Citrus Sinensis ID: 020229
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | 2.2.26 [Sep-21-2011] | |||||||
| P93263 | 765 | 5-methyltetrahydropteroyl | N/A | no | 0.668 | 0.287 | 0.884 | 1e-118 | |
| Q42699 | 765 | 5-methyltetrahydropteroyl | N/A | no | 0.668 | 0.287 | 0.858 | 1e-115 | |
| O50008 | 765 | 5-methyltetrahydropteroyl | no | no | 0.668 | 0.287 | 0.853 | 1e-114 | |
| Q42662 | 764 | 5-methyltetrahydropteroyl | N/A | no | 0.683 | 0.294 | 0.858 | 1e-112 | |
| Q93J59 | 772 | 5-methyltetrahydropteroyl | yes | no | 0.601 | 0.256 | 0.515 | 8e-68 | |
| B1VV57 | 774 | 5-methyltetrahydropteroyl | yes | no | 0.805 | 0.342 | 0.447 | 4e-67 | |
| Q82LG4 | 772 | 5-methyltetrahydropteroyl | yes | no | 0.750 | 0.319 | 0.475 | 4e-66 | |
| Q98A73 | 776 | 5-methyltetrahydropteroyl | yes | no | 0.826 | 0.350 | 0.429 | 5e-64 | |
| Q2S338 | 769 | 5-methyltetrahydropteroyl | yes | no | 0.857 | 0.366 | 0.42 | 6e-61 | |
| B3QGC4 | 788 | 5-methyltetrahydropteroyl | yes | no | 0.677 | 0.282 | 0.495 | 7e-61 |
| >sp|P93263|METE_MESCR 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mesembryanthemum crystallinum GN=METE PE=2 SV=1 | Back alignment and function desciption |
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Score = 424 bits (1090), Expect = e-118, Method: Compositional matrix adjust.
Identities = 200/226 (88%), Positives = 213/226 (94%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
MASHIVGYPRMGPKRELKFALESFWDGKS+AEDL+KVSADLRSSIWKQM++AGIKYIPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLKKVSADLRSSIWKQMADAGIKYIPSN 60
Query: 61 TFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFI 120
TFSYYDQVLDTTAMLGAVPPRY W GGEI FDVYFSMARGNASVPAMEMTKWFDTNYHFI
Sbjct: 61 TFSYYDQVLDTTAMLGAVPPRYGWTGGEIEFDVYFSMARGNASVPAMEMTKWFDTNYHFI 120
Query: 121 VPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYLLLSKPAKGVAKTFSLLSL 180
VPELGP+V FSYASHKAV EYKEAK LGV+TVPVL+GPVSYLLLSK AKGV K+F LLSL
Sbjct: 121 VPELGPEVNFSYASHKAVLEYKEAKALGVDTVPVLVGPVSYLLLSKQAKGVDKSFDLLSL 180
Query: 181 LPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSF 226
LPKILPIYKEV++ELK AGASWIQFDEPLLVMDL+SHKL AF ++
Sbjct: 181 LPKILPIYKEVVAELKEAGASWIQFDEPLLVMDLESHKLQAFSAAY 226
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Catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine resulting in methionine formation. Mesembryanthemum crystallinum (taxid: 3544) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 4 |
| >sp|Q42699|METE_CATRO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Catharanthus roseus GN=METE PE=2 SV=1 | Back alignment and function description |
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| >sp|O50008|METE_ARATH 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Arabidopsis thaliana GN=CIMS PE=1 SV=1 | Back alignment and function description |
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| >sp|Q42662|METE_SOLSC 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Solenostemon scutellarioides GN=MET PE=1 SV=2 | Back alignment and function description |
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| >sp|Q93J59|METE_STRCO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=metE PE=3 SV=1 | Back alignment and function description |
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| >sp|B1VV57|METE_STRGG 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) GN=metE PE=3 SV=1 | Back alignment and function description |
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| >sp|Q82LG4|METE_STRAW 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680) GN=metE PE=3 SV=1 | Back alignment and function description |
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| >sp|Q98A73|METE_RHILO 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhizobium loti (strain MAFF303099) GN=metE PE=3 SV=1 | Back alignment and function description |
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| >sp|Q2S338|METE_SALRD 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Salinibacter ruber (strain DSM 13855 / M31) GN=metE PE=3 SV=1 | Back alignment and function description |
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| >sp|B3QGC4|METE_RHOPT 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Rhodopseudomonas palustris (strain TIE-1) GN=metE PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| 151347486 | 765 | methionine synthase [Carica papaya] | 0.668 | 0.287 | 0.920 | 1e-121 | |
| 224125928 | 765 | vitamin-b12 independent methionine synth | 0.668 | 0.287 | 0.911 | 1e-120 | |
| 224146039 | 765 | vitamin-b12 independent methionine synth | 0.668 | 0.287 | 0.911 | 1e-119 | |
| 255569484 | 765 | 5-methyltetrahydropteroyltriglutamate--h | 0.668 | 0.287 | 0.889 | 1e-117 | |
| 449437751 | 765 | PREDICTED: 5-methyltetrahydropteroyltrig | 0.668 | 0.287 | 0.889 | 1e-117 | |
| 113473614 | 765 | methionine synthase [Orobanche ramosa] | 0.668 | 0.287 | 0.884 | 1e-117 | |
| 224131686 | 765 | vitamin-b12 independent methionine synth | 0.668 | 0.287 | 0.876 | 1e-116 | |
| 309756515 | 757 | pollen allergen MetE [Amaranthus retrofl | 0.668 | 0.290 | 0.884 | 1e-116 | |
| 8134568 | 765 | RecName: Full=5-methyltetrahydropteroylt | 0.668 | 0.287 | 0.884 | 1e-116 | |
| 225439223 | 765 | PREDICTED: 5-methyltetrahydropteroyltrig | 0.668 | 0.287 | 0.880 | 1e-116 |
| >gi|151347486|gb|ABS01352.1| methionine synthase [Carica papaya] | Back alignment and taxonomy information |
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Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 208/226 (92%), Positives = 217/226 (96%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKV+ADLRSSIWKQMS+A IKYIPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSDARIKYIPSN 60
Query: 61 TFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFI 120
TFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFI
Sbjct: 61 TFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFI 120
Query: 121 VPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYLLLSKPAKGVAKTFSLLSL 180
VPELGPDV FSYASHKAVTEYKEAK LGV+TVPVL+GPVSYLLLSKPAKGV KTFSLLSL
Sbjct: 121 VPELGPDVTFSYASHKAVTEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVEKTFSLLSL 180
Query: 181 LPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSF 226
L KILP+YKEVISELKAAGASWIQFDEP LV+DLD+HKL AF ++
Sbjct: 181 LNKILPVYKEVISELKAAGASWIQFDEPTLVLDLDAHKLQAFTDAY 226
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Source: Carica papaya Species: Carica papaya Genus: Carica Family: Caricaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224125928|ref|XP_002319710.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222858086|gb|EEE95633.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224146039|ref|XP_002325856.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222862731|gb|EEF00238.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|255569484|ref|XP_002525709.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] gi|223535009|gb|EEF36692.1| 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|449437751|ref|XP_004136654.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Cucumis sativus] gi|449526387|ref|XP_004170195.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|113473614|gb|ABI35986.1| methionine synthase [Orobanche ramosa] | Back alignment and taxonomy information |
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| >gi|224131686|ref|XP_002328083.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] gi|222837598|gb|EEE75963.1| vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|309756515|gb|ADO87039.1| pollen allergen MetE [Amaranthus retroflexus] | Back alignment and taxonomy information |
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| >gi|8134568|sp|P93263.1|METE_MESCR RecName: Full=5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; AltName: Full=Cobalamin-independent methionine synthase isozyme; AltName: Full=Vitamin-B12-independent methionine synthase isozyme gi|1814403|gb|AAB41896.1| methionine synthase [Mesembryanthemum crystallinum] | Back alignment and taxonomy information |
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| >gi|225439223|ref|XP_002276438.1| PREDICTED: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase [Vitis vinifera] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 329 | ||||||
| TAIR|locus:2079434 | 765 | MS2 "methionine synthase 2" [A | 0.674 | 0.290 | 0.828 | 1.7e-152 | |
| TAIR|locus:2170318 | 765 | ATMS1 "methionine synthesis 1" | 0.686 | 0.295 | 0.796 | 1.8e-94 | |
| TAIR|locus:2147147 | 812 | MS3 "methionine synthase 3" [A | 0.686 | 0.278 | 0.738 | 2.5e-90 | |
| TIGR_CMR|BA_4218 | 762 | BA_4218 "5-methyltetrahydropte | 0.601 | 0.259 | 0.419 | 1.4e-61 | |
| DICTYBASE|DDB_G0279211 | 825 | DDB_G0279211 "5-methyltetrahyd | 0.407 | 0.162 | 0.524 | 6.8e-53 | |
| UNIPROTKB|P65340 | 759 | metE "5-methyltetrahydropteroy | 0.699 | 0.303 | 0.436 | 3.9e-48 | |
| UNIPROTKB|G4ML75 | 766 | MGG_06712 "5-methyltetrahydrop | 0.942 | 0.404 | 0.357 | 2.1e-43 | |
| POMBASE|SPAC9.09 | 764 | met26 "homocysteine methyltran | 0.671 | 0.289 | 0.410 | 1.5e-42 | |
| SGD|S000000893 | 767 | MET6 "Cobalamin-independent me | 0.644 | 0.276 | 0.424 | 1.5e-41 | |
| TIGR_CMR|SO_0818 | 760 | SO_0818 "5-methyltetrahydropte | 0.662 | 0.286 | 0.414 | 1.9e-41 |
| TAIR|locus:2079434 MS2 "methionine synthase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 948 (338.8 bits), Expect = 1.7e-152, Sum P(2) = 1.7e-152
Identities = 184/222 (82%), Positives = 193/222 (86%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
MASHIVGYPRMGPKRELKFALESFWDGKSSA+DLQKVSADLRS IWKQMS AGIKYIPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSADDLQKVSADLRSDIWKQMSAAGIKYIPSN 60
Query: 61 TFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFI 120
TFS+YDQVLDTTAMLGAVP RY + GEIG DVYFSMARGNASVPAMEMTKWFDTNYH+I
Sbjct: 61 TFSHYDQVLDTTAMLGAVPSRYGFTSGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
Query: 121 VPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYLLLSKPAKGVAKTFXXXXX 180
VPELGP+VKFSYASHKAV EYKEAK LGVETVPVL+GPVSYLLLSK AKGV K+F
Sbjct: 121 VPELGPEVKFSYASHKAVNEYKEAKALGVETVPVLVGPVSYLLLSKLAKGVDKSFDLLSL 180
Query: 181 XXXXXXXXXEVISELKAAGASWIQFDEPLLVMDLDSHKLHAF 222
EVI+ELKAAGASWIQ DEPL VMDL+ HKL AF
Sbjct: 181 LPKILPVYKEVIAELKAAGASWIQLDEPLFVMDLEGHKLQAF 222
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| TAIR|locus:2170318 ATMS1 "methionine synthesis 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2147147 MS3 "methionine synthase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TIGR_CMR|BA_4218 BA_4218 "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0279211 DDB_G0279211 "5-methyltetrahydropteroyltriglutamate-homocysteine-S-methyltransfe rase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P65340 metE "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
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| UNIPROTKB|G4ML75 MGG_06712 "5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
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| POMBASE|SPAC9.09 met26 "homocysteine methyltransferase Met26" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
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| SGD|S000000893 MET6 "Cobalamin-independent methionine synthase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
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| TIGR_CMR|SO_0818 SO_0818 "5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.1.1.14 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | MS3 | SubName- Full=Putative uncharacterized protein; (766 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | METK2 | • | • | • | 0.918 | ||||||
 | estExt_fgenesh4_pm.C_LG_XVII0132 | • | • | 0.918 | |||||||
 | METK3 | • | • | • | 0.918 | ||||||
 | METK4 | • | • | • | 0.918 | ||||||
 | AdoMet5 | • | • | • | 0.917 | ||||||
 | METK1 | • | • | • | 0.917 | ||||||
 | AdoMet3 | • | • | • | 0.917 | ||||||
 | estExt_Genewise1_v1.C_LG_I3343 | • | • | • | 0.916 | ||||||
 | eugene3.00880022 | • | • | • | 0.916 | ||||||
 | gw1.X.2264.1 | • | • | 0.911 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 329 | |||
| PLN02475 | 766 | PLN02475, PLN02475, 5-methyltetrahydropteroyltrigl | 1e-162 | |
| cd03312 | 360 | cd03312, CIMS_N_terminal_like, CIMS - Cobalamine-i | 1e-133 | |
| PRK05222 | 758 | PRK05222, PRK05222, 5-methyltetrahydropteroyltrigl | 1e-121 | |
| pfam08267 | 310 | pfam08267, Meth_synt_1, Cobalamin-independent synt | 1e-117 | |
| TIGR01371 | 750 | TIGR01371, met_syn_B12ind, 5-methyltetrahydroptero | 1e-111 | |
| PLN02475 | 766 | PLN02475, PLN02475, 5-methyltetrahydropteroyltrigl | 4e-82 | |
| TIGR01371 | 750 | TIGR01371, met_syn_B12ind, 5-methyltetrahydroptero | 7e-65 | |
| PRK05222 | 758 | PRK05222, PRK05222, 5-methyltetrahydropteroyltrigl | 3e-62 | |
| pfam01717 | 324 | pfam01717, Meth_synt_2, Cobalamin-independent synt | 2e-55 | |
| COG0620 | 330 | COG0620, MetE, Methionine synthase II (cobalamin-i | 3e-49 | |
| cd03311 | 332 | cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-i | 1e-45 | |
| PRK04326 | 330 | PRK04326, PRK04326, methionine synthase; Provision | 2e-18 | |
| cd03310 | 321 | cd03310, CIMS_like, CIMS - Cobalamine-independent | 1e-09 | |
| PRK00957 | 305 | PRK00957, PRK00957, methionine synthase; Provision | 6e-08 | |
| cd01143 | 195 | cd01143, YvrC, Periplasmic binding protein YvrC | 0.003 |
| >gnl|CDD|215264 PLN02475, PLN02475, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
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Score = 471 bits (1214), Expect = e-162
Identities = 203/226 (89%), Positives = 214/226 (94%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKV+ADLRSSIWKQMS AGIKYIPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVAADLRSSIWKQMSAAGIKYIPSN 60
Query: 61 TFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFI 120
TFSYYDQVLDTTAMLGAVPPRY W GGEIGFDVYFSMARGNASVPAMEMTKWFDTNYH+I
Sbjct: 61 TFSYYDQVLDTTAMLGAVPPRYGWTGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
Query: 121 VPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYLLLSKPAKGVAKTFSLLSL 180
VPELGP+VKFSYASHKAV EYKEAK LGV+TVPVL+GPVSYLLLSKPAKGV K+F LLSL
Sbjct: 121 VPELGPEVKFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKPAKGVDKSFDLLSL 180
Query: 181 LPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSF 226
L KILP+YKEVI+ELKAAGASWIQFDEP LVMDL+SHKL AF ++
Sbjct: 181 LDKILPVYKEVIAELKAAGASWIQFDEPALVMDLESHKLQAFKTAY 226
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Length = 766 |
| >gnl|CDD|239428 cd03312, CIMS_N_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like | Back alignment and domain information |
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| >gnl|CDD|235367 PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
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| >gnl|CDD|219768 pfam08267, Meth_synt_1, Cobalamin-independent synthase, N-terminal domain | Back alignment and domain information |
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| >gnl|CDD|233381 TIGR01371, met_syn_B12ind, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
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| >gnl|CDD|215264 PLN02475, PLN02475, 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
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| >gnl|CDD|233381 TIGR01371, met_syn_B12ind, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
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| >gnl|CDD|235367 PRK05222, PRK05222, 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
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| >gnl|CDD|216660 pfam01717, Meth_synt_2, Cobalamin-independent synthase, Catalytic domain | Back alignment and domain information |
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| >gnl|CDD|223693 COG0620, MetE, Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
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| >gnl|CDD|239427 cd03311, CIMS_C_terminal_like, CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like | Back alignment and domain information |
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| >gnl|CDD|179825 PRK04326, PRK04326, methionine synthase; Provisional | Back alignment and domain information |
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| >gnl|CDD|239426 cd03310, CIMS_like, CIMS - Cobalamine-independent methonine synthase, or MetE | Back alignment and domain information |
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| >gnl|CDD|234875 PRK00957, PRK00957, methionine synthase; Provisional | Back alignment and domain information |
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| >gnl|CDD|238563 cd01143, YvrC, Periplasmic binding protein YvrC | Back alignment and domain information |
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Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| cd03312 | 360 | CIMS_N_terminal_like CIMS - Cobalamine-independent | 100.0 | |
| PLN02475 | 766 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK05222 | 758 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PF08267 | 310 | Meth_synt_1: Cobalamin-independent synthase, N-ter | 100.0 | |
| TIGR01371 | 750 | met_syn_B12ind 5-methyltetrahydropteroyltriglutama | 100.0 | |
| PRK08575 | 326 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK09121 | 339 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| KOG2263 | 765 | consensus Methionine synthase II (cobalamin-indepe | 100.0 | |
| PRK06520 | 368 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK06233 | 372 | hypothetical protein; Provisional | 100.0 | |
| PRK05222 | 758 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PLN02475 | 766 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| COG0620 | 330 | MetE Methionine synthase II (cobalamin-independent | 100.0 | |
| TIGR01371 | 750 | met_syn_B12ind 5-methyltetrahydropteroyltriglutama | 100.0 | |
| PRK04326 | 330 | methionine synthase; Provisional | 100.0 | |
| PRK01207 | 343 | methionine synthase; Provisional | 100.0 | |
| PF01717 | 324 | Meth_synt_2: Cobalamin-independent synthase, Catal | 100.0 | |
| cd03311 | 332 | CIMS_C_terminal_like CIMS - Cobalamine-independent | 100.0 | |
| PRK00957 | 305 | methionine synthase; Provisional | 100.0 | |
| cd03310 | 321 | CIMS_like CIMS - Cobalamine-independent methonine | 100.0 | |
| KOG2263 | 765 | consensus Methionine synthase II (cobalamin-indepe | 100.0 | |
| PRK06052 | 344 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| PRK06438 | 292 | hypothetical protein; Provisional | 100.0 | |
| cd00465 | 306 | URO-D_CIMS_like The URO-D_CIMS_like protein superf | 99.93 | |
| cd03465 | 330 | URO-D_like The URO-D _like protein superfamily inc | 99.76 | |
| PRK06252 | 339 | methylcobalamin:coenzyme M methyltransferase; Vali | 99.73 | |
| TIGR01463 | 340 | mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi | 99.73 | |
| cd03307 | 326 | Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al | 99.66 | |
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 99.66 | |
| PRK00115 | 346 | hemE uroporphyrinogen decarboxylase; Validated | 99.66 | |
| TIGR01464 | 338 | hemE uroporphyrinogen decarboxylase. This model re | 99.63 | |
| cd00717 | 335 | URO-D Uroporphyrinogen decarboxylase (URO-D) is a | 99.62 | |
| PF01208 | 343 | URO-D: Uroporphyrinogen decarboxylase (URO-D); Int | 99.55 | |
| cd03309 | 321 | CmuC_like CmuC_like. Proteins similar to the putat | 99.48 | |
| cd03308 | 378 | CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro | 99.44 | |
| COG0407 | 352 | HemE Uroporphyrinogen-III decarboxylase [Coenzyme | 99.38 | |
| KOG2872 | 359 | consensus Uroporphyrinogen decarboxylase [Coenzyme | 98.02 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 95.4 | |
| cd00530 | 293 | PTE Phosphotriesterase (PTE) catalyzes the hydroly | 94.53 | |
| COG0646 | 311 | MetH Methionine synthase I (cobalamin-dependent), | 94.52 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 92.87 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 92.83 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 92.29 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 92.15 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 92.14 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 92.04 | |
| PRK08005 | 210 | epimerase; Validated | 91.92 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 90.41 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 90.15 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 89.96 | |
| COG1099 | 254 | Predicted metal-dependent hydrolases with the TIM- | 89.89 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 89.75 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 89.28 | |
| PRK10812 | 265 | putative DNAse; Provisional | 89.2 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 88.64 | |
| TIGR02082 | 1178 | metH 5-methyltetrahydrofolate--homocysteine methyl | 88.03 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 87.99 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 87.71 | |
| PRK14057 | 254 | epimerase; Provisional | 87.48 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 87.04 | |
| PRK08508 | 279 | biotin synthase; Provisional | 86.22 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 85.76 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 85.68 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 85.59 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 85.34 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 84.92 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 84.66 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 84.19 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 83.85 | |
| COG3462 | 117 | Predicted membrane protein [Function unknown] | 83.75 | |
| PRK09490 | 1229 | metH B12-dependent methionine synthase; Provisiona | 83.64 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 83.63 | |
| PF09851 | 31 | SHOCT: Short C-terminal domain; InterPro: IPR01864 | 83.61 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 82.51 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 82.4 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 82.33 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 82.15 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 81.84 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 81.75 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 81.72 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 81.62 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 81.34 | |
| PF05120 | 79 | GvpG: Gas vesicle protein G ; InterPro: IPR007804 | 80.97 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 80.88 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 80.48 | |
| COG0084 | 256 | TatD Mg-dependent DNase [DNA replication, recombin | 80.13 |
| >cd03312 CIMS_N_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, N-terminal domain_like | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-76 Score=556.94 Aligned_cols=322 Identities=43% Similarity=0.719 Sum_probs=292.1
Q ss_pred ceeeccCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccCC
Q 020229 2 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPR 81 (329)
Q Consensus 2 ~t~~~G~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~r 81 (329)
.||++||||+|..||||+|+|+||+|+||.++|++++++++.++|++|+++||+.||||||||||||||++++||+||+|
T Consensus 1 ~~~~~GyPrig~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~~Gl~~it~Gef~~yd~~ld~~~~l~~ip~r 80 (360)
T cd03312 1 KTHILGFPRIGANRELKKALESYWKGKISEEELLATAKELRLRHWKLQKEAGIDLIPVGDFSLYDHVLDTSVLLGAIPER 80 (360)
T ss_pred CCCcCCCCCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCchhHHHHHHHHHHhCCCchh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCCCCCcEeecHHHH
Q 020229 82 YNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSY 161 (329)
Q Consensus 82 ~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~GP~tl 161 (329)
|....+..+++.||+++||..+..+.+|||||||||||++|++.+++++++..++++++|+++++.+.+.||+||||+||
T Consensus 81 ~~~~~~~~~~~~yf~~arg~~~~~~~~mtk~f~tNyhY~vPei~~~~~~~~~~~~~l~~~~~a~~~~~~~K~~i~GP~T~ 160 (360)
T cd03312 81 FGALGGLVDLDTYFAMARGNQDVPALEMTKWFDTNYHYIVPELSPDTEFKLASNKLLDEYLEAKALGINTKPVLLGPVTF 160 (360)
T ss_pred hccccCCccHHHHHHHhcCCCCCcchhceeEecCCCceeCcEECCCcccccCcchHHHHHHHHHhcCCCCcEEEECHHHH
Confidence 98654556789999999997667789999999999999999999998887667889999999999887789999999999
Q ss_pred HhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEE
Q 020229 162 LLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHT 241 (329)
Q Consensus 162 ~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l 241 (329)
+.+++. ...| .+.++++.+|+++|++++++|+++||++||||||+|+.+++.+..+.+.+++|.+.++.+ +..+++
T Consensus 161 ~~ls~~-~~~Y--~~~~el~~dla~~y~~el~~L~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~l~~~~~-~~~l~l 236 (360)
T cd03312 161 LKLSKA-KGGG--FDRLSLLDKLLPVYKELLKKLAAAGAEWVQIDEPALVLDLPEEWLAAFKRAYEELAKAAP-GLKLLL 236 (360)
T ss_pred HHHhcc-cccC--CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEeeCChhhcCCCHHHHHHHHHHHHHHhcCCC-CCcEEE
Confidence 988874 3312 478999999999999999999999999999999999998887777889999999998875 368899
Q ss_pred eecccChHHHHHHHHhCCCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCCc
Q 020229 242 HMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETNI 321 (329)
Q Consensus 242 H~C~Gn~~~i~~~l~~~~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~~ 321 (329)
|+|||+..++++.|.+++||+|++|+++. ...++.+....+.++.+++||||++|+.+|++++++++++++.+++ ++|
T Consensus 237 ~tyfg~~~~~~~~l~~l~Vd~l~le~~~~-~~~l~~l~~~~~~~k~l~lGvId~rn~~~ed~e~i~~~i~~a~~~v-~~~ 314 (360)
T cd03312 237 ATYFGSLGENLDLLASLPVDGLHLDLVRG-PENLEAVLKAGFADKVLSAGVVDGRNIWRADLAASLALLETLAAIL-GDR 314 (360)
T ss_pred EecccchHHHHHHHHcCCCCEEEEEecCC-cccHHHHHhcCCCCCEEEEEEEcCCCCCcCCHHHHHHHHHHHHHHh-cCc
Confidence 99999999999999999999999999875 2344455432334789999999999999999999999999999999 899
Q ss_pred eEeCCCCC
Q 020229 322 LWVNPDLH 329 (329)
Q Consensus 322 l~ispdCG 329 (329)
++||||||
T Consensus 315 l~lsp~Cg 322 (360)
T cd03312 315 LVVSPSCS 322 (360)
T ss_pred EEEECCCC
Confidence 99999998
|
Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the N-terminal barrel, and a few single-barrel sequences most similar to the N-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Side chains fro |
| >PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
|---|
| >PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PF08267 Meth_synt_1: Cobalamin-independent synthase, N-terminal domain; InterPro: IPR013215 Cobalamin-independent methionine synthase, MetE, catalyses the synthesis of the amino acid methionine by the transfer of a methyl group from methyltetrahydrofolate to homocysteine [] | Back alignment and domain information |
|---|
| >TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
|---|
| >PRK08575 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK09121 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK06520 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK06233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK05222 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PLN02475 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase | Back alignment and domain information |
|---|
| >COG0620 MetE Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >TIGR01371 met_syn_B12ind 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase | Back alignment and domain information |
|---|
| >PRK04326 methionine synthase; Provisional | Back alignment and domain information |
|---|
| >PRK01207 methionine synthase; Provisional | Back alignment and domain information |
|---|
| >PF01717 Meth_synt_2: Cobalamin-independent synthase, Catalytic domain; InterPro: IPR002629 This is a domain of vitamin-B12 independent methionine synthases or 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferases, 2 | Back alignment and domain information |
|---|
| >cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like | Back alignment and domain information |
|---|
| >PRK00957 methionine synthase; Provisional | Back alignment and domain information |
|---|
| >cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE | Back alignment and domain information |
|---|
| >KOG2263 consensus Methionine synthase II (cobalamin-independent) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK06052 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase; Provisional | Back alignment and domain information |
|---|
| >PRK06438 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases | Back alignment and domain information |
|---|
| >cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases | Back alignment and domain information |
|---|
| >PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
| >TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
| >cd03307 Mta_CmuA_like MtaA_CmuA_like family | Back alignment and domain information |
|---|
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
| >PRK00115 hemE uroporphyrinogen decarboxylase; Validated | Back alignment and domain information |
|---|
| >TIGR01464 hemE uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
| >cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors | Back alignment and domain information |
|---|
| >PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] | Back alignment and domain information |
|---|
| >cd03309 CmuC_like CmuC_like | Back alignment and domain information |
|---|
| >cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC | Back alignment and domain information |
|---|
| >COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
| >cd00530 PTE Phosphotriesterase (PTE) catalyzes the hydrolysis of organophosphate nerve agents, including the chemical warfare agents VX, soman, and sarin as well as the insecticide paraoxon | Back alignment and domain information |
|---|
| >COG0646 MetH Methionine synthase I (cobalamin-dependent), methyltransferase domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >COG1099 Predicted metal-dependent hydrolases with the TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10812 putative DNAse; Provisional | Back alignment and domain information |
|---|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
| >TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase | Back alignment and domain information |
|---|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
| >COG3462 Predicted membrane protein [Function unknown] | Back alignment and domain information |
|---|
| >PRK09490 metH B12-dependent methionine synthase; Provisional | Back alignment and domain information |
|---|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
| >PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function | Back alignment and domain information |
|---|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
| >PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea | Back alignment and domain information |
|---|
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
| >COG0084 TatD Mg-dependent DNase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 329 | ||||
| 1u1h_A | 765 | A. Thaliana Cobalamine Independent Methionine Synth | 1e-100 | ||
| 1u1h_A | 765 | A. Thaliana Cobalamine Independent Methionine Synth | 4e-51 | ||
| 3pph_A | 789 | Crystal Structure Of The Candida Albicans Methionin | 2e-42 | ||
| 3pph_A | 789 | Crystal Structure Of The Candida Albicans Methionin | 4e-23 | ||
| 3ppf_A | 789 | Crystal Structure Of The Candida Albicans Methionin | 2e-42 | ||
| 3ppf_A | 789 | Crystal Structure Of The Candida Albicans Methionin | 4e-23 | ||
| 3ppc_A | 789 | Crystal Structure Of The Candida Albicans Methionin | 2e-42 | ||
| 3ppc_A | 789 | Crystal Structure Of The Candida Albicans Methionin | 3e-23 | ||
| 1t7l_A | 766 | Crystal Structure Of Cobalamin-Independent Methioni | 1e-32 | ||
| 1t7l_A | 766 | Crystal Structure Of Cobalamin-Independent Methioni | 4e-22 | ||
| 1xr2_A | 766 | Crystal Structure Of Oxidized T. Maritima Cobalamin | 1e-32 | ||
| 1xr2_A | 766 | Crystal Structure Of Oxidized T. Maritima Cobalamin | 4e-22 | ||
| 2nq5_A | 755 | Crystal Structure Of Methyltransferase From Strepto | 2e-31 | ||
| 2nq5_A | 755 | Crystal Structure Of Methyltransferase From Strepto | 5e-28 | ||
| 3l7r_A | 779 | Crystal Structure Of Mete From Streptococcus Mutans | 3e-31 | ||
| 3l7r_A | 779 | Crystal Structure Of Mete From Streptococcus Mutans | 6e-28 | ||
| 1xpg_A | 765 | Crystal Structure Of T. Maritima Cobalamin-Independ | 3e-30 | ||
| 1xpg_A | 765 | Crystal Structure Of T. Maritima Cobalamin-Independ | 6e-21 | ||
| 1xdj_A | 766 | Crystal Structure Of T. Maritima Cobalamin-Independ | 3e-30 | ||
| 1xdj_A | 766 | Crystal Structure Of T. Maritima Cobalamin-Independ | 5e-21 |
| >pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase Length = 765 | Back alignment and structure |
|
| >pdb|1U1H|A Chain A, A. Thaliana Cobalamine Independent Methionine Synthase Length = 765 | Back alignment and structure |
| >pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Threonine Variant Length = 789 | Back alignment and structure |
| >pdb|3PPH|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Threonine Variant Length = 789 | Back alignment and structure |
| >pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Alanine Variant Without Zinc Length = 789 | Back alignment and structure |
| >pdb|3PPF|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Alanine Variant Without Zinc Length = 789 | Back alignment and structure |
| >pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Tyrosine Variant With Zinc Length = 789 | Back alignment and structure |
| >pdb|3PPC|A Chain A, Crystal Structure Of The Candida Albicans Methionine Synthase By Surface Entropy Reduction, Tyrosine Variant With Zinc Length = 789 | Back alignment and structure |
| >pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine Synthase From T. Maritima Length = 766 | Back alignment and structure |
| >pdb|1T7L|A Chain A, Crystal Structure Of Cobalamin-Independent Methionine Synthase From T. Maritima Length = 766 | Back alignment and structure |
| >pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin- Independent Methionine Synthase Complexed With Methyltetrahydrofolate Length = 766 | Back alignment and structure |
| >pdb|1XR2|A Chain A, Crystal Structure Of Oxidized T. Maritima Cobalamin- Independent Methionine Synthase Complexed With Methyltetrahydrofolate Length = 766 | Back alignment and structure |
| >pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus Mutans Length = 755 | Back alignment and structure |
| >pdb|2NQ5|A Chain A, Crystal Structure Of Methyltransferase From Streptococcus Mutans Length = 755 | Back alignment and structure |
| >pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans Length = 779 | Back alignment and structure |
| >pdb|3L7R|A Chain A, Crystal Structure Of Mete From Streptococcus Mutans Length = 779 | Back alignment and structure |
| >pdb|1XPG|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Methyltetrahydrofolate Length = 765 | Back alignment and structure |
| >pdb|1XPG|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Methyltetrahydrofolate Length = 765 | Back alignment and structure |
| >pdb|1XDJ|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Homocysteine Length = 766 | Back alignment and structure |
| >pdb|1XDJ|A Chain A, Crystal Structure Of T. Maritima Cobalamin-Independent Methionine Synthase Complexed With Zn2+ And Homocysteine Length = 766 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Length = 765 | Back alignment and structure |
|---|
Score = 359 bits (924), Expect = e-119
Identities = 203/328 (61%), Positives = 235/328 (71%), Gaps = 2/328 (0%)
Query: 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSN 60
MASHIVGYPRMGPKRELKFALESFWDGKS+AEDLQKVSADLRSSIWKQMS AG K+IPSN
Sbjct: 1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSN 60
Query: 61 TFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFI 120
TF++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPAMEMTKWFDTNYH+I
Sbjct: 61 TFAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYI 120
Query: 121 VPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYLLLSKPAKGVAKTFSLLSL 180
VPELGP+V FSYASHKAV EYKEAK LGV+TVPVL+GPVSYLLLSK AKGV K+F LLSL
Sbjct: 121 VPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSL 180
Query: 181 LPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSF-RITNCGVQDTTQI 239
LPKILPIYKEVI+ELKAAGA+WIQ DEP+LVMDL+ KL AF ++ + + +
Sbjct: 181 LPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLV 240
Query: 240 HTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPR 299
T+ + R + L + + G G + GV D +
Sbjct: 241 ETYFADIPAEAYKTLTSLKGVTAFGFDLVRGTK-TLDLVKAGFPEGKYLFAGVVDGRNIW 299
Query: 300 IPSTEEIADRINKMLAVLETNILWVNPD 327
+ + ++ + L V+
Sbjct: 300 ANDFAASLSTLQALEGIVGKDKLVVSTS 327
|
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* Length = 765 | Back alignment and structure |
|---|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Length = 789 | Back alignment and structure |
|---|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A Length = 789 | Back alignment and structure |
|---|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Length = 755 | Back alignment and structure |
|---|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Length = 755 | Back alignment and structure |
|---|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Length = 766 | Back alignment and structure |
|---|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* Length = 766 | Back alignment and structure |
|---|
| >3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} Length = 357 | Back alignment and structure |
|---|
| >1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Length = 375 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| 1u1j_A | 765 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 3ppg_A | 789 | 5-methyltetrahydropteroyltriglutamate--homocystei | 100.0 | |
| 2nq5_A | 755 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 1t7l_A | 766 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 3rpd_A | 357 | Methionine synthase (B12-independent); structural | 100.0 | |
| 1ypx_A | 375 | Putative vitamin-B12 independent methionine synth | 100.0 | |
| 1t7l_A | 766 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 3ppg_A | 789 | 5-methyltetrahydropteroyltriglutamate--homocystei | 100.0 | |
| 1u1j_A | 765 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 2nq5_A | 755 | 5-methyltetrahydropteroyltriglutamate-- homocystei | 100.0 | |
| 2inf_A | 359 | URO-D, UPD, uroporphyrinogen decarboxylase; (alpha | 99.77 | |
| 1j93_A | 353 | UROD, uroporphyrinogen decarboxylase; beta barrel, | 99.75 | |
| 3cyv_A | 354 | URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ | 99.61 | |
| 1r3s_A | 367 | URO-D, uroporphyrinogen decarboxylase, UPD; uropor | 99.6 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 99.57 | |
| 4ay7_A | 348 | Methylcobalamin\: coenzyme M methyltransferase; TI | 99.49 | |
| 4exq_A | 368 | UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid | 99.47 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 93.66 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 93.11 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 92.99 | |
| 3k2g_A | 364 | Resiniferatoxin-binding, phosphotriesterase- relat | 92.99 | |
| 3rhg_A | 365 | Putative phophotriesterase; hydrolase, amidohydrol | 92.46 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 92.44 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 92.37 | |
| 2ob3_A | 330 | Parathion hydrolase; metalloenzyme, TIM barrel, ne | 91.7 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 91.64 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 91.55 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 91.42 | |
| 3gtx_A | 339 | Organophosphorus hydrolase; mutant, amidohydrolase | 90.56 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 90.09 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 90.0 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 89.66 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 89.03 | |
| 3pnz_A | 330 | Phosphotriesterase family protein; amidohydrolase | 88.4 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 88.19 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 87.32 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 87.11 | |
| 3tn4_A | 360 | Phosphotriesterase; lactonase, hydrolase; HET: KCX | 87.09 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 86.91 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 85.46 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 84.91 | |
| 3ovg_A | 363 | Amidohydrolase; structural genomics, PSI-2, protei | 84.64 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 84.52 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 83.62 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 81.1 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 80.94 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 80.63 |
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-70 Score=558.55 Aligned_cols=327 Identities=62% Similarity=0.984 Sum_probs=291.3
Q ss_pred CceeeccCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccC
Q 020229 1 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPP 80 (329)
Q Consensus 1 ~~t~~~G~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~ 80 (329)
|.||++||||||..||||+|+|+||+|++|.++|+++.+++++++|+.|+++|||+||||||+|||||||++++||+||+
T Consensus 1 ~~~~~~g~PR~g~~reLk~a~e~~~~g~i~~~~L~~~~~~~~~~~~~~Q~~aGld~i~~gdfs~yd~vld~~~~l~~ip~ 80 (765)
T 1u1j_A 1 MASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPP 80 (765)
T ss_dssp -CBBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCG
T ss_pred CCcceecCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEeccCCcccchHHHHHHHHhCCcCc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCCCCCcEeecHHH
Q 020229 81 RYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVS 160 (329)
Q Consensus 81 r~~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~GP~t 160 (329)
||....|..++++||+|+||..++++++|||||||||||++|++.++++|++..++++++|++++++|+..||+|+||+|
T Consensus 81 r~~~~~~~~~~~~yf~~arG~~~~~a~emtkwfdtNyhy~vPe~~~~~~~~~~~~~~l~~~~~ak~~g~~~K~~l~GP~T 160 (765)
T 1u1j_A 81 RYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVS 160 (765)
T ss_dssp GGCCCSSSCCHHHHHHHHHCCSSSCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHH
T ss_pred ceeccccCccHHHHHHHhCCCccccchhhheecccCcCceeeEEcCCcccccCCcchHHHHHHHHhcCCCceEEECCHHH
Confidence 99754444458999999999546789999999999999999999999999877788999999999988888999999999
Q ss_pred HHhhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeE
Q 020229 161 YLLLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIH 240 (329)
Q Consensus 161 l~~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 240 (329)
|+++++....++...+..+++++|+++|++++++|.++||++||||||+|+.+++++..+.+..+++.+.+.++ +.+++
T Consensus 161 ll~l~k~~~~~~~~~~~~~ll~~L~~~y~~~l~~L~~aG~~~VQiDEP~L~~~l~~~~~~~~~~a~~~l~~~~~-~~~i~ 239 (765)
T 1u1j_A 161 YLLLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLS-GLNVL 239 (765)
T ss_dssp HHHTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHTTCCEEEEECGGGGSCCCHHHHHHHHHHHHHSTTTTC-SSEEE
T ss_pred HHHhhhcccccCccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCCccccCCCHHHHHHHHHHHHHHHhhcC-CCeEE
Confidence 99776522222210157899999999999999999999999999999999999987666777777777765444 57899
Q ss_pred EeecccChH-HHHHHHHhCC-CcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcC
Q 020229 241 THMCYSNFN-DIIHSIIDMD-ADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLE 318 (329)
Q Consensus 241 lH~C~Gn~~-~i~~~l~~~~-~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~ 318 (329)
||+|||++. ++++.|.+++ +|+|++|+.+.. +.++.+.+.++.++.+++||||+++...++++++.++++++++++|
T Consensus 240 lhtc~G~~~~~~~~~l~~l~~vd~l~lD~v~~~-~~l~~l~~~l~~~k~L~lGvVdgrni~~~d~e~v~~~l~~~~~~lg 318 (765)
T 1u1j_A 240 VETYFADIPAEAYKTLTSLKGVTAFGFDLVRGT-KTLDLVKAGFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVG 318 (765)
T ss_dssp EECCSSCCCHHHHHHHTTCTTCCEEEEESSSCT-THHHHHHHCCCSSCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHCC
T ss_pred EEeCCCCcchHHHHHHHcCCCCcEEEEEecCCc-ccHHHHHHhcCCCCEEEEEeeCCcccCCCCHHHHHHHHHHHHHhcC
Confidence 999999999 9999999999 999999988765 3455555445568899999999999999999999999999999999
Q ss_pred CCceEeCCCCC
Q 020229 319 TNILWVNPDLH 329 (329)
Q Consensus 319 ~~~l~ispdCG 329 (329)
.+++++||+||
T Consensus 319 ~~~l~lspsCg 329 (765)
T 1u1j_A 319 KDKLVVSTSCS 329 (765)
T ss_dssp SSCEEEEESSC
T ss_pred CCcEEEcCCCC
Confidence 99999999998
|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A | Back alignment and structure |
|---|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A | Back alignment and structure |
|---|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* | Back alignment and structure |
|---|
| >3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} | Back alignment and structure |
|---|
| >1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
| >1t7l_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; TIM barrel, methyltetrahydrofolate, zinc; 2.00A {Thermotoga maritima} PDB: 3bq5_A 3bq6_A 1xdj_A 1xr2_A* 1xpg_A* | Back alignment and structure |
|---|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A | Back alignment and structure |
|---|
| >1u1j_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; methionine, synthase, methyltetrahydrofolate; HET: C2F; 2.40A {Arabidopsis thaliana} SCOP: c.1.22.2 c.1.22.2 PDB: 1u1h_A* 1u1u_A 1u22_A* | Back alignment and structure |
|---|
| >2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A | Back alignment and structure |
|---|
| >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 | Back alignment and structure |
|---|
| >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} | Back alignment and structure |
|---|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* | Back alignment and structure |
|---|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
| >4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A | Back alignment and structure |
|---|
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
| >3k2g_A Resiniferatoxin-binding, phosphotriesterase- related protein; TIM barrel, binuclear zinc, protein structure initiative II (PSI II); 1.80A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
| >3rhg_A Putative phophotriesterase; hydrolase, amidohydrolase, zinc binding site, enzyme functio initiative, EFI; HET: SO4; 1.53A {Proteus mirabilis} | Back alignment and structure |
|---|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
| >2ob3_A Parathion hydrolase; metalloenzyme, TIM barrel, nerve agents; HET: KCX BTB; 1.04A {Brevundimonas diminuta} PDB: 1psc_A* 1jgm_A* 3cak_A* 1ez2_A* 1eyw_A* 1hzy_A 1i0b_A 1i0d_A 1p6b_A* 1p6c_A* 2oql_A* 2o4q_A* 3cs2_A* 3e3h_A* 1qw7_A* 1dpm_A* 2o4m_A* 1pta_A 3c86_A* 2d2j_A ... | Back alignment and structure |
|---|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
| >3gtx_A Organophosphorus hydrolase; mutant, amidohydrolase, alpha-beta barrel; HET: KCX; 1.62A {Deinococcus radiodurans} PDB: 2zc1_A* 3gti_A* 3gu9_A* 3gtf_A* 3gth_A* 3gu2_A* 3gu1_A* 3fdk_A* 3htw_A* | Back alignment and structure |
|---|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
| >3pnz_A Phosphotriesterase family protein; amidohydrolase fold; HET: KCX; 1.60A {Listeria monocytogenes serotype 4b strorganism_taxid} SCOP: c.1.9.0 | Back alignment and structure |
|---|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
| >3tn4_A Phosphotriesterase; lactonase, hydrolase; HET: KCX; 1.50A {Geobacillus kaustophilus} PDB: 3tnb_A* 3tn3_A* 3tn5_A* 3tn6_A* 3ojg_A* 3orw_A* 3f4c_A* 3f4d_A* | Back alignment and structure |
|---|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
| >3ovg_A Amidohydrolase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, NYSGXRC, HAD, PSI; HET: KCX; 2.06A {Mycoplasma synoviae} PDB: 3msr_A* | Back alignment and structure |
|---|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 329 | ||||
| d1u1ha1 | 394 | c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglu | 1e-117 | |
| d1u1ha2 | 365 | c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltrig | 3e-57 |
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 394 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 341 bits (877), Expect = e-117
Identities = 208/334 (62%), Positives = 239/334 (71%), Gaps = 9/334 (2%)
Query: 2 ASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNT 61
ASHIVGYPRMGPKRELKFALESFWDGKS+AEDLQKVSADLRSSIWKQMS AG K+IPSNT
Sbjct: 1 ASHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNT 60
Query: 62 FSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIV 121
F++YDQVLDTTAMLGAVPPRY + GGEIG DVYFSMARGNASVPAMEMTKWFDTNYH+IV
Sbjct: 61 FAHYDQVLDTTAMLGAVPPRYGYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIV 120
Query: 122 PELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYLLLSKPAKGVAKTFSLLSLL 181
PELGP+V FSYASHKAV EYKEAK LGV+TVPVL+GPVSYLLLSK AKGV K+F LLSLL
Sbjct: 121 PELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYLLLSKAAKGVDKSFELLSLL 180
Query: 182 PKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAF---IHSFRITNCGVQDTTQ 238
PKILPIYKEVI+ELKAAGA+WIQ DEP+LVMDL+ KL AF T G+ +
Sbjct: 181 PKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLSGLNVLVE 240
Query: 239 IHTHMCYSNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSP 298
+ + + S+ + A + R + L V G G + GV D +
Sbjct: 241 TYFADIPAEAYKTLTSLKGVTA--FGFDLVRGTKTLDLVK-AGFPEGKYLFAGVVDGRNI 297
Query: 299 RIPSTEEIADRINKMLAVLETNILWVNPD---LH 329
+ + ++ + L V+ LH
Sbjct: 298 WANDFAASLSTLQALEGIVGKDKLVVSTSCSLLH 331
|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 365 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 329 | |||
| d1u1ha1 | 394 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1u1ha2 | 365 | 5-methyltetrahydropteroyltriglutamate--homocystein | 100.0 | |
| d1j93a_ | 343 | Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic | 99.34 | |
| d1r3sa_ | 356 | Uroporphyrinogen decarboxylase, UROD {Human (Homo | 99.33 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 92.65 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 90.36 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 89.96 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 89.9 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 89.76 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 89.24 | |
| d1bf6a_ | 291 | Phosphotriesterase homology protein {Escherichia c | 89.07 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 88.83 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 83.74 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 83.67 | |
| d1tx2a_ | 273 | Dihydropteroate synthetase {Bacillus anthracis [Ta | 82.81 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 82.17 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 81.26 |
| >d1u1ha1 c.1.22.2 (A:2-395) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Cobalamin-independent methionine synthase domain: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=2.5e-75 Score=556.49 Aligned_cols=325 Identities=62% Similarity=0.970 Sum_probs=295.8
Q ss_pred eeeccCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHhCCccccCCCcccchhHHhhhhhcCCccCCC
Q 020229 3 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRY 82 (329)
Q Consensus 3 t~~~G~PRp~~~~eL~~a~~~~~~g~is~~el~~~~~~~~~~~i~~Q~~~Gld~itdGe~~~~d~~ld~~~~~~~~~~r~ 82 (329)
||++||||+|+.||||+|+|+||+|+||.++|+++.+++++++|+.|+++|||+||||||+|||||||++.+||++|+||
T Consensus 2 ~~~lG~PRig~~RELK~A~E~yw~G~is~~eL~~~~~~~~~~~~~~Q~~aGid~I~~GeFs~yD~vLD~~~~~g~iP~Rf 81 (394)
T d1u1ha1 2 SHIVGYPRMGPKRELKFALESFWDGKSTAEDLQKVSADLRSSIWKQMSAAGTKFIPSNTFAHYDQVLDTTAMLGAVPPRY 81 (394)
T ss_dssp BBCSCCCCSCTTCHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCSBCEESCCCSSCHHHHHHHHTTCCCGGG
T ss_pred CCcCcCCCCCCchHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCeeccCCccchHHHHHHHHHcCCccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcchhhhhhhhhCCCCCCcccccccccCCceeeeceecCCCceeecchhcHHHHHHHHhcCCCCCcEeecHHHHH
Q 020229 83 NWNGGEIGFDVYFSMARGNASVPAMEMTKWFDTNYHFIVPELGPDVKFSYASHKAVTEYKEAKGLGVETVPVLIGPVSYL 162 (329)
Q Consensus 83 ~~~~~~~~~~~~f~~~~g~~~~~~~~~~~~f~~n~~y~~P~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~GP~tl~ 162 (329)
+...+..++++||+++||+.++.+++|+|||||||||++|++.++.+|++....++++|++++..|..+||+++||+|++
T Consensus 82 ~~~~~~~~ld~yFa~arg~~~~~a~emtkwfdtnyhy~vPe~~~~~~~~l~~~~~~~~~~ea~~~g~~~Kpvl~GP~T~l 161 (394)
T d1u1ha1 82 GYTGGEIGLDVYFSMARGNASVPAMEMTKWFDTNYHYIVPELGPEVNFSYASHKAVNEYKEAKALGVDTVPVLVGPVSYL 161 (394)
T ss_dssp CCCSSSCCHHHHHHHHHCBTTBCCCCEEECTTSSCEEECCEECTTCCCCCCCCHHHHHHHHHHHTTCCCEEEEECHHHHH
T ss_pred ccccccccHHHHHHHHhcCCcccccccccccCCCCCccCCccCCCccccccchhHHHHHHHHhhcCCccccccCCHHHHH
Confidence 88777778999999999999999999999999999999999999888888788899999999988888999999999999
Q ss_pred hhcCCCCCccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEEecCCccCCCCChHHHHHHHHHHHHHHcCCCCCceeEEe
Q 020229 163 LLSKPAKGVAKTFSLLSLLPKILPIYKEVISELKAAGASWIQFDEPLLVMDLDSHKLHAFIHSFRITNCGVQDTTQIHTH 242 (329)
Q Consensus 163 ~~~~~~~~y~~~~~~~~l~~~la~~~~~~i~~l~~aG~~~IQiDEP~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~lH 242 (329)
++++...+...+.+..+++++|+++|++++++|.++||+|||||||+|+.+++++..+.+.++|+.+.+..+ +.++.+|
T Consensus 162 ~l~k~~~~~~~~~~~~~ll~~L~~aY~~~l~~L~~aG~~~VQiDEP~L~~dl~~~~~~~~~~ay~~l~~~~~-~~~i~l~ 240 (394)
T d1u1ha1 162 LLSKAAKGVDKSFELLSLLPKILPIYKEVITELKAAGATWIQLDEPVLVMDLEGQKLQAFTGAYAELESTLS-GLNVLVE 240 (394)
T ss_dssp HTCEECTTCCTTCCGGGGHHHHHHHHHHHHHHHHHHTCCEEEEECGGGGSCCCHHHHHHHHHHHHHHTTTTT-TSEEEEE
T ss_pred HHhcccCCCccccCHHHHHHHHHHHHHHHHHHHHhccCCEEEeeccchhccCCHHHHHHHHHHHHHHHhhcC-CCCceEE
Confidence 887643221112467899999999999999999999999999999999999998888999999999987766 4789999
Q ss_pred ecccChH-HHHHHHHhC-CCcEEEEEcCCCchhHHHHhhhcccCCCeeeeeeecCCCCCCCCHHHHHHHHHHHHHhcCCC
Q 020229 243 MCYSNFN-DIIHSIIDM-DADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTEEIADRINKMLAVLETN 320 (329)
Q Consensus 243 ~C~Gn~~-~i~~~l~~~-~~d~~~lE~~~~~~~~l~~l~~~~~~~~~i~~Gvvd~~~~~~e~~e~i~~ri~~a~~~v~~~ 320 (329)
+|||+.. +.++.|..+ +||++++|+.+.+......+. .++.+|.+++||||++|..+|++++++++|+++.+++|++
T Consensus 241 tyfg~~~~~~~~~l~~~~~Vd~l~lD~~~~~~~l~~~~~-~~p~~k~L~~GVVdgrniw~ed~e~v~~~i~~~~~~v~~e 319 (394)
T d1u1ha1 241 TYFADIPAEAYKTLTSLKGVTAFGFDLVRGTKTLDLVKA-GFPEGKYLFAGVVDGRNIWANDFAASLSTLQALEGIVGKD 319 (394)
T ss_dssp CCSSCCCHHHHHHHTTCTTCCEEEEETTTCTTHHHHHHH-CCCTTCEEEEEEECSSSCBCCCHHHHHHHHHHHHHHSCSS
T ss_pred eccCCCchhhHHHHhhcCCCCeeEEEeecCccchHHHHH-hCCcccEEEeeeEecCCCCcCCHHHHHHHHHHHHHhCCcc
Confidence 9999974 577888775 699999999986654433333 4567999999999999999999999999999999999999
Q ss_pred ceEeCCCCC
Q 020229 321 ILWVNPDLH 329 (329)
Q Consensus 321 ~l~ispdCG 329 (329)
||++|||||
T Consensus 320 rl~lspsCs 328 (394)
T d1u1ha1 320 KLVVSTSCS 328 (394)
T ss_dssp CEEEEESSC
T ss_pred cEEEeCCCC
Confidence 999999997
|
| >d1u1ha2 c.1.22.2 (A:396-760) 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase MetE {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
| >d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} | Back information, alignment and structure |
|---|
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
| >d1bf6a_ c.1.9.3 (A:) Phosphotriesterase homology protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|