVSPHGG----LTVSAQDRFLIMAAEMEQSSGTGPAELSQFWKEVPRNKVMEHRLR 132

Query: 122 VILMSPPQSP 131
              +   +  
Sbjct: 133 CHTVESSKPN 142
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 124 Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 109 Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 107 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d1wica_152 MSP domain containing protein 2, Mospd2 {Mouse (Mu 99.96
d1grwa_124 Major sperm protein, MSP {Nematode (Caenorhabditis 99.96
d1m1sa_109 WR4 {Nematode (Caenorhabditis elegans) [TaxId: 623 99.88
d1rowa_107 SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 99.88
d2co7b1128 Periplasmic chaperone SafB {Salmonella typhimurium 94.43
d1p5va1141 Chaperone protein Caf1m {Yersinia pestis [TaxId: 6 93.5
d3bwuc1121 Periplasmic chaperone FimC {Escherichia coli [TaxI 92.68
d2j2za1124 Pilus chaperone PapD, N-domain {Escherichia coli [ 91.89
>d1wica_ b.1.11.2 (A:) MSP domain containing protein 2, Mospd2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: PapD-like
family: MSP-like
domain: MSP domain containing protein 2, Mospd2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6e-29  Score=214.19  Aligned_cols=125  Identities=29%  Similarity=0.416  Sum_probs=111.5

Q ss_pred             cceEEeCC-eeEEeccCCCeeEEEEEEEcCCCCeEEEEEeeCCCCcEEEeCCceeeCCCCeEEEEEeecccccCCCCCCC
Q 020222            4 ELLDIQPL-ELKFTFEVKKQSTCVIQLGNKSDQCVAFKVKTTSPKKYCVRPNVSIIKPKAISDFTVTMQAQRVAPPDLQC   82 (329)
Q Consensus         4 ~LL~I~P~-EL~F~~p~~k~~s~~LtLtN~S~~~VAFKVKTTaP~rY~VRPn~GiI~Pgesv~V~ItLq~~~~~P~d~~~   82 (329)
                      +||.|+|. +|+|.+++++..+|.|+|+|+++++||||||||+|++|+|+|++|+|.||+++.|.|++++..    .+.+
T Consensus        17 ~lL~i~P~~~L~F~~~~~~~~~~~l~l~N~s~~~vaFKiktt~p~~y~V~P~~G~i~p~~~~~I~v~~~~~~----~~~~   92 (152)
T d1wica_          17 PLLHISPAEELYFGSIESGEKKTLIVLTNVTKNIVAFKVRTTAPEKYRVKPSNSSCDPGASIDIIVSPHGGL----TVSA   92 (152)
T ss_dssp             SSBCBBSSSCBCCCCSSSSCCCEEEEEEBCSSSCEEEEEEESCTTTEEEESSEEEECTTCEEEEEEEECSSS----CCCS
T ss_pred             CeEEEcCCCCeEeCCCCCCeEEEEEEEECCCCCeEEEEEEcCCCccEEEECCceEECCCCEEEEEEEECCCC----cccC
Confidence            58999996 799999999999999999999999999999999999999999999999999999999998753    3578


Q ss_pred             CCeEEEEEEEeCCCCC--ccchhhhhhcccCCCceeEEEeEEEEeCCCCCCCc
Q 020222           83 KDKFLIQGIVVPFGTS--DEDITSDMFAKDSGKYVEEKKLRVILMSPPQSPVL  133 (329)
Q Consensus        83 kDKFLVQs~~vp~~~t--~~di~~eiWkk~~k~~I~e~KLrVvf~~p~~sp~~  133 (329)
                      +|||+|+++.+++..+  ..++. ++|+...+..++++||+|+|+.++.++++
T Consensus        93 kdKFli~~~~v~~~~~~~~~d~~-~~wk~~~~~~i~~~kLkv~~~~~~~p~s~  144 (152)
T d1wica_          93 QDRFLIMAAEMEQSSGTGPAELS-QFWKEVPRNKVMEHRLRCHTVESSKPNSL  144 (152)
T ss_dssp             SCCEEEEEEECCSSCCCSHHHHH-HHHHHSCTTTCEEEEECBCCCCSCSSSSS
T ss_pred             CCcEEEEEEEeCCCCCCCccCHH-HHhhcCCcCcEEEEEEEEEEeCCCCCCCc
Confidence            9999999999987543  34554 79998888899999999999999887554
>d1grwa_ b.1.11.2 (A:) Major sperm protein, MSP {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1m1sa_ b.1.11.2 (A:) WR4 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1rowa_ b.1.11.2 (A:) SSP-19 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d2co7b1 b.1.11.1 (B:8-135) Periplasmic chaperone SafB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1p5va1 b.1.11.1 (A:7-147) Chaperone protein Caf1m {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d3bwuc1 b.1.11.1 (C:1-121) Periplasmic chaperone FimC {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2j2za1 b.1.11.1 (A:1-124) Pilus chaperone PapD, N-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure