Citrus Sinensis ID: 020223

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPKD
cccccccccccHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccHHccccccccccEEEEcccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEccccccHHHHHHHHHccccccccEEEEEEccEEEccHHHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccEEEEEcHHHHHHHcccHHHHHHHHHccccccHHHHHHHHcccEEEEEEccccccccccccccc
ccccccccccHcHHHEccccHHHHHHHHHHHccccccHHHHHHcccccccccHHcHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccHEEEccccccccEEEEEccHHHHHHHHHHHHccHHHHHHccccccccccccccccccEEEEEccHHcHHHHHHHHHHccccccccEEEEEEEEEEEccHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHHHHHHcccccccHcccccHHHHHHHHHHcccccEEEccHHHHHHHcccHHHHHHHHHHccHHHHHHHHHHHccEEEEEEEccccccccccccccc
maypvadsqsnkaavqatnddasasklscvkkgymkddyihlfvrrpvrrspiinrGYFARWAALRRLLYQFLdcgsdgdkkchtkkqilslgagfdtTYFQLQaegkaphlyVELDFIEVTSKKAALIETHGELKDKVGVTASISqakgevlgdnykllpvdlrDIQMLNEVINlanmdpslptFIIAECVLiyldpdssraiVGWASKTFSTAVFFLYeqihpddafGQQMIRNLESRGCallginatpTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDamglfgdfgfpkd
maypvadsqsnkaavqatnddasasklscvkkgymkddyihlfvrrpvrrspiinRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHgelkdkvgvtasisqakgevlgdnyklLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYStfinpqerrrIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPKD
MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPKD
**************************LSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIET*********************LGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGF***
*****************TNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPK*
***********************ASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPKD
************AAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA****AKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGF***
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MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLFGDFGFPKD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query329 2.2.26 [Sep-21-2011]
Q8BYR1 686 Leucine carboxyl methyltr yes no 0.911 0.437 0.391 5e-58
Q5XIA3 686 Leucine carboxyl methyltr yes no 0.914 0.438 0.401 1e-56
Q6P4Z6332 Leucine carboxyl methyltr no no 0.863 0.855 0.368 2e-50
Q9UIC8334 Leucine carboxyl methyltr yes no 0.899 0.886 0.376 6e-50
Q3T0H0332 Leucine carboxyl methyltr yes no 0.905 0.897 0.380 1e-49
O60294 686 Leucine carboxyl methyltr no no 0.902 0.432 0.377 1e-49
Q4WS57398 Leucine carboxyl methyltr yes no 0.908 0.751 0.340 3e-43
P46554333 Probable leucine carboxyl yes no 0.911 0.900 0.342 4e-43
Q5AQJ2382 Leucine carboxyl methyltr yes no 0.942 0.811 0.343 3e-42
Q60YU0331 Probable leucine carboxyl N/A no 0.911 0.906 0.338 7e-42
>sp|Q8BYR1|LCMT2_MOUSE Leucine carboxyl methyltransferase 2 OS=Mus musculus GN=Lcmt2 PE=2 SV=4 Back     alignment and function desciption
 Score =  224 bits (572), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 119/304 (39%), Positives = 179/304 (58%), Gaps = 4/304 (1%)

Query: 9   QSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAALRRL 68
           Q     VQ+TND +S SK S    GY++D +  L V  PVRR+P+I+RGY+ R  A+R  
Sbjct: 7   QRRAGTVQSTNDSSSLSKRSLAAHGYVRDPFAALLVPGPVRRTPLIHRGYYVRARAVRHC 66

Query: 69  LYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYV-ELDFIEVTSKKAA 127
           +  FL+  S    +  T+ QILSLG+G D+ YF+L+A G      V E+DF +V+  KA 
Sbjct: 67  VRAFLELTSALPSR--TRAQILSLGSGSDSLYFRLKAAGLLARAAVWEVDFPDVSRLKAE 124

Query: 128 LIETHGELKDKVGVTASISQAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTF 186
            IE   EL+ + G       A        +Y++L  DLR++Q L E ++ A +D + PT 
Sbjct: 125 RIEETPELRAQTGPFKIGDSASSLCFESADYRILGADLRELQRLGEALDGAGLDATSPTL 184

Query: 187 IIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLG 246
           ++AE VL YL+P S+ A++ WA++ F  A+F +YEQ+ P DAFGQ M+++ +     L G
Sbjct: 185 LLAEAVLTYLEPSSATALIAWAAQRFPDALFVIYEQMQPGDAFGQIMLQHFQRLHSPLHG 244

Query: 247 INATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQE 306
           +   P + A+ + FL  GW    A D+   Y   ++ +ER+R+E LE FDE+EEWH+   
Sbjct: 245 LELFPVVKAQRQRFLQAGWTACSALDLNEFYRRLLSAEERQRVETLEPFDEYEEWHLKCS 304

Query: 307 HYCV 310
           HY +
Sbjct: 305 HYFI 308
Probable S-adenosyl-L-methionine-dependent methyltransferase that acts as a component of the wybutosine biosynthesis pathway. Wybutosine is a hyper modified guanosine with a tricyclic base found at the 3'-position adjacent to the anticodon of eukaryotic phenylalanine tRNA (By similarity). May methylate the carboxyl group of leucine residues to form alpha-leucine ester residues.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -
>sp|Q5XIA3|LCMT2_RAT Leucine carboxyl methyltransferase 2 OS=Rattus norvegicus GN=Lcmt2 PE=2 SV=1 Back     alignment and function description
>sp|Q6P4Z6|LCMT1_RAT Leucine carboxyl methyltransferase 1 OS=Rattus norvegicus GN=Lcmt1 PE=2 SV=1 Back     alignment and function description
>sp|Q9UIC8|LCMT1_HUMAN Leucine carboxyl methyltransferase 1 OS=Homo sapiens GN=LCMT1 PE=1 SV=2 Back     alignment and function description
>sp|Q3T0H0|LCMT1_BOVIN Leucine carboxyl methyltransferase 1 OS=Bos taurus GN=LCMT1 PE=2 SV=1 Back     alignment and function description
>sp|O60294|LCMT2_HUMAN Leucine carboxyl methyltransferase 2 OS=Homo sapiens GN=LCMT2 PE=1 SV=3 Back     alignment and function description
>sp|Q4WS57|LCMT1_ASPFU Leucine carboxyl methyltransferase 1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=ppm1 PE=3 SV=1 Back     alignment and function description
>sp|P46554|LCMT1_CAEEL Probable leucine carboxyl methyltransferase 1 OS=Caenorhabditis elegans GN=B0285.4 PE=3 SV=1 Back     alignment and function description
>sp|Q5AQJ2|LCMT1_EMENI Leucine carboxyl methyltransferase 1 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=ppm1 PE=3 SV=2 Back     alignment and function description
>sp|Q60YU0|LCMT1_CAEBR Probable leucine carboxyl methyltransferase 1 OS=Caenorhabditis briggsae GN=CBG18087 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
225453390341 PREDICTED: leucine carboxyl methyltransf 1.0 0.964 0.854 1e-166
255541044346 leucine carboxyl methyltransferase, puta 0.990 0.942 0.856 1e-166
297734612337 unnamed protein product [Vitis vinifera] 0.987 0.964 0.858 1e-166
147788699328 hypothetical protein VITISV_024939 [Viti 0.954 0.957 0.856 1e-159
449445505338 PREDICTED: leucine carboxyl methyltransf 0.993 0.967 0.802 1e-157
356567004332 PREDICTED: leucine carboxyl methyltransf 0.972 0.963 0.821 1e-154
297848290334 leucine carboxyl methyltransferase famil 0.972 0.958 0.784 1e-152
356548797334 PREDICTED: leucine carboxyl methyltransf 0.984 0.970 0.780 1e-149
22329288332 Leucine carboxyl methyltransferase [Arab 0.969 0.960 0.769 1e-149
224137162306 predicted protein [Populus trichocarpa] 0.914 0.983 0.830 1e-145
>gi|225453390|ref|XP_002271322.1| PREDICTED: leucine carboxyl methyltransferase 2-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  592 bits (1525), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 281/329 (85%), Positives = 302/329 (91%)

Query: 1   MAYPVADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFA 60
           MA  +ADS SN+AAVQATNDDASASKLSC+KKGYMKDDYIHLFVRRPVRRSPIINRGYFA
Sbjct: 1   MANTMADSHSNRAAVQATNDDASASKLSCIKKGYMKDDYIHLFVRRPVRRSPIINRGYFA 60

Query: 61  RWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIE 120
           RWAALR+LLYQFL C  D  ++ H KKQILSLGAGFDTTYFQLQ EGKAP++YVELDF E
Sbjct: 61  RWAALRKLLYQFLSCERDAKEQGHAKKQILSLGAGFDTTYFQLQDEGKAPYIYVELDFKE 120

Query: 121 VTSKKAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMD 180
           VTSKKAA+IET  +L+DKVG TASIS+ KGEVL D+YKLLPVDLRDIQ L++VI +ANMD
Sbjct: 121 VTSKKAAIIETCSQLRDKVGATASISREKGEVLSDHYKLLPVDLRDIQKLDDVIAMANMD 180

Query: 181 PSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESR 240
           PSLPTFIIAECVLIYLDPDSSR IV WASK FSTAVFFLYEQIHPDDAFGQQMIRNLESR
Sbjct: 181 PSLPTFIIAECVLIYLDPDSSRGIVAWASKKFSTAVFFLYEQIHPDDAFGQQMIRNLESR 240

Query: 241 GCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEE 300
           GCALLGI  TPTLLAKEKLFLDQGWQ+AVAWDMLR+YS F++ QERRRIERLELFDEFEE
Sbjct: 241 GCALLGIYETPTLLAKEKLFLDQGWQRAVAWDMLRIYSNFVDAQERRRIERLELFDEFEE 300

Query: 301 WHMMQEHYCVAHAINDAMGLFGDFGFPKD 329
           WHMMQEHYCVA+AINDAMGL GDFGFPKD
Sbjct: 301 WHMMQEHYCVAYAINDAMGLLGDFGFPKD 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255541044|ref|XP_002511586.1| leucine carboxyl methyltransferase, putative [Ricinus communis] gi|223548766|gb|EEF50255.1| leucine carboxyl methyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|297734612|emb|CBI16663.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147788699|emb|CAN69755.1| hypothetical protein VITISV_024939 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449445505|ref|XP_004140513.1| PREDICTED: leucine carboxyl methyltransferase 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356567004|ref|XP_003551714.1| PREDICTED: leucine carboxyl methyltransferase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|297848290|ref|XP_002892026.1| leucine carboxyl methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297337868|gb|EFH68285.1| leucine carboxyl methyltransferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356548797|ref|XP_003542786.1| PREDICTED: leucine carboxyl methyltransferase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|22329288|ref|NP_171712.2| Leucine carboxyl methyltransferase [Arabidopsis thaliana] gi|42571301|ref|NP_973741.1| Leucine carboxyl methyltransferase [Arabidopsis thaliana] gi|18377694|gb|AAL66997.1| unknown protein [Arabidopsis thaliana] gi|22136718|gb|AAM91678.1| unknown protein [Arabidopsis thaliana] gi|332189262|gb|AEE27383.1| Leucine carboxyl methyltransferase [Arabidopsis thaliana] gi|332189263|gb|AEE27384.1| Leucine carboxyl methyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224137162|ref|XP_002327049.1| predicted protein [Populus trichocarpa] gi|222835364|gb|EEE73799.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query329
TAIR|locus:2205619332 SBI1 "SUPPRESSOR OF BRI1" [Ara 0.969 0.960 0.769 2e-134
DICTYBASE|DDB_G0288271372 DDB_G0288271 "leucine carboxyl 0.911 0.806 0.371 6.1e-55
FB|FBgn0028507337 CG3793 [Drosophila melanogaste 0.887 0.866 0.405 9.9e-55
MGI|MGI:1353659 686 Lcmt2 "leucine carboxyl methyl 0.917 0.440 0.389 1.3e-54
UNIPROTKB|F1SI58 685 LCMT2 "Uncharacterized protein 0.914 0.439 0.397 1.5e-53
UNIPROTKB|O60294 686 LCMT2 "Leucine carboxyl methyl 0.914 0.438 0.384 1.9e-53
ZFIN|ZDB-GENE-110714-2 673 lcmt2 "leucine carboxyl methyl 0.911 0.445 0.385 2.4e-53
RGD|1305829 686 Lcmt2 "leucine carboxyl methyl 0.917 0.440 0.396 3e-53
ZFIN|ZDB-GENE-040912-75325 lcmt1 "leucine carboxyl methyl 0.945 0.956 0.386 1e-52
UNIPROTKB|G3N0F1 685 LCMT2 "Uncharacterized protein 0.890 0.427 0.381 3.5e-52
TAIR|locus:2205619 SBI1 "SUPPRESSOR OF BRI1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1317 (468.7 bits), Expect = 2.0e-134, P = 2.0e-134
 Identities = 250/325 (76%), Positives = 288/325 (88%)

Query:     5 VADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRPVRRSPIINRGYFARWAA 64
             +A+S+SN+AAVQATNDDASASKLSCVKKGYMKDDY+HLFV+RPVRRSPIINRGYF+RWAA
Sbjct:     1 MAESRSNRAAVQATNDDASASKLSCVKKGYMKDDYVHLFVKRPVRRSPIINRGYFSRWAA 60

Query:    65 LRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK 124
              R+L+ QFL  G+       +KKQILSLGAGFDTTYFQL  EG  P+LYVELDF EVTSK
Sbjct:    61 FRKLMSQFLLSGTS------SKKQILSLGAGFDTTYFQLLDEGNGPNLYVELDFKEVTSK 114

Query:   125 KAALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLP 184
             KAA+I+   +L+DK+G  ASIS  +G+VL D+YKLLPVDLRDI  L +VI+ A+MD SLP
Sbjct:   115 KAAVIQNSSQLRDKLGANASISIDEGQVLSDHYKLLPVDLRDIPKLRDVISFADMDLSLP 174

Query:   185 TFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCAL 244
             TFIIAECVLIYLDPDSSRAIV W+SKTFSTAVFFLYEQIHPDDAFG QMIRNLESRGCAL
Sbjct:   175 TFIIAECVLIYLDPDSSRAIVNWSSKTFSTAVFFLYEQIHPDDAFGHQMIRNLESRGCAL 234

Query:   245 LGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMM 304
             L I+A+PTLLAKE+LFLD GWQ+AVAWDML+VY +F++ QE+RRIERLELFDEFEEWHMM
Sbjct:   235 LSIDASPTLLAKERLFLDNGWQRAVAWDMLKVYGSFVDTQEKRRIERLELFDEFEEWHMM 294

Query:   305 QEHYCVAHAINDAMGLFGDFGFPKD 329
             QEHYCV +A+NDAMG+FGDFGF ++
Sbjct:   295 QEHYCVTYAVNDAMGIFGDFGFTRE 319
GO:0005634 "nucleus" evidence=ISM
GO:0008168 "methyltransferase activity" evidence=IEA;ISS
GO:0048573 "photoperiodism, flowering" evidence=RCA
DICTYBASE|DDB_G0288271 DDB_G0288271 "leucine carboxyl methyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
FB|FBgn0028507 CG3793 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
MGI|MGI:1353659 Lcmt2 "leucine carboxyl methyltransferase 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SI58 LCMT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|O60294 LCMT2 "Leucine carboxyl methyltransferase 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-110714-2 lcmt2 "leucine carboxyl methyltransferase 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|1305829 Lcmt2 "leucine carboxyl methyltransferase 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040912-75 lcmt1 "leucine carboxyl methyltransferase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|G3N0F1 LCMT2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9UIC8LCMT1_HUMAN2, ., 1, ., 1, ., 2, 3, 30.37660.89960.8862yesno
O94257LCMT1_SCHPO2, ., 1, ., 1, ., 2, 3, 30.32020.89050.9451yesno
P46554LCMT1_CAEEL2, ., 1, ., 1, ., 2, 3, 30.34270.91180.9009yesno
Q3T0H0LCMT1_BOVIN2, ., 1, ., 1, ., 2, 3, 30.38060.90570.8975yesno
Q6C997LCMT1_YARLI2, ., 1, ., 1, ., 2, 3, 30.34960.87530.8888yesno
Q4ICG8LCMT1_GIBZE2, ., 1, ., 1, ., 2, 3, 30.30700.96350.8453yesno
Q5AQJ2LCMT1_EMENI2, ., 1, ., 1, ., 2, 3, 30.34320.94220.8115yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.10.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
scaffold_100016.1
annotation not avaliable (334 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh2_kg.6__2849__AT4G08960.1
annotation not avaliable (391 aa)
    • • 0.431

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
pfam04072175 pfam04072, LCM, Leucine carboxyl methyltransferase 6e-20
COG3315297 COG3315, COG3315, O-Methyltransferase involved in 1e-08
TIGR00027260 TIGR00027, mthyl_TIGR00027, methyltransferase, TIG 4e-08
>gnl|CDD|217872 pfam04072, LCM, Leucine carboxyl methyltransferase Back     alignment and domain information 
 Score = 84.9 bits (211), Expect = 6e-20
 Identities = 47/202 (23%), Positives = 71/202 (35%), Gaps = 37/202 (18%)

Query: 14  AVQATNDDASASKLSCVKKGYMKDDYIHLFVRR--------PVRRSPIINRGYFARWAAL 65
           A+      A  S+        + D Y    VR             +P +N G  AR    
Sbjct: 1   ALITAAARALESRRP---DPLLDDPYAAELVRAIDYDFSKLRPGGAPQLNLGIAARTRFF 57

Query: 66  RRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKK 125
              L  FL             +Q++ LGAG DT  ++L         + E+D  EV   K
Sbjct: 58  DDFLRAFLAAHPGA-------RQVVILGAGLDTRAYRL-DWPAGGVRWFEVDLPEVIEFK 109

Query: 126 AALIETHGELKDKVGVTASISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPT 185
             L+   G                        + + VDLRD     + +  A  DPS PT
Sbjct: 110 RRLLPEAGAR-----------------PPARRRYVAVDLRD-DDWLDALRAAGFDPSRPT 151

Query: 186 FIIAECVLIYLDPDSSRAIVGW 207
             +AE +L+YL  ++  A++  
Sbjct: 152 LFVAEGLLMYLTEEAVDALLRR 173

Family of leucine carboxyl methyltransferases EC:2.1.1.-. This family may need divides a the full alignment contains a significantly shorter mouse sequence. Length = 175
>gnl|CDD|225852 COG3315, COG3315, O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|232789 TIGR00027, mthyl_TIGR00027, methyltransferase, TIGR00027 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 329
KOG2918335 consensus Carboxymethyl transferase [Posttranslati 100.0
TIGR00027260 mthyl_TIGR00027 methyltransferase, putative, TIGR0 100.0
COG3315297 O-Methyltransferase involved in polyketide biosynt 100.0
PF04072183 LCM: Leucine carboxyl methyltransferase; InterPro: 100.0
PF04672267 Methyltransf_19: S-adenosyl methyltransferase; Int 98.48
TIGR00740239 methyltransferase, putative. A simple BLAST search 97.93
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 97.7
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 97.62
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.32
PRK11036255 putative S-adenosyl-L-methionine-dependent methylt 96.96
PF12147311 Methyltransf_20: Putative methyltransferase; Inter 96.76
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 96.45
PRK15068322 tRNA mo(5)U34 methyltransferase; Provisional 96.44
PF00891241 Methyltransf_2: O-methyltransferase; InterPro: IPR 96.25
PLN02244340 tocopherol O-methyltransferase 96.19
PLN02490340 MPBQ/MSBQ methyltransferase 96.17
PLN02233261 ubiquinone biosynthesis methyltransferase 96.15
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 96.07
TIGR00452314 methyltransferase, putative. Known examples to dat 96.06
PLN02336475 phosphoethanolamine N-methyltransferase 95.88
TIGR02021219 BchM-ChlM magnesium protoporphyrin O-methyltransfe 95.61
PRK07580230 Mg-protoporphyrin IX methyl transferase; Validated 95.56
PLN03075296 nicotianamine synthase; Provisional 94.98
PLN02585315 magnesium protoporphyrin IX methyltransferase 94.71
TIGR03587204 Pse_Me-ase pseudaminic acid biosynthesis-associate 94.36
PF06080204 DUF938: Protein of unknown function (DUF938); Inte 94.27
smart00828224 PKS_MT Methyltransferase in polyketide synthase (P 94.26
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 94.16
PF03848192 TehB: Tellurite resistance protein TehB; InterPro: 93.69
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 93.19
PLN02396322 hexaprenyldihydroxybenzoate methyltransferase 92.89
TIGR03438301 probable methyltransferase. This model represents 92.87
PLN02336 475 phosphoethanolamine N-methyltransferase 92.43
PRK14103255 trans-aconitate 2-methyltransferase; Provisional 92.17
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 91.95
PRK00216239 ubiE ubiquinone/menaquinone biosynthesis methyltra 91.64
PRK06202232 hypothetical protein; Provisional 91.64
PRK11873272 arsM arsenite S-adenosylmethyltransferase; Reviewe 91.0
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 90.22
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 90.01
PRK11207197 tellurite resistance protein TehB; Provisional 89.96
PF03291331 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 89.37
PRK12335287 tellurite resistance protein TehB; Provisional 89.37
PLN02232160 ubiquinone biosynthesis methyltransferase 86.97
KOG2361264 consensus Predicted methyltransferase [General fun 86.33
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 84.13
PLN02366308 spermidine synthase 84.04
PF02353273 CMAS: Mycolic acid cyclopropane synthetase; InterP 83.07
KOG3178342 consensus Hydroxyindole-O-methyltransferase and re 83.04
PF08003315 Methyltransf_9: Protein of unknown function (DUF16 83.04
TIGR01983224 UbiG ubiquinone biosynthesis O-methyltransferase. 82.54
PF05401201 NodS: Nodulation protein S (NodS); InterPro: IPR00 82.19
PRK05134233 bifunctional 3-demethylubiquinone-9 3-methyltransf 81.48
TIGR03439319 methyl_EasF probable methyltransferase domain, Eas 81.2
PF0710997 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyl 81.08
PF0824195 Methyltransf_11: Methyltransferase domain; InterPr 80.58
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=2.1e-86  Score=609.89  Aligned_cols=311  Identities=39%  Similarity=0.690  Sum_probs=285.3

Q ss_pred             CCcCcchhHHhhhhHHHHhhHhhhhcCCCCchhHHhhhc-CCCcCCcccccchhHHHHHHHHHHHHHHhcCCCCCCCCCC
Q 020223            7 DSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHT   85 (329)
Q Consensus         7 ~~~~~d~~V~~T~~~a~~sk~sa~~~gy~~Dp~a~~f~~-~~~rr~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~   85 (329)
                      ...+.|.+||+||+||+.||+++++.||+.|||+.+|+. +..||+|.||||||+|+.+|+.+|.+||.+..+       
T Consensus        15 ~~~~~d~~vq~Tnddss~ck~~~~~~gy~~d~~~~~~~~~~~~rr~P~inRGy~~R~~aI~~~v~~Fl~~~~~-------   87 (335)
T KOG2918|consen   15 RGKSADSAVQGTNDDSSLCKRSATKSGYWHDPFIKLFVPSKKARRAPEINRGYWARTMAIRHAVRAFLEQTDG-------   87 (335)
T ss_pred             cccCcchhhhhccchhhhhhhHHHhcCCccCchhhhhccccccCCCceecchhhHHHHHHHHHHHHHHHhcCC-------
Confidence            345678899999999999999999999999999999998 677899999999999999999999999998654       


Q ss_pred             cceEEEeCCCCchhhhhhcccC-CCCCEEEEecchhHHHHHHHHHhccccch---hhhcccccccccCCcccCCCeEEEe
Q 020223           86 KKQILSLGAGFDTTYFQLQAEG-KAPHLYVELDFIEVTSKKAALIETHGELK---DKVGVTASISQAKGEVLGDNYKLLP  161 (329)
Q Consensus        86 ~~QVV~LGaGlDTr~~RL~~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~---~~~g~~~~~~~~~~~l~~~~y~~v~  161 (329)
                      ++||||||||+||++|||.+.+ ..++.|||||||+++++|..++.+.|.+.   ++.+++ +...+++.+++.+|+++|
T Consensus        88 ~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~ik~~~~~s~~l~~~~~eD-~~~~s~~~l~s~~Y~~~g  166 (335)
T KOG2918|consen   88 KKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISIKRKPELSSILLGLHDED-VVDLSGTDLHSGRYHLIG  166 (335)
T ss_pred             ceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhhcccCchhhhhhcccccc-ccccCcceeccCceeeec
Confidence            8999999999999999998875 57899999999999999996655555422   222333 456677899999999999


Q ss_pred             ccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcC
Q 020223          162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRG  241 (329)
Q Consensus       162 ~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g  241 (329)
                      ||||+.+.++++|..+++|.+.|||||+||||+||+|+++..||+|+++.|+++.||+|||++|+|+||++|.+||++||
T Consensus       167 ~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~~D~Fg~vM~~nlk~r~  246 (335)
T KOG2918|consen  167 CDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINPNDRFGKVMLANLKRRG  246 (335)
T ss_pred             cchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCCCChHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhCCCHHHHHHhhhccCCChHHHHHHHhcCcEEEEEecCCcccc
Q 020223          242 CALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGLF  321 (329)
Q Consensus       242 ~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l~~~er~ri~~lE~fDE~Ee~~l~~~HY~i~~A~~~~~~~~  321 (329)
                      +||+|++.|+|+|+|++||.++||+.|.+.||+++|+.++|.+||+||++||+|||+|||+++|+|||+++|++. ....
T Consensus       247 ~~L~gle~y~s~Esq~~Rf~~~Gw~~v~a~Dm~ei~n~~lp~~Ek~rie~lE~lDE~Eel~~l~~HYcL~~A~~~-~~~~  325 (335)
T KOG2918|consen  247 CPLHGLETYNSIESQRSRFLKAGWEYVIAVDMNEIYNFSLPEAEKKRIESLEPLDELEELHLLCQHYCLCHATKG-VFKG  325 (335)
T ss_pred             CCCchhhhcccHHHHHHHHHhcCCceeehhhHHHHHHhhCCHHHHHHHhhcccchhHHHHHHHHHHheeeeeecc-cccC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998 3333


Q ss_pred             cccCC
Q 020223          322 GDFGF  326 (329)
Q Consensus       322 ~~~~~  326 (329)
                      ..+++
T Consensus       326 ~~l~l  330 (335)
T KOG2918|consen  326 IELGL  330 (335)
T ss_pred             ceecc
Confidence            33444

>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family Back     alignment and domain information
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues Back     alignment and domain information
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>PLN02244 tocopherol O-methyltransferase Back     alignment and domain information
>PLN02490 MPBQ/MSBQ methyltransferase Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>TIGR00452 methyltransferase, putative Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase Back     alignment and domain information
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated Back     alignment and domain information
>PLN03075 nicotianamine synthase; Provisional Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase Back     alignment and domain information
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes Back     alignment and domain information
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PRK14103 trans-aconitate 2-methyltransferase; Provisional Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PRK11207 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes Back     alignment and domain information
>PRK12335 tellurite resistance protein TehB; Provisional Back     alignment and domain information
>PLN02232 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>KOG2361 consensus Predicted methyltransferase [General function prediction only] Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>PLN02366 spermidine synthase Back     alignment and domain information
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) Back     alignment and domain information
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] Back     alignment and domain information
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase Back     alignment and domain information
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins Back     alignment and domain information
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional Back     alignment and domain information
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family Back     alignment and domain information
>PF07109 Mg-por_mtran_C: Magnesium-protoporphyrin IX methyltransferase C-terminus; InterPro: IPR010940 This entry represents the C terminus (approximately 100 residues) of bacterial and eukaryotic Magnesium-protoporphyrin IX methyltransferase (2 Back     alignment and domain information
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3iei_A334 Crystal Structure Of Human Leucine Carboxylmethyltr 1e-50
3o7w_A294 The Crystal Structure Of Human Leucine Carboxyl Met 3e-41
2zw9_A 695 Crystal Structure Of Trna Wybutosine Synthesizing E 7e-25
1rjd_A334 Structure Of Ppm1, A Leucine Carboxy Methyltransfer 1e-20
2ob1_A319 Ppm1 With 1,8-Ans Length = 319 1e-20
2ob2_A327 Ppm1 In The Absence Of 1,8-Ans (Cf 1jd) Length = 32 3e-19
>pdb|3IEI|A Chain A, Crystal Structure Of Human Leucine Carboxylmethyltransferase-1 In Complex With S-Adenosyl Homocysteine Length = 334 Back     alignment and structure 
Iteration: 1

 Score =  196 bits (499), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/307 (37%), Positives = 165/307 (53%), Gaps = 12/307 (3%)
Query: 11  NKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVR-RPVRRSPIINRGYFARWAALRRLL 69
           N   V+ T +DAS  K   V  GY  D YI  FVR    R++P INRGYFAR   + +L+
Sbjct: 22  NDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLI 81
Query: 70  YQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALI 129
             FL        +CH   QI++LGAG DTT+++L+ E      Y E+DF  + ++K   I
Sbjct: 82  KAFLR-----KTECHC--QIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSI 134
Query: 130 ETHGELKDKVGVTAS--ISQAKGEVL-GDNYKLLPVDLRDIQMLNEVINLANMDPSLPTF 186
           +    L   +    S    Q  G +L    Y ++  DLRD+  L E +   NM+  LPT 
Sbjct: 135 KCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNTQLPTL 194
Query: 187 IIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALLG 246
           +IAECVL+Y+ P+ S  ++ WA+ +F  A+F  YEQ++  D FGQ MI NL  R C L G
Sbjct: 195 LIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLAG 254
Query: 247 INATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQE 306
           +    +L ++++  L  GW+ A A DM+ +Y+      E  RIE LE  DE E    +  
Sbjct: 255 VETCKSLESQKERLLSNGWETASAVDMMELYNRLPRA-EVSRIESLEFLDEMELLEQLMR 313
Query: 307 HYCVAHA 313
           HYC+  A
Sbjct: 314 HYCLCWA 320
>pdb|3O7W|A Chain A, The Crystal Structure Of Human Leucine Carboxyl Methyltransferase 1 Length = 294 Back     alignment and structure
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme Tyw4 Length = 695 Back     alignment and structure
>pdb|1RJD|A Chain A, Structure Of Ppm1, A Leucine Carboxy Methyltransferase Involved In The Regulation Of Protein Phosphatase 2a Activity Length = 334 Back     alignment and structure
>pdb|2OB1|A Chain A, Ppm1 With 1,8-Ans Length = 319 Back     alignment and structure
>pdb|2OB2|A Chain A, Ppm1 In The Absence Of 1,8-Ans (Cf 1jd) Length = 327 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query329
3iei_A334 Leucine carboxyl methyltransferase 1; LCMT-1, S-ad 1e-108
2zwa_A 695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 1e-99
1rjd_A334 PPM1P, carboxy methyl transferase for protein phos 3e-85
2uyo_A310 Hypothetical protein ML2640; putative methyltransf 5e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* Length = 334 Back     alignment and structure
 Score =  318 bits (815), Expect = e-108
 Identities = 113/320 (35%), Positives = 165/320 (51%), Gaps = 12/320 (3%)

Query: 6   ADSQSNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRR-PVRRSPIINRGYFARWAA 64
           +    N   V+ T +DAS  K   V  GY  D YI  FVR    R++P INRGYFAR   
Sbjct: 17  SSMDENDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHG 76

Query: 65  LRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSK 124
           + +L+  FL       +K     QI++LGAG DTT+++L+ E      Y E+DF  + ++
Sbjct: 77  VSQLIKAFL-------RKTECHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTR 129

Query: 125 KAALIETHGELKDKVGVTAS---ISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDP 181
           K   I+    L   +    S   +      +    Y ++  DLRD+  L E +   NM+ 
Sbjct: 130 KLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLRDLSELEEKLKKCNMNT 189

Query: 182 SLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRG 241
            LPT +IAECVL+Y+ P+ S  ++ WA+ +F  A+F  YEQ++  D FGQ MI NL  R 
Sbjct: 190 QLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQ 249

Query: 242 CALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEW 301
           C L G+    +L ++++  L  GW+ A A DM+ +Y+  +   E  RIE LE  DE E  
Sbjct: 250 CDLAGVETCKSLESQKERLLSNGWETASAVDMMELYN-RLPRAEVSRIESLEFLDEMELL 308

Query: 302 HMMQEHYCVAHAINDAMGLF 321
             +  HYC+  A      L 
Sbjct: 309 EQLMRHYCLCWATKGGNELG 328
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 Back     alignment and structure
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A Length = 334 Back     alignment and structure
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* Length = 310 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
3iei_A334 Leucine carboxyl methyltransferase 1; LCMT-1, S-ad 100.0
1rjd_A334 PPM1P, carboxy methyl transferase for protein phos 100.0
2zwa_A 695 Leucine carboxyl methyltransferase 2; HET: SAH CIT 100.0
2uyo_A310 Hypothetical protein ML2640; putative methyltransf 100.0
3giw_A277 Protein of unknown function DUF574; rossmann-fold 99.09
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 98.84
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 98.35
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 97.9
3dtn_A234 Putative methyltransferase MM_2633; structural gen 97.8
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 97.6
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 97.6
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 97.57
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 97.56
3dp7_A363 SAM-dependent methyltransferase; structural genomi 97.54
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 97.46
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 97.45
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 97.43
2r3s_A335 Uncharacterized protein; methyltransferase domain, 97.41
4htf_A285 S-adenosylmethionine-dependent methyltransferase; 97.29
3hnr_A220 Probable methyltransferase BT9727_4108; structural 97.28
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 97.27
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 97.24
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 97.15
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 97.11
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 97.11
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 97.06
1ri5_A298 MRNA capping enzyme; methyltransferase, M7G, messe 96.98
3ou2_A218 SAM-dependent methyltransferase; O-methyltransfera 96.97
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 96.81
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 96.79
3ocj_A305 Putative exported protein; structural genomics, PS 96.72
1vl5_A260 Unknown conserved protein BH2331; putative methylt 96.62
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 96.61
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 96.6
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 96.58
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 96.56
3lcc_A235 Putative methyl chloride transferase; halide methy 96.55
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 96.51
3ggd_A245 SAM-dependent methyltransferase; YP_325210.1, stru 96.49
1xxl_A239 YCGJ protein; structural genomics, protein structu 96.44
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 96.39
3f4k_A257 Putative methyltransferase; structural genomics, P 96.14
2vdw_A302 Vaccinia virus capping enzyme D1 subunit; nucleoti 96.03
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 96.02
3dh0_A219 SAM dependent methyltransferase; cystal structure, 95.94
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 95.94
3gu3_A284 Methyltransferase; alpha-beta protein, structural 95.87
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 95.85
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 95.83
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 95.83
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 95.81
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 95.79
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 95.76
3g2m_A299 PCZA361.24; SAM-dependent methyltransferase, glyco 95.69
2yqz_A263 Hypothetical protein TTHA0223; RNA methyltransfera 95.56
3bgv_A313 MRNA CAP guanine-N7 methyltransferase; alternative 95.55
1fp2_A352 Isoflavone O-methyltransferase; protein-product co 95.3
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 95.27
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 95.19
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 95.1
1vlm_A219 SAM-dependent methyltransferase; possible histamin 95.08
2xvm_A199 Tellurite resistance protein TEHB; antibiotic resi 94.99
2kw5_A202 SLR1183 protein; structural genomics, northeast st 94.85
2p8j_A209 S-adenosylmethionine-dependent methyltransferase; 94.59
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 94.57
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 94.41
1zg3_A358 Isoflavanone 4'-O-methyltransferase; rossman fold, 94.39
2p7i_A250 Hypothetical protein; putative methyltransferase, 94.18
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 93.41
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 93.29
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 93.26
3g07_A292 7SK snRNA methylphosphate capping enzyme; structur 93.24
3ofk_A216 Nodulation protein S; NODS, N-methyltransferase, S 92.91
1ve3_A227 Hypothetical protein PH0226; dimer, riken structur 92.27
3bkw_A243 MLL3908 protein, S-adenosylmethionine dependent me 91.9
2p35_A259 Trans-aconitate 2-methyltransferase; SAM dependent 91.74
3m70_A286 Tellurite resistance protein TEHB homolog; structu 91.42
3g5t_A299 Trans-aconitate 3-methyltransferase; structural ge 91.32
2y1w_A348 Histone-arginine methyltransferase CARM1; histone 90.93
1wzn_A252 SAM-dependent methyltransferase; structural genomi 90.89
1pjz_A203 Thiopurine S-methyltransferase; polymorphism, S-ad 90.89
2pxx_A215 Uncharacterized protein MGC2408; structural genomi 90.64
2i62_A265 Nicotinamide N-methyltransferase; structural genom 90.19
3pfg_A263 N-methyltransferase; N,N-dimethyltransferase, SAM 89.92
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 89.58
2fyt_A340 Protein arginine N-methyltransferase 3; structural 89.28
3q7e_A349 Protein arginine N-methyltransferase 1; HET: SAH; 89.12
1g6q_1328 HnRNP arginine N-methyltransferase; SAM-binding do 89.04
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 88.33
4hc4_A376 Protein arginine N-methyltransferase 6; HRMT1L6, S 88.32
3o4f_A294 Spermidine synthase; aminopropyltransferase, polya 87.98
3i9f_A170 Putative type 11 methyltransferase; structural gen 86.9
3d2l_A243 SAM-dependent methyltransferase; ZP_00538691.1, st 86.72
3r0q_C376 Probable protein arginine N-methyltransferase 4.2; 84.79
2gs9_A211 Hypothetical protein TT1324; methyl transferase, s 84.77
3ege_A261 Putative methyltransferase from antibiotic biosyn 84.57
3uwp_A438 Histone-lysine N-methyltransferase, H3 lysine-79; 82.93
3bxo_A239 N,N-dimethyltransferase; desosamine, sugar, carboh 82.84
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 82.14
3thr_A293 Glycine N-methyltransferase; GNMT, folate, methylt 82.08
2gb4_A252 Thiopurine S-methyltransferase; 18204406, thiopuri 81.55
3cc8_A230 Putative methyltransferase; structural genomics, j 81.5
>3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* Back     alignment and structure
Probab=100.00  E-value=4.3e-87  Score=638.66  Aligned_cols=307  Identities=36%  Similarity=0.626  Sum_probs=280.5

Q ss_pred             CcchhHHhhhhHHHHhhHhhhhcCCCCchhHHhhhcCC-CcCCcccccchhHHHHHHHHHHHHHHhcCCCCCCCCCCcce
Q 020223           10 SNKAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRRP-VRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQ   88 (329)
Q Consensus        10 ~~d~~V~~T~~~a~~sk~sa~~~gy~~Dp~a~~f~~~~-~rr~P~inrG~~~R~~~id~~v~~fl~~~~~~~~~~~~~~Q   88 (329)
                      ++|.+||+||+||++||+|||++|||+|||+++||++. .||+|+||||||+|+++||.+|.+||+++++       .+|
T Consensus        21 ~~d~~V~~T~~da~~sk~sav~~gY~~Dpf~~~Fv~~~~~rr~P~inrG~~~Rt~~iD~~v~~fl~~~~~-------~~Q   93 (334)
T 3iei_A           21 ENDEGVRGTCEDASLCKRFAVSIGYWHDPYIQHFVRLSKERKAPEINRGYFARVHGVSQLIKAFLRKTEC-------HCQ   93 (334)
T ss_dssp             ----CTTHHHHHHHHHHHHHHHHTSSCCSSGGGTSCCCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHTTT-------CSE
T ss_pred             CchhhhhcccHHHHHHHHHHHHcCCCCCHHHHHHcCcccCCCCchHHHHHHHHHHHHHHHHHHHHHhCCC-------CCE
Confidence            47889999999999999999999999999999999876 7999999999999999999999999998754       689


Q ss_pred             EEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcccc---cccccCCcccCCCeEEEeccCC
Q 020223           89 ILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGVTA---SISQAKGEVLGDNYKLLPVDLR  165 (329)
Q Consensus        89 VV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~~~---~~~~~~~~l~~~~y~~v~~DL~  165 (329)
                      |||||||||||+|||.+.+.++++|||||+|+|+++|+++|.++++|.+.+|...   ....++..+++++|++|++||+
T Consensus        94 VV~LGaGlDTr~~RL~~~~~~~~~~~EVD~P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v~~DL~  173 (334)
T 3iei_A           94 IVNLGAGMDTTFWRLKDEDLLSSKYFEVDFPMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVIGADLR  173 (334)
T ss_dssp             EEEETCTTCCHHHHHHHTTCCCSEEEEEECHHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEEECCTT
T ss_pred             EEEeCCCcCchHHHhcCCCCCCCeEEECCcHHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEEccccc
Confidence            9999999999999998753357999999999999999999999999888776421   1223344567999999999999


Q ss_pred             CchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEEeecCCCCHHHHHHHHHHHHcCCCcc
Q 020223          166 DIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYEQIHPDDAFGQQMIRNLESRGCALL  245 (329)
Q Consensus       166 ~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~e~i~p~d~fg~~m~~~l~~~g~~l~  245 (329)
                      +.+|+.+.|.++|+|++.|||||+|||||||+++++.+||+++++.|+++++++||+++|+|+||++|.+|++++|+||+
T Consensus       174 d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL~~~~~~~ll~~ia~~f~~~~~i~yE~i~p~d~fg~~M~~~l~~~g~pl~  253 (334)
T 3iei_A          174 DLSELEEKLKKCNMNTQLPTLLIAECVLVYMTPEQSANLLKWAANSFERAMFINYEQVNMGDRFGQIMIENLRRRQCDLA  253 (334)
T ss_dssp             CHHHHHHHHHHTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEEEECCTTSHHHHHHHHHHHTTTCCCT
T ss_pred             cchhHHHHHHhcCCCCCCCEEEEEchhhhCCCHHHHHHHHHHHHHhCCCceEEEEeccCCCCHHHHHHHHHHHHhCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhCCCHHHHHHhhhccCCChHHHHHHHhcCcEEEEEecCCccc-cccc
Q 020223          246 GINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFDEFEEWHMMQEHYCVAHAINDAMGL-FGDF  324 (329)
Q Consensus       246 ~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l~~~er~ri~~lE~fDE~Ee~~l~~~HY~i~~A~~~~~~~-~~~~  324 (329)
                      |+..|+++++|.+||.++||+.+.+.||+++|+. +|.+||+||++||+|||||||+|+|+||||+||+++...+ +.++
T Consensus       254 sl~~y~t~~~~~~r~~~~Gw~~~~~~d~~~~~~~-l~~~e~~ri~~lE~fDE~EE~~l~~~HY~i~~a~~~~~~~~~~~~  332 (334)
T 3iei_A          254 GVETCKSLESQKERLLSNGWETASAVDMMELYNR-LPRAEVSRIESLEFLDEMELLEQLMRHYCLCWATKGGNELGLKEI  332 (334)
T ss_dssp             TGGGGGCHHHHHHHHHTTTCSEEEEEEHHHHHHT-SCHHHHHHHHHHSCCCCHHHHHHHHTTEEEEEEEESCTTTTGGGC
T ss_pred             ccccCCCHHHHHHHHHHcCCCcceeecHHHHHHh-CCHHHHHHHHhccccccHHHHHHHhCceEEEEEECCCCCCchhhc
Confidence            9999999999999999999999999999999975 8999999999999999999999999999999999986544 4444
>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A Back     alignment and structure
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Back     alignment and structure
>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* Back     alignment and structure
>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Back     alignment and structure
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Back     alignment and structure
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Back     alignment and structure
>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Back     alignment and structure
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Back     alignment and structure
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Back     alignment and structure
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Back     alignment and structure
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* Back     alignment and structure
>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Back     alignment and structure
>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Back     alignment and structure
>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Back     alignment and structure
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Back     alignment and structure
>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A Back     alignment and structure
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Back     alignment and structure
>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Back     alignment and structure
>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Back     alignment and structure
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Back     alignment and structure
>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* Back     alignment and structure
>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* Back     alignment and structure
>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} Back     alignment and structure
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} Back     alignment and structure
>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Back     alignment and structure
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} Back     alignment and structure
>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Back     alignment and structure
>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* Back     alignment and structure
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Back     alignment and structure
>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Back     alignment and structure
>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 329
d1rjda_328 c.66.1.37 (A:) Leucine carboxy methyltransferase P 5e-97
d2uyoa1297 c.66.1.57 (A:14-310) Putative methyltransferase ML 2e-17
>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  288 bits (737), Expect = 5e-97
 Identities = 73/336 (21%), Positives = 131/336 (38%), Gaps = 47/336 (13%)

Query: 13  AAVQATNDDASASKLSCVKKGYMKDDYIHLFVRR-------------------------- 46
             +Q T+ DA + KL+ +  GY+    +                                
Sbjct: 2   RIIQQTDYDALSCKLAAISVGYLPSSGLQRLSVDLSKKYTEWHRSYLITLKKFSRRAFGK 61

Query: 47  ----PVRRSPIINRGYFARWAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQ 102
                    P++N G + R   +   + +FL          + K Q+++LG G D     
Sbjct: 62  VDKAMRSSFPVMNYGTYLRTVGIDAAILEFL--------VANEKVQVVNLGCGSDLRMLP 113

Query: 103 LQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVG-VTASISQAKGEVLGDNYKLLP 161
           L         YV++D+ E    K +++     L+  +G      +++   +    YKL  
Sbjct: 114 LLQMF-PHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAA 172

Query: 162 VDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLYE 221
            DL DI     +++       +PT +I+EC+L Y+  + S+ ++      FS  ++  Y+
Sbjct: 173 CDLNDITETTRLLD-VCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISYD 231

Query: 222 QI---HPDDAFGQQMIRNL-ESRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVY 277
            I    P+D FG  M  NL ESR   +  +    +       +        +  DM  ++
Sbjct: 232 PIGGSQPNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRW--SAAPNVIVNDMWEIF 289

Query: 278 STFINPQERRRIERLELFDEFEEWHMMQEHYCVAHA 313
           +  I   ER+R+  L+  DE EE  +MQ HY +  A
Sbjct: 290 NAQIPESERKRLRSLQFLDELEELKVMQTHYILMKA 325
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} Length = 297 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query329
d1rjda_328 Leucine carboxy methyltransferase Ppm1 {Baker's ye 100.0
d2uyoa1297 Putative methyltransferase ML2640 {Mycobacterium l 100.0
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 98.26
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 98.16
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 98.02
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 97.42
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 97.12
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 97.08
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 97.08
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 96.4
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 96.17
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 96.06
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 95.55
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 95.41
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 94.76
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 93.97
d1oria_316 Protein arginine N-methyltransferase 1, PRMT1 {Rat 93.58
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 93.15
d2fyta1311 Protein arginine N-methyltransferase 3, PRMT3 {Hum 93.13
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 92.67
d1kpga_285 CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} 92.55
d1g8sa_230 Fibrillarin homologue {Archaeon Methanococcus jann 91.11
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 90.56
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 89.57
d1g6q1_328 Arginine methyltransferase, HMT1 {Baker's yeast (S 89.45
d2bzga1229 Thiopurine S-methyltransferase {Human (Homo sapien 88.46
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 87.82
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 87.56
d1kpia_291 CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} 87.46
d2p7ia1225 Hypothetical protein ECA1738 {Erwinia carotovora [ 87.41
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 85.79
d1iy9a_274 Spermidine synthase {Bacillus subtilis [TaxId: 142 85.41
d1inla_295 Spermidine synthase {Thermotoga maritima [TaxId: 2 83.23
d2o07a1285 Spermidine synthase {Human (Homo sapiens) [TaxId: 81.09
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 80.57
d1pjza_201 Thiopurine S-methyltransferase {Pseudomonas syring 80.51
>d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Leucine carboxy methyltransferase Ppm1
domain: Leucine carboxy methyltransferase Ppm1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.2e-84  Score=614.90  Aligned_cols=292  Identities=25%  Similarity=0.410  Sum_probs=267.0

Q ss_pred             chhHHhhhhHHHHhhHhhhhcCCCCchhHHhhhcC------------------------------CCcCCcccccchhHH
Q 020223           12 KAAVQATNDDASASKLSCVKKGYMKDDYIHLFVRR------------------------------PVRRSPIINRGYFAR   61 (329)
Q Consensus        12 d~~V~~T~~~a~~sk~sa~~~gy~~Dp~a~~f~~~------------------------------~~rr~P~inrG~~~R   61 (329)
                      |.+||+||+||++||+||+++||++|||+..|+.+                              ..|++|+||||||+|
T Consensus         1 D~~Vq~T~~da~~sK~SAv~~GY~~d~~~~~f~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~PlINrGy~~R   80 (328)
T d1rjda_           1 ERIIQQTDYDALSCKLAAISVGYLPSSGLQRLSVDLSKKYTEWHRSYLITLKKFSRRAFGKVDKAMRSSFPVMNYGTYLR   80 (328)
T ss_dssp             CHHHHTHHHHHHHHHHHHHHHTSCCCTTTTTCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             CchhhcccHHHHHHHHHHHHcCCCCchhHHHhhhhccccccccccccccccccccccccccccccccccCCchhhhHHHH
Confidence            67999999999999999999999999999999731                              236789999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCCCcceEEEeCCCCchhhhhhcccCCCCCEEEEecchhHHHHHHHHHhccccchhhhcc
Q 020223           62 WAALRRLLYQFLDCGSDGDKKCHTKKQILSLGAGFDTTYFQLQAEGKAPHLYVELDFIEVTSKKAALIETHGELKDKVGV  141 (329)
Q Consensus        62 ~~~id~~v~~fl~~~~~~~~~~~~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~~g~  141 (329)
                      +.+||.+|.+||..++        ++||||||||||||+|||... .++++|||||||++++.|+++|.++++|+..+|.
T Consensus        81 t~~id~~v~~Fl~~~~--------~~QVV~LGaG~DTr~~Rl~~~-~~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~  151 (328)
T d1rjda_          81 TVGIDAAILEFLVANE--------KVQVVNLGCGSDLRMLPLLQM-FPHLAYVDIDYNESVELKNSILRESEILRISLGL  151 (328)
T ss_dssp             HHHHHHHHHHHHHHCS--------SEEEEEETCTTCCTHHHHHHH-CTTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHCC--------CcEEEEeCCccchHHHHhhcc-CCCcEEEECCcHHHHHHHHHHHHhchhhhhhccc
Confidence            9999999999998875        589999999999999999764 3789999999999999999999999999988875


Q ss_pred             ccc-ccccCCcccCCCeEEEeccCCCchhHHHHHHhCCCCCCCCEEEEeeccccccChHHHHHHHHHHHhcCCCcEEEEE
Q 020223          142 TAS-ISQAKGEVLGDNYKLLPVDLRDIQMLNEVINLANMDPSLPTFIIAECVLIYLDPDSSRAIVGWASKTFSTAVFFLY  220 (329)
Q Consensus       142 ~~~-~~~~~~~l~~~~y~~v~~DL~~~~~l~~~L~~~g~d~~~PTl~i~Egvl~YL~~~~~~~ll~~la~~f~~~~~i~~  220 (329)
                      ... ...+...+++++|++++|||++.+++.+.+ ..|+|++.|||||+||||+||+++++++||+|+++.|+++.+++|
T Consensus       152 ~~~~~~~~~~~~~s~~y~lv~~DL~d~~~~~~l~-~~~~d~~~PTl~iaE~vl~Yl~~~~~~~li~~~~~~f~~~~~i~Y  230 (328)
T d1rjda_         152 SKEDTAKSPFLIDQGRYKLAACDLNDITETTRLL-DVCTKREIPTIVISECLLCYMHNNESQLLINTIMSKFSHGLWISY  230 (328)
T ss_dssp             CSSCCCCTTEEEECSSEEEEECCTTCHHHHHHHH-HTTCCTTSCEEEEEESCGGGSCHHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             cccccccccccCCCCCeEEEecCCCCcHhhHHHH-HccCCCCCCeEEEEeeehhcCCHHHHHHHHHHHHHhCCCceEEEe
Confidence            432 222334567999999999999988887654 569999999999999999999999999999999999999999999


Q ss_pred             eecC---CCCHHHHHHHHHHH-HcCCCcccccCCCCHHHHHHHHHhCCCceeeecCHHHHHHhCCCHHHHHHhhhccCCC
Q 020223          221 EQIH---PDDAFGQQMIRNLE-SRGCALLGINATPTLLAKEKLFLDQGWQQAVAWDMLRVYSTFINPQERRRIERLELFD  296 (329)
Q Consensus       221 e~i~---p~d~fg~~m~~~l~-~~g~~l~~~~~~~t~~~~~~rf~~~Gw~~~~~~d~~~~~~~~l~~~er~ri~~lE~fD  296 (329)
                      ||++   |+|+||++|++||+ .+|++|+|+..|+|+++|.+||.  ||..+.+.||+++|+.++|.+||+||++||+||
T Consensus       231 E~i~~~~p~D~FG~~M~~nl~~~r~~~l~~~~~~~t~~~~~~r~~--~~~~~~~~dm~~~~~~~i~~~er~ri~~LE~fD  308 (328)
T d1rjda_         231 DPIGGSQPNDRFGAIMQSNLKESRNLEMPTLMTYNSKEKYASRWS--AAPNVIVNDMWEIFNAQIPESERKRLRSLQFLD  308 (328)
T ss_dssp             EECCCCSTTCCHHHHHHHHHHHHHCCCCTTTTTTCSHHHHHGGGT--TSSEEEEEEHHHHHHHTSCHHHHHHHHTTSCCC
T ss_pred             ccCCCCCCCChHHHHHHHHHHHhcCCCCCccccCCCHHHHHHHHh--cCCccchhhHHHHHHhhCCHHHHHHHhcCccCc
Confidence            9994   78999999999996 58999999999999999999994  999999999999999999999999999999999


Q ss_pred             hHHHHHHHhcCcEEEEEec
Q 020223          297 EFEEWHMMQEHYCVAHAIN  315 (329)
Q Consensus       297 E~Ee~~l~~~HY~i~~A~~  315 (329)
                      |||||+|+|+||||++|..
T Consensus       309 E~EE~~l~~~HY~i~~A~~  327 (328)
T d1rjda_         309 ELEELKVMQTHYILMKAQW  327 (328)
T ss_dssp             CHHHHHHHHTTEEEEEEEE
T ss_pred             cHHHHHHHhCCeEEEEEec
Confidence            9999999999999999974
>d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Back     information, alignment and structure