Citrus Sinensis ID: 020236

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MEANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHccccccccccccHHHHHHccccEEEEccccccccccHHHHHHHHHHcccHHHHcccEEEEcccHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHccEEcccccccccccccHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHccccEEEEEcccccccHHHHHHcccEEEcccccccccccccccccccHHHHHcccccEEEEcHHHHHHHHHHHHHHcccEEccccHHHHHHHHccccccccccccccEEEEEEccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHcccEEEEcccccccccEHHHHHHHHHHHccHHHHHccEEEEccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHcccEEEcccccHHHHccHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHcccEEEEccccEEEccEEEEccHHHHHHHHHHHccEEEccHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccccHHHHHHHHcc
Coil and Loop (DISEMBL)
MEANGEKYAANFSSIKEAQKRISLYihktpvlssetlnsmsgrslffkcecfqkggafkfrgasnavlsldedqaiKGVVTHSSGNHAAALSLAAKLrgipayivipknapkckveNVVRYGGQVIWSEATMHSRESVASKVLEETGAvlvhpyndgriisgqgtislefleqvplldtiivpisggglISGVALAAKSIKPAIRILaaepigandaaqSKAAGRIITLLETNTVADGLRAFlgdltwpivrDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVlsdgfrknpawqdskkIGIVLSGGNVDLGVLWDSFRK
Flexible Loop (DISEMBL)
meangekyAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVipknapkckvENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAflgdltwpiVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSkkigivlsggnvdlgvlwdsfrk
Low Complexity Region (SEG)
MEANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK
Disordered region (IsUnstruct)
********************RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWD****
Disordered Region (DISOPRED)
************SSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK
Disordered Region (DISEMBL)
********AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK
Disordered Region (DISPRO)
******KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q2PGG3	331	Serine racemase OS=Arabid	yes	no	0.996	0.990	0.801	1e-148
Q7XSN8	339	Serine racemase OS=Oryza	yes	no	0.993	0.964	0.721	1e-139
A2XWA9	339	Serine racemase OS=Oryza	N/A	no	0.993	0.964	0.721	1e-139
Q9GZT4	340	Serine racemase OS=Homo s	yes	no	0.960	0.929	0.490	8e-87
A0JNI4	334	Serine racemase OS=Bos ta	yes	no	0.960	0.946	0.465	7e-86
Q54HH2	324	Probable serine racemase	yes	no	0.930	0.944	0.495	1e-85
Q76EQ0	333	Serine racemase OS=Rattus	yes	no	0.957	0.945	0.492	2e-79
Q9QZX7	339	Serine racemase OS=Mus mu	yes	no	0.957	0.929	0.476	1e-76
P36007	326	Threo-3-hydroxyaspartate	yes	no	0.924	0.932	0.435	2e-61
O59791	323	Serine racemase OS=Schizo	yes	no	0.924	0.941	0.425	2e-59

>sp|Q2PGG3|SRR_ARATH Serine racemase OS=Arabidopsis thaliana GN=SR PE=1 SV=1

 Score =  525 bits (1352), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/328 (80%), Positives = 298/328 (90%)

Query: 1   MEANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKF 60
           MEAN EKYAA+  SIKEA  RI  YIH+TPVL+SE+LNS+SGRSLFFKCEC QKGGAFKF
Sbjct: 1   MEANREKYAADILSIKEAHDRIKPYIHRTPVLTSESLNSISGRSLFFKCECLQKGGAFKF 60

Query: 61  RGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR 120
           RGA NAVLSLD +QA KGVVTHSSGNHAAALSLAAK++GIPAYIV+PK APKCKV+NV+R
Sbjct: 61  RGACNAVLSLDAEQAAKGVVTHSSGNHAAALSLAAKIQGIPAYIVVPKGAPKCKVDNVIR 120

Query: 121 YGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTI 180
           YGG+VIWSEATM SRE +ASKVL+ETG+VL+HPYNDGRIISGQGTI+LE LEQ+  +D I
Sbjct: 121 YGGKVIWSEATMSSREEIASKVLQETGSVLIHPYNDGRIISGQGTIALELLEQIQEIDAI 180

Query: 181 IVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR 240
           +VPISGGGLISGVALAAKSIKP+IRI+AAEP GA+DAAQSK AG+IITL  TNT+ADGLR
Sbjct: 181 VVPISGGGLISGVALAAKSIKPSIRIIAAEPKGADDAAQSKVAGKIITLPVTNTIADGLR 240

Query: 241 AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN 300
           A LGDLTWP+VRDLVDDV+T+E+ EIIEAMK+CYEILKV+VEPSGAIGLAAVLS+ FR N
Sbjct: 241 ASLGDLTWPVVRDLVDDVVTLEECEIIEAMKMCYEILKVSVEPSGAIGLAAVLSNSFRNN 300

Query: 301 PAWQDSKKIGIVLSGGNVDLGVLWDSFR 328
           P+ +D K IGIVLSGGNVDLG LWDSF+
Sbjct: 301 PSCRDCKNIGIVLSGGNVDLGSLWDSFK 328

Catalyzes the synthesis of D-serine from L-serine. Has dehydratase activity towards both L-serine and D-serine. Displays high substrate specificity for L-serine, whereas L-alanine, L-arginine, and L-glutamine were poor substrates.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 8

>sp|Q7XSN8|SRR_ORYSJ Serine racemase OS=Oryza sativa subsp. japonica GN=SERR PE=1 SV=2

 Score =  493 bits (1270), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/327 (72%), Positives = 286/327 (87%)

Query: 3   ANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRG 62
           A    YAA+  SI+EAQ RI+ Y+HKTPVLSS +++++ G+ LFFKCECFQK GAFK RG
Sbjct: 12  AESHGYAADIHSIREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRG 71

Query: 63  ASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYG 122
           ASN++ +LD+D+A KGVVTHSSGNHAAA++LAAKLRGIPAYIVIP+NAP CKV+NV RYG
Sbjct: 72  ASNSIFALDDDEASKGVVTHSSGNHAAAVALAAKLRGIPAYIVIPRNAPACKVDNVKRYG 131

Query: 123 GQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIV 182
           G +IWS+ ++ SRESVA +V EETGA+LVHP+N+   ISGQGT+SLE LE+VP +DTIIV
Sbjct: 132 GHIIWSDVSIESRESVAKRVQEETGAILVHPFNNKNTISGQGTVSLELLEEVPEIDTIIV 191

Query: 183 PISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF 242
           PISGGGLISGVALAAK+I P+IRILAAEP GA+D+AQSKAAG+IITL  TNT+ADGLRAF
Sbjct: 192 PISGGGLISGVALAAKAINPSIRILAAEPKGADDSAQSKAAGKIITLPSTNTIADGLRAF 251

Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
           LGDLTWP+VRDLVDD+I V+D  I++AMK+CYE+LKVAVEPSGAIGLAA LSD F+++ A
Sbjct: 252 LGDLTWPVVRDLVDDIIVVDDNAIVDAMKMCYEMLKVAVEPSGAIGLAAALSDEFKQSSA 311

Query: 303 WQDSKKIGIVLSGGNVDLGVLWDSFRK 329
           W +S KIGI++SGGNVDLGVLW+S  K
Sbjct: 312 WHESSKIGIIVSGGNVDLGVLWESLYK 338

Catalyzes the synthesis of D-serine from L-serine. Has dehydratase activity towards both L-serine and D-serine.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|A2XWA9|SRR_ORYSI Serine racemase OS=Oryza sativa subsp. indica GN=OsI_16936 PE=3 SV=1

 Score =  493 bits (1270), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 236/327 (72%), Positives = 286/327 (87%)

Query: 3   ANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRG 62
           A    YAA+  SI+EAQ RI+ Y+HKTPVLSS +++++ G+ LFFKCECFQK GAFK RG
Sbjct: 12  AESHGYAADIHSIREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRG 71

Query: 63  ASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYG 122
           ASN++ +LD+D+A KGVVTHSSGNHAAA++LAAKLRGIPAYIVIP+NAP CKV+NV RYG
Sbjct: 72  ASNSIFALDDDEASKGVVTHSSGNHAAAVALAAKLRGIPAYIVIPRNAPACKVDNVKRYG 131

Query: 123 GQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIV 182
           G +IWS+ ++ SRESVA +V EETGA+LVHP+N+   ISGQGT+SLE LE+VP +DTIIV
Sbjct: 132 GHIIWSDVSIESRESVAKRVQEETGAILVHPFNNKNTISGQGTVSLELLEEVPEIDTIIV 191

Query: 183 PISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF 242
           PISGGGLISGVALAAK+I P+IRILAAEP GA+D+AQSKAAG+IITL  TNT+ADGLRAF
Sbjct: 192 PISGGGLISGVALAAKAINPSIRILAAEPKGADDSAQSKAAGKIITLPSTNTIADGLRAF 251

Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
           LGDLTWP+VRDLVDD+I V+D  I++AMK+CYE+LKVAVEPSGAIGLAA LSD F+++ A
Sbjct: 252 LGDLTWPVVRDLVDDIIVVDDNAIVDAMKMCYEMLKVAVEPSGAIGLAAALSDEFKQSSA 311

Query: 303 WQDSKKIGIVLSGGNVDLGVLWDSFRK 329
           W +S KIGI++SGGNVDLGVLW+S  K
Sbjct: 312 WHESSKIGIIVSGGNVDLGVLWESLYK 338

Catalyzes the synthesis of D-serine from L-serine (By similarity). Has dehydratase activity towards both L-serine and D-serine.

Oryza sativa subsp. indica (taxid: 39946)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q9GZT4|SRR_HUMAN Serine racemase OS=Homo sapiens GN=SRR PE=1 SV=1

 Score =  320 bits (821), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 159/324 (49%), Positives = 225/324 (69%), Gaps = 8/324 (2%)

Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
           +Y  +F+ +++A   I   IH TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct: 4   QYCISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNA 63

Query: 67  VLSLDED---QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
           V SL  D   +  K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG 
Sbjct: 64  VRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGA 123

Query: 124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
            +++ E +  SRE+VA +V EET  ++VHP  +  +I+GQGTI+LE L QVPL+D ++VP
Sbjct: 124 SIVYCEPSDESRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183

Query: 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRAF 242
           + GGG+++G+A+  K++KP++++ AAEP  A+D  QSK  G+++  L    T+ADG+++ 
Sbjct: 184 VGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS 243

Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
           +G  TWPI+RDLVDD+ TV + EI  A +L +E +K+ +EP+  +G+AAVLS  F+    
Sbjct: 244 IGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQT--V 301

Query: 303 WQDSKKIGIVLSGGNVDL--GVLW 324
             + K I IVLSGGNVDL   + W
Sbjct: 302 SPEVKNICIVLSGGNVDLTSSITW 325

Catalyzes the synthesis of D-serine from L-serine. D-serine is a key coagonist with glutamate at NMDA receptors. Has dehydratase activity towards both L-serine and D-serine.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|A0JNI4|SRR_BOVIN Serine racemase OS=Bos taurus GN=SRR PE=2 SV=1

 Score =  317 bits (812), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 150/322 (46%), Positives = 224/322 (69%), Gaps = 6/322 (1%)

Query: 6   EKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASN 65
           ++Y  +F+ +++A   I  +IH TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA N
Sbjct: 3   DQYCISFADVEKAHINIRDFIHLTPVLTSSILNQITGRNLFFKCELFQKTGSFKIRGALN 62

Query: 66  AV---LSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYG 122
           A+   +S   ++  + VV HSSGNH  ALS AA+L GIPAY+++P+ AP CK   +  YG
Sbjct: 63  AIRGLISAHPEEKPRAVVAHSSGNHGQALSFAARLEGIPAYVIVPETAPNCKKLAIQAYG 122

Query: 123 GQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIV 182
             +++SE +  SRE++  ++ EET  ++VHP  +  +I+GQGTI++E L QVPL+D ++V
Sbjct: 123 ASIVYSEQSEESRENITKRIAEETEGIMVHPNQEPAVIAGQGTIAMEVLNQVPLVDALVV 182

Query: 183 PISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRA 241
           P+ GGG+++G+A+  K+++P++++ AAEP+ A+D  QSK  G +        T+ADG+++
Sbjct: 183 PVGGGGMLAGIAVTVKALRPSVKVYAAEPLNADDCYQSKLKGELTPNPYPPETIADGIKS 242

Query: 242 FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNP 301
            +G  TWPI+RDLVDDV TV + EI  A +L +E +K+ +EP+  +G+A VLS  FR  P
Sbjct: 243 SIGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWERMKLLIEPTAGVGVAVVLSQHFRTVP 302

Query: 302 AWQDSKKIGIVLSGGNVDLGVL 323
           A  + K I IVLSGGNVDL  L
Sbjct: 303 A--EVKNICIVLSGGNVDLTSL 322

Catalyzes the synthesis of D-serine from L-serine. D-serine is a key coagonist with glutamate at NMDA receptors. Has dehydratase activity towards both L-serine and D-serine.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q54HH2|SRR_DICDI Probable serine racemase OS=Dictyostelium discoideum GN=srr PE=3 SV=1

 Score =  316 bits (810), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 154/311 (49%), Positives = 217/311 (69%), Gaps = 5/311 (1%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
              IKEA KRI  YIHKTPVL++ T+N ++G+ L+FKCE  QK G+FK RGA NA+ SLD
Sbjct: 9   LKDIKEAHKRIEKYIHKTPVLTNSTINELAGKELYFKCENLQKTGSFKMRGACNAIFSLD 68

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
           E++  KGVVTHSSGNH  ALS A+K+R +  Y+V+P++AP  K+  +  YG  V   +AT
Sbjct: 69  EEELSKGVVTHSSGNHGQALSYASKVRCVKCYVVVPEDAPSVKLNAICGYGATVTKCKAT 128

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
           + +RES   +++E+    L+HP+++ ++I+GQGT SLE +EQV  LD II P+ GGGL+S
Sbjct: 129 LEARESNTKQLIEQHSCKLIHPFDNLQVIAGQGTASLELMEQVENLDAIITPVGGGGLLS 188

Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII--TLLETNTVADGLRAFLGDLTWP 249
           G  + AKS+ P I++ AAEP+GA+D  +S  +G I   T  + NT+ADGL   +G LT+P
Sbjct: 189 GTCITAKSLNPNIKVFAAEPLGADDTYRSLLSGEIQKHTPGKPNTIADGLLTTVGSLTFP 248

Query: 250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKI 309
           I+++  D VI V + EI  AMKL +E +K+ +EPS A  LAA+L   F+     +D KK+
Sbjct: 249 IIKENCDGVILVTEDEIKYAMKLVWERMKIIIEPSSATTLAAILKQEFKDK---KDIKKV 305

Query: 310 GIVLSGGNVDL 320
           GI++SGGNVDL
Sbjct: 306 GIIISGGNVDL 316

May catalyze the synthesis of D-serine from L-serine. May have serine dehydratase activity.

Dictyostelium discoideum (taxid: 44689)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q76EQ0|SRR_RAT Serine racemase OS=Rattus norvegicus GN=Srr PE=1 SV=1

 Score =  296 bits (757), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/321 (49%), Positives = 222/321 (69%), Gaps = 6/321 (1%)

Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
           +Y  +F+ +++A   I   +H TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct: 4   QYCISFADVEKAHLNIQDSVHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNA 63

Query: 67  VLSLDEDQ---AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
           +  L  D      K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG 
Sbjct: 64  IRGLIPDTLEGKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGA 123

Query: 124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
            +++SE +  SRE+VA ++++ET  +LVHP  +  +I+GQGTI+LE L QVPL+D ++VP
Sbjct: 124 SIVYSEPSDESRENVAQRIIQETEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183

Query: 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRAF 242
           + GGG+++G+A+  K++KP++++ AAEP  A+D  QSK  G +   L    T+ADG+++ 
Sbjct: 184 VGGGGMVAGIAITIKTLKPSVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGVKSS 243

Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
           +G  TWPI+RDLVDDV TV + EI  A +L +E +K+ +EP+  +GLAAVLS  F+    
Sbjct: 244 IGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWERMKLLIEPTAGVGLAAVLSQHFQT--V 301

Query: 303 WQDSKKIGIVLSGGNVDLGVL 323
             + K I IVLSGGNVDL  L
Sbjct: 302 SPEVKNICIVLSGGNVDLTSL 322

Catalyzes the synthesis of D-serine from L-serine. D-serine is a key coagonist with glutamate at NMDA receptors. Has dehydratase activity towards both L-serine and D-serine.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|Q9QZX7|SRR_MOUSE Serine racemase OS=Mus musculus GN=Srr PE=1 SV=1

 Score =  286 bits (733), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/321 (47%), Positives = 218/321 (67%), Gaps = 6/321 (1%)

Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
           +Y  +F+ +++A   I   IH TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct: 4   QYCISFADVEKAHINIQDSIHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNA 63

Query: 67  VLSLDED---QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
           +  L  D   +  K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG 
Sbjct: 64  IRGLIPDTPEEKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGA 123

Query: 124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
            +++ + +  SRE V  ++++ET  +LVHP  +  +I+GQGTI+LE L QVPL+D ++VP
Sbjct: 124 SIVYCDPSDESREKVTQRIMQETEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183

Query: 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRAF 242
           + GGG+++G+A+  K++KP++++ AAEP  A+D  QSK  G +   L    T+ADG+++ 
Sbjct: 184 VGGGGMVAGIAITIKALKPSVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGVKSS 243

Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
           +G  TWPI+RDLVDDV TV + EI  A +L +  +K+ +EP+  + LAAVLS  F+    
Sbjct: 244 IGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWGRMKLLIEPTAGVALAAVLSQHFQT--V 301

Query: 303 WQDSKKIGIVLSGGNVDLGVL 323
             + K + IVLSGGNVDL  L
Sbjct: 302 SPEVKNVCIVLSGGNVDLTSL 322

Catalyzes the synthesis of D-serine from L-serine. D-serine is a key coagonist with glutamate at NMDA receptors. Has dehydratase activity towards both L-serine and D-serine.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

>sp|P36007|SRY1_YEAST Threo-3-hydroxyaspartate ammonia-lyase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SRY1 PE=1 SV=1

 Score =  236 bits (602), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 135/310 (43%), Positives = 193/310 (62%), Gaps = 6/310 (1%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
           +  + +A  RI  Y++KTPVL+S  LN   G  ++FK E FQ+ GAFKFRGA NAV  L 
Sbjct: 6   YGDVLDASNRIKEYVNKTPVLTSRMLNDRLGAQIYFKGENFQRVGAFKFRGAMNAVSKLS 65

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
           +++  KGV+  SSGNHA A++L+AKL  +PA IV+P++AP  KV     YG  +I     
Sbjct: 66  DEKRSKGVIAFSSGNHAQAIALSAKLLNVPATIVMPEDAPALKVAATAGYGAHIIRYNRY 125

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
              RE +  ++  E G  L+ PY+   +I+GQGT + E LE+V  LD + VP+ GGGL+S
Sbjct: 126 TEDREQIGRQLAAEHGFALIPPYDHPDVIAGQGTSAKELLEEVGQLDALFVPLGGGGLLS 185

Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPI 250
           G ALAA+S+ P  +I   EP   ND  QS  +G I+ +    T+ADG +   LG+ T+ I
Sbjct: 186 GSALAARSLSPGCKIFGVEPEAGNDGQQSFRSGSIVHINTPKTIADGAQTQHLGEYTFAI 245

Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
           +R+ VDD++TV D+E+++ M    E +KV VEP+  +G A  L    +K       KK+G
Sbjct: 246 IRENVDDILTVSDQELVKCMHFLAERMKVVVEPTACLGFAGAL---LKKEELV--GKKVG 300

Query: 311 IVLSGGNVDL 320
           I+LSGGNVD+
Sbjct: 301 IILSGGNVDM 310

Exhibits dehydratase activity specific for L-threo-3-hydroxyaspartate.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 4

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: 6

>sp|O59791|SRR_SCHPO Serine racemase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SRR PE=1 SV=1

 Score =  229 bits (584), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 132/310 (42%), Positives = 192/310 (61%), Gaps = 6/310 (1%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
           +  +  A +RI  + +KTPVL+S T+N      +FFKCE FQK GAFKFRGA NA+  L+
Sbjct: 10  YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 69

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
           E Q   GV+T SSGNHA A++L+AK+ GIPA I++P +AP+ KV     YGGQVI  +  
Sbjct: 70  EAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY 129

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
              RE +A ++ E  G  ++ PY+   +++GQGT + E  E+V  LD + V + GGGL+S
Sbjct: 130 KDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLS 189

Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPI 250
           G ALAA+   P   +   EP   ND  QS   G I+ +    T+ADG +   LG+ T+ I
Sbjct: 190 GSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSI 249

Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
           +++ VDD++TV D+E+I+ +K     +K+ VEP+G +  AA      R       +K+IG
Sbjct: 250 IKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAA-----RAMKEKLKNKRIG 304

Query: 311 IVLSGGNVDL 320
           I++SGGNVD+
Sbjct: 305 IIISGGNVDI 314

Catalyzes the synthesis of D-serine from L-serine. Has dehydratase activity towards both L-serine and D-serine.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
225426387	333	PREDICTED: probable serine racemase [Vit	1.0	0.987	0.810	1e-152
255537429	339	Serine racemase, putative [Ricinus commu	0.984	0.955	0.820	1e-151
297809443	331	signal-responsive protein [Arabidopsis l	0.996	0.990	0.798	1e-147
145340114	331	serine racemase [Arabidopsis thaliana] g	0.996	0.990	0.801	1e-146
449495833	333	PREDICTED: serine racemase-like [Cucumis	0.984	0.972	0.780	1e-145
357520483	333	Serine racemase [Medicago truncatula] gi	0.981	0.969	0.783	1e-144
4539455	346	putative protein [Arabidopsis thaliana]	0.996	0.947	0.766	1e-143
388518763	333	unknown [Medicago truncatula]	0.981	0.969	0.780	1e-143
356513403	335	PREDICTED: probable serine racemase-like	0.981	0.964	0.767	1e-143
217073856	333	unknown [Medicago truncatula]	0.981	0.969	0.773	1e-142

>gi|225426387|ref|XP_002269706.1| PREDICTED: probable serine racemase [Vitis vinifera] gi|297742536|emb|CBI34685.3| unnamed protein product [Vitis vinifera]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 270/333 (81%), Positives = 302/333 (90%), Gaps = 4/333 (1%)

Query: 1   MEANGE----KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGG 56
           MEA  E    +YAA+ SSI+EAQ RI+ +IHKTPVL+SETLNS++GR LFFKCECFQKGG
Sbjct: 1   MEAENEIRSKRYAADISSIREAQVRINSFIHKTPVLTSETLNSLAGRGLFFKCECFQKGG 60

Query: 57  AFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVE 116
           AFKFRGA NA+ SLD++QA KGVVTHSSGNHAAALSLAAKLRGIPAYIVIP+NAP+CKVE
Sbjct: 61  AFKFRGACNAIFSLDDEQAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPRCKVE 120

Query: 117 NVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPL 176
           NV+RYGGQVIWS ATM SRE +A++VL+ETGAVL+HPYNDGRIISGQGT+SLE LEQ P 
Sbjct: 121 NVIRYGGQVIWSRATMQSREDIATRVLQETGAVLLHPYNDGRIISGQGTVSLELLEQAPQ 180

Query: 177 LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVA 236
           +DTI+VPISGGGLISGVALAAKSI P+IR+ AAEP GANDAAQSK AGRIITL ETNT+A
Sbjct: 181 IDTIMVPISGGGLISGVALAAKSINPSIRVFAAEPKGANDAAQSKNAGRIITLPETNTIA 240

Query: 237 DGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDG 296
           DGLRA LGDLTWP+VRDLVDD+I VEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSD 
Sbjct: 241 DGLRASLGDLTWPVVRDLVDDIIVVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDS 300

Query: 297 FRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK 329
           F+KNPAW++ + +GIVLSGGNVDLGVLWDS  K
Sbjct: 301 FKKNPAWKNCRNVGIVLSGGNVDLGVLWDSLGK 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537429|ref|XP_002509781.1| Serine racemase, putative [Ricinus communis] gi|223549680|gb|EEF51168.1| Serine racemase, putative [Ricinus communis]

 Score =  542 bits (1396), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/324 (82%), Positives = 296/324 (91%)

Query: 6   EKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASN 65
           EKYAA+ SSI+EA  RI+ +IHKTPVLSSE+LN++SGR LFFKCECFQKGGAFKFRGA N
Sbjct: 10  EKYAADISSIREAHARINPFIHKTPVLSSESLNALSGRKLFFKCECFQKGGAFKFRGACN 69

Query: 66  AVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV 125
           A+ SLD+DQ  KGVVTHSSGNHAAALSLAAKLRGIPAYIV+PK AP+CKVENV+RYGGQV
Sbjct: 70  AIFSLDDDQTAKGVVTHSSGNHAAALSLAAKLRGIPAYIVVPKTAPRCKVENVIRYGGQV 129

Query: 126 IWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPIS 185
           IWSE ++HSRESVA+KV++ETGAVL+HPYND RIISGQGTISLE LEQ P +DTIIVPIS
Sbjct: 130 IWSEPSLHSRESVATKVVQETGAVLIHPYNDRRIISGQGTISLELLEQAPQIDTIIVPIS 189

Query: 186 GGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD 245
           GGGLISGVALAAKSI P+IRILAAEP GANDAAQSKAAG IITL ETNT+ADGLRA LG 
Sbjct: 190 GGGLISGVALAAKSINPSIRILAAEPKGANDAAQSKAAGEIITLPETNTIADGLRASLGS 249

Query: 246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQD 305
           LTWP+VRDLVDDVIT+ED EI+EAMKLCYEILKVA+EPSG IGLAA+LSD F+KNP W+D
Sbjct: 250 LTWPVVRDLVDDVITLEDNEIVEAMKLCYEILKVAIEPSGVIGLAAILSDSFQKNPNWKD 309

Query: 306 SKKIGIVLSGGNVDLGVLWDSFRK 329
              IGI+LSGGNVDLGV+WDSFRK
Sbjct: 310 CSNIGIILSGGNVDLGVIWDSFRK 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809443|ref|XP_002872605.1| signal-responsive protein [Arabidopsis lyrata subsp. lyrata] gi|297318442|gb|EFH48864.1| signal-responsive protein [Arabidopsis lyrata subsp. lyrata]

 Score =  528 bits (1360), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/328 (79%), Positives = 301/328 (91%)

Query: 1   MEANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKF 60
           MEAN EKYAA+ SSIKEA +RI  +IH+TPVL+SE+LN +SGRSLFFKCECFQKGGAFKF
Sbjct: 1   MEANREKYAADISSIKEAHERIKPFIHRTPVLTSESLNLISGRSLFFKCECFQKGGAFKF 60

Query: 61  RGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR 120
           RGA NAVLSLD +QA KGVVTHSSGNHAAALSLAAKL+GIPAYIV+PK APKCKV+NV+R
Sbjct: 61  RGACNAVLSLDAEQAAKGVVTHSSGNHAAALSLAAKLQGIPAYIVVPKGAPKCKVDNVIR 120

Query: 121 YGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTI 180
           YGG+VIWSE+TM SRE+VA+KVL+ETG+VL+HPYN+GRIISGQGTI+LE LEQ+  +D I
Sbjct: 121 YGGKVIWSESTMSSRETVAAKVLQETGSVLIHPYNNGRIISGQGTIALELLEQIQEIDAI 180

Query: 181 IVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR 240
           +VPISGGGLISGVALAAKSIKP+IRI+AAEP GA+DAA+SK AG+IITL  TNT+ADGLR
Sbjct: 181 VVPISGGGLISGVALAAKSIKPSIRIIAAEPKGADDAAKSKVAGKIITLPVTNTIADGLR 240

Query: 241 AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN 300
           A LGDLTWP+VRDLVDDVIT+ED EIIEAM++CYEILKV+VEPSGAIGLAAVLS+ FR N
Sbjct: 241 ASLGDLTWPVVRDLVDDVITLEDCEIIEAMRMCYEILKVSVEPSGAIGLAAVLSNSFRNN 300

Query: 301 PAWQDSKKIGIVLSGGNVDLGVLWDSFR 328
            +W+D K IGIVLSGGNVDLG LWDSF+
Sbjct: 301 QSWRDCKNIGIVLSGGNVDLGSLWDSFK 328

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145340114|ref|NP_192901.2| serine racemase [Arabidopsis thaliana] gi|122202369|sp|Q2PGG3.1|SRR_ARATH RecName: Full=Serine racemase; Short=AtSR; AltName: Full=D-serine ammonia-lyase; AltName: Full=D-serine dehydratase; AltName: Full=L-serine ammonia-lyase; AltName: Full=L-serine dehydratase gi|84458483|dbj|BAE72067.1| serine racemase [Arabidopsis thaliana] gi|332657632|gb|AEE83032.1| serine racemase [Arabidopsis thaliana]

 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 263/328 (80%), Positives = 298/328 (90%)

Query: 1   MEANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKF 60
           MEAN EKYAA+  SIKEA  RI  YIH+TPVL+SE+LNS+SGRSLFFKCEC QKGGAFKF
Sbjct: 1   MEANREKYAADILSIKEAHDRIKPYIHRTPVLTSESLNSISGRSLFFKCECLQKGGAFKF 60

Query: 61  RGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR 120
           RGA NAVLSLD +QA KGVVTHSSGNHAAALSLAAK++GIPAYIV+PK APKCKV+NV+R
Sbjct: 61  RGACNAVLSLDAEQAAKGVVTHSSGNHAAALSLAAKIQGIPAYIVVPKGAPKCKVDNVIR 120

Query: 121 YGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTI 180
           YGG+VIWSEATM SRE +ASKVL+ETG+VL+HPYNDGRIISGQGTI+LE LEQ+  +D I
Sbjct: 121 YGGKVIWSEATMSSREEIASKVLQETGSVLIHPYNDGRIISGQGTIALELLEQIQEIDAI 180

Query: 181 IVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR 240
           +VPISGGGLISGVALAAKSIKP+IRI+AAEP GA+DAAQSK AG+IITL  TNT+ADGLR
Sbjct: 181 VVPISGGGLISGVALAAKSIKPSIRIIAAEPKGADDAAQSKVAGKIITLPVTNTIADGLR 240

Query: 241 AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN 300
           A LGDLTWP+VRDLVDDV+T+E+ EIIEAMK+CYEILKV+VEPSGAIGLAAVLS+ FR N
Sbjct: 241 ASLGDLTWPVVRDLVDDVVTLEECEIIEAMKMCYEILKVSVEPSGAIGLAAVLSNSFRNN 300

Query: 301 PAWQDSKKIGIVLSGGNVDLGVLWDSFR 328
           P+ +D K IGIVLSGGNVDLG LWDSF+
Sbjct: 301 PSCRDCKNIGIVLSGGNVDLGSLWDSFK 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449495833|ref|XP_004159958.1| PREDICTED: serine racemase-like [Cucumis sativus]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 253/324 (78%), Positives = 296/324 (91%)

Query: 6   EKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASN 65
           ++YAA+ SSIKEA+ RI  +IH+TPV SSET+N+ SG+ LFFKCECFQKGGAFKFRGA N
Sbjct: 10  KEYAADISSIKEARIRIRPFIHQTPVFSSETINAASGKQLFFKCECFQKGGAFKFRGACN 69

Query: 66  AVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV 125
           A+ SLDE +A KGVVTHSSGNHAAALSLAAKLRGIPAYIVIP+NAPKCKVENV+RYGGQ+
Sbjct: 70  AIYSLDEGEAAKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPENAPKCKVENVIRYGGQI 129

Query: 126 IWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPIS 185
           IWS++ + SRESVA++V++ETGA+L+HPYNDGRIISGQGTISLE LEQVP LDT+IVPIS
Sbjct: 130 IWSKSAIQSRESVAARVMQETGALLIHPYNDGRIISGQGTISLELLEQVPQLDTLIVPIS 189

Query: 186 GGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD 245
           GGGLISG+++AAK+I PAIRI AAEP GANDAA SKAAG+I+TL ET T+ADGLRAFLG+
Sbjct: 190 GGGLISGISVAAKAINPAIRIFAAEPKGANDAAMSKAAGKIVTLPETTTIADGLRAFLGN 249

Query: 246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQD 305
           LTWPIVRDLVDDVITVED EI+EAM+LC EILKV VEPSGAIGLAAVLSD F++NP+W+D
Sbjct: 250 LTWPIVRDLVDDVITVEDTEIVEAMRLCLEILKVVVEPSGAIGLAAVLSDSFKQNPSWKD 309

Query: 306 SKKIGIVLSGGNVDLGVLWDSFRK 329
              IGI+LSGGNVDLG+LW+S++K
Sbjct: 310 CNSIGIILSGGNVDLGMLWNSYKK 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520483|ref|XP_003630530.1| Serine racemase [Medicago truncatula] gi|355524552|gb|AET05006.1| Serine racemase [Medicago truncatula]

 Score =  516 bits (1330), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 253/323 (78%), Positives = 285/323 (88%)

Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
           +YAA+ SSI EA  RI   I KTPVLSS +LN++SGR L+FKCE FQKGGAFKFRGA NA
Sbjct: 11  RYAADISSINEAHARIKSLILKTPVLSSTSLNAISGRQLYFKCESFQKGGAFKFRGACNA 70

Query: 67  VLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126
           V SL+++ A KGV+THSSGNHAAAL+LAAKLRGIPAYIVIPKNAP CK+ENV RYGGQVI
Sbjct: 71  VFSLNDEDASKGVITHSSGNHAAALALAAKLRGIPAYIVIPKNAPTCKIENVKRYGGQVI 130

Query: 127 WSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISG 186
           WSEA M SRE  A+KV +ETGA+ +HPYNDGRI+SGQGTISLE LEQ P LDT++VPISG
Sbjct: 131 WSEANMRSREETANKVWQETGAIFIHPYNDGRILSGQGTISLELLEQAPQLDTLVVPISG 190

Query: 187 GGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDL 246
           GGLISGVALAAKSI PAIRILAAEP GA+DAAQSKAAGRIITL ETNT+ADGLRAFLGD 
Sbjct: 191 GGLISGVALAAKSINPAIRILAAEPKGADDAAQSKAAGRIITLPETNTIADGLRAFLGDF 250

Query: 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDS 306
           TWP+VRDLVDD+ITVED EI++AM+LCYEILK+ VEPSGAIGLAAVLS+ F+KNPAW+D 
Sbjct: 251 TWPVVRDLVDDIITVEDSEIVKAMQLCYEILKIVVEPSGAIGLAAVLSESFQKNPAWKDC 310

Query: 307 KKIGIVLSGGNVDLGVLWDSFRK 329
           K IGIV+SGGNVD+ VLWDS  K
Sbjct: 311 KHIGIVVSGGNVDMAVLWDSLNK 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4539455|emb|CAB39935.1| putative protein [Arabidopsis thaliana] gi|7267864|emb|CAB78207.1| putative protein [Arabidopsis thaliana]

 Score =  514 bits (1325), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 263/343 (76%), Positives = 298/343 (86%), Gaps = 15/343 (4%)

Query: 1   MEANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKG----- 55
           MEAN EKYAA+  SIKEA  RI  YIH+TPVL+SE+LNS+SGRSLFFKCEC QKG     
Sbjct: 1   MEANREKYAADILSIKEAHDRIKPYIHRTPVLTSESLNSISGRSLFFKCECLQKGIECRS 60

Query: 56  ----------GAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIV 105
                     GAFKFRGA NAVLSLD +QA KGVVTHSSGNHAAALSLAAK++GIPAYIV
Sbjct: 61  FYFSVYCGKSGAFKFRGACNAVLSLDAEQAAKGVVTHSSGNHAAALSLAAKIQGIPAYIV 120

Query: 106 IPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGT 165
           +PK APKCKV+NV+RYGG+VIWSEATM SRE +ASKVL+ETG+VL+HPYNDGRIISGQGT
Sbjct: 121 VPKGAPKCKVDNVIRYGGKVIWSEATMSSREEIASKVLQETGSVLIHPYNDGRIISGQGT 180

Query: 166 ISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGR 225
           I+LE LEQ+  +D I+VPISGGGLISGVALAAKSIKP+IRI+AAEP GA+DAAQSK AG+
Sbjct: 181 IALELLEQIQEIDAIVVPISGGGLISGVALAAKSIKPSIRIIAAEPKGADDAAQSKVAGK 240

Query: 226 IITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSG 285
           IITL  TNT+ADGLRA LGDLTWP+VRDLVDDV+T+E+ EIIEAMK+CYEILKV+VEPSG
Sbjct: 241 IITLPVTNTIADGLRASLGDLTWPVVRDLVDDVVTLEECEIIEAMKMCYEILKVSVEPSG 300

Query: 286 AIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR 328
           AIGLAAVLS+ FR NP+ +D K IGIVLSGGNVDLG LWDSF+
Sbjct: 301 AIGLAAVLSNSFRNNPSCRDCKNIGIVLSGGNVDLGSLWDSFK 343

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518763|gb|AFK47443.1| unknown [Medicago truncatula]

 Score =  514 bits (1324), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 252/323 (78%), Positives = 284/323 (87%)

Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
           +YAA+ SSI EA  RI   I KTPVLSS +LN++SGR L+FKCE FQKGGAFKFRGA NA
Sbjct: 11  RYAADISSINEAHARIKSLILKTPVLSSTSLNAISGRQLYFKCESFQKGGAFKFRGACNA 70

Query: 67  VLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126
           V SL+++ A KGV+THSSGNHAAAL+LAAKLRGIPAYIVIPKNAP CK+ENV RYGGQVI
Sbjct: 71  VFSLNDEDASKGVITHSSGNHAAALALAAKLRGIPAYIVIPKNAPTCKIENVKRYGGQVI 130

Query: 127 WSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISG 186
           WSEA M SRE  A+KV +ETGA+ +HPYNDGRI+SGQGTISLE LEQ P LDT++VPISG
Sbjct: 131 WSEANMRSREETANKVWQETGAIFIHPYNDGRILSGQGTISLELLEQAPQLDTLVVPISG 190

Query: 187 GGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDL 246
           GGLISGVALAAKSI PAIRILAAEP GA+DAAQ KAAGRIITL ETNT+ADGLRAFLGD 
Sbjct: 191 GGLISGVALAAKSINPAIRILAAEPKGADDAAQFKAAGRIITLPETNTIADGLRAFLGDF 250

Query: 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDS 306
           TWP+VRDLVDD+ITVED EI++AM+LCYEILK+ VEPSGAIGLAAVLS+ F+KNPAW+D 
Sbjct: 251 TWPVVRDLVDDIITVEDSEIVKAMQLCYEILKIVVEPSGAIGLAAVLSESFQKNPAWKDC 310

Query: 307 KKIGIVLSGGNVDLGVLWDSFRK 329
           K IGIV+SGGNVD+ VLWDS  K
Sbjct: 311 KHIGIVVSGGNVDMAVLWDSLNK 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513403|ref|XP_003525403.1| PREDICTED: probable serine racemase-like [Glycine max]

 Score =  513 bits (1322), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 248/323 (76%), Positives = 286/323 (88%)

Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
           KYAA+ SSIKEA  RI   +HKTP+LSS +LN+MSGR L+FKCEC QKGGAFKFRGA NA
Sbjct: 11  KYAADISSIKEAHARIKSLVHKTPLLSSSSLNAMSGRKLYFKCECLQKGGAFKFRGACNA 70

Query: 67  VLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126
           V SL+++ A KGVVTHSSGNHAAAL+LAAKLRGIP+YIVIPKNAP CK+ENV RYGGQV+
Sbjct: 71  VFSLNDEDASKGVVTHSSGNHAAALALAAKLRGIPSYIVIPKNAPTCKIENVKRYGGQVV 130

Query: 127 WSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISG 186
           WSEA++ SRE +A+KV +E+GA+ +HPYNDGRI+SGQGTISLE LEQ P +DT++VPISG
Sbjct: 131 WSEASVQSREEIANKVWQESGAIFIHPYNDGRILSGQGTISLEILEQAPQIDTLVVPISG 190

Query: 187 GGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDL 246
           GGLISG+ALAAKSI PAIRI AAEP GA+DAAQSKAAGRII L ETNT+ADGLRAFLGD 
Sbjct: 191 GGLISGIALAAKSINPAIRIFAAEPKGADDAAQSKAAGRIIRLPETNTIADGLRAFLGDF 250

Query: 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDS 306
           TWP+VRDLV+++ITVED EII+AMKLC+EILKV VEPSGAIGLAAVLSD F+KNPAW+D 
Sbjct: 251 TWPVVRDLVEEIITVEDSEIIKAMKLCFEILKVVVEPSGAIGLAAVLSDTFQKNPAWKDC 310

Query: 307 KKIGIVLSGGNVDLGVLWDSFRK 329
             IGIV+SGGNVDL +LWDS  K
Sbjct: 311 NHIGIVVSGGNVDLAMLWDSLNK 333

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073856|gb|ACJ85288.1| unknown [Medicago truncatula]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 250/323 (77%), Positives = 282/323 (87%)

Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
           +YAA+ SSI EA  RI   I KTPVLSS +LN++SGR L+FKCE FQKGGAFKFRGA NA
Sbjct: 11  RYAADISSINEAHARIKSLILKTPVLSSTSLNAISGRQLYFKCESFQKGGAFKFRGACNA 70

Query: 67  VLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI 126
           V SL+++ A KGV+THSSGNHAAAL+LAAKLRGIPAYIVIPKNAP CK+ENV RYGGQVI
Sbjct: 71  VFSLNDEDASKGVITHSSGNHAAALALAAKLRGIPAYIVIPKNAPTCKIENVKRYGGQVI 130

Query: 127 WSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISG 186
           WSEA M SRE  A+KV +ETGA+ +HPYNDGRI+SGQGTISLE LEQ P LDT++VPISG
Sbjct: 131 WSEANMRSREETANKVWQETGAIFIHPYNDGRILSGQGTISLELLEQAPQLDTLVVPISG 190

Query: 187 GGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDL 246
           GGLISGVALAAK I PAIRILAAEP GA+DAAQ KAAGRIITL ETNT+ADGLRAFLGD 
Sbjct: 191 GGLISGVALAAKFINPAIRILAAEPKGADDAAQFKAAGRIITLPETNTIADGLRAFLGDF 250

Query: 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDS 306
           TWP+VRDLVDD+ITVED EI++AM+LCYEI K+ VEPSGAIGLAAVLS+ F+KNPAW+D 
Sbjct: 251 TWPVVRDLVDDIITVEDSEIVKAMQLCYEIFKIVVEPSGAIGLAAVLSESFQKNPAWKDC 310

Query: 307 KKIGIVLSGGNVDLGVLWDSFRK 329
           K IGIV+SGGNVD+ VLWDS  K
Sbjct: 311 KHIGIVVSGGNVDMAVLWDSLNK 333

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:2139767	331	SR "AT4G11640" [Arabidopsis th	0.996	0.990	0.801	7.2e-139
UNIPROTKB|Q7XSN8	339	SERR "Serine racemase" [Oryza	0.993	0.964	0.721	5.9e-128
UNIPROTKB|Q9GZT4	340	SRR "Serine racemase" [Homo sa	0.957	0.926	0.492	9.7e-80
RGD|735094	333	Srr "serine racemase" [Rattus	0.957	0.945	0.493	9.7e-80
UNIPROTKB|A0JNI4	334	SRR "Serine racemase" [Bos tau	0.963	0.949	0.466	2e-79
UNIPROTKB|E2QZ26	339	SRR "Uncharacterized protein"	0.954	0.926	0.48	6.8e-79
DICTYBASE|DDB_G0289463	324	srr "serine racemase" [Dictyos	0.920	0.935	0.5	4.8e-78
MGI|MGI:1351636	339	Srr "serine racemase" [Mus mus	0.957	0.929	0.478	3.4e-77
TIGR_CMR|CPS_4888	325	CPS_4888 "putative threonine d	0.939	0.950	0.492	4e-74
TIGR_CMR|SPO_A0145	317	SPO_A0145 "pyridoxal-phosphate	0.948	0.984	0.481	2.5e-72

TAIR|locus:2139767 SR "AT4G11640" [Arabidopsis thaliana (taxid:3702)]

 Score = 1359 (483.5 bits), Expect = 7.2e-139, P = 7.2e-139
 Identities = 263/328 (80%), Positives = 298/328 (90%)

Query:     1 MEANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKF 60
             MEAN EKYAA+  SIKEA  RI  YIH+TPVL+SE+LNS+SGRSLFFKCEC QKGGAFKF
Sbjct:     1 MEANREKYAADILSIKEAHDRIKPYIHRTPVLTSESLNSISGRSLFFKCECLQKGGAFKF 60

Query:    61 RGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR 120
             RGA NAVLSLD +QA KGVVTHSSGNHAAALSLAAK++GIPAYIV+PK APKCKV+NV+R
Sbjct:    61 RGACNAVLSLDAEQAAKGVVTHSSGNHAAALSLAAKIQGIPAYIVVPKGAPKCKVDNVIR 120

Query:   121 YGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTI 180
             YGG+VIWSEATM SRE +ASKVL+ETG+VL+HPYNDGRIISGQGTI+LE LEQ+  +D I
Sbjct:   121 YGGKVIWSEATMSSREEIASKVLQETGSVLIHPYNDGRIISGQGTIALELLEQIQEIDAI 180

Query:   181 IVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR 240
             +VPISGGGLISGVALAAKSIKP+IRI+AAEP GA+DAAQSK AG+IITL  TNT+ADGLR
Sbjct:   181 VVPISGGGLISGVALAAKSIKPSIRIIAAEPKGADDAAQSKVAGKIITLPVTNTIADGLR 240

Query:   241 AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN 300
             A LGDLTWP+VRDLVDDV+T+E+ EIIEAMK+CYEILKV+VEPSGAIGLAAVLS+ FR N
Sbjct:   241 ASLGDLTWPVVRDLVDDVVTLEECEIIEAMKMCYEILKVSVEPSGAIGLAAVLSNSFRNN 300

Query:   301 PAWQDSKKIGIVLSGGNVDLGVLWDSFR 328
             P+ +D K IGIVLSGGNVDLG LWDSF+
Sbjct:   301 PSCRDCKNIGIVLSGGNVDLGSLWDSFK 328

GO:0009069 "serine family amino acid metabolic process" evidence=ISS;IDA

GO:0030378 "serine racemase activity" evidence=ISS;IDA

GO:0003941 "L-serine ammonia-lyase activity" evidence=IDA

GO:0006563 "L-serine metabolic process" evidence=IDA

GO:0008721 "D-serine ammonia-lyase activity" evidence=IDA

GO:0070178 "D-serine metabolic process" evidence=IDA

UNIPROTKB|Q7XSN8 SERR "Serine racemase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1256 (447.2 bits), Expect = 5.9e-128, P = 5.9e-128
 Identities = 236/327 (72%), Positives = 286/327 (87%)

Query:     3 ANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRG 62
             A    YAA+  SI+EAQ RI+ Y+HKTPVLSS +++++ G+ LFFKCECFQK GAFK RG
Sbjct:    12 AESHGYAADIHSIREAQARIAPYVHKTPVLSSTSIDAIVGKQLFFKCECFQKAGAFKIRG 71

Query:    63 ASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYG 122
             ASN++ +LD+D+A KGVVTHSSGNHAAA++LAAKLRGIPAYIVIP+NAP CKV+NV RYG
Sbjct:    72 ASNSIFALDDDEASKGVVTHSSGNHAAAVALAAKLRGIPAYIVIPRNAPACKVDNVKRYG 131

Query:   123 GQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIV 182
             G +IWS+ ++ SRESVA +V EETGA+LVHP+N+   ISGQGT+SLE LE+VP +DTIIV
Sbjct:   132 GHIIWSDVSIESRESVAKRVQEETGAILVHPFNNKNTISGQGTVSLELLEEVPEIDTIIV 191

Query:   183 PISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF 242
             PISGGGLISGVALAAK+I P+IRILAAEP GA+D+AQSKAAG+IITL  TNT+ADGLRAF
Sbjct:   192 PISGGGLISGVALAAKAINPSIRILAAEPKGADDSAQSKAAGKIITLPSTNTIADGLRAF 251

Query:   243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
             LGDLTWP+VRDLVDD+I V+D  I++AMK+CYE+LKVAVEPSGAIGLAA LSD F+++ A
Sbjct:   252 LGDLTWPVVRDLVDDIIVVDDNAIVDAMKMCYEMLKVAVEPSGAIGLAAALSDEFKQSSA 311

Query:   303 WQDSKKIGIVLSGGNVDLGVLWDSFRK 329
             W +S KIGI++SGGNVDLGVLW+S  K
Sbjct:   312 WHESSKIGIIVSGGNVDLGVLWESLYK 338

GO:0003941 "L-serine ammonia-lyase activity" evidence=IDA

GO:0006563 "L-serine metabolic process" evidence=IDA

GO:0008721 "D-serine ammonia-lyase activity" evidence=IDA

GO:0043621 "protein self-association" evidence=IDA

GO:0070178 "D-serine metabolic process" evidence=IDA

UNIPROTKB|Q9GZT4 SRR "Serine racemase" [Homo sapiens (taxid:9606)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 160/325 (49%), Positives = 227/325 (69%)

Query:     7 KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
             +Y  +F+ +++A   I   IH TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct:     4 QYCISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNA 63

Query:    67 VLSLDED---QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
             V SL  D   +  K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG 
Sbjct:    64 VRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGA 123

Query:   124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
              +++ E +  SRE+VA +V EET  ++VHP  +  +I+GQGTI+LE L QVPL+D ++VP
Sbjct:   124 SIVYCEPSDESRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183

Query:   184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRAF 242
             + GGG+++G+A+  K++KP++++ AAEP  A+D  QSK  G+++  L    T+ADG+++ 
Sbjct:   184 VGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS 243

Query:   243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK-NP 301
             +G  TWPI+RDLVDD+ TV + EI  A +L +E +K+ +EP+  +G+AAVLS  F+  +P
Sbjct:   244 IGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVSP 303

Query:   302 AWQDSKKIGIVLSGGNVDL--GVLW 324
                + K I IVLSGGNVDL   + W
Sbjct:   304 ---EVKNICIVLSGGNVDLTSSITW 325

GO:0008721 "D-serine ammonia-lyase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0007568 "aging" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0043278 "response to morphine" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0070179 "D-serine biosynthetic process" evidence=IDA

GO:0030378 "serine racemase activity" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=IPI

GO:0043025 "neuronal cell body" evidence=IDA

GO:0006563 "L-serine metabolic process" evidence=IDA

GO:0009069 "serine family amino acid metabolic process" evidence=ISS

GO:0051289 "protein homotetramerization" evidence=ISS

GO:0005509 "calcium ion binding" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS;IDA

GO:0016594 "glycine binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0032496 "response to lipopolysaccharide" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IDA;IPI

GO:0030170 "pyridoxal phosphate binding" evidence=ISS;IDA

GO:0000287 "magnesium ion binding" evidence=IDA

GO:0070178 "D-serine metabolic process" evidence=IDA

GO:0018114 "threonine racemase activity" evidence=ISS

GO:0003941 "L-serine ammonia-lyase activity" evidence=IDA

GO:0042866 "pyruvate biosynthetic process" evidence=IDA

RGD|735094 Srr "serine racemase" [Rattus norvegicus (taxid:10116)]

 Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
 Identities = 160/324 (49%), Positives = 225/324 (69%)

Query:     7 KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
             +Y  +F+ +++A   I   +H TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct:     4 QYCISFADVEKAHLNIQDSVHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNA 63

Query:    67 VLSLDEDQAI---KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
             +  L  D      K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG 
Sbjct:    64 IRGLIPDTLEGKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGA 123

Query:   124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
              +++SE +  SRE+VA ++++ET  +LVHP  +  +I+GQGTI+LE L QVPL+D ++VP
Sbjct:   124 SIVYSEPSDESRENVAQRIIQETEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183

Query:   184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET-NTVADGLRAF 242
             + GGG+++G+A+  K++KP++++ AAEP  A+D  QSK  G +   L    T+ADG+++ 
Sbjct:   184 VGGGGMVAGIAITIKTLKPSVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGVKSS 243

Query:   243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK-NP 301
             +G  TWPI+RDLVDDV TV + EI  A +L +E +K+ +EP+  +GLAAVLS  F+  +P
Sbjct:   244 IGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWERMKLLIEPTAGVGLAAVLSQHFQTVSP 303

Query:   302 AWQDSKKIGIVLSGGNVDLGVL-W 324
                + K I IVLSGGNVDL  L W
Sbjct:   304 ---EVKNICIVLSGGNVDLTSLSW 324

GO:0000287 "magnesium ion binding" evidence=ISO;IDA

GO:0003941 "L-serine ammonia-lyase activity" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0006563 "L-serine metabolic process" evidence=ISO;IDA

GO:0007420 "brain development" evidence=IEP

GO:0007568 "aging" evidence=IEP

GO:0008721 "D-serine ammonia-lyase activity" evidence=IEA

GO:0009069 "serine family amino acid metabolic process" evidence=ISO

GO:0014070 "response to organic cyclic compound" evidence=IEP

GO:0016594 "glycine binding" evidence=IEA;ISO

GO:0018114 "threonine racemase activity" evidence=IEA;ISO

GO:0030165 "PDZ domain binding" evidence=IEA;ISO

GO:0030170 "pyridoxal phosphate binding" evidence=IEA;ISO;IDA

GO:0030378 "serine racemase activity" evidence=ISO;IDA

GO:0032496 "response to lipopolysaccharide" evidence=IEA;ISO

GO:0042493 "response to drug" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=ISO;IPI

GO:0042866 "pyruvate biosynthetic process" evidence=IEA;ISO

GO:0043025 "neuronal cell body" evidence=IEA;ISO

GO:0043278 "response to morphine" evidence=IEP

GO:0045177 "apical part of cell" evidence=IDA

GO:0051289 "protein homotetramerization" evidence=IEA;ISO

GO:0070178 "D-serine metabolic process" evidence=ISO;IDA

GO:0070179 "D-serine biosynthetic process" evidence=IEA;ISO

UNIPROTKB|A0JNI4 SRR "Serine racemase" [Bos taurus (taxid:9913)]

 Score = 798 (286.0 bits), Expect = 2.0e-79, P = 2.0e-79
 Identities = 151/324 (46%), Positives = 225/324 (69%)

Query:     6 EKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASN 65
             ++Y  +F+ +++A   I  +IH TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA N
Sbjct:     3 DQYCISFADVEKAHINIRDFIHLTPVLTSSILNQITGRNLFFKCELFQKTGSFKIRGALN 62

Query:    66 AV---LSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYG 122
             A+   +S   ++  + VV HSSGNH  ALS AA+L GIPAY+++P+ AP CK   +  YG
Sbjct:    63 AIRGLISAHPEEKPRAVVAHSSGNHGQALSFAARLEGIPAYVIVPETAPNCKKLAIQAYG 122

Query:   123 GQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIV 182
               +++SE +  SRE++  ++ EET  ++VHP  +  +I+GQGTI++E L QVPL+D ++V
Sbjct:   123 ASIVYSEQSEESRENITKRIAEETEGIMVHPNQEPAVIAGQGTIAMEVLNQVPLVDALVV 182

Query:   183 PISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRA 241
             P+ GGG+++G+A+  K+++P++++ AAEP+ A+D  QSK  G +        T+ADG+++
Sbjct:   183 PVGGGGMLAGIAVTVKALRPSVKVYAAEPLNADDCYQSKLKGELTPNPYPPETIADGIKS 242

Query:   242 FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNP 301
              +G  TWPI+RDLVDDV TV + EI  A +L +E +K+ +EP+  +G+A VLS  FR  P
Sbjct:   243 SIGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWERMKLLIEPTAGVGVAVVLSQHFRTVP 302

Query:   302 AWQDSKKIGIVLSGGNVDLGVL-W 324
             A  + K I IVLSGGNVDL  L W
Sbjct:   303 A--EVKNICIVLSGGNVDLTSLTW 324

GO:0070178 "D-serine metabolic process" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=ISS

GO:0030378 "serine racemase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0006563 "L-serine metabolic process" evidence=ISS

GO:0070179 "D-serine biosynthetic process" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IEA

GO:0042866 "pyruvate biosynthetic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0032496 "response to lipopolysaccharide" evidence=IEA

GO:0030165 "PDZ domain binding" evidence=IEA

GO:0018114 "threonine racemase activity" evidence=IEA

GO:0016594 "glycine binding" evidence=IEA

GO:0005509 "calcium ion binding" evidence=IEA

GO:0008721 "D-serine ammonia-lyase activity" evidence=IEA

GO:0003941 "L-serine ammonia-lyase activity" evidence=IEA

UNIPROTKB|E2QZ26 SRR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 156/325 (48%), Positives = 227/325 (69%)

Query:     7 KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
             +Y  +F+ +++A   I  +IH TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct:     4 QYCISFADVEKAHVNIQDFIHLTPVLTSFILNQVTGRNLFFKCELFQKTGSFKIRGAINA 63

Query:    67 VLSL----DEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYG 122
             +  L     ED+  K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG
Sbjct:    64 IKGLTPATSEDKP-KAVVTHSSGNHGQALAYAAKLEGIPAYIVVPQTAPNCKKLAIQAYG 122

Query:   123 GQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIV 182
               +++SE    SRE++  +++EET  ++VHP  +  +I+GQGTI++E L QVPL+D ++V
Sbjct:   123 ASIVYSEQNDESRENLTRRIMEETEGIMVHPNQEPAVIAGQGTIAMEVLNQVPLVDALVV 182

Query:   183 PISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRA 241
             P+ GGG+++G+A+  K+++P++++ AAEP+ A+D  QSK  G +        T+ADG+++
Sbjct:   183 PVGGGGMVAGIAITVKALRPSVKVYAAEPLNADDCYQSKLKGELTPNPYPPETIADGVKS 242

Query:   242 FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK-N 300
              +G  TWPI+RDLVDDV TV ++EI  A +L +E +K+ +EP+  +G+AAVLS  F+  +
Sbjct:   243 SIGLNTWPIIRDLVDDVFTVTEEEIKYATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVS 302

Query:   301 PAWQDSKKIGIVLSGGNVDLGVL-W 324
             P   + K I IVLSGGNVDL  L W
Sbjct:   303 P---EVKNICIVLSGGNVDLTSLTW 324

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

DICTYBASE|DDB_G0289463 srr "serine racemase" [Dictyostelium discoideum (taxid:44689)]

 Score = 785 (281.4 bits), Expect = 4.8e-78, P = 4.8e-78
 Identities = 154/308 (50%), Positives = 217/308 (70%)

Query:    15 IKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ 74
             IKEA KRI  YIHKTPVL++ T+N ++G+ L+FKCE  QK G+FK RGA NA+ SLDE++
Sbjct:    12 IKEAHKRIEKYIHKTPVLTNSTINELAGKELYFKCENLQKTGSFKMRGACNAIFSLDEEE 71

Query:    75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHS 134
               KGVVTHSSGNH  ALS A+K+R +  Y+V+P++AP  K+  +  YG  V   +AT+ +
Sbjct:    72 LSKGVVTHSSGNHGQALSYASKVRCVKCYVVVPEDAPSVKLNAICGYGATVTKCKATLEA 131

Query:   135 RESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVA 194
             RES   +++E+    L+HP+++ ++I+GQGT SLE +EQV  LD II P+ GGGL+SG  
Sbjct:   132 RESNTKQLIEQHSCKLIHPFDNLQVIAGQGTASLELMEQVENLDAIITPVGGGGLLSGTC 191

Query:   195 LAAKSIKPAIRILAAEPIGANDAAQSKAAGRII--TLLETNTVADGLRAFLGDLTWPIVR 252
             + AKS+ P I++ AAEP+GA+D  +S  +G I   T  + NT+ADGL   +G LT+PI++
Sbjct:   192 ITAKSLNPNIKVFAAEPLGADDTYRSLLSGEIQKHTPGKPNTIADGLLTTVGSLTFPIIK 251

Query:   253 DLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIV 312
             +  D VI V + EI  AMKL +E +K+ +EPS A  LAA+L   F+     +D KK+GI+
Sbjct:   252 ENCDGVILVTEDEIKYAMKLVWERMKIIIEPSSATTLAAILKQEFKDK---KDIKKVGII 308

Query:   313 LSGGNVDL 320
             +SGGNVDL
Sbjct:   309 ISGGNVDL 316

GO:0008721 "D-serine ammonia-lyase activity" evidence=IEA

GO:0003941 "L-serine ammonia-lyase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0070179 "D-serine biosynthetic process" evidence=IDA

GO:0030378 "serine racemase activity" evidence=IDA

GO:0018249 "protein dehydration" evidence=IDA

GO:0006563 "L-serine metabolic process" evidence=IDA

GO:0000287 "magnesium ion binding" evidence=ISS

GO:0030170 "pyridoxal phosphate binding" evidence=IDA

MGI|MGI:1351636 Srr "serine racemase" [Mus musculus (taxid:10090)]

 Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
 Identities = 155/324 (47%), Positives = 221/324 (68%)

Query:     7 KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
             +Y  +F+ +++A   I   IH TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct:     4 QYCISFADVEKAHINIQDSIHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNA 63

Query:    67 VLSLDED---QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
             +  L  D   +  K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG 
Sbjct:    64 IRGLIPDTPEEKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGA 123

Query:   124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
              +++ + +  SRE V  ++++ET  +LVHP  +  +I+GQGTI+LE L QVPL+D ++VP
Sbjct:   124 SIVYCDPSDESREKVTQRIMQETEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183

Query:   184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET-NTVADGLRAF 242
             + GGG+++G+A+  K++KP++++ AAEP  A+D  QSK  G +   L    T+ADG+++ 
Sbjct:   184 VGGGGMVAGIAITIKALKPSVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGVKSS 243

Query:   243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK-NP 301
             +G  TWPI+RDLVDDV TV + EI  A +L +  +K+ +EP+  + LAAVLS  F+  +P
Sbjct:   244 IGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWGRMKLLIEPTAGVALAAVLSQHFQTVSP 303

Query:   302 AWQDSKKIGIVLSGGNVDLGVL-W 324
                + K + IVLSGGNVDL  L W
Sbjct:   304 ---EVKNVCIVLSGGNVDLTSLNW 324

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0003941 "L-serine ammonia-lyase activity" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0006563 "L-serine metabolic process" evidence=ISO;IDA

GO:0008152 "metabolic process" evidence=IEA

GO:0008721 "D-serine ammonia-lyase activity" evidence=IEA

GO:0009069 "serine family amino acid metabolic process" evidence=IDA

GO:0016594 "glycine binding" evidence=IDA

GO:0016829 "lyase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0018114 "threonine racemase activity" evidence=IDA

GO:0030165 "PDZ domain binding" evidence=ISO

GO:0030170 "pyridoxal phosphate binding" evidence=ISO;IMP

GO:0030378 "serine racemase activity" evidence=ISO;IDA

GO:0042803 "protein homodimerization activity" evidence=ISO;IDA

GO:0042866 "pyruvate biosynthetic process" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051289 "protein homotetramerization" evidence=IDA

GO:0070178 "D-serine metabolic process" evidence=ISO

GO:0070179 "D-serine biosynthetic process" evidence=ISO;IDA

TIGR_CMR|CPS_4888 CPS_4888 "putative threonine dehydratase, catabolic" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 155/315 (49%), Positives = 207/315 (65%)

Query:    11 NFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSL 70
             ++  +  A +RI  YIH+TPVL+S  LN ++G  LFFKCE  QK  AFK RGA NAV  L
Sbjct:    13 SYEDVLVAHERIKPYIHETPVLTSRFLNELTGAELFFKCENLQKAAAFKVRGACNAVFGL 72

Query:    71 DEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130
              + +A  GV THSSGNHA +LS AA  RGIP  +V+P+ AP+ K + V+ YGG ++  E 
Sbjct:    73 TDAEAKIGVATHSSGNHALSLSYAAGRRGIPVTVVMPRTAPQAKKDAVIGYGGVIVECEP 132

Query:   131 TMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLI 190
             +  SRE+V + V+ E+GA  VHPYND R+I+GQ T + E + QV  LD ++ PI GGG+I
Sbjct:   133 STSSREAVFADVVAESGADFVHPYNDPRVIAGQATCAKELVNQVLNLDAVVAPIGGGGMI 192

Query:   191 SGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPI 250
             SG  L   +  P I+I AAEP+ A+DAA+S  AG II      TVADGL+  L DLTW  
Sbjct:   193 SGTCLTLSTTNPTIKIYAAEPLNADDAARSFKAGHIIADDAPETVADGLKVPLKDLTWHF 252

Query:   251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
             V++ V D++T  + EI+ AMKL +  +K+ VEPS A+ LA +L     KNP     K+IG
Sbjct:   253 VKNHVTDILTATEDEIVAAMKLIWIRMKIVVEPSSAVTLAIIL-----KNPEVFKGKRIG 307

Query:   311 IVLSGGNVDLGVL-W 324
             ++L+GGNVDL  L W
Sbjct:   308 VILTGGNVDLDKLPW 322

GO:0004794 "L-threonine ammonia-lyase activity" evidence=ISS

GO:0006567 "threonine catabolic process" evidence=ISS

TIGR_CMR|SPO_A0145 SPO_A0145 "pyridoxal-phosphate dependent enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
 Identities = 153/318 (48%), Positives = 205/318 (64%)

Query:     8 YAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAV 67
             Y   F  +  A  RI  +I +TPV  S+ LN ++G  LFFKCE FQ+ GAFK RGA+NAV
Sbjct:     2 YIPTFEDMLAAHARIEPHIRRTPVRVSDYLNELTGAQLFFKCENFQEPGAFKIRGATNAV 61

Query:    68 LSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW 127
               LD+ QA KGV THSSGNHA+ LS AA LRGIP  +V+P  AP+ K + V RYGG +  
Sbjct:    62 FGLDDAQAAKGVATHSSGNHASCLSYAAMLRGIPCNVVMPSTAPQAKKDTVRRYGGVITE 121

Query:   128 SEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGG 187
                +  +RE   ++V  +TG   VHPYND R+I+GQGT + E +EQ   LD ++ PI GG
Sbjct:   122 CAPSTSAREETFARVQAQTGGDFVHPYNDPRVIAGQGTCARELMEQTDGLDIVVAPIGGG 181

Query:   188 GLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLT 247
             G+ISG  L   ++ P  R++AAEP  A+DA +S  AG II      T+ADGL   L DLT
Sbjct:   182 GMISGTCLTLSTLAPETRVIAAEPEQADDAYRSFKAGHIIADDAPKTIADGLLVPLKDLT 241

Query:   248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSK 307
             W  V + V ++ T  ++EIIEAMKL ++ L+V +EPS A+ LA +L +  RK  A    K
Sbjct:   242 WHFVSNHVAEIYTASEQEIIEAMKLTWKHLRVVMEPSSAVPLATILKN--RKAFA---GK 296

Query:   308 KIGIVLSGGNVDLGVL-W 324
             ++G++++GGNVDL  L W
Sbjct:   297 RVGVIITGGNVDLDKLPW 314

GO:0003824 "catalytic activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q2PGG3	SRR_ARATH	5, ., 1, ., 1, ., 1, 8	0.8018	0.9969	0.9909	yes	no
Q54HH2	SRR_DICDI	5, ., 1, ., 1, ., 1, 8	0.4951	0.9300	0.9444	yes	no
Q9GZT4	SRR_HUMAN	5, ., 1, ., 1, ., 1, 8	0.4907	0.9604	0.9294	yes	no
O59791	SRR_SCHPO	5, ., 1, ., 1, ., 1, 8	0.4258	0.9240	0.9411	yes	no
Q6G9C4	TDCB_STAAS	4, ., 3, ., 1, ., 1, 9	0.3746	0.9452	0.8988	yes	no
Q9QZX7	SRR_MOUSE	5, ., 1, ., 1, ., 1, 8	0.4766	0.9574	0.9292	yes	no
Q2FYJ3	TDCB_STAA8	4, ., 3, ., 1, ., 1, 9	0.3746	0.9452	0.8988	yes	no
Q8NWQ4	TDCB_STAAW	4, ., 3, ., 1, ., 1, 9	0.3746	0.9452	0.8988	yes	no
P36007	SRY1_YEAST	4, ., 3, ., 1, ., 1, 6	0.4354	0.9240	0.9325	yes	no
A0JNI4	SRR_BOVIN	5, ., 1, ., 1, ., 1, 8	0.4658	0.9604	0.9461	yes	no
Q76EQ0	SRR_RAT	5, ., 1, ., 1, ., 1, 8	0.4922	0.9574	0.9459	yes	no
Q99U50	TDCB_STAAM	4, ., 3, ., 1, ., 1, 9	0.3682	0.9452	0.8988	yes	no
Q7A5L8	TDCB_STAAN	4, ., 3, ., 1, ., 1, 9	0.3682	0.9452	0.8988	yes	no
A2XWA9	SRR_ORYSI	5, ., 1, ., 1, ., 1, 8	0.7217	0.9939	0.9646	N/A	no
P11954	TDCB_SALTY	4, ., 3, ., 1, ., 1, 7	0.3941	0.9209	0.9209	yes	no
P0AGF9	TDCB_SHIFL	4, ., 3, ., 1, ., 1, 7	0.3908	0.9209	0.9209	yes	no
Q2YY67	TDCB_STAAB	4, ., 3, ., 1, ., 1, 9	0.3746	0.9452	0.8988	yes	no
P0AGF7	TDCB_ECOL6	4, ., 3, ., 1, ., 1, 7	0.3908	0.9209	0.9209	yes	no
Q5HFY5	TDCB_STAAC	4, ., 3, ., 1, ., 1, 9	0.3746	0.9452	0.8988	yes	no
Q7XSN8	SRR_ORYSJ	5, ., 1, ., 1, ., 1, 8	0.7217	0.9939	0.9646	yes	no
Q6GGX0	TDCB_STAAR	4, ., 3, ., 1, ., 1, 9	0.3746	0.9452	0.8988	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	5.1.1.18	0.914
3rd Layer	5.1.1	LOW CONFIDENCE prediction!
3rd Layer	4.3.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00000395001	SubName- Full=Chromosome chr2 scaffold_105, whole genome shotgun sequence; (333 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00022240001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (401 aa)	•					•	•		0.960
	GSVIVG00027369001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (458 aa)						•	•		0.935
	GSVIVG00006903001	SubName- Full=Chromosome chr10 scaffold_179, whole genome shotgun sequence; (407 aa)						•	•		0.931
	GSVIVG00032161001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (428 aa)						•	•		0.919
	GSVIVG00000550001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (476 aa)			•			•	•	•	0.912
	GSVIVG00015058001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (516 aa)						•	•		0.911
	GSVIVG00016203001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (294 aa)						•	•		0.906
	GSVIVG00020486001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (564 aa)	•						•		0.903
	GSVIVG00015300001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (570 aa)						•	•		0.901
	GSVIVG00026455001	RecName- Full=Serine hydroxymethyltransferase; EC=2.1.2.1;; Interconversion of serine and glyci [...] (563 aa)						•	•		0.900

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
PLN02970	328	PLN02970, PLN02970, serine racemase	0.0
cd01562	304	cd01562, Thr-dehyd, Threonine dehydratase: The fir	1e-139
COG1171	347	COG1171, IlvA, Threonine dehydratase [Amino acid t	1e-114
PRK08198	404	PRK08198, PRK08198, threonine dehydratase; Provisi	1e-112
PRK07048	321	PRK07048, PRK07048, serine/threonine dehydratase;	1e-110
TIGR01127	380	TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, m	1e-87
PRK08638	333	PRK08638, PRK08638, threonine dehydratase; Validat	2e-84
PRK06608	338	PRK06608, PRK06608, threonine dehydratase; Provisi	7e-80
PRK06382	406	PRK06382, PRK06382, threonine dehydratase; Provisi	3e-79
PRK07334	403	PRK07334, PRK07334, threonine dehydratase; Provisi	6e-79
PRK08526	403	PRK08526, PRK08526, threonine dehydratase; Provisi	3e-76
PRK06815	317	PRK06815, PRK06815, hypothetical protein; Provisio	6e-75
PRK07476	322	PRK07476, eutB, threonine dehydratase; Provisional	1e-72
PRK08246	310	PRK08246, PRK08246, threonine dehydratase; Provisi	5e-69
pfam00291	295	pfam00291, PALP, Pyridoxal-phosphate dependent enz	2e-65
TIGR01124	499	TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, b	5e-63
TIGR02991	317	TIGR02991, ectoine_eutB, ectoine utilization prote	3e-62
cd00640	244	cd00640, Trp-synth-beta_II, Tryptophan synthase be	3e-61
PRK09224	504	PRK09224, PRK09224, threonine dehydratase; Reviewe	1e-60
PRK12483	521	PRK12483, PRK12483, threonine dehydratase; Reviewe	3e-59
PRK08639	420	PRK08639, PRK08639, threonine dehydratase; Validat	4e-55
TIGR02079	409	TIGR02079, THD1, threonine dehydratase	2e-51
PLN02550	591	PLN02550, PLN02550, threonine dehydratase	1e-41
PRK08813	349	PRK08813, PRK08813, threonine dehydratase; Provisi	3e-39
PRK06110	322	PRK06110, PRK06110, hypothetical protein; Provisio	1e-36
cd06448	316	cd06448, L-Ser-dehyd, Serine dehydratase is a pyri	5e-31
cd01563	324	cd01563, Thr-synth_1, Threonine synthase is a pyri	1e-26
cd01561	291	cd01561, CBS_like, CBS_like: This subgroup include	3e-20
COG0498	411	COG0498, ThrC, Threonine synthase [Amino acid tran	1e-18
COG0031	300	COG0031, CysK, Cysteine synthase [Amino acid trans	4e-16
PRK08197	394	PRK08197, PRK08197, threonine synthase; Validated	4e-15
PRK05638	442	PRK05638, PRK05638, threonine synthase; Validated	8e-15
PRK08206	399	PRK08206, PRK08206, diaminopropionate ammonia-lyas	7e-14
PRK06450	338	PRK06450, PRK06450, threonine synthase; Validated	1e-13
PRK08329	347	PRK08329, PRK08329, threonine synthase; Validated	2e-13
PRK06352	351	PRK06352, PRK06352, threonine synthase; Validated	3e-13
TIGR00260	328	TIGR00260, thrC, threonine synthase	9e-13
TIGR01137	454	TIGR01137, cysta_beta, cystathionine beta-synthase	7e-12
PRK06721	352	PRK06721, PRK06721, threonine synthase; Reviewed	4e-11
TIGR01136	299	TIGR01136, cysKM, cysteine synthase	2e-09
PRK06381	319	PRK06381, PRK06381, threonine synthase; Validated	3e-09
TIGR03945	304	TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate bio	8e-09
TIGR01139	298	TIGR01139, cysK, cysteine synthase A	8e-09
PRK06260	397	PRK06260, PRK06260, threonine synthase; Validated	3e-08
TIGR01747	376	TIGR01747, diampropi_NH3ly, diaminopropionate ammo	5e-08
PRK07591	421	PRK07591, PRK07591, threonine synthase; Validated	4e-07
PLN02569	484	PLN02569, PLN02569, threonine synthase	5e-06
PRK10717	330	PRK10717, PRK10717, cysteine synthase A; Provision	6e-05
TIGR01138	290	TIGR01138, cysM, cysteine synthase B	8e-05
PLN02556	368	PLN02556, PLN02556, cysteine synthase/L-3-cyanoala	2e-04
TIGR03528	396	TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammoni	5e-04

>gnl|CDD|215524 PLN02970, PLN02970, serine racemase

 Score =  607 bits (1566), Expect = 0.0
 Identities = 256/328 (78%), Positives = 295/328 (89%)

Query: 2   EANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFR 61
           EA  EKYAA+ SSI+EA+KRI+ +IH+TPVL+S +L++++GRSLFFKCECFQKGGAFKFR
Sbjct: 1   EAASEKYAADLSSIREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFR 60

Query: 62  GASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRY 121
           GA NA+ SL +DQA KGVVTHSSGNHAAAL+LAAKLRGIPAYIV+PKNAP CKV+ V+RY
Sbjct: 61  GACNAIFSLSDDQAEKGVVTHSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRY 120

Query: 122 GGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTII 181
           GG + W E T+ SRE+VA++V +ETGAVL+HPYNDGR+ISGQGTI+LEFLEQVP LD II
Sbjct: 121 GGIITWCEPTVESREAVAARVQQETGAVLIHPYNDGRVISGQGTIALEFLEQVPELDVII 180

Query: 182 VPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA 241
           VPISGGGLISG+ALAAK+IKP+I+I+AAEP GA+DAAQSKAAG IITL  TNT+ADGLRA
Sbjct: 181 VPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRA 240

Query: 242 FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNP 301
            LGDLTWP+VRDLVDDVITV+DKEIIEAMKLCYE LKV VEPSGAIGLAA LSD FR NP
Sbjct: 241 SLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDSFRSNP 300

Query: 302 AWQDSKKIGIVLSGGNVDLGVLWDSFRK 329
           AW+  K +GIVLSGGNVDLGVLW+SF K
Sbjct: 301 AWKGCKNVGIVLSGGNVDLGVLWESFSK 328

Length = 328

>gnl|CDD|107205 cd01562, Thr-dehyd, Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

 Score =  394 bits (1016), Expect = e-139
 Identities = 144/309 (46%), Positives = 198/309 (64%), Gaps = 6/309 (1%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
              I  A  RI   + +TP+L+S TL+ + G  ++ KCE  QK G+FK RGA N +LSL 
Sbjct: 1   LEDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLS 60

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
           E++  KGVV  S+GNHA  ++ AAKL GIPA IV+P+ AP  KV+    YG +V+     
Sbjct: 61  EEERAKGVVAASAGNHAQGVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED 120

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
               E+ A ++ EE G   +HP++D  +I+GQGTI LE LEQVP LD + VP+ GGGLI+
Sbjct: 121 FDEAEAKARELAEEEGLTFIHPFDDPDVIAGQGTIGLEILEQVPDLDAVFVPVGGGGLIA 180

Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPI 250
           G+A A K++ P  +++  EP GA   AQS AAG+ +TL E +T+ADGL     G+LT+ I
Sbjct: 181 GIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEI 240

Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
           +R LVDDV+TV + EI  AM L +E  K+  EP+GA+ LAA+LS            KK+ 
Sbjct: 241 IRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSGKLD-----LKGKKVV 295

Query: 311 IVLSGGNVD 319
           +VLSGGN+D
Sbjct: 296 VVLSGGNID 304

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions. Length = 304

>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and metabolism]

 Score =  333 bits (855), Expect = e-114
 Identities = 128/313 (40%), Positives = 189/313 (60%), Gaps = 8/313 (2%)

Query: 15  IKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSL-DED 73
           I  A  R+   ++ TP+  S +L+   G  ++ K E  Q  G+FK RGA N + SL +E+
Sbjct: 12  ILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEE 71

Query: 74  QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMH 133
           +   GV+  S+GNHA  ++ AAK  GI A IV+P+  PK KV+    YG +VI       
Sbjct: 72  ERAAGVIAASAGNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNFD 131

Query: 134 SRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISG 192
              + A ++ EE G   V P++D  +I+GQGTI+LE LEQ+P L D + VP+ GGGLISG
Sbjct: 132 DAYAAAEELAEEEGLTFVPPFDDPDVIAGQGTIALEILEQLPDLPDAVFVPVGGGGLISG 191

Query: 193 VALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET-NTVADGLR-AFLGDLTWPI 250
           +A A K++ P I+++  EP GA     S  AG+I+ +L    T+ADGL     GDLT+ I
Sbjct: 192 IATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVKRPGDLTFEI 251

Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
           +R+LVDD++ V++ EI  AM+  +E  K+  EP+GA+ LAA+L+   +  P     K + 
Sbjct: 252 LRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLA--GKIEPL--QGKTVV 307

Query: 311 IVLSGGNVDLGVL 323
           ++LSGGN+D   L
Sbjct: 308 VILSGGNIDFERL 320

Length = 347

>gnl|CDD|236182 PRK08198, PRK08198, threonine dehydratase; Provisional

 Score =  330 bits (849), Expect = e-112
 Identities = 137/312 (43%), Positives = 200/312 (64%), Gaps = 10/312 (3%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
              I+EA++R+   + +TP+  S TL+ ++G  ++ KCE  Q+ G+FK RGA N + SL 
Sbjct: 6   LDDIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLS 65

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
           E++  +GVV  S+GNHA  ++ AA L GI A IV+P+ AP  KV+    YG +V+     
Sbjct: 66  EEERARGVVAASAGNHAQGVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDV 125

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
                + A ++ EETGA  VHP++D  +I+GQGTI LE LE +P +DT++VPI GGGLIS
Sbjct: 126 YDEALAKAQELAEETGATFVHPFDDPDVIAGQGTIGLEILEDLPDVDTVVVPIGGGGLIS 185

Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGL---RAFLGDLTW 248
           GVA A K+++P +R++  +  GA    +S AAGR + L   +T+ADG+   R   GDLT+
Sbjct: 186 GVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRP--GDLTF 243

Query: 249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKK 308
            I+R+LVDDV+TV D+EI  A+ L  E  K+ VE +GA+ +AA+LS            KK
Sbjct: 244 EIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSG-----KLDVKGKK 298

Query: 309 IGIVLSGGNVDL 320
           +  VLSGGN+D+
Sbjct: 299 VVAVLSGGNIDV 310

Length = 404

>gnl|CDD|235918 PRK07048, PRK07048, serine/threonine dehydratase; Validated

 Score =  323 bits (830), Expect = e-110
 Identities = 136/311 (43%), Positives = 199/311 (63%), Gaps = 6/311 (1%)

Query: 11  NFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSL 70
            +  +  A  R++   H+TPVL+S T ++ +G  +FFKCE FQ+ GAFKFRGA NA+   
Sbjct: 7   TYDDVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQF 66

Query: 71  DEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130
             +Q   GVVT SSGNHA A++L+A+L GIPA IV+P++AP  KV     YGG+V+  + 
Sbjct: 67  SPEQRRAGVVTFSSGNHAQAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDR 126

Query: 131 TMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLI 190
               RE +  ++ EE G  L+ PY+   +I+GQGT + E  E+V  LD + V + GGGL+
Sbjct: 127 YTEDREEIGRRLAEERGLTLIPPYDHPHVIAGQGTAAKELFEEVGPLDALFVCLGGGGLL 186

Query: 191 SGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWP 249
           SG ALAA+++ P  ++   EP   ND  QS  +G I+ +    T+ADG +   LG+ T+P
Sbjct: 187 SGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYTFP 246

Query: 250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKI 309
           I+R LVDD++TV D E+++AM+   E +K+ VEP+G +G AA L     K P     K++
Sbjct: 247 IIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALR---GKVPL--KGKRV 301

Query: 310 GIVLSGGNVDL 320
           G+++SGGNVDL
Sbjct: 302 GVIISGGNVDL 312

Length = 321

>gnl|CDD|130197 TIGR01127, ilvA_1Cterm, threonine ammonia-lyase, medium form

 Score =  267 bits (684), Expect = 1e-87
 Identities = 129/296 (43%), Positives = 186/296 (62%), Gaps = 6/296 (2%)

Query: 29  TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA 88
           TP++ S TL+ ++G  ++ K E  QK G+FK RGA N + +L EDQ  +GVV  S+GNHA
Sbjct: 1   TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHA 60

Query: 89  AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGA 148
             ++ AAK  GI A IV+P++AP  KV+    YG +VI          + A+ + EE G 
Sbjct: 61  QGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGDDYDEAYAFATSLAEEEGR 120

Query: 149 VLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILA 208
           V VHP++D  +++GQGTI LE +E +P +DT+IVP+ GGGLISGVA AAK I P ++++ 
Sbjct: 121 VFVHPFDDEFVMAGQGTIGLEIMEDIPDVDTVIVPVGGGGLISGVASAAKQINPNVKVIG 180

Query: 209 AEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRDLVDDVITVEDKEII 267
            E  GA    +S   G+I  +    T+ADG+     GDLT+ I+++ VDDV+TV+++EI 
Sbjct: 181 VEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIA 240

Query: 268 EAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVL 323
            A+ L  E  K+  E +GA G+AA+L             KKI +VLSGGN+DL +L
Sbjct: 241 NAIYLLLERHKILAEGAGAAGVAALLEQKVD-----VKGKKIAVVLSGGNIDLNLL 291

A form of threonine dehydratase with two copies of the C-terminal domain pfam00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 380

>gnl|CDD|236317 PRK08638, PRK08638, threonine dehydratase; Validated

 Score =  257 bits (659), Expect = 2e-84
 Identities = 129/307 (42%), Positives = 185/307 (60%), Gaps = 4/307 (1%)

Query: 15  IKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ 74
           I EA++R++  I KTP+  S  L+      +F K E  Q+ G+FK RGA N + SL + +
Sbjct: 14  IIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAE 73

Query: 75  AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHS 134
             KGVV  S+GNHA  ++L+  L GI   +V+PK APK KV     YG +V+      + 
Sbjct: 74  KRKGVVACSAGNHAQGVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDNFND 133

Query: 135 RESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVA 194
             +   +++EE G   + PY+D ++I+GQGTI LE LE +  +DT+IVPI GGGLI+G+A
Sbjct: 134 TIAKVEEIVEEEGRTFIPPYDDPKVIAGQGTIGLEILEDLWDVDTVIVPIGGGGLIAGIA 193

Query: 195 LAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR-AFLGDLTWPIVRD 253
           +A KSI P I I+  +    +  A S  AG I T   T T+ADG   +  G+LT+ IVR+
Sbjct: 194 VALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNLTYEIVRE 253

Query: 254 LVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVL 313
           LVDD++ V + EI  AMK   +  KV  E +GA+  AA+LS    K   +  +KK+  ++
Sbjct: 254 LVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSG---KLDQYIQNKKVVAII 310

Query: 314 SGGNVDL 320
           SGGNVDL
Sbjct: 311 SGGNVDL 317

Length = 333

>gnl|CDD|235842 PRK06608, PRK06608, threonine dehydratase; Provisional

 Score =  246 bits (629), Expect = 7e-80
 Identities = 119/315 (37%), Positives = 171/315 (54%), Gaps = 15/315 (4%)

Query: 11  NFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSL 70
           N  +I  A  RI  Y+H TP++ SE+LN M G  +FFK E  QK GAFK RG  N +L L
Sbjct: 6   NPQNIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLEL 65

Query: 71  DED-QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE 129
            E  +    +V +S+GNH  A++ A+KL GI   I +P N  K K +  + YGG+VI + 
Sbjct: 66  KEQGKLPDKIVAYSTGNHGQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTN 125

Query: 130 ATMHSRESVASKVLE--ETGAVLVHPYNDGRIISGQGTISLEFLEQVPL-LDTIIVPISG 186
               +R+    K  E  E G   +HP +    I+G GT+  E L+Q+    D I     G
Sbjct: 126 ----TRQEAEEKAKEDEEQGFYYIHPSDSDSTIAGAGTLCYEALQQLGFSPDAIFASCGG 181

Query: 187 GGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET-NTVADGLRAF-LG 244
           GGLISG  LA + I P   ++ +EP+ ANDA  S    +I  L  + NT+ADGL+   + 
Sbjct: 182 GGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVS 241

Query: 245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQ 304
             T+  ++ L DD   VE+ EI         +LKV  EPS AI + AV++    ++    
Sbjct: 242 ARTFEYLKKL-DDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNWLKTQSK--- 297

Query: 305 DSKKIGIVLSGGNVD 319
             +K+ ++LSGGN+D
Sbjct: 298 -PQKLLVILSGGNID 311

Length = 338

>gnl|CDD|180550 PRK06382, PRK06382, threonine dehydratase; Provisional

 Score =  246 bits (630), Expect = 3e-79
 Identities = 119/309 (38%), Positives = 177/309 (57%), Gaps = 6/309 (1%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
           F  I  A+  +  Y+++TP++ S T     G  ++FK E FQK G+FK RGA      L 
Sbjct: 9   FDDILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLS 68

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
           ED+   GV+T S+GNHA  ++ AA + GI A IV+P+     KV  V  YG  VI +   
Sbjct: 69  EDELRNGVITASAGNHAQGVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRD 128

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
                  A K+  +     +  +ND  +ISGQGTI LE +E +P LD IIVP+ GGGLIS
Sbjct: 129 YDEAHRYADKIAMDENRTFIEAFNDRWVISGQGTIGLEIMEDLPDLDQIIVPVGGGGLIS 188

Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPI 250
           G+ALAAK I P ++I+  E   ++    S   G+I+      ++ DG+   + GDLT+ I
Sbjct: 189 GIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTFDI 248

Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
            ++ VDD++TV ++ + +A+   +E  K+  EPSGA+GLAA++             KK+ 
Sbjct: 249 AKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEGKVD-----VKGKKVA 303

Query: 311 IVLSGGNVD 319
           IV+SGGN++
Sbjct: 304 IVVSGGNIN 312

Length = 406

>gnl|CDD|235994 PRK07334, PRK07334, threonine dehydratase; Provisional

 Score =  245 bits (629), Expect = 6e-79
 Identities = 127/315 (40%), Positives = 188/315 (59%), Gaps = 20/315 (6%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
            + I+ A  R++  + +TP + S TL+ ++G  ++ K E  Q   +FK RGA N +L L 
Sbjct: 7   LADIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLT 66

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI----- 126
           E++  +GV+  S+GNHA  ++  A+  GIPA IV+P+  P  KVE    +G +V+     
Sbjct: 67  EEERARGVIAMSAGNHAQGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGET 126

Query: 127 WSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISG 186
             EA  H+RE     + EE G   VHPY+D  +I+GQGT++LE LE  P LDT++VPI G
Sbjct: 127 LDEARAHARE-----LAEEEGLTFVHPYDDPAVIAGQGTVALEMLEDAPDLDTLVVPIGG 181

Query: 187 GGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF--LG 244
           GGLISG+A AAK++KP I I+  +      +  +   G  +     +T+A+G+ A    G
Sbjct: 182 GGLISGMATAAKALKPDIEIIGVQT-ELYPSMYAAIKGVALP-CGGSTIAEGI-AVKQPG 238

Query: 245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQ 304
            LT  IVR LVDD++ V + +I +A+ L  EI K  VE +GA GLAA+L+      P   
Sbjct: 239 QLTLEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLA-----YPERF 293

Query: 305 DSKKIGIVLSGGNVD 319
             +K+G+VLSGGN+D
Sbjct: 294 RGRKVGLVLSGGNID 308

Length = 403

>gnl|CDD|181457 PRK08526, PRK08526, threonine dehydratase; Provisional

 Score =  239 bits (611), Expect = 3e-76
 Identities = 117/312 (37%), Positives = 180/312 (57%), Gaps = 5/312 (1%)

Query: 13  SSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDE 72
           + I +A++RIS +++KTP   +  L+ +SG  ++ K E  Q  GA+K RGA N + +L E
Sbjct: 5   NKIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSE 64

Query: 73  DQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATM 132
           +Q   GV+  S+GNHA  ++++AK  GI A IV+P+  P  KV      G +VI      
Sbjct: 65  EQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNY 124

Query: 133 HSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISG 192
               + A +  +E     +HP+ D  +++GQGTI+LE L+++  LD ++VP+ GGGLISG
Sbjct: 125 DEAYAFALEYAKENNLTFIHPFEDEEVMAGQGTIALEMLDEISDLDMVVVPVGGGGLISG 184

Query: 193 VALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIV 251
           +A AAK I P I+I+     GA    +S  A +II      T+ADG+       +   I+
Sbjct: 185 IASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPINLAII 244

Query: 252 RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGI 311
            + VDD + V+D+EI  A+    E  K+ VE +GA  +AA+L          +  KKIG+
Sbjct: 245 LECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQKI----DLKKGKKIGV 300

Query: 312 VLSGGNVDLGVL 323
           VLSGGN+D+ +L
Sbjct: 301 VLSGGNIDVQML 312

Length = 403

>gnl|CDD|180709 PRK06815, PRK06815, hypothetical protein; Provisional

 Score =  233 bits (595), Expect = 6e-75
 Identities = 116/311 (37%), Positives = 177/311 (56%), Gaps = 7/311 (2%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
           F +I EA +R+   +  TP+  S  L+  +G  ++ KCE  Q  G+FKFRGASN +  L+
Sbjct: 4   FDAILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLN 63

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
           E Q  +GV+T SSGNH   ++LAAKL GIP  +  P+ A   K++ +   G +V      
Sbjct: 64  EAQRQQGVITASSGNHGQGVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD 123

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
             + E  A +  E+ G V + PYND ++I+GQGTI +E +EQ P LD + V + GGGLIS
Sbjct: 124 ALNAELAARRAAEQQGKVYISPYNDPQVIAGQGTIGMELVEQQPDLDAVFVAVGGGGLIS 183

Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFL--GDLTWP 249
           G+A   K++ P   I+   P  +     S  AG I+ + E  T++DG    +  G +T+P
Sbjct: 184 GIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFP 243

Query: 250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKI 309
           + + L+D  + V ++EI EAM+L  E  +  +E +  + LAA L    +  P +Q  KK+
Sbjct: 244 LCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAAL----KLAPRYQ-GKKV 298

Query: 310 GIVLSGGNVDL 320
            +VL G N+ L
Sbjct: 299 AVVLCGKNIVL 309

Length = 317

>gnl|CDD|236025 PRK07476, eutB, threonine dehydratase; Provisional

 Score =  226 bits (579), Expect = 1e-72
 Identities = 119/318 (37%), Positives = 190/318 (59%), Gaps = 18/318 (5%)

Query: 13  SSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDE 72
           + I  A++RI+  + +TP+++S +L++ +G  ++ K E  Q  G+FK RGA+NA+LSL  
Sbjct: 4   ADIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSA 63

Query: 73  DQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATM 132
            +  +GVVT S+GNH  AL+ AA+  GI A I + +  P  KV+ +   G +V     + 
Sbjct: 64  QERARGVVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRSQ 123

Query: 133 HSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISG 192
              ++   +++ E G  +V P++D RII+GQGTI LE LE +P + T++VP+SGGGL SG
Sbjct: 124 DDAQAEVERLVREEGLTMVPPFDDPRIIAGQGTIGLEILEALPDVATVLVPLSGGGLASG 183

Query: 193 VALAAKSIKPAIRILAAEPIG---ANDAA--QSKAAGRIITLLETNTVADGLRAFLG--- 244
           VA A K+I+PAIR+     IG      AA   S AAGR + + E  T+AD L   +G   
Sbjct: 184 VAAAVKAIRPAIRV-----IGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDN 238

Query: 245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQ 304
             T+ + R L+DDV+ +++ EI   ++  Y   ++ VE +GA+G+AA+L+          
Sbjct: 239 RYTFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAGKIAAR---- 294

Query: 305 DSKKIGIVLSGGNVDLGV 322
               I +V+SG N+D+ +
Sbjct: 295 -DGPIVVVVSGANIDMEL 311

Length = 322

>gnl|CDD|181319 PRK08246, PRK08246, threonine dehydratase; Provisional

 Score =  217 bits (555), Expect = 5e-69
 Identities = 106/308 (34%), Positives = 164/308 (53%), Gaps = 11/308 (3%)

Query: 13  SSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDE 72
           S ++ A +RI+ +I +TPVL ++         ++ K E  Q  G+FK RGA N +L+   
Sbjct: 8   SDVRAAAQRIAPHIRRTPVLEAD-GAGFGPAPVWLKLEHLQHTGSFKARGAFNRLLAAPV 66

Query: 73  DQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATM 132
             A  GVV  S GN   A++ AA   G+PA + +P+ AP  KV  +   G +V+   A  
Sbjct: 67  PAA--GVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAEY 124

Query: 133 HSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISG 192
                 A     ETGA+L H Y+   +++G GT+ LE  EQ P +DT++V + GGGLI+G
Sbjct: 125 ADALEAAQAFAAETGALLCHAYDQPEVLAGAGTLGLEIEEQAPGVDTVLVAVGGGGLIAG 184

Query: 193 VALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIV 251
           +A      +   R++A EP GA     + AAG  + +  +   AD L A  +G++ + + 
Sbjct: 185 IAAWF---EGRARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIAFALA 241

Query: 252 RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGI 311
           R  V   + V D+ II A +  +E L++AVEP  A  LAA+LS  +   P     +++ +
Sbjct: 242 RAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSGAYVPAP----GERVAV 297

Query: 312 VLSGGNVD 319
           VL G N D
Sbjct: 298 VLCGANTD 305

Length = 310

>gnl|CDD|215840 pfam00291, PALP, Pyridoxal-phosphate dependent enzyme

 Score =  208 bits (530), Expect = 2e-65
 Identities = 97/302 (32%), Positives = 145/302 (48%), Gaps = 15/302 (4%)

Query: 22  ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT 81
           ISL I  TP++   +     G  ++ K E     G+FK RGA+  +L   E      VV 
Sbjct: 1   ISLGIGPTPLVRLPSPLL--GARVYLKLESLNPTGSFKDRGAAYLLLRALERG--ATVVE 56

Query: 82  HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS------EATMHSR 135
            SSGN   AL+ AA   G+   IV+P+ A   K+  +   G +VI        +  +   
Sbjct: 57  ASSGNTGRALAAAAARLGLKVTIVVPEGASPGKLLLMRALGAEVILVVSEGDYDDALELA 116

Query: 136 ESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGV 193
           E  A  +    G + +  YN+  +I+G  TI LE LEQ+     D ++VP+ GGGL +G+
Sbjct: 117 EEAAELLAAYDGPIPLGQYNNPNVIAGYKTIGLEILEQLGQGDPDAVVVPVGGGGLAAGI 176

Query: 194 ALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRD 253
           A   K + P IR++  EP GA   A+S  AGR +    T           G+L   ++ +
Sbjct: 177 ARGLKELGPGIRVIGVEPEGAPALARSLEAGRRVPKPTTIAGLGPGIPLDGELALELIDE 236

Query: 254 LVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVL 313
            V DV  V D+E +EA++L      + VEPS A  LAA L     +       K++ +VL
Sbjct: 237 YVGDVYAVSDEEALEAIRLLARREGILVEPSSAAALAAALRLAELELGK---GKRVVVVL 293

Query: 314 SG 315
           +G
Sbjct: 294 TG 295

Members of this family are all pyridoxal-phosphate dependent enzymes. This family includes: serine dehydratase EC:4.2.1.13 P20132, threonine dehydratase EC:4.2.1.16, tryptophan synthase beta chain EC:4.2.1.20, threonine synthase EC:4.2.99.2, cysteine synthase EC:4.2.99.8 P11096, cystathionine beta-synthase EC:4.2.1.22, 1-aminocyclopropane-1-carboxylate deaminase EC:4.1.99.4. Length = 295

>gnl|CDD|130194 TIGR01124, ilvA_2Cterm, threonine ammonia-lyase, biosynthetic, long form

 Score =  207 bits (528), Expect = 5e-63
 Identities = 99/295 (33%), Positives = 164/295 (55%), Gaps = 9/295 (3%)

Query: 29  TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA 88
           TP+  +  L+   G  +  K E  Q   +FK RGA N +  L  +Q  +GV+  S+GNHA
Sbjct: 18  TPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHA 77

Query: 89  AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGA 148
             ++ +A   G+ A IV+P+  P  KV+ V  +GG+V+   A     ++ A ++ +E G 
Sbjct: 78  QGVAFSAARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGANFDDAKAKAIELSQEKGL 137

Query: 149 VLVHPYNDGRIISGQGTISLEFLEQVPL-LDTIIVPISGGGLISGVALAAKSIKPAIRIL 207
             +HP++D  +I+GQGT++LE L QV   LD + VP+ GGGL +GVA   K + P I+++
Sbjct: 138 TFIHPFDDPLVIAGQGTLALEILRQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVI 197

Query: 208 AAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRDLVDDVITVEDKEI 266
             EP  ++   Q+  AG  + L +    ADG+    +GD T+ + +  +DD++TV+  E+
Sbjct: 198 GVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDIVTVDTDEV 257

Query: 267 IEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQ--DSKKIGIVLSGGNVD 319
             A+K  +E  +   EP+GA+ LA     G +K  A      + +  +LSG N++
Sbjct: 258 CAAIKDLFEDTRAVAEPAGALALA-----GLKKYVALHGIRGQTLVAILSGANMN 307

This model describes a form of threonine ammonia-lyase, a pyridoxal-phosphate dependent enzyme, with two copies of the threonine dehydratase C-terminal domain (pfam00585). Members with known function participate in isoleucine biosynthesis and are inhibited by isoleucine. Alternate name: threonine deaminase, threonine dehydratase. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain [Amino acid biosynthesis, Pyruvate family]. Length = 499

>gnl|CDD|132036 TIGR02991, ectoine_eutB, ectoine utilization protein EutB

 Score =  200 bits (510), Expect = 3e-62
 Identities = 111/312 (35%), Positives = 183/312 (58%), Gaps = 11/312 (3%)

Query: 15  IKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ 74
           I+ A  RIS  + +TP++ S +L+ + G  +  K E  Q  G+FK RGA+NAVLSL + Q
Sbjct: 6   IERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQ 65

Query: 75  AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV-IWSEATMH 133
              GVV  S+GNH  AL+ AA   G+ A I + +  P+ KV+ + R G +V I   +   
Sbjct: 66  RAAGVVAASTGNHGRALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRSQDD 125

Query: 134 SRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGV 193
           ++E V  +++ + G  ++ P++   I++GQGT+ LE +EQ+P L T++VP+SGGGL SGV
Sbjct: 126 AQEEV-ERLVADRGLTMLPPFDHPDIVAGQGTLGLEVVEQMPDLATVLVPLSGGGLASGV 184

Query: 194 ALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLG---DLTWPI 250
           A+A K+ +P  R++            S  AGR + + E  T+AD L   +G    +T+ +
Sbjct: 185 AMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRVTFAM 244

Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
            + L+D+++ V + EI   ++  Y   +  VE +GA+G+AA+L+ G  KNP         
Sbjct: 245 CKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLA-GKIKNPG-----PCA 298

Query: 311 IVLSGGNVDLGV 322
           +++SG N+D+ +
Sbjct: 299 VIVSGRNIDMDL 310

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases. Length = 317

>gnl|CDD|107202 cd00640, Trp-synth-beta_II, Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

 Score =  195 bits (498), Expect = 3e-61
 Identities = 82/293 (27%), Positives = 137/293 (46%), Gaps = 54/293 (18%)

Query: 29  TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG--VVTHSSGN 86
           TP++  + L+ + G +++ K E     G+FK RGA N +L  +E+  +    ++  + GN
Sbjct: 1   TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGN 60

Query: 87  HAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET 146
              AL+ AA   G+   IV+P+ A   KV  +   G +V+          ++A ++ EE 
Sbjct: 61  TGIALAAAAARLGLKCTIVMPEGASPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEED 120

Query: 147 -GAVLVHPYNDGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPA 203
            GA  V+ +++   I+GQGTI LE LEQ+     D ++VP+ GGG I+G+A A K + P 
Sbjct: 121 PGAYYVNQFDNPANIAGQGTIGLEILEQLGGQKPDAVVVPVGGGGNIAGIARALKELLPN 180

Query: 204 IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVED 263
           ++++  EP                                             +V+TV D
Sbjct: 181 VKVIGVEP---------------------------------------------EVVTVSD 195

Query: 264 KEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG 316
           +E +EA++L      + VEPS A  LAA L    +        K + ++L+GG
Sbjct: 196 EEALEAIRLLAREEGILVEPSSAAALAAALKLAKKLGK----GKTVVVILTGG 244

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehyd catalyzes the conversion of L- or D-serine to pyruvate and ammonia. Thr-dehyd is active as a homodimer and catalyzes the conversion of L-threonine to 2-oxobutanoate and ammonia. DAL is also a homodimer and catalyzes the alpha, beta-elimination reaction of both L- and D-alpha, beta-diaminopropionate to form pyruvate and ammonia. Thr-synth catalyzes the formation of threonine and inorganic phosphate from O-phosphohomoserine. Length = 244

>gnl|CDD|236417 PRK09224, PRK09224, threonine dehydratase; Reviewed

 Score =  201 bits (514), Expect = 1e-60
 Identities = 106/298 (35%), Positives = 168/298 (56%), Gaps = 15/298 (5%)

Query: 28  KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH 87
           +TP+  +  L++  G  +  K E  Q   +FK RGA N +  L E+Q  +GV+T S+GNH
Sbjct: 20  ETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVITASAGNH 79

Query: 88  AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI-----WSEATMHSRESVASKV 142
           A  ++L+A   GI A IV+P   P  KV+ V  +GG+V+     + EA  H+ E      
Sbjct: 80  AQGVALSAARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELA---- 135

Query: 143 LEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIK 201
            EE G   +HP++D  +I+GQGTI++E L+Q P  LD + VP+ GGGLI+GVA   K ++
Sbjct: 136 -EEEGLTFIHPFDDPDVIAGQGTIAMEILQQHPHPLDAVFVPVGGGGLIAGVAAYIKQLR 194

Query: 202 PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR-AFLGDLTWPIVRDLVDDVIT 260
           P I+++  EP  +     +  AG  + L +    ADG+    +G+ T+ + ++ VDDVIT
Sbjct: 195 PEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDDVIT 254

Query: 261 VEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNV 318
           V+  EI  A+K  +E  +   EP+GA+ LA +     +      + + +  +LSG N+
Sbjct: 255 VDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKYVAQHG---IEGETLVAILSGANM 309

Length = 504

>gnl|CDD|237111 PRK12483, PRK12483, threonine dehydratase; Reviewed

 Score =  198 bits (504), Expect = 3e-59
 Identities = 100/272 (36%), Positives = 159/272 (58%), Gaps = 12/272 (4%)

Query: 28  KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH 87
           +TP+  +  L++  G  +  K E  Q   +FK RGA N +  L  +Q  +GV+T S+GNH
Sbjct: 37  ETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNH 96

Query: 88  AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI-----WSEATMHSRESVASKV 142
           A  ++LAA   G+ A IV+P+  P+ KV+ V  +GG+V+     + +A  H     A K+
Sbjct: 97  AQGVALAAARLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAH-----ALKL 151

Query: 143 LEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIK 201
            EE G   V P++D  +I+GQGT+++E L Q P  LD I VP+ GGGLI+G+A   K ++
Sbjct: 152 AEEEGLTFVPPFDDPDVIAGQGTVAMEILRQHPGPLDAIFVPVGGGGLIAGIAAYVKYVR 211

Query: 202 PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR-AFLGDLTWPIVRDLVDDVIT 260
           P I+++  EP  +N    + AAG  + L +    ADG+  A +G+ T+ + R  VD+V+T
Sbjct: 212 PEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDEVVT 271

Query: 261 VEDKEIIEAMKLCYEILKVAVEPSGAIGLAAV 292
           V   E+  A+K  Y+  +   EP+GA+ +A +
Sbjct: 272 VSTDELCAAIKDIYDDTRSITEPAGALAVAGI 303

Length = 521

>gnl|CDD|236318 PRK08639, PRK08639, threonine dehydratase; Validated

 Score =  184 bits (470), Expect = 4e-55
 Identities = 104/317 (32%), Positives = 174/317 (54%), Gaps = 22/317 (6%)

Query: 15  IKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ 74
           I +A KR+   + +TP+  ++ L+   G +++ K E  Q   ++K RGA NA+  L +++
Sbjct: 12  IDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEE 71

Query: 75  AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI-------- 126
              GVV  S+GNHA  ++ A +  GIP  I +P   P+ K++ V  +GG+ +        
Sbjct: 72  LAAGVVCASAGNHAQGVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDT 131

Query: 127 WSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQV---PLLDTIIVP 183
           + ++   ++E       EETGA  + P++D  +I+GQGT+++E LEQ+      D + VP
Sbjct: 132 FDDSAAAAQEYA-----EETGATFIPPFDDPDVIAGQGTVAVEILEQLEKEGSPDYVFVP 186

Query: 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR-AF 242
           + GGGLISGV    K   P  +I+  EP GA     +  AG+ +TL + +   DG   A 
Sbjct: 187 VGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVAR 246

Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
           +GDLT+ I++D+VDDV+ V +  +   +   Y    +  EP+GA+ +AA+  + ++    
Sbjct: 247 VGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAAL--ELYKDEIK 304

Query: 303 WQDSKKIGIVLSGGNVD 319
               K +  V+SGGN D
Sbjct: 305 ---GKTVVCVISGGNND 318

Length = 420

>gnl|CDD|233712 TIGR02079, THD1, threonine dehydratase

 Score =  175 bits (445), Expect = 2e-51
 Identities = 100/311 (32%), Positives = 164/311 (52%), Gaps = 10/311 (3%)

Query: 15  IKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ 74
           I+ A+KR+   +  TP+  +E L+   G +++ K E  Q   ++K RGA N +  L + Q
Sbjct: 3   IEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQ 62

Query: 75  AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ---VIWSEAT 131
             KGVV  S+GNHA   + A +  G+   + +P   PK K++ V  +GG+   +I    T
Sbjct: 63  LAKGVVCASAGNHAQGFAYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDT 122

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLI 190
                + A + +E+ G   + P++D RII GQGT++ E L+Q+P   D ++VP+ GGGLI
Sbjct: 123 FDQCAAAAREHVEDHGGTFIPPFDDPRIIEGQGTVAAEILDQLPEKPDYVVVPVGGGGLI 182

Query: 191 SGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR-AFLGDLTWP 249
           SG+        P  +I+  EP GA     S  AG ++TL + +   DG     +GDL + 
Sbjct: 183 SGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLNFK 242

Query: 250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKI 309
            ++D+ D+V  V +  +   +   Y +  +  EP+GA+ +AA+   G          K +
Sbjct: 243 ALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERLGEEI-----KGKTV 297

Query: 310 GIVLSGGNVDL 320
             V+SGGN D+
Sbjct: 298 VCVVSGGNNDI 308

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been charcterized (TIGR01124 and TIGR01127). Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway [Amino acid biosynthesis, Pyruvate family]. Length = 409

>gnl|CDD|178165 PLN02550, PLN02550, threonine dehydratase

 Score =  151 bits (384), Expect = 1e-41
 Identities = 87/265 (32%), Positives = 145/265 (54%), Gaps = 2/265 (0%)

Query: 28  KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH 87
           ++P+  ++ L+   G  +  K E  Q   +FK RGA N +  L ++Q  KGV+  S+GNH
Sbjct: 109 ESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNH 168

Query: 88  AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETG 147
           A  ++L+A+  G  A I +P   P+ K ++V R G  V+    +    ++ A +   E G
Sbjct: 169 AQGVALSAQRLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRALEEG 228

Query: 148 AVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRI 206
              + P++   +I+GQGT+ +E + Q    L  I VP+ GGGLI+G+A   K ++P ++I
Sbjct: 229 RTFIPPFDHPDVIAGQGTVGMEIVRQHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKI 288

Query: 207 LAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRDLVDDVITVEDKE 265
           +  EP  AN  A S   G  + L +    ADG+    +G+ T+ + R+LVD V+ V    
Sbjct: 289 IGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGVVLVSRDA 348

Query: 266 IIEAMKLCYEILKVAVEPSGAIGLA 290
           I  ++K  +E  +  +EP+GA+ LA
Sbjct: 349 ICASIKDMFEEKRSILEPAGALALA 373

Length = 591

>gnl|CDD|236339 PRK08813, PRK08813, threonine dehydratase; Provisional

 Score =  141 bits (357), Expect = 3e-39
 Identities = 104/324 (32%), Positives = 169/324 (52%), Gaps = 23/324 (7%)

Query: 2   EANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFR 61
           E +    A + + +  AQ R+  Y+  TP+  +E            K E  Q+ G++K R
Sbjct: 13  EPDVGDVAVSVADVLAAQARLRRYLSPTPLHYAERFGVW------LKLENLQRTGSYKVR 66

Query: 62  GASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRY 121
           GA NA+L+  E    + V+  S+GNHA  ++ +A   G+ A  V+P  AP+ K+  V  +
Sbjct: 67  GALNALLAGLERGDERPVICASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHW 126

Query: 122 GGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTII 181
           G  V     +     + A ++ ++ G   +  ++D  +I+GQGT+ +E     P  D +I
Sbjct: 127 GATVRQHGNSYDEAYAFARELADQNGYRFLSAFDDPDVIAGQGTVGIELAAHAP--DVVI 184

Query: 182 VPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA 241
           VPI GGGL SGVALA KS    +R++ A+  G +  A++   G +  +    T+ADG++ 
Sbjct: 185 VPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARA-IRGDLREIAPVATLADGVKV 241

Query: 242 FL-GDLTWPIVRDLVDDVITVEDKEIIEAM-KLCYEILKVAVEPSGAIGLAAVLSDGFRK 299
            + G LT  +   L+DDV+ V + E+ E + +L  E   +A E +GA+ LAA    G R 
Sbjct: 242 KIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIA-EGAGALALAA----GRRV 296

Query: 300 NPAWQDSKKIGIVLSGGNVDLGVL 323
           +      K+   V+SGGN+D  VL
Sbjct: 297 S-----GKRKCAVVSGGNIDATVL 315

Length = 349

>gnl|CDD|235699 PRK06110, PRK06110, hypothetical protein; Provisional

 Score =  133 bits (337), Expect = 1e-36
 Identities = 86/296 (29%), Positives = 132/296 (44%), Gaps = 40/296 (13%)

Query: 49  CECFQK------GGAFKFRGASNAVLSL-DEDQAIKGVVTHSSGNHAAALSLAAKLRGIP 101
           CE + K       GAFK RG       L      ++GV++ + GNH  +++ AA+  G+ 
Sbjct: 36  CEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNHGQSVAFAARRHGLA 95

Query: 102 AYIVIP------KNAP--KCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHP 153
           A IV+P      KNA       E ++ +G    +  A        A+++  E G  +V  
Sbjct: 96  ATIVVPHGNSVEKNAAMRALGAE-LIEHGED--FQAAREE-----AARLAAERGLHMVPS 147

Query: 154 YNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG 213
           ++   ++ G  T +LE    VP LD + VPI  G  I G   A  ++    RI+      
Sbjct: 148 FHP-DLVRGVATYALELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAH 206

Query: 214 ANDAAQSKAAGRIITLLETNTVADGLRAFLGDLT-WPIVRDLVDDVITVEDKEIIEAMKL 272
           A   A S  AGR++T     T+ADG+     D     ++R   D ++ V D E+  AM+ 
Sbjct: 207 APAYALSFEAGRVVTTPVATTLADGMACRTPDPEALEVIRAGADRIVRVTDDEVAAAMRA 266

Query: 273 CYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQD-----SKKIGIVLSGGNVDLGVL 323
            +       E +GA  LAA          A Q+      K++G+VLSGGN+D  V 
Sbjct: 267 YFTDTHNVAEGAGAAALAA----------ALQERERLAGKRVGLVLSGGNIDRAVF 312

Length = 322

>gnl|CDD|107209 cd06448, L-Ser-dehyd, Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

 Score =  118 bits (298), Expect = 5e-31
 Identities = 84/312 (26%), Positives = 140/312 (44%), Gaps = 19/312 (6%)

Query: 28  KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK--GVVTHSSG 85
           KTP++ S  L+  +G ++F K E  Q  G+FK RG  +      +    +   VV  S G
Sbjct: 1   KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGG 60

Query: 86  NHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI-----WSEATMHSRESVAS 140
           N   A + AA+  G+P  IV+P++     VE +   G  V+     W EA  + RE +A 
Sbjct: 61  NAGLAAAYAARKLGVPCTIVVPESTKPRVVEKLRDEGATVVVHGKVWWEADNYLREELAE 120

Query: 141 KVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPL---LDTIIVPISGGGLISGVALAA 197
               + G V VHP++D  I  G  ++  E  +Q+     +D I+  + GGGL++G+    
Sbjct: 121 N---DPGPVYVHPFDDPLIWEGHSSMVDEIAQQLQSQEKVDAIVCSVGGGGLLNGIVQGL 177

Query: 198 KSIKPA-IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRDLV 255
           +      I ++A E  GA+    S  AG+++TL +  +VA  L A  +        ++  
Sbjct: 178 ERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHN 237

Query: 256 DDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN----PAWQDSKKIGI 311
                V D++ ++A     +  ++ VEP+    LA V S                  + +
Sbjct: 238 IKSEVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVV 297

Query: 312 VLSGGNVDLGVL 323
           V  G N+ L  L
Sbjct: 298 VCGGSNITLEQL 309

Length = 316

>gnl|CDD|107206 cd01563, Thr-synth_1, Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

 Score =  106 bits (268), Expect = 1e-26
 Identities = 78/284 (27%), Positives = 123/284 (43%), Gaps = 26/284 (9%)

Query: 29  TPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAV---LSLDEDQAIKGVVTHSS 84
           TP++ +  L    G ++L+ K E     G+FK RG + AV     L     +K V   S+
Sbjct: 23  TPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELG----VKAVACAST 78

Query: 85  GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLE 144
           GN +A+L+  A   GI   + +P      K+   + YG  V+  E        +  ++ E
Sbjct: 79  GNTSASLAAYAARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGNFDDALRLVRELAE 138

Query: 145 ETGAVLVHPYNDGRIISGQGTISLEFLEQ----VPLLDTIIVPISGGGLISGVALAAK-- 198
           E    L +  N  R + GQ TI+ E  EQ    VP  D ++VP+  GG I+ +    K  
Sbjct: 139 ENWIYLSNSLNPYR-LEGQKTIAFEIAEQLGWEVP--DYVVVPVGNGGNITAIWKGFKEL 195

Query: 199 ----SIKPAIRILAAEPIGANDAAQSKAAGR--IITLLETNTVADGLR---AFLGDLTWP 249
                I    R++  +  GA    ++   G+  I  +    T+A  +R      G     
Sbjct: 196 KELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPKALR 255

Query: 250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVL 293
            VR+     + V D+EI+EA KL      + VEP+ A  LA + 
Sbjct: 256 AVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLK 299

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants. Length = 324

>gnl|CDD|107204 cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

 Score = 88.7 bits (221), Expect = 3e-20
 Identities = 64/279 (22%), Positives = 119/279 (42%), Gaps = 27/279 (9%)

Query: 28  KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG---VVTHSS 84
            TP++    L+  +G  ++ K E F  GG+ K R A   +   ++   +K    ++  +S
Sbjct: 2   NTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTS 61

Query: 85  GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT----MHSRESVAS 140
           GN    L++ A  +G    IV+P+   + K + +   G +VI +       M    + A 
Sbjct: 62  GNTGIGLAMVAAAKGYRFIIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKAR 121

Query: 141 KVLEET-GAVLVHPY-NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAA 197
           ++  ET  A  ++ + N     +   T + E  EQ+   +D  +  +  GG I+GVA   
Sbjct: 122 ELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGKVDAFVAGVGTGGTITGVARYL 181

Query: 198 KSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDD 257
           K   P +RI+  +P+G+   +        I  +    + + L            R L+D+
Sbjct: 182 KEKNPNVRIVGVDPVGSVLFSGGPPGPHKIEGIGAGFIPENLD-----------RSLIDE 230

Query: 258 VITVEDKEIIEAMKLCYEILK---VAVEPSGAIGLAAVL 293
           V+ V D+   EA  +   + +   + V  S    +AA L
Sbjct: 231 VVRVSDE---EAFAMARRLAREEGLLVGGSSGAAVAAAL 266

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine. Length = 291

>gnl|CDD|223572 COG0498, ThrC, Threonine synthase [Amino acid transport and metabolism]

 Score = 85.4 bits (212), Expect = 1e-18
 Identities = 62/262 (23%), Positives = 108/262 (41%), Gaps = 19/262 (7%)

Query: 45  LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYI 104
           L+ K       G+FK RG +  V    E    K ++  SSGN  A+ +  A   G+  ++
Sbjct: 96  LYVKELGHNPTGSFKDRGMTVLVSLAKEL-GAKTILCASSGNTGASAAAYAARAGLKVFV 154

Query: 105 VIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAV-LVHPYNDGRIISG 162
           + PK      K+  ++  G  VI  +      + +  +     G +  V+  N  R+  G
Sbjct: 155 LYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDAQELVKEAANREGLLSAVNSINPYRLE-G 213

Query: 163 QGTISLEFLEQVPLL--DTIIVPISGGGLISGVALAAK------SIKPAIRILAAEPIGA 214
           Q T + E  EQ+     D ++VP+  GG +  +    K       I  A  +   +  G 
Sbjct: 214 QKTYAFEIAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGF 273

Query: 215 NDAAQSKAAGRIITLLETNTVADGLR---AFLGDLTWPIVRDLVDDVITVEDKEIIEAMK 271
           +    +   GR        T+A  +        +     +R+     + V D+EI+EA+K
Sbjct: 274 SPGVYAWKEGRETP----ETIAPAMDIGNPSNWERALFALRESGGLAVAVSDEEILEAIK 329

Query: 272 LCYEILKVAVEPSGAIGLAAVL 293
           L  E   + +EP  A+ +AA+L
Sbjct: 330 LLAEREGILIEPHSAVAVAALL 351

Length = 411

>gnl|CDD|223110 COG0031, CysK, Cysteine synthase [Amino acid transport and metabolism]

 Score = 76.8 bits (190), Expect = 4e-16
 Identities = 68/279 (24%), Positives = 115/279 (41%), Gaps = 24/279 (8%)

Query: 26  IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG---VVTH 82
           I  TP++    L+  +G  ++ K E F  GG+ K R A   +   ++   +K    +V  
Sbjct: 9   IGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEA 68

Query: 83  SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT---MHSRESVA 139
           +SGN   AL++ A  +G    IV+P+   + + + +   G +VI +      M      A
Sbjct: 69  TSGNTGIALAMVAAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERA 128

Query: 140 SKVLEETGAVLVHP---YNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVAL 195
            ++  E     V      N     +   T   E  +Q    +D  +  +  GG I+GVA 
Sbjct: 129 KELAAEIPGYAVWLNQFENPANPEAHYETTGPEIWQQTDGKVDAFVAGVGTGGTITGVAR 188

Query: 196 AAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV-RDL 254
             K   P +RI+A +P G+   +  +   +I          +G+ A         +  DL
Sbjct: 189 YLKERNPNVRIVAVDPEGSVLLSGGEGPHKI----------EGIGA---GFVPENLDLDL 235

Query: 255 VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVL 293
           +D+VI V D+E I   +       + V  S    LAA L
Sbjct: 236 IDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAAL 274

Length = 300

>gnl|CDD|181283 PRK08197, PRK08197, threonine synthase; Validated

 Score = 75.4 bits (186), Expect = 4e-15
 Identities = 80/302 (26%), Positives = 127/302 (42%), Gaps = 34/302 (11%)

Query: 15  IKEAQKRISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDED 73
           +++ +  +SL    TP+L    L    G   L+ K E     G+FK RG +  V S  ++
Sbjct: 66  VRDPEHIVSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGV-SRAKE 124

Query: 74  QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMH 133
             +K +   ++GN  AA +  A   GI A I +P +AP+         G ++   +  + 
Sbjct: 125 LGVKHLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDGLIS 184

Query: 134 SRESVASKVLEETG----AVLVHPYNDGRIISGQGTISLEFLEQ----VPLLDTIIVPIS 185
               + ++ + E G    + L  PY     I G+ T+ LE  EQ    +P  D I+ P  
Sbjct: 185 DAGKIVAEAVAEYGWFDVSTLKEPYR----IEGKKTMGLELAEQLGWRLP--DVILYPTG 238

Query: 186 GG-GLISGVALAAKSIK-------PAIRILAAEPIGANDAAQSKAAGRIITLLE----TN 233
           GG GLI G+  A   ++          R++A +  G     ++   G+     E     +
Sbjct: 239 GGVGLI-GIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGK--EESEFWEDAH 295

Query: 234 TVADGLR--AFLGD-LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLA 290
           TVA G+R    LGD L    VR+     I V D  I+ A +       +   P GA   A
Sbjct: 296 TVAFGIRVPKALGDFLVLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFA 355

Query: 291 AV 292
           A 
Sbjct: 356 AA 357

Length = 394

>gnl|CDD|235539 PRK05638, PRK05638, threonine synthase; Validated

 Score = 74.5 bits (183), Expect = 8e-15
 Identities = 73/309 (23%), Positives = 137/309 (44%), Gaps = 20/309 (6%)

Query: 17  EAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAI 76
           + +K ISL    TP++ +     + G +++ K E     G+F+ R A+ AV S     A 
Sbjct: 55  QVKKIISLGEGGTPLIRARISEKL-GENVYIKDETRNPTGSFRDRLATVAV-SYGLPYAA 112

Query: 77  KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRE 136
            G +  S GN AA+++  +   G  A++V+P+   K K+  ++ +G ++I    ++    
Sbjct: 113 NGFIVASDGNAAASVAAYSARAGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGESVDEAI 172

Query: 137 SVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQV-PLLDTIIVPISGGGLISGVAL 195
             A ++    G   V P  +   + GQ TI+ E  E++ P    +IVP   G  +  +  
Sbjct: 173 EYAEELARLNGLYNVTPEYNIIGLEGQKTIAFELWEEINP--THVIVPTGSGSYLYSI-- 228

Query: 196 AAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETN------TVADGL---RAFLGDL 246
             K  K  + I   E I    A Q++    I + +  N      T A GL      + + 
Sbjct: 229 -YKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTKCNETKALGLYVKNPVMKEY 287

Query: 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDS 306
               +++     + V ++EI+   KL  +   +  E S A+ + A+L  G  +    +  
Sbjct: 288 VSEAIKESGGTAVVVNEEEIMAGEKLLAK-EGIFAELSSAVVMPALLKLG--EEGYIEKG 344

Query: 307 KKIGIVLSG 315
            K+ +V++G
Sbjct: 345 DKVVLVVTG 353

Length = 442

>gnl|CDD|236186 PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional

 Score = 71.4 bits (176), Expect = 7e-14
 Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 60/348 (17%)

Query: 14  SIKEAQKRISLYIH-----KTPVLSSETLNSMSG-RSLFFKCECFQKG-GAFKFRGASNA 66
           S +EA+K  + +        TP+++   L +  G  S+  K E ++ G  AFK  G + A
Sbjct: 25  SQEEAKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYA 84

Query: 67  VL------------SLDEDQAIKG----------VVTHSSGNHAAALSLAAKLRGIPAYI 104
           V              L  ++   G            T + GNH   ++ AA+  G  A I
Sbjct: 85  VARLLAEKLGLDISELSFEELTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVI 144

Query: 105 VIPKNAPKCKVENVVRYGGQVIWSEATMHSRESV--ASKVLEETGAVLVHP-----YND- 156
            +PK + + +V+ +   G + I ++   +  +SV  A++  +E G V+V       Y + 
Sbjct: 145 YMPKGSSEERVDAIRALGAECIITD--GNYDDSVRLAAQEAQENGWVVVQDTAWEGYEEI 202

Query: 157 -GRIISGQGTISLEFLEQVPLLDTII--VPISG--GGLISGVA--LAAKSIKPAIRILAA 209
              I+ G GT++ E +EQ+  +      V +    G L   V    A    +     +  
Sbjct: 203 PTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVV 262

Query: 210 EPIGANDAAQSKAAGRIITLL-ETNTVADGLRAFLGD---LTWPIVRDLVDDVITVEDKE 265
           EP  A+   QS   G+ + +  + +T+  GL    G+   L W I+R+  D  I+  D+ 
Sbjct: 263 EPDQADCLYQSAVDGKPVAVTGDMDTIMAGLAC--GEPNPLAWEILRNCADAFISCPDEV 320

Query: 266 IIEAMKLCYEILK-----VAVEPSGAIGLAAVLSDGFRKNPAWQDSKK 308
               M++    L      V+ E SGA+GL A+ +     +P +Q+ ++
Sbjct: 321 AALGMRILANPLGGDPPIVSGE-SGAVGLGALAA--LMTDPDYQELRE 365

Length = 399

>gnl|CDD|180565 PRK06450, PRK06450, threonine synthase; Validated

 Score = 70.5 bits (173), Expect = 1e-13
 Identities = 84/302 (27%), Positives = 135/302 (44%), Gaps = 49/302 (16%)

Query: 11  NFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSL 70
           NF  IK     ISL   +TP++           +++FK +     G++K RG S  ++S 
Sbjct: 44  NFPYIKH---FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRG-SVTLISY 91

Query: 71  DEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130
             ++ IK +   SSGN  A+++      GI   I +P+ A   K++ +  YG +V+    
Sbjct: 92  LAEKGIKQISEDSSGNAGASIAAYGAAAGIEVKIFVPETASGGKLKQIESYGAEVVRVRG 151

Query: 131 TMHSRESVASKVLEETGA-----VLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPIS 185
              SRE V +K  E +G      VL   + DG I +    I+ +   ++P  + + +P+S
Sbjct: 152 ---SREDV-AKAAENSGYYYASHVLQPQFRDG-IRTLAYEIAKDLDWKIP--NYVFIPVS 204

Query: 186 GGGLISGV------ALAAKSIKPAIRILAAE-----PIGANDAAQSKAAGRIITLLETNT 234
            G L+ GV       L +  I    +I+A +     P+ A     S      +T     +
Sbjct: 205 AGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVT-----S 259

Query: 235 VADGL---RAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILK--VAVEPSGAIGL 289
           +AD L   R FL D     + +   + I V D EI+EA K   E+ K  + VE S A   
Sbjct: 260 IADALVSTRPFLLDYMVKALSE-YGECIVVSDNEIVEAWK---ELAKKGLLVEYSSATVY 315

Query: 290 AA 291
           AA
Sbjct: 316 AA 317

Length = 338

>gnl|CDD|236244 PRK08329, PRK08329, threonine synthase; Validated

 Score = 69.9 bits (171), Expect = 2e-13
 Identities = 78/333 (23%), Positives = 130/333 (39%), Gaps = 33/333 (9%)

Query: 6   EKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMS---------GRSLFFKCECFQKGG 56
            +Y +  S  +    R   YI   PV   E L  ++            ++FK +  Q  G
Sbjct: 29  REYGSFDSPREYLDMR--RYIDYLPV-DEEFLPHLTPPITPTVKRSIKVYFKLDYLQPTG 85

Query: 57  AFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVE 116
           +FK RG    V  L E + I  VV  SSGN A +L+L +   GI  ++ +  NA K K+ 
Sbjct: 86  SFKDRGTYVTVAKLKE-EGINEVVIDSSGNAALSLALYSLSEGIKVHVFVSYNASKEKIS 144

Query: 117 NVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPL 176
            + R G ++ + E         A K  +      V  + +   + G  TI+ E  EQ+ +
Sbjct: 145 LLSRLGAELHFVEGDRMEVHEEAVKFSKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQIGV 204

Query: 177 LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITL-LETNTV 235
            D   VP+  G L  G+    K  K    +     +    A Q++    +       N +
Sbjct: 205 PDYAFVPVGSGTLFLGI---WKGFKELHEMGEISKMPKLVAVQAEGYESLCKRSKSENKL 261

Query: 236 ADGLRAFLGDLTWP--------IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAI 287
           ADG+      +  P         + +     I+V ++E   A+      +   VEP+ A+
Sbjct: 262 ADGIA-----IPEPPRKEEMLRALEESNGFCISVGEEETRAALHWLRR-MGFLVEPTSAV 315

Query: 288 GLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDL 320
            LAA       +    +   K+ + LSG  +  
Sbjct: 316 ALAAYWK--LLEEGLIEGGSKVLLPLSGSGLKN 346

Length = 347

>gnl|CDD|180539 PRK06352, PRK06352, threonine synthase; Validated

 Score = 69.3 bits (169), Expect = 3e-13
 Identities = 84/302 (27%), Positives = 128/302 (42%), Gaps = 27/302 (8%)

Query: 6   EKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASN 65
           EKY   +  + +    ISL    TP++    L+   G +L+ K E     G+FK RG   
Sbjct: 7   EKYKE-YLPVTDKTPMISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVM 65

Query: 66  AVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKC-KVENVVRYGGQ 124
           AV    E+ A + V+  S+GN +AA +  A   G+ AYIVIP+      K+   V YG  
Sbjct: 66  AVAKAKEEGA-EAVICASTGNTSAAAAAYATRAGLKAYIVIPEGKVALGKLAQAVMYGAD 124

Query: 125 VIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQV-PLLDTIIVP 183
           +I  +           ++ E     LV+  N  R + GQ T + E  EQ+    D + +P
Sbjct: 125 IISIQGNFDEALKSVRELAETEAVTLVNSVNPYR-LEGQKTAAFEICEQLGSAPDVLAIP 183

Query: 184 ISGGGLISGVALAAK-------SIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVA 236
           +   G IS      K       S  P +    AE       A +   G+ I      T+A
Sbjct: 184 VGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAE------GAAAIVQGKPID--NPETIA 235

Query: 237 DGLRAFLGD-LTWPIVRDLVDD----VITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAA 291
             +R  +G+  +W +     D+    + +V D EI+ A K       V +EP  A  LA 
Sbjct: 236 TAIR--IGNPASWGLAEAARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAG 293

Query: 292 VL 293
           V+
Sbjct: 294 VI 295

Length = 351

>gnl|CDD|232896 TIGR00260, thrC, threonine synthase

 Score = 67.8 bits (166), Expect = 9e-13
 Identities = 54/253 (21%), Positives = 101/253 (39%), Gaps = 18/253 (7%)

Query: 56  GAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCK 114
            +FK RG + A+    E      V+  S+GN  AA +  A   G+   I+ P       K
Sbjct: 52  LSFKDRGMAVALTKALELGN-DTVLCASTGNTGAAAAAYAGKAGVKVVILYPAGKISLGK 110

Query: 115 VENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYND--GRIISGQGTISLEFLE 172
           +   + Y  +V+  +      + +  ++  +  A+ ++  N    R+  GQ T + E +E
Sbjct: 111 LAQALGYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNSVNSIPYRL-EGQKTYAFEAVE 169

Query: 173 QVP--LLDTIIVPISGGGLISGV-----ALAAKSIKPAIRILAAEPIGANDAAQS-KAAG 224
           Q+     D ++VP+   G    +           +         +  GA D  ++   +G
Sbjct: 170 QLGWEAPDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESG 229

Query: 225 RIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVI----TVEDKEIIEAMKLCYEILKVA 280
           +   + +  T++  +        W    +L          V D+EI+EA+KL        
Sbjct: 230 QWEPIEDPATLSTAID-IGNPANWERALELFRRSNGNAEDVSDEEILEAIKLLAREEGYF 288

Query: 281 VEPSGAIGLAAVL 293
           VEP  A+ +AA+L
Sbjct: 289 VEPHSAVSVAALL 301

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model [Amino acid biosynthesis, Aspartate family]. Length = 328

>gnl|CDD|233287 TIGR01137, cysta_beta, cystathionine beta-synthase

 Score = 65.6 bits (160), Expect = 7e-12
 Identities = 69/255 (27%), Positives = 109/255 (42%), Gaps = 25/255 (9%)

Query: 26  IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---GVVTH 82
           I  TP++    ++      L  KCE F  GG+ K R A   +   +    +K    ++  
Sbjct: 9   IGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEP 68

Query: 83  SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRES--- 137
           +SGN    L+L A ++G    IV+P+     KV+ +   G +++   + A   S ES   
Sbjct: 69  TSGNTGIGLALVAAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIG 128

Query: 138 VASKVLEET-GAVLVHPY-NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVA 194
           VA +++ E  GA ++  Y N    ++       E LEQ    LD  +     GG I+G+A
Sbjct: 129 VAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPEILEQCEGKLDMFVAGAGTGGTITGIA 188

Query: 195 LAAKSIKPAIRILAAEPIGA--NDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV- 251
              K   P  RI+ A+P G+           GR    +E           +G    P V 
Sbjct: 189 RYLKESNPKCRIVGADPEGSILAQPENLNKTGRTPYKVEG----------IGYDFIPTVL 238

Query: 252 -RDLVDDVITVEDKE 265
            R +VD+ I  +DKE
Sbjct: 239 DRKVVDEWIKTDDKE 253

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven [Amino acid biosynthesis, Serine family]. Length = 454

>gnl|CDD|136018 PRK06721, PRK06721, threonine synthase; Reviewed

 Score = 62.8 bits (152), Expect = 4e-11
 Identities = 77/298 (25%), Positives = 126/298 (42%), Gaps = 26/298 (8%)

Query: 10  ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLS 69
           A++  + E    +SL    TP++    ++   G  L+ K E     G+FK RG   AV  
Sbjct: 10  ASYLPVNENTPDVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAK 69

Query: 70  LDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWS 128
             E+ + + ++  S+GN +A+ +  A   G+   IVIP+      K+   V YG ++I  
Sbjct: 70  AKEEGS-EAIICASTGNTSASAAAYAARLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISI 128

Query: 129 EATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLL-DTIIVPISGG 187
           E            +  E    LV+  N  R I GQ T + E  +Q+    D + +P+   
Sbjct: 129 EGNFDDALKAVRNIAAEEPITLVNSVNPYR-IEGQKTAAFEICDQLQRAPDVLAIPVGNA 187

Query: 188 GLIS----GVALAAKS---IKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR 240
           G I+    G     K     KP I    AE       A +   G +I   E  T+A  +R
Sbjct: 188 GNITAYWKGFCEYEKEKGYKKPRIHGFEAE------GAAAIVKGHVID--EPETIATAIR 239

Query: 241 AFLGD-LTWPIVRDLVD----DVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVL 293
             +G+  +W    +  +    ++  V D+EI+ A +L  +   V  EP     LA V+
Sbjct: 240 --IGNPASWSYAVEAAEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVM 295

Length = 352

>gnl|CDD|233286 TIGR01136, cysKM, cysteine synthase

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 56/261 (21%), Positives = 102/261 (39%), Gaps = 25/261 (9%)

Query: 22  ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG--- 78
           I   I  TP++    L       +  K E     G+ K R A + +   ++   +K    
Sbjct: 1   IEELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDT 60

Query: 79  VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRE 136
           ++  +SGN   AL++ A  +G    + +P+     + + +  YG ++I + A   M    
Sbjct: 61  IIEATSGNTGIALAMVAAAKGYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAI 120

Query: 137 SVASKVLEETGAVLV-----HPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLI 190
             A ++  ET   ++     +P N     +   T   E        +D  +  +  GG I
Sbjct: 121 DKAEELAAETNKYVMLDQFENPANPE---AHYKTTGPEIWRDTDGRIDHFVAGVGTGGTI 177

Query: 191 SGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPI 250
           +GV    K   P I+I+A EP  +   +  +     I  +    +   L           
Sbjct: 178 TGVGRYLKEQNPNIKIVAVEPAESPVLSGGEPGPHKIQGIGAGFIPKILD---------- 227

Query: 251 VRDLVDDVITVEDKEIIEAMK 271
              L+D+VITV D++ IE  +
Sbjct: 228 -LSLIDEVITVSDEDAIETAR 247

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff [Amino acid biosynthesis, Serine family]. Length = 299

>gnl|CDD|235789 PRK06381, PRK06381, threonine synthase; Validated

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 69/312 (22%), Positives = 124/312 (39%), Gaps = 34/312 (10%)

Query: 29  TPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH 87
           TP+L +  L    G R ++ K E     G  K R A   V          G+   + GN+
Sbjct: 16  TPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRA-MRLGYSGITVGTCGNY 74

Query: 88  AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI-----WSEATMHSRESVASKV 142
            A+++  A+L G+ A I IP++    +V+ + +YG ++I     + EA   SR+      
Sbjct: 75  GASIAYFARLYGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFAKENG 134

Query: 143 LEETGAVLVHPYNDGRIISGQGTISLEFLEQ---VPLLDTIIVPISGGGLISGVALAAKS 199
           + +     V+   D   I     I+ E  E    VP  D + VP+  G  ++G+    + 
Sbjct: 135 IYDANPGSVNSVVD---IEAYSAIAYEIYEALGDVP--DAVAVPVGNGTTLAGIYHGFRR 189

Query: 200 IKPAI------RILAAEPIGANDAAQSKAAGRI-ITLLETNTVAD--------GLRAFLG 244
           +          R++     G N   +S   G   +  LE + + +          R+F G
Sbjct: 190 LYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDG 249

Query: 245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQ 304
           D     + D         D E+++  +L   +  +   P+ A  LAA++   + K     
Sbjct: 250 DNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVK--YLKKNGVN 307

Query: 305 DSKKIGIVLSGG 316
           D   +  V++G 
Sbjct: 308 D--NVVAVITGR 317

Length = 319

>gnl|CDD|234409 TIGR03945, PLP_SbnA_fam, 2,3-diaminopropionate biosynthesis protein SbnA

 Score = 55.7 bits (135), Expect = 8e-09
 Identities = 59/271 (21%), Positives = 102/271 (37%), Gaps = 40/271 (14%)

Query: 26  IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG---VVTH 82
           I  TP++  E L   +   LF K E F  GG+ K R A   + +  +   I     ++  
Sbjct: 5   IGNTPLVKLERLFPDAPFRLFAKLEGFNPGGSIKDRPALYILEAAIKRGRITPGTTIIES 64

Query: 83  SSGNHAAALSLAAKLRGIPAYIVI-PKNAPKCKVENVVR-YGGQVIW---SEAT---MHS 134
           SSGN   AL++    +G+    V+ P  +P  +   ++R YG +V      + T   + +
Sbjct: 65  SSGNLGIALAMICAYKGLRFICVVDPNISP--QNLKLLRAYGAEVEKVTEPDETGGYLGT 122

Query: 135 R-ESVASKVLEETGAVLVHPYNDGR-IISGQGTISLEFLEQVPLLDTIIVPISGGGLISG 192
           R   V   +     A   + Y +     +       E     P LD + V +S  G + G
Sbjct: 123 RIARVRELLASIPDAYWPNQYANPDNPRAHYHGTGREIARAFPPLDYLFVGVSTTGTLMG 182

Query: 193 VALAAKSIKPAIRILAAEPIGANDAAQS-----KAAGRIITLLETNTVADGLRAFLGDLT 247
            +   +   P  +++A       DA  S         R I  L  + V + L        
Sbjct: 183 CSRRLRERGPNTKVIAV------DAVGSVIFGGPPGRRHIPGLGASVVPELLD------- 229

Query: 248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILK 278
                 L+DDV+ V + + +     C  + +
Sbjct: 230 ----ESLIDDVVHVPEYDTVAG---CRRLAR 253

Members of this family include SbnA, a protein of the staphyloferrin B biosynthesis operon of Staphylococcus aureus. SbnA and SbnB together appear to synthesize 2,3-diaminopropionate, a precursor of certain siderophores and other secondary metabolites. SbnA is a pyridoxal phosphate-dependent enzyme [Cellular processes, Biosynthesis of natural products]. Length = 304

>gnl|CDD|233288 TIGR01139, cysK, cysteine synthase A

 Score = 55.5 bits (134), Expect = 8e-09
 Identities = 61/259 (23%), Positives = 103/259 (39%), Gaps = 27/259 (10%)

Query: 22  ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---G 78
           IS  I  TP++    +   +   +F K E     G+ K R A N +   ++   +K    
Sbjct: 1   ISELIGNTPLVRLNRIEGCNAN-VFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKT 59

Query: 79  VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRE 136
           +V  +SGN   AL++ A  RG    + +P+     + + +  YG +++ +     M    
Sbjct: 60  IVEPTSGNTGIALAMVAAARGYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAI 119

Query: 137 SVASKVLEETGAVLV------HPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGL 189
           + A ++   T           +P N       + T   E        LD  +  +  GG 
Sbjct: 120 AKAEEIAASTPNSYFMLQQFENPANPE---IHRKTTGPEIWRDTDGKLDAFVAGVGTGGT 176

Query: 190 ISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWP 249
           I+GV    K  KP I+I+A EP  +   +  K     I  +    +   L          
Sbjct: 177 ITGVGEVLKEQKPNIKIVAVEPAESPVLSGGKPGPHKIQGIGAGFIPKNLN--------- 227

Query: 250 IVRDLVDDVITVEDKEIIE 268
             R ++D+VITV D+E IE
Sbjct: 228 --RSVIDEVITVSDEEAIE 244

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate [Amino acid biosynthesis, Serine family]. Length = 298

>gnl|CDD|235757 PRK06260, PRK06260, threonine synthase; Validated

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 73/295 (24%), Positives = 129/295 (43%), Gaps = 29/295 (9%)

Query: 20  KRISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG 78
           K +SL    TP+     L    G + L+ K E     G+FK RG +  V +   +  +K 
Sbjct: 59  KIVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGV-TKALELGVKT 117

Query: 79  VVTHSSGNHAAALSLAAKLRGIPAYIVIPK-NAPKCKVENVVRYGGQVIWSEATMHSRES 137
           V   S+GN +A+L+  A   G+  Y+++P       K+   + +G +V+  +        
Sbjct: 118 VACASTGNTSASLAAYAARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDGNFDDALD 177

Query: 138 VASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQ----VPLLDTIIVPISGGGLISGV 193
           +  ++ +E    L++  N  R+  GQ TI  E  +Q    VP  D +++P+   G IS +
Sbjct: 178 MVVELAKEGKIYLLNSINPFRL-EGQKTIGFEIADQLGWEVP--DRVVLPVGNAGNISAI 234

Query: 194 ALAAKSIK--------PAIRILAAEPIGANDAAQSKAAGR--IITLLETNTVADGLRAFL 243
               K +         P +  + AE  GA    ++   G+  I  +    TVA  +R  +
Sbjct: 235 WKGFKELVELGIIDKLPKMTGIQAE--GAAPIVEAIKKGKDEIEPVENPETVATAIR--I 290

Query: 244 GD-----LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVL 293
           G+          +R+       V D+EI++A KL      + VEP+ A  +A ++
Sbjct: 291 GNPVNAPKALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLI 345

Length = 397

>gnl|CDD|130808 TIGR01747, diampropi_NH3ly, diaminopropionate ammonia-lyase family

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 72/342 (21%), Positives = 136/342 (39%), Gaps = 59/342 (17%)

Query: 19  QKRISLYIHKTPVLSSET----LNSMSGR----SLFFKCECFQKG-GAFKFRGASNAV-- 67
           Q +++L  HK       T    L+ ++       +  K E  + G  AFK  G S A+  
Sbjct: 6   QAKLALAFHKKIPGYRPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQ 65

Query: 68  ------------LSLDE--DQAIKG------VVTHSSGNHAAALSLAAKLRGIPAYIVIP 107
                       LS +   + AI          T + GNH   ++ AA+  G  A + +P
Sbjct: 66  YLAEKLHLDIETLSFEHLKNDAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMP 125

Query: 108 KNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN-DGR------II 160
           K + + +VEN++  G +   ++        +A ++ ++ G V+V     +G       I+
Sbjct: 126 KGSAQERVENILNLGAECTITDMNYDDTVRLAMQMAQQHGWVVVQDTAWEGYEKIPTWIM 185

Query: 161 SGQGTISLEFLEQV-----PLLDTIIVPISGGGLISGVA--LAAKSIKPAIRILAAEPIG 213
            G  T++ E +EQ+          +++    G +  GV         +     +  EP  
Sbjct: 186 QGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDK 245

Query: 214 ANDAAQS--KAAGRIITLL-ETNTVADGLRAFLGD---LTWPIVRDLVDDVITVEDKEII 267
           A+   QS  K  G I+ +  +  T+  GL    G+   ++W I+R+     I+ +D    
Sbjct: 246 ADCLYQSAVKKDGDIVNVGGDMATIMAGLAC--GEPNPISWEILRNCTSQFISAQDSVAA 303

Query: 268 EAMKLCYEILK----VAVEPSGAIGLAAVLSDGFRKNPAWQD 305
           + M++          +    SGA+GL  + +     +P +Q 
Sbjct: 304 KGMRVLGAPYGGDPRIISGESGAVGLGLLAA--VMYHPQYQS 343

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase) [Energy metabolism, Other]. Length = 376

>gnl|CDD|236065 PRK07591, PRK07591, threonine synthase; Validated

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 50/214 (23%), Positives = 92/214 (42%), Gaps = 34/214 (15%)

Query: 83  SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKV 142
           S+GN A +++  A   G+ + + IP +    K+   + YG  ++  +        + S++
Sbjct: 144 STGNLANSVAAHAARAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCSEL 203

Query: 143 LEE---TGAVLVH--PYNDGRIISGQGTISLEFLEQV--PLLDTIIVPISGGGLISGVAL 195
             E    G V ++  PY       G  T+  E  EQ+   L D ++ P++ G L++ +  
Sbjct: 204 ANEHEGWGFVNINLRPY----YAEGSKTLGYEVAEQLGWRLPDQVVAPLASGSLLTKIDK 259

Query: 196 AAKSIK-------PAIRILAAEPIGANDAAQSKAAGR-IITLLETNTV---------ADG 238
             + +          +R+  A+  G +  AQ+   GR ++  ++ NT+         ADG
Sbjct: 260 GFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADG 319

Query: 239 LRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKL 272
             A        I R     +  V D+EIIE +KL
Sbjct: 320 PYAL------DIARRTGGAIEDVTDEEIIEGIKL 347

Length = 421

>gnl|CDD|178182 PLN02569, PLN02569, threonine synthase

 Score = 47.5 bits (113), Expect = 5e-06
 Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 24/152 (15%)

Query: 56  GAFKFRGASNAVLSLDE----DQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP 111
           G+FK  G +  V  ++      + + GV   S+G+ +AALS      GIP+ + +P +  
Sbjct: 163 GSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYCAAAGIPSIVFLPADKI 222

Query: 112 KCKVENVVR--YGGQVIWSEAT-----MHSRESVASKVLEETGAVLVHPYNDGRIISGQG 164
              +  +V+    G ++ S  T     M     +  +V  E    L +  N  R + GQ 
Sbjct: 223 --SIAQLVQPIANGALVLSIDTDFDGCMR----LIREVTAELPIYLANSLNSLR-LEGQK 275

Query: 165 TISLEFLEQ----VPLLDTIIVPISGGGLISG 192
           T ++E L+Q    VP  D +IVP    G I  
Sbjct: 276 TAAIEILQQFDWEVP--DWVIVPGGNLGNIYA 305

Length = 484

>gnl|CDD|182672 PRK10717, PRK10717, cysteine synthase A; Provisional

 Score = 43.7 bits (104), Expect = 6e-05
 Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 23/250 (9%)

Query: 37  LNSMS---GRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG---VVTHSSGNHAAA 90
           LN  S   G  +  K E    GG+ K R A N +   ++   +K    +V  ++GN    
Sbjct: 19  LNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIG 78

Query: 91  LSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVL 150
           L+L A  RG    IV+P+   + K + +   G +++   A  ++  +   K        L
Sbjct: 79  LALVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEEL 138

Query: 151 VHPYNDGRIISGQ-----------GTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAK 198
           V    +G I + Q            T   E  EQ    +D  +  +  GG ++GV+   K
Sbjct: 139 VASEPNGAIWANQFDNPANREAHYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLK 198

Query: 199 SIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDV 258
              P ++I+ A+P G+   +  K  G +    E +++ +G+    G +T  +    +DD 
Sbjct: 199 ETNPKVKIVLADPTGSALYSYYK-TGELKA--EGSSITEGIGQ--GRITANLEGAPIDDA 253

Query: 259 ITVEDKEIIE 268
           I + D+E + 
Sbjct: 254 IRIPDEEALS 263

Length = 330

>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 7/193 (3%)

Query: 26  IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKG---VVTH 82
           +  TP++  + +   +G  ++ K E     G+ K R A + ++  ++   IK    ++  
Sbjct: 6   VGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEA 65

Query: 83  SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS---EATMHSRESVA 139
           +SGN   AL++ A L+G    +++P N  + +   +  YG ++I     E    +R+   
Sbjct: 66  TSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLAL 125

Query: 140 SKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP-ISGGGLISGVALAAK 198
                  G +L    N     +   +   E  +Q     T  V  +   G I GV+   K
Sbjct: 126 ELANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTGGRITHFVSSMGTTGTIMGVSRFLK 185

Query: 199 SIKPAIRILAAEP 211
              P ++I+  +P
Sbjct: 186 EQNPPVQIVGLQP 198

CysM differs from CysK in that it can also use thiosulfate instead of sulfide, to produce cysteine thiosulfonate instead of cysteine. Alternate name: O-acetylserine (thiol)-lyase [Amino acid biosynthesis, Serine family]. Length = 290

>gnl|CDD|178171 PLN02556, PLN02556, cysteine synthase/L-3-cyanoalanine synthase

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 52/221 (23%), Positives = 91/221 (41%), Gaps = 18/221 (8%)

Query: 8   YAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAV 67
              +    K  +   S  I KTP++    +    G  +  K E FQ   + K R A    
Sbjct: 40  LPKDLPGTK-IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPA---- 94

Query: 68  LSLDEDQAIKGVVTH--------SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVV 119
           L++ ED   K ++T         +SGN   +L+  A ++G    + +P      +   + 
Sbjct: 95  LAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMILTMPSYTSLERRVTMR 154

Query: 120 RYGGQVIWSEAT--MHSRESVASKVLEET-GAVLVHPY-NDGRIISGQGTISLEFLEQ-V 174
            +G +++ ++ T  M      A ++LE T  A ++  + N         T   E  E  +
Sbjct: 155 AFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPEIWEDTL 214

Query: 175 PLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGAN 215
             +D  ++ I  GG +SGV    KS  P ++I   EP  +N
Sbjct: 215 GQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESN 255

Length = 368

>gnl|CDD|234245 TIGR03528, 2_3_DAP_am_ly, diaminopropionate ammonia-lyase

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 22/204 (10%)

Query: 80  VTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVA 139
           VT + GNH   ++ AA   G  + + +PK + + ++EN+   G +   ++        +A
Sbjct: 117 VTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQERLENIRAEGAECTITDLNYDDAVRLA 176

Query: 140 SKVLEETGAVLVHP-----YND--GRIISGQGTISLEFLEQ-----VPLLDTIIVPISGG 187
            K+ +E G V+V       Y      I+ G GT++LE LEQ     V     + +    G
Sbjct: 177 WKMAQENGWVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVG 236

Query: 188 GLISGVA--LAAKSIKPAIRILAAEPIGAN---DAAQSKAAGRIITLLETNTVADGLRAF 242
                V    A+   +     +  EP  A+    +A +          +  T+  GL   
Sbjct: 237 SFAGAVQGYFASVYGEERPITVIVEPDKADCIYRSAIADDGKPHFVTGDMATIMAGLAC- 295

Query: 243 LGD---LTWPIVRDLVDDVITVED 263
            G+   + W I+RD     I+  D
Sbjct: 296 -GEPNTIGWEILRDYASQFISCPD 318

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate. Length = 396

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
PLN02970	328	serine racemase	100.0
COG1171	347	IlvA Threonine dehydratase [Amino acid transport a	100.0
PRK08526	403	threonine dehydratase; Provisional	100.0
PRK07048	321	serine/threonine dehydratase; Validated	100.0
PRK08638	333	threonine dehydratase; Validated	100.0
PRK06382	406	threonine dehydratase; Provisional	100.0
PRK07476	322	eutB threonine dehydratase; Provisional	100.0
PRK08198	404	threonine dehydratase; Provisional	100.0
TIGR02991	317	ectoine_eutB ectoine utilization protein EutB. Mem	100.0
PRK06110	322	hypothetical protein; Provisional	100.0
PRK08639	420	threonine dehydratase; Validated	100.0
TIGR02079	409	THD1 threonine dehydratase. This model represents	100.0
PRK12483	521	threonine dehydratase; Reviewed	100.0
PRK06815	317	hypothetical protein; Provisional	100.0
PRK08813	349	threonine dehydratase; Provisional	100.0
PLN02550	591	threonine dehydratase	100.0
TIGR01124	499	ilvA_2Cterm threonine ammonia-lyase, biosynthetic,	100.0
PRK07334	403	threonine dehydratase; Provisional	100.0
PRK09224	504	threonine dehydratase; Reviewed	100.0
PRK06608	338	threonine dehydratase; Provisional	100.0
PRK08246	310	threonine dehydratase; Provisional	100.0
TIGR01127	380	ilvA_1Cterm threonine dehydratase, medium form. A	100.0
cd01562	304	Thr-dehyd Threonine dehydratase: The first step in	100.0
cd06448	316	L-Ser-dehyd Serine dehydratase is a pyridoxal phos	100.0
KOG1251	323	consensus Serine racemase [Signal transduction mec	100.0
KOG1250	457	consensus Threonine/serine dehydratases [Amino aci	100.0
PRK02991	441	D-serine dehydratase; Provisional	100.0
PRK08206	399	diaminopropionate ammonia-lyase; Provisional	100.0
PRK07591	421	threonine synthase; Validated	100.0
COG0031	300	CysK Cysteine synthase [Amino acid transport and m	100.0
PRK08197	394	threonine synthase; Validated	100.0
cd06447	404	D-Ser-dehyd D-Serine dehydratase is a pyridoxal ph	100.0
TIGR01747	376	diampropi_NH3ly diaminopropionate ammonia-lyase fa	100.0
PRK06260	397	threonine synthase; Validated	100.0
PLN02565	322	cysteine synthase	100.0
cd01563	324	Thr-synth_1 Threonine synthase is a pyridoxal phos	100.0
TIGR02035	431	D_Ser_am_lyase D-serine ammonia-lyase. This family	100.0
PLN02356	423	phosphateglycerate kinase	100.0
PRK06352	351	threonine synthase; Validated	100.0
PRK11761	296	cysM cysteine synthase B; Provisional	100.0
PLN03013	429	cysteine synthase	100.0
PRK10717	330	cysteine synthase A; Provisional	100.0
TIGR03528	396	2_3_DAP_am_ly diaminopropionate ammonia-lyase. Mem	100.0
PRK07409	353	threonine synthase; Validated	100.0
PRK06381	319	threonine synthase; Validated	100.0
TIGR01136	299	cysKM cysteine synthases. This model discriminates	100.0
PRK06450	338	threonine synthase; Validated	100.0
PRK06721	352	threonine synthase; Reviewed	100.0
PLN02569	484	threonine synthase	100.0
cd01561	291	CBS_like CBS_like: This subgroup includes Cystathi	100.0
PLN02556	368	cysteine synthase/L-3-cyanoalanine synthase	100.0
TIGR01138	290	cysM cysteine synthase B. Alternate name: O-acetyl	100.0
PRK08329	347	threonine synthase; Validated	100.0
PLN00011	323	cysteine synthase	100.0
TIGR01139	298	cysK cysteine synthase A. This model distinguishes	100.0
PRK05638	442	threonine synthase; Validated	100.0
TIGR00260	328	thrC threonine synthase. Involved in threonine bio	100.0
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	100.0
TIGR03844	398	cysteate_syn cysteate synthase. Members of this fa	100.0
TIGR00263	385	trpB tryptophan synthase, beta subunit. Tryptophan	100.0
PLN02618	410	tryptophan synthase, beta chain	100.0
PRK13028	402	tryptophan synthase subunit beta; Provisional	100.0
PRK04346	397	tryptophan synthase subunit beta; Validated	100.0
cd06446	365	Trp-synth_B Tryptophan synthase-beta: Trptophan sy	100.0
cd00640	244	Trp-synth-beta_II Tryptophan synthase beta superfa	100.0
PF00291	306	PALP: Pyridoxal-phosphate dependent enzyme; InterP	100.0
TIGR01415	419	trpB_rel pyridoxal-phosphate dependent TrpB-like e	100.0
KOG1252	362	consensus Cystathionine beta-synthase and related	100.0
PRK12391	427	tryptophan synthase subunit beta; Reviewed	100.0
PRK03910	331	D-cysteine desulfhydrase; Validated	100.0
PRK13803	610	bifunctional phosphoribosylanthranilate isomerase/	100.0
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	100.0
KOG1481	391	consensus Cysteine synthase [Amino acid transport	100.0
TIGR01275	311	ACC_deam_rel pyridoxal phosphate-dependent enzymes	100.0
PRK12390	337	1-aminocyclopropane-1-carboxylate deaminase; Provi	100.0
TIGR01274	337	ACC_deam 1-aminocyclopropane-1-carboxylate deamina	100.0
cd06449	307	ACCD Aminocyclopropane-1-carboxylate deaminase (AC	100.0
COG0498	411	ThrC Threonine synthase [Amino acid transport and	100.0
PRK14045	329	1-aminocyclopropane-1-carboxylate deaminase; Provi	100.0
PRK09225	462	threonine synthase; Validated	100.0
cd01560	460	Thr-synth_2 Threonine synthase catalyzes the final	100.0
COG0133	396	TrpB Tryptophan synthase beta chain [Amino acid tr	100.0
COG2515	323	Acd 1-aminocyclopropane-1-carboxylate deaminase [A	100.0
KOG1395	477	consensus Tryptophan synthase beta chain [Amino ac	100.0
COG1350	432	Predicted alternative tryptophan synthase beta-sub	100.0
COG3048	443	DsdA D-serine dehydratase [Amino acid transport an	99.94
KOG2616	266	consensus Pyridoxalphosphate-dependent enzyme/pred	96.41
PF03808	172	Glyco_tran_WecB: Glycosyl transferase WecB/TagA/Cp	94.33
cd06533	171	Glyco_transf_WecG_TagA The glycosyltransferase Wec	90.33
PRK10669	558	putative cation:proton antiport protein; Provision	86.07
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	85.61
PRK03562	621	glutathione-regulated potassium-efflux system prot	85.33
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	85.06
PRK03659	601	glutathione-regulated potassium-efflux system prot	84.82
TIGR00696	177	wecB_tagA_cpsF bacterial polymer biosynthesis prot	83.98
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	83.04
PF00764	388	Arginosuc_synth: Arginosuccinate synthase; InterPr	80.42

>PLN02970 serine racemase

Probab=100.00  E-value=9.6e-71  Score=507.13  Aligned_cols=327  Identities=76%  Similarity=1.184  Sum_probs=303.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEE
Q 020236            2 EANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT   81 (329)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~   81 (329)
                      |++.....++++++..++.++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++++.++||+
T Consensus         1 ~~~~~~~~~~~~~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~~~~vv~   80 (328)
T PLN02970          1 EAASEKYAADLSSIREARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQAEKGVVT   80 (328)
T ss_pred             CCCCcCCCcCHHHHHHHHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhcCCeEEE
Confidence            67778888999999999999999999999999999998889999999999999999999999999998876667788999


Q ss_pred             ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCccccc
Q 020236           82 HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIIS  161 (329)
Q Consensus        82 ~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~  161 (329)
                      +|+||||+|+|++|+.+|++|+||||+++++.|+++|+.+||+|+.++++++.+.+.+++++++++++|++||+|+..++
T Consensus        81 aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~la~~~g~~~~~~~~n~~~~~  160 (328)
T PLN02970         81 HSSGNHAAALALAAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPTVESREAVAARVQQETGAVLIHPYNDGRVIS  160 (328)
T ss_pred             ECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhh
Confidence            99999999999999999999999999999999999999999999999999999989999999888999999999999999


Q ss_pred             ccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCcccccccc
Q 020236          162 GQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA  241 (329)
Q Consensus       162 g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~  241 (329)
                      |++|+++||++|+++||+||+|+|+||+++|++++||+.+|.+|||+|||.++++++.++..|+....+...++++|+..
T Consensus       161 g~~t~g~Ei~~ql~~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi~Vep~~~~~~~~s~~~g~~~~~~~~~tia~gl~~  240 (328)
T PLN02970        161 GQGTIALEFLEQVPELDVIIVPISGGGLISGIALAAKAIKPSIKIIAAEPKGADDAAQSKAAGEIITLPVTNTIADGLRA  240 (328)
T ss_pred             ehHHHHHHHHHhccCCCEEEEeeCchHHHHHHHHHHHhcCCCCEEEEEEECCCcHHHHHHHcCCceeCCCCCCccccccC
Confidence            99999999999999999999999999999999999999999999999999999999999999987777777899999987


Q ss_pred             CCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCC-CCeEEEEeCCCCCCh
Q 020236          242 FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQD-SKKIGIVLSGGNVDL  320 (329)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~-~~~vv~v~tgg~~~~  320 (329)
                      .++...|+.+++.+|+++.|+|+|++++++++++++|+++||+||++++++++.. .+.+.+.+ +++||+++||||+|+
T Consensus       241 ~~~~~~~~~~~~~~d~~v~V~d~e~~~a~~~la~~~gi~ve~s~aa~laaa~~~~-~~~~~~~~~~~~vv~v~~Ggn~~~  319 (328)
T PLN02970        241 SLGDLTWPVVRDLVDDVITVDDKEIIEAMKLCYERLKVVVEPSGAIGLAAALSDS-FRSNPAWKGCKNVGIVLSGGNVDL  319 (328)
T ss_pred             CcCHHHHHHHHhhCCEEEEECHHHHHHHHHHHHHhcCcEEeHHHHHHHHHHHhCc-ccccccccCCCeEEEEECCCCCCH
Confidence            6666778888899999999999999999999999999999999999999988652 23333223 589999999999999


Q ss_pred             HHHHHhhhC
Q 020236          321 GVLWDSFRK  329 (329)
Q Consensus       321 ~~~~~~~~~  329 (329)
                      ++|++++.|
T Consensus       320 ~~~~~~~~~  328 (328)
T PLN02970        320 GVLWESFSK  328 (328)
T ss_pred             HHHHHHhhC
Confidence            999999986

>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.2e-70  Score=492.73  Aligned_cols=320  Identities=39%  Similarity=0.647  Sum_probs=301.3

Q ss_pred             CCCCCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchh-ccCCeEEEECC
Q 020236            6 EKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDED-QAIKGVVTHSS   84 (329)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~-~~~~~vv~~ss   84 (329)
                      +....+++++..++.++.+.+.+|||++++.|++.+|.+||+|+|++||+||||.||+++.++.+..+ .+.++||++|+
T Consensus         3 ~~~~~~~~~i~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~~~gViaaSa   82 (347)
T COG1171           3 PLLPVSLADILAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEERAAGVIAASA   82 (347)
T ss_pred             ccccccHHHHHHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhhcCceEEecC
Confidence            44557899999999999999999999999999999999999999999999999999999999998644 57788999999


Q ss_pred             chHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccC
Q 020236           85 GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQG  164 (329)
Q Consensus        85 GN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~  164 (329)
                      ||||.++|++|+++|++++||||..+|..|++..+.+||+|+.++.+++++.+.++++++++|+.|++|||+|+.++||+
T Consensus        83 GNHaQGvA~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~~dda~~~a~~~a~~~G~~~i~pfD~p~viAGQG  162 (347)
T COG1171          83 GNHAQGVAYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDNFDDAYAAAEELAEEEGLTFVPPFDDPDVIAGQG  162 (347)
T ss_pred             CcHHHHHHHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEEeCCCCCcceeeccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHhhCCC-CCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcC-CeeecCCCCccccccccC
Q 020236          165 TISLEFLEQVPL-LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAG-RIITLLETNTVADGLRAF  242 (329)
Q Consensus       165 t~~~Ei~~ql~~-~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g-~~~~~~~~~t~~~gl~~~  242 (329)
                      |++.||++|+++ ||+||||+|+||+++|++.++|...|.++||||||++++++++|++.| .+.......++++|+.+.
T Consensus       163 Ti~lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp~~a~~~~~Sl~~G~~~~~~~~~~tiaDG~av~  242 (347)
T COG1171         163 TIALEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVIGVEPEGAPSMYASLKAGKIVVVLPDVGTIADGLAVK  242 (347)
T ss_pred             HHHHHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEeeCCChHHHHHHHcCCceeecCCCCccccccccC
Confidence            999999999997 599999999999999999999999999999999999999999999999 455555699999999986


Q ss_pred             -CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChH
Q 020236          243 -LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLG  321 (329)
Q Consensus       243 -~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~  321 (329)
                       +++..|+++++++|+++.|+|+|+.++|+.+++++++++||++|+++||+++.  ..+.  .+++++++|+||||.|+.
T Consensus       243 ~~g~~tf~i~~~~vd~~v~V~e~ei~~am~~l~~~~~iI~EpaGAlalAal~~~--~~~~--~~g~~v~~ilSGgN~d~~  318 (347)
T COG1171         243 RPGDLTFEILRELVDDIVLVDEDEICAAMRDLFERTKIIAEPAGALALAALLAG--KIEP--LQGKTVVVILSGGNIDFE  318 (347)
T ss_pred             CCCHHHHHHHHHcCCcEEEECHHHHHHHHHHHHhcCCeeccccHHHHHHHHHhh--hhhh--cCCCeEEEEecCCCCCHH
Confidence             99999999999999999999999999999999999999999999999999987  3221  257779999999999999


Q ss_pred             HHHHhhhC
Q 020236          322 VLWDSFRK  329 (329)
Q Consensus       322 ~~~~~~~~  329 (329)
                      .+.+++++
T Consensus       319 ~~~~v~~~  326 (347)
T COG1171         319 RLAEVLER  326 (347)
T ss_pred             HHHHHHhc
Confidence            99998764

>PRK08526 threonine dehydratase; Provisional

Probab=100.00  E-value=2.3e-69  Score=508.19  Aligned_cols=317  Identities=37%  Similarity=0.588  Sum_probs=297.4

Q ss_pred             CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHH
Q 020236            9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA   88 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g   88 (329)
                      .+++++|.++++++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.++.+.++||++|+||||
T Consensus         1 ~~~~~~i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNhg   80 (403)
T PRK08526          1 MLELNKIYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQKQHGVIAASAGNHA   80 (403)
T ss_pred             CCCHHHHHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECccHHH
Confidence            36899999999999999999999999999998999999999999999999999999999988776667889999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchH
Q 020236           89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISL  168 (329)
Q Consensus        89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~  168 (329)
                      +++|++|+++|++|+||||+.+|..|++.++.+||+|+.++++++++.+.+++++++.+++|++||+|+..++||+|+++
T Consensus        81 ~avA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~~~~~a~~~a~~~a~~~g~~~v~p~~~~~~i~G~gtia~  160 (403)
T PRK08526         81 QGVAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDNYDEAYAFALEYAKENNLTFIHPFEDEEVMAGQGTIAL  160 (403)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEeeCCCCCHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999899999999999999999999999


Q ss_pred             HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236          169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT  247 (329)
Q Consensus       169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~  247 (329)
                      ||++|+++||+||+|+|+||+++|++.++|..+|.+|||||||.++++++.++..|++...+...++++|+... +++..
T Consensus       161 EI~eq~~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvigVep~~~~~~~~s~~~g~~~~~~~~~tiadgiav~~~~~~~  240 (403)
T PRK08526        161 EMLDEISDLDMVVVPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKIINSKSVRTIADGIAVRDASPIN  240 (403)
T ss_pred             HHHHhcCCCCEEEEecChHHHHHHHHHHHHHhCCCCEEEEEEECCCChHHHHHHcCCcccCCCCCceeccccCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999877667788999999874 67888


Q ss_pred             HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236          248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF  327 (329)
Q Consensus       248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~  327 (329)
                      |+.+.+++|+++.|+|+|+.+|++++++++|+++||++|+++|++++.  .  ..+.++++||+++||||+|.+.+.+++
T Consensus       241 ~~~~~~~vd~~v~V~d~ei~~A~~~l~~~~gi~ve~aga~~lAall~~--~--~~~~~~~~Vv~ilsGGnid~~~~~~i~  316 (403)
T PRK08526        241 LAIILECVDDFVQVDDEEIANAILFLLEKQKIVVEGAGAASVAALLHQ--K--IDLKKGKKIGVVLSGGNIDVQMLNIII  316 (403)
T ss_pred             HHHHHHhCCEEEEECHHHHHHHHHHHHHhcCcEeeHHHHHHHHHHHhC--c--cccccCCeEEEEECCCCCCHHHHHHHH
Confidence            888889999999999999999999999999999999999999999854  2  223367899999999999999999987


Q ss_pred             hC
Q 020236          328 RK  329 (329)
Q Consensus       328 ~~  329 (329)
                      ++
T Consensus       317 ~~  318 (403)
T PRK08526        317 EK  318 (403)
T ss_pred             HH
Confidence            64

>PRK07048 serine/threonine dehydratase; Validated

Probab=100.00  E-value=3e-68  Score=490.25  Aligned_cols=315  Identities=43%  Similarity=0.734  Sum_probs=294.0

Q ss_pred             CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHH
Q 020236            9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA   88 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g   88 (329)
                      ..+++++.++++++.+++++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++++.++|+++|+||||
T Consensus         5 ~~~~~~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g   84 (321)
T PRK07048          5 LPTYDDVAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQRRAGVVTFSSGNHA   84 (321)
T ss_pred             cCCHHHHHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhcCCcEEEeCCCHHH
Confidence            46799999999999999999999999999988889999999999999999999999999988655566789999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchH
Q 020236           89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISL  168 (329)
Q Consensus        89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~  168 (329)
                      +|+|++|+.+|++|++|||+..++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+|+.+++|++|+++
T Consensus        85 ~alA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~~~~~~~~a~~l~~~~g~~~~~~~~~~~~~~g~~t~~~  164 (321)
T PRK07048         85 QAIALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRYTEDREEIGRRLAEERGLTLIPPYDHPHVIAGQGTAAK  164 (321)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEECCCCCcchhhccchHHH
Confidence            99999999999999999999999999999999999999999988888889999999889999999999999999999999


Q ss_pred             HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236          169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT  247 (329)
Q Consensus       169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~  247 (329)
                      ||++|+++||+||+|+||||+++|++.++|+..|.++||+|||.++++++.++..|+....+...++++|+... ++...
T Consensus       165 EI~~q~~~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~g~~~~~~~~~~  244 (321)
T PRK07048        165 ELFEEVGPLDALFVCLGGGGLLSGCALAARALSPGCKVYGVEPEAGNDGQQSFRSGEIVHIDTPRTIADGAQTQHLGNYT  244 (321)
T ss_pred             HHHhhcCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEeeCCChhHHHHHHcCCcccCCCCCCcccccccCCccHHH
Confidence            99999999999999999999999999999999999999999999999999999999877666778999998754 66778


Q ss_pred             HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236          248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF  327 (329)
Q Consensus       248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~  327 (329)
                      ++.+.+++|+++.|+|+|+++++++|++++|+++||++|+++++++++  .++   .++++||+|+|||+++++.+.+++
T Consensus       245 ~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~eps~a~~laa~~~~--~~~---~~~~~vv~i~tGGn~~~~~~~~~~  319 (321)
T PRK07048        245 FPIIRRLVDDIVTVSDAELVDAMRFFAERMKIVVEPTGCLGAAAALRG--KVP---LKGKRVGVIISGGNVDLARFAALL  319 (321)
T ss_pred             HHHHHHhCCceEEECHHHHHHHHHHHHHhCCceeccHHHHHHHHHHhC--chh---cCCCeEEEEeCCCCCCHHHHHHHh
Confidence            888999999999999999999999999999999999999999999986  333   267899999999999999999987


Q ss_pred             h
Q 020236          328 R  328 (329)
Q Consensus       328 ~  328 (329)
                      .
T Consensus       320 ~  320 (321)
T PRK07048        320 S  320 (321)
T ss_pred             c
Confidence            4

>PRK08638 threonine dehydratase; Validated

Probab=100.00  E-value=1.3e-67  Score=486.01  Aligned_cols=317  Identities=40%  Similarity=0.600  Sum_probs=290.5

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA   89 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~   89 (329)
                      ++++++..+++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++.+.++|+++|+||||.
T Consensus         9 ~~~~~i~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~~SsGN~g~   88 (333)
T PRK08638          9 VAIDDIIEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEKRKGVVACSAGNHAQ   88 (333)
T ss_pred             CCHHHHHHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhcCCeEEEeCCcHHHH
Confidence            57899999999999999999999999999888899999999999999999999999999876655677899999999999


Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236           90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE  169 (329)
Q Consensus        90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E  169 (329)
                      |+|++|+.+|++|+||||++.++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++|+.++++|
T Consensus        89 alA~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~~~~~~g~~t~a~E  168 (333)
T PRK08638         89 GVALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDNFNDTIAKVEEIVEEEGRTFIPPYDDPKVIAGQGTIGLE  168 (333)
T ss_pred             HHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEEcCcCCCcchhccccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988899999999999999999999999


Q ss_pred             HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccH
Q 020236          170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTW  248 (329)
Q Consensus       170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~  248 (329)
                      |++|++++|+||+|+|+||+++|++.+||+.+|+++||+|||.+++++++++..|.+.......|+++|+... ++...+
T Consensus       169 i~~q~~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vigVep~g~~~~~~s~~~g~~~~~~~~~ti~~gl~~~~p~~~~~  248 (333)
T PRK08638        169 ILEDLWDVDTVIVPIGGGGLIAGIAVALKSINPTIHIIGVQSENVHGMAASFYAGEITTHRTTGTLADGCDVSRPGNLTY  248 (333)
T ss_pred             HHhhcCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHCCCcccCCCCCCeeccccCCCccHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887666667888888754 444556


Q ss_pred             HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236          249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~  328 (329)
                      +.+++++|+++.|+|+|++++++++++++|++++|++|+++|++...  ..+.. .++++||+|+||||+|++++.+++.
T Consensus       249 ~~~~~~~d~~v~Vsd~ea~~a~~~l~~~~gi~~e~sgA~~~Aa~~~~--~~~~~-~~~~~vv~v~~Ggn~~~~~~~~~~~  325 (333)
T PRK08638        249 EIVRELVDDIVLVSEDEIRNAMKDLIQRNKVVTEGAGALATAALLSG--KLDQY-IQNKKVVAIISGGNVDLSRVSQITG  325 (333)
T ss_pred             HHHHHhCCeEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHhC--Ccccc-cCCCcEEEEECCCCCCHHHHHHHHH
Confidence            67788999999999999999999999999999999999999998754  22221 2678999999999999999999875


Q ss_pred             C
Q 020236          329 K  329 (329)
Q Consensus       329 ~  329 (329)
                      +
T Consensus       326 ~  326 (333)
T PRK08638        326 H  326 (333)
T ss_pred             H
Confidence            3

>PRK06382 threonine dehydratase; Provisional

Probab=100.00  E-value=8.4e-68  Score=500.57  Aligned_cols=315  Identities=38%  Similarity=0.618  Sum_probs=293.0

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA   89 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~   89 (329)
                      ++++++..++.++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+....++||++|+||||.
T Consensus         7 ~~~~~i~~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~~~gvv~aSsGN~g~   86 (406)
T PRK06382          7 PSFDDILYAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDELRNGVITASAGNHAQ   86 (406)
T ss_pred             CCHHHHHHHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhccCCeEEEECCCHHHH
Confidence            48999999999999999999999999999999999999999999999999999999998886655567899999999999


Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236           90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE  169 (329)
Q Consensus        90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E  169 (329)
                      |+|++|+.+|++|+||||+..++.|++.++.+||+|+.++++++++.+.+++++++.+++|++||+|+.+++|++|+++|
T Consensus        87 a~A~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~~~~~a~~~a~~la~~~~~~~v~~~~~~~~i~g~~t~~~E  166 (406)
T PRK06382         87 GVAYAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRDYDEAHRYADKIAMDENRTFIEAFNDRWVISGQGTIGLE  166 (406)
T ss_pred             HHHHHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEecCccCChHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccH
Q 020236          170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTW  248 (329)
Q Consensus       170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~  248 (329)
                      |++|++.||+||+|+|+||+++|++.++|...|++|||||||.+++++++++..++....+..+|+++|+... ++...+
T Consensus       167 i~eq~~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vigVe~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~  246 (406)
T PRK06382        167 IMEDLPDLDQIIVPVGGGGLISGIALAAKHINPNVKIIGIESELSDSMKASLREGKIVAHTSGVSICDGISVKYPGDLTF  246 (406)
T ss_pred             HHHhcCCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCccccccCCCccHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887777778999999875 566677


Q ss_pred             HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236          249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~  328 (329)
                      +++++++|+++.|+|+|+.++++.+++++|+++||++|+++++++..  ...   .++++||+|+||||+|++.+.++++
T Consensus       247 ~~~~~~~d~~v~V~d~ei~~a~~~l~~~~gi~~epsga~~laal~~~--~~~---~~~~~Vv~i~sGGn~d~~~~~~~~~  321 (406)
T PRK06382        247 DIAKNYVDDIVTVTEESVSKAIYKLFEREKIVAEPSGAVGLAAIMEG--KVD---VKGKKVAIVVSGGNINPLLMSKIIY  321 (406)
T ss_pred             HHHHHcCCEEEEECHHHHHHHHHHHHHHcCceechHHHHHHHHHHhc--ccc---CCCCEEEEEeCCCCCCHHHHHHHHH
Confidence            88899999999999999999999999999999999999999988654  211   2578999999999999999998876


Q ss_pred             C
Q 020236          329 K  329 (329)
Q Consensus       329 ~  329 (329)
                      +
T Consensus       322 ~  322 (406)
T PRK06382        322 K  322 (406)
T ss_pred             H
Confidence            3

>PRK07476 eutB threonine dehydratase; Provisional

Probab=100.00  E-value=1.9e-67  Score=484.65  Aligned_cols=315  Identities=36%  Similarity=0.591  Sum_probs=289.6

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA   89 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~   89 (329)
                      ++++++.+++.++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++..++||++|+||||+
T Consensus         1 ~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~~gvv~aSsGN~g~   80 (322)
T PRK07476          1 VSLADIYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERARGVVTASTGNHGR   80 (322)
T ss_pred             CCHHHHHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhCCeEEEECCChHHH
Confidence            47899999999999999999999999999989999999999999999999999999999987766666799999999999


Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236           90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE  169 (329)
Q Consensus        90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E  169 (329)
                      |+|++|+.+|++|++|+|+.+++.|+++|+.+||+|+.++++++++.+.+++++++.+++|++||+||.+++|++++++|
T Consensus        81 alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~~~E  160 (322)
T PRK07476         81 ALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRSQDDAQAEVERLVREEGLTMVPPFDDPRIIAGQGTIGLE  160 (322)
T ss_pred             HHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCCCCCcceeechhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCC---Ccc
Q 020236          170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFL---GDL  246 (329)
Q Consensus       170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~---~~~  246 (329)
                      |++|++++|+||+|+|+||+++|++.+||...|++|||+|||.++++++.++..|.+...+...++++++..+.   +..
T Consensus       161 i~~Q~~~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~t~a~~l~~~~~~~~~~  240 (322)
T PRK07476        161 ILEALPDVATVLVPLSGGGLASGVAAAVKAIRPAIRVIGVSMERGAAMHASLAAGRPVQVEEVPTLADSLGGGIGLDNRY  240 (322)
T ss_pred             HHHhCcCCCEEEEEcChHHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCceeCCCCCCccccccccccCCcHH
Confidence            99999999999999999999999999999999999999999999999999999998777777789999886432   334


Q ss_pred             cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHh
Q 020236          247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDS  326 (329)
Q Consensus       247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~  326 (329)
                      .++.+++++|+++.|+|+|++++++++++++|+++||+++++++++++..+  +   ..+++||+++|||+.|.+.+.++
T Consensus       241 ~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~ve~a~a~~laal~~~~~--~---~~~~~Vvvi~tGg~~~~~~~~~~  315 (322)
T PRK07476        241 TFAMCRALLDDVVLLDEAEIAAGIRHAYREERLVVEGAGAVGIAALLAGKI--A---ARDGPIVVVVSGANIDMELHRRI  315 (322)
T ss_pred             HHHHHHhcCCeEEEECHHHHHHHHHHHHHhcCceEeChhHHHHHHHHhCCc--c---cCCCcEEEEECCCCCCHHHHHHH
Confidence            566777899999999999999999999999999999999999999985421  1   12489999999999999999998


Q ss_pred             hhC
Q 020236          327 FRK  329 (329)
Q Consensus       327 ~~~  329 (329)
                      +++
T Consensus       316 ~~~  318 (322)
T PRK07476        316 ING  318 (322)
T ss_pred             Hhh
Confidence            753

>PRK08198 threonine dehydratase; Provisional

Probab=100.00  E-value=1.7e-67  Score=499.71  Aligned_cols=314  Identities=44%  Similarity=0.695  Sum_probs=296.5

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA   89 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~   89 (329)
                      ++++++..+++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++++.++||++|+||||+
T Consensus         4 ~~~~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~   83 (404)
T PRK08198          4 LTLDDIEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEERARGVVAASAGNHAQ   83 (404)
T ss_pred             CCHHHHHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhcCCEEEEECCCHHHH
Confidence            78999999999999999999999999999989999999999999999999999999999987677788999999999999


Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236           90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE  169 (329)
Q Consensus        90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E  169 (329)
                      ++|++|+.+|++|+||||+.++..|+++++.+||+|+.++.+++++.+.+++++++.+++|++||+|+.+++||+|+|+|
T Consensus        84 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~g~~t~a~E  163 (404)
T PRK08198         84 GVAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDVYDEALAKAQELAEETGATFVHPFDDPDVIAGQGTIGLE  163 (404)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCCCCCccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988899999999999999999999999


Q ss_pred             HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccH
Q 020236          170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTW  248 (329)
Q Consensus       170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~  248 (329)
                      |++|++++|+||+|+||||+++|++.+||+.+|++|+|||||.++++++.+++.|++...+...++++|+... ++...+
T Consensus       164 I~~q~~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kiigVe~~~~~~~~~~~~~g~~~~~~~~~t~a~g~~v~~~~~~~~  243 (404)
T PRK08198        164 ILEDLPDVDTVVVPIGGGGLISGVATAVKALRPEVRVIGVQAEGAPAMPESLAAGRPVELESVDTIADGIAVKRPGDLTF  243 (404)
T ss_pred             HHHhCCCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCCEecCCCCccccccccCCcCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999887777788999999865 566778


Q ss_pred             HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236          249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~  328 (329)
                      +++++++|+++.|+|+|++++++++++++|+++||+||+++||+++.  .+   +.++++||+++|||+.|.+.+.++++
T Consensus       244 ~~~~~~~d~~v~V~d~e~~~a~~~l~~~~g~~~e~sga~~lAal~~~--~~---~~~~~~vv~vl~ggn~~~~~l~~ii~  318 (404)
T PRK08198        244 EIIRELVDDVVTVSDEEIARAILLLLERAKLVVEGAGAVSVAALLSG--KL---DVKGKKVVAVLSGGNIDVLLLSRVIE  318 (404)
T ss_pred             HHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEehHHHHHHHHHHhc--hh---hcCCCeEEEEECCCCCCHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999876  32   24689999999999999999998775

>TIGR02991 ectoine_eutB ectoine utilization protein EutB

Probab=100.00  E-value=3.5e-67  Score=481.03  Aligned_cols=313  Identities=33%  Similarity=0.546  Sum_probs=288.6

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA   89 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~   89 (329)
                      ++++++.++++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++.+.++|+++|+||||+
T Consensus         1 ~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~   80 (317)
T TIGR02991         1 VTLQDIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQRAAGVVAASTGNHGR   80 (317)
T ss_pred             CCHHHHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhccCCeEEEECCCHHHH
Confidence            47899999999999999999999999999888999999999999999999999999998875455567899999999999


Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236           90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE  169 (329)
Q Consensus        90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E  169 (329)
                      |+|++|+.+|++|++|||+..++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||++++|++|+++|
T Consensus        81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~~~g~~t~a~E  160 (317)
T TIGR02991        81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRSQDDAQEEVERLVADRGLTMLPPFDHPDIVAGQGTLGLE  160 (317)
T ss_pred             HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEeeCCCCChHHHhhHHHHHHH
Confidence            99999999999999999999999999999999999999999999998999999988899999999999999999999999


Q ss_pred             HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC---CCcc
Q 020236          170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF---LGDL  246 (329)
Q Consensus       170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~---~~~~  246 (329)
                      |++|++++|+||+|+|+||+++|++++||+.+|.++||+|||+++++++.++..|+....+..+++++|+..+   .+..
T Consensus       161 i~~q~~~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vigvep~~~~~~~~s~~~g~~~~~~~~~tia~~l~~g~~~~~~~  240 (317)
T TIGR02991       161 VVEQMPDLATVLVPLSGGGLASGVAMAVKAARPDTRVIGVSMERGAAMKASLQAGRPVLVAELPTLADSLGGGIGLDNRV  240 (317)
T ss_pred             HHHhCCCCCEEEEEcChhHHHHHHHHHHHHhCCCCEEEEEEECCchHHHHHHHcCCcccCCCCCChhhhhhhccCCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999877766778899988533   2345


Q ss_pred             cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHh
Q 020236          247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDS  326 (329)
Q Consensus       247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~  326 (329)
                      .++.+++++|+++.|+|+|+++++++|++++|+++||++|+++|++++.  .    +.++++||+|+||||.|.+.+.++
T Consensus       241 ~~~~~~~~vd~~v~V~d~e~~~a~~~l~~~~g~~ve~s~a~~~Aal~~~--~----~~~~~~vvvvltG~n~~~~~~~~~  314 (317)
T TIGR02991       241 TFAMCKALLDEIVLVSEAEIAAGIRHAYAEEREIVEGAGAVGIAALLAG--K----IKNPGPCAVIVSGRNIDMDLHKRI  314 (317)
T ss_pred             HHHHHHHhCCeEEEECHHHHHHHHHHHHHhCCcEEcchHHHHHHHHHcC--c----cccCCcEEEEeCCCCCCHHHHHHH
Confidence            6778889999999999999999999999999999999999999999854  1    224679999999999999999998


Q ss_pred             hh
Q 020236          327 FR  328 (329)
Q Consensus       327 ~~  328 (329)
                      +.
T Consensus       315 ~~  316 (317)
T TIGR02991       315 ID  316 (317)
T ss_pred             Hc
Confidence            74

Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.

>PRK06110 hypothetical protein; Provisional

Probab=100.00  E-value=6.4e-67  Score=481.11  Aligned_cols=314  Identities=27%  Similarity=0.401  Sum_probs=289.3

Q ss_pred             CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhc-cCCeEEEECCchH
Q 020236            9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ-AIKGVVTHSSGNH   87 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~-~~~~vv~~ssGN~   87 (329)
                      +++++++.+++.++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++ +.++|+++|+|||
T Consensus         2 ~~~~~~i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~~~vv~aSsGN~   81 (322)
T PRK06110          2 MFTLAELEAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRVRGVISATRGNH   81 (322)
T ss_pred             CCCHHHHHHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCCceEEEECCCHH
Confidence            468999999999999999999999999999988999999999999999999999999999886554 3567999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcch
Q 020236           88 AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTIS  167 (329)
Q Consensus        88 g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~  167 (329)
                      |+|+|++|+.+|++|+||||++.++.|+++++.+||+|+.++++++++.+.+++++++++++|++|| |+..++||.|++
T Consensus        82 g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~G~~t~~  160 (322)
T PRK06110         82 GQSVAFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGEDFQAAREEAARLAAERGLHMVPSF-HPDLVRGVATYA  160 (322)
T ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCCC-CChHHhccchHH
Confidence            9999999999999999999999999999999999999999999999999999999888899999998 567789999999


Q ss_pred             HHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcc
Q 020236          168 LEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDL  246 (329)
Q Consensus       168 ~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~  246 (329)
                      +||++|++++|+||+|+|+||+++|++.++|..+|++|||+|||.+++++++++..|+....+...++++|+... +++.
T Consensus       161 ~Ei~~q~~~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi~Vep~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  240 (322)
T PRK06110        161 LELFRAVPDLDVVYVPIGMGSGICGAIAARDALGLKTRIVGVVSAHAPAYALSFEAGRVVTTPVATTLADGMACRTPDPE  240 (322)
T ss_pred             HHHHhhCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEeeCCChHHHHHHHcCCcccCCCCCCcccccCCCCccHH
Confidence            999999999999999999999999999999999999999999999999999999999877666678999998764 4456


Q ss_pred             cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHh
Q 020236          247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDS  326 (329)
Q Consensus       247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~  326 (329)
                      .++++++++|+++.|+|+|++++++++++++|+++||+++++++++++.  .+.   .++++||+|+|||++|++.+.++
T Consensus       241 ~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~e~ssaa~laa~~~~--~~~---~~~~~Vv~i~tGgn~d~~~~~~~  315 (322)
T PRK06110        241 ALEVIRAGADRIVRVTDDEVAAAMRAYFTDTHNVAEGAGAAALAAALQE--RER---LAGKRVGLVLSGGNIDRAVFARV  315 (322)
T ss_pred             HHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEehHHHHHHHHHHhC--hhh---hCCCcEEEEECCCCCCHHHHHHH
Confidence            7888899999999999999999999999999999999999999999986  332   26789999999999999999987


Q ss_pred             hh
Q 020236          327 FR  328 (329)
Q Consensus       327 ~~  328 (329)
                      +.
T Consensus       316 ~~  317 (322)
T PRK06110        316 LA  317 (322)
T ss_pred             Hh
Confidence            64

>PRK08639 threonine dehydratase; Validated

Probab=100.00  E-value=7.1e-67  Score=495.91  Aligned_cols=315  Identities=33%  Similarity=0.560  Sum_probs=292.8

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA   89 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~   89 (329)
                      +++++|..+++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++.+.++|+++|+||||.
T Consensus         7 ~~~~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~~Vv~aSsGN~g~   86 (420)
T PRK08639          7 VSAKDIDKAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEELAAGVVCASAGNHAQ   86 (420)
T ss_pred             CCHHHHHHHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHH
Confidence            79999999999999999999999999999988999999999999999999999999999875554568899999999999


Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE---EEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcc
Q 020236           90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ---VIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTI  166 (329)
Q Consensus        90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~---v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~  166 (329)
                      ++|++|+.+|++|+||||+.+++.|++.++.+||+   |+..+.+++++.+.+.+++++.+++|++||+|+.+++|++|+
T Consensus        87 alA~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~~~~a~~~a~~~a~~~g~~~~~~~~~~~~~~G~~ti  166 (420)
T PRK08639         87 GVAYACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDTFDDSAAAAQEYAEETGATFIPPFDDPDVIAGQGTV  166 (420)
T ss_pred             HHHHHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcCHHHHHHHHHHHHHhcCCcccCCCCChhHhcchhHH
Confidence            99999999999999999999999999999999996   444567899999999999998899999999999999999999


Q ss_pred             hHHHHhhCCC---CCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-
Q 020236          167 SLEFLEQVPL---LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-  242 (329)
Q Consensus       167 ~~Ei~~ql~~---~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-  242 (329)
                      ++||++|++.   ||+||+|+|+||+++|++.++|..+|+++||||||.++++++.+++.|++...+...++++|+... 
T Consensus       167 g~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~gi~v~~  246 (420)
T PRK08639        167 AVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEPAGAASMKAALEAGKPVTLEKIDKFVDGAAVAR  246 (420)
T ss_pred             HHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCCCcHHHHHhCCCceeCCCCCCeecccccCC
Confidence            9999999984   999999999999999999999999999999999999999999999999988777888999999865 


Q ss_pred             CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHH
Q 020236          243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGV  322 (329)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~  322 (329)
                      ++...++++++++|+++.|+|+|+.++++++++++|+++||+||+++||+++.  .+.  + ++++||+++||||+|++.
T Consensus       247 ~g~~~~~~~~~~vd~~v~V~d~ei~~a~~~l~~~~gi~~e~sga~~lAal~~~--~~~--~-~~~~vv~v~sGgn~d~~~  321 (420)
T PRK08639        247 VGDLTFEILKDVVDDVVLVPEGAVCTTILELYNKEGIVAEPAGALSIAALELY--KDE--I-KGKTVVCVISGGNNDIER  321 (420)
T ss_pred             ccHHHHHHHHHhCCeEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhh--hhh--c-CCCeEEEEeCCCCCCHHH
Confidence            66778888899999999999999999999999999999999999999999875  332  2 678999999999999999


Q ss_pred             HHHhhhC
Q 020236          323 LWDSFRK  329 (329)
Q Consensus       323 ~~~~~~~  329 (329)
                      +.++++|
T Consensus       322 ~~~~~~~  328 (420)
T PRK08639        322 MPEIKER  328 (420)
T ss_pred             HHHHHHH
Confidence            9998764

>TIGR02079 THD1 threonine dehydratase

Probab=100.00  E-value=7.7e-67  Score=493.33  Aligned_cols=312  Identities=32%  Similarity=0.538  Sum_probs=289.2

Q ss_pred             HHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHH
Q 020236           13 SSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALS   92 (329)
Q Consensus        13 ~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A   92 (329)
                      ++|..+++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++.+.++||++|+||||.++|
T Consensus         1 ~~i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~~~gvv~aSsGN~g~a~A   80 (409)
T TIGR02079         1 QDIEAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQLAKGVVCASAGNHAQGFA   80 (409)
T ss_pred             ChHHHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhhCCEEEEECccHHHHHHH
Confidence            47889999999999999999999999989999999999999999999999999998865555567899999999999999


Q ss_pred             HHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCE---EEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236           93 LAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ---VIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE  169 (329)
Q Consensus        93 ~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~---v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E  169 (329)
                      ++|+++|++|+||||+.+++.|++.++.+||+   |+.++++++++.+.+++++++.+++|++||+||.+++|++|+++|
T Consensus        81 ~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~~~~~a~~~a~~~~~~~g~~~~~~~~~~~~~~g~~ti~~E  160 (409)
T TIGR02079        81 YACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDTFDQCAAAAREHVEDHGGTFIPPFDDPRIIEGQGTVAAE  160 (409)
T ss_pred             HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCHhHhhhhHHHHHH
Confidence            99999999999999999999999999999996   555677899999999999998899999999999999999999999


Q ss_pred             HHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236          170 FLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT  247 (329)
Q Consensus       170 i~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~  247 (329)
                      |++|++ .||+||+|+|+||+++|++.++|..+|+++||||||.++++++.+++.|++...+...++++|+... ++...
T Consensus       161 i~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vigVep~~~~~~~~s~~~g~~~~~~~~~t~a~g~~v~~~g~~~  240 (409)
T TIGR02079       161 ILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKIIGVEPEGAPSMKASLEAGEVVTLDKIDNFVDGAAVKRVGDLN  240 (409)
T ss_pred             HHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCceecCCCCCeeccccCCCCcHHH
Confidence            999998 5999999999999999999999999999999999999999999999999887777778999999875 66677


Q ss_pred             HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236          248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF  327 (329)
Q Consensus       248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~  327 (329)
                      |+.+.+++|+++.|+|+|+.++++++++++|+++||+||+++||+++.  .++   .++++||+|+||||+|++.+.+++
T Consensus       241 ~~~~~~~vd~vv~V~d~e~~~a~~~l~~~~gi~ve~agaa~lAa~~~~--~~~---~~~~~Vv~ilsGgn~d~~~~~~~~  315 (409)
T TIGR02079       241 FKALKDVPDEVTLVPEGAVCTTILDLYNLEGIVAEPAGALSIAALERL--GEE---IKGKTVVCVVSGGNNDIERTEEIR  315 (409)
T ss_pred             HHHHHHhCCcEEEECHHHHHHHHHHHHHhcCceecchHHHHHHHHHhh--hhh---cCCCeEEEEECCCCCCHHHHHHHH
Confidence            888899999999999999999999999999999999999999999876  332   268899999999999999999987


Q ss_pred             hC
Q 020236          328 RK  329 (329)
Q Consensus       328 ~~  329 (329)
                      +|
T Consensus       316 ~~  317 (409)
T TIGR02079       316 ER  317 (409)
T ss_pred             HH
Confidence            64

This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.

>PRK12483 threonine dehydratase; Reviewed

Probab=100.00  E-value=8.4e-67  Score=501.05  Aligned_cols=307  Identities=34%  Similarity=0.542  Sum_probs=287.8

Q ss_pred             HHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236           20 KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG   99 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G   99 (329)
                      .++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+..+.+.++||++|+||||.++|++|+.+|
T Consensus        29 ~~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~~~GVV~aSaGNha~gvA~aA~~lG  108 (521)
T PRK12483         29 ARVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQLARGVITASAGNHAQGVALAAARLG  108 (521)
T ss_pred             HHHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHhcCcEEEECCCHHHHHHHHHHHHhC
Confidence            36778999999999999999999999999999999999999999999998765556788999999999999999999999


Q ss_pred             CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCC
Q 020236          100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLD  178 (329)
Q Consensus       100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d  178 (329)
                      ++|+||||+.+|..|++.++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++||+|+++||++|++ .||
T Consensus       109 i~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~~d~a~~~A~~la~e~g~~~v~pfdd~~viaGqgTig~EI~eQ~~~~~D  188 (521)
T PRK12483        109 VKAVIVMPRTTPQLKVDGVRAHGGEVVLHGESFPDALAHALKLAEEEGLTFVPPFDDPDVIAGQGTVAMEILRQHPGPLD  188 (521)
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCeeeCCCCChHHHHHHHHHHHHHHHHhCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 599


Q ss_pred             EEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCc
Q 020236          179 TIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDD  257 (329)
Q Consensus       179 ~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~  257 (329)
                      +||+|+|+||+++|++.++|...|++|||||||.+++++..++..|++...+...++++|+... ++...|+++++++|+
T Consensus       189 ~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep~~a~~~~~sl~~g~~~~~~~~~t~adGiav~~~g~~~~~~~~~~vd~  268 (521)
T PRK12483        189 AIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEPDDSNCLQAALAAGERVVLGQVGLFADGVAVAQIGEHTFELCRHYVDE  268 (521)
T ss_pred             EEEEecCccHHHHHHHHHHHHhCCCCEEEEEEeCCCchhhHHHhcCCcccCCCCCceeceeccCCCCHHHHHHHHHhCCE
Confidence            9999999999999999999999999999999999999999999999988777888999999865 778889999999999


Q ss_pred             EEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhhC
Q 020236          258 VITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK  329 (329)
Q Consensus       258 ~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~~  329 (329)
                      ++.|+|+|+.++++++++++|+++||+||+++||++++  .+++.+ ++++||+|+||||+|++.+.+++++
T Consensus       269 vv~Vse~ei~~ai~~l~~~~~i~vEpagAaalAal~~~--~~~~~~-~g~~VV~IlsGgNid~~~l~~i~~r  337 (521)
T PRK12483        269 VVTVSTDELCAAIKDIYDDTRSITEPAGALAVAGIKKY--AEREGI-EGQTLVAIDSGANVNFDRLRHVAER  337 (521)
T ss_pred             EEEECHHHHHHHHHHHHHhCCcEEeHHHHHHHHHHHHH--HHhcCC-CCCEEEEEeCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999986  444333 5789999999999999999998764

>PRK06815 hypothetical protein; Provisional

Probab=100.00  E-value=3.4e-66  Score=475.30  Aligned_cols=311  Identities=37%  Similarity=0.586  Sum_probs=287.3

Q ss_pred             HHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHH
Q 020236           12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAAL   91 (329)
Q Consensus        12 ~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~   91 (329)
                      ++++.++++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++.+.++++++|+||||+|+
T Consensus         4 ~~~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~~~~vv~aSsGN~g~al   83 (317)
T PRK06815          4 FDAILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQRQQGVITASSGNHGQGV   83 (317)
T ss_pred             HHHHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhcCceEEEECCChHHHHH
Confidence            68999999999999999999999999988899999999999999999999999999977554456789999999999999


Q ss_pred             HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHH
Q 020236           92 SLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFL  171 (329)
Q Consensus        92 A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~  171 (329)
                      |++|+.+|++|++|||+..++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+|++.++|++++++||+
T Consensus        84 A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~a~Ei~  163 (317)
T PRK06815         84 ALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGDALNAELAARRAAEQQGKVYISPYNDPQVIAGQGTIGMELV  163 (317)
T ss_pred             HHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEecCCCChhhhcchhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             hhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC--CCcccHH
Q 020236          172 EQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF--LGDLTWP  249 (329)
Q Consensus       172 ~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~--~~~~~~~  249 (329)
                      +|+++||+||+|+|+||+++|++.+|+++.|+++||||||.++++++++++.|+..+.+..+++++|+...  ++...++
T Consensus       164 ~q~~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vigVep~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~  243 (317)
T PRK06815        164 EQQPDLDAVFVAVGGGGLISGIATYLKTLSPKTEIIGCWPANSPSLYTSLEAGEIVEVAEQPTLSDGTAGGVEPGAITFP  243 (317)
T ss_pred             HhcCCCCEEEEECcHHHHHHHHHHHHHHhCCCCEEEEEEeCCCCcHHHHHHCCCcccCCCCCChhhhhccCCcccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999877777777888888543  3344566


Q ss_pred             HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236          250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF  327 (329)
Q Consensus       250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~  327 (329)
                      .+.+++|+++.|+|+|++++++++++++|+++||+||+++++++++  .++   .++++||+|+|||+.+.+.+.+++
T Consensus       244 ~~~~~~~~~~~V~d~e~~~a~~~la~~~gi~vepssg~alaa~~~~--~~~---~~~~~vv~i~tG~~~~~~~~~~~~  316 (317)
T PRK06815        244 LCQQLIDQKVLVSEEEIKEAMRLIAETDRWLIEGAAGVALAAALKL--APR---YQGKKVAVVLCGKNIVLEKYLEAV  316 (317)
T ss_pred             HHHHhCCeEEEECHHHHHHHHHHHHHhcCCeEecHHHHHHHHHHhC--chh---cCCCcEEEEECCCCCCHHHHHHHh
Confidence            7789999999999999999999999999999999999999999987  433   257899999999999999998876

>PRK08813 threonine dehydratase; Provisional

Probab=100.00  E-value=4.5e-66  Score=474.37  Aligned_cols=307  Identities=32%  Similarity=0.484  Sum_probs=281.2

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEE
Q 020236            2 EANGEKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT   81 (329)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~   81 (329)
                      |.|..+..++++++.++++++.+++++|||++++.+      +||+|+|++|||||||||++.+++..+.+++..++||+
T Consensus        13 ~~~~~~~~~~~~~i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~~~VV~   86 (349)
T PRK08813         13 EPDVGDVAVSVADVLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDERPVIC   86 (349)
T ss_pred             CCCcccccCCHHHHHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCCCeEEE
Confidence            345555668899999999999999999999998765      49999999999999999999999999877666668999


Q ss_pred             ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCccccc
Q 020236           82 HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIIS  161 (329)
Q Consensus        82 ~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~  161 (329)
                      +|+||||.|+|++|+.+|++|+||||+++++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++
T Consensus        87 aSsGN~G~alA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~~~~a~~~a~~la~~~g~~~v~~~~np~~i~  166 (349)
T PRK08813         87 ASAGNHAQGVAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGNSYDEAYAFARELADQNGYRFLSAFDDPDVIA  166 (349)
T ss_pred             ECCCHHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEcCccCChHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999989999999999999999


Q ss_pred             ccCcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCcccccccc
Q 020236          162 GQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA  241 (329)
Q Consensus       162 g~~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~  241 (329)
                      ||+|+++||++|.  ||+||+|+|+||+++|++.++|+  +.++||+|||+++++++.++. |.....+...|+++|+..
T Consensus       167 G~~Tig~EI~e~~--pD~VvvpvGgGGliaGia~~lk~--~~~rVigVqpega~~~~~s~~-g~~~~~~~~~tiadgl~~  241 (349)
T PRK08813        167 GQGTVGIELAAHA--PDVVIVPIGGGGLASGVALALKS--QGVRVVGAQVEGVDSMARAIR-GDLREIAPVATLADGVKV  241 (349)
T ss_pred             HHHHHHHHHHcCC--CCEEEEEeCccHHHHHHHHHHhc--CCCEEEEEEECCCchHHHHHc-CCCcccCCCCceeccccc
Confidence            9999999999984  79999999999999999999995  579999999999999999998 665555566799999986


Q ss_pred             C-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCCh
Q 020236          242 F-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDL  320 (329)
Q Consensus       242 ~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~  320 (329)
                      . ++...+.+..+++|+++.|+|+|+.+++++|++++|+++||+||+++||++++         ++++|++|+||||.|.
T Consensus       242 ~~p~~~~~~i~~~~vd~vv~Vsd~ei~~a~~~l~~~~gl~vE~aga~alAa~~~~---------~~~~v~~vlsGgN~d~  312 (349)
T PRK08813        242 KIPGFLTRRLCSSLLDDVVIVREAELRETLVRLALEEHVIAEGAGALALAAGRRV---------SGKRKCAVVSGGNIDA  312 (349)
T ss_pred             CCcchhHHHHHHHhCCeEEEECHHHHHHHHHHHHHHcCcEEEEcHHHHHHHHHHh---------CCCCEEEEECCCCCCH
Confidence            5 56677888889999999999999999999999999999999999999998764         4578999999999999


Q ss_pred             HHHHHhhh
Q 020236          321 GVLWDSFR  328 (329)
Q Consensus       321 ~~~~~~~~  328 (329)
                      +.+.+++.
T Consensus       313 ~~~~~~~~  320 (349)
T PRK08813        313 TVLATLLS  320 (349)
T ss_pred             HHHHHHHH
Confidence            99998775

>PLN02550 threonine dehydratase

Probab=100.00  E-value=2.6e-66  Score=500.05  Aligned_cols=305  Identities=30%  Similarity=0.471  Sum_probs=287.5

Q ss_pred             HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI  100 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~  100 (329)
                      ++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|++.+++..+.++.+.++||++|+||||+++|++|+++|+
T Consensus       102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~~~GVV~aSaGNhAqgvA~aA~~lGi  181 (591)
T PLN02550        102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQLDKGVICSSAGNHAQGVALSAQRLGC  181 (591)
T ss_pred             hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHcCC
Confidence            56788999999999999999999999999999999999999999999988666677889999999999999999999999


Q ss_pred             CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCCE
Q 020236          101 PAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDT  179 (329)
Q Consensus       101 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d~  179 (329)
                      +|+||||+.++..|++.++.+||+|+.++.+++++.+.+++++++.+++|++||+||.+++||+|+|+||++|++ .+|+
T Consensus       182 ka~IvmP~~tp~~Kv~~~r~~GAeVvl~g~~~dea~~~A~~la~e~g~~fi~pfddp~viaGqgTig~EI~eQl~~~~D~  261 (591)
T PLN02550        182 DAVIAMPVTTPEIKWQSVERLGATVVLVGDSYDEAQAYAKQRALEEGRTFIPPFDHPDVIAGQGTVGMEIVRQHQGPLHA  261 (591)
T ss_pred             CEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEECCCCChHHHHHHHHHHHHHHHHcCCCCCE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 4999


Q ss_pred             EEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcE
Q 020236          180 IIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDV  258 (329)
Q Consensus       180 vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~  258 (329)
                      ||+|+|+||+++|++.++|..+|++|||||||.++++++.+++.|+++..+...++++|+... ++...++++++++|++
T Consensus       262 VvvpVGgGGLiaGia~~lK~l~p~vkVIGVEp~~a~~~~~s~~~G~~v~~~~~~tiAdGiav~~~G~~t~~i~~~~vD~v  341 (591)
T PLN02550        262 IFVPVGGGGLIAGIAAYVKRVRPEVKIIGVEPSDANAMALSLHHGERVMLDQVGGFADGVAVKEVGEETFRLCRELVDGV  341 (591)
T ss_pred             EEEEeChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCccccCCCCCccceeecCCCCHHHHHHHHhhCCEE
Confidence            999999999999999999999999999999999999999999999988888888999999975 7888999999999999


Q ss_pred             EEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236          259 ITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       259 ~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~  328 (329)
                      +.|+|+|+.+|++.+++++|+++||+||+++||++++  .+++.+ ++++||+|+||||+|++.+.++.+
T Consensus       342 V~Vsd~eI~~Ai~~l~e~~givvEpAGA~alAall~~--~~~~~~-~g~~Vv~vlsGgNid~~~l~~v~~  408 (591)
T PLN02550        342 VLVSRDAICASIKDMFEEKRSILEPAGALALAGAEAY--CKYYGL-KDENVVAITSGANMNFDRLRIVTE  408 (591)
T ss_pred             EEECHHHHHHHHHHHHHHCCCEEeHHHHHHHHHHHHH--HHhcCC-CCCeEEEEecCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999986  443334 678999999999999999998865

>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form

Probab=100.00  E-value=6.4e-66  Score=495.58  Aligned_cols=306  Identities=32%  Similarity=0.538  Sum_probs=288.8

Q ss_pred             HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI  100 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~  100 (329)
                      ++.+.+++|||+++++|++.+|.+||+|+|++||+||||+|++.+++..+.++.+.++||++|+||||.++|++|+++|+
T Consensus        10 ~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gVV~aSaGNha~~vA~aa~~~Gi   89 (499)
T TIGR01124        10 RVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQKARGVIAASAGNHAQGVAFSAARLGL   89 (499)
T ss_pred             HhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhcCCEEEEECCCHHHHHHHHHHHHcCC
Confidence            68899999999999999999999999999999999999999999999987666667889999999999999999999999


Q ss_pred             CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCCE
Q 020236          101 PAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDT  179 (329)
Q Consensus       101 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d~  179 (329)
                      +|+||||+.+|..|++.++.+||+|+.++.+++++.+.+++++++.+++|++||+||.+++|++|+|+||++|++ ++|+
T Consensus        90 ~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~~d~a~~~a~~la~~~g~~~i~p~~~~~~i~G~gtig~EI~~q~~~~~D~  169 (499)
T TIGR01124        90 KALIVMPETTPDIKVDAVRGFGGEVVLHGANFDDAKAKAIELSQEKGLTFIHPFDDPLVIAGQGTLALEILRQVANPLDA  169 (499)
T ss_pred             CEEEEECCCCCHHHHHHHHhCCCEEEEeCcCHHHHHHHHHHHHHhcCCEeeCCCCChHHHHhhHHHHHHHHHhCCCCCCE
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999998 7999


Q ss_pred             EEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcE
Q 020236          180 IIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDV  258 (329)
Q Consensus       180 vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~  258 (329)
                      ||+|+||||+++|++.++|..+|++|||||||.++++++.++..|++...+...++++|+... ++...|+++++++|++
T Consensus       170 vvvpvGgGGliaGia~~lk~~~p~~kVIgVep~~~~~~~~s~~~g~~~~~~~~~t~adgiav~~~g~~~~~~~~~~vd~v  249 (499)
T TIGR01124       170 VFVPVGGGGLAAGVAALIKQLMPEIKVIGVEPTDSDCMKQALDAGEPVDLDQVGLFADGVAVKRVGDETFRLCQQYLDDI  249 (499)
T ss_pred             EEEccCccHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCceeCCCCCCccCcccCCCccHHHHHHHHHhCCEE
Confidence            999999999999999999999999999999999999999999999988888889999999875 7788999999999999


Q ss_pred             EEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhhC
Q 020236          259 ITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK  329 (329)
Q Consensus       259 ~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~~  329 (329)
                      +.|+|+|+.+|++.+++++|+++||+||+++||++++  .+++.+ ++++||+|+||||+|++++.+++++
T Consensus       250 v~V~d~ei~~ai~~l~~~~gii~EpagA~~lAal~~~--~~~~~~-~~~~vv~i~sG~n~~~~~l~~~~~r  317 (499)
T TIGR01124       250 VTVDTDEVCAAIKDLFEDTRAVAEPAGALALAGLKKY--VALHGI-RGQTLVAILSGANMNFHRLRYVSER  317 (499)
T ss_pred             EEECHHHHHHHHHHHHHhcCcEEechHHHHHHHHHHh--hhhcCC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999987  444433 5789999999999999999998764

Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.

>PRK07334 threonine dehydratase; Provisional

Probab=100.00  E-value=2.2e-65  Score=483.98  Aligned_cols=313  Identities=39%  Similarity=0.612  Sum_probs=287.3

Q ss_pred             CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHH
Q 020236            9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA   88 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g   88 (329)
                      .++++++.++++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++.+.++|+++|+||||
T Consensus         4 ~~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~~~~vv~aSsGN~g   83 (403)
T PRK07334          4 MVTLADIRAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEERARGVIAMSAGNHA   83 (403)
T ss_pred             CcCHHHHHHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHhCCcEEEECCcHHH
Confidence            46899999999999999999999999999988899999999999999999999999999987666566789999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchH
Q 020236           89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISL  168 (329)
Q Consensus        89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~  168 (329)
                      +|+|++|+.+|++|+||||++.++.|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++||+|+++
T Consensus        84 ~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~g~~t~~~  163 (403)
T PRK07334         84 QGVAYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGETLDEARAHARELAEEEGLTFVHPYDDPAVIAGQGTVAL  163 (403)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECcCHHHHHHHHHHHHHhcCCEecCCCCCHHHHHhHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236          169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT  247 (329)
Q Consensus       169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~  247 (329)
                      ||++|+++||+||+|+|+||+++|++++||..+|++|||+|||.++++++.++..+..  ....+++++|++.+ ++...
T Consensus       164 Ei~~q~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi~ve~~~~~~~~~~~~~~~~--~~~~~~~~~gi~~~~~~~~~  241 (403)
T PRK07334        164 EMLEDAPDLDTLVVPIGGGGLISGMATAAKALKPDIEIIGVQTELYPSMYAAIKGVAL--PCGGSTIAEGIAVKQPGQLT  241 (403)
T ss_pred             HHHhcCCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHhCCCc--cCCCCCccceecCCCccHHH
Confidence            9999999999999999999999999999999999999999999999999988866432  12456888998864 45556


Q ss_pred             HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236          248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF  327 (329)
Q Consensus       248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~  327 (329)
                      +.+++.++|+++.|+|+|++++++.|++++|+++||+||++++|+++.  .+.   .++++||+++|||+.|.+.+++++
T Consensus       242 ~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~v~~s~a~~~aa~~~~--~~~---~~~~~vv~i~~ggn~d~~~l~~il  316 (403)
T PRK07334        242 LEIVRRLVDDILLVSEADIEQAVSLLLEIEKTVVEGAGAAGLAALLAY--PER---FRGRKVGLVLSGGNIDTRLLANVL  316 (403)
T ss_pred             HHHHHHhCCeEEEECHHHHHHHHHHHHHhcCCEEechHHHHHHHHHhC--chh---cCCCeEEEEECCCCCCHHHHHHHH
Confidence            677788999999999999999999999999999999999999999876  332   267899999999999999999887


Q ss_pred             h
Q 020236          328 R  328 (329)
Q Consensus       328 ~  328 (329)
                      +
T Consensus       317 ~  317 (403)
T PRK07334        317 L  317 (403)
T ss_pred             H
Confidence            5

>PRK09224 threonine dehydratase; Reviewed

Probab=100.00  E-value=2e-65  Score=494.18  Aligned_cols=307  Identities=34%  Similarity=0.558  Sum_probs=288.1

Q ss_pred             HHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236           20 KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG   99 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G   99 (329)
                      .++.+.+++|||+++++|++.+|.+||+|+|++|||||||+|+|.+++..+.++.+.++||++|+||||.++|++|+.+|
T Consensus        12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~~~gvV~aSaGNha~avA~aa~~lG   91 (504)
T PRK09224         12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQLARGVITASAGNHAQGVALSAARLG   91 (504)
T ss_pred             HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhcCCEEEEECcCHHHHHHHHHHHHcC
Confidence            37889999999999999999999999999999999999999999999998765556788999999999999999999999


Q ss_pred             CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCC-CC
Q 020236          100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPL-LD  178 (329)
Q Consensus       100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~-~d  178 (329)
                      ++|+||||+.+|..|++.++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++|++|+++||++|+++ ||
T Consensus        92 i~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~~~~~a~~~a~~l~~~~g~~~v~~f~~~~~i~G~gTi~~EI~~q~~~~~D  171 (504)
T PRK09224         92 IKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDSFDEAYAHAIELAEEEGLTFIHPFDDPDVIAGQGTIAMEILQQHPHPLD  171 (504)
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCCCCCcHHHHhHHHHHHHHHHhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999985 99


Q ss_pred             EEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCc
Q 020236          179 TIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDD  257 (329)
Q Consensus       179 ~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~  257 (329)
                      +||+|+||||+++|++.++|..+|++|||||||.++++++.+++.|++...+...++++|+... ++...|+++++++|+
T Consensus       172 ~vvvpvGgGGliaGia~~lk~~~p~~kVigVe~~~~~~~~~s~~~g~~~~~~~~~~~adg~av~~~g~~~~~~~~~~vd~  251 (504)
T PRK09224        172 AVFVPVGGGGLIAGVAAYIKQLRPEIKVIGVEPEDSACLKAALEAGERVDLPQVGLFADGVAVKRIGEETFRLCQEYVDD  251 (504)
T ss_pred             EEEEecChhHHHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHhcCCCccCCCCCcccCcccCCCccHHHHHHHHhcCCe
Confidence            9999999999999999999999999999999999999999999999988777888999999865 677889999999999


Q ss_pred             EEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhhC
Q 020236          258 VITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK  329 (329)
Q Consensus       258 ~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~~  329 (329)
                      ++.|+|+|+.+|++++++++|+++||+||+++||++++  .+++.+ ++++||+|+||||+|++.+.+++++
T Consensus       252 ~v~Vsd~ei~~a~~~l~~~~~~~~epagA~~lAal~~~--~~~~~~-~g~~vv~i~sG~n~~~~~l~~~~~r  320 (504)
T PRK09224        252 VITVDTDEICAAIKDVFEDTRSIAEPAGALALAGLKKY--VAQHGI-EGETLVAILSGANMNFDRLRYVAER  320 (504)
T ss_pred             EEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHh--hhhcCC-CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999986  444444 4789999999999999999998764

>PRK06608 threonine dehydratase; Provisional

Probab=100.00  E-value=5.8e-65  Score=469.21  Aligned_cols=313  Identities=38%  Similarity=0.567  Sum_probs=283.5

Q ss_pred             CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc-CCeEEEECCchH
Q 020236            9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA-IKGVVTHSSGNH   87 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~-~~~vv~~ssGN~   87 (329)
                      .+++++|.++++++.+.+++|||+++++|++.+|.+||+|+|++||+||||||++.+++.++.+++. .++|+++|+|||
T Consensus         4 ~~~~~~i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~~vv~~SsGN~   83 (338)
T PRK06608          4 LQNPQNIAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLPDKIVAYSTGNH   83 (338)
T ss_pred             CCCHHHHHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcCCeEEEECCCHH
Confidence            4689999999999999999999999999999999999999999999999999999999999866544 268999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcch
Q 020236           88 AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTIS  167 (329)
Q Consensus        88 g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~  167 (329)
                      |+++|++|+.+|++|++|||+..++.|+++++.+||+|+.++. .+++.+.+++ .+++++||++||+|+.+++|+++++
T Consensus        84 g~alA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~-~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~g~~t~a  161 (338)
T PRK06608         84 GQAVAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT-RQEAEEKAKE-DEEQGFYYIHPSDSDSTIAGAGTLC  161 (338)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC-HHHHHHHHHH-HHhCCCEEcCCCCCHHHhccHHHHH
Confidence            9999999999999999999999999999999999999999975 4677777777 6667899999999999999999999


Q ss_pred             HHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccccccC-CC
Q 020236          168 LEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADGLRAF-LG  244 (329)
Q Consensus       168 ~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~gl~~~-~~  244 (329)
                      +||++|++ +||+||+|+|+||+++|++.++|..+|.++||+|||.++++++.+++.|+..... ...++++|+..+ ++
T Consensus       162 ~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigVep~~~~~~~~s~~~g~~~~~~~~~~t~~~gl~~~~~~  241 (338)
T PRK06608        162 YEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLIGSEPLNANDAYLSLKNNKIYRLNYSPNTIADGLKTLSVS  241 (338)
T ss_pred             HHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEEEEeeCCChHHHHHHHcCCeEeCCCCCCCeecccCCCCCC
Confidence            99999998 8999999999999999999999999999999999999999999999999876554 457899999864 55


Q ss_pred             cccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHH
Q 020236          245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLW  324 (329)
Q Consensus       245 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~  324 (329)
                      ...|+.++. +|+++.|+|+|++++++++++++|+++||+||++++|++++  .++.  .++++||+|+|||++|...+.
T Consensus       242 ~~~~~~~~~-~d~~v~Vsd~e~~~a~~~l~~~~gi~vepssaa~laa~~~~--~~~~--~~~~~Vv~v~tgg~~d~~~~~  316 (338)
T PRK06608        242 ARTFEYLKK-LDDFYLVEEYEIYYWTAWLTHLLKVICEPSSAINMVAVVNW--LKTQ--SKPQKLLVILSGGNIDPILYN  316 (338)
T ss_pred             HHHHHHHHh-CCCEEEECHHHHHHHHHHHHHHcCcEEchHHHHHHHHHHhh--chhh--cCCCeEEEEeCCCccCHHHHH
Confidence            666776665 68999999999999999999999999999999999999986  4432  367899999999999999999


Q ss_pred             Hhhh
Q 020236          325 DSFR  328 (329)
Q Consensus       325 ~~~~  328 (329)
                      ++++
T Consensus       317 ~~~~  320 (338)
T PRK06608        317 ELWK  320 (338)
T ss_pred             HHHH
Confidence            8765

>PRK08246 threonine dehydratase; Provisional

Probab=100.00  E-value=5.2e-65  Score=465.56  Aligned_cols=305  Identities=34%  Similarity=0.515  Sum_probs=277.6

Q ss_pred             CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHH
Q 020236            9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA   88 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g   88 (329)
                      .+++++|.++++++.+.+++|||+++++++.. +.+||+|+|++|||||||||++.+++..+.+  +.++|+++|+||||
T Consensus         4 ~~~~~~i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~--~~~~vv~aSsGN~g   80 (310)
T PRK08246          4 MITRSDVRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV--PAAGVVAASGGNAG   80 (310)
T ss_pred             CCCHHHHHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc--cCCeEEEeCCCHHH
Confidence            57899999999999999999999999998765 7899999999999999999999999987643  56789999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchH
Q 020236           89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISL  168 (329)
Q Consensus        89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~  168 (329)
                      +|+|++|+.+|++|+||+|+..++.|+.+++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++|++|+++
T Consensus        81 ~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~g~~~~~~~~n~~~i~g~~t~~~  160 (310)
T PRK08246         81 LAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAEYADALEAAQAFAAETGALLCHAYDQPEVLAGAGTLGL  160 (310)
T ss_pred             HHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCCCHHHHHHHHHHHHHhcCCEeCCCCCChhhhcchHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988889999999999999999999999


Q ss_pred             HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236          169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT  247 (329)
Q Consensus       169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~  247 (329)
                      ||++|++.||+||+|+|+||+++|++.+|+.   .++|++|||.++++++.+++.|+....+...+..++++.+ ++...
T Consensus       161 Ei~eq~~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi~ve~~~~~~~~~s~~~g~~~~~~~~~~~~~~l~~~~~~~~~  237 (310)
T PRK08246        161 EIEEQAPGVDTVLVAVGGGGLIAGIAAWFEG---RARVVAVEPEGAPTLHAALAAGEPVDVPVSGIAADSLGARRVGEIA  237 (310)
T ss_pred             HHHHhcCCCCEEEEecCccHHHHHHHHHhcC---CCEEEEEeeCCChHHHHHHHcCCcccCCCCCceeccccCCCccHHH
Confidence            9999999999999999999999999999965   4899999999999999999999877665445555666654 66677


Q ss_pred             HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHH
Q 020236          248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVL  323 (329)
Q Consensus       248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~  323 (329)
                      |++.+++.|+++.|+|+|++++++++++++|+++||++|++++++++.  ..+  ..++++||+|+||||.|++++
T Consensus       238 ~~~~~~~~~~~~~Vsd~e~~~a~~~l~~~egi~~e~s~aa~lAa~~~~--~~~--~~~~~~vv~i~~g~n~d~~~~  309 (310)
T PRK08246        238 FALARAHVVTSVLVSDEAIIAARRALWEELRLAVEPGAATALAALLSG--AYV--PAPGERVAVVLCGANTDPATL  309 (310)
T ss_pred             HHHHHhcCCeEEEECHHHHHHHHHHHHHHcCceeehHHHHHHHHHHhC--Ccc--ccCCCeEEEEECCCCCChhhc
Confidence            888899999999999999999999999999999999999999999765  222  236789999999999998865

>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form

Probab=100.00  E-value=5.7e-65  Score=478.99  Aligned_cols=295  Identities=44%  Similarity=0.704  Sum_probs=277.4

Q ss_pred             CCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcC
Q 020236           29 TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPK  108 (329)
Q Consensus        29 TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~  108 (329)
                      |||+++++|++..|.+||+|+|++|||||||||++.+++..+.+++..++|+++|+||||.++|++|+++|++|++|||+
T Consensus         1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv~p~   80 (380)
T TIGR01127         1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQRGVVAASAGNHAQGVAYAAKKFGIKAVIVMPE   80 (380)
T ss_pred             CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            89999999999999999999999999999999999999999977766678999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEeCCCCh
Q 020236          109 NAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGG  188 (329)
Q Consensus       109 ~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~~GtGg  188 (329)
                      .++..|+++++.+||+|+.++.+++++.+.+++++++.+++|++||+|+..++|++|+++||++|+++||+||+|+||||
T Consensus        81 ~~~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~D~vv~~vG~Gg  160 (380)
T TIGR01127        81 SAPPSKVKATKSYGAEVILHGDDYDEAYAFATSLAEEEGRVFVHPFDDEFVMAGQGTIGLEIMEDIPDVDTVIVPVGGGG  160 (380)
T ss_pred             CCcHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEecCCCCChhhhhhhHHHHHHHHHhCCCCCEEEEEeChHH
Confidence            99999999999999999999999999999999999989999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHH
Q 020236          189 LISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEII  267 (329)
Q Consensus       189 ~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~  267 (329)
                      +++|++.++|...|++|||||||.++++++.++..|++.+.+...++++|+... ++...++++.+++|+++.|+|+|+.
T Consensus       161 ~~aGi~~~~k~~~p~~kvigVe~~~~~~~~~~~~~g~~~~~~~~~~~a~g~~~~~~~~~~~~~~~~~vd~~v~V~d~e~~  240 (380)
T TIGR01127       161 LISGVASAAKQINPNVKVIGVEAEGAPSMYESLREGKIKAVESVRTIADGIAVKKPGDLTFNIIKEYVDDVVTVDEEEIA  240 (380)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEEECCChHHHHHHHcCCceecCCCCCeecchhCCCccHHHHHHHHHhCCEEEEECHHHHH
Confidence            999999999999999999999999999999999999988877888999999864 5666777888999999999999999


Q ss_pred             HHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236          268 EAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       268 ~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~  328 (329)
                      +|+++|++++|+++||++|++++++++.  ...   .++++||+++||||+|.+.+..+++
T Consensus       241 ~a~~~l~~~~gi~~e~s~a~~laa~~~~--~~~---~~~~~vv~i~sGGn~d~d~l~~vi~  296 (380)
T TIGR01127       241 NAIYLLLERHKILAEGAGAAGVAALLEQ--KVD---VKGKKIAVVLSGGNIDLNLLNKIIE  296 (380)
T ss_pred             HHHHHHHHhcCeEechHHHHHHHHHHhC--ccc---cCCCeEEEEeCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999875  221   2678999999999999999998875

A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.

>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen

Probab=100.00  E-value=9.8e-65  Score=464.62  Aligned_cols=303  Identities=48%  Similarity=0.768  Sum_probs=280.4

Q ss_pred             HHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHH
Q 020236           12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAAL   91 (329)
Q Consensus        12 ~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~   91 (329)
                      +++|.++++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+++..++|+++|+||||+|+
T Consensus         1 ~~~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~~~~iv~~ssGN~g~al   80 (304)
T cd01562           1 LEDILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEERAKGVVAASAGNHAQGV   80 (304)
T ss_pred             ChHHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhcCCcEEEECCCHHHHHH
Confidence            47899999999999999999999999988899999999999999999999999999998766556789999999999999


Q ss_pred             HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHH
Q 020236           92 SLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFL  171 (329)
Q Consensus        92 A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~  171 (329)
                      |++|+.+|++|++|+|++.++.|+++|+.+||+|+.++++++++.+.+++++++.+++|++||+|+.++.|+.++++||+
T Consensus        81 A~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~la~~~~~~~~~~~~n~~~~~g~~~~~~Ei~  160 (304)
T cd01562          81 AYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGEDFDEAEAKARELAEEEGLTFIHPFDDPDVIAGQGTIGLEIL  160 (304)
T ss_pred             HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHHHHhcCCEEeCCCCCcchhccHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999989999999999999999999999999


Q ss_pred             hhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHH
Q 020236          172 EQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPI  250 (329)
Q Consensus       172 ~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~  250 (329)
                      +|++.||+||+|+|||||++|++++||..+|.+|||+|+|.++++++.++..|.....+...++++|++.. +....+.+
T Consensus       161 ~q~~~~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvigv~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~  240 (304)
T cd01562         161 EQVPDLDAVFVPVGGGGLIAGIATAVKALSPNTKVIGVEPEGAPAMAQSLAAGKPVTLPEVDTIADGLAVKRPGELTFEI  240 (304)
T ss_pred             HhcCCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEEEEEECCCchHHHHHHcCCcccCCCCCcccccccCCCchHHHHHH
Confidence            99988999999999999999999999999999999999999999999999888776655567888888764 34445667


Q ss_pred             HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCC
Q 020236          251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVD  319 (329)
Q Consensus       251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~  319 (329)
                      .+++.|.++.|+|+|+++++++|+++||+++||+||+++++++++  .+++   ++++||+++|||+.|
T Consensus       241 ~~~~~~~~~~v~d~e~~~a~~~l~~~eGi~~~pss~~a~a~~~~~--~~~~---~~~~vv~i~tGG~~~  304 (304)
T cd01562         241 IRKLVDDVVTVSEDEIAAAMLLLFEREKLVAEPAGALALAALLSG--KLDL---KGKKVVVVLSGGNID  304 (304)
T ss_pred             HHHhCCeEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHhC--cccc---CCCeEEEEecCCCCC
Confidence            788999999999999999999999999999999999999999987  4443   678999999999864

Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.

>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia

Probab=100.00  E-value=1.1e-64  Score=464.36  Aligned_cols=301  Identities=26%  Similarity=0.391  Sum_probs=274.7

Q ss_pred             CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc--CCeEEEECCchHHHHHHHHHHHcCCCEEEE
Q 020236           28 KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA--IKGVVTHSSGNHAAALSLAAKLRGIPAYIV  105 (329)
Q Consensus        28 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~--~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~  105 (329)
                      +|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++.  .++|+++|+||||.|+|++|+.+|++|++|
T Consensus         1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~iv   80 (316)
T cd06448           1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGLNECVHVVCSSGGNAGLAAAYAARKLGVPCTIV   80 (316)
T ss_pred             CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhcccCCeEEEeCCcHHHHHHHHHHHHcCCCEEEE
Confidence            699999999998889999999999999999999999999999876653  678999999999999999999999999999


Q ss_pred             EcCCCCHHHHHHHHHcCCEEEEECCC-HHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCCC---CCEE
Q 020236          106 IPKNAPKCKVENVVRYGGQVIWSEAT-MHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVPL---LDTI  180 (329)
Q Consensus       106 ~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~---~d~v  180 (329)
                      +|+..++.|+++|+.+||+|+.++++ ++++.+.+++++++. +++|++||+||.+++||.++++||++|++.   ||+|
T Consensus        81 ~p~~~~~~k~~~l~~~GA~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~~~D~v  160 (316)
T cd06448          81 VPESTKPRVVEKLRDEGATVVVHGKVWWEADNYLREELAENDPGPVYVHPFDDPLIWEGHSSMVDEIAQQLQSQEKVDAI  160 (316)
T ss_pred             ECCCCCHHHHHHHHHcCCEEEEECCchHHHHHHHHHHHHhccCCcEEeCCCCCchhhccccHHHHHHHHHccccCCCCEE
Confidence            99999999999999999999999988 777777888888775 899999999999999999999999999985   9999


Q ss_pred             EEeCCCChHHHHHHHHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcE
Q 020236          181 IVPISGGGLISGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDV  258 (329)
Q Consensus       181 v~~~GtGg~~~Gi~~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~  258 (329)
                      |+|+|+||+++|++.+|++.+ |++++|+|||.+++++..+++.|+....+..+|+++|++.+ +++..|+.+++..|++
T Consensus       161 v~~vG~Gg~~~Gv~~~~k~~~~~~~~ii~Vep~g~~~~~~~~~~g~~~~~~~~~t~a~glg~~~~~~~~~~~~~~~~~~~  240 (316)
T cd06448         161 VCSVGGGGLLNGIVQGLERNGWGDIPVVAVETEGAHSLNASLKAGKLVTLPKITSVATSLGAKTVSSQALEYAQEHNIKS  240 (316)
T ss_pred             EEEeCchHHHHHHHHHHHhcCCCCCEEEEEeeCCChHHHHHHHcCCcEecCCCCchhhccCCCCcCHHHHHHHHhcCCeE
Confidence            999999999999999999996 99999999999999999999999876666667999999876 5566788888889999


Q ss_pred             EEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccc---cccCCCCCCCCeEEEEeCCCCC-ChHHHHHhhh
Q 020236          259 ITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDG---FRKNPAWQDSKKIGIVLSGGNV-DLGVLWDSFR  328 (329)
Q Consensus       259 ~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~---~~~~~~~~~~~~vv~v~tgg~~-~~~~~~~~~~  328 (329)
                      +.|+|+|+++++++|++++|+++||+||++++|+++..   +.+++.+.++++||+++||||. |++.+.++++
T Consensus       241 v~Vsd~e~~~a~~~l~~~~gi~~~~ssaa~laa~~~~~~~~~~~~~~~~~~~~Vv~iltg~n~~~~~~~~~~~~  314 (316)
T cd06448         241 EVVSDRDAVQACLRFADDERILVEPACGAALAVVYSGKILDLQLEVLLTPLDNVVVVVCGGSNITLEQLKEYKK  314 (316)
T ss_pred             EEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHhCcchhhhcccccCCCCeEEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999998641   2333456689999999999997 9999999886

>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]

Probab=100.00  E-value=9e-65  Score=425.69  Aligned_cols=313  Identities=58%  Similarity=0.921  Sum_probs=299.5

Q ss_pred             CCCCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCch
Q 020236            7 KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGN   86 (329)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN   86 (329)
                      .+.++++|+++++.|+.+++..||++.++.|.+..|.+||+|+|++|-+||||.|+|.+.++.+..+++.+++++.||||
T Consensus         4 ~~~~t~~dv~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~~kgvithSSGN   83 (323)
T KOG1251|consen    4 KYKITYEDVRAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKRAKGVITHSSGN   83 (323)
T ss_pred             eecCCHHHHHHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhhcCceEeecCCc
Confidence            57899999999999999999999999999999999999999999999999999999999999887677889999999999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcc
Q 020236           87 HAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTI  166 (329)
Q Consensus        87 ~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~  166 (329)
                      ||.|+|++|+..|+|++|+||.++|..|+..++.||++|++++.+.+++.+.++++.++.+++.++||++|..+.|++|+
T Consensus        84 HaqAlalaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~~~sRE~va~~ltee~g~~~i~Py~~p~vIaGqgTi  163 (323)
T KOG1251|consen   84 HAQALALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPTVESRESVAKDLTEETGYYLIHPYNHPSVIAGQGTI  163 (323)
T ss_pred             HHHHHHHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCccchHHHHHHHHHHhcCcEEeCCCCCcceeeccchH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCc
Q 020236          167 SLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGD  245 (329)
Q Consensus       167 ~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~  245 (329)
                      +.|+++|.+..|.+|+|+|+||+++|++...+.+.|+++|++|||++.+.-.+++..|...+++.+.||++|.... +|+
T Consensus       164 A~ElleqVg~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy~veP~~a~d~~qsf~~g~I~~l~tp~TIADG~r~~~lG~  243 (323)
T KOG1251|consen  164 ALELLEQVGEIDALFVPVGGGGLLSGVALAAKSLKPSIEVYAVEPEAADDGQQSFLKGKIVHLDTPKTIADGVRTSHLGP  243 (323)
T ss_pred             HHHHHHhhCccceEEEeecCcchhhHHHHHHhccCCCcEEEEecCcccchHHHHHhcCCeEecCCchhhhhhhhhccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999987 999


Q ss_pred             ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHH
Q 020236          246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLW  324 (329)
Q Consensus       246 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~  324 (329)
                      ..|+++++++|++++|+|+|+.++++.++++-.+.+||+++.++||++....+     ...++|.+|+||||.|+..+.
T Consensus       244 ~t~pIir~~vddi~Tv~e~Ei~~~lk~~~ermK~~vEPTa~lgfAavl~~k~~-----~~~K~igIiLsGGNVD~~~~~  317 (323)
T KOG1251|consen  244 LTWPIIRDLVDDILTVSEDEIKEALKLIWERMKVVVEPTAALGFAAVLSHKFA-----LNIKRIGIILSGGNVDLNSWA  317 (323)
T ss_pred             cchHHHHHHhhhheeecHHHHHHHHHHHHHHHheeeccchhHHHHHHHhhhHH-----hccCceEEEEeCCcccccchh
Confidence            99999999999999999999999999999999999999999999999876322     136899999999999998743

>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]

Probab=100.00  E-value=1.5e-64  Score=450.81  Aligned_cols=313  Identities=39%  Similarity=0.594  Sum_probs=297.5

Q ss_pred             HHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHH
Q 020236           12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAAL   91 (329)
Q Consensus        12 ~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~   91 (329)
                      +.++..++.++.+.+-.|||.+...|++..|.++|+|+|++||+||||.||+.+++..+.+++++.+|+++|.||||.|+
T Consensus        50 ~~~~~~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~~~gViasSaGNha~a~  129 (457)
T KOG1250|consen   50 FYDISSAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQKKAGVIASSAGNHAQAA  129 (457)
T ss_pred             cchhhhhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhhcCceEEecCccHHHHH
Confidence            66777888899999999999999899999999999999999999999999999999998777779999999999999999


Q ss_pred             HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHH
Q 020236           92 SLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFL  171 (329)
Q Consensus        92 A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~  171 (329)
                      |++|+++|+|++||||..+|..|.+.++.+||+|+..+.+++++...+.++++++++.|++|||+|+.++|++|++.||.
T Consensus       130 Ayaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~~~deAk~~a~~lAke~gl~yI~pfDhP~I~aGqgTig~EIl  209 (457)
T KOG1250|consen  130 AYAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGEDWDEAKAFAKRLAKENGLTYIPPFDHPDIWAGQGTIGLEIL  209 (457)
T ss_pred             HHHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEecccHHHHHHHHHHHHHhcCceecCCCCCchhhcCcchHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCCCC-EEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHH
Q 020236          172 EQVPLLD-TIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWP  249 (329)
Q Consensus       172 ~ql~~~d-~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~  249 (329)
                      +|++.|| +|+||||+||+++|++.++|+..|.++|||||+.+|+++..+++.|+++..+...++++|++.. +|...++
T Consensus       210 ~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt~~a~~f~~sl~~g~~V~lp~i~s~AdglaV~~Vg~~tf~  289 (457)
T KOG1250|consen  210 EQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVETEGAHSFNASLKAGKPVTLPKITSLADGLAVKTVGENTFE  289 (457)
T ss_pred             HhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEeecCcHHHHHHHhcCCeeecccccchhcccccchhhHHHHH
Confidence            9999666 9999999999999999999999999999999999999999999999999999999999999986 9999999


Q ss_pred             HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236          250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~  328 (329)
                      ....+.|+++.|+|+|+..++.++.+.|..++||++|+++||.+..++  .  ..+++++|.+++|||++.+.+..+++
T Consensus       290 ~a~~~~d~vvvV~~~ei~aaI~~l~edek~vvEpAgaaaLaai~~~~~--~--~lk~~~vv~ilsG~n~~~~~L~~vie  364 (457)
T KOG1250|consen  290 LAQKLVDRVVVVEDDEIAAAILRLFEDEKMVVEPAGAAALAAIYSGKL--N--HLKGKKVVSILSGGNIDFDSLGRVIE  364 (457)
T ss_pred             HHHhcCceEEEeccHHHHHHHHHHHHhhhheeccchHHHHHHHHhccc--c--ccCCceEEeecccCCCCcccccceeE
Confidence            999999999999999999999999999999999999999999988732  2  23789999999999999999876543

>PRK02991 D-serine dehydratase; Provisional

Probab=100.00  E-value=4.6e-63  Score=467.57  Aligned_cols=327  Identities=18%  Similarity=0.214  Sum_probs=285.7

Q ss_pred             CCCCCCCCCCHHHHHHHHHHhccc----------------cCCCCCccchhhhhhcC--------CeEEEEecCCCC-CC
Q 020236            2 EANGEKYAANFSSIKEAQKRISLY----------------IHKTPVLSSETLNSMSG--------RSLFFKCECFQK-GG   56 (329)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~----------------i~~TPl~~~~~l~~~~g--------~~i~~K~E~~np-tG   56 (329)
                      |..-|...++++|+..+++++..+                +++|||++++.|++.+|        .+||+|+|++|| ||
T Consensus        33 ~~~~~~~~~~~~di~~A~~~i~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tG  112 (441)
T PRK02991         33 AEGLPYVGLTEADVQDAEARLKRFAPYLAKAFPETAATGGIIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISG  112 (441)
T ss_pred             hhccccCCCCHHHHHHHHHHHHhhhhhhhhhCccccccCCccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcC
Confidence            444566778999999999999987                89999999999988775        699999999999 99


Q ss_pred             ccchhhHHHHHhcCc-----hhcc--------------------CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC
Q 020236           57 AFKFRGASNAVLSLD-----EDQA--------------------IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP  111 (329)
Q Consensus        57 S~KdR~a~~~l~~a~-----~~~~--------------------~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~  111 (329)
                      |||||++.+++..+.     +.+.                    ..+||++|+||||.|+|++|+.+|++|+||||++++
T Consensus       113 SFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~  192 (441)
T PRK02991        113 SIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFRQFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADAR  192 (441)
T ss_pred             ChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhhhhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence            999999999987642     1211                    137999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCC----C-----CCEEE
Q 020236          112 KCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVP----L-----LDTII  181 (329)
Q Consensus       112 ~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~----~-----~d~vv  181 (329)
                      +.|++.++.+||+|+.++++++++.+.+++++++. +++|++++++++.++||+|+++||++|++    +     ||+||
T Consensus       193 ~~K~~~ir~~GAeVi~~~~~~~~a~~~A~~la~~~~~~~~~~~~~~~~~iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~Vv  272 (441)
T PRK02991        193 QWKKDKLRSHGVTVVEYEGDYGVAVEEGRKAAESDPNCYFIDDENSRTLFLGYAVAGLRLKAQLAEQGIVVDADHPLFVY  272 (441)
T ss_pred             HHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcCCeEeCCCCCchhHHHhHHHHHHHHHHHhhhccCccccCCCCEEE
Confidence            99999999999999999999999999999998875 68899999899999999999999999996    2     66899


Q ss_pred             EeCCCChHHHHHHHHHHHh-CCCCEEEEEecCCCchHHHHHHcCCeeecC------CCCccccccccC-CCcccHHHHhh
Q 020236          182 VPISGGGLISGVALAAKSI-KPAIRILAAEPIGANDAAQSKAAGRIITLL------ETNTVADGLRAF-LGDLTWPIVRD  253 (329)
Q Consensus       182 ~~~GtGg~~~Gi~~~~k~~-~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~------~~~t~~~gl~~~-~~~~~~~~~~~  253 (329)
                      +|+|+||+++|++.+||+. .|+++||+|||.++++++.++..|+....+      ...|+++|+.++ ++...|+++++
T Consensus       273 vpvGgGGliaGia~~lk~~~~~~~kVigVEp~ga~~~~~s~~~G~~~~~~~~~~g~~~~Tiadgl~~~~~~~~~~~~~~~  352 (441)
T PRK02991        273 LPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGLMTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMER  352 (441)
T ss_pred             EEeCccHHHHHHHHHHHHhcCCCCEEEEEecCCChHHHHHHhcCCCcceeccccCCCCcchhhhhcCCCcchhHHHHHHH
Confidence            9999999999999999997 688999999999999999999999754332      256899999986 67778999999


Q ss_pred             cCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccc----cccCCCCC---CCCeEEEEeCCC-CCChHHHHH
Q 020236          254 LVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDG----FRKNPAWQ---DSKKIGIVLSGG-NVDLGVLWD  325 (329)
Q Consensus       254 ~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~----~~~~~~~~---~~~~vv~v~tgg-~~~~~~~~~  325 (329)
                      ++|+++.|+|+|+.++++.|++++|+++||+||+++|+++++.    +.++..++   ++++||++.||| .++.+.+.+
T Consensus       353 ~vd~~v~VsD~ei~~a~~~L~~~~gi~vEpS~AaalAa~~~l~~~~~~~~~~~l~~~~~~~~vv~~~~gg~~~~~~~~~~  432 (441)
T PRK02991        353 LLDGVYTVSDETLYRLLGLLADTEGIRLEPSALAGMAGPVRVCASVAYLQRHGLSEQLKNATHLVWATGGSMVPEEEMEQ  432 (441)
T ss_pred             hCCeEEEECHHHHHHHHHHHHHhcCceeeHHHHHHHHHHHHHHhCHHHHHHcCCccccCCCEEEEEECCCCCCCHHHHHH
Confidence            9999999999999999999999999999999999999997641    11111233   579999999998 568888877


Q ss_pred             hhh
Q 020236          326 SFR  328 (329)
Q Consensus       326 ~~~  328 (329)
                      .+.
T Consensus       433 ~~~  435 (441)
T PRK02991        433 YLA  435 (441)
T ss_pred             HHH
Confidence            765

>PRK08206 diaminopropionate ammonia-lyase; Provisional

Probab=100.00  E-value=2.5e-62  Score=460.83  Aligned_cols=320  Identities=23%  Similarity=0.288  Sum_probs=284.2

Q ss_pred             CCCHHHHHHHHHHh--ccccCCCCCccchhhhhhcC-CeEEEEecCC-CCCCccchhhHHHHHhcCchhccC--------
Q 020236            9 AANFSSIKEAQKRI--SLYIHKTPVLSSETLNSMSG-RSLFFKCECF-QKGGAFKFRGASNAVLSLDEDQAI--------   76 (329)
Q Consensus         9 ~~~~~~~~~~~~~~--~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~-nptGS~KdR~a~~~l~~a~~~~~~--------   76 (329)
                      .++++++..+++++  .+.+++|||+++++|++.+| .+||+|+|++ |||||||||++.+.+..+..+...        
T Consensus        23 ~~~~~~~~~a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~  102 (399)
T PRK08206         23 LLSQEEAKKARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSF  102 (399)
T ss_pred             cCCHHHHHHHHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCH
Confidence            47899999999999  66999999999999999999 6999999997 599999999999888776432211        


Q ss_pred             --------------CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHH
Q 020236           77 --------------KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKV  142 (329)
Q Consensus        77 --------------~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~  142 (329)
                                    .+|+++|+||||+|+|++|+.+|++|+||||+.+++.|+..|+.+||+|+.++++++++.+.++++
T Consensus       103 ~~l~~~~~~~~~~~~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~~~~~~~~a~~~  182 (399)
T PRK08206        103 EELTSGEVREKLGDITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGNYDDSVRLAAQE  182 (399)
T ss_pred             HHhhhhHHHHhccCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCHHHHHHHHHHH
Confidence                          159999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCEeeC-----CCCC--cccccccCcchHHHHhhCCC----CCEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEE
Q 020236          143 LEETGAVLVH-----PYND--GRIISGQGTISLEFLEQVPL----LDTIIVPISGGGLISGVALAAKSIK--PAIRILAA  209 (329)
Q Consensus       143 ~~~~~~~~~~-----~~~n--~~~~~g~~t~~~Ei~~ql~~----~d~vv~~~GtGg~~~Gi~~~~k~~~--~~~~vi~v  209 (329)
                      +++.+++|++     ||+|  ++.++||.|+++||++|++.    ||+||+|+|+||+++|++.++++++  +.+++|+|
T Consensus       183 ~~~~g~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii~V  262 (399)
T PRK08206        183 AQENGWVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFVVV  262 (399)
T ss_pred             HHHcCCEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEEEE
Confidence            8888999887     6765  66899999999999999974    9999999999999999999999984  47999999


Q ss_pred             ecCCCchHHHHHHcCCeeecCC-CCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHH----HcCceeCc
Q 020236          210 EPIGANDAAQSKAAGRIITLLE-TNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYE----ILKVAVEP  283 (329)
Q Consensus       210 ~~~~~~~~~~~~~~g~~~~~~~-~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~----~egi~~~p  283 (329)
                      ||.+++++++++..|++...+. ..|+++|+.++ ++...++++++.+|+++.|+|+|+++++++|++    ++|+++||
T Consensus       263 ep~gs~~l~~s~~~g~~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~gi~vep  342 (399)
T PRK08206        263 EPDQADCLYQSAVDGKPVAVTGDMDTIMAGLACGEPNPLAWEILRNCADAFISCPDEVAALGMRILANPLGGDPPIVSGE  342 (399)
T ss_pred             CCCCCchHHHHHHcCCcEEeCCCCCceeccCCCCCcCHHHHHHHHHhCCEEEEECHHHHHHHHHHHhcccCCCCCeeecc
Confidence            9999999999999998776653 46899999765 556778888999999999999999999999996    78999999


Q ss_pred             chHHHHHHHhccc-------cccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236          284 SGAIGLAAVLSDG-------FRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       284 ssa~alaa~~~~~-------~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~  328 (329)
                      +||++++|++++.       +.+++.+.++++||+|+|||++|++.+.+++.
T Consensus       343 sgAa~lAa~~~~~~~~~~~~~~~~~~i~~~~~Vv~iltgG~~d~~~~~~~~~  394 (399)
T PRK08206        343 SGAVGLGALAALMTDPDYQELREKLGLDEDSRVLLISTEGDTDPDRYREIVW  394 (399)
T ss_pred             hHHHHHHHHHHHHhcchhhHHHHhcCCCCCCEEEEEECCCCCCHHHHHHHhc
Confidence            9999999998651       12225566789999999999999999998774

>PRK07591 threonine synthase; Validated

Probab=100.00  E-value=5.6e-62  Score=461.84  Aligned_cols=303  Identities=22%  Similarity=0.295  Sum_probs=274.9

Q ss_pred             hccccCCCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236           22 ISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI  100 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~  100 (329)
                      +....|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..+.+ .+.++|+++|+||||+|+|++|+++|+
T Consensus        83 v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~-~g~~~vv~aSsGN~g~alA~~aa~~Gl  161 (421)
T PRK07591         83 VDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARE-LGFTTVACASTGNLANSVAAHAARAGL  161 (421)
T ss_pred             CcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHH-cCCCEEEEeCCCHHHHHHHHHHHHcCC
Confidence            445678999999999999999 599999999999999999999999998854 466889999999999999999999999


Q ss_pred             CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCC-C-C
Q 020236          101 PAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVP-L-L  177 (329)
Q Consensus       101 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~-~  177 (329)
                      +|+||+|+++++.|+.+++.+||+|+.++++++++.+.+++++++. +++++|++.||+.++|++|+++||++|++ + |
T Consensus       162 ~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~~d~a~~~a~~~~~~~~~~~~~n~~~~p~~ieG~~Tia~Ei~eQl~~~~p  241 (421)
T PRK07591        162 DSCVFIPADLEAGKIVGTLVYGPTLVAVDGNYDDVNRLCSELANEHEGWGFVNINLRPYYAEGSKTLGYEVAEQLGWRLP  241 (421)
T ss_pred             CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEEEecCCCCcccccchHHHHHHHHHHcCCCCC
Confidence            9999999999999999999999999999999999999999998886 89999998899999999999999999997 4 9


Q ss_pred             CEEEEeCCCChHHHHHHHHHHHh-------CCCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccccccC---CCcc
Q 020236          178 DTIIVPISGGGLISGVALAAKSI-------KPAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADGLRAF---LGDL  246 (329)
Q Consensus       178 d~vv~~~GtGg~~~Gi~~~~k~~-------~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~gl~~~---~~~~  246 (329)
                      |+||+|+|+||+++|++.+|+++       .+.+|||+|||+++++++++++.|.....+ ...++++++..+   .+..
T Consensus       242 D~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii~Vq~~g~~~~~~~~~~g~~~~~~~~~~tia~~l~~~~p~~~~~  321 (421)
T PRK07591        242 DQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVFGAQAEGCSPIAQAFKEGRDVVKPVKPNTIAKSLAIGNPADGPY  321 (421)
T ss_pred             CEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEEEEecCCCCHHHHHHHcCCCcccCCCCCchhhheecCCCCCcHH
Confidence            99999999999999999999998       578999999999999999999988654332 367899998754   2345


Q ss_pred             cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHH
Q 020236          247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWD  325 (329)
Q Consensus       247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~  325 (329)
                      .++.++++.+.++.|+|+|+++++++|++++|+++||+||+++|+++++  .+++.+.++++||+++|| |++|++.+.+
T Consensus       322 ~~~~i~~~~g~~v~Vsd~ei~~a~~~la~~eGi~~epssaaalAal~~l--~~~g~i~~~~~VV~i~tG~G~kd~~~~~~  399 (421)
T PRK07591        322 ALDIARRTGGAIEDVTDEEIIEGIKLLARTEGIFTETAGGVTVAVLKKL--VEAGKIDPDEETVVYITGNGLKTLEAVAG  399 (421)
T ss_pred             HHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCeeecchHHHHHHHHHHH--HHhCCCCCCCeEEEEeCCCccCCHHHHHH
Confidence            6788899999999999999999999999999999999999999999987  676777789999999999 9999998876


Q ss_pred             hh
Q 020236          326 SF  327 (329)
Q Consensus       326 ~~  327 (329)
                      .+
T Consensus       400 ~~  401 (421)
T PRK07591        400 YV  401 (421)
T ss_pred             hc
Confidence            54

>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-62  Score=432.99  Aligned_cols=285  Identities=26%  Similarity=0.323  Sum_probs=249.2

Q ss_pred             HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHH
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKL   97 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~   97 (329)
                      ++.+.+|+|||++++++....+++||+|+|++||+||.|||.+.+|+.+|++++.   ..+||++||||+|+++|+.|+.
T Consensus         4 ~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG~tIVE~TSGNTGI~LA~vaa~   83 (300)
T COG0031           4 SILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPGGTIVEATSGNTGIALAMVAAA   83 (300)
T ss_pred             chHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCCCEEEEcCCChHHHHHHHHHHH
Confidence            4567789999999999988778999999999999999999999999999977653   4689999999999999999999


Q ss_pred             cCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--C-HHHHHHHHHHHHHHc-C-CEeeCCCCCccc-ccccCcchHHHH
Q 020236           98 RGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--T-MHSRESVASKVLEET-G-AVLVHPYNDGRI-ISGQGTISLEFL  171 (329)
Q Consensus        98 ~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~-~~~~~~~a~~~~~~~-~-~~~~~~~~n~~~-~~g~~t~~~Ei~  171 (329)
                      +|+++++|||+.+|.+|+++|+.+||+|+.++.  . +..+.+++++++++. + .++++||+||.+ ..|+.++++||+
T Consensus        84 ~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~EI~  163 (300)
T COG0031          84 KGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGPEIW  163 (300)
T ss_pred             cCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHHHHH
Confidence            999999999999999999999999999999986  3 777888999998874 5 788889999985 567889999999


Q ss_pred             hhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHH
Q 020236          172 EQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPI  250 (329)
Q Consensus       172 ~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~  250 (329)
                      +|++ .+|+||+++|||||++|++++||+.+|++++++|||.+++.+.    .|.      .+...+||+.+.-+  ...
T Consensus       164 ~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP~~S~~~~----~G~------g~~~i~GIG~~~ip--~~~  231 (300)
T COG0031         164 QQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDPEGSVLLS----GGE------GPHKIEGIGAGFVP--ENL  231 (300)
T ss_pred             HHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECCCCCcccC----CCC------CCcccCCCCCCcCC--ccc
Confidence            9998 5999999999999999999999999999999999999987432    132      23344666654212  123


Q ss_pred             HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChH
Q 020236          251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLG  321 (329)
Q Consensus       251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~  321 (329)
                      ..+.+|+++.|+|+|+++++|+|+++||+++++|||++++|++++  +++.  .++++||+|+|+ |++|++
T Consensus       232 ~~~~iD~v~~V~d~~A~~~~r~La~~eGilvG~SsGA~~~aa~~~--a~~~--~~g~~IVti~pD~G~RYls  299 (300)
T COG0031         232 DLDLIDEVIRVSDEEAIATARRLAREEGLLVGISSGAALAAALKL--AKEL--PAGKTIVTILPDSGERYLS  299 (300)
T ss_pred             ccccCceEEEECHHHHHHHHHHHHHHhCeeecccHHHHHHHHHHH--HHhc--CCCCeEEEEECCCcccccC
Confidence            356799999999999999999999999999999999999999998  5553  368999999998 899986

>PRK08197 threonine synthase; Validated

Probab=100.00  E-value=2.8e-61  Score=454.74  Aligned_cols=303  Identities=24%  Similarity=0.276  Sum_probs=272.2

Q ss_pred             hccccCCCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236           22 ISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI  100 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~  100 (329)
                      +....|+|||+++++|++.+| .+||+|+|++|||||||||++.+++..+.+ .+.++|+++|+||||+|+|++|+.+|+
T Consensus        73 vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~-~g~~~vv~aSsGN~g~alA~~aa~~G~  151 (394)
T PRK08197         73 VSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKE-LGVKHLAMPTNGNAGAAWAAYAARAGI  151 (394)
T ss_pred             CccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHH-cCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence            344568999999999998888 699999999999999999999999998854 467899999999999999999999999


Q ss_pred             CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CCC
Q 020236          101 PAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LLD  178 (329)
Q Consensus       101 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~d  178 (329)
                      +|+||+|++.++.|+++++.+||+|+.++++++++.+.+++++++.+++++++++||++++|++|+++||++|++  .||
T Consensus       152 ~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~~~~~~~~a~~~~~~~g~~~~~~~~np~~ieG~~t~a~Ei~eQl~~~~pD  231 (394)
T PRK08197        152 RATIFMPADAPEITRLECALAGAELYLVDGLISDAGKIVAEAVAEYGWFDVSTLKEPYRIEGKKTMGLELAEQLGWRLPD  231 (394)
T ss_pred             cEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcccccCCCCccchhcHHHHHHHHHHHcCCCCCC
Confidence            999999999999999999999999999999999999999998888899999999999999999999999999998  399


Q ss_pred             EEEEeCCCChHHHHHHHHHHHh-------CCCCEEEEEecCCCchHHHHHHcCCeee--cCCCCccccccccCC---Ccc
Q 020236          179 TIIVPISGGGLISGVALAAKSI-------KPAIRILAAEPIGANDAAQSKAAGRIIT--LLETNTVADGLRAFL---GDL  246 (329)
Q Consensus       179 ~vv~~~GtGg~~~Gi~~~~k~~-------~~~~~vi~v~~~~~~~~~~~~~~g~~~~--~~~~~t~~~gl~~~~---~~~  246 (329)
                      +||+|+|+||+++|++++|+++       .+.+|+|+|||.++++++++++.|....  ....+++++|+..+.   ...
T Consensus       232 ~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii~Vq~~g~~~l~~~~~~g~~~~~~~~~~~tia~gl~~~~~~~~~~  311 (394)
T PRK08197        232 VILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLVAVQAEGCAPIVKAWEEGKEESEFWEDAHTVAFGIRVPKALGDFL  311 (394)
T ss_pred             EEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEEEEEeCCCCHHHHHHHcCCCccccCCCCCceehhhhCCCCCCHHH
Confidence            9999999999999999999997       3889999999999999999999886432  335678888887542   124


Q ss_pred             cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHH
Q 020236          247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWD  325 (329)
Q Consensus       247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~  325 (329)
                      .++.++++.+..+.|+|+|+++++++|++++|+++||+||++++|++++  .+++.+.++++||+++|| |.+|++.+..
T Consensus       312 ~~~~~~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaala~~~~l--~~~~~~~~~~~Vv~v~tG~g~k~~~~~~~  389 (394)
T PRK08197        312 VLDAVRETGGCAIAVSDDAILAAQRELAREEGLFACPEGAATFAAARQL--RESGWLKGDERVVLFNTGSGLKYPDTVPV  389 (394)
T ss_pred             HHHHHHHhCCEEEEeCHHHHHHHHHHHHhcCCceECchHHHHHHHHHHH--HHcCCcCCCCcEEEEeCCCCcCchhhhhh
Confidence            5677788999999999999999999999999999999999999999987  666666778999999998 6789998876


Q ss_pred             hh
Q 020236          326 SF  327 (329)
Q Consensus       326 ~~  327 (329)
                      .+
T Consensus       390 ~~  391 (394)
T PRK08197        390 VV  391 (394)
T ss_pred             hc
Confidence            54

>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia

Probab=100.00  E-value=1.3e-60  Score=445.64  Aligned_cols=308  Identities=20%  Similarity=0.240  Sum_probs=270.9

Q ss_pred             CCHHHHHHHHHHhccc----------------cCCCCCccchhhhhhcC--------CeEEEEecCCCC-CCccchhhHH
Q 020236           10 ANFSSIKEAQKRISLY----------------IHKTPVLSSETLNSMSG--------RSLFFKCECFQK-GGAFKFRGAS   64 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~----------------i~~TPl~~~~~l~~~~g--------~~i~~K~E~~np-tGS~KdR~a~   64 (329)
                      ++++|+..+++++..+                +++|||+++++|++.+|        .+||+|+|++|| |||||||++.
T Consensus        18 ~~~~~i~~a~~~i~~~~~~~~~~~~~~~~~~~~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~   97 (404)
T cd06447          18 LSREDIFDAEARLKRFAPYIAKVFPETAASHGIIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGI   97 (404)
T ss_pred             CCHHHHHHHHHHHhhcchhhhhhCccccccCCccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHH
Confidence            6799999999999988                99999999999988765        799999999999 9999999999


Q ss_pred             HHHhcC-----chhcc--------------------CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH
Q 020236           65 NAVLSL-----DEDQA--------------------IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVV  119 (329)
Q Consensus        65 ~~l~~a-----~~~~~--------------------~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~  119 (329)
                      +++..+     .+.+.                    .++||++||||||+|+|++|+.+|++|+||||+++++.|++.|+
T Consensus        98 ~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ir  177 (404)
T cd06447          98 YEVLKHAEKLALEHGLLTLEDDYSKLASEKFRKLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLR  177 (404)
T ss_pred             HHHHHHhHHHHHHhCCCCcccchhhhhhhhhhhcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHH
Confidence            998653     12111                    24899999999999999999999999999999999999999999


Q ss_pred             HcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCC----C-----CCEEEEeCCCChH
Q 020236          120 RYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVP----L-----LDTIIVPISGGGL  189 (329)
Q Consensus       120 ~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~----~-----~d~vv~~~GtGg~  189 (329)
                      .+||+|+.++++++++.+.+++++++. +++|++|+++++.++||+|+++||++|++    +     ||+||+|+|+||+
T Consensus       178 a~GAeVv~v~~~~~~a~~~a~~la~~~~~~~~v~~~n~~~~iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGl  257 (404)
T cd06447         178 SKGVTVVEYETDYSKAVEEGRKQAAADPMCYFVDDENSRDLFLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGA  257 (404)
T ss_pred             HCCCEEEEECCCHHHHHHHHHHHHHHCCCeEeCCCCCchhHHhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHH
Confidence            999999999999999999999998886 67899998888899999999999999996    3     4589999999999


Q ss_pred             HHHHHHHHHHh-CCCCEEEEEecCCCchHHHHHHcCCeeecC------CCCccccccccC-CCcccHHHHhhcCCcEEEe
Q 020236          190 ISGVALAAKSI-KPAIRILAAEPIGANDAAQSKAAGRIITLL------ETNTVADGLRAF-LGDLTWPIVRDLVDDVITV  261 (329)
Q Consensus       190 ~~Gi~~~~k~~-~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~------~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V  261 (329)
                      ++|++++||+. .|+++||+|||.++++++.+++.|...+..      ...|+++|+.++ ++...++++++.+|+++.|
T Consensus       258 i~GIa~~lK~~~~p~~kVigVeP~~ap~~~~s~~ag~~~~~~~~~~g~~~~TiadGl~~~~p~~~~~~~~~~~vd~~v~V  337 (404)
T cd06447         258 PGGVAFGLKLIFGDNVHCFFAEPTHSPCMLLGMATGLHDKISVQDIGIDNRTAADGLAVGRPSGLVGKLMEPLLSGIYTV  337 (404)
T ss_pred             HHHHHHHHHHhcCCCCEEEEEccCCChHHHHHHHcCCCccccccccCCCccchhhhhcCCCcchhHHHHHHHhCCcEEEE
Confidence            99999999997 788999999999999898888888664432      257899999986 6677788888999999999


Q ss_pred             CHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccC---------CCCCCCCeEEEEeCCCCCC
Q 020236          262 EDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN---------PAWQDSKKIGIVLSGGNVD  319 (329)
Q Consensus       262 ~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~---------~~~~~~~~vv~v~tgg~~~  319 (329)
                      +|+|+.+++++|++++|+++|||||++++|++++  .++         +---++.+.++..|||.+-
T Consensus       338 sd~ei~~a~r~La~~~gi~vepSgAa~lAAl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  402 (404)
T cd06447         338 EDDELYRLLAMLKDSENIEVEPSAAAGFTGPAQV--LSEAEGKRYVRLGYRMENATHIVWATGGSMV  402 (404)
T ss_pred             CHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHH--HHhhhHHHhcCccccccCceEEEEccCCCCC
Confidence            9999999999999999999999999999999987  322         1111456778888888653

D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.

>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family

Probab=100.00  E-value=2.6e-60  Score=442.72  Aligned_cols=315  Identities=21%  Similarity=0.308  Sum_probs=278.1

Q ss_pred             HHHHHHHHHHhccccCCCCCccchhhhhhcC-CeEEEEecCCCC-CCccchhhHHHHHhcCchh----------------
Q 020236           12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQK-GGAFKFRGASNAVLSLDED----------------   73 (329)
Q Consensus        12 ~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~np-tGS~KdR~a~~~l~~a~~~----------------   73 (329)
                      +.+...++.++..+ .+|||++++.|++.+| .+||+|+|++|+ +||||+|++.+.+..+..+                
T Consensus         7 ~~~~~~~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~   85 (376)
T TIGR01747         7 AKLALAFHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKN   85 (376)
T ss_pred             HHHHHHHHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhh
Confidence            45667788888766 8999999999999999 699999999985 8999999999998876442                


Q ss_pred             ------ccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcC
Q 020236           74 ------QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETG  147 (329)
Q Consensus        74 ------~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~  147 (329)
                            .+..+|+++|+||||+|+|++|+.+|++|+||||+++++.|+.+|+.+||+|+.++++++++.+.+++++++.+
T Consensus        86 ~~~~~~~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~~~~a~~~a~~~~~~~g  165 (376)
T TIGR01747        86 DAIGEKMGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMNYDDTVRLAMQMAQQHG  165 (376)
T ss_pred             hHHHhhcCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHHhcC
Confidence                  12568999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             CEeeC-----CCCC--cccccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhC-C-CCEEEEEecCC
Q 020236          148 AVLVH-----PYND--GRIISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIK-P-AIRILAAEPIG  213 (329)
Q Consensus       148 ~~~~~-----~~~n--~~~~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~-~-~~~vi~v~~~~  213 (329)
                      +++++     +|+|  |+.++||+|+++||++|++     .||+||+|+|+||+++|++.++++.. + .+++|+|||.+
T Consensus       166 ~~~~~~~~~~~~~~~~~~ii~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi~Vep~g  245 (376)
T TIGR01747       166 WVVVQDTAWEGYEKIPTWIMQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSIVVEPDK  245 (376)
T ss_pred             cEEeccccccccccCCchHHHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEEEEeeCC
Confidence            88887     4665  6679999999999999996     69999999999999999999998765 3 36999999999


Q ss_pred             CchHHHHHHc--CCeeecC-CCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHc----CceeCcch
Q 020236          214 ANDAAQSKAA--GRIITLL-ETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEIL----KVAVEPSG  285 (329)
Q Consensus       214 ~~~~~~~~~~--g~~~~~~-~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~e----gi~~~pss  285 (329)
                      ++++++++..  |++.+.+ ...|+++|+.++ ++...|+++++..+.++.|+|+|+.+|+++|++..    ++++||++
T Consensus       246 a~~~~~s~~~~~g~~~~~~~~~~Tiadgl~~~~~~~~~~~~~~~~~~~~v~V~D~ei~~A~~~L~~~~g~~~~i~~epag  325 (376)
T TIGR01747       246 ADCLYQSAVKKDGDIVNVGGDMATIMAGLACGEPNPISWEILRNCTSQFISAQDSVAAKGMRVLGAPYGGDPRIISGESG  325 (376)
T ss_pred             CCHHHHHHHhcCCCeEEcCCCccccccccccCCcchHHHHHHHhcCCEEEEcCHHHHHHHHHHHhcccCCCCeEeeeCch
Confidence            9999999977  8887776 368999999986 67789999999999999999999999999999855    59999999


Q ss_pred             HHHHHHHhcc-------ccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236          286 AIGLAAVLSD-------GFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF  327 (329)
Q Consensus       286 a~alaa~~~~-------~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~  327 (329)
                      |+++|++...       .+.+++.+.++++||+++||||.|++.|++++
T Consensus       326 a~~la~l~~~~~~~~~~~~~~~~~~~~~~~vvvi~t~gn~d~~~~~~~~  374 (376)
T TIGR01747       326 AVGLGLLAAVMYHPQYQSLMEKLQLDKDAVVLVISTEGDTDPDHYREIV  374 (376)
T ss_pred             HHHHHHHHHHHhCchHHHHHHHcCCCCCCEEEEEeCCCCCCHHHHHHHh
Confidence            9999887732       11334456678999999999999999999986

This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).

>PRK06260 threonine synthase; Validated

Probab=100.00  E-value=1.7e-60  Score=449.82  Aligned_cols=300  Identities=22%  Similarity=0.291  Sum_probs=268.6

Q ss_pred             hccccCCCCCccchhhhhhcCC-eEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236           22 ISLYIHKTPVLSSETLNSMSGR-SLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI  100 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~l~~~~g~-~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~  100 (329)
                      +...+|+|||+++++|++.+|. +||+|+|++|||||||||++.+++.++.+. +.++|+++||||||+|+|++|+.+|+
T Consensus        61 v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~-g~~~vv~aSsGN~g~alA~~aa~~G~  139 (397)
T PRK06260         61 VSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALEL-GVKTVACASTGNTSASLAAYAARAGL  139 (397)
T ss_pred             ccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHc-CCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence            5567899999999999988886 999999999999999999999999988554 56899999999999999999999999


Q ss_pred             CEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CC
Q 020236          101 PAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LL  177 (329)
Q Consensus       101 ~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~  177 (329)
                      +|+||+|++ ++..|+.+++.+||+|+.++++++++.+.+++++++.++|+++++ ||++++||+|+++||++|++  .|
T Consensus       140 ~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~g~y~~~~~-np~~~~G~~t~a~Ei~eQl~~~~p  218 (397)
T PRK06260        140 KCYVLLPAGKVALGKLAQALLHGAKVLEVDGNFDDALDMVVELAKEGKIYLLNSI-NPFRLEGQKTIGFEIADQLGWEVP  218 (397)
T ss_pred             cEEEEEeCCCccHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhCCEEeecCC-CchhhcchhhHHHHHHHHhCCCCC
Confidence            999999997 789999999999999999999999999999999888889999987 89999999999999999998  59


Q ss_pred             CEEEEeCCCChHHHHHHHHHHHhC------CCCEEEEEecCCCchHHHHHHcCCee--ecCCCCccccccccC---CCcc
Q 020236          178 DTIIVPISGGGLISGVALAAKSIK------PAIRILAAEPIGANDAAQSKAAGRII--TLLETNTVADGLRAF---LGDL  246 (329)
Q Consensus       178 d~vv~~~GtGg~~~Gi~~~~k~~~------~~~~vi~v~~~~~~~~~~~~~~g~~~--~~~~~~t~~~gl~~~---~~~~  246 (329)
                      |+||+|+|+||+++|++++|+++.      +.+|+|+||+.+++++++++..|...  +.+...|+++++..+   ..+.
T Consensus       219 d~vvvpvG~Gg~~~Gi~~~~~~l~~~G~i~~~prii~Vq~~g~~~~~~a~~~g~~~~~~~~~~~tia~~i~i~~p~~~~~  298 (397)
T PRK06260        219 DRVVLPVGNAGNISAIWKGFKELVELGIIDKLPKMTGIQAEGAAPIVEAIKKGKDEIEPVENPETVATAIRIGNPVNAPK  298 (397)
T ss_pred             CEEEEeCCcHHHHHHHHHHHHHHHhcCCcCCCCeEEEEecCCCcHHHHHHHcCCCcccccCCCCceeeeeEeCCCCCHHH
Confidence            999999999999999999999876      34799999999999999999988653  334577888888753   2334


Q ss_pred             cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCC-CCChHHHHH
Q 020236          247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG-NVDLGVLWD  325 (329)
Q Consensus       247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg-~~~~~~~~~  325 (329)
                      .++.++++.+.++.|+|+|+++++++|++++|+++||+||++++|++++  .+++.+.++++||+++||+ .+|.+.+.+
T Consensus       299 ~~~~l~~~~g~~v~V~d~e~~~a~~~la~~eGi~vepssaaalAa~~~l--~~~g~i~~~~~VV~i~tG~glK~~~~~~~  376 (397)
T PRK06260        299 ALRAIRESGGTAEAVSDEEILDAQKLLARKEGIGVEPASAASVAGLIKL--VEEGVIDKDERVVCITTGHLLKDPDAAIK  376 (397)
T ss_pred             HHHHHHHHCCEEEEECHHHHHHHHHHHHHhCCCeeCchHHHHHHHHHHH--HHcCCCCCCCeEEEEeCCCccCchHHHHh
Confidence            5667788889999999999999999999999999999999999999987  6677677889999999995 568887753

>PLN02565 cysteine synthase

Probab=100.00  E-value=7.2e-61  Score=439.22  Aligned_cols=290  Identities=20%  Similarity=0.253  Sum_probs=248.2

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSLA   94 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~~   94 (329)
                      .+++.+.+++|||++++.++...+.+||+|+|++|||||||||++.+++..+.+++.    .+.||++||||||.|+|++
T Consensus         6 ~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA~~   85 (322)
T PLN02565          6 AKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLAFM   85 (322)
T ss_pred             hhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHHHH
Confidence            345777899999999988765556799999999999999999999999998866543    2459999999999999999


Q ss_pred             HHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEeeCCCCCccc-ccccCcchHHH
Q 020236           95 AKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEET-GAVLVHPYNDGRI-ISGQGTISLEF  170 (329)
Q Consensus        95 a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei  170 (329)
                      |+.+|++|+||||+++++.|+++|+.+||+|+.++.  +++++.+.+++++++. ++++++||+|+.+ ..||+|+++||
T Consensus        86 a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~Ei  165 (322)
T PLN02565         86 AAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGPEI  165 (322)
T ss_pred             HHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999986  4577788899988774 8999999999864 57899999999


Q ss_pred             HhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHH
Q 020236          171 LEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWP  249 (329)
Q Consensus       171 ~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~  249 (329)
                      ++|++ +||+||+|+||||+++|++.+||+.+|.+|||+|||.+++++.    .+.+.     ....+|++....+..+.
T Consensus       166 ~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep~~s~~~~----~g~~~-----~~~~~glg~~~~~~~~~  236 (322)
T PLN02565        166 WKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEPVESAVLS----GGKPG-----PHKIQGIGAGFIPGVLD  236 (322)
T ss_pred             HHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEecCCCcccc----CCCCC-----CccCCCCCCCCCCCcCC
Confidence            99997 8999999999999999999999999999999999999998762    34331     12336666531111121


Q ss_pred             HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                        .+.+|+.+.|+|+|+++++++|++++|+++|||||+++++++++  ++.+. .++++||+++|| |.+|+++
T Consensus       237 --~~~vd~~v~V~d~ea~~a~~~l~~~~gi~vg~ssga~laaa~~~--a~~~~-~~~~~vV~v~~d~G~ky~~~  305 (322)
T PLN02565        237 --VDLLDEVVQVSSDEAIETAKLLALKEGLLVGISSGAAAAAAIKI--AKRPE-NAGKLIVVIFPSFGERYLSS  305 (322)
T ss_pred             --HhHCCEEEEECHHHHHHHHHHHHHHhCcEEeccHHHHHHHHHHH--HHhcC-CCCCeEEEEECCCccccCCc
Confidence              25789999999999999999999999999999999999999988  55443 467899999998 7899886

>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate

Probab=100.00  E-value=2e-60  Score=439.48  Aligned_cols=295  Identities=27%  Similarity=0.371  Sum_probs=264.5

Q ss_pred             HhccccCCCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236           21 RISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG   99 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G   99 (329)
                      ++...+++|||+++++|++..| .+||+|+|++|||||||||++.+++.++.++ +.++|+++|+||||+|+|++|+.+|
T Consensus        15 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~-g~~~vv~~SsGN~g~alA~~a~~~G   93 (324)
T cd01563          15 IVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKEL-GVKAVACASTGNTSASLAAYAARAG   93 (324)
T ss_pred             cccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHc-CCCEEEEeCCCHHHHHHHHHHHHcC
Confidence            4667889999999999998777 8999999999999999999999999998654 5778999999999999999999999


Q ss_pred             CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CC
Q 020236          100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LL  177 (329)
Q Consensus       100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~  177 (329)
                      ++|++|+|++.++.|+++|+.+||+|+.++++++++.+.+++++++. ++|++||+|+.+++||.++++||++|++  .|
T Consensus        94 ~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~~~~~~~~~a~~~~~~~-~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~~  172 (324)
T cd01563          94 IKCVVFLPAGKALGKLAQALAYGATVLAVEGNFDDALRLVRELAEEN-WIYLSNSLNPYRLEGQKTIAFEIAEQLGWEVP  172 (324)
T ss_pred             CceEEEEeCCCCHHHHHHHHHcCCEEEEECCcHHHHHHHHHHHHHhc-CeeccCCCCcceecchhhhHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999998877 8999999999999999999999999997  69


Q ss_pred             CEEEEeCCCChHHHHHHHHHHHhC------CCCEEEEEecCCCchHHHHHHcCCe--eecCCCCccccccccCC---Ccc
Q 020236          178 DTIIVPISGGGLISGVALAAKSIK------PAIRILAAEPIGANDAAQSKAAGRI--ITLLETNTVADGLRAFL---GDL  246 (329)
Q Consensus       178 d~vv~~~GtGg~~~Gi~~~~k~~~------~~~~vi~v~~~~~~~~~~~~~~g~~--~~~~~~~t~~~gl~~~~---~~~  246 (329)
                      |+||+|+||||+++|++.+||...      +.++||+|||.++++++++++.|..  ...+...++++|++.+.   .+.
T Consensus       173 d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~t~~~gl~~~~~~~~~~  252 (324)
T cd01563         173 DYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMVGVQAEGAAPIVRAFKEGKDDIEPVENPETIATAIRIGNPASGPK  252 (324)
T ss_pred             CEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEEEEecCCCCHHHHHHHcCCCccCcCCCCCceeeeeecCCCCCHHH
Confidence            999999999999999999999875      5799999999999999999988854  44556788889887642   233


Q ss_pred             cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCC
Q 020236          247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVD  319 (329)
Q Consensus       247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~  319 (329)
                      .++.++++.++++.|+|+|++++++++++++|+++||+||+++++++++  .+++.+.++++||+++|| |.+|
T Consensus       253 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~l--~~~~~~~~~~~Vv~v~tg~g~~~  324 (324)
T cd01563         253 ALRAVRESGGTAVAVSDEEILEAQKLLARTEGIFVEPASAASLAGLKKL--REEGIIDKGERVVVVLTGHGLKD  324 (324)
T ss_pred             HHHHHHHhCCEEEEECHHHHHHHHHHHHhcCCceeCchHHHHHHHHHHH--HHcCCCCCCCcEEEEeCCCccCC
Confidence            4567778889999999999999999999999999999999999999987  555545578899999999 5543

It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.

>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase

Probab=100.00  E-value=7e-60  Score=444.18  Aligned_cols=320  Identities=18%  Similarity=0.173  Sum_probs=277.6

Q ss_pred             CCCCCCCCHHHHHHHHHHhcc----------------ccCCCCCccchhhhhhc--------CCeEEEEecCCCC-CCcc
Q 020236            4 NGEKYAANFSSIKEAQKRISL----------------YIHKTPVLSSETLNSMS--------GRSLFFKCECFQK-GGAF   58 (329)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~----------------~i~~TPl~~~~~l~~~~--------g~~i~~K~E~~np-tGS~   58 (329)
                      ..+...++++|+.++..++..                .+++|||++++++++.+        +.+||+|+|++|| ||||
T Consensus        30 ~~~~~~~~~~~i~~a~~~~~~~~~~~~~~fp~~~~~~~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSf  109 (431)
T TIGR02035        30 YLPKVGLKAQEVAEAEARLQRFAPYIAKVFPETAATGGIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSI  109 (431)
T ss_pred             ccccCCCCHHHHHHHHHHHHhhhhhHHHhCccccccCCccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCc
Confidence            345667999999999999988                89999999999998854        4799999999999 9999


Q ss_pred             chhhHHHHHhcC-----chhcc--------------------CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHH
Q 020236           59 KFRGASNAVLSL-----DEDQA--------------------IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKC  113 (329)
Q Consensus        59 KdR~a~~~l~~a-----~~~~~--------------------~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~  113 (329)
                      |||++.+++..+     .+.+.                    .++|+++||||||.|+|++|+.+|++|+||||+++++.
T Consensus       110 KdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~  189 (431)
T TIGR02035       110 KARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKFKDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQW  189 (431)
T ss_pred             HHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhhhhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHH
Confidence            999999998652     22221                    25799999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCC---------CCCEEEEe
Q 020236          114 KVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVP---------LLDTIIVP  183 (329)
Q Consensus       114 ~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~---------~~d~vv~~  183 (329)
                      |++.++.+||+|+.++++++++.+.+++++++. +++|+++.+.++..+||+|+++||++|++         .||+|++|
T Consensus       190 K~~~ir~~GAeVv~~~~~~~~a~~~A~~la~~~~~~~~~d~~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp  269 (431)
T TIGR02035       190 KKDKLRSKGVTVVEYESDYGVAVEEGRKNADADPMCYFVDDENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLP  269 (431)
T ss_pred             HHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeEECCCCCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEE
Confidence            999999999999999999999999999998875 57788886555678999999999999994         36799999


Q ss_pred             CCCChHHHHHHHHHHHh-CCCCEEEEEecCCCchHHHHHHcCCeeecC------CCCccccccccC-CCcccHHHHhhcC
Q 020236          184 ISGGGLISGVALAAKSI-KPAIRILAAEPIGANDAAQSKAAGRIITLL------ETNTVADGLRAF-LGDLTWPIVRDLV  255 (329)
Q Consensus       184 ~GtGg~~~Gi~~~~k~~-~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~------~~~t~~~gl~~~-~~~~~~~~~~~~~  255 (329)
                      +|+||+++|++.+||+. +|+++||+|||.+++++..++..|.....+      ...|+++||+++ ++...++++++++
T Consensus       270 ~G~GGli~Gia~~lK~~~~~~vkvi~VEp~~s~~~~~s~~~g~~~~~~~~~~g~~~~T~AdGlav~~p~~~~~~~~~~~v  349 (431)
T TIGR02035       270 CGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCMLLGVYTGLHEKISVQDIGIDNITAADGLAVGRPSGFVGRLMEPLL  349 (431)
T ss_pred             eCcCHHHHHHHHHHHHhcCCCCEEEEEeeCCCHHHHHHHhcCCCccccccccCCCCCceeccccCCCcchhHHHHHHHhC
Confidence            99999999999999997 789999999999999999999888643322      347899999986 6777888888899


Q ss_pred             CcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccC--------C---CCCCCCeEEEEeCCCCCChHHHH
Q 020236          256 DDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN--------P---AWQDSKKIGIVLSGGNVDLGVLW  324 (329)
Q Consensus       256 ~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~--------~---~~~~~~~vv~v~tgg~~~~~~~~  324 (329)
                      |+++.|+|+|+.+++++|++++|+++|||||++++++.++  .+.        +   .+.++.++++..|||.+-++..+
T Consensus       350 d~vv~VsD~ei~~a~~~L~~~egi~vEpSsaa~laa~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~tg~~~~p~~~~  427 (431)
T TIGR02035       350 SGIYTVDDYTLYDLLRILAESEGKRLEPSALAGMEGPVRL--LKYEDSYRYIEGRIGKNLNNATHVVWATGGGMVPEEEM  427 (431)
T ss_pred             CeEEEECHHHHHHHHHHHHHHcCCeEcHHHHHHHHHHHHH--HhhhhhHHHHcCccccccCCCeEEEEecCCCCCCHHHH
Confidence            9999999999999999999999999999999999998875  222        1   11247899999999877666654


Q ss_pred             H
Q 020236          325 D  325 (329)
Q Consensus       325 ~  325 (329)
                      +
T Consensus       428 ~  428 (431)
T TIGR02035       428 E  428 (431)
T ss_pred             H
Confidence            4

This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.

>PLN02356 phosphateglycerate kinase

Probab=100.00  E-value=1.6e-60  Score=444.66  Aligned_cols=299  Identities=21%  Similarity=0.254  Sum_probs=249.8

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a   95 (329)
                      +.++.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++..+.+++.   ...|+++||||||+++|++|
T Consensus        44 ~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~g~VveaSSGN~g~alA~~a  123 (423)
T PLN02356         44 RNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPGGVVTEGSAGSTAISLATVA  123 (423)
T ss_pred             hhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCCCEEEEeCCHHHHHHHHHHH
Confidence            455677899999999999988888999999999999999999999999998866443   23577799999999999999


Q ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC-------CH-HHHH---HHHHHHHHH-------------------
Q 020236           96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA-------TM-HSRE---SVASKVLEE-------------------  145 (329)
Q Consensus        96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~-------~~-~~~~---~~a~~~~~~-------------------  145 (329)
                      +.+|++|+||||+++++.|+++|+.+||+|+.+++       ++ ..++   +.+.+++++                   
T Consensus       124 a~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~~~  203 (423)
T PLN02356        124 PAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNGCI  203 (423)
T ss_pred             HHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccccc
Confidence            99999999999999999999999999999999964       12 1111   223444332                   


Q ss_pred             --------------cCCEeeCCCCCccc-ccccCcchHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEE
Q 020236          146 --------------TGAVLVHPYNDGRI-ISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAA  209 (329)
Q Consensus       146 --------------~~~~~~~~~~n~~~-~~g~~t~~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v  209 (329)
                                    ++++|+|||+|+.+ ..|+..+|+||++|++ ++|+||+|+||||+++|++++||+.+|++||++|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigV  283 (423)
T PLN02356        204 SEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLI  283 (423)
T ss_pred             ccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEE
Confidence                          46789999999885 3343446999999997 8999999999999999999999999999999999


Q ss_pred             ecCCCc---------hHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCce
Q 020236          210 EPIGAN---------DAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVA  280 (329)
Q Consensus       210 ~~~~~~---------~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~  280 (329)
                      ||.++.         .++++++.|+....+ .+++++|++.+  ...+......+|+++.|+|+|++++++++++++|++
T Consensus       284 ep~~s~~~~~~~~~~~~~~s~~~G~~~~~~-~~tia~Gig~~--~~~~~~~~~~vD~~v~Vsd~ea~~a~r~L~~~~Gl~  360 (423)
T PLN02356        284 DPPGSGLFNKVTRGVMYTREEAEGRRLKNP-FDTITEGIGIN--RLTQNFLMAKLDGAFRGTDKEAVEMSRYLLKNDGLF  360 (423)
T ss_pred             ecCCCccccccccchhhhhhhhcCCccCCC-CCeecCcCcCC--CCChhHhHHhCCcEEEECHHHHHHHHHHHHHHCCee
Confidence            999876         455667777665443 36899999864  233344567899999999999999999999999999


Q ss_pred             eCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHH
Q 020236          281 VEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLW  324 (329)
Q Consensus       281 ~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~  324 (329)
                      +|||||++++|++++  ++.  +.++++||+|+|| |.+|+++++
T Consensus       361 vg~Ssaa~laaa~~l--a~~--~~~g~~VV~Il~d~G~kyl~~~~  401 (423)
T PLN02356        361 VGSSSAMNCVGAVRV--AQS--LGPGHTIVTILCDSGMRHLSKFH  401 (423)
T ss_pred             EeECHHHHHHHHHHH--HHH--hCCCCeEEEEECCCCcchhhhhc
Confidence            999999999999986  433  3468899999998 899998864

>PRK06352 threonine synthase; Validated

Probab=100.00  E-value=4.6e-60  Score=439.39  Aligned_cols=296  Identities=27%  Similarity=0.344  Sum_probs=255.7

Q ss_pred             HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI  100 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~  100 (329)
                      ++...+|+|||+++++|+..+|.+||+|+|++|||||||||++.+++.++.++ +.++||++|+||||+|+|++|+.+|+
T Consensus        21 ~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~-g~~~vV~aSsGN~G~AlA~~aa~~G~   99 (351)
T PRK06352         21 MISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEE-GAEAVICASTGNTSAAAAAYATRAGL   99 (351)
T ss_pred             ccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHC-CCCEEEEECCcHHHHHHHHHHHHcCC
Confidence            35567899999999999988889999999999999999999999999998654 56789999999999999999999999


Q ss_pred             CEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCC
Q 020236          101 PAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLD  178 (329)
Q Consensus       101 ~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d  178 (329)
                      +|+||||++ .++.|+++|+.+||+|+.++++++++.+.+++++++.++++.++ .||.+++||.++++||++|++ .||
T Consensus       100 ~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~n~~~~~G~~t~~~EI~~Q~~~~~D  178 (351)
T PRK06352        100 KAYIVIPEGKVALGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLVNS-VNPYRLEGQKTAAFEICEQLGSAPD  178 (351)
T ss_pred             cEEEEEeCCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCcccccC-CCccceeeHHHHHHHHHHHcCCCCC
Confidence            999999998 58999999999999999999999999999999988877777664 589999999999999999998 799


Q ss_pred             EEEEeCCCChHHHHHHHHHHHhCCC-----CEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHH--
Q 020236          179 TIIVPISGGGLISGVALAAKSIKPA-----IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV--  251 (329)
Q Consensus       179 ~vv~~~GtGg~~~Gi~~~~k~~~~~-----~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~--  251 (329)
                      +||+|+|+||+++|++++||+++|.     ++||+|||.+++++.    .|++.  +...++++++..+. +..|...  
T Consensus       179 ~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi~Vep~g~~~~~----~g~~~--~~~~~ia~~l~~~~-~~~~~~~~~  251 (351)
T PRK06352        179 VLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEGAAAIV----QGKPI--DNPETIATAIRIGN-PASWGLAEA  251 (351)
T ss_pred             EEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEEEEeeCCCCHHH----hCCCc--CCCCcceeEEEeCC-CCcHHHHHH
Confidence            9999999999999999999998876     899999999997643    44443  23557777776432 2234332  


Q ss_pred             --hhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhh
Q 020236          252 --RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSF  327 (329)
Q Consensus       252 --~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~  327 (329)
                        +...+.++.|+|+|++++++++++++|+++||+||+++||++++  .+++.+.++++||+++|| |++|++++....
T Consensus       252 ~~d~~~g~~~~V~d~e~~~a~r~la~~eGi~vepssaaalAa~~~~--~~~~~~~~~~~Vv~v~tg~G~~~~~~~~~~~  328 (351)
T PRK06352        252 ARDESGGYIHSVTDDEIVNAYKKIAAQDGVFIEPGSAASLAGVIQH--VANGTIKKGETVVCVFTGNGLKDPDTAMSVH  328 (351)
T ss_pred             HHHHhCCEEEEECHHHHHHHHHHHHhhcCceEchhHHHHHHHHHHH--HHcCCCCCCCcEEEEeCCCCcCChHHHHhhc
Confidence              33445699999999999999999999999999999999999986  444445578899999999 899999986543

>PRK11761 cysM cysteine synthase B; Provisional

Probab=100.00  E-value=3.3e-60  Score=430.86  Aligned_cols=281  Identities=19%  Similarity=0.233  Sum_probs=243.4

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a   95 (329)
                      ++++.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++..+.+++.   .++|+++|+||||+|+|++|
T Consensus         3 ~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a   82 (296)
T PRK11761          3 YPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPGDTLIEATSGNTGIALAMIA   82 (296)
T ss_pred             cccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHH
Confidence            456777899999999999988788999999999999999999999999999866543   25699999999999999999


Q ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHcCCEeeCCCCCcccc-cccCcchHHHHh
Q 020236           96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEETGAVLVHPYNDGRII-SGQGTISLEFLE  172 (329)
Q Consensus        96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~  172 (329)
                      +.+|++|+||||+..++.|+++|+.+||+|+.++.  +++++.+.+++++++.+++|++||+|+.++ .||.|+++||++
T Consensus        83 ~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~e  162 (296)
T PRK11761         83 AIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEGEGKVLDQFANPDNPLAHYETTGPEIWR  162 (296)
T ss_pred             HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhccCCEecCCCCChhhHHHHhhchHHHHHH
Confidence            99999999999999999999999999999999996  688888899999888889999999998854 568999999999


Q ss_pred             hCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHH
Q 020236          173 QVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV  251 (329)
Q Consensus       173 ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~  251 (329)
                      |++ ++|+||+|+||||+++|++.+||+.+|++|||+|||.+++++.     |-           .+......+..  ..
T Consensus       163 q~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvigVep~~~~~i~-----g~-----------~~~~~~~~~~~--~~  224 (296)
T PRK11761        163 QTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIVGLQPEEGSSIP-----GI-----------RRWPEEYLPKI--FD  224 (296)
T ss_pred             hcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEEEEecCCCCcCc-----CC-----------CCCCCCcCCcc--cC
Confidence            997 7999999999999999999999999999999999999886541     10           00000000111  12


Q ss_pred             hhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          252 RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       252 ~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      ...+|+++.|+|+|+++++++|++++|+++|||||+++++++++  ++.   .++++||+|+|| |.+|+++
T Consensus       225 ~~~vd~~v~V~d~e~~~a~~~l~~~~gi~ve~ssga~laaa~~~--~~~---~~~~~vV~v~~d~g~ky~~~  291 (296)
T PRK11761        225 ASRVDRVLDVSQQEAENTMRRLAREEGIFCGVSSGGAVAAALRI--ARE---NPNAVIVAIICDRGDRYLST  291 (296)
T ss_pred             hhhCCEEEEECHHHHHHHHHHHHHHhCceEchhHHHHHHHHHHH--HHH---CCCCeEEEEECCCCcccCCh
Confidence            45789999999999999999999999999999999999999986  433   256899999998 8999986

>PLN03013 cysteine synthase

Probab=100.00  E-value=8.6e-60  Score=439.84  Aligned_cols=293  Identities=19%  Similarity=0.238  Sum_probs=251.6

Q ss_pred             HHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHH
Q 020236           18 AQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSL   93 (329)
Q Consensus        18 ~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~   93 (329)
                      .++++.+.+++|||++++.+++..+.+||+|+|++|||||||||++.+++..+++++.    ..+||++||||||+|+|+
T Consensus       113 ~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~ALA~  192 (429)
T PLN03013        113 IADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAF  192 (429)
T ss_pred             HHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHHHH
Confidence            5677888999999999999987777899999999999999999999999999866543    145999999999999999


Q ss_pred             HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHH-cCCEeeCCCCCcccc-cccCcchHH
Q 020236           94 AAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEE-TGAVLVHPYNDGRII-SGQGTISLE  169 (329)
Q Consensus        94 ~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~-~g~~t~~~E  169 (329)
                      +|+.+|++++||||+++++.|+++|+.+||+|+.+++.  ++++.+.+++++++ ++++|++||+||.++ .||+|+++|
T Consensus       193 ~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg~E  272 (429)
T PLN03013        193 IAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPE  272 (429)
T ss_pred             HHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875  55778889998877 479999999999976 599999999


Q ss_pred             HHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccH
Q 020236          170 FLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTW  248 (329)
Q Consensus       170 i~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~  248 (329)
                      |++|++ +||+||+|+||||+++|+++++|+.+|+++||+|||.+++.+    ..|.+.     .+..+|++.+  ...+
T Consensus       273 I~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep~gs~~l----~~g~~~-----~~~i~Glg~~--~ip~  341 (429)
T PLN03013        273 IWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDIL----SGGKPG-----PHKIQGIGAG--FIPK  341 (429)
T ss_pred             HHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEeCCCchh----hCCCCC-----CcccCcccCC--cCCH
Confidence            999997 899999999999999999999999999999999999999765    234331     2334566543  2233


Q ss_pred             HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeC--CCCCChHHHH
Q 020236          249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLS--GGNVDLGVLW  324 (329)
Q Consensus       249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~t--gg~~~~~~~~  324 (329)
                      .+...++|+++.|+|+|+++++++|++++|+++||+||++++|++++  ++... .++++||++++  ||++|.++..
T Consensus       342 ~~~~~~vD~vv~VsD~ea~~a~r~La~~eGi~vG~SSGAalaAalkl--a~~~~-~~g~~IVv~i~~d~g~~Y~~~~~  416 (429)
T PLN03013        342 NLDQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKV--AKRPE-NAGKLIAVSLFASGRDIYTPRCS  416 (429)
T ss_pred             hHHHHhccEEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHH--hhhcc-CCCCEEEEEEcCCCchhchhhhh
Confidence            44567899999999999999999999999999999999999999987  44322 24667656553  5899999863

>PRK10717 cysteine synthase A; Provisional

Probab=100.00  E-value=3.3e-60  Score=438.42  Aligned_cols=297  Identities=21%  Similarity=0.305  Sum_probs=252.4

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a   95 (329)
                      ++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++.   ..+|+++|+||||+|+|++|
T Consensus         4 ~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a   83 (330)
T PRK10717          4 FEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPGGTIVEGTAGNTGIGLALVA   83 (330)
T ss_pred             hhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHH
Confidence            456777899999999999998889999999999999999999999999998866543   25699999999999999999


Q ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC-HH-------HHHHHHHHHHHH--cCCEeeCCCCCccc-ccccC
Q 020236           96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT-MH-------SRESVASKVLEE--TGAVLVHPYNDGRI-ISGQG  164 (329)
Q Consensus        96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-~~-------~~~~~a~~~~~~--~~~~~~~~~~n~~~-~~g~~  164 (329)
                      +++|++|+||+|+..++.|+++++.+||+|+.++++ ++       .+.+.++++.++  .+++|++||+||.+ ..||.
T Consensus        84 ~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~  163 (330)
T PRK10717         84 AARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREAHYE  163 (330)
T ss_pred             HHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHHHHH
Confidence            999999999999999999999999999999999874 22       223344444443  47899999999985 57899


Q ss_pred             cchHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCC
Q 020236          165 TISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFL  243 (329)
Q Consensus       165 t~~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~  243 (329)
                      ++++||++|++ +||+||+|+||||+++|++.+||+.+|+++||+|||.++ +++.++..|+..  ....++++|++.+.
T Consensus       164 t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi~Vep~~~-~~~~~~~~g~~~--~~~~~~~~gl~~~~  240 (330)
T PRK10717        164 TTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIVLADPTGS-ALYSYYKTGELK--AEGSSITEGIGQGR  240 (330)
T ss_pred             hHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEcCCCC-ccccccccCCcC--CCCCcccCcCCCCc
Confidence            99999999998 799999999999999999999999999999999999998 566677666543  24557888887642


Q ss_pred             CcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          244 GDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       244 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      ..  +......+++++.|+|+|++++++++++++|+++||+||+++++++++  ++.  +.++++||+|+|| |.+|++.
T Consensus       241 ~~--~~~~~~~~d~~v~V~d~e~~~a~~~l~~~~gi~vepssga~laa~~~l--~~~--~~~~~~Vv~v~~g~g~ky~~~  314 (330)
T PRK10717        241 IT--ANLEGAPIDDAIRIPDEEALSTAYRLLEEEGLCLGGSSGINVAAALRL--ARE--LGPGHTIVTILCDSGERYQSK  314 (330)
T ss_pred             CC--cccChhhCCEEEEECHHHHHHHHHHHHHhcCCeEeecHHHHHHHHHHH--HHh--cCCCCEEEEEECCCchhhccc
Confidence            12  222344678999999999999999999999999999999999999987  433  2467899999998 7899887


Q ss_pred             HH
Q 020236          323 LW  324 (329)
Q Consensus       323 ~~  324 (329)
                      +.
T Consensus       315 ~~  316 (330)
T PRK10717        315 LF  316 (330)
T ss_pred             cc
Confidence            64

>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase

Probab=100.00  E-value=5.7e-59  Score=436.48  Aligned_cols=315  Identities=22%  Similarity=0.305  Sum_probs=270.2

Q ss_pred             HHHHHHHHHHhccccCCCCCccchhhhhhcC-CeEEEEecCCC-CCCccchhhHHHHHhcCch-----------------
Q 020236           12 FSSIKEAQKRISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQ-KGGAFKFRGASNAVLSLDE-----------------   72 (329)
Q Consensus        12 ~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~n-ptGS~KdR~a~~~l~~a~~-----------------   72 (329)
                      +.++.+++.++. .+.+|||++++.|++.+| .+||+|+|++| ||||||+|++.+.+..+.+                 
T Consensus        26 ~~~~~~~~~~~~-~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~  104 (396)
T TIGR03528        26 AEKVRAFHQSFP-GYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKS  104 (396)
T ss_pred             HHHHHHHHhcCC-CCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhh
Confidence            344445566654 558999999999999999 69999999988 5999999999999886422                 


Q ss_pred             hc-----cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcC
Q 020236           73 DQ-----AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETG  147 (329)
Q Consensus        73 ~~-----~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~  147 (329)
                      +.     ...+||++|+||||+|+|++|+.+|++|+||||++.++.|+++++.+||+|+.++++++++.+.+++++++.+
T Consensus       105 ~~~~~~~~~~~vv~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~~~~a~~~a~~~a~~~g  184 (396)
T TIGR03528       105 NEIREKLGDITFVTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLNYDDAVRLAWKMAQENG  184 (396)
T ss_pred             HHHHhhccCcEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcC
Confidence            10     1238999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             CEeeC-----CCCC--cccccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHh-CCC-CEEEEEecCC
Q 020236          148 AVLVH-----PYND--GRIISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSI-KPA-IRILAAEPIG  213 (329)
Q Consensus       148 ~~~~~-----~~~n--~~~~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~-~~~-~~vi~v~~~~  213 (329)
                      ++|++     +|+|  ++.++||+|+++||++|++     .||+||+|+|+||+++|++.++++. .+. ++||+|||.+
T Consensus       185 ~~~v~~~~~~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi~Vep~~  264 (396)
T TIGR03528       185 WVMVQDTAWEGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITVIVEPDA  264 (396)
T ss_pred             cEeeccccccccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEEEEccCC
Confidence            88886     5765  5568999999999999997     6999999999999999999989654 344 5999999999


Q ss_pred             CchHHHHHHc--CCeeecC-CCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHH----HcCceeCcch
Q 020236          214 ANDAAQSKAA--GRIITLL-ETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYE----ILKVAVEPSG  285 (329)
Q Consensus       214 ~~~~~~~~~~--g~~~~~~-~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~----~egi~~~pss  285 (329)
                      ++++++++..  +++...+ ...|+++|+.++ ++...|+++++++|+++.|+|+|+.++++++++    ++++++||++
T Consensus       265 a~~l~~s~~~~~g~~~~~~g~~~Tiadgl~~~~p~~~~~~~~~~~~d~~v~VsD~ei~~a~r~La~~~~~~~~~~~epsg  344 (396)
T TIGR03528       265 ADCLYRSAIADDGKPHFVTGDMATIMAGLACGEPNTIGWEILRDYASQFISCPDWVAAKGMRILGNPLKGDPRVISGESG  344 (396)
T ss_pred             CchHHHHHHhcCCCEEEeCCCccceecccccCCccHHHHHHHHHhCCeEEEECHHHHHHHHHHHhcccCCCCceeecCcH
Confidence            9999999987  7777776 578999999875 666778899999999999999999999999998    6799999999


Q ss_pred             HHHHHHH---hcc----ccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236          286 AIGLAAV---LSD----GFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF  327 (329)
Q Consensus       286 a~alaa~---~~~----~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~  327 (329)
                      |+++|++   +..    .+.+++.+.++++||+|+||||.|++.|++++
T Consensus       345 a~~~Aalaa~~~~~~~~~~~~~~~~~~~~~vv~i~tggn~d~~~~~~~~  393 (396)
T TIGR03528       345 AVGTGLLAAVMTNPDYKELREKLQLDKNSRVLLISTEGDTDPDNYRKIV  393 (396)
T ss_pred             HHHHHHHHHHHhCchhHHHHHhcCCCCCCEEEEEECCCCCCHHHHHHHh
Confidence            9999544   431    01333445568999999999999999999886

Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.

>PRK07409 threonine synthase; Validated

Probab=100.00  E-value=3.1e-59  Score=435.33  Aligned_cols=297  Identities=23%  Similarity=0.312  Sum_probs=257.8

Q ss_pred             hccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCC
Q 020236           22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIP  101 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~  101 (329)
                      +...+|+|||+++++|+...|.+||+|+|++|||||||||++.+++..+.++ +.++||++||||||+++|++|+.+|++
T Consensus        25 ~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~-g~~~iv~aSsGN~g~alA~~a~~~G~~  103 (353)
T PRK07409         25 VTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEE-GAKAVICASTGNTSASAAAYAARAGLK  103 (353)
T ss_pred             ccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHC-CCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence            4557899999999999988889999999999999999999999999998654 567999999999999999999999999


Q ss_pred             EEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCCE
Q 020236          102 AYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDT  179 (329)
Q Consensus       102 ~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d~  179 (329)
                      |+||||++ .++.|+++++.+||+|+.++++++++.+.++++.++.+++++++ .||.+++||.|+++||++|++ .||+
T Consensus       104 ~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~~~~~~~~a~~l~~~~~~~~~~~-~n~~~~~g~~t~~~EI~~q~~~~~d~  182 (353)
T PRK07409        104 AFVLIPEGKIALGKLAQAVMYGAEIIQIDGNFDDALEIVRELAEKYPVTLVNS-VNPYRIEGQKTAAFEIVDALGDAPDY  182 (353)
T ss_pred             EEEEEcCCCCchhhHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCceecCC-CCchhhhhHHHHHHHHHHHhCCCCCE
Confidence            99999998 68899999999999999999999999999999988877777776 589999999999999999997 7999


Q ss_pred             EEEeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCc---ccHHH
Q 020236          180 IIVPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD---LTWPI  250 (329)
Q Consensus       180 vv~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~---~~~~~  250 (329)
                      ||+|+||||+++|++.+|+...+      .+|+|+|||.++++++    .+...  +...++++++..+.+.   ..+..
T Consensus       183 iv~~vG~GG~~~Gi~~g~~~~~~~~~~~~~~kvigVep~g~~~~~----~g~~~--~~~~ti~~~l~~~~~~~~~~~~~~  256 (353)
T PRK07409        183 HCIPVGNAGNITAYWKGYKEYHQDGKSTKLPRMMGFQAAGAAPIV----RGEPV--KNPETIATAIRIGNPASWDKAVAA  256 (353)
T ss_pred             EEEeCCChHHHHHHHHHHHHHHHcCCccCCCeEEEEecCCCChHh----hCCcC--CCCcceeeeeecCCCCCHHHHHHH
Confidence            99999999999999999998743      4899999999987764    34332  2346788887654221   12344


Q ss_pred             HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      ++++.+..+.|+|+|++++++++++++|+++||+||++++++++.  .+++.+.++++||+++|| |++|++++.+.+.
T Consensus       257 ~~~~~~~~v~Vsd~e~~~a~~~l~~~egi~v~pssa~alaa~~~~--~~~~~~~~~~~VV~i~tg~g~k~~~~~~~~~~  333 (353)
T PRK07409        257 RDESGGLIDAVTDEEILEAYRLLARKEGVFCEPASAASVAGLLKA--IRAGKIPEGSTVVCTLTGNGLKDPDTAIKQAD  333 (353)
T ss_pred             HHHhCCEEEEECHHHHHHHHHHHHHhCCceeCchHHHHHHHHHHH--HHcCCCCCCCcEEEEecCccccchHHHHhhcc
Confidence            567788999999999999999999999999999999999999876  455445578899999999 9999999876543

>PRK06381 threonine synthase; Validated

Probab=100.00  E-value=6.5e-59  Score=428.21  Aligned_cols=289  Identities=21%  Similarity=0.309  Sum_probs=253.3

Q ss_pred             cccCCCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCE
Q 020236           24 LYIHKTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPA  102 (329)
Q Consensus        24 ~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~  102 (329)
                      ..+|+|||+++++|++.+| .+||+|+|++|||||||||++.+++.++.+ .+.++|+++|+||||+|+|++|+.+|++|
T Consensus        11 ~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~-~g~~~lv~aSsGN~g~alA~~aa~~G~~~   89 (319)
T PRK06381         11 KPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMR-LGYSGITVGTCGNYGASIAYFARLYGLKA   89 (319)
T ss_pred             ccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHH-cCCCEEEEeCCcHHHHHHHHHHHHcCCcE
Confidence            4589999999999998888 699999999999999999999999999855 46789999999999999999999999999


Q ss_pred             EEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC-Cc-ccccccCcchHHHHhhCC-CCCE
Q 020236          103 YIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN-DG-RIISGQGTISLEFLEQVP-LLDT  179 (329)
Q Consensus       103 ~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-n~-~~~~g~~t~~~Ei~~ql~-~~d~  179 (329)
                      ++|||+..++.|+++|+.+||+|+.++++++++.+.++++++++++|++++++ |+ ..++||.++++||++|++ .||+
T Consensus        90 ~ivvp~~~~~~~~~~l~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ql~~~~D~  169 (319)
T PRK06381         90 VIFIPRSYSNSRVKEMEKYGAEIIYVDGKYEEAVERSRKFAKENGIYDANPGSVNSVVDIEAYSAIAYEIYEALGDVPDA  169 (319)
T ss_pred             EEEECCCCCHHHHHHHHHcCCEEEEcCCCHHHHHHHHHHHHHHcCcEecCCCCCCcchHhhhHHHHHHHHHHHhCCCCCE
Confidence            99999999999999999999999999999999999999998888899999985 76 589999999999999998 6999


Q ss_pred             EEEeCCCChHHHHHHHHHHHh------CCCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccc-cccC-------CC
Q 020236          180 IIVPISGGGLISGVALAAKSI------KPAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADG-LRAF-------LG  244 (329)
Q Consensus       180 vv~~~GtGg~~~Gi~~~~k~~------~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~g-l~~~-------~~  244 (329)
                      ||+|+||||+++|++++|++.      .|.+++++|||.+++++..++..|...... ...++.+. +..+       .+
T Consensus       170 vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  249 (319)
T PRK06381        170 VAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMIGVSTSGGNQIVESFKRGSSEVVDLEVDEIRETAVNEPLVSYRSFDG  249 (319)
T ss_pred             EEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEEEEeeCCCCHHHHHHHcCCCcccCCCcchhhhcccCCCcccccCCCH
Confidence            999999999999999999998      789999999999999999999888654222 11233321 1111       11


Q ss_pred             cccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCC
Q 020236          245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGN  317 (329)
Q Consensus       245 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~  317 (329)
                      ...++.+.++.+..+.|+|+|+++++++|++++||++||++|+++|+++++  .+++.+  +++||+++|||-
T Consensus       250 ~~~~~~~~~~~g~~~~v~d~e~~~a~~~la~~egi~~epssa~alaa~~~~--~~~~~~--~~~vv~i~tGg~  318 (319)
T PRK06381        250 DNALEAIYDSHGYAFGFSDDEMVKYAELLRRMEGLNALPASASALAALVKY--LKKNGV--NDNVVAVITGRR  318 (319)
T ss_pred             HHHHHHHHHcCCEEEEECHHHHHHHHHHHHHhCCcccCchHHHHHHHHHHH--HHcCCC--CCcEEEEecCCC
Confidence            234667888999999999999999999999999999999999999999987  555543  489999999984

>TIGR01136 cysKM cysteine synthases

Probab=100.00  E-value=1.8e-59  Score=428.06  Aligned_cols=287  Identities=22%  Similarity=0.250  Sum_probs=246.9

Q ss_pred             ccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc-C--CeEEEECCchHHHHHHHHHHHcC
Q 020236           23 SLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA-I--KGVVTHSSGNHAAALSLAAKLRG   99 (329)
Q Consensus        23 ~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~-~--~~vv~~ssGN~g~a~A~~a~~~G   99 (329)
                      .+++++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+++. .  ++|+++|+||||+|+|++|+.+|
T Consensus         2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G   81 (299)
T TIGR01136         2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPGDTIIEATSGNTGIALAMVAAAKG   81 (299)
T ss_pred             ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcC
Confidence            46789999999999998888999999999999999999999999998865543 2  56999999999999999999999


Q ss_pred             CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEeeCCCCCccc-ccccCcchHHHHhhCC
Q 020236          100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEET-GAVLVHPYNDGRI-ISGQGTISLEFLEQVP  175 (329)
Q Consensus       100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei~~ql~  175 (329)
                      ++|+||||+..++.|+++|+.+||+|+.++++  ++++.+.+++++++. ++++++||+|+.+ ..||+++++||++|++
T Consensus        82 ~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql~  161 (299)
T TIGR01136        82 YKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDTD  161 (299)
T ss_pred             CcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999986  588888999998885 7889999999875 7889999999999998


Q ss_pred             -CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhc
Q 020236          176 -LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDL  254 (329)
Q Consensus       176 -~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~  254 (329)
                       +||+||+|+|+||+++|++.+|+..+|.+||++|||.++++++.+    ..... ..    .++...  ...+.+..++
T Consensus       162 ~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi~Ve~~~~~~~~~~----~~~~~-~~----~~i~~~--~~~~~~~~~~  230 (299)
T TIGR01136       162 GRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIVAVEPAESPVLSGG----EPGPH-KI----QGIGAG--FIPKILDLSL  230 (299)
T ss_pred             CCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEEEEecCCCccccCC----CCCCc-cC----CCCCCC--CCCccCChhh
Confidence             799999999999999999999999999999999999999877543    11100 11    233322  1122233567


Q ss_pred             CCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHH
Q 020236          255 VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVL  323 (329)
Q Consensus       255 ~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~  323 (329)
                      +|+++.|+|+|+++++++|++++|+++||+||+++++++++  .++. ..++++||+++|| |.+|++++
T Consensus       231 ~d~~~~V~d~e~~~a~~~l~~~~gi~~e~ssaa~~a~~~~~--~~~~-~~~~~~vv~i~~d~g~ky~~~~  297 (299)
T TIGR01136       231 IDEVITVSDEDAIETARRLAREEGILVGISSGAAVAAALKL--AKRL-ENADKVIVAILPDTGERYLSTG  297 (299)
T ss_pred             CCEEEEECHHHHHHHHHHHHHHhCceEcchHHHHHHHHHHH--HHhc-CCCCCEEEEEECCCCccccCcc
Confidence            89999999999999999999999999999999999999987  4442 2357899999998 89998863

This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.

>PRK06450 threonine synthase; Validated

Probab=100.00  E-value=5.3e-59  Score=428.89  Aligned_cols=274  Identities=24%  Similarity=0.314  Sum_probs=241.4

Q ss_pred             hccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCC
Q 020236           22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIP  101 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~  101 (329)
                      +....|+|||++.+        +||+|+|++|||||||||++.++++.+.+ .+.++|+++||||+|.|+|++|+.+|++
T Consensus        52 vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~-~g~~~vv~aSsGN~g~slA~~aa~~G~~  122 (338)
T PRK06450         52 ISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAE-KGIKQISEDSSGNAGASIAAYGAAAGIE  122 (338)
T ss_pred             CCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHH-cCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence            45678999999865        69999999999999999999999998855 4678999999999999999999999999


Q ss_pred             EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CCCE
Q 020236          102 AYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LLDT  179 (329)
Q Consensus       102 ~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~d~  179 (329)
                      |+||||+++++.|+++++.+||+|+.++++++++.+.    +++.+++|++++.||++++|++|+++||++|++  .||+
T Consensus       123 ~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~~~~~~~~----a~~~g~~~~~~~~np~~ieG~kTia~EI~eql~~~~pD~  198 (338)
T PRK06450        123 VKIFVPETASGGKLKQIESYGAEVVRVRGSREDVAKA----AENSGYYYASHVLQPQFRDGIRTLAYEIAKDLDWKIPNY  198 (338)
T ss_pred             EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHH----HHhcCeEeccCCCCccHHHHHHHHHHHHHHHcCCCCCCE
Confidence            9999999999999999999999999999998876554    455678899999999999999999999999997  5999


Q ss_pred             EEEeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC---CCcccHHH
Q 020236          180 IIVPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF---LGDLTWPI  250 (329)
Q Consensus       180 vv~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~---~~~~~~~~  250 (329)
                      ||+|+|+||+++|++++|+++.+      .+|+|+|||.++++++.++..+...+.+...|+++++..+   .....++.
T Consensus       199 vvvpvG~Ggll~Gi~~g~~el~~~G~i~~~prii~Vq~~g~~p~~~a~~~~~~~~~~~~~tia~~l~~~~p~~~~~~~~~  278 (338)
T PRK06450        199 VFIPVSAGTLLLGVYSGFKHLLDSGVISEMPKIVAVQTEQVSPLCAKFKGISYTPPDKVTSIADALVSTRPFLLDYMVKA  278 (338)
T ss_pred             EEEECCchHHHHHHHHHHHHHHhcCCccCCCeEEEEeeCCCCHHHHHhcCCCCCCCCCCCcceeeeecCCCCCHHHHHHH
Confidence            99999999999999999999864      4799999999999999999865544445678999998754   22345667


Q ss_pred             HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCC
Q 020236          251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVD  319 (329)
Q Consensus       251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~  319 (329)
                      +++. +..+.|+|+|+++++++|++ +|+++||+||+++||++++         ++++||+++|| |.++
T Consensus       279 i~~~-g~~v~V~d~ei~~a~~~La~-~Gi~vepssaaalAa~~~l---------~~~~vv~vltG~glK~  337 (338)
T PRK06450        279 LSEY-GECIVVSDNEIVEAWKELAK-KGLLVEYSSATVYAAYKKY---------SVNDSVLVLTGSGLKV  337 (338)
T ss_pred             HHhc-CcEEEECHHHHHHHHHHHHH-cCCEEChhHHHHHHHHHHC---------CCCCEEEEeCCCCccC
Confidence            7776 89999999999999999986 6999999999999999875         34789999999 5554

>PRK06721 threonine synthase; Reviewed

Probab=100.00  E-value=1.6e-58  Score=429.63  Aligned_cols=294  Identities=25%  Similarity=0.314  Sum_probs=253.6

Q ss_pred             HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI  100 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~  100 (329)
                      ++...+|+|||+++++|++..|.+||+|+|++|||||||||++.+++.++.++ +.++||++||||||+|+|++|+.+|+
T Consensus        21 ~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~-g~~~vV~aSsGN~G~alA~~aa~~G~   99 (352)
T PRK06721         21 DVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEE-GSEAIICASTGNTSASAAAYAARLGM   99 (352)
T ss_pred             ccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHC-CCCEEEEECCcHHHHHHHHHHHHCCC
Confidence            34556899999999999988889999999999999999999999999998544 56899999999999999999999999


Q ss_pred             CEEEEEcCCC-CHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCC
Q 020236          101 PAYIVIPKNA-PKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLD  178 (329)
Q Consensus       101 ~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d  178 (329)
                      +|++|||+.. ++.|+++|+.+||+|+.++++++++.+.+++++++.++++.+ +.||.+++||.|+++||++|++ .||
T Consensus       100 ~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~n~~~~~G~~t~~~Ei~eq~~~~~D  178 (352)
T PRK06721        100 KCIIVIPEGKIAHGKLAQAVAYGAEIISIEGNFDDALKAVRNIAAEEPITLVN-SVNPYRIEGQKTAAFEICDQLQRAPD  178 (352)
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhCCceecc-CCCchhhhhhhhHHHHHHHHhCCCCC
Confidence            9999999974 789999999999999999999999999999998888887776 4689999999999999999998 799


Q ss_pred             EEEEeCCCChHHHHHH----HHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCC-c--ccHHH
Q 020236          179 TIIVPISGGGLISGVA----LAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLG-D--LTWPI  250 (329)
Q Consensus       179 ~vv~~~GtGg~~~Gi~----~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~-~--~~~~~  250 (329)
                      +||+|+||||+++|++    +++|..+ |.++||+|||.+++++.    .+..  .+..+++++++..+.+ .  ..+..
T Consensus       179 ~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vigVep~~~~~~~----~g~~--~~~~~tia~~l~~~~~~~~~~~~~~  252 (352)
T PRK06721        179 VLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIHGFEAEGAAAIV----KGHV--IDEPETIATAIRIGNPASWSYAVEA  252 (352)
T ss_pred             EEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEEEEecCCCChHh----hCCc--CCCCCceeeccccCCCCCHHHHHHH
Confidence            9999999999999854    4455554 89999999999998754    3332  2345677788775421 1  22344


Q ss_pred             HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHH
Q 020236          251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLW  324 (329)
Q Consensus       251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~  324 (329)
                      ++.++|.++.|+|+|++++++++++++|+++||++|+++++++++  .+++.+.++++||+++|| |.+|++.+.
T Consensus       253 ~~~~~~~~~~V~d~e~~~a~~~la~~eGi~vepssgaalaa~~~~--~~~~~~~~~~~Vv~v~~g~g~k~~~~~~  325 (352)
T PRK06721        253 AEQSHGEIDMVSDEEILHAYRLLAKSEGVFAEPGSNASLAGVMKH--VQSGKIKKGETVVAVLTGNGLKDPDIAI  325 (352)
T ss_pred             HHhcCCEEEEECHHHHHHHHHHHHHhcCcccCchHHHHHHHHHHH--HHcCCCCCCCeEEEEeCCCCcCchHHHh
Confidence            567899999999999999999999999999999999999999987  555555678999999998 689998885

>PLN02569 threonine synthase

Probab=100.00  E-value=1.9e-58  Score=440.82  Aligned_cols=298  Identities=20%  Similarity=0.207  Sum_probs=263.7

Q ss_pred             hccccCCCCCccchhhhhh-cC-CeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHHHH
Q 020236           22 ISLYIHKTPVLSSETLNSM-SG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~l~~~-~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~~a   95 (329)
                      +....|+|||+++++|++. +| .+||+|+|++|||||||||++.+++..+.+.+.    ...|+++||||||.|+|++|
T Consensus       127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya  206 (484)
T PLN02569        127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC  206 (484)
T ss_pred             eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence            3456699999999999887 78 599999999999999999999999988754322    25699999999999999999


Q ss_pred             HHcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhC
Q 020236           96 KLRGIPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQV  174 (329)
Q Consensus        96 ~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql  174 (329)
                      +.+|++|+||+|++ .+..|+.+++.+||+|+.++++++++.+.+++++++.++|+++++ ||++++||+|+++||++|+
T Consensus       207 a~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~~d~a~~~a~e~~~~~~~~~~n~~-Np~~ieG~kT~a~EI~eQl  285 (484)
T PLN02569        207 AAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTDFDGCMRLIREVTAELPIYLANSL-NSLRLEGQKTAAIEILQQF  285 (484)
T ss_pred             HhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHHcCCEecCCC-CcchhHhHHHHHHHHHHHc
Confidence            99999999999997 788999999999999999999999999999999888889999998 8999999999999999999


Q ss_pred             C-C-CCEEEEeCCCChHHHHHHHHHHHhC------CCCEEEEEecCCCchHHHHHHcCCe--eecCCCCccccccccCCC
Q 020236          175 P-L-LDTIIVPISGGGLISGVALAAKSIK------PAIRILAAEPIGANDAAQSKAAGRI--ITLLETNTVADGLRAFLG  244 (329)
Q Consensus       175 ~-~-~d~vv~~~GtGg~~~Gi~~~~k~~~------~~~~vi~v~~~~~~~~~~~~~~g~~--~~~~~~~t~~~gl~~~~~  244 (329)
                      + + ||+||+|+|+||+++|++++|+++.      +.+|+|+||+.+++++++++..|..  .+....+|+++++..+.+
T Consensus       286 ~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~~~G~i~~~Priv~Vqa~g~~pl~~a~~~G~~~~~~~~~~~T~A~gi~i~~P  365 (484)
T PLN02569        286 DWEVPDWVIVPGGNLGNIYAFYKGFKMCKELGLVDRLPRLVCAQAANANPLYRAYKSGWEEFKPVKANPTFASAIQIGDP  365 (484)
T ss_pred             CCCCCCEEEEeCCchHHHHHHHHHHHHHHHcCCCCCCCeEEEEeeCCCcHHHHHHHcCCCccccCCCCCccchhhccCCC
Confidence            8 4 9999999999999999999999874      4579999999999999999998864  344467889999886522


Q ss_pred             c---ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCCh
Q 020236          245 D---LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDL  320 (329)
Q Consensus       245 ~---~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~  320 (329)
                      .   ..+..+++..+.++.|+|+|+++++++ ++++|+++||+||++++|++++  .+++.+.++++||+++|| |.+|.
T Consensus       366 ~~~~~~l~al~~s~g~~v~VsDeEi~~a~~~-a~~~Gi~vepssAaalAal~kl--~~~g~i~~~~~VV~i~Tg~GlK~~  442 (484)
T PLN02569        366 VSIDRAVYALKESNGIVEEATEEELMDAQAE-ADKTGMFLCPHTGVALAALKKL--RASGVIGPTDRTVVVSTAHGLKFT  442 (484)
T ss_pred             ccHHHHHHHHHHhCCEEEEECHHHHHHHHHH-HHHCCcEECchHHHHHHHHHHH--HHcCCCCCCCcEEEEeCCCcccCh
Confidence            2   345566777778899999999999999 8999999999999999999987  677767788999999999 78888


Q ss_pred             HHH
Q 020236          321 GVL  323 (329)
Q Consensus       321 ~~~  323 (329)
                      +..
T Consensus       443 ~~~  445 (484)
T PLN02569        443 QSK  445 (484)
T ss_pred             hHH
Confidence            754

>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase

Probab=100.00  E-value=5.7e-59  Score=423.48  Aligned_cols=280  Identities=24%  Similarity=0.314  Sum_probs=246.4

Q ss_pred             CCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHHcCCCEE
Q 020236           27 HKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKLRGIPAY  103 (329)
Q Consensus        27 ~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~~G~~~~  103 (329)
                      |+|||+++++|++..|.+||+|+|++|||||||+|++.+++..+.+++.   ..+|+++|+||||+|+|++|+++|++|+
T Consensus         1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~~vv~~SsGN~g~alA~~a~~~G~~~~   80 (291)
T cd01561           1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPGTTIIEPTSGNTGIGLAMVAAAKGYRFI   80 (291)
T ss_pred             CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChHHHHHHHHHHHcCCeEE
Confidence            6899999999998888999999999999999999999999999865543   2679999999999999999999999999


Q ss_pred             EEEcCCCCHHHHHHHHHcCCEEEEECCCH----HHHHHHHHHHHHHc-CCEeeCCCCCcccccccC-cchHHHHhhCC-C
Q 020236          104 IVIPKNAPKCKVENVVRYGGQVIWSEATM----HSRESVASKVLEET-GAVLVHPYNDGRIISGQG-TISLEFLEQVP-L  176 (329)
Q Consensus       104 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~-t~~~Ei~~ql~-~  176 (329)
                      +|+|++.++.|+++++.+||+|+.+++++    +++.+.+++++++. +++|++||+||.+++|+. ++++||++|++ .
T Consensus        81 i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~~  160 (291)
T cd01561          81 IVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDGK  160 (291)
T ss_pred             EEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999876    78888899988876 899999999999989876 99999999998 7


Q ss_pred             CCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCC
Q 020236          177 LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVD  256 (329)
Q Consensus       177 ~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~  256 (329)
                      ||+||+|+|+||+++|++.+|+...|.++||+|||.+++++     .+    .....++++|++.+.  ..+.....+++
T Consensus       161 ~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~-----~~----~~~~~~~~~gi~~~~--~~~~~~~~~~~  229 (291)
T cd01561         161 VDAFVAGVGTGGTITGVARYLKEKNPNVRIVGVDPVGSVLF-----SG----GPPGPHKIEGIGAGF--IPENLDRSLID  229 (291)
T ss_pred             CCEEEEeCChHHHHHHHHHHHHHhCCCCEEEEEecCCCccc-----CC----CCCCCCcCCCCCCCC--CCCccCchhCc
Confidence            99999999999999999999999999999999999999865     11    112345667776541  12223455889


Q ss_pred             cEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChH
Q 020236          257 DVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLG  321 (329)
Q Consensus       257 ~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~  321 (329)
                      .++.|+|+|++++++.+++++|+++||+||+++++++++  .++.  .++++||+|+|| |.+|+|
T Consensus       230 ~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~a~~~~~--~~~~--~~~~~vv~v~~~~g~ky~~  291 (291)
T cd01561         230 EVVRVSDEEAFAMARRLAREEGLLVGGSSGAAVAAALKL--AKRL--GPGKTIVTILPDSGERYLS  291 (291)
T ss_pred             eeEEECHHHHHHHHHHHHHHhCeeEcccHHHHHHHHHHH--HHhc--CCCCeEEEEECCCccccCC
Confidence            999999999999999999999999999999999999987  4443  267899999998 788864

CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.

>PLN02556 cysteine synthase/L-3-cyanoalanine synthase

Probab=100.00  E-value=7.2e-59  Score=431.85  Aligned_cols=291  Identities=21%  Similarity=0.253  Sum_probs=247.1

Q ss_pred             HHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhc----cCCeEEEECCchHHHHHHH
Q 020236           18 AQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ----AIKGVVTHSSGNHAAALSL   93 (329)
Q Consensus        18 ~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~----~~~~vv~~ssGN~g~a~A~   93 (329)
                      .++++...+++|||+++++++...|.+||+|+|++|||||||||++.+++.++++++    +..+||++|+||||+|+|+
T Consensus        49 ~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~alA~  128 (368)
T PLN02556         49 IKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISLAF  128 (368)
T ss_pred             hhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHHHH
Confidence            346777889999999999998878899999999999999999999999999987654    2467999999999999999


Q ss_pred             HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHH-cCCEeeCCCCCcccc-cccCcchHH
Q 020236           94 AAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEE-TGAVLVHPYNDGRII-SGQGTISLE  169 (329)
Q Consensus        94 ~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~-~g~~t~~~E  169 (329)
                      +|+.+|++|++|+|++++..|+++|+.+||+|+.++..  .....+.+++++++ ++++|++||+||.+. .||.++++|
T Consensus       129 ~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg~E  208 (368)
T PLN02556        129 MAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTGPE  208 (368)
T ss_pred             HHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999753  33566777777766 478999999999987 599999999


Q ss_pred             HHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccH
Q 020236          170 FLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTW  248 (329)
Q Consensus       170 i~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~  248 (329)
                      |++|+. .+|+||+|+|||||++|+++++|+.+|++|||+|||.+++.+    ..+...    .+. ..|++.+..+.. 
T Consensus       209 I~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVigVep~~~~~~----~~g~~~----~~~-i~g~g~~~~p~~-  278 (368)
T PLN02556        209 IWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIYGVEPAESNVL----NGGKPG----PHH-ITGNGVGFKPDI-  278 (368)
T ss_pred             HHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEEEEeeCCCccc----cCCCCC----Cee-eeeccCCCCccc-
Confidence            999985 799999999999999999999999999999999999998653    334321    112 244443311222 


Q ss_pred             HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                       +..+++|+++.|+|+|++++++++++++|+++||+||+++++++++  +++. ..++++||+|+|| |.+|+++
T Consensus       279 -~~~~~~d~~v~Vsd~ea~~a~r~l~~~eGi~vg~ssgA~~~aal~~--a~~~-~~~~~~IV~v~~d~g~kY~~~  349 (368)
T PLN02556        279 -LDMDVMEKVLEVSSEDAVNMARELALKEGLMVGISSGANTVAALRL--AKMP-ENKGKLIVTVHPSFGERYLSS  349 (368)
T ss_pred             -cchhhCCeEEEECHHHHHHHHHHHHHHcCCEEecCHHHHHHHHHHH--hhhc-cCCcCEEEEEECCCCcccCCh
Confidence             2356889999999999999999999999999999999998888876  4443 2367899999998 8999987

>TIGR01138 cysM cysteine synthase B

Probab=100.00  E-value=1.2e-58  Score=419.67  Aligned_cols=278  Identities=18%  Similarity=0.256  Sum_probs=241.3

Q ss_pred             hccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHHc
Q 020236           22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKLR   98 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~~   98 (329)
                      +.+.+++|||+++++|+...|.+||+|+|++|||||||||++.+++..+.+++.   .++|+++|+||||.|+|++|+.+
T Consensus         2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~   81 (290)
T TIGR01138         2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALK   81 (290)
T ss_pred             hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHc
Confidence            346689999999999988888999999999999999999999999999866543   26799999999999999999999


Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHcCCEeeCCCCCccccc-ccCcchHHHHhhCC
Q 020236           99 GIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEETGAVLVHPYNDGRIIS-GQGTISLEFLEQVP  175 (329)
Q Consensus        99 G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~-g~~t~~~Ei~~ql~  175 (329)
                      |++|++|+|++.++.|+++|+.+||+|+.+++  +++++.+.+++++++.+.+|++||+|+.++. ||.++++||++|++
T Consensus        82 G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~  161 (290)
T TIGR01138        82 GYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGEGKLLDQFNNPDNPYAHYTSTGPEIWQQTG  161 (290)
T ss_pred             CCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCCCCCccCCcccHHHHhHhHHHHHHHHcC
Confidence            99999999999999999999999999999986  4788888999998887767899999988665 57999999999998


Q ss_pred             -CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhc
Q 020236          176 -LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDL  254 (329)
Q Consensus       176 -~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~  254 (329)
                       ++|+||+|+||||+++|++.+||+.+|++|||+|||.+++++.     +       ..++..++.+.    .++  ...
T Consensus       162 ~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi~Vep~~~~~~~-----g-------~~~~~~~~~~~----~~~--~~~  223 (290)
T TIGR01138       162 GRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIVGLQPEEGSSIP-----G-------IRRWPTEYLPG----IFD--ASL  223 (290)
T ss_pred             CCCCEEEECCCchHHHHHHHHHHHHhCCCCEEEEEeCCCCCCcc-----C-------CCCCCCCcCCc----ccC--hhh
Confidence             7999999999999999999999999999999999999886531     1       11222222221    122  456


Q ss_pred             CCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          255 VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       255 ~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      +|+++.|+|+|+++++++|++++|+++|||||+++++++++  +++  + ++++||+|+|| |.+|+++
T Consensus       224 ~d~~v~V~d~e~~~a~~~l~~~~gi~~g~ssga~laa~~~~--~~~--~-~~~~vv~v~~d~g~ky~~~  287 (290)
T TIGR01138       224 VDRVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAAALRL--ARE--L-PDAVVVAIICDRGDRYLST  287 (290)
T ss_pred             CcEEEEECHHHHHHHHHHHHHHhCceEcHhHHHHHHHHHHH--HHH--C-CCCeEEEEECCCCccccCc
Confidence            89999999999999999999999999999999999999986  433  2 56899999998 8999885

Alternate name: O-acetylserine (thiol)-lyase

>PRK08329 threonine synthase; Validated

Probab=100.00  E-value=4.4e-58  Score=425.79  Aligned_cols=277  Identities=25%  Similarity=0.326  Sum_probs=247.2

Q ss_pred             cccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEE
Q 020236           24 LYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAY  103 (329)
Q Consensus        24 ~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~  103 (329)
                      ..-|.|||+++.       .+||+|+|++|||||||||++.+++..+.+ .+.++|+++|+||||+|+|++|+++|++|+
T Consensus        60 l~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~-~g~~~vv~aSsGN~g~alA~~aa~~G~~~~  131 (347)
T PRK08329         60 LTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKE-EGINEVVIDSSGNAALSLALYSLSEGIKVH  131 (347)
T ss_pred             CCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHH-cCCCEEEEECCCcHHHHHHHHHHHcCCcEE
Confidence            345889999873       489999999999999999999999998854 466899999999999999999999999999


Q ss_pred             EEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEEEe
Q 020236          104 IVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP  183 (329)
Q Consensus       104 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv~~  183 (329)
                      ||||+++++.|+.+++.+||+|+.++++++++.+.+++++++.+++|++++.||++++|++|+++||++|++.||+||+|
T Consensus       132 v~vp~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~~~~~~~~~~~np~~~eG~~t~~~Ei~eql~~pD~vvvp  211 (347)
T PRK08329        132 VFVSYNASKEKISLLSRLGAELHFVEGDRMEVHEEAVKFSKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQIGVPDYAFVP  211 (347)
T ss_pred             EEECCCChHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeeccCCCCchhhccchhHHHHHHHHcCCCCEEEEe
Confidence            99999999999999999999999999988888888888888888889999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhC------CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCC---cccHHHHhhc
Q 020236          184 ISGGGLISGVALAAKSIK------PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLG---DLTWPIVRDL  254 (329)
Q Consensus       184 ~GtGg~~~Gi~~~~k~~~------~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~---~~~~~~~~~~  254 (329)
                      +|+||+++|++++|+++.      +.+|+|+|||.++++++..+        ....++++|+..+..   ...+++++++
T Consensus       212 vG~Gg~l~Gi~~g~kel~~~g~i~~~p~ii~Vq~~g~~~~~~~~--------~~~~t~a~gi~i~~~~~~~~~~~~l~~~  283 (347)
T PRK08329        212 VGSGTLFLGIWKGFKELHEMGEISKMPKLVAVQAEGYESLCKRS--------KSENKLADGIAIPEPPRKEEMLRALEES  283 (347)
T ss_pred             CCcHHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCchHHhcc--------CCCCceeeeEEeCCCCCHHHHHHHHHHh
Confidence            999999999999999974      56899999999998876421        245688888886522   2356788899


Q ss_pred             CCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCC-CC
Q 020236          255 VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGN-VD  319 (329)
Q Consensus       255 ~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~-~~  319 (329)
                      .+..+.|+|+|++++++++++ +|+++||+||+++|+++++  .+++.+.++++||+++||++ +|
T Consensus       284 ~g~~~~V~d~e~~~a~~~l~~-~Gi~vepssa~a~Aa~~~l--~~~g~i~~~~~Vv~~~TG~glK~  346 (347)
T PRK08329        284 NGFCISVGEEETRAALHWLRR-MGFLVEPTSAVALAAYWKL--LEEGLIEGGSKVLLPLSGSGLKN  346 (347)
T ss_pred             CCEEEEECHHHHHHHHHHHHh-cCceECccHHHHHHHHHHH--HHhCCCCCCCeEEEEeCCCCccC
Confidence            999999999999999999985 8999999999999999987  77887888999999999954 54

>PLN00011 cysteine synthase

Probab=100.00  E-value=1.9e-58  Score=424.58  Aligned_cols=295  Identities=18%  Similarity=0.230  Sum_probs=248.9

Q ss_pred             HHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHH
Q 020236           14 SIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAA   89 (329)
Q Consensus        14 ~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~   89 (329)
                      |.....+++.+.+++|||+++++++...|.+||+|+|++|||||||||++.+++..+.+++.    .++||++|+||||+
T Consensus         3 ~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g~   82 (323)
T PLN00011          3 DRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTGI   82 (323)
T ss_pred             chhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHHH
Confidence            33445566777899999999999886666899999999999999999999999999876642    47899999999999


Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCH--HHHHHHHHHHHHH-cCCEeeCCCCCccc-ccccCc
Q 020236           90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATM--HSRESVASKVLEE-TGAVLVHPYNDGRI-ISGQGT  165 (329)
Q Consensus        90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~a~~~~~~-~~~~~~~~~~n~~~-~~g~~t  165 (329)
                      |+|++|+.+|++|++|+|+++++.|+++++.+||+|+.++.+.  +++.+.+++++++ +++++++||+|+.+ ..||.+
T Consensus        83 alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~t  162 (323)
T PLN00011         83 GLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYRT  162 (323)
T ss_pred             HHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHHH
Confidence            9999999999999999999999999999999999999998753  3456678888777 47899999998864 458999


Q ss_pred             chHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCC
Q 020236          166 ISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLG  244 (329)
Q Consensus       166 ~~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~  244 (329)
                      +++||++|++ +||+||+|+||||+++|+++++|+.+|++|||+|||.+++++.    .+++     ..++++|++.+..
T Consensus       163 ~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~~  233 (323)
T PLN00011        163 TGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVCVVEPVESAVLS----GGQP-----GPHLIQGIGSGII  233 (323)
T ss_pred             HHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEEEEecCCCcccC----CCCC-----CCCCCCCCCCCCC
Confidence            9999999987 7999999999999999999999999999999999999997652    3332     2345667665311


Q ss_pred             cccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeC-CCCCChHH
Q 020236          245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLS-GGNVDLGV  322 (329)
Q Consensus       245 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~t-gg~~~~~~  322 (329)
                      +..+  ..+.+|+++.|+|+|++++++++++++|+++||+||++++++++.  .++.. .++++||+|+| ||++|+|+
T Consensus       234 ~~~~--~~~~~d~~v~V~d~e~~~a~~~l~~~~Gi~~~~ssga~laaa~~~--~~~~~-~~~~~vv~i~~d~G~ky~~~  307 (323)
T PLN00011        234 PFNL--DLTIVDEIIQVTGEEAIETAKLLALKEGLLVGISSGAAAAAALKV--AKRPE-NAGKLIVVIFPSGGERYLST  307 (323)
T ss_pred             Cccc--ChhhCCeEEEECHHHHHHHHHHHHHhcCCeEcccHHHHHHHHHHH--HHhcc-CCCCeEEEEECCCccccCCh
Confidence            2222  245788999999999999999999999999999999999999986  44332 25778999995 58999986

>TIGR01139 cysK cysteine synthase A

Probab=100.00  E-value=8.9e-59  Score=423.40  Aligned_cols=283  Identities=24%  Similarity=0.293  Sum_probs=241.7

Q ss_pred             ccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHHcC
Q 020236           23 SLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKLRG   99 (329)
Q Consensus        23 ~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~~G   99 (329)
                      .+.+++|||+++++ ....|.+||+|+|++|||||||||++.+++..+.+++.   ..+|+++|+||||+|+|++|+++|
T Consensus         2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~alA~~a~~~G   80 (298)
T TIGR01139         2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPGKTIVEPTSGNTGIALAMVAAARG   80 (298)
T ss_pred             ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCCCEEEEeCCChhHHHHHHHHHHcC
Confidence            45789999999998 45567899999999999999999999999998865543   256999999999999999999999


Q ss_pred             CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCH--HHHHHHHHHHHHHcC--CEeeCCCCCcc-cccccCcchHHHHhhC
Q 020236          100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEATM--HSRESVASKVLEETG--AVLVHPYNDGR-IISGQGTISLEFLEQV  174 (329)
Q Consensus       100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~a~~~~~~~~--~~~~~~~~n~~-~~~g~~t~~~Ei~~ql  174 (329)
                      ++|+||+|+++++.|+++|+.+||+|+.+++++  .++.+.+++++++.+  +++++||+||. ...||.++++||++|+
T Consensus        81 l~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~  160 (298)
T TIGR01139        81 YKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRDT  160 (298)
T ss_pred             CeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999874  567778888888765  66899999998 5779999999999999


Q ss_pred             C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHh
Q 020236          175 P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVR  252 (329)
Q Consensus       175 ~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~  252 (329)
                      + .||+||+|+|+||+++|++.+|++.+|++|+|+|||.++++++.+    +.     ..+..+|++.+ ++.   .+..
T Consensus       161 ~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi~Ve~~~~~~~~~~----~~-----~~~~~~gl~~~~~~~---~~~~  228 (298)
T TIGR01139       161 DGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIVAVEPAESPVLSGG----KP-----GPHKIQGIGAGFIPK---NLNR  228 (298)
T ss_pred             CCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEEEEecCCCcccCCC----CC-----CCCCCCCCCCCCCCC---ccCh
Confidence            8 799999999999999999999999999999999999998765422    11     12233455432 121   2224


Q ss_pred             hcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          253 DLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       253 ~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      +.+|+++.|+|+|++++++++++++|+++||+||+++++++++  .+.  +.++++||+++|| |.+|+++
T Consensus       229 ~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~laa~~~~--~~~--~~~~~~vv~v~~d~G~ky~~~  295 (298)
T TIGR01139       229 SVIDEVITVSDEEAIETARRLAAEEGILVGISSGAAVAAALKL--AKR--PEPDKLIVVILPSTGERYLST  295 (298)
T ss_pred             hhCCEEEEECHHHHHHHHHHHHHhcCceEcccHHHHHHHHHHH--HHh--cCCCCEEEEEECCCCccccCc
Confidence            5788999999999999999999999999999999999999987  433  2367899999998 7899875

This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.

>PRK05638 threonine synthase; Validated

Probab=100.00  E-value=3.9e-58  Score=439.13  Aligned_cols=290  Identities=22%  Similarity=0.284  Sum_probs=257.9

Q ss_pred             hccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCC
Q 020236           22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIP  101 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~  101 (329)
                      +...+|+|||++++ +++.+|.+||+|+|++|||||||||++.+++.++.+. +.++|+++||||||+|+|++|+.+|++
T Consensus        60 v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~-g~~~vv~aSsGN~g~alA~~aa~~G~~  137 (442)
T PRK05638         60 ISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPY-AANGFIVASDGNAAASVAAYSARAGKE  137 (442)
T ss_pred             cccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHc-CCCEEEEeCCChHHHHHHHHHHHcCCC
Confidence            44578999999994 7777888999999999999999999999999988554 678899999999999999999999999


Q ss_pred             EEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEEE
Q 020236          102 AYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTII  181 (329)
Q Consensus       102 ~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~vv  181 (329)
                      |+||||+++++.|+++++.+||+|+.++++++++.+.+++++++.++|++++++||++++|++|+++||++|++ ||+||
T Consensus       138 ~~i~vp~~~~~~k~~~~~~~GA~vi~v~~~~~~~~~~a~~~~~~~~~~~~~~~~np~~~eG~~t~a~Ei~eq~~-pD~vv  216 (442)
T PRK05638        138 AFVVVPRKVDKGKLIQMIAFGAKIIRYGESVDEAIEYAEELARLNGLYNVTPEYNIIGLEGQKTIAFELWEEIN-PTHVI  216 (442)
T ss_pred             EEEEEeCCCCHHHHHHHHhcCcEEEEECCCHHHHHHHHHHHHHhCCeEecCCCCChhHhhhHHHHHHHHHHHHC-cCEEE
Confidence            99999999999999999999999999999999999999999888899999999999999999999999999997 99999


Q ss_pred             EeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC---CCcccHHHHh
Q 020236          182 VPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF---LGDLTWPIVR  252 (329)
Q Consensus       182 ~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~---~~~~~~~~~~  252 (329)
                      +|+|+||+++|++++|+++.+      .+|||+|||.+++++.+++..+...   ...+++.|+...   .+...++.++
T Consensus       217 ~pvG~Gg~~~Gi~~gfkel~~~g~i~~~prii~Vq~~~~~p~~~~~~~~~~~---~~~t~a~gl~~~~p~~~~~~~~~i~  293 (442)
T PRK05638        217 VPTGSGSYLYSIYKGFKELLEIGVIEEIPKLIAVQTERCNPIASEILGNKTK---CNETKALGLYVKNPVMKEYVSEAIK  293 (442)
T ss_pred             EeCCchHHHHHHHHHHHHHHhCCcccCCCeEEEEecCCCCHHHHHHhcCCCC---CCCceeeeEeeCCCCCHHHHHHHHH
Confidence            999999999999999999865      3799999999999999998876432   356777777543   2334567778


Q ss_pred             hcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCCh
Q 020236          253 DLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDL  320 (329)
Q Consensus       253 ~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~  320 (329)
                      ++.+..+.|+|+++.++++.++ ++||++||+||+++||++++  .+++.+.++++||+++|| |.++.
T Consensus       294 ~~~g~~~~v~d~~i~~a~~~l~-~eGi~~epssaaa~Aa~~~~--~~~g~i~~~~~Vv~i~tG~g~k~~  359 (442)
T PRK05638        294 ESGGTAVVVNEEEIMAGEKLLA-KEGIFAELSSAVVMPALLKL--GEEGYIEKGDKVVLVVTGSGLKGY  359 (442)
T ss_pred             HhCCEEEEECHHHHHHHHHHHH-hcCceecchHHHHHHHHHHH--HHcCCCCCCCeEEEEeCCCCCCCC
Confidence            8889999999999999988876 58999999999999999987  677767789999999999 55663

>TIGR00260 thrC threonine synthase

Probab=100.00  E-value=3.9e-57  Score=418.25  Aligned_cols=297  Identities=22%  Similarity=0.243  Sum_probs=257.0

Q ss_pred             HhccccCCCCCccchhhhhhcCC-eEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236           21 RISLYIHKTPVLSSETLNSMSGR-SLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG   99 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~-~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G   99 (329)
                      .+...+++|||+++++|+..+|. +||+|+|++|||||||||++.+++.++.+ .+..+|+++||||||+|+|++|+.+|
T Consensus        16 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~-~g~~~vv~aSsGN~g~a~A~~a~~~g   94 (328)
T TIGR00260        16 LVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALE-LGNDTVLCASTGNTGAAAAAYAGKAG   94 (328)
T ss_pred             hhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHH-cCCCEEEEeCCcHHHHHHHHHhccCC
Confidence            34556799999999999888886 99999999999999999999999998854 45678999999999999999999999


Q ss_pred             CCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCC-cccccccCcchHHHHhhCC--
Q 020236          100 IPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYND-GRIISGQGTISLEFLEQVP--  175 (329)
Q Consensus       100 ~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n-~~~~~g~~t~~~Ei~~ql~--  175 (329)
                      ++|+|++|++ .++.|++.++.+||+|+.++++++++.+.++++.++.++++.+++++ |.+++||.++++||++|++  
T Consensus        95 ~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~g~~t~~~Ei~~q~~~~  174 (328)
T TIGR00260        95 VKVVILYPAGKISLGKLAQALGYNAEVVAIDGNFDDAQRLVKQLFGDKEALGLNSVNSIPYRLEGQKTYAFEAVEQLGWE  174 (328)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCcEEEEecCCHHHHHHHHHHHHhhcCeeecccCCCCCeEeeeehhHHHHHHHHhCCC
Confidence            9999999998 89999999999999999999999999999999888766666665432 8899999999999999997  


Q ss_pred             CCCEEEEeCCCChHHHHHHHHHHHhCC-----CCEEEEEecCCCchHHHHHH-cCCeeecCCCCccccccccCC---Ccc
Q 020236          176 LLDTIIVPISGGGLISGVALAAKSIKP-----AIRILAAEPIGANDAAQSKA-AGRIITLLETNTVADGLRAFL---GDL  246 (329)
Q Consensus       176 ~~d~vv~~~GtGg~~~Gi~~~~k~~~~-----~~~vi~v~~~~~~~~~~~~~-~g~~~~~~~~~t~~~gl~~~~---~~~  246 (329)
                      .||+||+|+|+||+++|++.+|+....     .+++++|||.+++++..++. .++........|++++++.+.   .+.
T Consensus       175 ~~d~iv~~vG~GG~~~G~~~~~~~~~~~g~~~~p~v~~Ve~~~~~~~~~~~~~~g~~~~~~~~~t~~~~l~~~~p~~~~~  254 (328)
T TIGR00260       175 APDKVVVPVPNSGNFGAILKGFKEKKEGGLDSLPVKRGIQAEGAADIVRAFLESGQWEPIEDPATLSTAIDIGNPANWER  254 (328)
T ss_pred             CCCEEEEECCCcchHHHHHHHHHHHHhcCCccCCceeEEEcCCCChHHHHHHcCCCcCcCCCCCccCcceecCCCCCHHH
Confidence            699999999999999999999998510     23999999999988877764 455555555578888886542   234


Q ss_pred             cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCC-CCCh
Q 020236          247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG-NVDL  320 (329)
Q Consensus       247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg-~~~~  320 (329)
                      .+++++++.++.+.|+|+|++++++++++++|+++||+||+++++++++  .+++.+.++++||+++||+ .++.
T Consensus       255 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~--~~~~~~~~~~~vv~i~tG~~~k~~  327 (328)
T TIGR00260       255 ALELFRRSNGNAEDVSDEEILEAIKLLAREEGYFVEPHSAVSVAALLKL--VEKGTADPAERVVCALTGNGLKDP  327 (328)
T ss_pred             HHHHHHhcCCcEEecCHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHH--HhCCCCCCCCcEEEEecCCCCCCC
Confidence            6677788999999999999999999999999999999999999999987  5555566789999999984 5654

Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=100.00  E-value=2e-56  Score=431.04  Aligned_cols=295  Identities=23%  Similarity=0.316  Sum_probs=246.5

Q ss_pred             HHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHH
Q 020236           20 KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAK   96 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~   96 (329)
                      +++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+++.   .++|+++|+||||+|+|++|+
T Consensus         3 ~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g~~vv~~ssGN~g~alA~~a~   82 (454)
T TIGR01137         3 DNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPGDTIIEPTSGNTGIGLALVAA   82 (454)
T ss_pred             cchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence            34566789999999999998778899999999999999999999999999866543   267999999999999999999


Q ss_pred             HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HH---HHHHHHHHHHHH-cCCEeeCCCCCcccc-cccCcchHH
Q 020236           97 LRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MH---SRESVASKVLEE-TGAVLVHPYNDGRII-SGQGTISLE  169 (329)
Q Consensus        97 ~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~---~~~~~a~~~~~~-~~~~~~~~~~n~~~~-~g~~t~~~E  169 (329)
                      .+|++|++|+|+++++.|+++++.+||+|+.++++  ++   ...+.+++++++ .+++|++||+|+.+. .||.++++|
T Consensus        83 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~E  162 (454)
T TIGR01137        83 IKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTGPE  162 (454)
T ss_pred             HcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhHHH
Confidence            99999999999999999999999999999999864  33   235567777776 478889999998864 789999999


Q ss_pred             HHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeec-CCCCccccccccCCCccc
Q 020236          170 FLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITL-LETNTVADGLRAFLGDLT  247 (329)
Q Consensus       170 i~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~-~~~~t~~~gl~~~~~~~~  247 (329)
                      |++|++ .||+||+|+||||+++|++.++|+.+|.++|++|||.+++     +..+..... ....+..+|++.+.  ..
T Consensus       163 i~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi~ve~~~~~-----~~~~~~~~~~~~~~~~~~g~~~~~--~~  235 (454)
T TIGR01137       163 ILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIVGADPEGSI-----LAQPENLNKTGRTPYKVEGIGYDF--IP  235 (454)
T ss_pred             HHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEEEEecCCCc-----ccCCCcccCCCCCCccCCCCCCCC--CC
Confidence            999998 7999999999999999999999999999999999999875     223322211 11134556665431  11


Q ss_pred             HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHH
Q 020236          248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLW  324 (329)
Q Consensus       248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~  324 (329)
                      +.+..+++|+.+.|+|+|++++++++++++|+++||+||++++|++++  +++ .+.++++||+++|| |.+|++++.
T Consensus       236 ~~~~~~~~d~~~~V~~~e~~~a~~~l~~~~gi~~~~ssg~~~aa~~~~--~~~-~~~~~~~vv~~~~d~g~~y~~~~~  310 (454)
T TIGR01137       236 TVLDRKVVDEWIKTDDKESFKMARRLIKEEGLLVGGSSGSAVVAALKA--AED-ELTEDQVIVVLLPDSIRNYMTKFL  310 (454)
T ss_pred             CcCCchhCCeEEEECHHHHHHHHHHHHHHhCccCcHHHHHHHHHHHHH--HHh-hcCCCCEEEEEECCCCccccCccc
Confidence            122356789999999999999999999999999999999999999987  443 34568899999997 789998763

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>TIGR03844 cysteate_syn cysteate synthase

Probab=100.00  E-value=1.3e-55  Score=413.66  Aligned_cols=294  Identities=19%  Similarity=0.154  Sum_probs=252.1

Q ss_pred             ccCCCCCccchhhhhhcCC-eEEEE-------ecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHH
Q 020236           25 YIHKTPVLSSETLNSMSGR-SLFFK-------CECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAK   96 (329)
Q Consensus        25 ~i~~TPl~~~~~l~~~~g~-~i~~K-------~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~   96 (329)
                      ..+.|||++.++|++.+|. +||+|       +|++|||||||||++.+++..+.+. +.++|+++|+||||.|+|++|+
T Consensus        59 ~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~-g~~~Vv~aSsGN~g~alA~~aa  137 (398)
T TIGR03844        59 TRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKER-GGKTLVVASAGNTGRAFAEVSA  137 (398)
T ss_pred             CCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHHHH
Confidence            3467999999999999996 99995       5559999999999999999988655 5788999999999999999999


Q ss_pred             HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCC
Q 020236           97 LRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPL  176 (329)
Q Consensus        97 ~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~  176 (329)
                      ++|++|+||||++.++.+...++.+|++|+.++++++++.+.+++++++.+++..++++||+.++|++|+++||++|+++
T Consensus       138 ~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g~~d~a~~~a~~~a~~~g~~~~~~~~~p~~ieG~~Ti~~Ei~eql~~  217 (398)
T TIGR03844       138 ITGQPVILVVPKSSADRLWTTEPASSVLLVTVDGDYTDAIALADRIATLPGFVPEGGARNVARRDGMGTVMLDAAVTIGS  217 (398)
T ss_pred             HcCCcEEEEECCChHHHHHHHhhCCcEEEEECCCCHHHHHHHHHHHHHhCCccccCCCCCHHHHhhHHHHHHHHHHHcCC
Confidence            99999999999986543333357899999999999999999999998887876566778999999999999999999985


Q ss_pred             -CCEEEEeCCCChHHHHHHHHHHHhC-------CCCEEEEEecCCCchHHHHHHcCCeeecCC---C-------Cccccc
Q 020236          177 -LDTIIVPISGGGLISGVALAAKSIK-------PAIRILAAEPIGANDAAQSKAAGRIITLLE---T-------NTVADG  238 (329)
Q Consensus       177 -~d~vv~~~GtGg~~~Gi~~~~k~~~-------~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~---~-------~t~~~g  238 (329)
                       ||+||+|+|+|+.+.|++.+++++.       .-+++++||++++++++++++.|.....+.   +       .+++++
T Consensus       218 ~PD~VvvPvG~G~~~~~~~~~~~~l~~~g~i~~~~P~l~~VQ~eg~~p~~~a~~~g~~~~~~~~~~~~~~~~~~~t~a~~  297 (398)
T TIGR03844       218 LPDHYFQAVGSGTGGIAAWEAAMRLIEDGRFGSKLPRLHLAQNLPFVPMVNAWQEGRREIIPESDMPDAENSIEEVYSDV  297 (398)
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHHHHcCCccCCCCCEEEEEcCCchHHHHHHHcCCCccccccCCccccccccceecce
Confidence             9999999999988999999988842       337889999999999999999987542211   1       578888


Q ss_pred             cccC-C-Cc---ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEe
Q 020236          239 LRAF-L-GD---LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVL  313 (329)
Q Consensus       239 l~~~-~-~~---~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~  313 (329)
                      +... + ..   ..++.++++.+.++.|+|+|+.+|++.|++++|+++||+||+++||++++  .+++.+.++++||+++
T Consensus       298 l~i~~p~~~~~~~~l~air~~~g~~v~Vsd~eI~~A~~~l~~~~gi~vEpa~A~alAal~k~--~~~g~i~~~~~Vv~vl  375 (398)
T TIGR03844       298 LTNRTPPYGVTGGVFDALIATGGQMYGVSNKEAVSAGKLFEESEGIDILPAAAVAVAALVKA--VESGFIGPDDDILLNI  375 (398)
T ss_pred             eeeCCCCcchHHHHHHHHHHhCCEEEEECHHHHHHHHHHHHhhCCccccccHHHHHHHHHHH--HHhCCCCCCCeEEEEE
Confidence            8654 2 11   24788899999999999999999999999999999999999999999987  6677777889999999


Q ss_pred             CCCC-CChH
Q 020236          314 SGGN-VDLG  321 (329)
Q Consensus       314 tgg~-~~~~  321 (329)
                      ||++ +++.
T Consensus       376 TG~glK~~~  384 (398)
T TIGR03844       376 TGGGYKRLR  384 (398)
T ss_pred             CCcchhhHH
Confidence            9954 4443

Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.

>TIGR00263 trpB tryptophan synthase, beta subunit

Probab=100.00  E-value=7.2e-55  Score=408.78  Aligned_cols=316  Identities=21%  Similarity=0.209  Sum_probs=252.6

Q ss_pred             CCCCCCHHHHHHHHHHhccccC-CCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEEC
Q 020236            6 EKYAANFSSIKEAQKRISLYIH-KTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHS   83 (329)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~i~-~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~s   83 (329)
                      ++...+.+.+.+..+.+..+++ +|||+++++|++.+| .+||+|+|++|||||||||.+..++..+.+.+....|+++|
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~vi~e~s  106 (385)
T TIGR00263        27 EDAKADPAFWAELNELLRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKKRIIAETG  106 (385)
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCCCEEEEEcC
Confidence            3344555555555555666775 999999999999888 89999999999999999999999998775544333455689


Q ss_pred             CchHHHHHHHHHHHcCCCEEEEEcCC-CCH--HHHHHHHHcCCEEEEECC---CHHHHH-HHHHHHHHH-cCCEee-CCC
Q 020236           84 SGNHAAALSLAAKLRGIPAYIVIPKN-APK--CKVENVVRYGGQVIWSEA---TMHSRE-SVASKVLEE-TGAVLV-HPY  154 (329)
Q Consensus        84 sGN~g~a~A~~a~~~G~~~~i~~p~~-~~~--~~~~~~~~~Ga~v~~~~~---~~~~~~-~~a~~~~~~-~~~~~~-~~~  154 (329)
                      +||||+|+|++|+.+|++|+||||+. .+.  .++++|+.+||+|+.++.   .++++. +.+++++++ .+.+|+ +++
T Consensus       107 sGN~G~alA~~a~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~  186 (385)
T TIGR00263       107 AGQHGVATATAAALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSA  186 (385)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCc
Confidence            99999999999999999999999986 443  578899999999999974   366653 445555655 455565 455


Q ss_pred             CC--cc---cccccCcchHHHHhhC----C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC----chHHHH
Q 020236          155 ND--GR---IISGQGTISLEFLEQV----P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA----NDAAQS  220 (329)
Q Consensus       155 ~n--~~---~~~g~~t~~~Ei~~ql----~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~----~~~~~~  220 (329)
                      .|  |+   ...|++|+++||++|+    + .||+||+|+|+||+++|++.++.. .|+++||+|||.++    ..+..+
T Consensus       187 ~~~~p~~~~~~~~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~iigVe~~gs~~~~~~~~~~  265 (385)
T TIGR00263       187 VGPHPFPTMVRDFQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLIGVEAGGLGIDTDKHAAT  265 (385)
T ss_pred             CCCCCchHHHHHHhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEEEEEeCCCcccchhhhhh
Confidence            43  23   2488999999999997    2 489999999999999999998855 69999999999986    334555


Q ss_pred             HHcCCee----------e-----cCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc
Q 020236          221 KAAGRII----------T-----LLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS  284 (329)
Q Consensus       221 ~~~g~~~----------~-----~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps  284 (329)
                      +..|.+.          .     .+...|++.|++.. +++..+.+.....++.+.|+|+|+++++++|+++|||+++|+
T Consensus       266 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~~p~~~~~~~~~~~~~v~Vsd~e~~~a~~~la~~egi~~~~s  345 (385)
T TIGR00263       266 LAKGSPGVLHGMKTYLLQDEDGQILEAHSVSAGLDYPGVGPEHAYLHETGRATYEAITDDEALEAFKLLSRNEGIIPALE  345 (385)
T ss_pred             hhcCCeeEecCcccccccCCCCcccccceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHhcCCeechH
Confidence            6666542          1     33456888888765 667777777778889999999999999999999999999999


Q ss_pred             hHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHh
Q 020236          285 GAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDS  326 (329)
Q Consensus       285 sa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~  326 (329)
                      ||+++++++++  +++  +.++++||+++|| |++|++.+.+.
T Consensus       346 saaalaa~~~~--~~~--l~~~~~Vv~i~~g~G~~d~~~~~~~  384 (385)
T TIGR00263       346 SSHALAHLEKI--APT--LPKDQIVVVNLSGRGDKDIFTIAKY  384 (385)
T ss_pred             HHHHHHHHHHH--HHh--CCCCCeEEEEeCCCCcCCHHHHHhh
Confidence            99999999986  333  4478999999999 99999998764

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.

>PLN02618 tryptophan synthase, beta chain

Probab=100.00  E-value=5.7e-55  Score=407.51  Aligned_cols=310  Identities=17%  Similarity=0.212  Sum_probs=249.0

Q ss_pred             CHHHHHHHHHHhccccC-CCCCccchhhhhhc------CCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEE-EE
Q 020236           11 NFSSIKEAQKRISLYIH-KTPVLSSETLNSMS------GRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVV-TH   82 (329)
Q Consensus        11 ~~~~~~~~~~~~~~~i~-~TPl~~~~~l~~~~------g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv-~~   82 (329)
                      +.+...+....+.+++| +|||+++++|++.+      |.+||+|+|++|||||||+|.+..++..+.+. +.+.+| ++
T Consensus        48 ~~~f~~~~~~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~-g~~~vIaes  126 (410)
T PLN02618         48 DPEFQEELAGILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRL-GKKRIIAET  126 (410)
T ss_pred             ChhhHHHHHHHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHc-CCCEEEEEc
Confidence            33444455556678886 99999999999877      48999999999999999999999988876544 455555 55


Q ss_pred             CCchHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEE---CCCHHHHH-HHHHHHHHH-cCCEee-CC
Q 020236           83 SSGNHAAALSLAAKLRGIPAYIVIPKNA---PKCKVENVVRYGGQVIWS---EATMHSRE-SVASKVLEE-TGAVLV-HP  153 (329)
Q Consensus        83 ssGN~g~a~A~~a~~~G~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~---~~~~~~~~-~~a~~~~~~-~~~~~~-~~  153 (329)
                      |+||||.|+|++|+.+|++|+||||+..   +..++.+|+.+||+|+.+   +++++++. +.+++++++ .+.+|+ ++
T Consensus       127 gaGNhG~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs  206 (410)
T PLN02618        127 GAGQHGVATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGS  206 (410)
T ss_pred             CcHHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecC
Confidence            6999999999999999999999999863   346677999999999999   56777776 455667765 444555 33


Q ss_pred             CC--Cc---ccccccCcchHHHHhhC-----CCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC----chHHH
Q 020236          154 YN--DG---RIISGQGTISLEFLEQV-----PLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA----NDAAQ  219 (329)
Q Consensus       154 ~~--n~---~~~~g~~t~~~Ei~~ql-----~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~----~~~~~  219 (329)
                      ..  +|   +..+++++++.||.+|+     +.||+||+|+|+||+++|++.+|+. .|+++||||||.++    +.+..
T Consensus       207 ~~gp~P~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~ligVEa~G~~~~~~~~~a  285 (410)
T PLN02618        207 VAGPHPYPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLIGVEAAGFGLDSGKHAA  285 (410)
T ss_pred             cCCCCCCHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEEEEEeCCCccccccccc
Confidence            22  23   24589999999998776     3699999999999999999999975 68999999999987    22334


Q ss_pred             HHHcCCee---------------ecCCCCccccccccC-CCcccHHHHhh-cCCcEEEeCHHHHHHHHHHHHHHcCceeC
Q 020236          220 SKAAGRII---------------TLLETNTVADGLRAF-LGDLTWPIVRD-LVDDVITVEDKEIIEAMKLCYEILKVAVE  282 (329)
Q Consensus       220 ~~~~g~~~---------------~~~~~~t~~~gl~~~-~~~~~~~~~~~-~~~~~~~V~d~e~~~a~~~l~~~egi~~~  282 (329)
                      ++..|++.               +....++++.||+.+ +++. +..+++ ..++.+.|+|+|+++++++|+++|||+++
T Consensus       286 ~l~~g~~gv~~g~~~~~l~~~~g~~~~~~sia~gl~~pgvgp~-~~~l~~~~~~~~v~VtD~Eal~a~~~La~~eGIi~~  364 (410)
T PLN02618        286 TLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPE-HSFLKDTGRAEYYSVTDEEALEAFQRLSRLEGIIPA  364 (410)
T ss_pred             chhcCCcceeccccccccccccCCCCCCcchhhhhcCCCCcHH-HHHHHhhcCcEEEEECHHHHHHHHHHHHHHcCceEc
Confidence            45555431               133567899999875 6666 455555 67899999999999999999999999999


Q ss_pred             cchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhh
Q 020236          283 PSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSF  327 (329)
Q Consensus       283 pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~  327 (329)
                      ++|++++++++++  +++  +.++++||+++|| |.+|++++.+.+
T Consensus       365 ~sSa~a~a~a~~~--a~~--l~~~~~iVv~lsgrG~Kd~~~v~~~~  406 (410)
T PLN02618        365 LETSHALAYLEKL--CPT--LPDGTKVVVNCSGRGDKDVNTAIKYL  406 (410)
T ss_pred             hhHHHHHHHHHHH--hHh--cCCCCEEEEEeCCCCcCCHHHHHHHh
Confidence            9999999999987  443  4578999999999 899999998865

>PRK13028 tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=1.3e-54  Score=405.18  Aligned_cols=303  Identities=19%  Similarity=0.210  Sum_probs=245.6

Q ss_pred             HhccccC-CCCCccchhhhhhc-CCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHc
Q 020236           21 RISLYIH-KTPVLSSETLNSMS-GRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLR   98 (329)
Q Consensus        21 ~~~~~i~-~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~   98 (329)
                      -+.++++ +|||+++++|++.+ +.+||+|+|++|||||||+|.+..++..+.+.+..+.|+++|+||||+|+|++|+.+
T Consensus        54 ~~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~~~vI~etgsGnhG~A~A~aaa~~  133 (402)
T PRK13028         54 LLKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGKKRLIAETGAGQHGVATATAAALF  133 (402)
T ss_pred             HHHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHc
Confidence            3346776 89999999999988 489999999999999999999999998875554444455689999999999999999


Q ss_pred             CCCEEEEEcCCCCH---HHHHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHH-cCCEeeC-CCC--Ccc---cccccC
Q 020236           99 GIPAYIVIPKNAPK---CKVENVVRYGGQVIWSEA---TMHSRESVASK-VLEE-TGAVLVH-PYN--DGR---IISGQG  164 (329)
Q Consensus        99 G~~~~i~~p~~~~~---~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~-~~~~~~~-~~~--n~~---~~~g~~  164 (329)
                      |++|+||||+..++   .++.+|+.+||+|+.++.   +++++.+.+.+ ++++ .+.+|+. ++.  +|+   ...|++
T Consensus       134 Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~~q~  213 (402)
T PRK13028        134 GLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRDFQS  213 (402)
T ss_pred             CCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHHHhH
Confidence            99999999986443   567899999999999974   67788777644 5555 4566663 322  233   246899


Q ss_pred             cchHHHHhhC----C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCC----CchHHHHHHcCCeee-------
Q 020236          165 TISLEFLEQV----P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG----ANDAAQSKAAGRIIT-------  228 (329)
Q Consensus       165 t~~~Ei~~ql----~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~----~~~~~~~~~~g~~~~-------  228 (329)
                      +++.||.+|+    + .||+||+|+|+||+++|++.+|++ .|+++||||||.+    ++.+..++..|++..       
T Consensus       214 tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~aa~l~~g~~g~~~g~~~~  292 (402)
T PRK13028        214 VIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLVGVEPAGRGLDLGEHAATLTLGKPGVIHGFKSY  292 (402)
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEEEEecCCCCcccccccccccCCCcceeccccee
Confidence            9999999886    2 599999999999999999999986 4899999999988    222222344444311       


Q ss_pred             --------cCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcccccc
Q 020236          229 --------LLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK  299 (329)
Q Consensus       229 --------~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~  299 (329)
                              ....++++.|++.+ +++.++.+.....++.+.|+|+|+++++++|+++|||+++++||+++|+++++  ++
T Consensus       293 ~l~~~~g~~~~~~sia~gl~~~~vgp~~~~l~~~~~~~~v~VtD~eal~a~~~La~~eGIi~~~~sa~alA~a~~~--a~  370 (402)
T PRK13028        293 VLQDEDGEPAPVHSIAAGLDYPGVGPEHAYLKDIGRVEYVTATDEEALDAFFLLSRTEGIIPALESSHAVAYAIKL--AP  370 (402)
T ss_pred             eccccCCCcCCccceeccccCCCCCHHHHHHHHhcCcEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHh--hh
Confidence                    12357899999864 77777777777778999999999999999999999999999999999999987  43


Q ss_pred             CCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          300 NPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       300 ~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      +  +.++++||+++|| |++|++++.++++
T Consensus       371 ~--l~~~~~VVv~lsG~G~kd~~~~~~~~~  398 (402)
T PRK13028        371 E--LSKDETILVNLSGRGDKDIDYVAEMLG  398 (402)
T ss_pred             h--cCCCCeEEEEECCCCccCHHHHHHHhC
Confidence            3  4578999999999 8999999988764

>PRK04346 tryptophan synthase subunit beta; Validated

Probab=100.00  E-value=2e-54  Score=403.26  Aligned_cols=302  Identities=20%  Similarity=0.237  Sum_probs=245.0

Q ss_pred             hccccC-CCCCccchhhhhhc-CCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236           22 ISLYIH-KTPVLSSETLNSMS-GRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG   99 (329)
Q Consensus        22 ~~~~i~-~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G   99 (329)
                      +.+++| +|||+++++|++.+ |.+||+|+|++|||||||+|.+..++..+.+.++.+.|+++|+||||.|+|++|+++|
T Consensus        51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk~~vIaetgaGnhG~A~A~~aa~~G  130 (397)
T PRK04346         51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGKKRIIAETGAGQHGVATATAAALLG  130 (397)
T ss_pred             HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCCCeEEEecCcHHHHHHHHHHHHHcC
Confidence            346777 69999999999988 5899999999999999999999999988755554445565899999999999999999


Q ss_pred             CCEEEEEcCCC-C--HHHHHHHHHcCCEEEEECC---CHHHHHHHH-HHHHHH-cCCEee-CCCC--Ccc---cccccCc
Q 020236          100 IPAYIVIPKNA-P--KCKVENVVRYGGQVIWSEA---TMHSRESVA-SKVLEE-TGAVLV-HPYN--DGR---IISGQGT  165 (329)
Q Consensus       100 ~~~~i~~p~~~-~--~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a-~~~~~~-~~~~~~-~~~~--n~~---~~~g~~t  165 (329)
                      ++|+||||+.. +  ..++.+|+.+||+|+.++.   +++++.+.+ +.+.++ .+.+|+ .++.  +|+   ..+||++
T Consensus       131 l~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~~q~t  210 (397)
T PRK04346        131 LECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRDFQSV  210 (397)
T ss_pred             CcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHHhcch
Confidence            99999999863 3  3577889999999999985   566554444 445655 354554 3333  233   2469999


Q ss_pred             chHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCc----hHHHHHHcCCee---------
Q 020236          166 ISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGAN----DAAQSKAAGRII---------  227 (329)
Q Consensus       166 ~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~----~~~~~~~~g~~~---------  227 (329)
                      ++.||++|+.     .||+||+|+|+||+++|++.+|+. .|.+|||||||.++.    ....++..|++.         
T Consensus       211 ig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~iigVE~~G~~~~~~~~~a~l~~g~~g~~~g~~~~~  289 (397)
T PRK04346        211 IGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGLETGKHAATLTKGRPGVLHGAKTYL  289 (397)
T ss_pred             HHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEEEEecCCCccccccccchhhcCCeeeecccccee
Confidence            9999999974     599999999999999999999975 789999999999862    234455555542         


Q ss_pred             ------ecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccC
Q 020236          228 ------TLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN  300 (329)
Q Consensus       228 ------~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~  300 (329)
                            .....++++.|++.+ +++..+.+.....++.+.|+|+|+++++++|+++|||+++++||.|+++++++  ++.
T Consensus       290 ~~~~~g~~~~~~sis~gL~~pgvgp~~~~l~~~~~~~~v~VtD~eal~a~~~L~~~eGIi~~~esa~AlA~a~kl--a~~  367 (397)
T PRK04346        290 LQDEDGQILETHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDDEALEAFQLLSRLEGIIPALESSHALAYALKL--APT  367 (397)
T ss_pred             cccCCCccCCCceeeccccCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCEeccHHHHHHHHHHHh--hhh
Confidence                  233468899999875 77777766667778999999999999999999999999999999999999886  433


Q ss_pred             CCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          301 PAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       301 ~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                        +.++++||+++|| |++|++++.+.+.
T Consensus       368 --l~~~~~Vvv~lsGrG~kd~~~~~~~~~  394 (397)
T PRK04346        368 --LGKDQIIVVNLSGRGDKDVFTVAKLLG  394 (397)
T ss_pred             --cCCCCeEEEEeCCCCccCHHHHHHHhc
Confidence              4578999999999 8999999998763

>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions

Probab=100.00  E-value=3.8e-54  Score=402.10  Aligned_cols=307  Identities=20%  Similarity=0.216  Sum_probs=242.7

Q ss_pred             CHHHHHHHHHHhccccC-CCCCccchhhhhhc-CCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEE-ECCchH
Q 020236           11 NFSSIKEAQKRISLYIH-KTPVLSSETLNSMS-GRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT-HSSGNH   87 (329)
Q Consensus        11 ~~~~~~~~~~~~~~~i~-~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~-~ssGN~   87 (329)
                      +++.....+....++++ +|||+++++|++.+ +.+||+|+|++|||||||||.+..++..+.++ +...+++ +|+|||
T Consensus        16 ~~~~~~~~~~~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~-g~~~vv~~~ssGN~   94 (365)
T cd06446          16 DPDFPEELRELYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRM-GKKRVIAETGAGQH   94 (365)
T ss_pred             CcccHHHHHHHhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHc-CCCeEEEecCchHH
Confidence            33444444444555554 99999999999888 48999999999999999999999999877554 4556666 699999


Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCC---HHHHHHHHHcCCEEEEECCC---HHHHHHHHHH-HHHHc-C-CEeeCCCC--C
Q 020236           88 AAALSLAAKLRGIPAYIVIPKNAP---KCKVENVVRYGGQVIWSEAT---MHSRESVASK-VLEET-G-AVLVHPYN--D  156 (329)
Q Consensus        88 g~a~A~~a~~~G~~~~i~~p~~~~---~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~-~~~~~-~-~~~~~~~~--n  156 (329)
                      |+|+|++|+.+|++|+||+|+..+   +.++.+++.+||+|+.++..   ++++...+.+ ..++. + +|+++++.  +
T Consensus        95 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~  174 (365)
T cd06446          95 GVATATACALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPH  174 (365)
T ss_pred             HHHHHHHHHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCC
Confidence            999999999999999999998643   36788999999999999853   4555543433 34432 4 44444432  2


Q ss_pred             c---ccccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHH----HHHcC
Q 020236          157 G---RIISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQ----SKAAG  224 (329)
Q Consensus       157 ~---~~~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~----~~~~g  224 (329)
                      |   +..+|++|+++||++|++     .||+||+|+|+||+++|++.+++. .+.++||+|||.+++++..    ++..+
T Consensus       175 ~~~~~~~ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vigVep~gs~~~~~~~~~~~~~g  253 (365)
T cd06446         175 PYPNMVRDFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLIGVEAGGCGLETGGHAAYLFGG  253 (365)
T ss_pred             CchHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEEEEcCCCCccccccceeeccCC
Confidence            2   357899999999999986     599999999999999999998877 4689999999999887752    33333


Q ss_pred             Cee---------------ecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHH
Q 020236          225 RII---------------TLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIG  288 (329)
Q Consensus       225 ~~~---------------~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~a  288 (329)
                      ...               ......|+++|+... +++..+.+..+++|+++.|+|+|++++++++++++|+++||+||++
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~d~~v~V~d~e~~~a~r~la~~eGi~~epssgaa  333 (365)
T cd06446         254 TAGVLHGLKMYTLQDEDGQIVPPHSISAGLDYPGVGPEHAYLKDSGRVEYVAVTDEEALEAFKLLARTEGIIPALESSHA  333 (365)
T ss_pred             CcceecchhhhccccccCCCCCcccccccccCCCCCHHHHHHHHhCCceEEEeChHHHHHHHHHHHHhcCceeCccchHH
Confidence            321               123456788888753 5566666777889999999999999999999999999999999999


Q ss_pred             HHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHH
Q 020236          289 LAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVL  323 (329)
Q Consensus       289 laa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~  323 (329)
                      +++++++  .+++  .++++||+|+|| |++|++++
T Consensus       334 lAa~~~~--~~~~--~~~~~Vv~i~~g~G~k~~~~~  365 (365)
T cd06446         334 IAYAIKL--AKKL--GKEKVIVVNLSGRGDKDLQTV  365 (365)
T ss_pred             HHHHHHH--HHhc--CCCCeEEEEeCCCCccccccC
Confidence            9999987  4443  367899999999 99998763

In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.

>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions

Probab=100.00  E-value=1.1e-53  Score=379.60  Aligned_cols=239  Identities=35%  Similarity=0.560  Sum_probs=224.9

Q ss_pred             CCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc--CCeEEEECCchHHHHHHHHHHHcCCCEEEEE
Q 020236           29 TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA--IKGVVTHSSGNHAAALSLAAKLRGIPAYIVI  106 (329)
Q Consensus        29 TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~--~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~  106 (329)
                      |||+++++|++..+.+||+|+|++|||||||||++.+++..+.+++.  ...|+++|+||||.|+|++|+.+|++|++|+
T Consensus         1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~~~~~vv~~ssGN~g~alA~~a~~~g~~~~v~~   80 (244)
T cd00640           1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKLPKGVIIESTGGNTGIALAAAAARLGLKCTIVM   80 (244)
T ss_pred             CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCCCCCEEEEeCCcHHHHHHHHHHHHcCCCEEEEE
Confidence            89999999988777999999999999999999999999998866543  6789999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHH-cCCEeeCCCCCcccccccCcchHHHHhhCCC--CCEEEEe
Q 020236          107 PKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEE-TGAVLVHPYNDGRIISGQGTISLEFLEQVPL--LDTIIVP  183 (329)
Q Consensus       107 p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~--~d~vv~~  183 (329)
                      |++.++.++++|+.+|++|+.++++++++.+.+++++++ .+++|++||+|+.+++|+.++++||++|++.  ||+||+|
T Consensus        81 p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~~~~g~~~~~~Ei~~q~~~~~~d~ivvp  160 (244)
T cd00640          81 PEGASPEKVAQMRALGAEVVLVPGDFDDAIALAKELAEEDPGAYYVNQFDNPANIAGQGTIGLEILEQLGGQKPDAVVVP  160 (244)
T ss_pred             CCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCCEecCCCCCHHHHHHHHHHHHHHHHHcCCCCCCEEEEe
Confidence            999999999999999999999999999999999999998 7999999999999999999999999999996  9999999


Q ss_pred             CCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCCcEEEeCH
Q 020236          184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVED  263 (329)
Q Consensus       184 ~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~V~d  263 (329)
                      +|+||+++|++.+|++.+|.++||+|++                                             .++.|+|
T Consensus       161 ~GtGg~~~G~~~~~~~~~~~~~ii~v~~---------------------------------------------~~~~v~d  195 (244)
T cd00640         161 VGGGGNIAGIARALKELLPNVKVIGVEP---------------------------------------------EVVTVSD  195 (244)
T ss_pred             cCccHHHHHHHHHHHHhCCCCEEEEEee---------------------------------------------eEEEECH
Confidence            9999999999999999999999999997                                             6889999


Q ss_pred             HHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCC
Q 020236          264 KEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG  316 (329)
Q Consensus       264 ~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg  316 (329)
                      +|++++++++++++|+++||+||++++++.++  .+++  .++++||+++|||
T Consensus       196 ~~~~~a~~~l~~~~gi~~~pssa~~~aa~~~~--~~~~--~~~~~vv~v~tg~  244 (244)
T cd00640         196 EEALEAIRLLAREEGILVEPSSAAALAAALKL--AKKL--GKGKTVVVILTGG  244 (244)
T ss_pred             HHHHHHHHHHHHHcCceECHhHHHHHHHHHHH--HHhc--CCCCEEEEEeCCC
Confidence            99999999999999999999999999999987  4443  3678999999986

This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy

>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=100.00  E-value=1.2e-54  Score=398.27  Aligned_cols=288  Identities=33%  Similarity=0.483  Sum_probs=243.1

Q ss_pred             hccccCCCCCccch--hhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236           22 ISLYIHKTPVLSSE--TLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG   99 (329)
Q Consensus        22 ~~~~i~~TPl~~~~--~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G   99 (329)
                      |.+.+++|||++++  .++...+.+||+|+|++|||||||||++.+++.++.++ +.++|+++|+||||.|+|++|+.+|
T Consensus         1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~-~~~~vv~assGN~g~a~A~~a~~~g   79 (306)
T PF00291_consen    1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEK-GGRTVVGASSGNHGRALAYAAARLG   79 (306)
T ss_dssp             GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHT-TTSEEEEESSSHHHHHHHHHHHHHT
T ss_pred             CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccc-ccceeeeeccCCceehhhhhhhhcc
Confidence            45789999999976  45556679999999999999999999999999997544 6788999999999999999999999


Q ss_pred             CCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-------CCEeeCCCCCcccccccCcchHHHHh
Q 020236          100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-------GAVLVHPYNDGRIISGQGTISLEFLE  172 (329)
Q Consensus       100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-------~~~~~~~~~n~~~~~g~~t~~~Ei~~  172 (329)
                      ++|++|+|++.++.++++++.+||+|+.++.++++..+.+.+++++.       ... ++|++|+....|+.++++||++
T Consensus        80 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~Ei~~  158 (306)
T PF00291_consen   80 LKCTIVVPEDVSPEKLKQMRALGAEVILVPGDVEGAFDDAQELAKERAELLSPFNGE-LNQYNNPNVIAGYATIGLEIYE  158 (306)
T ss_dssp             CEEEEEEETTSHHHHHHHHHHTTCEEEEESSTHHHHHHHHHHHHHHHHHHHHHSTTE-ESTTTSHHHHHHHHHHHHHHHH
T ss_pred             ccceeeeccccccccccceeeecceEEEccccccccccccccccccccccccccccc-cCcccchhhhhhhhhcchhccc
Confidence            99999999999999999999999999999987665555555544321       122 6777788899999999999999


Q ss_pred             hCCCCC--EEEEeCCCChHHHHHHHHHHH--hCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC---CCc
Q 020236          173 QVPLLD--TIIVPISGGGLISGVALAAKS--IKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF---LGD  245 (329)
Q Consensus       173 ql~~~d--~vv~~~GtGg~~~Gi~~~~k~--~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~---~~~  245 (329)
                      |++.||  +||+|+||||+++|++.+++.  . |++++|+|++.+++++++++..|.....+...++. |+..+   .+.
T Consensus       159 q~~~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vigv~~~~~~~~~~~~~~g~~~~~~~~~~~~-gl~~~~~~~~~  236 (306)
T PF00291_consen  159 QLGKPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVIGVEPEGSDPLYRSFKAGKPIRLPGESTIA-GLGVPMPFPGE  236 (306)
T ss_dssp             HHTTESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEEEEEETTGHHHHHHHHHTSCEHSSCHHSST-GGTSSSCTTTT
T ss_pred             ccccccceEEEecCCchhHHHHHHhhhhhhhc-ccccceeeeccCCccccccccccccccccceeeee-cccCCccchhh
Confidence            997555  499999999999999999999  7 89999999999999999999999876544333444 77754   345


Q ss_pred             ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCC--CCCCeEEEEeCC
Q 020236          246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAW--QDSKKIGIVLSG  315 (329)
Q Consensus       246 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~--~~~~~vv~v~tg  315 (329)
                      ..+++++++.+.++.|+|+|++++++++++++|+++||++|++++++++.  .+++.+  +++++||+|+||
T Consensus       237 ~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~~p~~a~a~aa~~~~--~~~~~~~~~~~~~vv~v~tG  306 (306)
T PF00291_consen  237 LDLELIDEYVGDVVGVSDEEALEAIRELAEREGILVEPSSAAALAAALKL--AERGSLAPPAGKRVVVVLTG  306 (306)
T ss_dssp             HHHHHHHHETEEEEEEEHHHHHHHHHHHHHHHSB-B-HHHHHHHHHHHHH--HHHTGCHTTTTSEEEEEE-B
T ss_pred             hhhhhhhhccccccccchHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHH--HHhCCccccCCCeEEEEcCC
Confidence            67888999999999999999999999999999999999999999999987  444433  478999999997

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....

>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme

Probab=100.00  E-value=1.7e-53  Score=401.04  Aligned_cols=302  Identities=23%  Similarity=0.251  Sum_probs=238.5

Q ss_pred             cccc-CCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEE-ECCchHHHHHHHHHHHc
Q 020236           23 SLYI-HKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT-HSSGNHAAALSLAAKLR   98 (329)
Q Consensus        23 ~~~i-~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~-~ssGN~g~a~A~~a~~~   98 (329)
                      ...+ ++|||+++++|++.+|  .+||+|+|++|||||||||++.+++.++.++ +.+++++ +|+||||.|+|++|+.+
T Consensus        62 ~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~-G~~~~vtetssGN~G~alA~aaa~~  140 (419)
T TIGR01415        62 YAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIE-GAKRLVTETGAGQWGSALSLAGALF  140 (419)
T ss_pred             HHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHc-CCCeEEEecCchHHHHHHHHHHHHc
Confidence            3445 4899999999998887  6999999999999999999999999988655 4556665 68999999999999999


Q ss_pred             CCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECCCHHHH------------------HHHHHHHHHH-c-CCEeeCCCC
Q 020236           99 GIPAYIVIPKNA---PKCKVENVVRYGGQVIWSEATMHSR------------------ESVASKVLEE-T-GAVLVHPYN  155 (329)
Q Consensus        99 G~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~------------------~~~a~~~~~~-~-~~~~~~~~~  155 (329)
                      |++|+||||+..   ++.|+.+|+.+||+|+.++++++++                  ...+.+.+++ . ..|+++++.
T Consensus       141 Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y~~~~~~  220 (419)
T TIGR01415       141 GLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEFTEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKYSLGSVL  220 (419)
T ss_pred             CCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCchhhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence            999999999853   5688999999999999999876543                  3345555554 3 346666665


Q ss_pred             CcccccccCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHh----CCCCEEEEEecCCCchHHHHHHc----
Q 020236          156 DGRIISGQGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSI----KPAIRILAAEPIGANDAAQSKAA----  223 (329)
Q Consensus       156 n~~~~~g~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~----~~~~~vi~v~~~~~~~~~~~~~~----  223 (329)
                      | ....|+.++++||++|++    .||+||+|+|+||+++|++.+|+..    .+++|+|+|||.+|+++.++...    
T Consensus       221 n-~~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rviaVep~~~~~l~~g~~~yd~~  299 (419)
T TIGR01415       221 N-HVLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFIAAEPKACPTLTRGEYRYDFG  299 (419)
T ss_pred             c-HHHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEEEEeeCCChhhhcCccccccc
Confidence            5 456799999999999997    4999999999999999999988432    25899999999999988765421    


Q ss_pred             --CCeeecC----------CCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHH
Q 020236          224 --GRIITLL----------ETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLA  290 (329)
Q Consensus       224 --g~~~~~~----------~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~ala  290 (329)
                        +..++..          .+.+++.|+... .++....+.++.+.+.+.|+|+|+++++++|+++|||+++|+||++++
T Consensus       300 ~~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~~~~~~~~~l~~~~~~~~~~V~d~e~~~a~r~la~~eGi~~epssa~ala  379 (419)
T TIGR01415       300 DTAGLTPLLKMYTLGHDFIPPPIHAGGLRYHGVAPTLSLLVNLGIVEARAYDQEEAFEAAVIFAKTEGIVPAPESAHAIA  379 (419)
T ss_pred             ccccCCcceeeeecCCCCCCcceeccccccCCccHHHHHHhhcCceEEEEECHHHHHHHHHHHHHhcCCccccHHHHHHH
Confidence              1111111          234566666653 333333344555567899999999999999999999999999999999


Q ss_pred             HHhccccccCCCC-CCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          291 AVLSDGFRKNPAW-QDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       291 a~~~~~~~~~~~~-~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      |+++.  +++..+ +++++||+++|| |++|++.|.+.+.
T Consensus       380 aai~~--a~~~~~~~~~~vvv~~lsG~G~~d~~~y~~~~~  417 (419)
T TIGR01415       380 AAIDE--ARKCRETGEEKVILFNLSGHGLLDLKAYAKYLH  417 (419)
T ss_pred             HHHHH--HHhcCcCCCCeEEEEEcCCCCcCCHHHHHHHhc
Confidence            99987  444332 234578899999 9999999998764

This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.

>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-54  Score=379.92  Aligned_cols=294  Identities=21%  Similarity=0.243  Sum_probs=246.6

Q ss_pred             HHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHH
Q 020236           18 AQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSL   93 (329)
Q Consensus        18 ~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~   93 (329)
                      ......+.+|+|||+.++++...+.++||+|+|++||+||.|||.++.|+.+|+++|.    ..+++++||||+|+++|+
T Consensus        42 ~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGigLA~  121 (362)
T KOG1252|consen   42 ILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGIGLAY  121 (362)
T ss_pred             hhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHHHHHH
Confidence            4455667899999999999877777999999999999999999999999999987763    477999999999999999


Q ss_pred             HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC-----HHHHHHHHHHHHHH-cCCEeeCCCCCcc-cccccCcc
Q 020236           94 AAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT-----MHSRESVASKVLEE-TGAVLVHPYNDGR-IISGQGTI  166 (329)
Q Consensus        94 ~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~~n~~-~~~g~~t~  166 (329)
                      +|+..|++|+++||+.++.+|+..|+.+||+|+.+|..     .+.+...+.++..+ ++.+.++||.||. ...||.++
T Consensus       122 ~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~hy~tt  201 (362)
T KOG1252|consen  122 MAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAHYETT  201 (362)
T ss_pred             HHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccccccc
Confidence            99999999999999999999999999999999999862     24477788888777 7899999999987 56899999


Q ss_pred             hHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCc
Q 020236          167 SLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD  245 (329)
Q Consensus       167 ~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~  245 (329)
                      ++|||.|+. ++|.||.++|||||++|+++++|+++|+++|++|+|..+. +    .++..... ..+. .+|++.+..+
T Consensus       202 g~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp~~S~-~----~~~~~~g~-~~~~-I~GIGyg~~p  274 (362)
T KOG1252|consen  202 GPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDPQESI-V----LSGGKPGP-TFHK-IQGIGYGFIP  274 (362)
T ss_pred             cHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCCCcce-e----ccCCCCCC-Cccc-eeccccCcCc
Confidence            999999997 7999999999999999999999999999999999999986 2    22221110 1122 2455544333


Q ss_pred             ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEE-eCCCCCChHHH
Q 020236          246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIV-LSGGNVDLGVL  323 (329)
Q Consensus       246 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v-~tgg~~~~~~~  323 (329)
                      .+  ++...+|..+.+.++|++.+.|+++.+||+++++|||++++++++.  +++.. +.++-||++ -++|.+|++++
T Consensus       275 ~~--ld~~~vd~~~~~~~d~A~~~Ar~La~eeGll~G~SSGan~~aAl~~--a~~~e-n~~kliV~~~pd~ge~Y~st~  348 (362)
T KOG1252|consen  275 TT--LDTKLVDEVLKVSSDEAIEMARRLALEEGLLVGISSGANVAAALKL--AKRPE-NAGKLIVVTFPDFGERYLSTF  348 (362)
T ss_pred             cc--cchHHHHHHHHhCCHHHHHHHHHHHHhhCeeecccchHHHHHHHHH--Hhccc-cCCcEEEEECCCcchhhhhhh
Confidence            32  2356788999999999999999999999999999999999999987  55433 456666666 34589999875

>PRK12391 tryptophan synthase subunit beta; Reviewed

Probab=100.00  E-value=1e-52  Score=396.20  Aligned_cols=307  Identities=21%  Similarity=0.261  Sum_probs=239.3

Q ss_pred             HHHhccccCCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEE-ECCchHHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVT-HSSGNHAAALSLAA   95 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~-~ssGN~g~a~A~~a   95 (329)
                      ...++..+++|||+++++|++.+|  .+||+|+|++||+||||||++..++.++.++ +...+++ .|+||||.|+|++|
T Consensus        68 v~~~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~-G~~~~vtetgsGN~G~alA~aa  146 (427)
T PRK12391         68 VREIYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKE-GIKRLTTETGAGQWGSALALAC  146 (427)
T ss_pred             HHHHHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHC-CCCEEEEccCchHHHHHHHHHH
Confidence            333446678999999999998887  6999999999999999999999999887555 4556665 57999999999999


Q ss_pred             HHcCCCEEEEEcCC---CCHHHHHHHHHcCCEEEEECCCHHH------------------HHHHHHHHHHH-cCCEeeCC
Q 020236           96 KLRGIPAYIVIPKN---APKCKVENVVRYGGQVIWSEATMHS------------------RESVASKVLEE-TGAVLVHP  153 (329)
Q Consensus        96 ~~~G~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~~------------------~~~~a~~~~~~-~~~~~~~~  153 (329)
                      +.+|++|+||||+.   .++.|+.+|+.+||+|+.+++++++                  +...+.+++.+ .+.+|..+
T Consensus       147 a~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~~  226 (427)
T PRK12391        147 ALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYALG  226 (427)
T ss_pred             HHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEcC
Confidence            99999999999974   4668899999999999999876433                  34455556555 35456544


Q ss_pred             CCCcccccccCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHH---hC-CCCEEEEEecCCCchHHHHHH---
Q 020236          154 YNDGRIISGQGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKS---IK-PAIRILAAEPIGANDAAQSKA---  222 (329)
Q Consensus       154 ~~n~~~~~g~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~---~~-~~~~vi~v~~~~~~~~~~~~~---  222 (329)
                      +++.....|+.++++||++|++    .||+||+|+|+||+++|++.+|..   .+ +.+|||+|||.+|+++++++.   
T Consensus       227 s~~~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~riiaVEp~~~~~l~~g~~~~~  306 (427)
T PRK12391        227 SVLNHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFIAVEPAACPTLTKGEYAYD  306 (427)
T ss_pred             CCCcHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEEEEeeccchhhcccccccc
Confidence            4444577899999999999996    599999999999999999997733   34 889999999999999876543   


Q ss_pred             cCC---eeecC----------CCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHH
Q 020236          223 AGR---IITLL----------ETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIG  288 (329)
Q Consensus       223 ~g~---~~~~~----------~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~a  288 (329)
                      .|+   .++..          .+.+.+.|+... ..+....+.+....+.+.|+|+|+++++++|+++|||+++|+||++
T Consensus       307 ~gd~~~~~p~~~~~~lG~~~~p~~~~a~gl~~~g~~~~~~~l~~~~~~~~~~V~d~e~~~a~~~~a~~eGi~~~pss~~a  386 (427)
T PRK12391        307 FGDTAGLTPLLKMYTLGHDFVPPPIHAGGLRYHGMAPLVSLLVHEGLIEARAYPQTEVFEAAVLFARTEGIVPAPESSHA  386 (427)
T ss_pred             ccccccCCccceeEecCCCCCCccccccccccCCchHHHHHHHhcCceEEEEECHHHHHHHHHHHHHHcCCeechHHHHH
Confidence            221   11111          112233344321 2223333445555688999999999999999999999999999999


Q ss_pred             HHHHhccccccCCC-CCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          289 LAAVLSDGFRKNPA-WQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       289 laa~~~~~~~~~~~-~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      +++++++  +++.. .+++++||+++|| |++|++.+.+.++
T Consensus       387 laaa~~~--a~~~~~~~~~~~iv~~lsG~G~~d~~~y~~~l~  426 (427)
T PRK12391        387 IAAAIDE--ALKAKEEGEEKVILFNLSGHGLLDLAAYDAYLA  426 (427)
T ss_pred             HHHHHHH--HHhccccCCCCEEEEEeCCCCCCCHHHHHHHhc
Confidence            9999987  33322 2357899999999 9999999988764

>PRK03910 D-cysteine desulfhydrase; Validated

Probab=100.00  E-value=9.6e-54  Score=395.28  Aligned_cols=298  Identities=18%  Similarity=0.204  Sum_probs=244.8

Q ss_pred             HhccccCCCCCccchhhhhhcCCeEEEEecCCCCC--CccchhhHHHHHhcCchhccCCeEEEEC--CchHHHHHHHHHH
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKG--GAFKFRGASNAVLSLDEDQAIKGVVTHS--SGNHAAALSLAAK   96 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~npt--GS~KdR~a~~~l~~a~~~~~~~~vv~~s--sGN~g~a~A~~a~   96 (329)
                      ++...+++|||++++.|++..|.+||+|+|++||+  ||||||++.+++..+.++ +.++||++|  +||||.|+|++|+
T Consensus         8 ~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~-g~~~vvt~g~s~gN~g~alA~~a~   86 (331)
T PRK03910          8 RLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQ-GADTLITAGAIQSNHARQTAAAAA   86 (331)
T ss_pred             CccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHc-CCCEEEEcCcchhHHHHHHHHHHH
Confidence            45678899999999999988899999999999997  699999999999987544 567788764  5899999999999


Q ss_pred             HcCCCEEEEEcCCCCH--------HHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHHcC--CEeeCCCCCccccccc
Q 020236           97 LRGIPAYIVIPKNAPK--------CKVENVVRYGGQVIWSEAT---MHSRESVASKVLEETG--AVLVHPYNDGRIISGQ  163 (329)
Q Consensus        97 ~~G~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~~~--~~~~~~~~n~~~~~g~  163 (329)
                      .+|++|++|||+..++        .++..++.+||+|+.++.+   .+.+.+.++++.++.+  +++.+++.|+....|+
T Consensus        87 ~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~g~  166 (331)
T PRK03910         87 KLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNALGALGY  166 (331)
T ss_pred             HhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCchhHHHH
Confidence            9999999999998775        4568999999999999875   2234455666666543  3345677889888999


Q ss_pred             CcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCcccccc
Q 020236          164 GTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGL  239 (329)
Q Consensus       164 ~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl  239 (329)
                      .+++.||++|++    +||+||+|+|||||++|++.+|++.+|++++|||||.+++.+..+..      .....++++++
T Consensus       167 ~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~~------~~~~~~~a~~~  240 (331)
T PRK03910        167 VACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTVSRSAAEQEPKV------AKLAQATAELL  240 (331)
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHH------HHHHHHHHHHc
Confidence            999999999997    69999999999999999999999999999999999999876543311      11123444555


Q ss_pred             ccC--CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeEEEEeCCC
Q 020236          240 RAF--LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG  316 (329)
Q Consensus       240 ~~~--~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg  316 (329)
                      +.+  .++..+.+.+++.|+.+.|+|+|++++++++++++||++||+ ||+++++++++  .+++.+.++++||+|||||
T Consensus       241 g~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~~~~~l~~~~gi~~ep~ysg~~~aa~~~~--~~~~~~~~~~~Vv~i~tGG  318 (331)
T PRK03910        241 GLPTEIPRADIRLWDDYVGPGYGVPTDEMLEAVKLLARTEGILLDPVYTGKAMAGLIDL--IRQGRFKKGGNVLFIHTGG  318 (331)
T ss_pred             CCCccCCcccEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCccccccHHHHHHHHHHH--HHcCCCCCCCeEEEEECCC
Confidence            432  344555667889999999999999999999999999999996 99999999987  5555555678999999999


Q ss_pred             CCChHHHHHhh
Q 020236          317 NVDLGVLWDSF  327 (329)
Q Consensus       317 ~~~~~~~~~~~  327 (329)
                      +.++--+.+.+
T Consensus       319 ~~~~~~~~~~~  329 (331)
T PRK03910        319 APALFAYADAF  329 (331)
T ss_pred             hHhhhhhhhhh
Confidence            98877776544

>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=6.9e-52  Score=407.59  Aligned_cols=306  Identities=21%  Similarity=0.278  Sum_probs=246.5

Q ss_pred             HHHHhccccC-CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHH
Q 020236           18 AQKRISLYIH-KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAK   96 (329)
Q Consensus        18 ~~~~~~~~i~-~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~   96 (329)
                      ...-+..+++ +|||+++++|++.+|.+||+|+|++|||||||+|.+..++..+.+.+..+.|+++|+||||+|+|++|+
T Consensus       260 ~~~~~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~~~vi~e~gsGnhG~A~A~~aa  339 (610)
T PRK13803        260 FKRLLQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATACA  339 (610)
T ss_pred             HHHHHHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCCCEEEEecChHHHHHHHHHHHH
Confidence            3333345666 899999999999889999999999999999999999999887755433334556899999999999999


Q ss_pred             HcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHH-HHHHHHHH-cCCEeeCCC-C--Ccc--c-ccc
Q 020236           97 LRGIPAYIVIPKNA---PKCKVENVVRYGGQVIWSEA---TMHSRES-VASKVLEE-TGAVLVHPY-N--DGR--I-ISG  162 (329)
Q Consensus        97 ~~G~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~---~~~~~~~-~a~~~~~~-~~~~~~~~~-~--n~~--~-~~g  162 (329)
                      .+|++|+||||+..   +..++.+|+.+||+|+.++.   ++.++.+ ..+++..+ .+.+|++++ .  +|+  . ..|
T Consensus       340 ~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~  419 (610)
T PRK13803        340 LFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYF  419 (610)
T ss_pred             HcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHH
Confidence            99999999999874   35678899999999999984   4555543 34444333 456666543 2  333  2 358


Q ss_pred             cCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCc----hHHHHHHcCCeee-----
Q 020236          163 QGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGAN----DAAQSKAAGRIIT-----  228 (329)
Q Consensus       163 ~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~----~~~~~~~~g~~~~-----  228 (329)
                      +++++.||++|++     .||+||+|+||||+++|++.+|++ .|++++|||||.++.    ....++..|.+..     
T Consensus       420 ~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~iigVE~~g~~~~~~~~~a~l~~g~~g~~~g~~  498 (610)
T PRK13803        420 QSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLIGVEAGGKGVNTGEHAATIKKGRKGVLHGSM  498 (610)
T ss_pred             hhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEEEEecCCCCcccccccchhhcCCeeeeccce
Confidence            9999999999985     599999999999999999999964 789999999999862    2344566665421     


Q ss_pred             ----------cCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcccc
Q 020236          229 ----------LLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGF  297 (329)
Q Consensus       229 ----------~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~  297 (329)
                                ....++++.|++.+ +++..+.+.....++.+.|+|+|+++++++|++.|||+++++||+++|+++++  
T Consensus       499 ~~~~~~~~g~~~~~~sia~gl~~~gvg~~~~~~~~~~~~~~v~Vtd~ea~~a~~~La~~eGi~~~~ssa~alA~~~~~--  576 (610)
T PRK13803        499 TYLMQDENGQILEPHSISAGLDYPGIGPMHANLFETGRAIYTSVTDEEALDAFKLLAKLEGIIPALESSHALAYLKEG--  576 (610)
T ss_pred             eeeecccCCcccCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHHh--
Confidence                      23467899999875 77777777676777899999999999999999999999999999999999986  


Q ss_pred             ccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          298 RKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       298 ~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      +..  +.++++||+++|| |++|.+++.+.+.
T Consensus       577 ~~~--~~~~~~Vvv~lsG~G~kd~~~~~~~~~  606 (610)
T PRK13803        577 RKK--FKKKDIVIVNLSGRGDKDIPTLKEYFE  606 (610)
T ss_pred             chh--cCCCCeEEEEeCCCCcCCHHHHHHHHh
Confidence            332  4468899999999 9999999988765

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=100.00  E-value=1.5e-51  Score=404.10  Aligned_cols=302  Identities=18%  Similarity=0.180  Sum_probs=241.2

Q ss_pred             HhccccC-CCCCccchhhhhh----cC--CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHH
Q 020236           21 RISLYIH-KTPVLSSETLNSM----SG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSL   93 (329)
Q Consensus        21 ~~~~~i~-~TPl~~~~~l~~~----~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~   93 (329)
                      -+.+++| +|||+++++|++.    +|  .+||+|+|++|||||||||++.+++..+.+.+..+.|+++|+||||+|+|+
T Consensus       318 ~~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~~~IvetssGNhG~AlA~  397 (695)
T PRK13802        318 LNQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKTRVIAETGAGQHGVATAT  397 (695)
T ss_pred             HHHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCCCEEEEECcHHHHHHHHH
Confidence            3357898 9999999998753    44  799999999999999999999999998876666667889999999999999


Q ss_pred             HHHHcCCCEEEEEcCC---CCHHHHHHHHHcCCEEEEECC---CHHHHHHHH-HHHHHH-c-CCEeeCCCCCc--c---c
Q 020236           94 AAKLRGIPAYIVIPKN---APKCKVENVVRYGGQVIWSEA---TMHSRESVA-SKVLEE-T-GAVLVHPYNDG--R---I  159 (329)
Q Consensus        94 ~a~~~G~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a-~~~~~~-~-~~~~~~~~~n~--~---~  159 (329)
                      +|+++|++|+||||+.   .+..|+.+|+.+||+|+.++.   +++++.+.+ ++++++ . .+|+++++.|+  +   .
T Consensus       398 aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p~~v  477 (695)
T PRK13802        398 VCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFPAMV  477 (695)
T ss_pred             HHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcHHHH
Confidence            9999999999999985   367899999999999999984   456664444 556665 3 45778888654  2   4


Q ss_pred             ccccCcchHHHHhhCC------CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHH----HHHc--CC--
Q 020236          160 ISGQGTISLEFLEQVP------LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQ----SKAA--GR--  225 (329)
Q Consensus       160 ~~g~~t~~~Ei~~ql~------~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~----~~~~--g~--  225 (329)
                      .+|++++|.||++|+.      .||+||+|+|+||+++|++.+|+. .|.+|+|||||.++.+...    .+..  |.  
T Consensus       478 ~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkligVE~~g~g~~~g~h~~~~~~g~g~~g  556 (695)
T PRK13802        478 RDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLYGYEAGGNGPESGKHAIRFAPGTGELG  556 (695)
T ss_pred             HHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEEEEEecCCCccccchhhhhhhccCCcc
Confidence            5899999999999984      599999999999999999999976 6899999999998743211    1111  22  


Q ss_pred             -----eeec--------CCCCccccccccC-CCcccHHHHhhcCCcE--EEeCHHHHHHHHHHHHHHcCceeCcchHHHH
Q 020236          226 -----IITL--------LETNTVADGLRAF-LGDLTWPIVRDLVDDV--ITVEDKEIIEAMKLCYEILKVAVEPSGAIGL  289 (329)
Q Consensus       226 -----~~~~--------~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~--~~V~d~e~~~a~~~l~~~egi~~~pssa~al  289 (329)
                           ....        ...++++.||+.+ +++..-.  ....+++  +.|+|+|+++++++|++.|||+++|+||+|+
T Consensus       557 ~~~g~~~~~~~~~~g~~~~~~sis~gLdy~gvgp~~~~--l~~~~rv~~~~vtD~eal~a~~~La~~EGIipa~eS~hAv  634 (695)
T PRK13802        557 MFQGAKSYLLENDEGQTLDTYSISAGLDYASVGPEHAW--LKDIGRVNYSWATDEEAMNAFKDLCETEGIIPAIESSHAV  634 (695)
T ss_pred             ccccceeecccCCCCCccCccccccccCCCCCCchhHH--HHhcCCeEEEEECHHHHHHHHHHHHHHcCccccchHHHHH
Confidence                 1111        1236888899864 6654432  2345555  8999999999999999999999999999999


Q ss_pred             HHHhccccccCCCC-C-CCCeEEEEeCC-CCCChHHHHHhh
Q 020236          290 AAVLSDGFRKNPAW-Q-DSKKIGIVLSG-GNVDLGVLWDSF  327 (329)
Q Consensus       290 aa~~~~~~~~~~~~-~-~~~~vv~v~tg-g~~~~~~~~~~~  327 (329)
                      ++++++  +++... . ++++||+++|| |.+|++++.+.+
T Consensus       635 a~a~~~--a~~~~~~~~~~~~Vv~~lsg~GdKdl~~~~~~~  673 (695)
T PRK13802        635 AGAYKA--AADLKAKGYEHPVMIVNISGRGDKDMNTAGKWF  673 (695)
T ss_pred             HHHHHH--HHhcccccCCCCEEEEEECCCCcCCHHHHHHHh
Confidence            999987  443211 1 25699999999 899999998865

>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-52  Score=357.42  Aligned_cols=298  Identities=20%  Similarity=0.257  Sum_probs=252.9

Q ss_pred             ccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHHcC
Q 020236           23 SLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKLRG   99 (329)
Q Consensus        23 ~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~~G   99 (329)
                      ...||+|||++++.|++..|++|+.|.|++||.||.|||.|.++++.|++.++   ...|++.|+||+|+++|..|+.+|
T Consensus        44 ~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~gg~v~EGtaGsTgIslA~v~~a~G  123 (391)
T KOG1481|consen   44 EGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRGGTVVEGTAGSTGISLAHVARALG  123 (391)
T ss_pred             HHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccCceEEecCCCccchhHHHhhhhcC
Confidence            35789999999999999999999999999999999999999999999976654   356999999999999999999999


Q ss_pred             CCEEEEEcCCCCHHHHHHHHHcCCEEEEECC----CHHHHHHHHHH----HHHHc---CCEeeCCCCCcc-cccccCcch
Q 020236          100 IPAYIVIPKNAPKCKVENVVRYGGQVIWSEA----TMHSRESVASK----VLEET---GAVLVHPYNDGR-IISGQGTIS  167 (329)
Q Consensus       100 ~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~----~~~~~~~~a~~----~~~~~---~~~~~~~~~n~~-~~~g~~t~~  167 (329)
                      ++|+|+||++.+.+|.+.++.+||+|..|+.    +.+.-...+++    ...+.   ..+|.+||+|+. ...||.++|
T Consensus       124 yk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~aHyetTG  203 (391)
T KOG1481|consen  124 YKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWLAHYETTG  203 (391)
T ss_pred             cceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHHHHhcCcC
Confidence            9999999999999999999999999998876    22333333444    33332   247889999988 468999999


Q ss_pred             HHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCC-CEEEEEecCCCchHHHHHHcC---------CeeecCCCCccc
Q 020236          168 LEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPA-IRILAAEPIGANDAAQSKAAG---------RIITLLETNTVA  236 (329)
Q Consensus       168 ~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~-~~vi~v~~~~~~~~~~~~~~g---------~~~~~~~~~t~~  236 (329)
                      +|||.|.+ .+|+|++++|||||++|+.+++|+..+. +.++..+|.++. +|.-...|         -..+....+||.
T Consensus       204 PEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~~laDPpGSG-lYnkV~~GVmy~~~e~eG~r~r~q~dti~  282 (391)
T KOG1481|consen  204 PEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAVFLADPPGSG-LYNKVNYGVMYDHIETEGTRRRNQVDTIT  282 (391)
T ss_pred             cHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEEEEeCCCCCc-hhhhhhhhhhhhhhhhcCcccCCCcchhh
Confidence            99999998 8999999999999999999999999876 889999999984 33332222         111223578999


Q ss_pred             cccccCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-
Q 020236          237 DGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-  315 (329)
Q Consensus       237 ~gl~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-  315 (329)
                      +|++...-..++...++++|+.+.|+|++++++.+.|..++|++++.||+.+..|+.++  ++.  ++++.+||+++|+ 
T Consensus       283 EGIGinRiT~Nf~m~~~liD~a~rv~Deqai~Msr~Ll~~dGLFvGsSsa~N~VaAv~v--Ak~--LgpG~~iVtilCDs  358 (391)
T KOG1481|consen  283 EGIGINRITGNFQMAEDLIDDAMRVTDEQAINMSRYLLDNDGLFVGSSSALNCVAAVRV--AKT--LGPGHTIVTILCDS  358 (391)
T ss_pred             hcccccccccccccchhhhhhheecChHHHHHHHHHhhhcCceEecchhhHHHHHHHHH--HHh--cCCCceEEEEEeCC
Confidence            99987633456777889999999999999999999999999999999999999999987  443  5699999999998 


Q ss_pred             CCCChHHHHH
Q 020236          316 GNVDLGVLWD  325 (329)
Q Consensus       316 g~~~~~~~~~  325 (329)
                      |.++++.++.
T Consensus       359 G~rh~sk~~~  368 (391)
T KOG1481|consen  359 GSRHLSKLFS  368 (391)
T ss_pred             cchHHHHhcC
Confidence            8999988764

>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family

Probab=100.00  E-value=7e-52  Score=380.31  Aligned_cols=282  Identities=19%  Similarity=0.177  Sum_probs=229.5

Q ss_pred             cCCCCCccchhhhhhcCCeEEEEecCCCCC--CccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHHHHHHHHcCCC
Q 020236           26 IHKTPVLSSETLNSMSGRSLFFKCECFQKG--GAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAALSLAAKLRGIP  101 (329)
Q Consensus        26 i~~TPl~~~~~l~~~~g~~i~~K~E~~npt--GS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~A~~a~~~G~~  101 (329)
                      ..+|||+++++|+...|.+||+|+|++||+  ||||||++.+++..+.+ .+.++||++  |+||||+|+|++|+.+|++
T Consensus         5 ~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~-~g~~~vv~~g~ssGN~g~alA~~a~~~G~~   83 (311)
T TIGR01275         5 PWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALS-KGADTVITVGAIQSNHARATALAAKKLGLD   83 (311)
T ss_pred             CCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHH-cCCCEEEEcCCchhHHHHHHHHHHHHhCCc
Confidence            469999999999988889999999999998  99999999999998754 466789997  6699999999999999999


Q ss_pred             EEEEEcCCC-CHHHHHHHHHcCCEEEEECC-CHHHHHHHHHHHHHH----c--CCEeeCCCCCcccccccCcchHHHHhh
Q 020236          102 AYIVIPKNA-PKCKVENVVRYGGQVIWSEA-TMHSRESVASKVLEE----T--GAVLVHPYNDGRIISGQGTISLEFLEQ  173 (329)
Q Consensus       102 ~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~a~~~~~~----~--~~~~~~~~~n~~~~~g~~t~~~Ei~~q  173 (329)
                      |++|||+.. +..+..+++.+||+|+.++. ++++..+.+++++++    .  .+++++++.||....|+.++++||++|
T Consensus        84 ~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~g~~~~~~EI~~q  163 (311)
T TIGR01275        84 AVLVLREKEELNGNLLLDKLMGAETRVYSAEEYFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLGTLGYVEAVLEIATQ  163 (311)
T ss_pred             eEEEecCCccCCCCHHHHHHcCCEEEEECchhhhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHHHHHHHHHHHHHHHH
Confidence            999999875 45667788999999999985 455555555555432    2  245567888999999998999999999


Q ss_pred             CC---CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchH-HHHHHcCCeeecCCCCccccccccCCCcccHH
Q 020236          174 VP---LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDA-AQSKAAGRIITLLETNTVADGLRAFLGDLTWP  249 (329)
Q Consensus       174 l~---~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~-~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~  249 (329)
                      ++   +||+||+|+|||||++|++.+||+.+|+++||+|++..+.+. ...+       ....+++++++..+. ...++
T Consensus       164 ~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vigV~~~~~~~~~~~~~-------~~~~~~~~~g~~~~~-~~~~~  235 (311)
T TIGR01275       164 LESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPVGVAVGRFGEDMTDKF-------VNLVKEIAEGLEVKA-SEVIP  235 (311)
T ss_pred             HhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEEEEEecccHHHHHHHH-------HHHHHHHHHHhCCCC-CCCEE
Confidence            96   699999999999999999999999999999999998765322 1111       012345566665321 33455


Q ss_pred             HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCC
Q 020236          250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVD  319 (329)
Q Consensus       250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~  319 (329)
                      ..+++.+..+.|+|+|++++++++++++|+++||+ ||+++++++++  .+++.+ ++++||++||||+.-
T Consensus       236 ~~~~~~~~~~~v~d~e~~~~~~~la~~~gi~vep~~sg~~~aa~~~~--~~~~~~-~~~~vv~i~tGG~~g  303 (311)
T TIGR01275       236 ELDDYSGPGYGKPTSEVAEIVKKVASREGIILDPVYTGKAFYGLIDL--IRKGEL-GEKGILFIHTGGISG  303 (311)
T ss_pred             EECCcccCcCCCCCHHHHHHHHHHHHHhCCccCcchHHHHHHHHHHH--HHhCCC-CCCCEEEEECCCccc
Confidence            66778889999999999999999999999999995 99999999886  444433 367899999999753

This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).

>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=100.00  E-value=9.2e-52  Score=382.98  Aligned_cols=297  Identities=15%  Similarity=0.134  Sum_probs=238.4

Q ss_pred             HHhccccCCCCCccchhhhhhcC--CeEEEEecCCCCC---CccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHHH
Q 020236           20 KRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKG---GAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAALS   92 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g--~~i~~K~E~~npt---GS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~A   92 (329)
                      .++...+++|||++++++++.+|  .+||+|+|++||+   ||||||++.+++.++.+ .+..+|+++  |+||||+|+|
T Consensus         7 ~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~-~G~~~vvs~G~s~GN~g~alA   85 (337)
T PRK12390          7 PRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALA-QGADTLVSIGGVQSNHTRQVA   85 (337)
T ss_pred             CccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHH-cCCCEEEEeCCCccHHHHHHH
Confidence            34566789999999999998888  7999999999987   88899999999998854 466888887  8899999999


Q ss_pred             HHHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCCHH----HHHHHHHHHHHH-cCCEe-eCCCC--C
Q 020236           93 LAAKLRGIPAYIVIPKNAP--------KCKVENVVRYGGQVIWSEATMH----SRESVASKVLEE-TGAVL-VHPYN--D  156 (329)
Q Consensus        93 ~~a~~~G~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~~----~~~~~a~~~~~~-~~~~~-~~~~~--n  156 (329)
                      ++|+.+|++|++|+|...+        ..+..+++.+||+|+.++.+++    ++.+.+.+..++ .+..| +..+.  +
T Consensus        86 ~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (337)
T PRK12390         86 AVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAIPAGASDH  165 (337)
T ss_pred             HHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEeCCcCCCC
Confidence            9999999999999876544        2367789999999999988653    555566666555 44444 43332  2


Q ss_pred             cccccccCcchHHHHhh---CC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCC
Q 020236          157 GRIISGQGTISLEFLEQ---VP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET  232 (329)
Q Consensus       157 ~~~~~g~~t~~~Ei~~q---l~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~  232 (329)
                      +....|+.++++||++|   ++ +||+||+|+|||||++|++.+||..+|++|||+|++.++++++.+-    ...  ..
T Consensus       166 ~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvigV~~~~~~~~~~~~----~~~--~~  239 (337)
T PRK12390        166 PLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVIGIDASAKPEQTRAQ----VLR--IA  239 (337)
T ss_pred             CcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEEEEEecCchHHHHHH----HHH--HH
Confidence            45667888899999998   44 6999999999999999999999999999999999999998775441    100  12


Q ss_pred             CccccccccC--CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeE
Q 020236          233 NTVADGLRAF--LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKI  309 (329)
Q Consensus       233 ~t~~~gl~~~--~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~v  309 (329)
                      .+++++++.+  ..+..|.+..++.|+.|.|+|+|++++++++++++|+++||+ ||+++++++++  .+++.+.++++|
T Consensus       240 ~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~vsd~e~~~a~~~la~~~gi~~ep~ysg~~~aa~~~~--~~~g~~~~~~~v  317 (337)
T PRK12390        240 RNTAELVELGRDITEDDVVLDERYAGPEYGLPNEGTLEAIRLCARLEGMLTDPVYEGKSMHGMIDL--VRKGEFPEGSKV  317 (337)
T ss_pred             HHHHHHhCCCCCCChhhEEEecccccCCCCCCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHH--HhcCCCCCCCeE
Confidence            3444555432  222334556789999999999999999999999999999997 99999999987  777778889999


Q ss_pred             EEEeCCCCCChHHHHH
Q 020236          310 GIVLSGGNVDLGVLWD  325 (329)
Q Consensus       310 v~v~tgg~~~~~~~~~  325 (329)
                      |++||||-.-+..+.+
T Consensus       318 v~~htgg~~~~~~~~~  333 (337)
T PRK12390        318 LYAHLGGVPALNAYSF  333 (337)
T ss_pred             EEEeCCChHhhhcchh
Confidence            9999999544444433

>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase

Probab=100.00  E-value=2.4e-51  Score=380.00  Aligned_cols=299  Identities=15%  Similarity=0.143  Sum_probs=240.9

Q ss_pred             HHhccccCCCCCccchhhhhhcCC--eEEEEecCCCCC---CccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHHH
Q 020236           20 KRISLYIHKTPVLSSETLNSMSGR--SLFFKCECFQKG---GAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAALS   92 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g~--~i~~K~E~~npt---GS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~A   92 (329)
                      .++...+++|||+++++|++.+|.  +||+|+|++||+   ||||||++.+++..++ +.+..+|+++  |+||||+|+|
T Consensus         6 ~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~-~~G~~~vvs~ggs~gN~g~alA   84 (337)
T TIGR01274         6 PRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQ-AQGCTTLVSIGGIQSNQTRQVA   84 (337)
T ss_pred             CccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHH-HcCCCEEEECCCCcchHHHHHH
Confidence            455667899999999999988874  999999999986   7789999999999885 4467788876  7799999999


Q ss_pred             HHHHHcCCCEEEEEcCCCC--------HHHHHHHHHcCCEEEEECCCHH----HHHHHHHHHHHHc-CC-EeeCCCC--C
Q 020236           93 LAAKLRGIPAYIVIPKNAP--------KCKVENVVRYGGQVIWSEATMH----SRESVASKVLEET-GA-VLVHPYN--D  156 (329)
Q Consensus        93 ~~a~~~G~~~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~~----~~~~~a~~~~~~~-~~-~~~~~~~--n  156 (329)
                      ++|+.+|++|++|+|+..+        ..|+.+++.+||+|+.++.+++    +....+.+..++. +. +++..+.  |
T Consensus        85 ~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~~~~~~~  164 (337)
T TIGR01274        85 AVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIPAGCSDH  164 (337)
T ss_pred             HHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeCCCCCCC
Confidence            9999999999999998642        5799999999999999987653    3444444444443 33 5555442  4


Q ss_pred             cccccccCcchHHHHhhC---C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCC
Q 020236          157 GRIISGQGTISLEFLEQV---P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET  232 (329)
Q Consensus       157 ~~~~~g~~t~~~Ei~~ql---~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~  232 (329)
                      +....|+.++++||++|+   + +||+||+|+|||||++|++.+++...+++|||+||+.+++++.....      .+..
T Consensus       165 ~~~~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vigV~~~~~~~~~~~~~------~~~~  238 (337)
T TIGR01274       165 PLGGLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVIGIDASATPEQTRAQI------LRIA  238 (337)
T ss_pred             ccchhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHH------HHHH
Confidence            667788999999999995   3 69999999999999999999999999999999999999977643311      1112


Q ss_pred             CccccccccC--CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeE
Q 020236          233 NTVADGLRAF--LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKI  309 (329)
Q Consensus       233 ~t~~~gl~~~--~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~v  309 (329)
                      .++++++...  ..+..+.+..++.++.|.|+|+|++++++++++++|+++||+ ||++++|++++  .+++.+.++++|
T Consensus       239 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGi~~ep~ytg~~~aa~~~~--~~~g~~~~~~~v  316 (337)
T TIGR01274       239 RNTAEKIGLERDITEDDVVLDTRFAYPEYGVPNEGTLEAIRLCAKMEGVLTDPVYEGKSMHGMIEM--IRRGEFKEGSNV  316 (337)
T ss_pred             HHHHHHhCCCCCcCccceEEeccccCCCcCCCCHHHHHHHHHHHHhcCCccCcchHHHHHHHHHHH--HhcCCCCCCCEE
Confidence            3455555542  111223455678899999999999999999999999999997 99999999987  677778889999


Q ss_pred             EEEeCCCCCChHHHHHhh
Q 020236          310 GIVLSGGNVDLGVLWDSF  327 (329)
Q Consensus       310 v~v~tgg~~~~~~~~~~~  327 (329)
                      |++||||...+-.+.+.+
T Consensus       317 v~~htGG~~~~~~~~~~~  334 (337)
T TIGR01274       317 LYAHLGGAPALNAYSFLF  334 (337)
T ss_pred             EEEeCCChhhhhhhHHHh
Confidence            999999987776666554

This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.

>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia

Probab=100.00  E-value=1.3e-51  Score=377.63  Aligned_cols=279  Identities=16%  Similarity=0.184  Sum_probs=224.6

Q ss_pred             CCCccchhhhhhc--CCeEEEEecCCCCC---CccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHHHHHHHHcCCC
Q 020236           29 TPVLSSETLNSMS--GRSLFFKCECFQKG---GAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAALSLAAKLRGIP  101 (329)
Q Consensus        29 TPl~~~~~l~~~~--g~~i~~K~E~~npt---GS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~A~~a~~~G~~  101 (329)
                      |||+++++|++.+  +.+||+|+|++||+   ||||||++.+++..+.+ .+.+.|+++  |+||||+|+|++|+.+|++
T Consensus         1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~-~g~~~vv~~ggs~GN~g~alA~~a~~~G~~   79 (307)
T cd06449           1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALA-KGADTLVTVGGIQSNHTRQVAAVAAKLGLK   79 (307)
T ss_pred             CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHH-cCCCEEEECCCchhHHHHHHHHHHHHcCCe
Confidence            8999999999877  57999999999999   56799999999998754 456788888  6899999999999999999


Q ss_pred             EEEEEcCCCC--------HHHHHHHHHcCCEEEEECCCHHH----HH-HHHHHHHHHcC-CEe-eCCC-CCcccccccCc
Q 020236          102 AYIVIPKNAP--------KCKVENVVRYGGQVIWSEATMHS----RE-SVASKVLEETG-AVL-VHPY-NDGRIISGQGT  165 (329)
Q Consensus       102 ~~i~~p~~~~--------~~~~~~~~~~Ga~v~~~~~~~~~----~~-~~a~~~~~~~~-~~~-~~~~-~n~~~~~g~~t  165 (329)
                      |++|||+..+        ..|+++++.+||+|+.++.++++    +. +.++++.++.+ .++ .+++ +||...+|+.+
T Consensus        80 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~t  159 (307)
T cd06449          80 CVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLGGLGYVG  159 (307)
T ss_pred             EEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCcccHHHHHH
Confidence            9999999876        46899999999999999876432    12 22333333332 343 5555 49999999999


Q ss_pred             chHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCcccccccc
Q 020236          166 ISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA  241 (329)
Q Consensus       166 ~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~  241 (329)
                      +++||++|++    .||+||+|+|||||++|++.+||+.+|.+|||+|+|.+++++..+....    ... .++ .+.+.
T Consensus       160 ~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~~~~~~~~~~~~~~----~~~-~~~-~~~g~  233 (307)
T cd06449         160 FVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDASAKPEKTKAQVLR----IAQ-AKL-AEEGL  233 (307)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEecCchHHHHHHHHH----HHH-HHH-HHcCC
Confidence            9999999987    5999999999999999999999999999999999999998765431100    000 111 11111


Q ss_pred             CCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCc-chHHHHHHHhccccccCCCCCCCCeEEEEeCCC
Q 020236          242 FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEP-SGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG  316 (329)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~p-ssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg  316 (329)
                      +.+...+.+..++.|+.+.|+|+|++++++++++++|+++|| +||++++++.++  .+++.+.++++||++||||
T Consensus       234 ~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~~Gi~~ep~ytg~~~aa~~~~--~~~~~~~~~~~vv~i~TGG  307 (307)
T cd06449         234 EVKEEDVVLDDDYAAPEYGIPNDETIEAIKLCARLEGIITDPVYEGKSMQGMIDL--VRNGEFKEGSKVLFIHLGG  307 (307)
T ss_pred             CCCcccEEEecCcccCCCCCCCHHHHHHHHHHHHHhCCccccchHHHHHHHHHHH--HhcCCCCCCCeEEEEeCCC
Confidence            112234455677899999999999999999999999999999 599999999987  6666667789999999998

>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-50  Score=373.32  Aligned_cols=291  Identities=24%  Similarity=0.294  Sum_probs=260.1

Q ss_pred             CCCCCccchhhhhhcCC---eEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEE
Q 020236           27 HKTPVLSSETLNSMSGR---SLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAY  103 (329)
Q Consensus        27 ~~TPl~~~~~l~~~~g~---~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~  103 (329)
                      +.||+++.+++...++.   ++|+|.|++|||||||||++..+++.+...++ .+|+++||||+|.|+|+++++.|++|+
T Consensus        75 g~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-~~I~~ASSGnTgAs~aaya~rag~~v~  153 (411)
T COG0498          75 GGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-KTILCASSGNTGASAAAYAARAGLKVF  153 (411)
T ss_pred             ccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-CEEEEeCCchHHHHHHHHhccCCCeEE
Confidence            68999999888887873   59999999999999999999999998855544 899999999999999999999999999


Q ss_pred             EEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--CCCEE
Q 020236          104 IVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--LLDTI  180 (329)
Q Consensus       104 i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--~~d~v  180 (329)
                      |++|++ ++..|+.+|..+|++++.+++++|+|++.+++++++.++++.....||.+++|+.|+++||++|++  .||+|
T Consensus       154 Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~fDda~~~vk~~~~~~~~~~~~nsiNp~rlegq~t~~fe~~~ql~~~~p~~v  233 (411)
T COG0498         154 VLYPKGKVSPGKLAQMLTLGAHVIAVDGNFDDAQELVKEAANREGLLSAVNSINPYRLEGQKTYAFEIAEQLGWKAPDHV  233 (411)
T ss_pred             EEecCCCCCHHHHHHHHhcCCEEEEEcCcHHHHHHHHHHHHhhCCceeeccccCHHHhhhhhhhHhHHHHHhCCCCCCeE
Confidence            999999 999999999999999999999999999999999998787777777899999999999999999998  59999


Q ss_pred             EEeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHH---HH
Q 020236          181 IVPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWP---IV  251 (329)
Q Consensus       181 v~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~---~~  251 (329)
                      ++|+|+||++.|++.++++..|      -++..+|+++++.++...++.++    +.+.|++++|.++.+.+..+   .+
T Consensus       234 ~vPvGn~gni~a~~~g~~~~~~~g~i~~~p~~~~vqaeg~~p~~~~~~~~~----~~~~T~a~am~I~~p~n~~r~l~a~  309 (411)
T COG0498         234 VVPVGNGGNLLAIYKGFKEGLPIGKIDKAPNMNGVQAEGFSPGVYAWKEGR----ETPETIAPAMDIGNPSNWERALFAL  309 (411)
T ss_pred             EEeCCchHHHHHHHHHHHhcccccchhcCchhhhhhHhhccchhhhccccc----ccccccccccccCCCCCHHHHHHHH
Confidence            9999999999999999999875      36889999999999988888775    45779999999864443333   33


Q ss_pred             hhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHH
Q 020236          252 RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWD  325 (329)
Q Consensus       252 ~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~  325 (329)
                      ++..+..+.|||+|++++++++++++|+++||+||++++++++.  .++ .++++.++|++.|| |.++++.++.
T Consensus       310 ~es~g~~~~vsdeEi~~a~~~l~~~eG~~~eP~sA~ava~l~k~--~~~-~i~~~~~vV~v~Tg~~~K~~~~v~~  381 (411)
T COG0498         310 RESGGLAVAVSDEEILEAIKLLAEREGILIEPHSAVAVAALLKL--REK-IIDPDETVVLVLTGHGLKFPDTVEE  381 (411)
T ss_pred             HhcCCceEEeCHHHHHHHHHHHHHhCCcccCccHHHHHHHHHHH--HHh-hcCCCCeEEEEecCCcccChhHHHh
Confidence            45567799999999999999999999999999999999999988  665 66788999999999 7899998765

>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional

Probab=100.00  E-value=3.7e-47  Score=350.75  Aligned_cols=287  Identities=17%  Similarity=0.134  Sum_probs=219.8

Q ss_pred             HHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCC--CccchhhHHHHHhcCchhccCCeEE--EECCchHHHHHHH
Q 020236           18 AQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKG--GAFKFRGASNAVLSLDEDQAIKGVV--THSSGNHAAALSL   93 (329)
Q Consensus        18 ~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~npt--GS~KdR~a~~~l~~a~~~~~~~~vv--~~ssGN~g~a~A~   93 (329)
                      .++++....++|||++++++++..|.+||+|+|++||+  ||||||++.+++..+.++ +.++|+  ++|+||||+|+|+
T Consensus        11 ~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~-G~~~vv~~~~ssGN~g~alA~   89 (329)
T PRK14045         11 KFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSR-GADVVITVGAVHSNHAFVTGL   89 (329)
T ss_pred             cCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHc-CCCEEEEeCccHHHHHHHHHH
Confidence            44677788899999999999988889999999999997  899999999999987544 556776  4899999999999


Q ss_pred             HHHHcCCCEEEEEcCCCCHH-HHHHHHHcCCEEEEECC--C---HHHHHHHHHHHHHHc-CCEe-eCCCCCcccccccCc
Q 020236           94 AAKLRGIPAYIVIPKNAPKC-KVENVVRYGGQVIWSEA--T---MHSRESVASKVLEET-GAVL-VHPYNDGRIISGQGT  165 (329)
Q Consensus        94 ~a~~~G~~~~i~~p~~~~~~-~~~~~~~~Ga~v~~~~~--~---~~~~~~~a~~~~~~~-~~~~-~~~~~n~~~~~g~~t  165 (329)
                      +|+.+|++|++|+|...+.. +..+++.+||+++.++.  +   .+.+.+.++++.++. ..++ .+++.|+....|+.+
T Consensus        90 ~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~~~g~~~  169 (329)
T PRK14045         90 AAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVGTLGYVR  169 (329)
T ss_pred             HHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHH
Confidence            99999999999999875433 66678999999998863  2   234555666666554 3444 466778988888877


Q ss_pred             chHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCc-hHHHHHHcCCeeecCCCCccccccc
Q 020236          166 ISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGAN-DAAQSKAAGRIITLLETNTVADGLR  240 (329)
Q Consensus       166 ~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~-~~~~~~~~g~~~~~~~~~t~~~gl~  240 (329)
                      ...||++|++    ++|+||+|+|||||++|++.++|..+|++|||+|++.+.. .+.+.+......    .. -..|+.
T Consensus       170 ~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~~~~~~~~~~~~~~~~~~----~~-~~~g~~  244 (329)
T PRK14045        170 AVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAVGSFGEKMKEKVKNLVKK----TK-ELLGVK  244 (329)
T ss_pred             HHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEecCCHHHHHHHHHHHHHH----HH-HHhCCC
Confidence            7779999986    6999999999999999999999999999999999997632 233222111000    00 001211


Q ss_pred             cCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCc-chHHHHHHHhccccccCCCCCCCCeEEEEeCCCC
Q 020236          241 AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEP-SGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGN  317 (329)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~p-ssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~  317 (329)
                      ...  ..+.+.+.+.|++..++ +|+++++++++++|||++|| +||+++++++++  .+++.  .+++||+|||||-
T Consensus       245 ~~~--~~~~~~d~~~~~y~~~~-~e~~~~~~~la~~eGi~ldpvytgk~~~a~~~~--~~~~~--~~~~iv~ihtGG~  315 (329)
T PRK14045        245 VKV--QEPELYDYSFGEYGKIT-KEVAKLIRSVGTMEGLILDPVYTGKAFYGLMDL--AKKGE--LGEKILFIHTGGI  315 (329)
T ss_pred             CCc--cceEecccccCCCCCCC-HHHHHHHHHHHHhhCCCCccchHHHHHHHHHHH--HHcCC--CCCCEEEEECCCc
Confidence            111  01112233446656666 79999999999999999999 899999999987  55543  2689999999984

>PRK09225 threonine synthase; Validated

Probab=100.00  E-value=7.8e-41  Score=317.31  Aligned_cols=301  Identities=12%  Similarity=0.073  Sum_probs=249.1

Q ss_pred             CCHHHHHHHHHHhccccC---CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHH---HHhcCchhccCCeEEEEC
Q 020236           10 ANFSSIKEAQKRISLYIH---KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASN---AVLSLDEDQAIKGVVTHS   83 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~---~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~---~l~~a~~~~~~~~vv~~s   83 (329)
                      ++.+++.++..+.+..+.   .+||.++.       .++|+...+++||||||||++..   ++.++.+ ++...|+++|
T Consensus        67 i~~~~l~~~i~~ay~~F~~~~~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~~~~Il~AT  138 (462)
T PRK09225         67 IPEDDLKAIIARAYTTFDHPAIAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GEKITILGAT  138 (462)
T ss_pred             CCHHHHHHHHHHHHhcCCCcCccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CCCcEEEEcC
Confidence            677788877776655333   46776653       26899999999999999999988   7777754 4578899999


Q ss_pred             CchHHHHH-HHHHHHcCCCEEEEEcCC-CCHHHHHHHHHc-CCEE--EEECCCHHHHHHHHHHHHHH------cCCEeeC
Q 020236           84 SGNHAAAL-SLAAKLRGIPAYIVIPKN-APKCKVENVVRY-GGQV--IWSEATMHSRESVASKVLEE------TGAVLVH  152 (329)
Q Consensus        84 sGN~g~a~-A~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~-Ga~v--~~~~~~~~~~~~~a~~~~~~------~~~~~~~  152 (329)
                      |||+|.|+ +.++.+.|++|+|++|++ +|+.|+.+|..+ |++|  +.+++++|+|++.++++.++      .+++-.|
T Consensus       139 SGdtG~Aa~aaf~~~~gi~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~fDD~q~~vk~~~~d~~~~~~~~l~saN  218 (462)
T PRK09225        139 SGDTGSAAAEAFRGKPNVRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGNFDDCQALVKAAFNDEELKEKLKLSSAN  218 (462)
T ss_pred             CCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCCHHHHHHHHHHHhhchhhhhcCceEEEe
Confidence            99999988 788999999999999997 999999999999 8976  79999999999999987654      3566677


Q ss_pred             CCCCcccccccCcchHHHHhhCCC----CCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeee
Q 020236          153 PYNDGRIISGQGTISLEFLEQVPL----LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIIT  228 (329)
Q Consensus       153 ~~~n~~~~~g~~t~~~Ei~~ql~~----~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~  228 (329)
                      +. ||.+++|+.++++|+++|+.+    ||.|+||+|+||++.|.+.+.+...|-.|+|+++ ..++++++.+..|...+
T Consensus       219 Si-N~~Ri~gQ~~yyfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~A~-n~n~~l~~~~~~G~y~~  296 (462)
T PRK09225        219 SI-NIGRLLAQIVYYFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKMGLPIKRLIVAT-NENDVLTRFLKTGVYDP  296 (462)
T ss_pred             cc-CHHHHHHHHHHHHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHcCCCcceEEEEe-cCChHHHHHHHcCCCcc
Confidence            64 899999999999999999973    8999999999999999999955545777999998 55667889999987665


Q ss_pred             cCCCCccccccccCCCcccHH------------H---Hh---hcCC---------------cEEEeCHHHHHHHHHHHHH
Q 020236          229 LLETNTVADGLRAFLGDLTWP------------I---VR---DLVD---------------DVITVEDKEIIEAMKLCYE  275 (329)
Q Consensus       229 ~~~~~t~~~gl~~~~~~~~~~------------~---~~---~~~~---------------~~~~V~d~e~~~a~~~l~~  275 (329)
                      .+..+|++++|++..+.+..+            .   ++   +..+               ..+.|+|+|+.++++++++
T Consensus       297 ~~~~~T~s~amdI~~psn~eR~l~~~~~~~~~~v~~~m~~l~~~gg~~~~~~~~~~~~~~f~a~~vsD~ei~~ai~~~~~  376 (462)
T PRK09225        297 RPTVATLSPAMDISVSSNFERLLFDLLGRDAAAVEELMEDLEEKGEYDLSDEELAALREDFSAGSVSDEETLATIREVYE  376 (462)
T ss_pred             CCCCCCcCchhhcCCCCcHHHHHHHhcCCcHHHHHHHHHHHHHcCCcccCHHHHHHhhhcceEEEECHHHHHHHHHHHHH
Confidence            556789999999876665555            2   11   1222               6799999999999999999


Q ss_pred             HcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhh
Q 020236          276 ILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSF  327 (329)
Q Consensus       276 ~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~  327 (329)
                      ++|+++||+||++++++.+.  .     .++.++|++.|+ |.++.+.+.+.+
T Consensus       377 ~~G~~~dPhtAva~aa~~~~--~-----~~~~~~V~l~Ta~p~Kf~~~v~~a~  422 (462)
T PRK09225        377 EYGYLIDPHTAVAYKAAREY--L-----DPGEPGVVLSTAHPAKFPEVVEEAL  422 (462)
T ss_pred             hCCEEECchHHHHHHHHHHh--h-----CCCCCEEEEecCCccCCHHHHHHhc
Confidence            99999999999999999764  2     256788999998 789999888764

>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis

Probab=100.00  E-value=1.3e-39  Score=309.29  Aligned_cols=304  Identities=14%  Similarity=0.075  Sum_probs=246.5

Q ss_pred             CCHHHHHHHHHHhccccC---CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHH---HhcCchh-ccCCeEEEE
Q 020236           10 ANFSSIKEAQKRISLYIH---KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA---VLSLDED-QAIKGVVTH   82 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~---~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~---l~~a~~~-~~~~~vv~~   82 (329)
                      ++-+++.++.++.+..+.   .+||.++.       .++|++..+++||||||||++..+   +.++.++ .+...|+++
T Consensus        66 i~~~~L~~~i~~ay~~F~~~~~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~~~~~Il~A  138 (460)
T cd01560          66 IPEDDLKSLIDRAYSFFRHPDIAPLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRNERITILVA  138 (460)
T ss_pred             CCHHHHHHHHHHHHhcCCCCCccceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcCCCeEEEEc
Confidence            677777777766554332   36766654       278999999999999999999876   5555432 366789999


Q ss_pred             CCchHHHH-HHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCC---EEEEECCCHHHHHHHHHHHHHH------cCCEee
Q 020236           83 SSGNHAAA-LSLAAKLRGIPAYIVIPKN-APKCKVENVVRYGG---QVIWSEATMHSRESVASKVLEE------TGAVLV  151 (329)
Q Consensus        83 ssGN~g~a-~A~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~a~~~~~~------~~~~~~  151 (329)
                      ||||+|.| ++.++.+.|++|+|++|++ +|+.|+.+|..+|+   +++.+++++++|++.++++.++      .+++-.
T Consensus       139 TSGdTG~Aa~aaf~~~~gi~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~fDd~q~~vk~~~~d~~~~~~~~l~sa  218 (460)
T cd01560         139 TSGDTGSAAIEGFRGKPNVDVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEGDFDDCQSLVKALFADEDFNKKLKLSSA  218 (460)
T ss_pred             CCCcHHHHHHHHHhCcCCCEEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcCCHHHHHHHHHHHhcChhhHhcceEEEE
Confidence            99999999 4888999999999999997 99999999999997   8999999999999999887654      356666


Q ss_pred             CCCCCcccccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCe
Q 020236          152 HPYNDGRIISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRI  226 (329)
Q Consensus       152 ~~~~n~~~~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~  226 (329)
                      |+ .|+.+++++.++++|+++|+.     .|+.|+||+|+||.+.|.+.+.+...|-.|+|+++..+ +.+++.+..|..
T Consensus       219 NS-iN~~Ri~~Q~~yyf~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlpi~kli~a~n~n-~il~~~~~~G~y  296 (460)
T cd01560         219 NS-INWARILAQIVYYFYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLPIKKLIVATNEN-DVLRRFFKTGRY  296 (460)
T ss_pred             ec-cCHHHHHHHHHHHHHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCCCccEEEEeCCC-hHHHHHHHcCCC
Confidence            66 489999999999999999986     48999999999999999999977666878999976533 235557788865


Q ss_pred             eec-CCCCccccccccCCCcccHHHHhhcC---C------------------------------cEEEeCHHHHHHHHHH
Q 020236          227 ITL-LETNTVADGLRAFLGDLTWPIVRDLV---D------------------------------DVITVEDKEIIEAMKL  272 (329)
Q Consensus       227 ~~~-~~~~t~~~gl~~~~~~~~~~~~~~~~---~------------------------------~~~~V~d~e~~~a~~~  272 (329)
                      ... +..+|++++|++..+.+..++++...   +                              ..+.|+|+|+.+++++
T Consensus       297 ~~~~~~~~T~spamdI~~psn~eR~L~~l~~~~g~~~~~~m~~~~~~g~~~~~~~~l~~~~~~f~a~~vsD~ei~~~i~~  376 (460)
T cd01560         297 DRRESLKQTLSPAMDILKSSNFERLLFLLAGRDRTKVKMLMEEFEATGFLSLPKEELKKLREDFSSGSVSDEETLETIRE  376 (460)
T ss_pred             cCCCCCCCCcCchhhcCCCCCHHHHHHHHhCCCHHHHHHHHHHHHhcCCEecCHHHHHhhhccceEEEECHHHHHHHHHH
Confidence            444 46789999999876666666665322   1                              5689999999999999


Q ss_pred             HHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          273 CYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       273 l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      +++++|+++||+||++++++.+.  .++    ++..+|++.|+ +.++.+.+.+.+.
T Consensus       377 ~~~~~G~~vdPhtAva~aa~~~~--~~~----~~~~~V~l~Ta~p~Kf~~~v~~a~~  427 (460)
T cd01560         377 VYEETGYLIDPHTAVGVRAAERV--RKS----PGTPGVVLSTAHPAKFPEAVKEALG  427 (460)
T ss_pred             HHHhcCEEECchHHHHHHHHHHH--Hhc----cCCCEEEEecCCcccCHHHHHHhhC
Confidence            99999999999999999999875  332    34678999998 7899998887653

The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.

>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-38  Score=277.44  Aligned_cols=302  Identities=20%  Similarity=0.223  Sum_probs=234.6

Q ss_pred             hccccC-CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236           22 ISLYIH-KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI  100 (329)
Q Consensus        22 ~~~~i~-~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~  100 (329)
                      +.++.| +|||...++|++.+|.+||+|+|++|.||++|...+...+.-|.+-++.+.|.+...|.||.|.|.+|+++|+
T Consensus        49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK~riIAETGAGQHGVAtAta~A~fgl  128 (396)
T COG0133          49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGKTRIIAETGAGQHGVATATAAALFGL  128 (396)
T ss_pred             HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCCceEEeecCCCcccHHHHHHHHHhCC
Confidence            344554 8999999999999999999999999999999999999888877666566667777889999999999999999


Q ss_pred             CEEEEEcCCC---CHHHHHHHHHcCCEEEEECCC---HHHHHHH-HHHHHHH-cCCEeeCCC---CCcc---cccccCcc
Q 020236          101 PAYIVIPKNA---PKCKVENVVRYGGQVIWSEAT---MHSRESV-ASKVLEE-TGAVLVHPY---NDGR---IISGQGTI  166 (329)
Q Consensus       101 ~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~-a~~~~~~-~~~~~~~~~---~n~~---~~~g~~t~  166 (329)
                      +|+|||-...   ...++-.|+.+||+|+.|...   ..++... .+.+... ...+|+-..   .+|+   ...-++.+
T Consensus       129 ~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdFQ~vI  208 (396)
T COG0133         129 ECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDFQSVI  208 (396)
T ss_pred             ceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHHHHHH
Confidence            9999997542   345677899999999999753   4444443 4445554 345555321   2343   23457889


Q ss_pred             hHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCc----hHHHHHHcCCe-----------
Q 020236          167 SLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGAN----DAAQSKAAGRI-----------  226 (329)
Q Consensus       167 ~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~----~~~~~~~~g~~-----------  226 (329)
                      +.|.-+|+-     -||+|+.|+|+|++..|+...|.. .+++++||||+.+..    .-..++..|++           
T Consensus       209 G~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~-d~~V~LiGvEaaG~Gi~t~~HaAtl~~G~~GvlhG~~tyll  287 (396)
T COG0133         209 GEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLIGVEAAGKGIETGKHAATLTAGRPGVLHGMKTYLL  287 (396)
T ss_pred             hHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccC-CCCceEEEeccCcCccCCCccceeecCCCceeeecccceee
Confidence            999888853     399999999999999999988754 378999999988731    11112333332           


Q ss_pred             ----eecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCC
Q 020236          227 ----ITLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNP  301 (329)
Q Consensus       227 ----~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~  301 (329)
                          .++...++|+.||+.+ +|+.+-.+...-....+.|+|+|+++|.+.|.+.|||+.-..|+.|+|.++++  ++..
T Consensus       288 Qd~~GQi~e~hSISAGLDYPgVGPeha~l~~~gRa~y~~itD~EAl~af~~L~r~EGIIPALESsHAlA~a~kl--a~~~  365 (396)
T COG0133         288 QDEDGQILESHSISAGLDYPGVGPEHAYLKDIGRAEYVSITDEEALEAFQLLSRLEGIIPALESSHALAYALKL--APKL  365 (396)
T ss_pred             EcCCCCEeeeeeeccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHh--chhc
Confidence                1223478899999975 88876555555556788999999999999999999999999999999999987  5443


Q ss_pred             CCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          302 AWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       302 ~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                        .+++.||+.+|| |++|..++.+.++
T Consensus       366 --~~~~~ivvnlSGRGDKDv~tv~~~l~  391 (396)
T COG0133         366 --PKDEIIVVNLSGRGDKDVFTVAKLLG  391 (396)
T ss_pred             --CCCcEEEEEccCCCcccHHHHHHHhh
Confidence              366788888999 8999999988764

>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.9e-35  Score=257.44  Aligned_cols=291  Identities=17%  Similarity=0.210  Sum_probs=229.4

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCC--CccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKG--GAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAALSLA   94 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~npt--GS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~A~~   94 (329)
                      ++|+....++||+.+++++++++|.+||+|+||..+.  |.+|.|+..+++.++.. ++.+++|++  ..+||.+++|++
T Consensus         6 f~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~-~g~dTlvT~GgiQSNh~r~tAav   84 (323)
T COG2515           6 FPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALR-KGADTLVTYGGIQSNHVRQTAAV   84 (323)
T ss_pred             CCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhh-cCCcEEEEecccchhHHHHHHHH
Confidence            3456667789999999999999999999999999654  99999999999998854 478899986  559999999999


Q ss_pred             HHHcCCCEEEEEcCCC----CHHHHHHHHHcCCEEEEECCCHHH-----HHHHHHHHHHHcC--CEeeCCCCCccccccc
Q 020236           95 AKLRGIPAYIVIPKNA----PKCKVENVVRYGGQVIWSEATMHS-----RESVASKVLEETG--AVLVHPYNDGRIISGQ  163 (329)
Q Consensus        95 a~~~G~~~~i~~p~~~----~~~~~~~~~~~Ga~v~~~~~~~~~-----~~~~a~~~~~~~~--~~~~~~~~n~~~~~g~  163 (329)
                      |+++|++|+.++....    ...++...+.+|+++..++...+-     ..+.++++.++.+  +..+.+..||....||
T Consensus        85 A~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~~~g~lGy  164 (323)
T COG2515          85 AAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSSPLGALGY  164 (323)
T ss_pred             HHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcCccccccH
Confidence            9999999999996543    234677778899999999874322     2233344444433  3334445688899999


Q ss_pred             CcchHHHHhhCC---CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccc
Q 020236          164 GTISLEFLEQVP---LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR  240 (329)
Q Consensus       164 ~t~~~Ei~~ql~---~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~  240 (329)
                      ...+.||.+|+.   ++|.||+++|||||.+|+..++....++.+|||+...+.+.....   . ...+  ..+.++-++
T Consensus       165 v~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~ViG~~v~~~~~~~~~---q-v~~L--~~~~a~~~~  238 (323)
T COG2515         165 VRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKE---Q-VLNL--AQATAELLG  238 (323)
T ss_pred             HHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceEEEeecCCHHHHHH---H-HHHH--HHHHHHHcC
Confidence            999999999987   699999999999999999999999999999999998877543211   1 0000  011111122


Q ss_pred             cCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCC
Q 020236          241 AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVD  319 (329)
Q Consensus       241 ~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~  319 (329)
                      .. ....|....+|....|++..+|.+++++.+++.|||..||. ++++++++++.  .+++.++.+..|+++|+||-.-
T Consensus       239 ~~-~~~~v~~~~dy~~~~Yg~p~~e~~e~i~~~~~~eGillDpVYtgKam~Glid~--~~k~~f~~~~~vLfiHtGG~~g  315 (323)
T COG2515         239 LG-SEADVLLSDDYHHPGYGKPNEEDIEAIKLLARLEGILLDPVYTGKAMYGLIDL--ARKGEFPDGSPVLFIHTGGAPG  315 (323)
T ss_pred             CC-CCceEEEEecccCCccCCcCHHHHHHHHHHHHhhCcccccccchHHHHHHHHH--HhcccCCCCCceEEEEcCCccc
Confidence            11 23334455678889999999999999999999999999999 99999999998  7888888889999999998543

>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]

Probab=100.00  E-value=5.5e-35  Score=257.31  Aligned_cols=314  Identities=16%  Similarity=0.172  Sum_probs=235.9

Q ss_pred             CCHHHHHHHHHHhcccc-CCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCch
Q 020236           10 ANFSSIKEAQKRISLYI-HKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGN   86 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i-~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN   86 (329)
                      ..++|+++.+..++.++ .+|||++.++|.+.++  .+||+|+|++||+||+|...+...+..+.+.++++.|.+...|.
T Consensus       103 ~~d~df~ee~~eiy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGkknviaETGAGQ  182 (477)
T KOG1395|consen  103 ERDEDFWEEFLEIYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGKKNVIAETGAGQ  182 (477)
T ss_pred             hccchHHHHHHHHHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcccceeeccCCCc
Confidence            45677888888887655 5999999999998775  89999999999999999999999888876665556666678899


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCC---CCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHH-HHHH-cCCEeeC-CCC--
Q 020236           87 HAAALSLAAKLRGIPAYIVIPKN---APKCKVENVVRYGGQVIWSEAT---MHSRESVASK-VLEE-TGAVLVH-PYN--  155 (329)
Q Consensus        87 ~g~a~A~~a~~~G~~~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~-~~~~-~~~~~~~-~~~--  155 (329)
                      ||.|+|.+|+++|++|+|+|-..   ....++-+||.+||+|+.+...   ..++-..+-+ +... .-..|+. +-.  
T Consensus       183 hGvatA~a~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gp  262 (477)
T KOG1395|consen  183 HGVATATACAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGP  262 (477)
T ss_pred             cchHHHHHHHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCC
Confidence            99999999999999999999654   3456788999999999999763   2222222222 2222 1223332 212  


Q ss_pred             Cccc---ccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC----chHHHHHHc
Q 020236          156 DGRI---ISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA----NDAAQSKAA  223 (329)
Q Consensus       156 n~~~---~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~----~~~~~~~~~  223 (329)
                      +|+.   -.=+.+++-|-..|.-     .||.||.|+|+|++.+|+..-|..- ..++.++|+..+.    +.....+..
T Consensus       263 hp~pt~vr~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~d-k~v~~igveaagdg~dtp~hsatlta  341 (477)
T KOG1395|consen  263 HPYPTVVRTFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIRD-KSVGMIGVEAAGDGVDTPKHSATLTA  341 (477)
T ss_pred             CCcHHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhcc-chhheeeeeecccccCCcchhceeec
Confidence            2221   1335677777665532     4999999999999999999888653 3578888876652    222222333


Q ss_pred             CCe---------------eecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHH
Q 020236          224 GRI---------------ITLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAI  287 (329)
Q Consensus       224 g~~---------------~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~  287 (329)
                      |++               ...-.+++|..||+.+ +++..-.+...-..+++.++|.|++++.+.+++.|||+.-|.+..
T Consensus       342 gd~Gv~hG~~ty~lq~~dGqi~~phsIsAGLdYpGvgPels~~k~~grae~isitd~eclegfk~~srlEGIIPAlEssH  421 (477)
T KOG1395|consen  342 GDVGVFHGVTTYVLQDTDGQIFDPHSISAGLDYPGVGPELSHLKETGRAEFISITDAECLEGFKQLSRLEGIIPALESSH  421 (477)
T ss_pred             ccccccccceeeeeeccCCccccCCccccCCCCCCCChhHHHHHhcCceeEEecChHHHHHHHHHHHHhcccccCCchhh
Confidence            322               1112478899999875 777766666666778999999999999999999999999999999


Q ss_pred             HHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          288 GLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       288 alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      |+++..++  .+.  +++++.||+.+|| |.+|+..+.+.|.
T Consensus       422 Ava~~~~l--ck~--l~~~k~ivi~~sGrGdkDvqS~~kyL~  459 (477)
T KOG1395|consen  422 AVAGEAEL--CKT--LPEDKVIVINISGRGDKDVQSVAKYLP  459 (477)
T ss_pred             HHHHHHHh--ccc--cCCCcEEEEEecCCCCchHHHHHHhcc
Confidence            99997765  443  4689999999999 9999999988775

>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=238.45  Aligned_cols=301  Identities=22%  Similarity=0.260  Sum_probs=222.6

Q ss_pred             CCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEE
Q 020236           27 HKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYI  104 (329)
Q Consensus        27 ~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i  104 (329)
                      .+|||+|..+|.+.+|  .+||+|.|+..||||||...|.....++..++-.+.+.+...|.+|.|++.+|+.+|++|+|
T Consensus        77 RPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~~rl~TETGAGQWGsAlslA~alf~lk~~V  156 (432)
T COG1350          77 RPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGAKRLTTETGAGQWGSALSLAAALFGLKATV  156 (432)
T ss_pred             CCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCceeeecccCCchHHHHHHHHHHHhCceeEE
Confidence            5999999999999887  89999999999999999999999999886654444444467799999999999999999999


Q ss_pred             EEcCC---CCHHHHHHHHHcCCEEEEECCCHHH------------------HHHHHHHHHHH-cCCEeeCCCCCcccccc
Q 020236          105 VIPKN---APKCKVENVVRYGGQVIWSEATMHS------------------RESVASKVLEE-TGAVLVHPYNDGRIISG  162 (329)
Q Consensus       105 ~~p~~---~~~~~~~~~~~~Ga~v~~~~~~~~~------------------~~~~a~~~~~~-~~~~~~~~~~n~~~~~g  162 (329)
                      ||-+.   ..+.++.+|+.+||+|+..|.+.-+                  +...|-+.+-+ .+..|.-..--...+.|
T Consensus       157 ~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~lGSVlnhvllh  236 (432)
T COG1350         157 FMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSLGSVLNHVLLH  236 (432)
T ss_pred             EEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecchhHHHHHHHH
Confidence            99664   4567888999999999988764322                  23333333333 22334332111236788


Q ss_pred             cCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHh---C-CCCEEEEEecCCCchHHHHHHc---C---Ceee
Q 020236          163 QGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSI---K-PAIRILAAEPIGANDAAQSKAA---G---RIIT  228 (329)
Q Consensus       163 ~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~---~-~~~~vi~v~~~~~~~~~~~~~~---g---~~~~  228 (329)
                      +..+|.|.-+|+.    .||+++-|||+|++++|+..-|-..   + ...++|+|+|..|+.+.+....   +   ...+
T Consensus       237 QTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi~d~l~g~~~~~fiAvep~a~P~lT~GeY~YD~gDtagltP  316 (432)
T COG1350         237 QTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFIGDKLRGKKETRFIAVEPKACPKLTKGEYRYDFGDTAGLTP  316 (432)
T ss_pred             HHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhhhhhhcCCceeEEEEeCCccCCccccceeeccCCchhccch
Confidence            9999999966654    5999999999999999998776332   1 2389999999999876543211   1   1111


Q ss_pred             cCCCCc----------cccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcccc
Q 020236          229 LLETNT----------VADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGF  297 (329)
Q Consensus       229 ~~~~~t----------~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~  297 (329)
                      +-...|          -+.||+.- ..+..--+...-+-+....+++|++++.+.|++.|||+.-|.|+.|+.++++.++
T Consensus       317 llKMyTlGhd~vpPpihAgGLRYHG~aPtls~L~~~Giv~a~ay~Q~Evfeaa~lFa~~EGiVPAPEsaHAi~~aid~A~  396 (432)
T COG1350         317 LLKMYTLGHDYVPPPIHAGGLRYHGVAPTLSLLVKEGIVEARAYDQEEVFEAAVLFARTEGIVPAPESAHAIKAAIDEAL  396 (432)
T ss_pred             hhhhhccCCCccCCCcccccccccCcChHHHHHHHcCcccceecChHHHHHHHHHHHHhcCCccCCcchhhHHHHHHHHH
Confidence            112222          22344431 2232223345566688899999999999999999999999999999999998843


Q ss_pred             ccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          298 RKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       298 ~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      ..+ ..++.++|++.+|| |-.|++.|.+.++
T Consensus       397 ~a~-~~geekvI~fnlSGHGllDL~~Y~~yl~  427 (432)
T COG1350         397 KAR-EEGEEKVILFNLSGHGLLDLSAYDKYLE  427 (432)
T ss_pred             hcc-ccCceeEEEEeccCccccchhhHHHHhh
Confidence            322 23456788999999 8899999998875

>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]

Probab=99.94  E-value=6.4e-26  Score=196.91  Aligned_cols=319  Identities=18%  Similarity=0.173  Sum_probs=250.2

Q ss_pred             CCHHHHHHHHHHhc----------------cccCCCCCccchhhh----hhc----CCeEEEEecCCCCC-CccchhhHH
Q 020236           10 ANFSSIKEAQKRIS----------------LYIHKTPVLSSETLN----SMS----GRSLFFKCECFQKG-GAFKFRGAS   64 (329)
Q Consensus        10 ~~~~~~~~~~~~~~----------------~~i~~TPl~~~~~l~----~~~----g~~i~~K~E~~npt-GS~KdR~a~   64 (329)
                      +.-.|+.++.+|+.                ..|-.+||+.++.+.    +++    ..++|+|++++-|- ||+|.|+-.
T Consensus        44 l~~~dv~dA~~Rl~RFAPyiak~FPeT~~~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGI  123 (443)
T COG3048          44 LTEQDVQDAEARLQRFAPYIAKAFPETAATGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGI  123 (443)
T ss_pred             CchhHHHHHHHHHHHhhHHHHHhCccccccCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccH
Confidence            45566666665553                234578999987743    333    25899999999995 999999987


Q ss_pred             HHHhc-Cc----hhc--------------------cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH
Q 020236           65 NAVLS-LD----EDQ--------------------AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVV  119 (329)
Q Consensus        65 ~~l~~-a~----~~~--------------------~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~  119 (329)
                      |-+.. |+    +.+                    ..-.|.+.|+||.|.++...++.+|+++++-|..++.+.|.+.+|
T Consensus       124 YEVL~hAE~LAle~Gll~~~DDYs~L~~~~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LR  203 (443)
T COG3048         124 YEVLKHAEKLALEAGLLTLEDDYSILLSEEFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLR  203 (443)
T ss_pred             HHHHHHHHHHHHhcCcccccchHHHhhcHHHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHH
Confidence            76553 21    111                    023588899999999999999999999999999999999999999


Q ss_pred             HcCCEEEEECCCHHHHHHHHHHHHHH-cCCEeeCCCCCcccccccCcchHHHHhhCC---------CCCEEEEeCCCChH
Q 020236          120 RYGGQVIWSEATMHSRESVASKVLEE-TGAVLVHPYNDGRIISGQGTISLEFLEQVP---------LLDTIIVPISGGGL  189 (329)
Q Consensus       120 ~~Ga~v~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~---------~~d~vv~~~GtGg~  189 (329)
                      ..|.+|+..+.||..+.+.-++-++. +..||++.-++.....||...+..+-.|+.         .|-.|..|+|-||.
T Consensus       204 s~gV~ViEYe~DY~~AVeeGRk~a~~DP~c~FiDDE~S~~LFLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGg  283 (443)
T COG3048         204 SHGVTVVEYEQDYGVAVEEGRKEAESDPNCFFIDDENSRTLFLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGG  283 (443)
T ss_pred             hcCceEEEecchhhHHHHHhhhhhccCCceEEecccchhhhhhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCC
Confidence            99999999999999998888887766 578888875555567899999999988875         26689999999999


Q ss_pred             HHHHHHHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecC------CCCccccccccC-CCcccHHHHhhcCCcEEEe
Q 020236          190 ISGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLL------ETNTVADGLRAF-LGDLTWPIVRDLVDDVITV  261 (329)
Q Consensus       190 ~~Gi~~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~------~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V  261 (329)
                      -.|++.++|..+ .++.++-+||..+|||.-.+..|....+.      ...|-++|+..+ ++...-+.+++..+..++|
T Consensus       284 PGGVafGLKl~fgd~VhcfFaEPthsPcMlLGv~tGlHe~ISVqdiGidn~TaADGLAVgRpSgfVgr~me~lL~G~~Tv  363 (443)
T COG3048         284 PGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVYTGLHEQISVQDIGIDNLTAADGLAVGRPSGFVGRAMERLLDGYYTV  363 (443)
T ss_pred             cchhhhhhHhhhcCceEEEEecCCCChHHHHhhhhccccceeeEeecccccccccceeecCccchHHHHHHHHhCCcEEe
Confidence            999999999986 78999999999999999888887433221      355778898876 4455566788999999999


Q ss_pred             CHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccC------C---CCCCCCeEEEEeCCCC-CChHHHHHhhh
Q 020236          262 EDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN------P---AWQDSKKIGIVLSGGN-VDLGVLWDSFR  328 (329)
Q Consensus       262 ~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~------~---~~~~~~~vv~v~tgg~-~~~~~~~~~~~  328 (329)
                      +|+..++..++|++.||+.++||+-+++++-.+.--...      +   .--.+.+.++.-|||. +.-+..+..++
T Consensus       364 dD~~ly~lL~~L~~~e~~rlEPSalAgm~Gp~~~~~~~~g~~~~~~~~~~~~~natHlvWaTGG~MVPeeeM~~yl~  440 (443)
T COG3048         364 DDQTLYDLLGWLAQEEGIRLEPSALAGMAGPQRVCASVEGYRYRHGFSAEQLNNATHLVWATGGGMVPEEEMEAYLA  440 (443)
T ss_pred             chHHHHHHHHHHHHhcCcccCchhhhcccCcceeeechhHHHHHhhchhhhhcCeeEEEEecCCCcCCHHHHHHHHh
Confidence            999999999999999999999998888887666510010      0   1113568889999864 55555665554

>KOG2616 consensus Pyridoxalphosphate-dependent enzyme/predicted threonine synthase [Amino acid transport and metabolism]

Probab=96.41  E-value=0.011  Score=50.31  Aligned_cols=96  Identities=13%  Similarity=0.098  Sum_probs=67.5

Q ss_pred             HhC-CCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccccccCCCcccHHHHhhc----------------------
Q 020236          199 SIK-PAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADGLRAFLGDLTWPIVRDL----------------------  254 (329)
Q Consensus       199 ~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~gl~~~~~~~~~~~~~~~----------------------  254 (329)
                      .++ |.-+++.....+ +-+++.++.|+....+ ...|+++.|++-++.++.+.++-.                      
T Consensus        55 kmGlPirklviAtNeN-dIl~rf~ktG~yelsekvaaT~spamDIlvssN~ER~lwlla~~d~qi~~~l~nefe~~~~~q  133 (266)
T KOG2616|consen   55 KMGLPIRKLVIATNEN-DILHRFVKTGDYELSEKVAATLSPAMDILVSSNFERVLWLLAGSDSQITRALMNEFERTGSVQ  133 (266)
T ss_pred             HcCCchhheeeecccc-HHHHHHHHcCchhhhHHHHhhcCcchhhcccccHHHHHHHHhCChHHHHHHHHHHHhhCCcee
Confidence            444 544466555554 5689999999765433 345777777765554444433200                      


Q ss_pred             -----------CCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcc
Q 020236          255 -----------VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSD  295 (329)
Q Consensus       255 -----------~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~  295 (329)
                                 -.....||++|+.++++.+++..+++++|++|+++-...+.
T Consensus       134 v~kel~ekls~dftse~vS~ee~~~ti~k~yes~~YiLdPHTAVav~~~~r~  185 (266)
T KOG2616|consen  134 VPKELHEKLSEDFTSERVSNEETTQTIKKIYESNHYILDPHTAVAVNYHYRQ  185 (266)
T ss_pred             cCHHHHHHHHHhhhhhhcCcHHHHHHHHHHhccCCeeecCchHHHHHHHHHH
Confidence                       01367899999999999999999999999999999887765

>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli

Probab=94.33  E-value=0.16  Score=42.35  Aligned_cols=118  Identities=14%  Similarity=0.113  Sum_probs=73.0

Q ss_pred             HHHHHHHHHHcCCCEE-EEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcc
Q 020236           88 AAALSLAAKLRGIPAY-IVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTI  166 (329)
Q Consensus        88 g~a~A~~a~~~G~~~~-i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~  166 (329)
                      |..+.++++.+|.++. -+.+.+.-..-.+.+...|-.|.+++++.+...+.++.+.++....-+..+.++..   ...-
T Consensus        13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f---~~~~   89 (172)
T PF03808_consen   13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYF---DEEE   89 (172)
T ss_pred             CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCC---Chhh
Confidence            5788999999998883 33333333455667777899999999988777777777777742222222223222   1223


Q ss_pred             hHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEE
Q 020236          167 SLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAA  209 (329)
Q Consensus       167 ~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v  209 (329)
                      -.+|.+++.  .||.|+++.|+.--=. .....+...+..-+++|
T Consensus        90 ~~~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~i~v  133 (172)
T PF03808_consen   90 EEAIINRINASGPDIVFVGLGAPKQER-WIARHRQRLPAGVIIGV  133 (172)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEE
Confidence            345666665  6999999999964322 23334444444444444

Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process

>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins

Probab=90.33  E-value=1.6  Score=36.38  Aligned_cols=117  Identities=16%  Similarity=0.059  Sum_probs=68.4

Q ss_pred             HHHHHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHH-cCCEeeCCCCCcccccccCc
Q 020236           88 AAALSLAAKLRGIPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEE-TGAVLVHPYNDGRIISGQGT  165 (329)
Q Consensus        88 g~a~A~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~~g~~t  165 (329)
                      |..+.++++.+|.+..--++.. .-..-.+.+...+..|.+++++.+...+.++.+.++ ++.-.+..++.+.....   
T Consensus        11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~---   87 (171)
T cd06533          11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEE---   87 (171)
T ss_pred             cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhh---
Confidence            5788999999999832222221 123345556667899999998887777777777776 34333321121211111   


Q ss_pred             chHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEE
Q 020236          166 ISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAA  209 (329)
Q Consensus       166 ~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v  209 (329)
                       -.++.+++.  .||.|+++.|+---=. .....+...+..-+++|
T Consensus        88 -~~~i~~~I~~~~pdiv~vglG~PkQE~-~~~~~~~~l~~~v~~~v  131 (171)
T cd06533          88 -EEEIIERINASGADILFVGLGAPKQEL-WIARHKDRLPVPVAIGV  131 (171)
T ss_pred             -HHHHHHHHHHcCCCEEEEECCCCHHHH-HHHHHHHHCCCCEEEEe
Confidence             123555555  6999999999964322 23334444444555555

E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.07  E-value=39  Score=33.72  Aligned_cols=97  Identities=16%  Similarity=0.251  Sum_probs=67.0

Q ss_pred             CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN  155 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  155 (329)
                      +.+++.+..|+.|+.+|..-+..|.+++++=+   .+.+.+.++..|..++.-|.+.                       
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~~-----------------------  470 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAAN-----------------------  470 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCCC-----------------------
Confidence            46799999999999999998888988876643   2455666666666655543321                       


Q ss_pred             CcccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEe
Q 020236          156 DGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAE  210 (329)
Q Consensus       156 n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~  210 (329)
                                  .|++++.+  +.|.+++.++.-..-.-+....+..+|+.++++..
T Consensus       471 ------------~~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~iiar~  515 (558)
T PRK10669        471 ------------EEIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEIIARA  515 (558)
T ss_pred             ------------HHHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence                        24454444  67888888877555444555667778888888754

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=85.61  E-value=13  Score=32.03  Aligned_cols=48  Identities=25%  Similarity=0.236  Sum_probs=33.9

Q ss_pred             CCeEEEE-CCc---hHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCC
Q 020236           76 IKGVVTH-SSG---NHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGG  123 (329)
Q Consensus        76 ~~~vv~~-ssG---N~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga  123 (329)
                      .+.+|++ |.|   .+.++||.||++-|=+.+.++|+..+ ..-.+.|..+|.
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~   94 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL   94 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence            3556655 444   36899999999999999999998754 234445554553

The function of this family is unknown.

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=85.33  E-value=16  Score=37.09  Aligned_cols=98  Identities=16%  Similarity=0.241  Sum_probs=68.8

Q ss_pred             CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN  155 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  155 (329)
                      ..+++.+..|..|..+|..-+..|++++++   +.++.+.+.++..|.+++.-|.+.                       
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat~-----------------------  453 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDATR-----------------------  453 (621)
T ss_pred             cCcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCCC-----------------------
Confidence            467999999999999999988889988776   233556666677776665544421                       


Q ss_pred             CcccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEec
Q 020236          156 DGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEP  211 (329)
Q Consensus       156 n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~  211 (329)
                                  .|++++.+  +.|.++++++.--.-.-+....|+.+|+.++++-..
T Consensus       454 ------------~~~L~~agi~~A~~vvv~~~d~~~n~~i~~~ar~~~p~~~iiaRa~  499 (621)
T PRK03562        454 ------------MDLLESAGAAKAEVLINAIDDPQTSLQLVELVKEHFPHLQIIARAR  499 (621)
T ss_pred             ------------HHHHHhcCCCcCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence                        24444443  567888888775555556677788888888877543

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=85.06  E-value=5.1  Score=36.22  Aligned_cols=87  Identities=14%  Similarity=0.029  Sum_probs=62.6

Q ss_pred             eEEEEecCCCC-----CCccchhhHHHHHhcCchhccCCeEEE-ECCchHHHHHHHHHHHcCCCEEEEEcCC-CCHHHHH
Q 020236           44 SLFFKCECFQK-----GGAFKFRGASNAVLSLDEDQAIKGVVT-HSSGNHAAALSLAAKLRGIPAYIVIPKN-APKCKVE  116 (329)
Q Consensus        44 ~i~~K~E~~np-----tGS~KdR~a~~~l~~a~~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~i~~p~~-~~~~~~~  116 (329)
                      +-++|.++.-|     |-+.---.|+-|+.+..+-...+.||- +..+--|.++-..|+.+|++.+-++.+. ..++..+
T Consensus       124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~ieel~~  203 (354)
T KOG0025|consen  124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEELKK  203 (354)
T ss_pred             cceEEcCCcCChhhhheeccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHHHHH
Confidence            46677777554     455566677788887654334455555 4456677888888999999999888665 4456778


Q ss_pred             HHHHcCCEEEEECC
Q 020236          117 NVVRYGGQVIWSEA  130 (329)
Q Consensus       117 ~~~~~Ga~v~~~~~  130 (329)
                      +++.+||+.++.+.
T Consensus       204 ~Lk~lGA~~ViTee  217 (354)
T KOG0025|consen  204 QLKSLGATEVITEE  217 (354)
T ss_pred             HHHHcCCceEecHH
Confidence            89999999998754

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=84.82  E-value=47  Score=33.56  Aligned_cols=100  Identities=16%  Similarity=0.163  Sum_probs=72.3

Q ss_pred             CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN  155 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  155 (329)
                      ..+++.+..|..|+.+|..-...|++++++=.   .+.+.+.++..|..++.-|.+.                       
T Consensus       400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~---d~~~v~~~~~~g~~v~~GDat~-----------------------  453 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLER---DISAVNLMRKYGYKVYYGDATQ-----------------------  453 (601)
T ss_pred             cCCEEEecCchHHHHHHHHHHhCCCCEEEEEC---CHHHHHHHHhCCCeEEEeeCCC-----------------------
Confidence            46799999999999999998889999877642   2556666666776665543321                       


Q ss_pred             CcccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCC
Q 020236          156 DGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG  213 (329)
Q Consensus       156 n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~  213 (329)
                                  .|++++.+  +.|.++++++.--.-.-+....|+.+|+.++++-....
T Consensus       454 ------------~~~L~~agi~~A~~vv~~~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~  501 (601)
T PRK03659        454 ------------LELLRAAGAEKAEAIVITCNEPEDTMKIVELCQQHFPHLHILARARGR  501 (601)
T ss_pred             ------------HHHHHhcCCccCCEEEEEeCCHHHHHHHHHHHHHHCCCCeEEEEeCCH
Confidence                        24555544  57889999888666666777788889999998865443

>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family

Probab=83.98  E-value=4.3  Score=34.04  Aligned_cols=116  Identities=9%  Similarity=0.014  Sum_probs=65.5

Q ss_pred             HHHHHHHHHHcCCCEEEEEcC-CCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCc
Q 020236           88 AAALSLAAKLRGIPAYIVIPK-NAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGT  165 (329)
Q Consensus        88 g~a~A~~a~~~G~~~~i~~p~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t  165 (329)
                      |..+.++++.+|.+..--++. +.-..-.+.....|..|.+++++.+...+.++.+.++. +.-.. .++.++..    .
T Consensus        13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~-g~~g~f~~----~   87 (177)
T TIGR00696        13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIV-GAFGPLEP----E   87 (177)
T ss_pred             cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEE-EECCCCCh----H
Confidence            467889999999764322221 11123344456678899999998877777777777763 33222 12111110    1


Q ss_pred             chHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEE
Q 020236          166 ISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAA  209 (329)
Q Consensus       166 ~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v  209 (329)
                      --.+|.+++.  .||.++|+.|+---=. ...-.+...+..-+++|
T Consensus        88 ~~~~i~~~I~~s~~dil~VglG~PkQE~-~~~~~~~~~~~~v~~gv  132 (177)
T TIGR00696        88 ERKAALAKIARSGAGIVFVGLGCPKQEI-WMRNHRHLKPDAVMIGV  132 (177)
T ss_pred             HHHHHHHHHHHcCCCEEEEEcCCcHhHH-HHHHhHHhCCCcEEEEe
Confidence            1134666665  6999999999853111 11223344444555554

The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=83.04  E-value=5.5  Score=34.48  Aligned_cols=51  Identities=16%  Similarity=0.266  Sum_probs=41.3

Q ss_pred             EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236           79 VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA  130 (329)
Q Consensus        79 vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~  130 (329)
                      +|...+|+.|..++.+....+.++.+++.+. +....+.++..|++++..+-
T Consensus         2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~   52 (233)
T PF05368_consen    2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADY   52 (233)
T ss_dssp             EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-T
T ss_pred             EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeeccc
Confidence            5677899999999999888999999998765 45567788889999885443

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6

Probab=80.42  E-value=16  Score=34.66  Aligned_cols=127  Identities=17%  Similarity=0.194  Sum_probs=68.7

Q ss_pred             EEEECCc-hHHHHHHHHHHHcCCCEEEEEc-CCCC----HHHHHHHHHcCC-EEEEECCCHHHHHHHHHHHHHHcCCEee
Q 020236           79 VVTHSSG-NHAAALSLAAKLRGIPAYIVIP-KNAP----KCKVENVVRYGG-QVIWSEATMHSRESVASKVLEETGAVLV  151 (329)
Q Consensus        79 vv~~ssG-N~g~a~A~~a~~~G~~~~i~~p-~~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~a~~~~~~~~~~~~  151 (329)
                      |+..|.| ++...+.+...+.+++++.|.- -+.+    +.-.+....+|| +++.++....=+.+.+....+. +..|-
T Consensus         1 VLAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef~~~~i~~aI~a-nA~Ye   79 (388)
T PF00764_consen    1 VLAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEFAEDYIFPAIKA-NALYE   79 (388)
T ss_dssp             EEE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHHHHHTHHHHHHT-T--BT
T ss_pred             CeeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHHHHHHHHHHHHH-HHHhC
Confidence            4556666 7777888888888899987773 2333    334455678999 9999876322222222222222 33443


Q ss_pred             CCCCCcccccccCcchH---HHHhhCCCCCEEEE-eCCCChHHHHHHHHHHHhCCCCEEEE
Q 020236          152 HPYNDGRIISGQGTISL---EFLEQVPLLDTIIV-PISGGGLISGVALAAKSIKPAIRILA  208 (329)
Q Consensus       152 ~~~~n~~~~~g~~t~~~---Ei~~ql~~~d~vv~-~~GtGg~~~Gi~~~~k~~~~~~~vi~  208 (329)
                      +.|-.. .....--++.   |++++. ..++|.- ++|-|-...=+-.+++.+.|+.++++
T Consensus        80 g~YpL~-tsl~RplIa~~~v~~A~~~-ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~via  138 (388)
T PF00764_consen   80 GRYPLS-TSLARPLIAKKLVEVAREE-GADAVAHGCTGKGNDQVRFELSIRALAPELKVIA  138 (388)
T ss_dssp             TTB--C-CCCHHHHHHHHHHHHHHHH-T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE-
T ss_pred             CCcccc-ccchHHHHHHHHHHHHHHc-CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEec
Confidence            333110 1111112333   344433 4677777 46888888888889999999999876

3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	329
3l6b_A	346	X-Ray Crystal Structure Of Human Serine Racemase In		1e-87
3hmk_A	339	Crystal Structure Of Serine Racemase Length = 339		2e-80
3l6r_A	346	The Structure Of Mammalian Serine Racemase: Evidenc		1e-77
1v71_A	323	Crystal Structure Of S.pombe Serine Racemase Length		2e-60
1ve5_A	311	Crystal Structure Of T.Th. Hb8 Threonine Deaminase		5e-48
2gn0_B	342	Crystal Structure Of Dimeric Biodegradative Threoni		6e-42
1tdj_A	514	Threonine Deaminase (Biosynthetic) From E. Coli Len		3e-34
3iau_A	366	The Structure Of The Processed Form Of Threonine De		2e-33
1pwe_A	327	Rat Liver L-Serine Dehydratase Apo Enzyme Length =		7e-14
4h27_A	364	Modulating The Function Of Human Serine Racemase An		6e-11
2rkb_A	318	Serine Dehydratase Like-1 From Human Cancer Cells L		5e-10
1m54_A	363	Cystathionine-Beta Synthase: Reduced Vicinal Thiols		5e-10
1o58_A	303	Crystal Structure Of O-Acetylserine Sulfhydrylase (		8e-10
1jbq_A	435	Structure Of Human Cystathionine Beta-Synthase: A U		1e-09
1p5j_A	372	Crystal Structure Analysis Of Human Serine Dehydrat		4e-09
3fca_A	291	Genetic Incorporation Of A Metal-Ion Chelating Amin		9e-09
3pc2_A	527	Full Length Structure Of Cystathionine Beta-Synthas		1e-07
2zsj_A	352	Crystal Structure Of Threonine Synthase From Aquife		9e-06
2d1f_A	360	Structure Of Mycobacterium Tuberculosis Threonine S		1e-04
1uim_A	351	Crystal Structure Of Threonine Synthase From Thermu		3e-04

>pdb|3L6B|A Chain A, X-Ray Crystal Structure Of Human Serine Racemase In Complex Malonate A Potent Inhibitor Length = 346

Iteration: 1
 Score =  319 bits (818), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 159/324 (49%), Positives = 225/324 (69%), Gaps = 8/324 (2%)
Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
           +Y  +F+ +++A   I   IH TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct: 4   QYDISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNA 63
Query: 67  VLSLDED---QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
           V SL  D   +  K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG 
Sbjct: 64  VRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGA 123
Query: 124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
            +++ E +  SRE+VA +V EET  ++VHP  +  +I+GQGTI+LE L QVPL+D ++VP
Sbjct: 124 SIVYCEPSDESRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183
Query: 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRAF 242
           + GGG+++G+A+  K++KP++++ AAEP  A+D  QSK  G+++  L    T+ADG+++ 
Sbjct: 184 VGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS 243
Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
           +G  TWPI+RDLVDD+ TV + EI  A +L +E +K+ +EP+  +G+AAVLS  F+    
Sbjct: 244 IGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQT--V 301
Query: 303 WQDSKKIGIVLSGGNVDL--GVLW 324
             + K I IVLSGGNVDL   + W
Sbjct: 302 SPEVKNICIVLSGGNVDLTSSITW 325

>pdb|3HMK|A Chain A, Crystal Structure Of Serine Racemase Length = 339

Iteration: 1
 Score =  295 bits (756), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 158/321 (49%), Positives = 222/321 (69%), Gaps = 6/321 (1%)
Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
           +Y  +F+ +++A   I   +H TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA NA
Sbjct: 4   QYDISFADVEKAHLNIQDSVHLTPVLTSSILNQIAGRNLFFKCELFQKTGSFKIRGALNA 63
Query: 67  VLSLDEDQ---AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
           +  L  D      K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG 
Sbjct: 64  IRGLIPDTLEGKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPNCKKLAIQAYGA 123
Query: 124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
            +++SE +  SRE+VA ++++ET  +LVHP  +  +I+GQGTI+LE L QVPL+D ++VP
Sbjct: 124 SIVYSEPSDESRENVAQRIIQETEGILVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183
Query: 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRAF 242
           + GGG+++G+A+  K++KP++++ AAEP  A+D  QSK  G +   L    T+ADG+++ 
Sbjct: 184 VGGGGMVAGIAITIKTLKPSVKVYAAEPSNADDCYQSKLKGELTPNLHPPETIADGVKSS 243
Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
           +G  TWPI+RDLVDDV TV + EI  A +L +E +K+ +EP+  +GLAAVLS  F+    
Sbjct: 244 IGLNTWPIIRDLVDDVFTVTEDEIKYATQLVWERMKLLIEPTAGVGLAAVLSQHFQT--V 301
Query: 303 WQDSKKIGIVLSGGNVDLGVL 323
             + K I IVLSGGNVDL  L
Sbjct: 302 SPEVKNICIVLSGGNVDLTSL 322

>pdb|3L6R|A Chain A, The Structure Of Mammalian Serine Racemase: Evidence For Conformational Changes Upon Inhibitor Binding Length = 346

Iteration: 1
 Score =  286 bits (732), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 158/324 (48%), Positives = 220/324 (67%), Gaps = 8/324 (2%)
Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA 66
           +Y  +F+ +++A   I   IH TPVL+S  LN ++GR+LFFKCE FQK G+F  RGA NA
Sbjct: 4   QYDISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFXIRGALNA 63
Query: 67  VLSLDED---QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG 123
           V SL  D   +  K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG 
Sbjct: 64  VRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGA 123
Query: 124 QVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVP 183
            +++ E +  SRE+VA +V EET  + VHP  +  +I+GQGTI+LE L QVPL+D ++VP
Sbjct: 124 SIVYCEPSDESRENVAKRVTEETEGIXVHPNQEPAVIAGQGTIALEVLNQVPLVDALVVP 183
Query: 184 ISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII-TLLETNTVADGLRAF 242
           + GGG ++G+A+  K++KP++++ AAEP  A+D  QSK  G++   L    T+ADG+++ 
Sbjct: 184 VGGGGXLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLXPNLYPPETIADGVKSS 243
Query: 243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA 302
           +G  TWPI+RDLVDD+ TV + EI  A +L +E  K+ +EP+  +G+AAVLS  F+    
Sbjct: 244 IGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERXKLLIEPTAGVGVAAVLSQHFQT--V 301
Query: 303 WQDSKKIGIVLSGGNVDL--GVLW 324
             + K I IVLSGGNVDL   + W
Sbjct: 302 SPEVKNICIVLSGGNVDLTSSITW 325

>pdb|1V71|A Chain A, Crystal Structure Of S.pombe Serine Racemase Length = 323

Iteration: 1
 Score =  229 bits (584), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 132/310 (42%), Positives = 192/310 (61%), Gaps = 6/310 (1%)
Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
           +  +  A +RI  + +KTPVL+S T+N      +FFKCE FQK GAFKFRGA NA+  L+
Sbjct: 10  YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 69
Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
           E Q   GV+T SSGNHA A++L+AK+ GIPA I++P +AP+ KV     YGGQVI  +  
Sbjct: 70  EAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY 129
Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
              RE +A ++ E  G  ++ PY+   +++GQGT + E  E+V  LD + V + GGGL+S
Sbjct: 130 KDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLS 189
Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPI 250
           G ALAA+   P   +   EP   ND  QS   G I+ +    T+ADG +   LG+ T+ I
Sbjct: 190 GSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSI 249
Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
           +++ VDD++TV D+E+I+ +K     +K+ VEP+G +  AA      R       +K+IG
Sbjct: 250 IKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAA-----RAMKEKLKNKRIG 304
Query: 311 IVLSGGNVDL 320
           I++SGGNVD+
Sbjct: 305 IIISGGNVDI 314

>pdb|1VE5|A Chain A, Crystal Structure Of T.Th. Hb8 Threonine Deaminase Length = 311

Iteration: 1
 Score =  187 bits (476), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 124/316 (39%), Positives = 190/316 (60%), Gaps = 15/316 (4%)
Query: 11  NFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSL 70
           +   +  A +RI+ Y H+TP+L+S  L+ + G+ L  K E  QK G+FK RGA +  L+L
Sbjct: 3   SLQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALAL 62
Query: 71  DEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130
           +     KG++  SSGNHA  ++ AA++ G+ A +V+P++A   K      YG +V+    
Sbjct: 63  ENP---KGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV 119
Query: 131 TMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLL----DTIIVPISG 186
           T  +RE VA  + EETG  L+HP++D  +I+GQGT  LE L Q   +      ++ P+ G
Sbjct: 120 TAKNREEVARALQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGG 179
Query: 187 GGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITL-LETNTVADGLRAF-LG 244
           GGL++G+A A K++ P   +L  EP  A+DA +S  AGRI+ L     T ADG+R   LG
Sbjct: 180 GGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLG 239
Query: 245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQ 304
           + T+PI+R+ VD ++TV ++ ++EA +L +   K  VEP+GA+ LAAVL  G R      
Sbjct: 240 ERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARL----- 294
Query: 305 DSKKIGIVLSGGNVDL 320
             + + ++LSGGN D 
Sbjct: 295 -PQTLALLLSGGNRDF 309

>pdb|1TDJ|A Chain A, Threonine Deaminase (Biosynthetic) From E. Coli Length = 514

Iteration: 1
 Score =  142 bits (357), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 103/298 (34%), Positives = 165/298 (55%), Gaps = 14/298 (4%)
Query: 29  TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA 88
           TP+   E L+S     +  K E  Q   +FK RGA   +  L E+Q   GV+T S+GNHA
Sbjct: 32  TPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHA 91
Query: 89  AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGA 148
             ++ ++   G+ A IV+P      KV+ V  +GG+V+   A     ++ A ++ ++ G 
Sbjct: 92  QGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGF 151
Query: 149 VLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILA 208
             V P++   +I+GQGT++LE L+Q   LD + VP+ GGGL +GVA+  K + P I+++A
Sbjct: 152 TWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIA 211
Query: 209 AEPIGANDAAQSKA---AGRIITLLETNTVADGLRA-FLGDLTWPIVRDLVDDVITVEDK 264
            E   A D+A  KA   AG  + L      A+G+    +GD T+ + ++ +DD+ITV+  
Sbjct: 212 VE---AEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDIITVDSD 268
Query: 265 EIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQD--SKKIGIVLSGGNVDL 320
            I  AMK  +E ++   EPSGA+ LA     G +K  A  +   +++  +LSG NV+ 
Sbjct: 269 AICAAMKDLFEDVRAVAEPSGALALA-----GMKKYIALHNIRGERLAHILSGANVNF 321

>pdb|3IAU|A Chain A, The Structure Of The Processed Form Of Threonine Deaminase Isoform 2 From Solanum Lycopersicum Length = 366

Iteration: 1
 Score =  139 bits (351), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 136/249 (54%), Gaps = 1/249 (0%)
Query: 28  KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH 87
           ++P+  +E L+   G + + K E  Q+  +F  RGA N + +L  ++  KGV+T S+GNH
Sbjct: 60  ESPLELAEKLSDRLGVNFYIKREDKQRVFSFXLRGAYNMMSNLSREELDKGVITASAGNH 119
Query: 88  AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETG 147
           A  ++LA +     A IV+P   P+ K++ V   GG V+    T    ++ A ++ E+ G
Sbjct: 120 AQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTHALELSEKDG 179
Query: 148 AVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRIL 207
              + P++D  +I GQGTI  E   Q+  +  + +P+ GGGLI+GVA   K I P  +I+
Sbjct: 180 LKYIPPFDDPGVIKGQGTIGTEINRQLKDIHAVFIPVGGGGLIAGVATFFKQIAPNTKII 239
Query: 208 AAEPIGANDAAQSKAAGRIITLLETNTVADGLR-AFLGDLTWPIVRDLVDDVITVEDKEI 266
             EP GA     S   G  + L   +T ADG+  A +G+ T+   ++L+D ++ V +  I
Sbjct: 240 GVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGMVLVANDGI 299
Query: 267 IEAMKLCYE 275
             A+K  Y+
Sbjct: 300 SAAIKDVYD 308

>pdb|1PWE|A Chain A, Rat Liver L-Serine Dehydratase Apo Enzyme Length = 327

Iteration: 1
 Score = 74.7 bits (182), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 77/281 (27%), Positives = 132/281 (46%), Gaps = 16/281 (5%)
Query: 23  SLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTH 82
           SL++ KTP+  S  L+ ++G S+F K +  Q  G+FK RG  + +  +   Q  K  V  
Sbjct: 6   SLHV-KTPLRDSMALSKVAGTSVFLKMDSSQPSGSFKIRGIGH-LCKMKAKQGCKHFVCS 63
Query: 83  SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKV 142
           S+GN   A + AA+  G+PA IV+P   P   +E  ++  G  +     M       +K 
Sbjct: 64  SAGNAGMATAYAARRLGLPATIVVPSTTPALTIER-LKNEGATVEVVGEMLDEAIQLAKA 122
Query: 143 LEET--GAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSI 200
           LE+   G V + P++D  I  G  ++  E  E +      IV     G    +    + +
Sbjct: 123 LEKNNPGWVYISPFDDPLIWEGHTSLVKELKETLSAKPGAIV--LSVGGGGLLCGVVQGL 180
Query: 201 KPA----IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRD-- 253
           +      + I+A E  GA+    +   G+++TL +  +VA  L    +G  T  +  +  
Sbjct: 181 REVGWEDVPIIAMETFGAHSFHAAVKEGKLVTLPKITSVAKALGVNTVGAQTLKLFYEHP 240
Query: 254 LVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLS 294
           +  +VI+  D+E + A++   +  K+ VEP+    LAAV S
Sbjct: 241 IFSEVIS--DQEAVTAIEKFVDDEKILVEPACGAALAAVYS 279

>pdb|4H27|A Chain A, Modulating The Function Of Human Serine Racemase And Human Serine Dehydratase By Protein Engineering Length = 364

Iteration: 1
 Score = 65.1 bits (157), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 72/280 (25%), Positives = 125/280 (44%), Gaps = 13/280 (4%)
Query: 28  KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH 87
           KTP+  S  L+ M+G S++ K +  Q  G+F  RG  +      + Q     V  SSGN 
Sbjct: 46  KTPIRDSMALSKMAGTSVYLKMDSAQPSGSFXIRGIGHFCKRWAK-QGCAHFVCSSSGNA 104
Query: 88  AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV-IWSEATMHSRESVASKVLEET 146
             A + AA+  G+PA IV+P   P   +E +   G  V +  E    + E   +      
Sbjct: 105 GMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDEAFELAKALAKNNP 164
Query: 147 GAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPA--- 203
           G V + P++D  I  G  +I  E  E   L +         G    +    + ++     
Sbjct: 165 GWVYIPPFDDPLIWEGHASIVKELKET--LWEKPGAIALSVGGGGLLCGVVQGLQEVGWG 222
Query: 204 -IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRD--LVDDVI 259
            + ++A E  GA+    +  AG++++L +  +VA  L    +G     + ++  +  +VI
Sbjct: 223 DVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGAQALKLFQEHPIFSEVI 282
Query: 260 TVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK 299
           +  D+E + A++   +  K+ VEP+    LAAV S   +K
Sbjct: 283 S--DQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQK 320

>pdb|2RKB|A Chain A, Serine Dehydratase Like-1 From Human Cancer Cells Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 134/281 (47%), Gaps = 18/281 (6%)
Query: 29  TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA 88
           TP+L S  L+ ++G  +F KCE  Q  G+FK RG  +    + + +  + +V  S GN  
Sbjct: 8   TPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAK-KGCRHLVCSSGGNAG 66
Query: 89  AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV-----IWSEATMHSRESVASKVL 143
            A + AA+  GIPA IV+P++     V+ +   G +V     +W EA + ++E     + 
Sbjct: 67  IAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEANLRAQE-----LA 121
Query: 144 EETGAVLVHPYNDGRIISGQGTI--SLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIK 201
           +  G   V P++   I  G  ++   L+ + + P    ++    GG L   VA   +   
Sbjct: 122 KRDGWENVPPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLLEVGW 181
Query: 202 PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFL---GDLTWPIVRDLVDDV 258
             + I+A E  GA+    +  AG+++TL +  +VA  L A       L    V  +  +V
Sbjct: 182 QHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQVCKIHSEV 241
Query: 259 ITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK 299
             VED E + A++   +  ++ VEP+    LAA+ S   R+
Sbjct: 242 --VEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRR 280

>pdb|1M54|A Chain A, Cystathionine-Beta Synthase: Reduced Vicinal Thiols Length = 363

Iteration: 1
 Score = 61.6 bits (148), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 11/181 (6%)
Query: 45  LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---GVVTHSSGNHAAALSLAAKLRGIP 101
           L  KCE F  GG+ K R +   +   + D  +K    ++  +SGN    L+LAA +RG  
Sbjct: 62  LLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYR 121
Query: 102 AYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRES---VASKVLEE--TGAVLVHPY 154
             IV+P+     KV+ +   G +++   + A   S ES   VA ++  E     +L    
Sbjct: 122 CIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYR 181
Query: 155 NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG 213
           N    ++   T + E L+Q    LD ++  +  GG I+G+A   K   P  RI+  +P G
Sbjct: 182 NASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEG 241
Query: 214 A 214
           +
Sbjct: 242 S 242

>pdb|1O58|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase (Tm0665) From Thermotoga Maritima At 1.80 A Resolution Length = 303

Iteration: 1
 Score = 61.2 bits (147), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 45/261 (17%)
Query: 26  IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK-GVVTHSS 84
           I  TP++  ++++S     +F K E    GG+ K R A   +L  ++   +K G+V  +S
Sbjct: 18  IGSTPIVRLDSIDS----RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTS 73
Query: 85  GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESV--ASKV 142
           GN   A+++    RG    + +P+     + + +   G +++ +   +  + +V  A ++
Sbjct: 74  GNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEI 133
Query: 143 LEETGAVLVH----PYNDGRIISGQGTISLEFLEQVPL-LDTIIVPISGGGLISGVALAA 197
             ETGA +++    PYN   + S Q T   E L+Q+   +D  +  +  GG ISGV    
Sbjct: 134 SRETGAHMLNQFENPYN---VYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVL 190
Query: 198 KSI-KPAIRILAAEPIGA---------NDAAQSKAAGRIITLLETNTVADGLRAFLGDLT 247
           K      ++I+A EP  +           A Q   AG +  +L+                
Sbjct: 191 KGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILD---------------- 234
Query: 248 WPIVRDLVDDVITVEDKEIIE 268
               R ++D+VITVED+E  E
Sbjct: 235 ----RSVIDEVITVEDEEAYE 251

>pdb|1JBQ|A Chain A, Structure Of Human Cystathionine Beta-Synthase: A Unique Pyridoxal 5'- Phosphate Dependent Hemeprotein Length = 435

Iteration: 1
 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 85/181 (46%), Gaps = 11/181 (6%)
Query: 45  LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---GVVTHSSGNHAAALSLAAKLRGIP 101
           L  KCE F  GG+ K R +   +   + D  +K    ++  +SGN    L+LAA +RG  
Sbjct: 127 LLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYR 186
Query: 102 AYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRES---VASKVLEE--TGAVLVHPY 154
             IV+P+     KV+ +   G +++   + A   S ES   VA ++  E     +L    
Sbjct: 187 CIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYR 246
Query: 155 NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG 213
           N    ++   T + E L+Q    LD ++  +  GG I+G+A   K   P  RI+  +P G
Sbjct: 247 NASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEG 306
Query: 214 A 214
           +
Sbjct: 307 S 307

>pdb|1P5J|A Chain A, Crystal Structure Analysis Of Human Serine Dehydratase Length = 372

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 71/280 (25%), Positives = 125/280 (44%), Gaps = 13/280 (4%)
Query: 28  KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH 87
           KTP+  S  L+ M+G S++ K +  Q  G+FK RG  +      + Q     V  S+GN 
Sbjct: 46  KTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAK-QGCAHFVCSSAGNA 104
Query: 88  AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV-IWSEATMHSRESVASKVLEET 146
             A + AA+  G+PA IV+P   P   +E +   G    +  E    + E   +      
Sbjct: 105 GMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAKALAKNNP 164
Query: 147 GAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPA--- 203
           G V + P++D  I  G  +I  E  E   L +         G    +    + ++     
Sbjct: 165 GWVYIPPFDDPLIWEGHASIVKELKET--LWEKPGAIALSVGGGGLLCGVVQGLQECGWG 222
Query: 204 -IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRD--LVDDVI 259
            + ++A E  GA+    +  AG++++L +  +VA  L    +G     + ++  +  +VI
Sbjct: 223 DVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEVI 282
Query: 260 TVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK 299
           +  D+E + A++   +  K+ VEP+    LAAV S   +K
Sbjct: 283 S--DQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQK 320

>pdb|3FCA|A Chain A, Genetic Incorporation Of A Metal-Ion Chelating Amino Acid Into Proteins As Biophysical Probe Length = 291

Iteration: 1
 Score = 57.8 bits (138), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 65/261 (24%), Positives = 117/261 (44%), Gaps = 45/261 (17%)
Query: 26  IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK-GVVTHSS 84
           I  TP++  ++++S     +  K E    GG+ K R A   +L  ++   +K G+V  +S
Sbjct: 6   IGSTPIVRLDSIDS----RIXLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTS 61
Query: 85  GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESV--ASKV 142
           GN   A+++    RG    + +P+     + + +   G +++ +   +  + +V  A ++
Sbjct: 62  GNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEI 121
Query: 143 LEETGAVLVH----PYNDGRIISGQGTISLEFLEQVPL-LDTIIVPISGGGLISGVALAA 197
             ETGA +++    PYN   + S Q T   E L+Q+   +D  +  +  GG ISGV    
Sbjct: 122 SRETGAHMLNQFENPYN---VYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVGRVL 178
Query: 198 KSI-KPAIRILAAEPIGA---------NDAAQSKAAGRIITLLETNTVADGLRAFLGDLT 247
           K      ++I+A EP  +           A Q   AG +  +L+                
Sbjct: 179 KGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQGIGAGFVPKILD---------------- 222
Query: 248 WPIVRDLVDDVITVEDKEIIE 268
               R ++D+VITVED+E  E
Sbjct: 223 ----RSVIDEVITVEDEEAYE 239

>pdb|3PC2|A Chain A, Full Length Structure Of Cystathionine Beta-Synthase From Drosophila Length = 527

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 85/181 (46%), Gaps = 11/181 (6%)
Query: 45  LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---GVVTHSSGNHAAALSLAAKLRGIP 101
           ++ KCE    GG+ K R     V   +E   +K    ++  +SGN    L++A  ++G  
Sbjct: 79  MYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTSGNTGIGLAMACAVKGYK 138
Query: 102 AYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRES---VASKVLEET-GAVLVHPY- 154
             IV+P+     KV  +   G ++I   +EA   S E    VA ++  ET  ++++  Y 
Sbjct: 139 CIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYR 198
Query: 155 NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG 213
           N G  ++     + E L Q+   +D I+V     G ISG+    K   P+ +I+  +P G
Sbjct: 199 NAGNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYG 258
Query: 214 A 214
           +
Sbjct: 259 S 259

>pdb|2ZSJ|A Chain A, Crystal Structure Of Threonine Synthase From Aquifex Aeolicus Vf5 Length = 352

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 72/302 (23%), Positives = 129/302 (42%), Gaps = 20/302 (6%)
Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRS--LFFKCECFQKGGAFKFRGASNAVLS 69
           +  + E    ++LY   TP++ ++ L    G    ++ K E     G+FK RG + A+ S
Sbjct: 14  YLPVDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAI-S 72
Query: 70  LDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKC-KVENVVRYGGQVIWS 128
              +   + V+  S+GN +A+ +  A   G+ AY+++PK A    K+   + YG +V+  
Sbjct: 73  KAVEAGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAI 132
Query: 129 EATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEF---LEQVPLLDTIIVPIS 185
           + T     ++  K+ E     +V+  N  R I GQ T + E    L + P  D   +P+ 
Sbjct: 133 QGTFDDALNIVRKIGENFPVEIVNSVNPYR-IEGQKTAAFEICDTLGEAP--DYHFIPVG 189
Query: 186 GGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD 245
             G I+      K      +I     +    A  +    +   +    T+A  ++  +G+
Sbjct: 190 NAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNPQTIATAIK--IGN 247
Query: 246 -LTWPIVRDLVDD----VITVEDKEIIEAMKLCYEILKVAVEPSGA---IGLAAVLSDGF 297
             +W        +    +  V D EI+ A KL      V  EP+ A    GL  ++ +GF
Sbjct: 248 PYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKLVREGF 307
Query: 298 RK 299
            K
Sbjct: 308 FK 309

>pdb|2D1F|A Chain A, Structure Of Mycobacterium Tuberculosis Threonine Synthase Length = 360

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 76/154 (49%), Gaps = 6/154 (3%)
Query: 22  ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVL-SLDEDQAIKGVV 80
           ++L    TP++++  L+  +G ++  K E     G+FK RG + AV  +L   Q  + V+
Sbjct: 32  VTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ--RAVL 89
Query: 81  THSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEATMHSRESVA 139
             S+GN +A+ +  A   GI   ++IP+      K+   V +G ++I  +        +A
Sbjct: 90  CASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELA 149
Query: 140 SKVLEETGAV-LVHPYNDGRIISGQGTISLEFLE 172
            K+  +   + LV+  N  R I GQ T + E ++
Sbjct: 150 RKMAADFPTISLVNSVNPVR-IEGQKTAAFEIVD 182

>pdb|1UIM|A Chain A, Crystal Structure Of Threonine Synthase From Thermus Thermophilus Hb8, Orthorhombic Crystal Form Length = 351

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 6/172 (3%)
Query: 6   EKYAANFSSIKEAQKRISLYIHKTPV--LSSETLNSMSGRSLFFKCECFQKGGAFKFRGA 63
           E+Y  N   + E    ISL    TP+  L         G  L+ K E     G+FK RG 
Sbjct: 7   ERYR-NLLPVSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGM 65
Query: 64  SNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKC-KVENVVRYG 122
           + AV    E  A + V   S+GN AA+ +  A   GI A +V+P       KV   + +G
Sbjct: 66  TLAVSKAVEGGA-QAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHG 124
Query: 123 GQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQV 174
            +++  E        +  K+ E     LV+  N  R + GQ T++ E ++++
Sbjct: 125 ARIVQVEGNFDDALRLTQKLTEAFPVALVNSVNPHR-LEGQKTLAFEVVDEL 175

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	1e-164
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	1e-163
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	1e-151
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	1e-123
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	3e-98
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	8e-98
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	1e-97
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	3e-95
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	4e-69
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	1e-54
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	5e-33
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	3e-32
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	1e-31
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	2e-31
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	9e-14
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	5e-09
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	2e-07
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	3e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	1e-04
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	6e-04
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	7e-04

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A* Length = 346

 Score =  461 bits (1188), Expect = e-164
 Identities = 158/322 (49%), Positives = 223/322 (69%), Gaps = 6/322 (1%)

Query: 6   EKYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASN 65
            +Y  +F+ +++A   I   IH TPVL+S  LN ++GR+LFFKCE FQK G+FK RGA N
Sbjct: 3   AQYDISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALN 62

Query: 66  AVLSLDED---QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYG 122
           AV SL  D   +  K VVTHSSGNH  AL+ AAKL GIPAYIV+P+ AP CK   +  YG
Sbjct: 63  AVRSLVPDALERKPKAVVTHSSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYG 122

Query: 123 GQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIV 182
             +++ E +  SRE+VA +V EET  ++VHP  +  +I+GQGTI+LE L QVPL+D ++V
Sbjct: 123 ASIVYCEPSDESRENVAKRVTEETEGIMVHPNQEPAVIAGQGTIALEVLNQVPLVDALVV 182

Query: 183 PISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET-NTVADGLRA 241
           P+ GGG+++G+A+  K++KP++++ AAEP  A+D  QSK  G+++  L    T+ADG+++
Sbjct: 183 PVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKS 242

Query: 242 FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNP 301
            +G  TWPI+RDLVDD+ TV + EI  A +L +E +K+ +EP+  +G+AAVLS  F+   
Sbjct: 243 SIGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQHFQTVS 302

Query: 302 AWQDSKKIGIVLSGGNVDLGVL 323
              + K I IVLSGGNVDL   
Sbjct: 303 P--EVKNICIVLSGGNVDLTSS 322

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A* Length = 323

 Score =  457 bits (1178), Expect = e-163
 Identities = 131/313 (41%), Positives = 193/313 (61%), Gaps = 6/313 (1%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
           +  +  A +RI  + +KTPVL+S T+N      +FFKCE FQK GAFKFRGA NA+  L+
Sbjct: 10  YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 69

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
           E Q   GV+T SSGNHA A++L+AK+ GIPA I++P +AP+ KV     YGGQVI  +  
Sbjct: 70  EAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY 129

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
              RE +A ++ E  G  ++ PY+   +++GQGT + E  E+V  LD + V + GGGL+S
Sbjct: 130 KDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLS 189

Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPI 250
           G ALAA+   P   +   EP   ND  QS   G I+ +    T+ADG +   LG+ T+ I
Sbjct: 190 GSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSI 249

Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
           +++ VDD++TV D+E+I+ +K     +K+ VEP+G +  AA  +   +       +K+IG
Sbjct: 250 IKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAMKEKL-----KNKRIG 304

Query: 311 IVLSGGNVDLGVL 323
           I++SGGNVD+   
Sbjct: 305 IIISGGNVDIERY 317

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1 Length = 311

 Score =  424 bits (1094), Expect = e-151
 Identities = 124/316 (39%), Positives = 189/316 (59%), Gaps = 15/316 (4%)

Query: 11  NFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSL 70
           +   +  A +RI+ Y H+TP+L+S  L+ + G+ L  K E  QK G+FK RGA +  L+L
Sbjct: 3   SLQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALAL 62

Query: 71  DEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA 130
           +     KG++  SSGNHA  ++ AA++ G+ A +V+P++A   K      YG +V+    
Sbjct: 63  ENP---KGLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV 119

Query: 131 TMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP----LLDTIIVPISG 186
           T  +RE VA  + EETG  L+HP++D  +I+GQGT  LE L Q          ++ P+ G
Sbjct: 120 TAKNREEVARALQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGG 179

Query: 187 GGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITL-LETNTVADGLR-AFLG 244
           GGL++G+A A K++ P   +L  EP  A+DA +S  AGRI+ L     T ADG+R   LG
Sbjct: 180 GGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLG 239

Query: 245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQ 304
           + T+PI+R+ VD ++TV ++ ++EA +L +   K  VEP+GA+ LAAVL  G R      
Sbjct: 240 ERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARLP---- 295

Query: 305 DSKKIGIVLSGGNVDL 320
             + + ++LSGGN D 
Sbjct: 296 --QTLALLLSGGNRDF 309

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2 Length = 514

 Score =  298 bits (766), Expect = 3e-98
 Identities = 98/304 (32%), Positives = 159/304 (52%), Gaps = 14/304 (4%)

Query: 26  IHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSG 85
              TP+   E L+S     +  K E  Q   +FK RGA   +  L E+Q   GV+T S+G
Sbjct: 29  AQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAG 88

Query: 86  NHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI-----WSEATMHSRESVAS 140
           NHA  ++ ++   G+ A IV+P      KV+ V  +GG+V+     + EA        A 
Sbjct: 89  NHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAK-----AI 143

Query: 141 KVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSI 200
           ++ ++ G   V P++   +I+GQGT++LE L+Q   LD + VP+ GGGL +GVA+  K +
Sbjct: 144 ELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQL 203

Query: 201 KPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR-AFLGDLTWPIVRDLVDDVI 259
            P I+++A E   +     +  AG  + L      A+G+    +GD T+ + ++ +DD+I
Sbjct: 204 MPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDII 263

Query: 260 TVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVD 319
           TV+   I  AMK  +E ++   EPSGA+ LA +       N      +++  +LSG NV+
Sbjct: 264 TVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIR---GERLAHILSGANVN 320

Query: 320 LGVL 323
              L
Sbjct: 321 FHGL 324

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A* Length = 372

 Score =  292 bits (750), Expect = 8e-98
 Identities = 81/323 (25%), Positives = 134/323 (41%), Gaps = 18/323 (5%)

Query: 14  SIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDED 73
              E          KTP+  S  L+ M+G S++ K +  Q  G+FK RG  +      + 
Sbjct: 32  RGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ 91

Query: 74  QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI-----WS 128
                 V  S+GN   A + AA+  G+PA IV+P   P   +E +   G           
Sbjct: 92  GC-AHFVCSSAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLD 150

Query: 129 EATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGG 187
           EA   ++           G V + P++D  I  G  +I  E  E +      I + + GG
Sbjct: 151 EAFELAKALAK----NNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGG 206

Query: 188 GLISGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGD 245
           GL+ GV    +      + ++A E  GA+    +  AG++++L +  +VA  L    +G 
Sbjct: 207 GLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGS 266

Query: 246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK-----N 300
               + ++       + D+E + A++   +  K+ VEP+    LAAV S   +K     N
Sbjct: 267 QALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGN 326

Query: 301 PAWQDSKKIGIVLSGGNVDLGVL 323
                   + IV  G N+ L  L
Sbjct: 327 LRTPLPSLVVIVCGGSNISLAQL 349

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens} Length = 318

 Score =  290 bits (745), Expect = 1e-97
 Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 18/305 (5%)

Query: 25  YIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSS 84
           +   TP+L S  L+ ++G  +F KCE  Q  G+FK RG  +    + +    + +V  S 
Sbjct: 4   FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGC-RHLVCSSG 62

Query: 85  GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI-----WSEATMHSRESVA 139
           GN   A + AA+  GIPA IV+P++     V+ +   G +V      W EA +      A
Sbjct: 63  GNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEANLR-----A 117

Query: 140 SKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQV--PLLDTIIVPISGGGLISGVALAA 197
            ++ +  G   V P++   I  G  ++  E    +  P    ++    GG L   VA   
Sbjct: 118 QELAKRDGWENVPPFDHPLIWKGHASLVQELKAVLRTPPGALVLAVGGGGLLAGVVAGLL 177

Query: 198 KSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRDLVD 256
           +     + I+A E  GA+    +  AG+++TL +  +VA  L A  +       ++    
Sbjct: 178 EVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQVCKI 237

Query: 257 DVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK----NPAWQDSKKIGIV 312
               VED E + A++   +  ++ VEP+    LAA+ S   R+             + ++
Sbjct: 238 HSEVVEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQAEGCLPPSLTSVVVI 297

Query: 313 LSGGN 317
           + GGN
Sbjct: 298 VCGGN 302

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum} Length = 366

 Score =  286 bits (733), Expect = 3e-95
 Identities = 96/312 (30%), Positives = 159/312 (50%), Gaps = 14/312 (4%)

Query: 18  AQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK 77
               +     ++P+  +E L+   G + + K E  Q+  +FK RGA N + +L  ++  K
Sbjct: 50  LASPVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDK 109

Query: 78  GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI-----WSEATM 132
           GV+T S+GNHA  ++LA +     A IV+P   P+ K++ V   GG V+     + EA  
Sbjct: 110 GVITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQT 169

Query: 133 HSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISG 192
           H     A ++ E+ G   + P++D  +I GQGTI  E   Q+  +  + +P+ GGGLI+G
Sbjct: 170 H-----ALELSEKDGLKYIPPFDDPGVIKGQGTIGTEINRQLKDIHAVFIPVGGGGLIAG 224

Query: 193 VALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR-AFLGDLTWPIV 251
           VA   K I P  +I+  EP GA     S   G  + L   +T ADG+  A +G+ T+   
Sbjct: 225 VATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKC 284

Query: 252 RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGI 311
           ++L+D ++ V +  I  A+K  Y+  +  +E SGA+ +A   +           ++ I  
Sbjct: 285 QELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYKIK---NENIVA 341

Query: 312 VLSGGNVDLGVL 323
           + SG N+D   L
Sbjct: 342 IASGANMDFSKL 353

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A* Length = 398

 Score =  220 bits (561), Expect = 4e-69
 Identities = 62/356 (17%), Positives = 134/356 (37%), Gaps = 47/356 (13%)

Query: 10  ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSG-RSLFFKCECFQKG-GAFKFRGASNAV 67
           +     ++  ++I+ Y   TP+ + + L ++ G + +  K E  + G  AF   G + A+
Sbjct: 27  SQAKLARQFHQKIAGY-RPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAI 85

Query: 68  LSLDEDQA------------------IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN 109
             L  ++                        T + GNH   ++ AA+  G  A I +PK 
Sbjct: 86  AQLLCEKYHLDIETLSFEHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKG 145

Query: 110 APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYND-------GRIISG 162
           + + +V+ ++  G + I ++        +  +  ++ G  +V              I+ G
Sbjct: 146 SAQERVDAILNLGAECIVTDMNYDDTVRLTMQHAQQHGWEVVQDTAWEGYTKIPTWIMQG 205

Query: 163 QGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSI--KPAIRILAAEPIGAND 216
             T++ E +EQ+         +++    G +  GV      +     +  +  EP  A+ 
Sbjct: 206 YATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEPDKADC 265

Query: 217 AAQSKAAGRIITLL-ETNTVADGLR-AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCY 274
             +S   G I+ +  +  T+  GL       L W I+R+     I+ +D      M++  
Sbjct: 266 IYRSGVKGDIVNVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLG 325

Query: 275 EIL----KVAVEPSGAIGLAAVLSDGFRKNPAW-------QDSKKIGIVLSGGNVD 319
                  ++    SGA+GL  + +  +                  + ++ + G+ D
Sbjct: 326 NPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVISTEGDTD 381

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A Length = 442

 Score =  183 bits (466), Expect = 1e-54
 Identities = 55/328 (16%), Positives = 100/328 (30%), Gaps = 59/328 (17%)

Query: 32  LSSETLNSMSGRSLFFKCECFQKG-GAFKFRGASNAVLSLDEDQAIK------------- 77
           L  E    +SG+ L  K +      G+ K RG    VL+  E  A++             
Sbjct: 91  LEKEYQQPISGQ-LLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKL 149

Query: 78  ------------GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQV 125
                        +   S+GN   ++ + +   G    + +  +A   K   +  +G  V
Sbjct: 150 LSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTV 209

Query: 126 IW-----SEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDT- 179
           +        A    R++       +     +   N   +  G          Q       
Sbjct: 210 VEYEQDYGVAVEEGRKAAQ----SDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRI 265

Query: 180 --------IIVPISGGGLISGVALAAKSI-KPAIRILAAEPIGANDAAQSKAAGRIITL- 229
                   + +P   GG   GVA   K      +    AEP  +         G    + 
Sbjct: 266 VDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQIS 325

Query: 230 -----LETNTVADGL---RAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAV 281
                ++  T ADGL   RA         +  L+D   T+ D+ + + +    +   + +
Sbjct: 326 VQDIGIDNLTAADGLAVGRA--SGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRL 383

Query: 282 EPSGAIGLAAVLSDGFRKNPAWQDSKKI 309
           EPS   G+A         + ++Q     
Sbjct: 384 EPSALAGMAGPQ--RVCASVSYQQMHGF 409

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis} Length = 360

 Score =  124 bits (313), Expect = 5e-33
 Identities = 64/293 (21%), Positives = 116/293 (39%), Gaps = 24/293 (8%)

Query: 15  IKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ 74
           + +    ++L    TP++++  L+  +G ++  K E     G+FK RG + AV       
Sbjct: 25  VGDDWTPVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALA-H 83

Query: 75  AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEATMH 133
             + V+  S+GN +A+ +  A   GI   ++IP+      K+   V +G ++I  +    
Sbjct: 84  GQRAVLCASTGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFD 143

Query: 134 SRESVASKVLEETGAV-LVHPYNDGRIISGQGTISLEFLEQ---VPLLDTIIVPISGGGL 189
               +A K+  +   + LV+  N  R I GQ T + E ++     P  D   +P+   G 
Sbjct: 144 DCLELARKMAADFPTISLVNSVNPVR-IEGQKTAAFEIVDVLGTAP--DVHALPVGNAGN 200

Query: 190 ISGVA------LAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLR--- 240
           I+              I    R+L  +  GA      +            T+A  +R   
Sbjct: 201 ITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLVLGEPVSH------PETIATAIRIGS 254

Query: 241 AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVL 293
                      +      +   D+EI+ A  L   +  V VEP+ A  +A +L
Sbjct: 255 PASWTSAVEAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLL 307

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A Length = 351

 Score =  122 bits (308), Expect = 3e-32
 Identities = 70/296 (23%), Positives = 117/296 (39%), Gaps = 29/296 (9%)

Query: 15  IKEAQKRISLYIHKTPVLSSET--LNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDE 72
           + E    ISL    TP++  +        G  L+ K E     G+FK RG + AV    E
Sbjct: 15  VSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVE 74

Query: 73  DQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT 131
               + V   S+GN AA+ +  A   GI A +V+P       KV   + +G +++  E  
Sbjct: 75  -GGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGN 133

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQ---VPLLDTIIVPISGGG 188
                 +  K+ E     LV+  N  R + GQ T++ E +++    P      +P+   G
Sbjct: 134 FDDALRLTQKLTEAFPVALVNSVNPHR-LEGQKTLAFEVVDELGDAP--HYHALPVGNAG 190

Query: 189 LISGVA------LAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF 242
            I+          A    K   R+L  +  GA      +   R        T+A  +R  
Sbjct: 191 NITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVER------PETLATAIR-- 242

Query: 243 LGD-LTWPIVRDLVDD----VITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVL 293
           +G+  +W       ++    +  V D+EI+ A +       +  EP+ A  +A V 
Sbjct: 243 IGNPASWQGAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVF 298

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus} Length = 352

 Score =  120 bits (303), Expect = 1e-31
 Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 35/299 (11%)

Query: 15  IKEAQKRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDE 72
           + E    ++LY   TP++ ++ L    G    ++ K E     G+FK RG + A+    E
Sbjct: 17  VDENTPIVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVE 76

Query: 73  DQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK-CKVENVVRYGGQVIWSEAT 131
               + V+  S+GN +A+ +  A   G+ AY+++PK A    K+   + YG +V+  + T
Sbjct: 77  -AGKRAVICASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGT 135

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQ---VPLLDTIIVPISGGG 188
                ++  K+ E     +V+  N  R I GQ T + E  +     P  D   +P+   G
Sbjct: 136 FDDALNIVRKIGENFPVEIVNSVNPYR-IEGQKTAAFEICDTLGEAP--DYHFIPVGNAG 192

Query: 189 LISGVA------LAAKSIKPAIRILAAEPIGAN---DAAQSKAAGRIITLLETNTVADGL 239
            I+              I    R++  +  GA         K            T+A  +
Sbjct: 193 NITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIVKGYPIKNP---------QTIATAI 243

Query: 240 RAFLGD-LTWPIVRDLVDD----VITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVL 293
           +  +G+  +W        +    +  V D EI+ A KL      V  EP+ A  +A ++
Sbjct: 244 K--IGNPYSWKSALKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLI 300

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A* Length = 486

 Score =  122 bits (307), Expect = 2e-31
 Identities = 58/314 (18%), Positives = 110/314 (35%), Gaps = 36/314 (11%)

Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGAS 64
                     +    +S +   + +  +E           L+ K       G+FK  G +
Sbjct: 109 SKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMT 168

Query: 65  NAVLSLDE----DQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK-CKVENVV 119
             V  ++      + + GV   S+G+ +AALS      GIP+ + +P N     ++   +
Sbjct: 169 VLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPI 228

Query: 120 RYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQ----VP 175
             G  V+  +        +  ++  E    L +  N  R + GQ T ++E L+Q    VP
Sbjct: 229 ANGAFVLSIDTDFDGCMKLIREITAELPIYLANSLNSLR-LEGQKTAAIEILQQFDWQVP 287

Query: 176 LLDTIIVPISGGGLISGVALAAKSIK--------PAIRILAAEPIGAN--DAAQSKAAGR 225
             D +IVP    G I       K  +        P  R++ A+   AN            
Sbjct: 288 --DWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIP--RMVCAQAANANPLYLHYKSGWKD 343

Query: 226 IITLLETNTVADGLR---AFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILK---V 279
              +  + T A  ++       D     ++     V    ++E+++AM           +
Sbjct: 344 FKPMTASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQ----ADSTGM 399

Query: 280 AVEPSGAIGLAAVL 293
            + P   + L A+ 
Sbjct: 400 FICPHTGVALTALF 413

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A* Length = 342

 Score = 70.1 bits (171), Expect = 9e-14
 Identities = 52/318 (16%), Positives = 108/318 (33%), Gaps = 33/318 (10%)

Query: 21  RISLYIHKTPVLSSETLNSMSGRSLFFK---CECFQKGGAFKFRGASNAVLSLDEDQAIK 77
           R+      TP+     L+   GR ++ K         GG  K R     V     + A  
Sbjct: 25  RLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGG-NKLRKLEFLVADALREGA-D 82

Query: 78  GVVT--HSSGNHAAALSLAAKLRGIPAYIVIPKNAP--------KCKVENVVRYGGQVIW 127
            ++T      NH    +  A   G+    ++                   +  +  Q+  
Sbjct: 83  TLITAGAIQSNHVRQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEM 142

Query: 128 SEATMHSR---ESVASKVLEETGAVLVHPYNDGRIISGQG--TISLEFLEQV---PLLDT 179
            +A        +++A+++  +     V P      +   G    +LE  +Q      L +
Sbjct: 143 CDALTDPDAQLQTLATRIEAQGFRPYVIPVGGSSALGAMGYVESALEIAQQCEEVVGLSS 202

Query: 180 IIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGL 239
           ++V     G  +G+A+  + + P + ++      +      +   ++I L +      G 
Sbjct: 203 VVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVA----EQKPKVIALQQA---IAGQ 255

Query: 240 RAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFR 298
            A        +  D       V +   +EA+KL   +  V ++P      +A ++ DG  
Sbjct: 256 LALTATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLI-DGIS 314

Query: 299 KNPAWQDSKKIGIVLSGG 316
           +   + D   I  + +GG
Sbjct: 315 QKR-FNDDGPILFIHTGG 331

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A* Length = 325

 Score = 55.8 bits (134), Expect = 5e-09
 Identities = 48/277 (17%), Positives = 89/277 (32%), Gaps = 24/277 (8%)

Query: 21  RISLYIHKTPVLSSETLNSMSGRSLFFK---CECFQKGGAFKFRGASNAVLSLDEDQAIK 77
           R+ L   +TP+     ++   G  ++ K         GG  K R     +L     +   
Sbjct: 14  RVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGG-NKIRKLEY-LLGDALSKGAD 71

Query: 78  GVVTH--SSGNHAAALSLAAKLRGIPAYIVIPKNAPKC---KVENVVRYGGQVIWSEATM 132
            V+T      NHA    LAAK  G+ A +V+           ++ ++    +V  ++ + 
Sbjct: 72  VVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSF 131

Query: 133 HSRESVASKV--LEETGAVLVHPYNDGRIIS---GQGTISLEFLEQVPL-LDTIIVPISG 186
              +        L+  G         G       G      E   Q  +  D+I+V    
Sbjct: 132 ELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFDSIVVAAGS 191

Query: 187 GGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDL 246
           GG ++G++L    +   IR +        +   SK    I    E   V           
Sbjct: 192 GGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGV--------KVE 243

Query: 247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEP 283
             P + D           E+ + ++       + ++P
Sbjct: 244 VRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDP 280

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A* Length = 435

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 64/255 (25%), Positives = 106/255 (41%), Gaps = 23/255 (9%)

Query: 26  IHKTPVLSSETLNSMSGRS--LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK-G--VV 80
           I  TP++    +    G    L  KCE F  GG+ K R +   +   + D  +K G  ++
Sbjct: 106 IGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTII 165

Query: 81  THSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT-----MHSR 135
             +SGN    L+LAA +RG    IV+P+     KV+ +   G +++ +          S 
Sbjct: 166 EPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESH 225

Query: 136 ESVASKVLEET-GAVLVHPY-NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISG 192
             VA ++  E   + ++  Y N    ++   T + E L+Q    LD ++  +  GG I+G
Sbjct: 226 VGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITG 285

Query: 193 VALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV- 251
           +A   K   P  RI+  +P G+  A   +      T  E   +             P V 
Sbjct: 286 IARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDF--------IPTVL 337

Query: 252 -RDLVDDVITVEDKE 265
            R +VD      D+E
Sbjct: 338 DRTVVDKWFKSNDEE 352

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 57/255 (22%), Positives = 104/255 (40%), Gaps = 23/255 (9%)

Query: 26  IHKTPVLSSETLNSMSGRS--LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK-G--VV 80
           I  TP++    + +  G    ++ KCE    GG+ K R     V   +E   +K G  ++
Sbjct: 58  IGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTII 117

Query: 81  THSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT-----MHSR 135
             +SGN    L++A  ++G    IV+P+     KV  +   G ++I +            
Sbjct: 118 EPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGL 177

Query: 136 ESVASKVLEET-GAVLVHPY-NDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISG 192
             VA ++  ET  ++++  Y N G  ++     + E L Q+   +D I+V     G ISG
Sbjct: 178 IYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISG 237

Query: 193 VALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV- 251
           +    K   P+ +I+  +P G+  A  ++     +   E   +             P V 
Sbjct: 238 IGRKIKEQVPSCQIVGVDPYGSILARPAELNKTDVQFYEVEGIGYDF--------PPTVF 289

Query: 252 -RDLVDDVITVEDKE 265
              +VD    + D +
Sbjct: 290 DDTVVDVWTKIGDSD 304

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 51/329 (15%), Positives = 103/329 (31%), Gaps = 75/329 (22%)

Query: 1   MEANGEKYAANF--SSIKEAQKRISLYIHKTPVLSSETL-------NSMSG-RSLFFKCE 50
           +    + +  NF    +++  K          +LS E +       +++SG   LF+   
Sbjct: 22  LSVFEDAFVDNFDCKDVQDMPK---------SILSKEEIDHIIMSKDAVSGTLRLFWTLL 72

Query: 51  CFQKGGAFKFRGASNAVLSLDED---QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIP 107
             Q+    KF      VL ++       IK      S      +    +L       V  
Sbjct: 73  SKQEEMVQKFVEE---VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ--VFA 127

Query: 108 KNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTIS 167
           K        NV R                    + L     VL+     G + SG+  ++
Sbjct: 128 KY-------NVSR--------LQPYLKLRQALLE-LRPAKNVLID----GVLGSGKTWVA 167

Query: 168 LEFLEQVPLLDTIIVPISGGGL--IS-GVALAAKSIKPAIRILAA--EPIGANDAAQSKA 222
           L+    V  L   +       +  ++     + +++   + +L      I  N  ++S  
Sbjct: 168 LD----V-CLSYKVQCKMDFKIFWLNLKNCNSPETV---LEMLQKLLYQIDPNWTSRSDH 219

Query: 223 AGRIITLLETNTVADGLRAFLGDLTWPIVRDLV--DDVITVEDKEIIEAMKL-CYEILKV 279
           +  I   L  +++   LR  L   + P    L+   +   V++ +   A  L C    K+
Sbjct: 220 SSNIK--LRIHSIQAELRRLL--KSKPYENCLLVLLN---VQNAKAWNAFNLSC----KI 268

Query: 280 AVEPSGAIGLAAVLSDGFRKNPAWQDSKK 308
            +  +    +   LS     + +      
Sbjct: 269 LLT-TRFKQVTDFLSAATTTHISLDHHSM 296

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A* Length = 338

 Score = 42.5 bits (100), Expect = 1e-04
 Identities = 47/324 (14%), Positives = 97/324 (29%), Gaps = 36/324 (11%)

Query: 21  RISLYIHKTPVLSSETLNSMSGR--SLFFKCECFQKGGAF---KFRGASNAVLSLDEDQA 75
           R  L    TP+     L+   G    L+ K E    G AF   K R     +        
Sbjct: 8   RYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGC 67

Query: 76  IKGVVTHSSG--NHAAALSLAAKLRGIPAYIVIP-----KNAPKCKVENV-----VRYGG 123
              +V+      N    ++  A   G+   +V        +A   +V N+     +    
Sbjct: 68  -DTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADV 126

Query: 124 QVIWSEATMHSR---ESVASKVLEETGAVLV-------HPYNDGRIISGQGTISLEFLEQ 173
           +++     +  R   E     V    G           HP      +     +  +  E 
Sbjct: 127 RLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAEL 186

Query: 174 VPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETN 233
               D ++V    G   +G+ +   +   A R++  +        + +       +    
Sbjct: 187 GFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQIT----RIARQT 242

Query: 234 TVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEP--SGAIGLAA 291
               GL   +      +          + ++  +EA++LC     +  +P   G   +  
Sbjct: 243 AEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGK-SMHG 301

Query: 292 VLSDGFRKNPAWQDSKKIGIVLSG 315
           ++ +  R     + S+ +   L G
Sbjct: 302 MI-EMVRNGEFPEGSRVLYAHLGG 324

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A* Length = 303

 Score = 39.8 bits (94), Expect = 6e-04
 Identities = 55/287 (19%), Positives = 101/287 (35%), Gaps = 85/287 (29%)

Query: 22  ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK---G 78
           +   I  TP++  + +   +G  ++ K E     G+ K R A + ++  ++   IK    
Sbjct: 4   LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDV 63

Query: 79  VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVE--NVVR-YGGQVIWSEAT--MH 133
           ++  +SGN   AL++ A L+G    +++P N      E    +R YG ++I       M 
Sbjct: 64  LIEATSGNTGIALAMIAALKGYRMKLLMPDNM---SQERRAAMRAYGAELILVTKEQGME 120

Query: 134 SRESVASKVLEETGAVLVH----PYN----------------DGRI---ISGQGTISLEF 170
               +A ++       L+     P N                 GRI   +S  GT     
Sbjct: 121 GARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGT----- 175

Query: 171 LEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLL 230
                            G I+GV+   +     + I+  +P            G  I   
Sbjct: 176 ----------------TGTITGVSRFMREQSKPVTIVGLQP----------EEGSSIP-- 207

Query: 231 ETNTVADGLR----AFLGDLTWPIV--RDLVDDVITVEDKEIIEAMK 271
                  G+R     +L     P +    LVD+V+ +  ++    M+
Sbjct: 208 -------GIRRWPTEYL-----PGIFNASLVDEVLDIHQRDAENTMR 242

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A* 3dwi_A* Length = 325

 Score = 39.9 bits (94), Expect = 7e-04
 Identities = 49/291 (16%), Positives = 97/291 (33%), Gaps = 82/291 (28%)

Query: 20  KRISLYIHKTPV-----LSSETLNSMSGRS--LFFKCECFQKGGAFKFRGASNAVLSLDE 72
             +   +  TP+     LS    +   G    L+ K E     G+ K R A   +   + 
Sbjct: 7   DSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEA 66

Query: 73  DQAIK---GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVE--NVVR-YGGQVI 126
           D  ++    ++  +SGN   +L++AA+L+G     V+P+N     VE   ++  YG Q+I
Sbjct: 67  DGLLRPGATILEPTSGNTGISLAMAARLKGYRLICVMPENT---SVERRQLLELYGAQII 123

Query: 127 WSEATMHSRESV--ASKVLEETGAVLVHPYNDGRIISGQ-----------GTISLEFLEQ 173
           +S A   S  +V  A ++                ++  Q                E L  
Sbjct: 124 FSAAEGGSNTAVATAKELAATN---------PSWVMLYQYGNPANTDSHYCGTGPELLAD 174

Query: 174 VPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEP-----------IGANDAAQSKA 222
           +P +   +  +   G + G     +     ++I+AAEP           +          
Sbjct: 175 LPEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVYALRNMDEG------- 227

Query: 223 AGRIITLLETNTVADGLRAFLGDLTWPIV--RDLVDDVITVEDKEIIEAMK 271
                              F+     P +   +++    +V   + +   +
Sbjct: 228 -------------------FV-----PELYDPEILTARYSVGAVDAVRRTR 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
3l6b_A	346	Serine racemase; pyridoxal phosphate, PLP, isomera	100.0
2gn0_A	342	Threonine dehydratase catabolic; TDCB, biodegradat	100.0
1v71_A	323	Serine racemase, hypothetical protein C320.14 in c	100.0
3iau_A	366	Threonine deaminase; pyridoxal phosphate, amino-ac	100.0
1ve5_A	311	Threonine deaminase; riken structural genomics/Pro	100.0
1tdj_A	514	Biosynthetic threonine deaminase; allostery, coope	100.0
4h27_A	364	L-serine dehydratase/L-threonine deaminase; PLP de	100.0
1p5j_A	372	L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo	100.0
2rkb_A	318	Serine dehydratase-like; PLP bound enzyme, enzyme	100.0
4d9i_A	398	Diaminopropionate ammonia-lyase; fold type II PLP-	100.0
3tbh_A	334	O-acetyl serine sulfhydrylase; cysteine synthase,	100.0
3ss7_X	442	D-serine dehydratase; type II fold, ALFA,beta-elim	100.0
3vc3_A	344	Beta-cyanoalnine synthase; beta-cyanoalanine synth	100.0
3dwg_A	325	Cysteine synthase B; sulfur carrier protein comple	100.0
2zsj_A	352	Threonine synthase; PLP dependent enzyme, lyase; H	100.0
1y7l_A	316	O-acetylserine sulfhydrylase, O-acetylserine (thio	100.0
3aey_A	351	Threonine synthase; PLP, pyridoxal phosphate, lyas	100.0
2d1f_A	360	Threonine synthase; amino acid synthesis, pyridoxa	100.0
1ve1_A	304	O-acetylserine sulfhydrylase; PLP, transferase, ri	100.0
4aec_A	430	Cysteine synthase, mitochondrial; lyase, cysteine	100.0
2v03_A	303	Cysteine synthase B; pyridoxal phosphate, cysteine	100.0
1z7w_A	322	Cysteine synthase; transferase; HET: PLP; 2.20A {A	100.0
2q3b_A	313	Cysteine synthase A; pyridoxal-5'-phosphate, sulph	100.0
1o58_A	303	O-acetylserine sulfhydrylase; TM0665, structural g	100.0
2egu_A	308	Cysteine synthase; O-acetylserine sulfhydrase, str	100.0
2pqm_A	343	Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.8	100.0
4d9b_A	342	D-cysteine desulfhydrase; fold type II PLP-depende	100.0
1e5x_A	486	Threonine synthase; threonine biosynthesis, PLP en	100.0
1f2d_A	341	1-aminocyclopropane-1-carboxylate deaminase; carbo	100.0
1j0a_A	325	1-aminocyclopropane-1-carboxylate deaminase; PLP d	100.0
1x1q_A	418	Tryptophan synthase beta chain; structural genomic	100.0
1tzj_A	338	ACC deaminase, 1-aminocyclopropane-1-carboxylate d	100.0
1jbq_A	435	B, cystathionine beta-synthase, serine sulfhydrase	100.0
1v8z_A	388	Tryptophan synthase beta chain 1; beta+alpha, rike	100.0
1qop_B	396	Tryptophan synthase beta chain; lyase, carbon-oxyg	100.0
1wkv_A	389	Cysteine synthase; homodimer, open alpha/beta fold	100.0
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	100.0
2o2e_A	422	Tryptophan synthase beta chain; amino-acid biosynt	100.0
1vb3_A	428	Threonine synthase; PLP-dependent enzyme, lyase; H	100.0
4f4f_A	468	Threonine synthase; structural genomics, niaid, na	100.0
1kl7_A	514	Threonine synthase; threonine synthesis, pyridoxal	100.0
3v7n_A	487	Threonine synthase; ssgcid, structural genomics, s	100.0
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	94.51
3c85_A	183	Putative glutathione-regulated potassium-efflux S	91.31
1vp8_A	201	Hypothetical protein AF0103; putative pyruvate kin	89.66
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.51
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	85.37
3egc_A	291	Putative ribose operon repressor; structural genom	84.59
3o74_A	272	Fructose transport system repressor FRUR; dual tra	82.89
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	81.41

>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*

Probab=100.00  E-value=1.5e-69  Score=502.57  Aligned_cols=319  Identities=49%  Similarity=0.810  Sum_probs=294.3

Q ss_pred             CCCCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchh---ccCCeEEEEC
Q 020236            7 KYAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDED---QAIKGVVTHS   83 (329)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~---~~~~~vv~~s   83 (329)
                      .++++++|+.++++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++   .+.++||++|
T Consensus         4 ~~~~~~~~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~~S   83 (346)
T 3l6b_A            4 QYDISFADVEKAHINIRDSIHLTPVLTSSILNQLTGRNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTHS   83 (346)
T ss_dssp             CCSSCHHHHHHHHHHHGGGSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHHTTC-----CCCSCEEEEC
T ss_pred             ccCCCHHHHHHHHHHHhcccCCCCeEEchhhHHHhCCeEEEEeCCCCCCCCcHHHHHHHHHHHHHHhccccCCCEEEEeC
Confidence            4578999999999999999999999999999999999999999999999999999999999998764   2567899999


Q ss_pred             CchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCccccccc
Q 020236           84 SGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQ  163 (329)
Q Consensus        84 sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~  163 (329)
                      +||||+|+|++|+++|++|+||||++++..|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||..++||
T Consensus        84 sGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~a~~l~~~~~~~~i~~~~np~~~~g~  163 (346)
T 3l6b_A           84 SGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPSDESRENVAKRVTEETEGIMVHPNQEPAVIAGQ  163 (346)
T ss_dssp             SSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHTCEECCSSSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEEECCCCChHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             CcchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccccccC
Q 020236          164 GTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADGLRAF  242 (329)
Q Consensus       164 ~t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~gl~~~  242 (329)
                      .|+++||++|++.||+||+|+||||+++|++.++|+.+|++++|+|||.+++++++++..|++...+ ...|+++|+...
T Consensus       164 ~t~~~Ei~~q~~~~d~vvv~vG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~  243 (346)
T 3l6b_A          164 GTIALEVLNQVPLVDALVVPVGGGGMLAGIAITVKALKPSVKVYAAEPSNADDCYQSKLKGKLMPNLYPPETIADGVKSS  243 (346)
T ss_dssp             HHHHHHHHHHSTTCCEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCSC
T ss_pred             HHHHHHHHHhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCCHHHHHHHHcCCccccCCCCCchhhhccCC
Confidence            9999999999999999999999999999999999999999999999999999999999999876654 468999999866


Q ss_pred             CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHH
Q 020236          243 LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGV  322 (329)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~  322 (329)
                      ++...|+++++++|+++.|+|+|+.++++++++++|+++||+||++++|+++..  .++...++++||+++|||++|++.
T Consensus       244 ~g~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~~--~~~~~~~~~~Vv~i~sGG~~d~~~  321 (346)
T 3l6b_A          244 IGLNTWPIIRDLVDDIFTVTEDEIKCATQLVWERMKLLIEPTAGVGVAAVLSQH--FQTVSPEVKNICIVLSGGNVDLTS  321 (346)
T ss_dssp             CCTTHHHHHHHHCCEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHSGG--GGGSCTTCCEEEEEECBCCCCTTG
T ss_pred             CcHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHHCCcEEcHHHHHHHHHHHHhh--hhhccCCCCeEEEEcCCCCCCHHH
Confidence            788899999999999999999999999999999999999999999999998762  222234689999999999999999


Q ss_pred             -HHHhh
Q 020236          323 -LWDSF  327 (329)
Q Consensus       323 -~~~~~  327 (329)
                       +..++
T Consensus       322 ~~~~~~  327 (346)
T 3l6b_A          322 SITWVK  327 (346)
T ss_dssp             GGTTCC
T ss_pred             HHHHHH
Confidence             65443

>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III; dimer, PLP, isomerase; HET: PLP; 1.70A {Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A* 2zpu_A* 2zr8_A*

Probab=100.00  E-value=2.8e-68  Score=490.43  Aligned_cols=316  Identities=41%  Similarity=0.689  Sum_probs=293.9

Q ss_pred             CCCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchH
Q 020236            8 YAANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH   87 (329)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~   87 (329)
                      .+++++++.++++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.++.+.++||++|+|||
T Consensus         6 ~~~~~~~i~~a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~KdRga~~~i~~~~~~~~~~~vv~~ssGN~   85 (323)
T 1v71_A            6 VLPTYDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNH   85 (323)
T ss_dssp             CCCCHHHHHHHHHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHHHCEEECCSSHH
T ss_pred             CCCCHHHHHHHHHHHhccCCCCCceEhHhhHHHhCCeEEEEecCCCCcCCHHHHHHHHHHHHHHHhcCCCeEEEeCCCcH
Confidence            34789999999999999999999999999998889999999999999999999999999998765555678999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcch
Q 020236           88 AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTIS  167 (329)
Q Consensus        88 g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~  167 (329)
                      |+|+|++|+.+|++|++|||++.+..|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++||.|++
T Consensus        86 g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~l~~~~~~~~i~~~~n~~~~~g~~t~~  165 (323)
T 1v71_A           86 AQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAA  165 (323)
T ss_dssp             HHHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTTTTCHHHHHHHHHHHHTCBCCCSSSSHHHHHHHTHHH
T ss_pred             HHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCEecCCCCCcchhhhHhHHH
Confidence            99999999999999999999999999999999999999999998888888999998888899999999999999999999


Q ss_pred             HHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcc
Q 020236          168 LEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDL  246 (329)
Q Consensus       168 ~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~  246 (329)
                      +||++|++++|+||+|+|||||++|++.++|+.+|+++||+|||.+++++++++..|+....+...++++|++.. ++..
T Consensus       166 ~Ei~~q~~~~d~vv~~vG~GGt~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~  245 (323)
T 1v71_A          166 KELFEEVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNY  245 (323)
T ss_dssp             HHHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHH
T ss_pred             HHHHHhcCCCCEEEEecCCcHHHHHHHHHHHHcCCCCEEEEEEeCCCchHHHHHHcCCceecCCCCcccccccCCCCcHH
Confidence            999999999999999999999999999999999999999999999999999999999876666678999999875 5566


Q ss_pred             cHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHh
Q 020236          247 TWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDS  326 (329)
Q Consensus       247 ~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~  326 (329)
                      .|+++++++|+++.|+|+|++++++++++++|+++||++|++++|+++.  .++  + ++++||+|+|||+.|++.+.++
T Consensus       246 ~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~eps~a~alaa~~~~--~~~--~-~~~~vv~i~tGg~~~~~~~~~~  320 (323)
T 1v71_A          246 TFSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAM--KEK--L-KNKRIGIIISGGNVDIERYAHF  320 (323)
T ss_dssp             HHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHHHHHHHHT--GGG--G-TTCEEEEEECBCCCCHHHHHHH
T ss_pred             HHHHHHHhCCEEEEECHHHHHHHHHHHHHhcCeEEcHHHHHHHHHHHHh--HHh--c-CCCeEEEEeCCCCCCHHHHHHH
Confidence            7888899999999999999999999999999999999999999999987  332  3 6899999999999999999988


Q ss_pred             hh
Q 020236          327 FR  328 (329)
Q Consensus       327 ~~  328 (329)
                      ++
T Consensus       321 ~~  322 (323)
T 1v71_A          321 LS  322 (323)
T ss_dssp             HT
T ss_pred             Hh
Confidence            75

>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis, defensive PROT jasmonic acid pathway, jasmonic acid,structural genomics; HET: LLP 15P; 2.35A {Solanum lycopersicum}

Probab=100.00  E-value=1.1e-66  Score=486.95  Aligned_cols=306  Identities=30%  Similarity=0.463  Sum_probs=287.2

Q ss_pred             HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI  100 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~  100 (329)
                      ++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++++.++|+++||||||+|+|++|+++|+
T Consensus        53 ~i~~~i~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfKdRga~~~i~~l~~~~~~~~vv~assGN~g~a~A~aa~~~G~  132 (366)
T 3iau_A           53 PVYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVITASAGNHAQGVALAGQRLNC  132 (366)
T ss_dssp             CGGGTCCCCCEEECHHHHHHHTSEEEEEEGGGSTTSBTTHHHHHHHHHTSCHHHHHHCEEEECSSHHHHHHHHHHHHTTC
T ss_pred             HHhhhcCCCCcEEhhhhhHhhCCEEEEEecCCCCCcchHHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHhCC
Confidence            55688999999999999999999999999999999999999999999988766666789999999999999999999999


Q ss_pred             CEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCCCCCEE
Q 020236          101 PAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTI  180 (329)
Q Consensus       101 ~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~v  180 (329)
                      +|++|+|++.+..|+++++.+||+|+.++++++++.+.+++++++.+++|++||+|++++.||.|++.||++|++.||+|
T Consensus       133 ~~~iv~P~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~a~~~~~~~~~~~i~~~~n~~~i~g~~t~~~Ei~~q~~~~d~v  212 (366)
T 3iau_A          133 VAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTHALELSEKDGLKYIPPFDDPGVIKGQGTIGTEINRQLKDIHAV  212 (366)
T ss_dssp             CEEEEECTTCCHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHHHHTCEECCSSSSHHHHHHHHHHHHHHHHHCCSEEEE
T ss_pred             ceEEEeCCCCCHHHHHHHHHCCCeEEEECcCHHHHHHHHHHHHHhcCCEecCCCCChHHHHHHHHHHHHHHHhcCCCCEE
Confidence            99999999999999999999999999999999999999999999899999999999999999999999999999889999


Q ss_pred             EEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcEE
Q 020236          181 IVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDVI  259 (329)
Q Consensus       181 v~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~  259 (329)
                      |+|+|+||+++|++.++|+++|.+++++|+|.+++++++++..|+....+...++++|++.+ ++...|+++++++|+++
T Consensus       213 vvpvG~GG~~~Gi~~~~k~~~~~~~vigVe~~~~~~l~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~~~~~~~~~~~  292 (366)
T 3iau_A          213 FIPVGGGGLIAGVATFFKQIAPNTKIIGVEPYGAASMTLSLHEGHRVKLSNVDTFADGVAVALVGEYTFAKCQELIDGMV  292 (366)
T ss_dssp             EEECSSSHHHHHHHHHHHHHSTTSEEEEEEEGGGCHHHHHHHHTSCCEESCCCCSSGGGCCSSCCHHHHHHHHHHCCEEE
T ss_pred             EEccCchHHHHHHHHHHHHhCCCCeEEEEeecCChHHHHHHHcCCCCcCCCccchhhhhcCCCCcHHHHHHHHhcCCCce
Confidence            99999999999999999999999999999999999999999999988777888999999875 67778999999999999


Q ss_pred             EeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhhC
Q 020236          260 TVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK  329 (329)
Q Consensus       260 ~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~~  329 (329)
                      .|+|+|+.++++++++++|+++||+||++++|++++  .+++.+ ++++||+++|||+.|++.+.+++++
T Consensus       293 ~v~d~e~~~a~~~l~~~~gi~~ep~sa~alaa~~~~--~~~~~~-~g~~Vv~i~tGgn~d~~~l~~~~~~  359 (366)
T 3iau_A          293 LVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAY--CEFYKI-KNENIVAIASGANMDFSKLHKVTEL  359 (366)
T ss_dssp             EECHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHH--HHHTTC-CSCEEEEEECBCCCCGGGHHHHHHH
T ss_pred             eECHHHHHHHHHHHHHHcCcEEcHHHHHHHHHHHHH--HHhcCC-CCCeEEEEeCCCCCCHHHHHHHHHh
Confidence            999999999999999999999999999999999987  444444 4789999999999999999998764

>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative, RSGI, structural genomics, lyase; HET: PLP; 2.15A {Thermus thermophilus} SCOP: c.79.1.1

Probab=100.00  E-value=1.7e-66  Score=476.41  Aligned_cols=303  Identities=40%  Similarity=0.678  Sum_probs=281.3

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA   89 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~   89 (329)
                      ++++++.++++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.   +.++||++|+||||+
T Consensus         2 ~~~~~i~~a~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~i~~l~---~~~~vv~~ssGN~g~   78 (311)
T 1ve5_A            2 PSLQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE---NPKGLLAVSSGNHAQ   78 (311)
T ss_dssp             CCHHHHHHHHHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSS---SCCCEEEECSSHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCCCceechhhHHhhCCeEEEEecCCCCcCCcHHHHHHHHHHHhc---CCCeEEEECCCcHHH
Confidence            68999999999999999999999999999888999999999999999999999999999885   567899999999999


Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236           90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE  169 (329)
Q Consensus        90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E  169 (329)
                      |+|++|+++|++|++|||++++..|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++||.|+++|
T Consensus        79 alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E  158 (311)
T 1ve5_A           79 GVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEETGYALIHPFDDPLVIAGQGTAGLE  158 (311)
T ss_dssp             HHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTCCTTTHHHHHHHHHHHHCCEECCSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcEecCCCCCcchhhhccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888899999999999999999999999


Q ss_pred             HHhhC----CCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccccccC-C
Q 020236          170 FLEQV----PLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADGLRAF-L  243 (329)
Q Consensus       170 i~~ql----~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~gl~~~-~  243 (329)
                      |++|+    .+||+||+|+||||+++|++.++|+.+|.+|+|+|||.+++++++++..|+..+.+ ...++++|+..+ +
T Consensus       159 i~~q~~~~~~~~d~vvvpvG~Gg~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~~~~~g~~~~~~~~~~~i~~gl~~~~~  238 (311)
T 1ve5_A          159 LLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSL  238 (311)
T ss_dssp             HHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSC
T ss_pred             HHHHHHhcCCCCCEEEEccCchHHHHHHHHHHHHhCCCCEEEEEEeCCChHHHHHHHcCCccccCCCCCeeeCcCCCCCc
Confidence            99999    57999999999999999999999999999999999999999999999999876655 578999999875 5


Q ss_pred             CcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChH
Q 020236          244 GDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLG  321 (329)
Q Consensus       244 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~  321 (329)
                      +...|++++++.|+++.|+|+|++++++++++++|+++||+||++++|+++.  .++   . +++||+|+|||+.|++
T Consensus       239 ~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~--~~~---~-~~~vv~i~tgg~~d~~  310 (311)
T 1ve5_A          239 GERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEH--GAR---L-PQTLALLLSGGNRDFS  310 (311)
T ss_dssp             CTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGGGGHHHHHHHHH--GGG---S-CSEEEEEECBCCCCCC
T ss_pred             cHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHhcCceEchHHHHHHHHHHhh--hhc---c-CCEEEEEECCCCCCCC
Confidence            6678888999999999999999999999999999999999999999999987  433   3 7899999999999875

>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2

Probab=100.00  E-value=5.2e-66  Score=495.32  Aligned_cols=314  Identities=31%  Similarity=0.476  Sum_probs=292.5

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA   89 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~   89 (329)
                      .++++|.++  ++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++.+.++||++|+||||+
T Consensus        15 ~~~~~i~~a--~i~~~i~~TPL~~l~~Ls~~~g~~V~lK~E~lqPtgSfKdRgA~n~i~~l~~~~~~~gVV~aSsGNhg~   92 (514)
T 1tdj_A           15 EYLRAVLRA--PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQ   92 (514)
T ss_dssp             HHHHHHHHC--CGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSCSSSCEEEECSSSHH
T ss_pred             chHHHHHHH--hHhcccCCCCcEEchhhHHhhCCeEEEEECCCCCcccHHHHHHHHHHHHHHHhcCCCEEEEECCcHHHH
Confidence            457778777  788999999999999999999999999999999999999999999999886666678899999999999


Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236           90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE  169 (329)
Q Consensus        90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E  169 (329)
                      ++|++|+++|++|+||||+.+|..|+++++.+||+|+.++++++++.+.+++++++.+++|++||+||.+++||+|+++|
T Consensus        93 avA~aa~~lGi~~~IvmP~~~p~~Kv~~~r~~GAeVvlv~~~~dda~~~a~ela~e~g~~~v~pfdnp~~iaGqgTig~E  172 (514)
T 1tdj_A           93 GVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTLALE  172 (514)
T ss_dssp             HHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECCSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHhcCCEeeCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccH
Q 020236          170 FLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTW  248 (329)
Q Consensus       170 i~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~  248 (329)
                      |++|++.+|+||+|+||||+++|++.++|+++|.+|||||||.+++++.+++..|++...+...++++|+... ++...|
T Consensus       173 I~eQl~~~D~vvvpvGgGGliaGia~~lk~~~P~~kVIgVep~~a~~l~~sl~~G~~~~l~~v~tiadGiav~~~g~~~~  252 (514)
T 1tdj_A          173 LLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETF  252 (514)
T ss_dssp             HHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCCHHH
T ss_pred             HHHHCCCCCEEEEccCcHHHHHHHHHHHHHhCCCCEEEEEeccCChhHHHHHhcCCeeecCCccccccchhcCCCChHHH
Confidence            9999988999999999999999999999999999999999999999999999999888777788999999875 777889


Q ss_pred             HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhhh
Q 020236          249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~  328 (329)
                      +++++++|+++.|+|+|+.++++++++++|+++||+||++++|+++.  .+++.+ ++++||+|+|||+.|++.++++.+
T Consensus       253 ~l~~~~vd~~v~Vsd~ei~~ai~~L~~~~givvEPsgA~alAal~~~--~~~~~~-~g~~VV~I~tGgn~d~~~l~~v~~  329 (514)
T 1tdj_A          253 RLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKY--IALHNI-RGERLAHILSGANVNFHGLRYVSE  329 (514)
T ss_dssp             HHHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH--HHHHTC-CSCEEEEECCCCCCCTTHHHHHHH
T ss_pred             HHHHHhCCeEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHH--HHhcCC-CCCeEEEEEeCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999876  433222 678999999999999998887764

>4h27_A L-serine dehydratase/L-threonine deaminase; PLP dependent typeii, PLP binding, liver, lyase; HET: LLP; 1.30A {Homo sapiens} PDB: 1p5j_A* 1pwh_A* 1pwe_A*

Probab=100.00  E-value=1e-64  Score=472.85  Aligned_cols=317  Identities=25%  Similarity=0.356  Sum_probs=279.8

Q ss_pred             CHHHHHH---HHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchH
Q 020236           11 NFSSIKE---AQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNH   87 (329)
Q Consensus        11 ~~~~~~~---~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~   87 (329)
                      +-++++.   .+.+..+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+ .+.++||++|+|||
T Consensus        26 ~~~~l~r~~~~~~~~~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~Rga~~~i~~a~~-~g~~~vv~aSsGN~  104 (364)
T 4h27_A           26 GGQQMGRGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAK-QGCAHFVCSSSGNA  104 (364)
T ss_dssp             ---------------CCSSCCCCEEEEHHHHHHHTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHH-TTCCEEEECCSSHH
T ss_pred             CCcccchhHHhhhhcCCCCCcCCeEEChhhHHHhCCEEEEEeCCCCCCCCHHHHHHHHHHHHHHh-cCCCEEEEeCCChH
Confidence            3444444   3344567889999999999999999999999999999999999999999998854 46689999999999


Q ss_pred             HHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcc
Q 020236           88 AAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTI  166 (329)
Q Consensus        88 g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~  166 (329)
                      |+|+|++|+++|++|+||||++.+..|+++++.+||+|+.++++++++.+.+++++++. +++|++||+||.+++||.|+
T Consensus       105 g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~~~a~~l~~~~~~~~~~~~~~np~~~~G~~t~  184 (364)
T 4h27_A          105 GMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATVKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASI  184 (364)
T ss_dssp             HHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHTTTCEEEEECSSTTHHHHHHHHHHHHSTTEEEECSSCSHHHHHHHTHH
T ss_pred             HHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhCCCeEEeCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999886 89999999999999999999


Q ss_pred             hHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-C
Q 020236          167 SLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-L  243 (329)
Q Consensus       167 ~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~  243 (329)
                      ++||++|++ .||+||+|+|+||+++|++.++|+.+ |++++|+|||.+++++++++..|+....+...+++++|+.+ +
T Consensus       185 ~~Ei~~q~~~~~D~vvvpvG~GG~~aGi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~  264 (364)
T 4h27_A          185 VKELKETLWEKPGAIALSVGGGGLLCGVVQGLQEVGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTV  264 (364)
T ss_dssp             HHHHHHHCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSC
T ss_pred             HHHHHHHhCCCCCEEEEcCCccHHHHHHHHHHHHhCCCCCeEEEEecCCChHHHHHHHCCCcccCCCCCcHHHHhCCCCC
Confidence            999999998 69999999999999999999999886 88999999999999999999999887777788999999875 5


Q ss_pred             CcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccc---cccCCCCCC-CCeEEEEeCCCC-C
Q 020236          244 GDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDG---FRKNPAWQD-SKKIGIVLSGGN-V  318 (329)
Q Consensus       244 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~---~~~~~~~~~-~~~vv~v~tgg~-~  318 (329)
                      ++..|++++++.+..+.|+|+|+++++++|++++|+++||+||++++|++..+   +.+++.+.+ +++||+|+|||+ +
T Consensus       265 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~eps~aaalaa~~~~k~~~l~~~g~~~~~~~~Vv~v~tGG~~~  344 (364)
T 4h27_A          265 GAQALKLFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNI  344 (364)
T ss_dssp             CHHHHHHHTTSCEEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCCEEEEEECBCSSC
T ss_pred             cHHHHHHHHhcCCEEEEECHHHHHHHHHHHHHHCCCeEcccHHHHHHHHHhhhhHHhhhccCcCCCCCeEEEEECCCCCC
Confidence            66788988888889999999999999999999999999999999999997321   244565554 689999999996 9


Q ss_pred             ChHHHHHhhh
Q 020236          319 DLGVLWDSFR  328 (329)
Q Consensus       319 ~~~~~~~~~~  328 (329)
                      |++.+.++.+
T Consensus       345 d~~~l~~~~~  354 (364)
T 4h27_A          345 SLAQLRALKE  354 (364)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999988754

>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP: c.79.1.1 PDB: 1pwh_A* 1pwe_A*

Probab=100.00  E-value=1.6e-64  Score=472.58  Aligned_cols=314  Identities=24%  Similarity=0.349  Sum_probs=280.6

Q ss_pred             HHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHH
Q 020236           14 SIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSL   93 (329)
Q Consensus        14 ~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~   93 (329)
                      ...+.++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++ +.++||++|+||||+|+|+
T Consensus        32 ry~~~~p~~~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptGSfKdRga~~~l~~a~~~-g~~~vv~aSsGN~g~alA~  110 (372)
T 1p5j_A           32 RGSEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQ-GCAHFVCSSAGNAGMAAAY  110 (372)
T ss_dssp             --------CCCSSCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHHT-TCCEEEECCSSHHHHHHHH
T ss_pred             cHHHhcccccCCCCCCCceEcHhhHHHhCCEEEEEEcCCCCCCChHHHHHHHHHHHHHHc-CCCEEEEeCCCHHHHHHHH
Confidence            344566777788999999999999998899999999999999999999999999988554 6789999999999999999


Q ss_pred             HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHH-cCCEeeCCCCCcccccccCcchHHHHh
Q 020236           94 AAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEE-TGAVLVHPYNDGRIISGQGTISLEFLE  172 (329)
Q Consensus        94 ~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~~g~~t~~~Ei~~  172 (329)
                      +|+.+|++|+||||+++++.|+++++.+||+|+.++++++++.+.+++++++ ++++|++||+||.+++||.|+++||++
T Consensus       111 aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~a~~~a~~l~~~~~~~~~v~~~~n~~~~~G~~t~~~Ei~~  190 (372)
T 1p5j_A          111 AARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKE  190 (372)
T ss_dssp             HHHHHTCCEEEEECTTCCHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHSTTEEECCSSCCHHHHHHHTHHHHHHHH
T ss_pred             HHHHcCCcEEEEECCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCCcEEeCCCCCHHHHhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988 689999999999999999999999999


Q ss_pred             hCC-CCCEEEEeCCCChHHHHHHHHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHH
Q 020236          173 QVP-LLDTIIVPISGGGLISGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWP  249 (329)
Q Consensus       173 ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~  249 (329)
                      |++ .||+||+|+|+||+++|++.++|+.+ |.++||+|||.+++++.+++..|++...+...++++||+.+ +++..|+
T Consensus       191 ql~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~p~~~vigVe~~~~~~~~~~~~~g~~~~~~~~~tia~gl~~~~~~~~~~~  270 (372)
T 1p5j_A          191 TLWEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALK  270 (372)
T ss_dssp             HCSSCCSEEEEECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHH
T ss_pred             HcCCCCCEEEEecCCchHHHHHHHHHHHhCCCCceEEEEecCCChHHHHHHHcCCceecCCCceeecccCCCCCCHHHHH
Confidence            998 59999999999999999999999986 88999999999999999999999877777778999999875 5567888


Q ss_pred             HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcc---ccccCCC-CCCCCeEEEEeCCCC-CChHHHH
Q 020236          250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSD---GFRKNPA-WQDSKKIGIVLSGGN-VDLGVLW  324 (329)
Q Consensus       250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~---~~~~~~~-~~~~~~vv~v~tgg~-~~~~~~~  324 (329)
                      +++.+.+.++.|+|+|++++++++++++|+++||+||++++|+++.   .+.+.+. +.++++||+|+|||+ +|.+.+.
T Consensus       271 ~~~~~~~~~~~Vsd~e~~~a~~~l~~~eGi~~epssa~alaa~~~~~~~~l~~~g~~~~~~~~Vv~i~tgg~~~~~~~~~  350 (372)
T 1p5j_A          271 LFQEHPIFSEVISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLR  350 (372)
T ss_dssp             HHHHSCEEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCCHHHHH
T ss_pred             HHhhcCCEEEEECHHHHHHHHHHHHHHcCCeechhHHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHHHHH
Confidence            8888999999999999999999999999999999999999998853   1233343 457899999999986 9999998


Q ss_pred             Hhhh
Q 020236          325 DSFR  328 (329)
Q Consensus       325 ~~~~  328 (329)
                      ++++
T Consensus       351 ~~~~  354 (372)
T 1p5j_A          351 ALKE  354 (372)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo sapiens}

Probab=100.00  E-value=3.4e-64  Score=462.39  Aligned_cols=304  Identities=25%  Similarity=0.361  Sum_probs=277.4

Q ss_pred             cccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEE
Q 020236           24 LYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAY  103 (329)
Q Consensus        24 ~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~  103 (329)
                      +.+.+|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++ +.++||++|+||||+|+|++|+.+|++|+
T Consensus         3 ~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptgS~K~R~a~~~l~~a~~~-g~~~vv~~ssGN~g~alA~~a~~~G~~~~   81 (318)
T 2rkb_A            3 PFHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKK-GCRHLVCSSGGNAGIAAAYAARKLGIPAT   81 (318)
T ss_dssp             CSSCCCCEEEEHHHHHHHTSCEEEEEGGGSTTSBTTHHHHHHHHHHHHHT-TCCEEEECCCSHHHHHHHHHHHHHTCCEE
T ss_pred             CCCccCCceehHhhHHHhCCeEEEEecCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEECCchHHHHHHHHHHHcCCCEE
Confidence            45789999999999998899999999999999999999999999988554 67899999999999999999999999999


Q ss_pred             EEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CCCEEEE
Q 020236          104 IVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTIIV  182 (329)
Q Consensus       104 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d~vv~  182 (329)
                      +|||+++++.|+++|+.+||+|+.++++++++.+.+++++++.+++|++||+||.+++||.|+++||++|++ .||+||+
T Consensus        82 i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~q~~~~~d~vvv  161 (318)
T 2rkb_A           82 IVLPESTSLQVVQRLQGEGAEVQLTGKVWDEANLRAQELAKRDGWENVPPFDHPLIWKGHASLVQELKAVLRTPPGALVL  161 (318)
T ss_dssp             EEECTTCCHHHHHHHHHTTCEEEECCSSHHHHHHHHHHHHHSTTEEECCSSCSHHHHHHHHHHHHHHHHHSSSCCSEEEE
T ss_pred             EEECCCCcHHHHHHHHhcCCEEEEECCCHHHHHHHHHHHHHhcCCEEeCCCCChhhccchhHHHHHHHHhcCCCCCEEEE
Confidence            999999999999999999999999999999999999999988889999999999999999999999999998 5999999


Q ss_pred             eCCCChHHHHHHHHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcEEE
Q 020236          183 PISGGGLISGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDVIT  260 (329)
Q Consensus       183 ~~GtGg~~~Gi~~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~  260 (329)
                      |+|+||+++|++.++|+.+ |.++||+|||.+++++++++..|++...+...++++|++.+ +++..|+.++.+.+.++.
T Consensus       162 pvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~~~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~~  241 (318)
T 2rkb_A          162 AVGGGGLLAGVVAGLLEVGWQHVPIIAMETHGAHCFNAAITAGKLVTLPDITSVAKSLGAKTVAARALECMQVCKIHSEV  241 (318)
T ss_dssp             ECSSSHHHHHHHHHHHHHTCTTSCEEEEEETTBCHHHHHHHHTSCCBCSCCCSSCGGGCCSBCCHHHHHHHHHSCEEEEE
T ss_pred             eeCCCcHHHHHHHHHHHhCCCCCEEEEEecCCChHHHHHHHcCCcccCCCCCceecccCCCCCCHHHHHHHHHcCCEEEE
Confidence            9999999999999999986 88999999999999999999999877667778999999875 555788888888999999


Q ss_pred             eCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcc---ccccCCC-CCCCCeEEEEeCCCC-CChHHHHHhhh
Q 020236          261 VEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSD---GFRKNPA-WQDSKKIGIVLSGGN-VDLGVLWDSFR  328 (329)
Q Consensus       261 V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~---~~~~~~~-~~~~~~vv~v~tgg~-~~~~~~~~~~~  328 (329)
                      |+|+|++++++++++++|+++||+||++++|+++.   .+.+.+. +.++++||+|+|||+ +|.+.+.++.+
T Consensus       242 v~d~e~~~a~~~l~~~~gi~~eps~a~a~aa~~~~~~~~~~~~g~~~~~~~~vv~i~tgg~~~~~~~l~~~~~  314 (318)
T 2rkb_A          242 VEDTEAVSAVQQLLDDERMLVEPACGAALAAIYSGLLRRLQAEGCLPPSLTSVVVIVCGGNNINSRELQALKT  314 (318)
T ss_dssp             ECHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHTSHHHHHHHTTSSCSSCSCEEEEECBCSSCCHHHHHHHHH
T ss_pred             ECHHHHHHHHHHHHHhcCcEEchhHHHHHHHHHHhhHHHHhhccccCCCCCeEEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999998853   1123343 457899999999987 99999988765

>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme, tryptophan synthase beta like PLP-dependent enzymes superfamily; HET: IT1; 2.00A {Escherichia coli} PDB: 4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*

Probab=100.00  E-value=5.4e-64  Score=473.74  Aligned_cols=323  Identities=20%  Similarity=0.279  Sum_probs=286.6

Q ss_pred             CCCCCHHHHHHHHHHhc--cccCCCCCccchhhhhhcC-CeEEEEecCCC-CCCccchhhHHHHHhcCchh---------
Q 020236            7 KYAANFSSIKEAQKRIS--LYIHKTPVLSSETLNSMSG-RSLFFKCECFQ-KGGAFKFRGASNAVLSLDED---------   73 (329)
Q Consensus         7 ~~~~~~~~~~~~~~~~~--~~i~~TPl~~~~~l~~~~g-~~i~~K~E~~n-ptGS~KdR~a~~~l~~a~~~---------   73 (329)
                      ...++++++.++.+.+.  +.+++|||+++++|++.+| .+||+|+|++| |+||||||++.+++..+..+         
T Consensus        21 ~~~~~~~~~~~a~~~~~~~~~~~~TPL~~~~~l~~~~g~~~i~~K~E~~~~ptgSfK~Rga~~~i~~~~~~~~G~~~~~l  100 (398)
T 4d9i_A           21 SPLFSQSQAKLARQFHQKIAGYRPTPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETL  100 (398)
T ss_dssp             CSTTSHHHHHHHHHHHTTSTTCCCCCEEECHHHHHHHTSSEEEEEEGGGSTTTTBSTHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred             cccCCHHHHHHHHHHHhhCCCCCCCCceehHHHHHHhCCCcEEEEECCCCCCCCcchhhhhHHHHHHHHHHhhccccccc
Confidence            45689999999988886  4589999999999999999 69999999999 99999999999999887321         


Q ss_pred             --------ccCC-eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHH
Q 020236           74 --------QAIK-GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLE  144 (329)
Q Consensus        74 --------~~~~-~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~  144 (329)
                              .+.+ +||++|+||||+|+|++|+.+|++|+||||++++..|+++++.+||+|+.++++++++.+.++++++
T Consensus       101 ~~e~l~~~~~~~~~vv~aSsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vv~v~~~~~~a~~~a~~~~~  180 (398)
T 4d9i_A          101 SFEHLKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVTDMNYDDTVRLTMQHAQ  180 (398)
T ss_dssp             CHHHHHHCCSCCCEEEEECSSHHHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHTTTCEEEECSSCHHHHHHHHHHHHH
T ss_pred             chhhhhhhccCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHH
Confidence                    2456 8999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HcCCEeeCC-----CCC--cccccccCcchHHHHhhCC-C---CCEEEEeCCCChHHHHHHHHHHHh--CCCCEEEEEec
Q 020236          145 ETGAVLVHP-----YND--GRIISGQGTISLEFLEQVP-L---LDTIIVPISGGGLISGVALAAKSI--KPAIRILAAEP  211 (329)
Q Consensus       145 ~~~~~~~~~-----~~n--~~~~~g~~t~~~Ei~~ql~-~---~d~vv~~~GtGg~~~Gi~~~~k~~--~~~~~vi~v~~  211 (329)
                      +.+++|++|     |++  ++.++||.|+++||++|++ .   ||+||+|+|+||+++|++.++++.  .|.++||+|||
T Consensus       181 ~~g~~~v~~~~~~g~~~~~~~~~~G~~t~~~Ei~~q~~~~g~~~d~vvvpvG~GG~~aGi~~~~k~~~~~~~~~vigVep  260 (398)
T 4d9i_A          181 QHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMGVTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHSIIVEP  260 (398)
T ss_dssp             HHTCEECCSSCBTTBCHHHHHHHHHHHHHHHHHHHHHHHTTCCCSEEEEECSSSHHHHHHHHHHHHHHCTTSCEEEEEEE
T ss_pred             HcCCEEecCcccCCcCCCCchhhhhHHHHHHHHHHHhhhcCCCCCEEEEecCccHHHHHHHHHHHHhcCCCCCEEEEEEe
Confidence            889999996     653  6789999999999999997 3   999999999999999999999876  47899999999


Q ss_pred             CCCchHHHHHHcCCeeecC-CCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcC----ceeCcch
Q 020236          212 IGANDAAQSKAAGRIITLL-ETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILK----VAVEPSG  285 (329)
Q Consensus       212 ~~~~~~~~~~~~g~~~~~~-~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~eg----i~~~pss  285 (329)
                      .+++++++++..|++...+ ..+|+++|++.+ ++...|+++++++|+++.|+|+|+++++++|+++||    +++||+|
T Consensus       261 ~~~~~~~~s~~~g~~~~~~~~~~tia~gl~~~~p~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~eG~~~~i~~epss  340 (398)
T 4d9i_A          261 DKADCIYRSGVKGDIVNVGGDMATIMAGLACGEPNPLGWEILRNCATQFISCQDSVAALGMRVLGNPYGNDPRIISGESG  340 (398)
T ss_dssp             TTSCHHHHHHHHTSCCCC------CCTTCCCSSCCHHHHHHHHHHCCEEEEECTHHHHHHHHHHHSCSTTCCCCCCCHHH
T ss_pred             CCCchHHHHHHcCCceecCCCCCceeccccCCCCCHHHHHHHHHcCCeEEEECHHHHHHHHHHHHHhhCCCCcEEECchH
Confidence            9999999999999877665 478999999875 566678899999999999999999999999999999    9999999


Q ss_pred             HHHHHHHhccc-------cccCCCCCCCCeEEEEeCCCCCChHHHHHhhhC
Q 020236          286 AIGLAAVLSDG-------FRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFRK  329 (329)
Q Consensus       286 a~alaa~~~~~-------~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~~~  329 (329)
                      |++++|++++.       +.+++.+.++++||+++|||++|++.|.+++++
T Consensus       341 a~alaa~~~~~~~~~~~~l~~~~~~~~~~~Vv~i~tGG~~d~~~~~~~~~~  391 (398)
T 4d9i_A          341 AVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLVISTEGDTDVKHYREVVWE  391 (398)
T ss_dssp             HHHHHHHHHHHHSTTHHHHHHHTTCCTTCEEEEEECBCCSSHHHHHHHHTT
T ss_pred             HHHHHHHHHhhhhhhhHHHHHhcCCCCCCEEEEEeCCCCCCHHHHHHHHhc
Confidence            99999998761       123445668899999999999999999998864

>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*

Probab=100.00  E-value=6.3e-62  Score=449.28  Aligned_cols=297  Identities=25%  Similarity=0.293  Sum_probs=258.3

Q ss_pred             CHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCe-EEEECCch
Q 020236           11 NFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKG-VVTHSSGN   86 (329)
Q Consensus        11 ~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~-vv~~ssGN   86 (329)
                      +++++..+++++.+.+++|||+++++| +.+|.+||+|+|++|||||||||++.+++..+.+++.   .++ ||++|+||
T Consensus         4 p~~~i~~~~~~i~~~ig~TPL~~l~~l-~~~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~l~~g~~vvv~aSsGN   82 (334)
T 3tbh_A            4 PFDKSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKEGKLIPGKSIVVESSSGN   82 (334)
T ss_dssp             CCCTTTSCCSSGGGGSSCCCEEECCTT-CCSSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSH
T ss_pred             chhhHHHHHHHHHHhcCCCCeEECCcc-cCCCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCeEEEEeCCCH
Confidence            566777778889999999999999999 7788999999999999999999999999998865543   155 59999999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEeeCCCCCcc-cccc
Q 020236           87 HAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEET-GAVLVHPYNDGR-IISG  162 (329)
Q Consensus        87 ~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~n~~-~~~g  162 (329)
                      ||+|+|++|+.+|++|+||||++.+..|+++++.+||+|+.++++  ++++.+.+++++++. +++|++||+||. ...|
T Consensus        83 ~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~np~n~~~g  162 (334)
T 3tbh_A           83 TGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIH  162 (334)
T ss_dssp             HHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCchHHHHHHHHHHHhCCCEEECCccCChhHHHHH
Confidence            999999999999999999999999999999999999999999874  788999999998886 899999999998 5678


Q ss_pred             cCcchHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCcccccccc
Q 020236          163 QGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA  241 (329)
Q Consensus       163 ~~t~~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~  241 (329)
                      |.|+++||++|++ .||+||+|+|+||+++|++.++|+.+|.++||+|||.+++++.    .|++.     ....+|++.
T Consensus       163 ~~t~~~Ei~~q~~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~----~g~~~-----~~~~~gi~~  233 (334)
T 3tbh_A          163 EETTGPEIWEQTNHNVDCFIAGVGTGGTLTGVARALKKMGSHARIVAVEPTESPVLS----GGKPG-----PHKIQGIGP  233 (334)
T ss_dssp             HHTHHHHHHHHTTSCCSEEEEECSSSHHHHHHHHHHHHTTCCCEEEEEEETTSCTTT----TCCCC-----CCSCTTSCC
T ss_pred             HHHHHHHHHHHhCCCCCEEEeccCCcHhHHHHHHHHHHhCCCCEEEEEeeCCchHhh----CCCcC-----CeecCCCCC
Confidence            9999999999996 7999999999999999999999999999999999999998653    44432     122345554


Q ss_pred             CCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCCh
Q 020236          242 FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDL  320 (329)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~  320 (329)
                      +.  ..+.+.++++|+++.|+|+|++++++++++++|+++||+||++++|++++  .+++ +.++++||+|+|| |++|+
T Consensus       234 ~~--~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssgaa~aa~~~~--~~~~-~~~g~~Vv~v~t~~g~ky~  308 (334)
T 3tbh_A          234 GF--VPDVLDRSLIDEVLCVAGDDAIETALKLTRSDGVFCGFSGGANVYAALKI--AERP-EMEGKTIVTVIPSFGERYL  308 (334)
T ss_dssp             SS--CCTTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHSG-GGTTCEEEEEECBBGGGGT
T ss_pred             Cc--CCHHHHHHhCCEEEEECHHHHHHHHHHHHHHcCeEEcHHHHHHHHHHHHH--HHhc-cCCcCeEEEEECCCCcccc
Confidence            31  12334467899999999999999999999999999999999999999987  4443 3478999999997 79998


Q ss_pred             HH
Q 020236          321 GV  322 (329)
Q Consensus       321 ~~  322 (329)
                      ++
T Consensus       309 ~~  310 (334)
T 3tbh_A          309 ST  310 (334)
T ss_dssp             TS
T ss_pred             Cc
Confidence            86

>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P 5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli} PDB: 3ss9_X* 3r0x_A* 3r0z_A

Probab=100.00  E-value=1.1e-60  Score=455.62  Aligned_cols=321  Identities=17%  Similarity=0.182  Sum_probs=279.8

Q ss_pred             CCCCCCHHHHHHHHHHhccc----------------cCCCCCccchhhh----hhcC----CeEEEEecCCCC-CCccch
Q 020236            6 EKYAANFSSIKEAQKRISLY----------------IHKTPVLSSETLN----SMSG----RSLFFKCECFQK-GGAFKF   60 (329)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~----------------i~~TPl~~~~~l~----~~~g----~~i~~K~E~~np-tGS~Kd   60 (329)
                      +...++++++.++..++..+                +++|||+++++|+    +.+|    .+||+|+|++|| ||||||
T Consensus        40 ~~~~~~~~di~~a~~~l~~~~~~l~~~~~~~~~~~g~~~TPL~~~~~l~~~l~~~~g~~~~~~v~lK~E~~~p~tGSfK~  119 (442)
T 3ss7_X           40 PYVGLTEQDVQDAHARLSRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKA  119 (442)
T ss_dssp             GGTSCCHHHHHHHHHHHHHHHHHHHHHSGGGGGGTTCCCCCEEECHHHHHHHHHHHTCCCCSEEEEEEGGGCTTTSBTHH
T ss_pred             CcCCCCHHHHHHHHHHHHhCHHhHhhhChhhhccCCCCCCCcEEhHhhhhHHHHhhCCCcCCeEEEeecCCCCCCCCcHH
Confidence            45568899999998888643                3699999999987    6665    799999999999 999999


Q ss_pred             hhHHHHHhc-----CchhccC--------------------CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHH
Q 020236           61 RGASNAVLS-----LDEDQAI--------------------KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKV  115 (329)
Q Consensus        61 R~a~~~l~~-----a~~~~~~--------------------~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~  115 (329)
                      |++.+++..     +.+.+..                    .+|+++|+||||+|+|++|+++|++|+||||++++..|+
T Consensus       120 Rga~~~i~~l~~~~a~~~G~l~~g~~~~~l~~~~~r~~~~~~~vv~aSsGNhg~avA~~aa~~G~~~~Ivmp~~~~~~k~  199 (442)
T 3ss7_X          120 RGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKK  199 (442)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCTTSCGGGGGSHHHHHHHHTSEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHH
T ss_pred             HHHHHHHHHHhHHHHHHcCCCCCCcchhhhhhhhhhhhccCcEEEEECCCHHHHHHHHHHHHhCCcEEEEECCCCCHHHH
Confidence            999999975     3333321                    489999999999999999999999999999999999999


Q ss_pred             HHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCC---------CCCEEEEeCC
Q 020236          116 ENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVP---------LLDTIIVPIS  185 (329)
Q Consensus       116 ~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~---------~~d~vv~~~G  185 (329)
                      .+++.+||+|+.++++++++.+.+++++++. ++++++++++++.++||.|+++||++|++         .||+||+|+|
T Consensus       200 ~~~r~~GA~Vv~v~~~~~~a~~~a~~~a~~~~~~~~i~~~n~~~~~~G~~t~g~Ei~eQl~~~g~~vD~~~Pd~VvvpvG  279 (442)
T 3ss7_X          200 AKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCG  279 (442)
T ss_dssp             HHHHHTTCEEEEESSCHHHHHHHHHHHHHTCTTEEECCTTTCHHHHHHHHHHHHHHHHHHHHHTCCCBTTBCEEEEEECS
T ss_pred             HHHHHCCCEEEEECCCHHHHHHHHHHHHHhCCCceeCCCCChHHHHHHHHHHHHHHHHHHHhhcCcccccCCCEEEEEeC
Confidence            9999999999999999999999999998875 57889997777789999999999999985         2569999999


Q ss_pred             CChHHHHHHHHHHHh-CCCCEEEEEecCCCchHHHHHHcCCeee--cC----CCCccccccccC-CCcccHHHHhhcCCc
Q 020236          186 GGGLISGVALAAKSI-KPAIRILAAEPIGANDAAQSKAAGRIIT--LL----ETNTVADGLRAF-LGDLTWPIVRDLVDD  257 (329)
Q Consensus       186 tGg~~~Gi~~~~k~~-~~~~~vi~v~~~~~~~~~~~~~~g~~~~--~~----~~~t~~~gl~~~-~~~~~~~~~~~~~~~  257 (329)
                      +||+++|++.+||+. +|.+++|+|||.++++++.++..|...+  ++    ..+|+++||+.+ ++...++++++++|+
T Consensus       280 ~GG~~aGi~~~lk~~~~~~v~vigVep~~~~~~~~~~~~G~~~~~~v~~~g~~~~TiAdgl~v~~~~~~~~~~~~~~~d~  359 (442)
T 3ss7_X          280 VGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDG  359 (442)
T ss_dssp             SSHHHHHHHHHHHHHHGGGEEEEEEEETTCCHHHHHHHHSCGGGCBGGGGTCCCCCSCGGGCCSBCCSSHHHHHGGGCCE
T ss_pred             CchHHHHHHHHHHHhcCCCCEEEEEEeCCchHHHHHHhcCCCceeeeccCCCchhhHHhhcCCCCCchhHHHHHHhhCCe
Confidence            999999999999997 7999999999999999999999987643  21    468999999986 677788999999999


Q ss_pred             EEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccC------CCCCC----CCeEEEEeCCC-CCChHHHHHh
Q 020236          258 VITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKN------PAWQD----SKKIGIVLSGG-NVDLGVLWDS  326 (329)
Q Consensus       258 ~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~------~~~~~----~~~vv~v~tgg-~~~~~~~~~~  326 (329)
                      ++.|+|+|+++++++|+++|||++||+||++++|++++  .+.      ..+.+    +++||+++||| .++.+.+.+.
T Consensus       360 ~~~Vsd~e~~~a~~~L~~~eGi~~epssaaalAa~~~l--~~~~~~~~~~~l~~~~~~~~~vv~i~TGG~~~~~~~~~~~  437 (442)
T 3ss7_X          360 FYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRV--CASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEEMNQY  437 (442)
T ss_dssp             EEEECHHHHHHHHHHHHHHHCCCCCGGGGGGGGHHHHH--HHCHHHHHHHTCCHHHHHTCEEEEEECBCTTCCHHHHHHH
T ss_pred             EEEECHHHHHHHHHHHHHHCCCeEcHHHHHHHHHHHHH--HhchhhHHhcCCCcccCCCCeEEEEECCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999887  332      11222    78999999986 6677888877


Q ss_pred             hh
Q 020236          327 FR  328 (329)
Q Consensus       327 ~~  328 (329)
                      +.
T Consensus       438 ~~  439 (442)
T 3ss7_X          438 LA  439 (442)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*

Probab=100.00  E-value=1.1e-60  Score=442.21  Aligned_cols=291  Identities=19%  Similarity=0.249  Sum_probs=243.9

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSLA   94 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~~   94 (329)
                      .++|.+.||+|||+++++|++.+|++||+|+|++|||||||||++.+++..+.+++.    .++||++|+||||.|+|++
T Consensus        26 ~~~i~~lIG~TPLv~~~~Ls~~~G~~IylK~E~lnptGSfK~RgA~~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~  105 (344)
T 3vc3_A           26 KKHVSQLIGRTPLVYLNKVTEGCGAYVAVKQEMMQPTASIADRPAYAMITDAEEKNLITPGKTTLIEPTSGNMGISMAFM  105 (344)
T ss_dssp             BSSGGGGSCCCCEEECCSTTTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHH
T ss_pred             hccHhhhcCCCceEECcccchhhCCEEEEEecCCCCCCCcHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHH
Confidence            345678899999999999999999999999999999999999999999999866643    4689999999999999999


Q ss_pred             HHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHH-HHcCCEeeCCCCCcc-cccccCcchHHH
Q 020236           95 AKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVL-EETGAVLVHPYNDGR-IISGQGTISLEF  170 (329)
Q Consensus        95 a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~-~~~~~~~~~~~~n~~-~~~g~~t~~~Ei  170 (329)
                      |+.+|++|+||||+++++.|+++++.+||+|+.++..  .......+.++. ++.+.++++||+||. ...|+.|+++||
T Consensus       106 aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~np~~~~a~~~t~g~EI  185 (344)
T 3vc3_A          106 AAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPAKGMGGTVKKAYELLENTPNAHMLQQFSNPANTQVHFETTGPEI  185 (344)
T ss_dssp             HHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEECCCTTTCHHHHHHHHHTHHHHH
T ss_pred             HHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCCCcchHHHHHHHHHHhhccCceeccccccchhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999864  333344444444 446889999999997 567899999999


Q ss_pred             HhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHH
Q 020236          171 LEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWP  249 (329)
Q Consensus       171 ~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~  249 (329)
                      ++|++ .||+||+|+|+||+++|++.++|+.+|++++|+|||.+++.+    ..+...+.     ...|++.......  
T Consensus       186 ~eq~~~~~d~vv~~vGgGG~~~Gi~~~~k~~~p~v~vigVep~~s~~l----~~~~~~~~-----~i~g~g~~~~~~~--  254 (344)
T 3vc3_A          186 WEDTNGQVDIFVMGIGSGGTVSGVGQYLKSKNPNVKIYGVEPSESNVL----NGGKPGPH-----HITGNGVGFKPDI--  254 (344)
T ss_dssp             HHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGG----GTCCCCCC-----SCTTSCCSSCCTT--
T ss_pred             HHHhCCCceEEEEecCCccchHHHhhhhHhhCCCceEEEEcCCCChhh----cCCCCCCe-----eEecccccccCcc--
Confidence            99996 899999999999999999999999999999999999998764    33333211     1234333211111  


Q ss_pred             HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHH
Q 020236          250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVL  323 (329)
Q Consensus       250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~  323 (329)
                      ...+.+|.++.|+|+|+++++++|+++||++++|+||++++|++++  ++.. ..++++||+|+|| |.+|++++
T Consensus       255 ~~~~~~d~~v~v~d~eai~a~~~L~~~eGi~v~~ssga~~~aAl~~--a~~~-~~~g~~VV~il~d~G~rYlst~  326 (344)
T 3vc3_A          255 LDLDVMEKVLEVSSEDAVNMARVLALKEGLMVGISSGANTVAALRL--AQLP-ENKGKLIVTVHPSFGERYLSSV  326 (344)
T ss_dssp             CCGGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HTSG-GGTTCEEEEEECBBGGGGTTST
T ss_pred             cchhhceEEEEECHHHHHHHHHHHHHHCCCEEehhHHHHHHHHHHH--hccc-cCCCCEEEEEECCCchhhccch
Confidence            1246789999999999999999999999999999999999998876  4432 3478999999997 88998863

>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*

Probab=100.00  E-value=3.9e-61  Score=442.58  Aligned_cols=283  Identities=18%  Similarity=0.225  Sum_probs=248.7

Q ss_pred             HHHhccccCCCCCccchhhhhh-------cCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSM-------SGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHA   88 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~-------~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g   88 (329)
                      ++++.+.+++|||+++++|++.       .|.+||+|+|++|||||||||++.+++..+.+++.   .++||++|+||||
T Consensus         6 ~~~i~~~ig~TPL~~~~~l~~~~~~~~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~l~~~~~vv~aSsGN~g   85 (325)
T 3dwg_A            6 YDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQAEADGLLRPGATILEPTSGNTG   85 (325)
T ss_dssp             ESSTGGGCSCCCEEECTTTSSBSSCBTTBCCEEEEEEETTSSTTSBTTHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHH
T ss_pred             ccCHHHhcCCCCcEEccccchhhcccccCCCcEEEEEECCCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHH
Confidence            3567789999999999999887       67899999999999999999999999998865543   3789999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHcC-CEeeCCCCCcccc-cccC
Q 020236           89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEETG-AVLVHPYNDGRII-SGQG  164 (329)
Q Consensus        89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~-~~~~~~~~n~~~~-~g~~  164 (329)
                      +|+|++|+++|++|+||+|++.+..|+++++.+||+|+.+++  +++++.+.+++++++.+ ++|++||+||.++ .||.
T Consensus        86 ~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~np~~~~~g~~  165 (325)
T 3dwg_A           86 ISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYC  165 (325)
T ss_dssp             HHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECSTTTHHHHHHHHHHHHHHCTTSBCCCTTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCeEeCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999987  57899999999988865 9999999999977 6999


Q ss_pred             cchHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCC
Q 020236          165 TISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLG  244 (329)
Q Consensus       165 t~~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~  244 (329)
                      |+++||++|++.||+||+|+||||+++|++.++|+..|.++||+|||.+++.++            ...++..++.+   
T Consensus       166 t~~~Ei~~q~~~~d~vv~pvG~GG~~aGi~~~~k~~~p~~~vigVe~~~~~~~~------------~~~~i~~~~~~---  230 (325)
T 3dwg_A          166 GTGPELLADLPEITHFVAGLGTTGTLMGTGRFLREHVANVKIVAAEPRYGEGVY------------ALRNMDEGFVP---  230 (325)
T ss_dssp             THHHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHSTTCEEEEEEEECCGGGG------------CCSSGGGCCCC---
T ss_pred             HHHHHHHHhcCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEEEEeeCCCcchh------------ccCcccCCcCc---
Confidence            999999999999999999999999999999999999999999999999997651            12344443321   


Q ss_pred             cccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCe--EEEEeCC-CCCChH
Q 020236          245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKK--IGIVLSG-GNVDLG  321 (329)
Q Consensus       245 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~--vv~v~tg-g~~~~~  321 (329)
                         +.+.++++|.++.|+|+|+++++++|++++|+++||+||++++|++++  .++. ..++++  ||+|+|| |.+|++
T Consensus       231 ---~~~~~~~~d~~~~V~d~e~~~a~~~l~~~egi~~epssa~a~aa~~~~--~~~~-~~~g~~~~Vv~i~~g~g~ky~~  304 (325)
T 3dwg_A          231 ---ELYDPEILTARYSVGAVDAVRRTRELVHTEGIFAGISTGAVLHAALGV--GAGA-LAAGERADIALVVADAGWKYLS  304 (325)
T ss_dssp             ---TTCCGGGCSEEEEEEHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHHH-HHHTCCEEEEEEECBBGGGGGG
T ss_pred             ---ccccHhhCCeEEEECHHHHHHHHHHHHHHcCceechhHHHHHHHHHHH--HHHh-ccCCCCCeEEEEECCCCccccC
Confidence               123357899999999999999999999999999999999999999986  3332 124566  9999998 789998


Q ss_pred             H
Q 020236          322 V  322 (329)
Q Consensus       322 ~  322 (329)
                      +
T Consensus       305 ~  305 (325)
T 3dwg_A          305 T  305 (325)
T ss_dssp             G
T ss_pred             c
Confidence            7

>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A {Aquifex aeolicus}

Probab=100.00  E-value=2.6e-60  Score=442.21  Aligned_cols=298  Identities=22%  Similarity=0.297  Sum_probs=262.8

Q ss_pred             HhccccCCCCCccchhhhhhcCCe--EEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHc
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRS--LFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLR   98 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~--i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~   98 (329)
                      ++...+|+|||+++++|++.+|.+  ||+|+|++|||||||||++.+++.++.+ .+.++||++||||||+|+|++|+.+
T Consensus        23 ~v~~~~g~TPL~~~~~l~~~~g~~~~i~~K~E~~~ptGS~KdR~a~~~l~~a~~-~g~~~vv~~SsGN~g~alA~~a~~~  101 (352)
T 2zsj_A           23 IVTLYEGNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVE-AGKRAVICASTGNTSASAAAYAARA  101 (352)
T ss_dssp             CCCCCCCCCCEEECHHHHHHHTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHH-TTCCEEEECCSSHHHHHHHHHHHHH
T ss_pred             ceecccCCCCCeehHHHHHHhCCCceEEEEECCCCCCccHHHHHHHHHHHHHHh-cCCCEEEEeCCchHHHHHHHHHHhc
Confidence            456778999999999999888988  9999999999999999999999998854 4678999999999999999999999


Q ss_pred             CCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-C
Q 020236           99 GIPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-L  176 (329)
Q Consensus        99 G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~  176 (329)
                      |++|++|+|++ ++..|+++++.+||+|+.++++++++.+.+++++++.+++|+++ +||.+++||.|+++||++|++ .
T Consensus       102 G~~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~~~~~~~~~-~n~~~~~g~~t~~~Ei~~q~~~~  180 (352)
T 2zsj_A          102 GLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQGTFDDALNIVRKIGENFPVEIVNS-VNPYRIEGQKTAAFEICDTLGEA  180 (352)
T ss_dssp             TCEEEEEEEGGGCCHHHHHHHHHTTCEEEEESSCHHHHHHHHHHHHHHSSEEECST-TCTHHHHHHTHHHHHHHHHHSSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCcEECCC-CCcchhhhHhHHHHHHHHHcCCC
Confidence            99999999998 99999999999999999999999999999999998888888988 899999999999999999998 5


Q ss_pred             CCEEEEeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCc---cc
Q 020236          177 LDTIIVPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD---LT  247 (329)
Q Consensus       177 ~d~vv~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~---~~  247 (329)
                      ||+||+|+||||+++|++.++|+..+      .+|+++|||.+++++.    .|++..  ..+++++|++.+...   ..
T Consensus       181 ~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~----~g~~~~--~~~t~a~gl~~~~~~~~~~~  254 (352)
T 2zsj_A          181 PDYHFIPVGNAGNITAYWKGFKIYYEEGKITKLPRMMGWQAEGAAPIV----KGYPIK--NPQTIATAIKIGNPYSWKSA  254 (352)
T ss_dssp             CSEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEETTBCHHH----HTSCCS--SCCCSCGGGCCSSCTTHHHH
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHHHhcCCCCCCCEEEEEecCCCcHHh----cCCccC--CCcchhHHhcCCCCCcHHHH
Confidence            99999999999999999999998753      6899999999998753    344322  346888888764211   12


Q ss_pred             HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCC-CChHHHHHh
Q 020236          248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGN-VDLGVLWDS  326 (329)
Q Consensus       248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~-~~~~~~~~~  326 (329)
                      +.+++++.+.++.|+|+|++++++++++++|+++||+||++++|++++  .+++.+.++++||+++|||+ +|++.+.+.
T Consensus       255 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~--~~~~~~~~~~~vv~i~tg~~~k~~~~~~~~  332 (352)
T 2zsj_A          255 LKAAQESGGKIDAVSDSEILYAYKLIASTEGVFCEPASAASVAGLIKL--VREGFFKGGEVVTCTLTGNGLKDPDTAIKV  332 (352)
T ss_dssp             HHHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHTTCCCSCCEEEEEECBBGGGCHHHHHHH
T ss_pred             HHHHHHhCCeEEEECHHHHHHHHHHHHHhCCeeECchHHHHHHHHHHH--HHhCCCCCCCeEEEEeCCCCccChHHHHHh
Confidence            335678899999999999999999999999999999999999999987  55555567899999999965 899998876


Q ss_pred             hh
Q 020236          327 FR  328 (329)
Q Consensus       327 ~~  328 (329)
                      +.
T Consensus       333 ~~  334 (352)
T 2zsj_A          333 CE  334 (352)
T ss_dssp             CC
T ss_pred             cc
Confidence            53

>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*

Probab=100.00  E-value=3.1e-60  Score=435.69  Aligned_cols=293  Identities=20%  Similarity=0.228  Sum_probs=254.8

Q ss_pred             HHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHH
Q 020236           20 KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAK   96 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~   96 (329)
                      +++.+.+++|||+++++| + .|.+||+|+|++|||||||||++.+++..+.+++.   ..+|+++||||||+|+|++|+
T Consensus         5 ~~i~~~~~~TPL~~l~~l-~-~g~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~~~~vv~~ssGN~g~a~A~~a~   82 (316)
T 1y7l_A            5 ADNSYSIGNTPLVRLKHF-G-HNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVAA   82 (316)
T ss_dssp             SSGGGGCCCCCEEECSSS-S-STTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHHH
T ss_pred             hhhHHhcCCCCcEECccC-C-CCCEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCcHHHHHHHHHHH
Confidence            457788999999999999 6 78999999999999999999999999998865543   268999999999999999999


Q ss_pred             HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHHc-CC-EeeCCCCCccccc-ccCcchHHHH
Q 020236           97 LRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEET-GA-VLVHPYNDGRIIS-GQGTISLEFL  171 (329)
Q Consensus        97 ~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~-~~-~~~~~~~n~~~~~-g~~t~~~Ei~  171 (329)
                      .+|++|+||||+++++.|+++++.+||+|+.++++  ++++.+.+++++++. ++ ++++||+||.++. ||.|+++||+
T Consensus        83 ~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~  162 (316)
T 1y7l_A           83 ARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIW  162 (316)
T ss_dssp             HHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHHH
T ss_pred             HcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999985  888999999998886 46 8899999998654 7999999999


Q ss_pred             hhCC-CCCEEEEeCCCChHHHHHHHHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHH
Q 020236          172 EQVP-LLDTIIVPISGGGLISGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWP  249 (329)
Q Consensus       172 ~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~  249 (329)
                      +|++ +||+||+|+|+||+++|++.++|+++ |.+|||+|||.+++.+.. +..|+....  ..+..+|++.+.  ..+.
T Consensus       163 ~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~~vi~ve~~~~~~~~~-~~~g~~~~~--~~~~~~gi~~~~--~~~~  237 (316)
T 1y7l_A          163 KDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQ-TLAGEEVKP--GPHKIQGIGAGF--IPKN  237 (316)
T ss_dssp             HHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHH-HHHTCCCCC--CCCSCTTSCCSS--CCTT
T ss_pred             HHcCCCCCEEEEeCCccccHHHHHHHHHHhCCCCCEEEEEecCCCccccc-cccCCccCC--CCcccCcCCCCC--CCch
Confidence            9998 49999999999999999999999998 999999999999987766 777765431  234457776531  1233


Q ss_pred             HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      +.++++|+++.|+|+|++++++++++++|+++||+||++++|++++  .+++ ..++++||+++|| |.+|+++
T Consensus       238 ~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~~laa~~~~--~~~~-~~~~~~vv~i~tg~g~k~~~~  308 (316)
T 1y7l_A          238 LDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRL--AKLP-EFADKLIVVILPSASERYLST  308 (316)
T ss_dssp             CCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HTSG-GGTTCEEEEEECBBCSSCCCT
T ss_pred             hhHhhCCEEEEECHHHHHHHHHHHHHhhCCeEcHHHHHHHHHHHHH--HHhc-CCCCCeEEEEECCCCcccCCc
Confidence            4467889999999999999999999999999999999999999986  4443 2367899999998 6888876

>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A

Probab=100.00  E-value=1.8e-60  Score=443.08  Aligned_cols=297  Identities=23%  Similarity=0.256  Sum_probs=262.1

Q ss_pred             HhccccCCCCCccc--hhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHc
Q 020236           21 RISLYIHKTPVLSS--ETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLR   98 (329)
Q Consensus        21 ~~~~~i~~TPl~~~--~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~   98 (329)
                      ++...+++|||+++  ++|++..|.+||+|+|++|||||||||++.+++.++.+ .+.++||++|+||||+|+|++|+.+
T Consensus        21 ~v~~~~g~TPL~~~~~~~l~~~~g~~v~~K~E~~~ptgS~KdR~a~~~l~~a~~-~g~~~vv~~SsGN~g~alA~~a~~~   99 (351)
T 3aey_A           21 VISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVE-GGAQAVACASTGNTAASAAAYAARA   99 (351)
T ss_dssp             CCCSCCCCCCEEECCCCHHHHTTTCEEEEEEGGGSTTSBTTHHHHHHHHHHHHH-TTCSEEEESCSSHHHHHHHHHHHHH
T ss_pred             ceecCCCCCCeeecCchhhHHHhCCeEEEEecCCCCcccHHHHHHHHHHHHHHh-cCCCEEEEeCCCHHHHHHHHHHHHc
Confidence            46678899999999  99998889999999999999999999999999998854 4678999999999999999999999


Q ss_pred             CCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-C
Q 020236           99 GIPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-L  176 (329)
Q Consensus        99 G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~  176 (329)
                      |++|++|+|++ ++..|+++++.+||+|+.++++++++.+.+++++++.+++|+++ +||.+++||.|+++||++|++ .
T Consensus       100 G~~~~iv~p~~~~~~~k~~~~~~~GA~V~~v~~~~~~~~~~a~~l~~~~~~~~~~~-~n~~~~~g~~t~~~Ei~~q~~~~  178 (351)
T 3aey_A          100 GILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDALRLTQKLTEAFPVALVNS-VNPHRLEGQKTLAFEVVDELGDA  178 (351)
T ss_dssp             TSEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSEEECST-TCHHHHHHHHHHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCcEecCC-CCccceeeeeeHHHHHHHHcCCC
Confidence            99999999998 99999999999999999999999999999999998888889988 899999999999999999998 5


Q ss_pred             CCEEEEeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCC---ccc
Q 020236          177 LDTIIVPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLG---DLT  247 (329)
Q Consensus       177 ~d~vv~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~---~~~  247 (329)
                      ||+||+|+||||+++|++.++|+..+      .+++++|||.+++++.    .|++..  ..+++++|++.+..   ...
T Consensus       179 ~d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~----~g~~~~--~~~t~a~gl~~~~~~~~~~~  252 (351)
T 3aey_A          179 PHYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLV----LGRPVE--RPETLATAIRIGNPASWQGA  252 (351)
T ss_dssp             CSEEEEECSSSHHHHHHHHHHHHHHHHTSCSSCCEEEEEEEGGGCHHH----HTSCCS--SCCCSCGGGCCSSCTTHHHH
T ss_pred             CCEEEEecCchHHHHHHHHHHHHHHhccccCCCCeEEEEecCCCChhh----cCcccC--CccchhHhhcCCCCCCHHHH
Confidence            89999999999999999999998753      6899999999988753    454332  34688888876421   122


Q ss_pred             HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCC-CChHHHHHh
Q 020236          248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGN-VDLGVLWDS  326 (329)
Q Consensus       248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~-~~~~~~~~~  326 (329)
                      +++++++.+.++.|+|+|++++++++++++|+++||+||++++|++++  .+++.+.++++||+++|||+ +|++.+.+.
T Consensus       253 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~--~~~~~~~~~~~vv~i~tg~~~k~~~~~~~~  330 (351)
T 3aey_A          253 VRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKL--LREGRLEPESTVVLTLTGHGLKDPATAERV  330 (351)
T ss_dssp             HHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHH--HHTTCSCTTCEEEEEECBBGGGCHHHHCSC
T ss_pred             HHHHHHhCCeEEEECHHHHHHHHHHHHHhCCEEECchHHHHHHHHHHH--HHhcCCCCCCeEEEEECCCCCCCHHHHHHh
Confidence            345678899999999999999999999999999999999999999987  55555567899999999965 899988664


Q ss_pred             h
Q 020236          327 F  327 (329)
Q Consensus       327 ~  327 (329)
                      +
T Consensus       331 ~  331 (351)
T 3aey_A          331 A  331 (351)
T ss_dssp             C
T ss_pred             c
Confidence            4

>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate, PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}

Probab=100.00  E-value=3.7e-60  Score=442.09  Aligned_cols=297  Identities=21%  Similarity=0.287  Sum_probs=261.3

Q ss_pred             HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCC
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGI  100 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~  100 (329)
                      ++...+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+ .+..+||++|+||||+|+|++|+.+|+
T Consensus        31 ~v~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfKdR~a~~~l~~a~~-~g~~~vv~aSsGN~g~alA~~a~~~G~  109 (360)
T 2d1f_A           31 PVTLLEGGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALA-HGQRAVLCASTGNTSASAAAYAARAGI  109 (360)
T ss_dssp             CCCCCCCCCCEEECHHHHHHHSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHH-TTCSEEEECCSSHHHHHHHHHHHHHTC
T ss_pred             ccccccCCCCCeechhhHHHhCCeEEEEECCCCCCcCHHHHHHHHHHHHHHH-CCCCEEEEeCCcHHHHHHHHHHHHcCC
Confidence            4556789999999999999889999999999999999999999999998854 467899999999999999999999999


Q ss_pred             CEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcC-CEeeCCCCCcccccccCcchHHHHhhCC-CC
Q 020236          101 PAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETG-AVLVHPYNDGRIISGQGTISLEFLEQVP-LL  177 (329)
Q Consensus       101 ~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~-~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~  177 (329)
                      +|++|+|++ ++..|+++++.+||+|+.++++++++.+.+++++++.+ ++++++ +||.+++||.|+++||++|++ .|
T Consensus       110 ~~~i~~p~~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~a~~l~~~~~~~~~i~~-~n~~~~~g~~t~~~Ei~~q~~~~~  188 (360)
T 2d1f_A          110 TCAVLIPQGKIAMGKLAQAVMHGAKIIQIDGNFDDCLELARKMAADFPTISLVNS-VNPVRIEGQKTAAFEIVDVLGTAP  188 (360)
T ss_dssp             EEEEEECSSCCCHHHHHHHHHTTCEEEEBSSCHHHHHHHHHHHHHHCTTEEECST-TCHHHHHHHTHHHHHHHHHHSSCC
T ss_pred             cEEEEEcCCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHhcCCeEEcCC-CChhhhhhHHHHHHHHHHHcCCCC
Confidence            999999998 99999999999999999999999999999999988876 788888 899999999999999999997 59


Q ss_pred             CEEEEeCCCChHHHHHHHHHHHhCC------CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCc---ccH
Q 020236          178 DTIIVPISGGGLISGVALAAKSIKP------AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD---LTW  248 (329)
Q Consensus       178 d~vv~~~GtGg~~~Gi~~~~k~~~~------~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~---~~~  248 (329)
                      |+||+|+|+||+++|++.++++..+      .+++++|||.+++++.    .|++..  ..+++++|++.+...   ..+
T Consensus       189 d~vvvpvG~GG~~~Gi~~~~k~~~~~G~~~~~~~vigve~~~~~~~~----~g~~~~--~~~t~a~gl~~~~~~~~~~~~  262 (360)
T 2d1f_A          189 DVHALPVGNAGNITAYWKGYTEYHQLGLIDKLPRMLGTQAAGAAPLV----LGEPVS--HPETIATAIRIGSPASWTSAV  262 (360)
T ss_dssp             SEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHH----HSSCCS--SCCCSCGGGCCSSCTTHHHHH
T ss_pred             CEEEEeCCchHHHHHHHHHHHHHHhccccccCceEEEEecCCCCHHh----cCCccC--CccchHHHhCCCCCCcHHHHH
Confidence            9999999999999999999998753      6899999999988753    454332  346888888864211   133


Q ss_pred             HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCC-CChHHHHHhh
Q 020236          249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGN-VDLGVLWDSF  327 (329)
Q Consensus       249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~-~~~~~~~~~~  327 (329)
                      ++++++.+.++.|+|+|++++++++++++|+++||+||++++|++++  .+++.+.++++||+++|||+ +|++.+.+.+
T Consensus       263 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~eGi~~epssa~alaa~~~~--~~~~~~~~~~~vv~i~tg~~~k~~~~~~~~~  340 (360)
T 2d1f_A          263 EAQQQSKGRFLAASDEEILAAYHLVARVEGVFVEPASAASIAGLLKA--IDDGWVARGSTVVCTVTGNGLKDPDTALKDM  340 (360)
T ss_dssp             HHHHHHTCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHHTSSCTTCEEEEEECBBGGGCHHHHHSSC
T ss_pred             HHHHHhCCeEEEECHHHHHHHHHHHHHhcCeeECchHHHHHHHHHHH--HHhCCCCCCCeEEEEeCCCCcCCHHHHHHhc
Confidence            45778899999999999999999999999999999999999999987  55444567899999999965 8999987654

>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*

Probab=100.00  E-value=5.1e-60  Score=431.96  Aligned_cols=286  Identities=20%  Similarity=0.254  Sum_probs=250.2

Q ss_pred             hccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CC--eEEEECCchHHHHHHHHHH
Q 020236           22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IK--GVVTHSSGNHAAALSLAAK   96 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~--~vv~~ssGN~g~a~A~~a~   96 (329)
                      +.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++.   .+  +|+++|+||||+|+|++|+
T Consensus         3 i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~g~~~~vv~assGN~g~a~A~~a~   82 (304)
T 1ve1_A            3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIAA   82 (304)
T ss_dssp             GGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHHH
T ss_pred             hHHhcCCCCcEECcccccccCCEEEEEecccCCCCcHHHHHHHHHHHHHHHcCCCCCCCccEEEEeCCcHHHHHHHHHHH
Confidence            567899999999999988889999999999999999999999999998865543   15  8999999999999999999


Q ss_pred             HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHHcCCEeeCCCCCcccccc-cCcchHHHHhh
Q 020236           97 LRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEETGAVLVHPYNDGRIISG-QGTISLEFLEQ  173 (329)
Q Consensus        97 ~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g-~~t~~~Ei~~q  173 (329)
                      ++|++|++|+|++.+..|+++++.+||+|+.++++  ++++.+.+++++++++++|++||+||.++.| |.|+++||++|
T Consensus        83 ~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~n~~~~~g~~~t~~~Ei~~q  162 (304)
T 1ve1_A           83 SRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEA  162 (304)
T ss_dssp             HHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHHTCBCCCTTTCHHHHHHHHHTHHHHHHHH
T ss_pred             HcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHhcCCCEeCCCCCChhHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987  8899999999988888999999999998888 69999999999


Q ss_pred             CC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHh
Q 020236          174 VP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVR  252 (329)
Q Consensus       174 l~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~  252 (329)
                      ++ +||+||+|+|+||+++|++.++|+..|.+|||+|||.+++.+.    .++.    ..++ .+|++.+  ...+.+.+
T Consensus       163 ~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~----~g~~----~~~~-~~gl~~~--~~~~~~~~  231 (304)
T 1ve1_A          163 LEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLS----GGKM----GQHG-FQGMGPG--FIPENLDL  231 (304)
T ss_dssp             TTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTT----TCCC----CCCS-CTTSCCS--SCCTTCCG
T ss_pred             cCCCCCEEEEecCCchhHHHHHHHHHHhCCCCEEEEEecCCCcccc----CCCC----CCcc-cCCCCCC--CCChhhhh
Confidence            98 6999999999999999999999999999999999999987542    3332    1222 3666643  11233445


Q ss_pred             hcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          253 DLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       253 ~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      +++|+++.|+|+|+.++++++++++|+++||+||++++|++++  .++  +.++++||+++|| |.+|+++
T Consensus       232 ~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~--~~~--~~~~~~vv~i~tg~g~ky~~~  298 (304)
T 1ve1_A          232 SLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQV--ARE--LGPGKRVACISPDGGWKYLST  298 (304)
T ss_dssp             GGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHH--HCTTCEEEEEECBBSGGGTTS
T ss_pred             hhCCEEEEECHHHHHHHHHHHHHHhCcEEcHHHHHHHHHHHHH--HHh--cCCCCeEEEEECCCCccCCCc
Confidence            7899999999999999999999999999999999999999886  332  2367899999998 6788876

>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}

Probab=100.00  E-value=9.1e-60  Score=443.97  Aligned_cols=289  Identities=20%  Similarity=0.272  Sum_probs=253.7

Q ss_pred             HHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHHHH
Q 020236           20 KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~~a   95 (329)
                      +++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++.    ..+||++|+||||+++|++|
T Consensus       115 ~~i~~~ig~TPLv~l~~Ls~~~g~~I~lK~E~lnptGSfKdRgA~~~i~~A~~~G~l~~g~~~VV~aSsGNhG~AlA~aA  194 (430)
T 4aec_A          115 DNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGLAFIA  194 (430)
T ss_dssp             SSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHH
T ss_pred             hhhhccCCCCCeEEChhhhhhcCCeEEEEECCCCCCCCHHHHHHHHHHHHHHHcCCCCCCCcEEEEECCCHHHHHHHHHH
Confidence            56778899999999999999889999999999999999999999999998865542    26799999999999999999


Q ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHc-CCEeeCCCCCccc-ccccCcchHHHH
Q 020236           96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEET-GAVLVHPYNDGRI-ISGQGTISLEFL  171 (329)
Q Consensus        96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~-~~g~~t~~~Ei~  171 (329)
                      +.+|++|+||||++++..|+++++.+||+|+.++.  +++++.+.+++++++. +++|++||+||.+ ..||.|+++||+
T Consensus       195 a~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~~~~~~~a~~~a~el~~~~~~~~~i~~~~np~~~~aG~~T~a~EI~  274 (430)
T 4aec_A          195 ASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIW  274 (430)
T ss_dssp             HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTEEECCTTTCTHHHHHHHHTHHHHHH
T ss_pred             HHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECCCCChHHHHHHHHHHHHhcCCcEEecCCCCccHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999975  4788899999998884 7899999999996 689999999999


Q ss_pred             hhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHH
Q 020236          172 EQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPI  250 (329)
Q Consensus       172 ~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~  250 (329)
                      +|++ +||+||+|+|+||+++|++.++|+.+|+++||||||.+++.+    ..|++     ..+..+||+.+.  ..+.+
T Consensus       275 eQl~~~~D~vVvpvG~GGtlaGi~~~lk~~~p~~kVigVep~~s~~l----~~g~~-----~~~~i~Gl~~~~--~p~~l  343 (430)
T 4aec_A          275 DDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEPTESDIL----SGGKP-----GPHKIQGIGAGF--IPKNL  343 (430)
T ss_dssp             HHTTSCEEEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCGG----GTCCC-----CCCSCTTSCCSS--CCTTC
T ss_pred             HHcCCCCCEEEEeCCccHHHHHHHHHHHHhCCCCEEEEEEeCCCcHh----hCCCc-----cceeehhccCCC--CcHHH
Confidence            9996 799999999999999999999999999999999999998864    34443     223456776542  12233


Q ss_pred             HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      ..+++|+++.|+|+|++++++++++++|+++||++|++++|++++  .+++. .++++||+|+|| |.+|+++
T Consensus       344 ~~~~vd~~v~Vsd~ea~~a~r~La~~eGi~vepssGaa~aAal~l--a~~~~-~~g~~VV~Il~d~G~rylst  413 (430)
T 4aec_A          344 DQKIMDEVIAISSEEAIETAKQLALKEGLMVGISSGAAAAAAIKV--AKRPE-NAGKLIAVVFPSFGERYLST  413 (430)
T ss_dssp             CTTTCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--TTSGG-GTTCEEEEEECBBGGGGTTS
T ss_pred             HHHhCCeEEEECHHHHHHHHHHHHHHCCCEEehHHHHHHHHHHHH--HHhcC-CCcCeEEEEECCCCccccch
Confidence            457899999999999999999999999999999999999999986  55443 368999999997 7899987

>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*

Probab=100.00  E-value=2.4e-59  Score=427.05  Aligned_cols=278  Identities=17%  Similarity=0.241  Sum_probs=243.4

Q ss_pred             HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHHHH
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAAKL   97 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a~~   97 (329)
                      ++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+++.   ..+|+++|+||||+|+|++|++
T Consensus         3 ~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~i~~a~~~g~~~~g~~vv~~ssGN~g~a~A~~a~~   82 (303)
T 2v03_A            3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAAL   82 (303)
T ss_dssp             SGGGGSSCCCEEECSSSSCSSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHHHH
T ss_pred             chHhhcCCCCcEECcccccccCCEEEEEeccCCCCCCcHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHH
Confidence            5678899999999999998889999999999999999999999999998865533   2689999999999999999999


Q ss_pred             cCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHH-cCCEeeCCCCCccccc-ccCcchHHHHhh
Q 020236           98 RGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEE-TGAVLVHPYNDGRIIS-GQGTISLEFLEQ  173 (329)
Q Consensus        98 ~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~-~~~~~~~~~~n~~~~~-g~~t~~~Ei~~q  173 (329)
                      +|++|++|+|++++..|+++++.+||+|+.++.  +++++.+.+++++++ +++ |++||+||.++. ||.|+++||++|
T Consensus        83 ~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~n~~~~~~g~~t~~~Ei~~q  161 (303)
T 2v03_A           83 KGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGK-LLDQFNNPDNPYAHYTTTGPEIWQQ  161 (303)
T ss_dssp             HTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHTTSCE-ECCTTTCTHHHHHHHHTHHHHHHHH
T ss_pred             cCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCc-ccCCcCChhhHHHhcCCcHHHHHHH
Confidence            999999999999999999999999999999987  488899999999888 577 999999999765 899999999999


Q ss_pred             CC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHh
Q 020236          174 VP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVR  252 (329)
Q Consensus       174 l~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~  252 (329)
                      ++ +||+||+|+|+||+++|++.++|+.+|.+|||+|||.+++++..                .+++..+  ...+.+..
T Consensus       162 ~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~~----------------~~gl~~~--~~~~~~~~  223 (303)
T 2v03_A          162 TGGRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPG----------------IRRWPTE--YLPGIFNA  223 (303)
T ss_dssp             TTTCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTT----------------CCCCCGG--GCCTTCCG
T ss_pred             hCCCCCEEEEEeCccHhHHHHHHHHHHhCCCCEEEEEcCCCCccccc----------------CCcCCCC--CCCcccch
Confidence            98 59999999999999999999999999999999999999876542                1233221  11112234


Q ss_pred             hcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          253 DLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       253 ~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      +++|+++.|+|+|+.++++++++++|+++||+||++++|++++  .++.   ++++||+++|| |.+|+++
T Consensus       224 ~~~d~~~~V~d~e~~~a~~~l~~~~gi~~~pssa~alaa~~~~--~~~~---~~~~vv~i~tg~~~ky~~~  289 (303)
T 2v03_A          224 SLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRV--AAAN---PDAVVVAIICDRGDRYLST  289 (303)
T ss_dssp             GGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHHS---TTCEEEEEECBBSGGGGGG
T ss_pred             HHCCEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHH--HHHC---CCCeEEEEECCCCcccccc
Confidence            6789999999999999999999999999999999999999986  4432   67899999998 5788876

>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*

Probab=100.00  E-value=5.5e-59  Score=428.33  Aligned_cols=290  Identities=18%  Similarity=0.232  Sum_probs=250.6

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccC----CeEEEECCchHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAI----KGVVTHSSGNHAAALSLA   94 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~----~~vv~~ssGN~g~a~A~~   94 (329)
                      ++++...+++|||+++++|++..|.+||+|+|++|||||||||++.+++.++.+++..    .+|+++|+||||+|+|++
T Consensus         6 ~~~i~~~~~~TPL~~~~~l~~~~g~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~G~~~~~~~~vv~assGN~g~alA~a   85 (322)
T 1z7w_A            6 AKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFT   85 (322)
T ss_dssp             CSSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHH
T ss_pred             hhHHHHhcCCCCeEECccccccCCceEEEEecccCCCCchHHHHHHHHHHHHHHcCCCCCCCCEEEEeCCCHHHHHHHHH
Confidence            3567788999999999999988889999999999999999999999999988655431    689999999999999999


Q ss_pred             HHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEeeCCCCCcccc-cccCcchHHH
Q 020236           95 AKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEET-GAVLVHPYNDGRII-SGQGTISLEF  170 (329)
Q Consensus        95 a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~-~g~~t~~~Ei  170 (329)
                      |+.+|++|++|+|+++++.|+++++.+||+|+.++++  ++++.+.+++++++. +++|++||+|+.++ .||.|+++||
T Consensus        86 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~i~~~~n~~~~~~g~~t~~~Ei  165 (322)
T 1z7w_A           86 AAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEI  165 (322)
T ss_dssp             HHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHH
T ss_pred             HHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCCHHHHHHHHHHHHHhCCCeEeCCCCCChhHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999874  678899999998886 88999999999864 6899999999


Q ss_pred             HhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHH
Q 020236          171 LEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWP  249 (329)
Q Consensus       171 ~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~  249 (329)
                      ++|++ +||+||+|+|+||+++|++.++|+..|.++|++|||.+++.+.    .+++.    .. ..+|++.+  ...+.
T Consensus       166 ~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigve~~~~~~~~----~~~~~----~~-~~~gl~~~--~~~~~  234 (322)
T 1z7w_A          166 WKGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAILS----GGKPG----PH-KIQGIGAG--FIPSV  234 (322)
T ss_dssp             HHHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGGG----TCCCC----CC-SCTTSCCS--SCCTT
T ss_pred             HHHhcCCCCEEEEecCccHhHHHHHHHHHHcCCCCEEEEEecCCCcccc----CCCCC----Cc-ccCcCcCC--CCChh
Confidence            99996 7999999999999999999999999999999999999987653    34321    11 23565543  12233


Q ss_pred             HHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       250 ~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      +..+++|.++.|+|+|++++++++++++|+++||+||++++|+++.  .+++. .++++||+++|| |.+|+++
T Consensus       235 ~~~~~~~~~~~V~d~e~~~a~~~l~~~~gi~~~pssga~~aaa~~~--~~~~~-~~~~~vv~i~tg~g~k~~~~  305 (322)
T 1z7w_A          235 LNVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKL--AQRPE-NAGKLFVAIFPSFGERYLST  305 (322)
T ss_dssp             CCGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHH--HTSGG-GTTCEEEEEECBBGGGGTTS
T ss_pred             hhHHhCCEEEEECHHHHHHHHHHHHHHcCceEchhHHHHHHHHHHH--HHhcC-CCCCeEEEEECCCCcccccc
Confidence            4567899999999999999999999999999999999999999876  44432 367899999998 5788775

>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A

Probab=100.00  E-value=4.8e-59  Score=427.23  Aligned_cols=291  Identities=20%  Similarity=0.257  Sum_probs=247.6

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a   95 (329)
                      ++++.+.+++|||+++++|++..|.+||+|+|++|||||||||++.+++..+.+++.   ..+|+++|+||||+|+|++|
T Consensus         7 ~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~alA~~a   86 (313)
T 2q3b_A            7 AEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLIKPDTIILEPTSGNTGIALAMVC   86 (313)
T ss_dssp             CSSGGGGSCCCCEEECSSSCTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECSSHHHHHHHHHH
T ss_pred             hhhHHHhcCCCceEECcccccccCcEEEEEehhcCCCCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHH
Confidence            356778899999999999988888999999999999999999999999998865533   26799999999999999999


Q ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHcCC-EeeCCCCCccccc-ccCcchHHHH
Q 020236           96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEETGA-VLVHPYNDGRIIS-GQGTISLEFL  171 (329)
Q Consensus        96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~~-~~~~~~~n~~~~~-g~~t~~~Ei~  171 (329)
                      +.+|++|++|||++++..|+++++.+||+|+.++.  +++++.+.+++++++.++ ++++||+||.++. ||.|+++||+
T Consensus        87 ~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~~~~~~~~t~~~Ei~  166 (313)
T 2q3b_A           87 AARGYRCVLTMPETMSLERRMLLRAYGAELILTPGADGMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVW  166 (313)
T ss_dssp             HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEECCCTTTCTHHHHHHHHTHHHHHH
T ss_pred             HHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCCCCHHHHHHHHHHHHHhCCCEEeCCCCCChhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987  478899999999888766 8899999999875 5999999999


Q ss_pred             hhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHH
Q 020236          172 EQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPI  250 (329)
Q Consensus       172 ~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~  250 (329)
                      +|++ +||+||+|+|+||+++|++.++|+.+|.+|||+|||.+++.+.    .++.     ..+..+|+..+  ...+.+
T Consensus       167 ~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vi~ve~~~~~~~~----~~~~-----g~~~~~g~~~~--~~~~~~  235 (313)
T 2q3b_A          167 RDTDGKVDIVVAGVGTGGTITGVAQVIKERKPSARFVAVEPAASPVLS----GGQK-----GPHPIQGIGAG--FVPPVL  235 (313)
T ss_dssp             HHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTSCTTT----TCCC-----CCCCCTTSCCS--SCCTTC
T ss_pred             HHcCCCCCEEEEccCcchhHHHHHHHHHHhCCCCEEEEEeeCCCcccc----CCCC-----CCcccCCcCCC--CCChhh
Confidence            9997 7999999999999999999999999999999999999997653    1111     12344566543  112223


Q ss_pred             HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHH
Q 020236          251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVL  323 (329)
Q Consensus       251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~  323 (329)
                      ....+|+++.|+|+|++++++++++++|+++||+||++++|+++.  .+++.. ++++||+++|| |.+|++++
T Consensus       236 ~~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~--~~~~~~-~~~~vv~v~~~~g~ky~~~~  306 (313)
T 2q3b_A          236 DQDLVDEIITVGNEDALNVARRLAREEGLLVGISSGAATVAALQV--ARRPEN-AGKLIVVVLPDFGERYLSTP  306 (313)
T ss_dssp             CGGGCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHH--HTCGGG-TTCEEEEEECBBSGGGC---
T ss_pred             hHhhccEEEEECHHHHHHHHHHHHHHcCceEchHHHHHHHHHHHH--HHhcCC-CCCEEEEEECCCCcccccch
Confidence            356789999999999999999999999999999999999999986  444322 67889988886 78998873

>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J protein structure initiative, joint center for structural G transferase; 1.80A {Thermotoga maritima} SCOP: c.79.1.1 PDB: 3fca_A*

Probab=100.00  E-value=6.8e-59  Score=424.10  Aligned_cols=281  Identities=23%  Similarity=0.324  Sum_probs=243.6

Q ss_pred             ccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc-CCeEEEECCchHHHHHHHHHHHcCCC
Q 020236           23 SLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA-IKGVVTHSSGNHAAALSLAAKLRGIP  101 (329)
Q Consensus        23 ~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~-~~~vv~~ssGN~g~a~A~~a~~~G~~  101 (329)
                      .+.+++|||+++++|+    .+||+|+|++|||||||||++.+++..+.+++. .++|+++|+||||+|+|++|+.+|++
T Consensus        15 ~~~~~~TPL~~l~~l~----~~v~~K~E~~~ptGSfK~R~a~~~l~~a~~~g~~~~~vv~aSsGN~g~a~A~aa~~~G~~   90 (303)
T 1o58_A           15 ERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKRGHR   90 (303)
T ss_dssp             HHHSCCCCEEECTTTC----TTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHHTCC
T ss_pred             hhccCCCCeEECccCC----ceEEEEecCCCCCCChHHHHHHHHHHHHHHcCCCCCCEEEECchHHHHHHHHHHHHcCCc
Confidence            4568999999999876    689999999999999999999999998865543 35799999999999999999999999


Q ss_pred             EEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHHcCCEeeCCCCCcccc-cccCcchHHHHhhCCC-C
Q 020236          102 AYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEETGAVLVHPYNDGRII-SGQGTISLEFLEQVPL-L  177 (329)
Q Consensus       102 ~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~n~~~~-~g~~t~~~Ei~~ql~~-~  177 (329)
                      |+||+|+++++.|+++++.+||+|+.++++  ++++.+.+++++++.+++|++||+||.++ .||.|+++||++|++. |
T Consensus        91 ~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q~~~~~  170 (303)
T 1o58_A           91 VILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQI  170 (303)
T ss_dssp             EEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHCCBCCCTTTCHHHHHHHHHTHHHHHHHHTTTCC
T ss_pred             EEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhcCeEeCCCCCCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            999999999999999999999999999986  88999999999888888899999999876 4789999999999984 9


Q ss_pred             CEEEEeCCCChHHHHHHHHHHHhCCC-CEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCC
Q 020236          178 DTIIVPISGGGLISGVALAAKSIKPA-IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVD  256 (329)
Q Consensus       178 d~vv~~~GtGg~~~Gi~~~~k~~~~~-~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~  256 (329)
                      |+||+|+|+||+++|++.++|+.+|. +|||+|||.+++.+.    .++.     ..+..+|++.+  ...+.+...++|
T Consensus       171 d~vvvpvG~GG~~~Gi~~~~k~~~p~~~~vigve~~~~~~~~----~g~~-----~~~~~~gi~~~--~~~~~~~~~~~d  239 (303)
T 1o58_A          171 DAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLS----GGQP-----GKHAIQGIGAG--FVPKILDRSVID  239 (303)
T ss_dssp             SEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTT----TCCC-----CCCCCTTSCCS--SCCTTCCGGGCC
T ss_pred             CEEEEeeCCcccHHHHHHHHHHhCCCCCEEEEEecCCCcccc----CCCC-----CCeecCcCCCC--CcCHHHHHHhCC
Confidence            99999999999999999999999999 999999999997654    2332     12344566543  112233456889


Q ss_pred             cEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          257 DVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       257 ~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      .++.|+|+|++++++++++++|+++||+||++++|++++  .++  +.++++||+++|| |.+|+++
T Consensus       240 ~~~~V~d~e~~~a~~~l~~~~gi~~epssa~alaa~~~~--~~~--~~~~~~vv~i~tg~g~ky~~~  302 (303)
T 1o58_A          240 EVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKV--AQK--LGPDARVVTVAPDHAERYLSI  302 (303)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHT--SCTTCCEEEEECBBGGGCTTT
T ss_pred             eEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHH--HHH--cCCCCEEEEEECCCCcccccC
Confidence            999999999999999999999999999999999999986  443  3468899999998 5788875

>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}

Probab=100.00  E-value=3e-59  Score=427.61  Aligned_cols=289  Identities=21%  Similarity=0.274  Sum_probs=229.1

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a   95 (329)
                      ++++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++.   ..+|+++|+||||+|+|++|
T Consensus         5 ~~~i~~~~~~TPL~~l~~l~~~~g~~i~~K~E~~~ptgSfK~R~a~~~l~~a~~~g~~~~g~~vv~assGN~g~a~A~~a   84 (308)
T 2egu_A            5 VNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGKLKPGDTIVEPTSGNTGIGLAMVA   84 (308)
T ss_dssp             CSCGGGGSSCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCCTTCEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCeEECCcccccCCCEEEEEecccCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHHHH
Confidence            345778899999999999988889999999999999999999999999998865433   16899999999999999999


Q ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHHcCCEeeCCCCCccc-ccccCcchHHHHh
Q 020236           96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEETGAVLVHPYNDGRI-ISGQGTISLEFLE  172 (329)
Q Consensus        96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~  172 (329)
                      +.+|++|++|||++.+..|+++++.+||+|+.++.+  ++++.+.+++++++.++++++||+||.+ ..||.|+++||++
T Consensus        85 ~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~  164 (308)
T 2egu_A           85 AAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGAQGMRGAIAKAEELVREHGYFMPQQFKNEANPEIHRLTTGKEIVE  164 (308)
T ss_dssp             HHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHCCBCC--------------CHHHHHHH
T ss_pred             HHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHHCcCCcCCcCCChhHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999874  7888999999988877788999999986 4799999999999


Q ss_pred             hCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHH
Q 020236          173 QVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV  251 (329)
Q Consensus       173 ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~  251 (329)
                      |++ +||+||+|+|+||+++|++.++|+.+|.+|||+|||.+++.+..    +...     .+..+|+..+.  ..+.+.
T Consensus       165 q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~~~~~vigve~~~~~~~~~----~~~~-----~~~~~g~~~~~--~~~~~~  233 (308)
T 2egu_A          165 QMGDQLDAFVAGVGTGGTITGAGKVLREAYPNIKIYAVEPADSPVLSG----GKPG-----PHKIQGIGAGF--VPDILD  233 (308)
T ss_dssp             HHTTCCCEEEEEGGGTHHHHHHHHHHHHHCTTCEEEEEEECC----------------------------------CCCC
T ss_pred             HcCCCCCEEEEeeCCchhHHHHHHHHHHhCCCCEEEEEEeCCCccccC----CCCC-----CcccCccCCCC--CCHhHH
Confidence            998 69999999999999999999999999999999999999976542    2111     13335555321  111223


Q ss_pred             hhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          252 RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       252 ~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      ..++|+++.|+|+|+.++++++++++|+++||+||++++|++++  .+++  .++++||+++|| |.+|+++
T Consensus       234 ~~~~d~~~~v~d~e~~~a~~~l~~~~gi~~epssa~a~aa~~~~--~~~~--~~~~~vv~i~tg~g~ky~~~  301 (308)
T 2egu_A          234 TSIYDGVITVTTEEAFAAARRAAREEGILGGISSGAAIHAALKV--AKEL--GKGKKVLAIIPSNGERYLST  301 (308)
T ss_dssp             CCSCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHHH--CTTCEEEEEECBBGGGGTTS
T ss_pred             HHhcCeEEEECHHHHHHHHHHHHHHhCceEcHHHHHHHHHHHHH--HHhc--CCCCeEEEEECCCCcccccc
Confidence            56789999999999999999999999999999999999999986  4433  367899999998 6889886

>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*

Probab=100.00  E-value=1.7e-58  Score=427.97  Aligned_cols=289  Identities=20%  Similarity=0.252  Sum_probs=249.6

Q ss_pred             HHHhccccCCCCCccchhhhh----hcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNS----MSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAAL   91 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~----~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~   91 (329)
                      ++++.+.+++|||+++++|++    ..|.+||+|+|++|||||||||++.+++..+.+++.   ..+||++||||||+|+
T Consensus        14 ~~~i~~~~g~TPL~~~~~l~~~~~~~~g~~v~~K~E~~~ptGSfKdR~a~~~l~~a~~~g~~~~g~~vv~aSsGN~g~al   93 (343)
T 2pqm_A           14 YHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNIVYQAIKDGRLKPGMEIIESTSGNTGIAL   93 (343)
T ss_dssp             ESSGGGGSSCCCEEECCGGGCSTTSCTTCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTSSCTTCEEEEECSSHHHHHH
T ss_pred             HHHHHhhcCCCCeEECCccccccccccCcEEEEEeccCCCCCChHHHHHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHH
Confidence            466788899999999999988    778999999999999999999999999998865543   1589999999999999


Q ss_pred             HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHHHHHHHHHHHHHcC-C-EeeCCCCCccc-ccccCcc
Q 020236           92 SLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHSRESVASKVLEETG-A-VLVHPYNDGRI-ISGQGTI  166 (329)
Q Consensus        92 A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~a~~~~~~~~-~-~~~~~~~n~~~-~~g~~t~  166 (329)
                      |++|+.+|++|+||||++++..|+++++.+||+|+.+++  +++++.+.+++++++.+ . ++++||+||.+ ..||.++
T Consensus        94 A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~a~~~~~~~~~~y~~~~~~~n~~n~~~g~~t~  173 (343)
T 2pqm_A           94 CQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHHYTA  173 (343)
T ss_dssp             HHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHSTTTEEECCTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEECCCCCChhHHHHHHHHH
Confidence            999999999999999999999999999999999999987  47889999999988865 4 77899999985 4789999


Q ss_pred             hHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCc
Q 020236          167 SLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD  245 (329)
Q Consensus       167 ~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~  245 (329)
                      + ||++|++ +||+||+|+|+||+++|++.++|+.+|.+|||+|||.+++.+.    .++.     ..+..+|++.+.  
T Consensus       174 ~-Ei~~q~~~~~d~vvvpvG~GG~~~Gi~~~~k~~~p~~~vigVe~~~~~~~~----~~~~-----~~~~~~gl~~~~--  241 (343)
T 2pqm_A          174 N-EIWEDTDGEVDIVVSAVGTSGTVIGVAEKLKEKKKGIKIIAVEPEESAVLE----GKAK-----GPHGIQGIGAGF--  241 (343)
T ss_dssp             H-HHHHHTTTCEEEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCTTT----TCCC-----CCCCCTTCCCSS--
T ss_pred             H-HHHHHcCCCCCEEEEecCCchhHHHHHHHHHHcCCCCEEEEEecCCCcccc----cCCC-----CCeecCccCCCC--
Confidence            9 9999998 6999999999999999999999999999999999999987543    2221     124456665431  


Q ss_pred             ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       246 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      ..+.+...++|+++.|+|+|++++++++++++|+++||+||++++|+++.  .+++ ..++++||+++|| |.+|+++
T Consensus       242 ~~~~~~~~~~d~~~~Vsd~e~~~a~~~l~~~~gi~~epssa~alaa~~~~--~~~~-~~~~~~vv~i~tg~g~ky~~~  316 (343)
T 2pqm_A          242 IPDIYKKEFVDEIIPIKTQDAWKMARAVVKYDGIMCGMSSGAAILAGLKE--AEKP-ENEGKTIVIIVPSCGERYLST  316 (343)
T ss_dssp             CCTTCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HTSG-GGTTCEEEEEECBBGGGGTTS
T ss_pred             CCHHHHHHhCCeEEEECHHHHHHHHHHHHHHhCCeEchhHHHHHHHHHHH--HHhc-CCCCCeEEEEEcCCCccccch
Confidence            12334467889999999999999999999999999999999999999986  4443 2368899999998 5788876

>4d9b_A D-cysteine desulfhydrase; fold type II PLP-dependent enzyme or tryptophan synthase BET like family, PLP dependent enzyme, lyase; HET: PMP; 1.67A {Salmonella typhimurium} PDB: 4d96_A* 4d9c_A* 4d9e_A* 4d9f_A* 4d97_A* 4d8w_A* 4d8u_A* 4d8t_A* 4d92_A* 4d99_A*

Probab=100.00  E-value=2.6e-59  Score=433.47  Aligned_cols=303  Identities=16%  Similarity=0.154  Sum_probs=259.2

Q ss_pred             HHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCC--CCccchhhHHHHHhcCchhccCCeEEEEC--CchHH
Q 020236           13 SSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQK--GGAFKFRGASNAVLSLDEDQAIKGVVTHS--SGNHA   88 (329)
Q Consensus        13 ~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~np--tGS~KdR~a~~~l~~a~~~~~~~~vv~~s--sGN~g   88 (329)
                      .+..++++++...+++|||+++++|++.+|.+||+|+|++||  +||||||++.+++..+.+ .+.++||++|  +||||
T Consensus        17 ~~~~~a~~ri~~~~~~TPL~~~~~l~~~~g~~v~~K~E~l~p~~~gs~K~R~~~~~l~~a~~-~G~~~vv~~s~tsGN~g   95 (342)
T 4d9b_A           17 LHHLTRFPRLEFIGAPTPLEYLPRLSDYLGREIYIKRDDVTPIAMGGNKLRKLEFLVADALR-EGADTLITAGAIQSNHV   95 (342)
T ss_dssp             TGGGGGSCCCCSSCSCCCEEECHHHHHHHTSCEEEEEGGGCSSTTCCTHHHHHHHHHHHHHH-TTCCEEEEEEETTCHHH
T ss_pred             cchhccCCcccccCCCCceeEhhhhHHhhCCEEEEEeCCCCCCCCcchHHHhHHHHHHHHHH-cCCCEEEEcCCcccHHH
Confidence            344567788999999999999999999889999999999999  999999999999998754 4668899985  79999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCCCCH--------HHHHHHHHcCCEEEEECCC--HHHHH-HHHHHHHHHcCCEeeC--CCC
Q 020236           89 AALSLAAKLRGIPAYIVIPKNAPK--------CKVENVVRYGGQVIWSEAT--MHSRE-SVASKVLEETGAVLVH--PYN  155 (329)
Q Consensus        89 ~a~A~~a~~~G~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~~--~~~~~-~~a~~~~~~~~~~~~~--~~~  155 (329)
                      +|+|++|+.+|++|++|||++.+.        .|+++++.+||+|+.++++  .+++. +.++++.++.+..|+.  ++.
T Consensus        96 ~alA~aa~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~  175 (342)
T 4d9b_A           96 RQTAAVAAKLGLHCVALLENPIGTTAENYLTNGNRLLLDLFNTQIEMCDALTDPDAQLQTLATRIEAQGFRPYVIPVGGS  175 (342)
T ss_dssp             HHHHHHHHHHTCEEEEEEECTTCCCCHHHHHSHHHHHHHHTTCEEEECSCCSSHHHHHHHHHHHHHHTTCCEEECCGGGC
T ss_pred             HHHHHHHHHhCCcEEEEEeCCCCCccccccccchHHHHHHCCCEEEEECchhhHHHHHHHHHHHHHhcCCceEEeCCCCC
Confidence            999999999999999999998773        5899999999999999874  34444 4566777666554544  456


Q ss_pred             CcccccccCcchHHHHhhCC---CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCC
Q 020236          156 DGRIISGQGTISLEFLEQVP---LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET  232 (329)
Q Consensus       156 n~~~~~g~~t~~~Ei~~ql~---~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~  232 (329)
                      |+...+||.|++.||++|++   .||+||+|+|||||++|++.++|+.+|.++||+|||.+++++..+...      +..
T Consensus       176 n~~~~~G~~t~~~EI~~q~~~~~~~d~vv~~vGtGGt~aGi~~~~k~~~~~~~vigVe~~~~~~~~~~~~~------~~~  249 (342)
T 4d9b_A          176 SALGAMGYVESALEIAQQCEEVVGLSSVVVASGSAGTHAGLAVGLEHLMPDVELIGVTVSRSVAEQKPKVI------ALQ  249 (342)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTTTCCCCEEEEEESSSHHHHHHHHHHHHHCTTSEEEEEESSSCHHHHHHHHH------HHH
T ss_pred             ChHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCHHHHHHHHHHHhhCCCCeEEEEEecCcHHHHHHHHH------HHH
Confidence            78788999999999999997   799999999999999999999999999999999999999887665321      113


Q ss_pred             CccccccccCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeEEE
Q 020236          233 NTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKIGI  311 (329)
Q Consensus       233 ~t~~~gl~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~vv~  311 (329)
                      +++++|++.+ +...|.++++++|+++.|+|+|+++++++|++++||++||+ ||++++|++++  .+++.+.++++||+
T Consensus       250 ~t~a~gl~~~-~~~~~~~~~~~~d~~~~V~d~e~~~a~~~l~~~~gi~~epsYsa~a~aa~~~~--~~~~~~~~~~~Vv~  326 (342)
T 4d9b_A          250 QAIAGQLALT-ATADIHLWDDYFAPGYGVPNDAGMEAVKLLASLEGVLLDPVYTGKAMAGLIDG--ISQKRFNDDGPILF  326 (342)
T ss_dssp             HHHHHHTTCC-CCCCCEEECTTSTTCTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHH--HHHTCSSSSSCEEE
T ss_pred             HHHHHHcCCC-CccceEEEecCCCceEecCCHHHHHHHHHHHHhcCccccccHHHHHHHHHHHH--HHcCCCCCCCeEEE
Confidence            4677777754 55667777889999999999999999999999999999999 99999999987  55555667899999


Q ss_pred             EeCCCCCChHHHHH
Q 020236          312 VLSGGNVDLGVLWD  325 (329)
Q Consensus       312 v~tgg~~~~~~~~~  325 (329)
                      |+|||+.++..+.+
T Consensus       327 i~tGGn~~~~~~~~  340 (342)
T 4d9b_A          327 IHTGGAPALFAYHP  340 (342)
T ss_dssp             EECCCTTHHHHHSS
T ss_pred             EECCCccchhhccc
Confidence            99999999987754

>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme, S-adenosyl-methionine, allostery; 2.25A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*

Probab=100.00  E-value=3.1e-57  Score=436.04  Aligned_cols=299  Identities=19%  Similarity=0.219  Sum_probs=250.0

Q ss_pred             ccCCCCCccchhhhhh-cC-CeEEEEecCCCCCCccchhhHHHHHhcCch---hc-cCCeEEEECCchHHHHHHHHHHHc
Q 020236           25 YIHKTPVLSSETLNSM-SG-RSLFFKCECFQKGGAFKFRGASNAVLSLDE---DQ-AIKGVVTHSSGNHAAALSLAAKLR   98 (329)
Q Consensus        25 ~i~~TPl~~~~~l~~~-~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~---~~-~~~~vv~~ssGN~g~a~A~~a~~~   98 (329)
                      ++++|||+++++|++. +| .+||+|+|++|||||||||++.+++..+..   ++ +..+|+++||||||+|+|++|+++
T Consensus       127 ~~g~TPLv~l~~L~~~~lg~~~l~~K~E~~nPTGSFKDRga~~~~~~l~~~~~~~~g~~~Vv~aSsGNtG~AlA~~a~~~  206 (486)
T 1e5x_A          127 FEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASA  206 (486)
T ss_dssp             CCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHHHH
T ss_pred             cCCCCCcEECcccchhhcCCCcEEEeeccCCCccCHHHHHHHHHHHHHHHHHHcCCCCeEEEEcCCCHHHHHHHHHHHHc
Confidence            4678999999999988 88 599999999999999999999888766532   33 367899999999999999999999


Q ss_pred             CCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC--
Q 020236           99 GIPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP--  175 (329)
Q Consensus        99 G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~--  175 (329)
                      |++|+||+|++ ++..|+.+|+.+||+|+.++++++++.+.+++++++.++++++++ ||.+++||.|+++||++|++  
T Consensus       207 Gi~~~I~~P~~~~s~~k~~~~~~~GA~vi~v~g~~dd~~~~a~~l~~~~~~~~vns~-N~~~i~gq~t~~~Ei~~ql~~~  285 (486)
T 1e5x_A          207 GIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIYLANSL-NSLRLEGQKTAAIEILQQFDWQ  285 (486)
T ss_dssp             TCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSCEEEGGGS-HHHHHHHHTHHHHHHHHHTTSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCEEEEECCCHHHHHHHHHHHHhcCCEEEeCCC-CHHHHHHHHHHHHHHHHHcCCC
Confidence            99999999997 999999999999999999999999999999999988888889887 89999999999999999997  


Q ss_pred             CCCEEEEeCCCChHHHHHHHHHHHhC------CCCEEEEEecCCCchHHHHHHcCC--eeecCCCCccccccccCCCccc
Q 020236          176 LLDTIIVPISGGGLISGVALAAKSIK------PAIRILAAEPIGANDAAQSKAAGR--IITLLETNTVADGLRAFLGDLT  247 (329)
Q Consensus       176 ~~d~vv~~~GtGg~~~Gi~~~~k~~~------~~~~vi~v~~~~~~~~~~~~~~g~--~~~~~~~~t~~~gl~~~~~~~~  247 (329)
                      .||+||+|+|+||+++|++.+|++..      |.+++|+||+.++++++++++.|+  ..+.+..+|+++||+.+. +.+
T Consensus       286 ~~D~vvvpvG~GG~i~Gi~~a~k~~~~~Gli~p~~rvi~Ve~~~~~~l~~~~~~G~~~~~~~~~~~t~a~gi~i~~-p~~  364 (486)
T 1e5x_A          286 VPDWVIVPGGNLGNIYAFYKGFKXCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGD-PVS  364 (486)
T ss_dssp             CCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC-----------------CC
T ss_pred             CCCEEEEeCCcHHHHHHHHHHHHHhhhhccCCCCCEEEEEecCCCchHHHHHHcCCCccccCCCCCeeCccccCCC-Ccc
Confidence            59999999999999999999998764      789999999999999999999984  344455678999998652 334


Q ss_pred             HHHH----hhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCC-CCChHH
Q 020236          248 WPIV----RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG-NVDLGV  322 (329)
Q Consensus       248 ~~~~----~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg-~~~~~~  322 (329)
                      |+.+    +++.+.++.|+|+|++++++ +++++|+++||+||++++|++++  .+++.+.++++||+++||| .+|.+.
T Consensus       365 ~~~~~~~~~~~~g~~~~Vsd~e~~~ai~-l~~~eGi~~ePssA~alaa~~~~--~~~g~~~~~~~vV~i~Tg~~~k~~~~  441 (486)
T 1e5x_A          365 IDRAVYALKKCNGIVEEATEEELMDAMA-QADSTGMFICPHTGVALTALFKL--RNQGVIAPTDRTVVVSTAHGLKFTQS  441 (486)
T ss_dssp             CHHHHHHHHHTTCEEEEECHHHHHHHHH-HHHHTTCCCCHHHHHHHHHHHHH--HHTTSSCTTCCEEEEECBCGGGGHHH
T ss_pred             HHHHHHHHhccCCeEEEECHHHHHHHHH-HHHHCCeEEChhHHHHHHHHHHH--HHhcCCCCCCeEEEEeCCCCccCHHH
Confidence            4433    33334499999999999999 67889999999999999999987  5666566789999999985 789999


Q ss_pred             HHHhhh
Q 020236          323 LWDSFR  328 (329)
Q Consensus       323 ~~~~~~  328 (329)
                      +.+.++
T Consensus       442 v~~~~~  447 (486)
T 1e5x_A          442 KIDYHS  447 (486)
T ss_dssp             HHHHHT
T ss_pred             HHHHhc
Confidence            888654

>1f2d_A 1-aminocyclopropane-1-carboxylate deaminase; carbon-carbon L open twisted alpha/beta, lyase; HET: PLP; 2.00A {Williopsis saturnus} SCOP: c.79.1.1 PDB: 1j0e_A* 1j0d_A* 1j0c_A*

Probab=100.00  E-value=4.6e-59  Score=432.09  Aligned_cols=300  Identities=15%  Similarity=0.132  Sum_probs=255.5

Q ss_pred             HHhccccCCCCCccchhhhhhc-C-CeEEEEecCCC-C--CCccchhhHHHHHhcCchhccCCeEEE--ECCchHHHHHH
Q 020236           20 KRISLYIHKTPVLSSETLNSMS-G-RSLFFKCECFQ-K--GGAFKFRGASNAVLSLDEDQAIKGVVT--HSSGNHAAALS   92 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~-g-~~i~~K~E~~n-p--tGS~KdR~a~~~l~~a~~~~~~~~vv~--~ssGN~g~a~A   92 (329)
                      +++...+++|||+++++|++.+ | .+||+|+|++| |  +||||||++.+++.++.++ +.++||+  +|+||||+|+|
T Consensus         7 ~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~Gs~K~R~a~~~l~~a~~~-g~~~vv~~G~ssGN~g~alA   85 (341)
T 1f2d_A            7 AKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEG-DYTHLVSIGGRQSNQTRMVA   85 (341)
T ss_dssp             CCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHS-CCSEEEEEEETTCHHHHHHH
T ss_pred             CCcccCCCCCcceeHHhHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHc-CCCEEEEcCCcchHHHHHHH
Confidence            3567789999999999999888 8 89999999999 9  9999999999999988644 5679999  99999999999


Q ss_pred             HHHHHcCCCEEEEEcCCCC-----HH------HHHHHHHcCCEEEEECCCHH-----HHHHHHHHHHHHcC--CEeeCC-
Q 020236           93 LAAKLRGIPAYIVIPKNAP-----KC------KVENVVRYGGQVIWSEATMH-----SRESVASKVLEETG--AVLVHP-  153 (329)
Q Consensus        93 ~~a~~~G~~~~i~~p~~~~-----~~------~~~~~~~~Ga~v~~~~~~~~-----~~~~~a~~~~~~~~--~~~~~~-  153 (329)
                      ++|+.+|++|++|||+..+     +.      |+++++.+||+|+.++++.+     .+.+.+++++++.+  +++++| 
T Consensus        86 ~~a~~~G~~~~iv~p~~~~~~~~~~~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~i~~~~  165 (341)
T 1f2d_A           86 ALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGC  165 (341)
T ss_dssp             HHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECGGG
T ss_pred             HHHHHhCCceEEEeccCCCccccccccccccccHHHHHhCCCEEEEeCCccchhHHHHHHHHHHHHHhcCCcEEEeCCCc
Confidence            9999999999999999887     34      99999999999999987543     67778888887754  445689 


Q ss_pred             CCCcccccccCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeec
Q 020236          154 YNDGRIISGQGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITL  229 (329)
Q Consensus       154 ~~n~~~~~g~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~  229 (329)
                      |+||.++.||.|++.||++|++    .||+||+|+|||||++|++.+|++.+|.++||+|||.+++++...-    ....
T Consensus       166 ~~np~~~~G~~t~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~~~~~~~~~~~----~~~~  241 (341)
T 1f2d_A          166 SEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQ----TLRI  241 (341)
T ss_dssp             TTSTTTTTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHH----HHHH
T ss_pred             CCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEecCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHH----HHHH
Confidence            9999999999999999999996    7999999999999999999999999999999999999998776431    1011


Q ss_pred             CCCCccccccccCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCe
Q 020236          230 LETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKK  308 (329)
Q Consensus       230 ~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~  308 (329)
                        ..+++++++.+.+...|.+.++++|+++.|+|+|+++++++|++++||++||+ ||+++++++++  .+++.+.++++
T Consensus       242 --~~~~~~~ig~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~egi~~ep~~sa~alaa~~~~--~~~~~~~~~~~  317 (341)
T 1f2d_A          242 --ANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIAL--IKEDYFKPGAN  317 (341)
T ss_dssp             --HHHHHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHH--HHTTCSCTTCE
T ss_pred             --HHHHHHHcCCCCCcCeEEEecCcccceEecCCHHHHHHHHHHHHHcCCccccchHHHHHHHHHHH--HHhCCCCCCCe
Confidence              12344455432111345556788999999999999999999999999999996 99999999987  56655667899


Q ss_pred             EEEEeCCCCCChHHHHHhhh
Q 020236          309 IGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       309 vv~v~tgg~~~~~~~~~~~~  328 (329)
                      ||+|+|||+.++..+.+.++
T Consensus       318 Vv~i~tGG~~~~~~~~~~~~  337 (341)
T 1f2d_A          318 VLYVHLGGAPALSAYSSFFP  337 (341)
T ss_dssp             EEEEECCCGGGGGGGGGGCC
T ss_pred             EEEEECCchHHhhhhHHHhc
Confidence            99999999999988877653

>1j0a_A 1-aminocyclopropane-1-carboxylate deaminase; PLP dependent, lyase; HET: PLP; 2.50A {Pyrococcus horikoshii} SCOP: c.79.1.1 PDB: 1j0b_A*

Probab=100.00  E-value=3.3e-58  Score=423.68  Aligned_cols=297  Identities=16%  Similarity=0.119  Sum_probs=253.4

Q ss_pred             HHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCC--CCccchhhHHHHHhcCchhccCCeEEEE--CCchHHHHH
Q 020236           16 KEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQK--GGAFKFRGASNAVLSLDEDQAIKGVVTH--SSGNHAAAL   91 (329)
Q Consensus        16 ~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~np--tGS~KdR~a~~~l~~a~~~~~~~~vv~~--ssGN~g~a~   91 (329)
                      ...++++...+++|||+++++|++..|.+||+|+|++||  +||||||++.+++..+.++ +.++||++  |+||||+|+
T Consensus         9 l~~~~~i~~~~~~TPL~~~~~l~~~~g~~i~~K~E~~~p~~~gs~K~R~~~~~i~~a~~~-G~~~vv~~G~ssGN~g~al   87 (325)
T 1j0a_A            9 LAKFPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSK-GADVVITVGAVHSNHAFVT   87 (325)
T ss_dssp             HTTCCCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHT-TCSEEEEECCTTCHHHHHH
T ss_pred             hccCCCcccccCCCCceEhhhhhhhhCCEEEEEecccCCCCCCchHHHHHHHHHHHHHHc-CCCEEEEcCCcchHHHHHH
Confidence            344556778899999999999998889999999999999  8999999999999988554 56789997  999999999


Q ss_pred             HHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCCHH-----HHHHHHHHHHHHcCC--EeeCCCCCccccccc
Q 020236           92 SLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEATMH-----SRESVASKVLEETGA--VLVHPYNDGRIISGQ  163 (329)
Q Consensus        92 A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~-----~~~~~a~~~~~~~~~--~~~~~~~n~~~~~g~  163 (329)
                      |++|+.+|++|++|||++. +..|+++++.+||+|+.++++++     ++.+.+++++++.+.  ++.++++|+....||
T Consensus        88 A~~a~~~G~~~~iv~p~~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~n~~~~~g~  167 (325)
T 1j0a_A           88 GLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGY  167 (325)
T ss_dssp             HHHHHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHHHTHH
T ss_pred             HHHHHHhCCcEEEEECCCCCCCchHHHHHHCCCEEEEeCcchhhhhhHHHHHHHHHHHHcCCceEEEcCCCCCHHHHHHH
Confidence            9999999999999999999 99999999999999999998653     567778888777654  345677899999999


Q ss_pred             CcchHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC
Q 020236          164 GTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF  242 (329)
Q Consensus       164 ~t~~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~  242 (329)
                      .|++.||++|++ +||+||+|+|||||++|++.++|+.+|++|||+|||.+++++..+..          .++++++..+
T Consensus       168 ~t~~~Ei~~q~~~~~d~vv~~vGtGGt~~Gi~~~lk~~~~~~~vigVe~~~~~~~~~~~~----------~t~~~~~~~~  237 (325)
T 1j0a_A          168 VRAVGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKL----------DNLIKEAAEL  237 (325)
T ss_dssp             HHHHHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHH----------HHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCCEEEEeCCchHhHHHHHHHHHhcCCCceEEEEEecCchHHHHHHH----------HHHHHHHHHh
Confidence            999999999997 79999999999999999999999999999999999999988765431          1333333221


Q ss_pred             ---CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeEEEEeCCCCC
Q 020236          243 ---LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNV  318 (329)
Q Consensus       243 ---~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~  318 (329)
                         .+...+.+.++++|+ +.|+|+|+++++++|++++||++||+ ||+++++++++  .+++.+  +++||+|+|||+.
T Consensus       238 ~g~~~~~~~~~~~~~~~~-~~v~d~e~~~a~~~l~~~~gi~~ep~ssa~a~aa~~~~--~~~~~~--~~~Vv~i~tGG~~  312 (325)
T 1j0a_A          238 LGVKVEVRPELYDYSFGE-YGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDL--ARKGEL--GEKILFIHTGGIS  312 (325)
T ss_dssp             TTCCCCSCCEEEECSTTS-TTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHH--HHTTCS--CSEEEEEECCCHH
T ss_pred             cCCCCCCCcEEecCcccC-CCCCCHHHHHHHHHHHHhhCcccccchHHHHHHHHHHH--HHcCCC--CCcEEEEECCCch
Confidence               112334456788999 99999999999999999999999996 99999999987  555433  7899999999999


Q ss_pred             ChHHHHHhhh
Q 020236          319 DLGVLWDSFR  328 (329)
Q Consensus       319 ~~~~~~~~~~  328 (329)
                      ++..+.+.+.
T Consensus       313 ~~~~~~~~~~  322 (325)
T 1j0a_A          313 GTFHYGDKLL  322 (325)
T ss_dssp             HHHHTHHHHH
T ss_pred             hhhchHHHHh
Confidence            9888887653

>1x1q_A Tryptophan synthase beta chain; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.50A {Thermus thermophilus}

Probab=100.00  E-value=1.5e-56  Score=425.00  Aligned_cols=319  Identities=19%  Similarity=0.218  Sum_probs=257.4

Q ss_pred             CCCCC-CCHHHHHHHHHHhc--------------cccC-CCCCccchhhhhhc-CCeEEEEecCCCCCCccchhhHHHHH
Q 020236            5 GEKYA-ANFSSIKEAQKRIS--------------LYIH-KTPVLSSETLNSMS-GRSLFFKCECFQKGGAFKFRGASNAV   67 (329)
Q Consensus         5 ~~~~~-~~~~~~~~~~~~~~--------------~~i~-~TPl~~~~~l~~~~-g~~i~~K~E~~nptGS~KdR~a~~~l   67 (329)
                      ||... ++++++..+++++.              ++++ +|||+++++|++.+ +.+||+|+|++|||||||+|++.+++
T Consensus        38 ~p~~~~~~~~~i~~A~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~~~Ls~~~gg~~i~lK~E~l~ptGSfK~R~a~~~i  117 (418)
T 1x1q_A           38 VPETLIPALEELEAAYREAKKDPAFLEELDHYLRQFAGRPTPLYHAKRLSEYWGGAQVFLKREDLLHTGAHKINNTLGQA  117 (418)
T ss_dssp             CCTTTHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSGGGBTTHHHHHHHH
T ss_pred             CCchhhhhHHHHHHHHHHHhhChHHHHHHHHhhhcccCCCCCcEEhHHhHhhcCCceEEEEEccCCcCccHHHHHHHHHH
Confidence            34443 67899999999887              4664 69999999999988 59999999999999999999999998


Q ss_pred             hcCchhccCCeE-EEECCchHHHHHHHHHHHcCCCEEEEEcCCC---CHHHHHHHHHcCCEEEEECC---CHHHHHHHHH
Q 020236           68 LSLDEDQAIKGV-VTHSSGNHAAALSLAAKLRGIPAYIVIPKNA---PKCKVENVVRYGGQVIWSEA---TMHSRESVAS  140 (329)
Q Consensus        68 ~~a~~~~~~~~v-v~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~---~~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~  140 (329)
                      ..+.++ +.+++ +++|+||||+|+|++|+.+|++|+||||+..   +..|+.+++.+||+|+.++.   +++++.+.+.
T Consensus       118 ~~a~~~-g~~~vI~~~ssGNhg~avA~aaa~~Gi~~~I~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~~a~~~a~  196 (418)
T 1x1q_A          118 LLARRM-GKRRVIAETGAGQHGVSVATVAALFGLECVVYMGEEDVRRQALNVFRMKLLGAEVRPVAAGSRTLKDATNEAI  196 (418)
T ss_dssp             HHHHHH-TCCEEEEECSSSHHHHHHHHHHHHHTCEEEEEEEHHHHHTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHH
T ss_pred             HHHHHc-CCCEEEEecCchHHHHHHHHHHHHcCCCEEEEECCCcchhhhHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
Confidence            876444 44445 4689999999999999999999999999862   23678899999999999984   7888887765


Q ss_pred             H-HHHHc-CCEe-eCCCCCc--c--cc-cccCcchHHHHhhC----C-CCCEEEEeCCCChHHHHHHHHHHHh-CCCCEE
Q 020236          141 K-VLEET-GAVL-VHPYNDG--R--II-SGQGTISLEFLEQV----P-LLDTIIVPISGGGLISGVALAAKSI-KPAIRI  206 (329)
Q Consensus       141 ~-~~~~~-~~~~-~~~~~n~--~--~~-~g~~t~~~Ei~~ql----~-~~d~vv~~~GtGg~~~Gi~~~~k~~-~~~~~v  206 (329)
                      + ++++. +.+| ++++.|+  +  .+ .||+|++.||++|+    + .||+||+|+|+||+++|++.++|.+ .|.+||
T Consensus       197 ~~~~~~~~~~~~i~~~~~n~~p~~~~v~~gq~t~~~Ei~~Ql~~~~~~~~D~vvvpvGgGG~~~Gi~~~~k~l~~p~~~v  276 (418)
T 1x1q_A          197 RDWITNVRTTFYILGSVVGPHPYPMMVRDFQSVIGEEVKRQSLELFGRLPDALIAAVGGGSNAIGLFAPFAYLPEGRPKL  276 (418)
T ss_dssp             HHHHHTTTTEEECCCCSSSSTTHHHHHHHHHTHHHHHHHHHHHHHHSSCCSEEEEECSSSSHHHHHHHHHHTSCTTCCEE
T ss_pred             HHHHHhCCCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCCeE
Confidence            4 45553 4455 4555443  2  23 59999999999998    3 4999999999999999999999987 799999


Q ss_pred             EEEecCCC----chHHHHHHcCCeeec---------------CCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHH
Q 020236          207 LAAEPIGA----NDAAQSKAAGRIITL---------------LETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEI  266 (329)
Q Consensus       207 i~v~~~~~----~~~~~~~~~g~~~~~---------------~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~  266 (329)
                      |+|||.++    +.+..++..|.+...               ...+|+++|++.+ +++..+.+.+...++++.|+|+|+
T Consensus       277 igVe~~g~~~~~~~~~~~l~~G~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~  356 (418)
T 1x1q_A          277 IGVEAAGEGLSTGRHAASIGAGKRGVLHGSYMYLLYDHDGQITPAHSVSAGLDYPGVGPEHSYYADAGVAEYASVTDEEA  356 (418)
T ss_dssp             EEEEECCTTSSSCHHHHHHHHTCEEEETTEEEEBCCC----------------CSBCCHHHHHHHHHTSEEEEEECHHHH
T ss_pred             EEEecCCcccccHHHHHHHHcCCeeeeccccccccccccccccCCceeeeccCCCCCCHHHHHHHhccCeEEEEECHHHH
Confidence            99999997    467888988876542               2367999999874 676677777888899999999999


Q ss_pred             HHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          267 IEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       267 ~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      +++++++++++||+++|++|+++++++++  .++  +.++++||+++|| |++|++.+.+++.
T Consensus       357 ~~a~~~l~~~egi~~~~~sa~a~a~a~~~--~~~--~~~~~~Vv~vlsG~g~kd~~~~~~~~~  415 (418)
T 1x1q_A          357 LEGFKLLARLEGIIPALESAHAIAYAAKV--VPE--MDKDQVVVINLSGRGDKDVTEVMRLLG  415 (418)
T ss_dssp             HHHHHHHHHHHSCCBCHHHHHHHHHHHHH--TTT--SCTTCEEEEEECBBGGGTHHHHHHTCC
T ss_pred             HHHHHHHHHhcCCcccchHHHHHHHHHHH--HHh--cCCCCeEEEEECCCCCCCHHHHHHHhc
Confidence            99999999999999999999999999876  433  3478999999999 6899999998875

>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase; substrate, PLP, crystal, complex, hydrolase; HET: PLP; 1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A* 1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*

Probab=100.00  E-value=4e-58  Score=425.59  Aligned_cols=299  Identities=14%  Similarity=0.127  Sum_probs=252.9

Q ss_pred             HHhccccCCCCCccchhhhhhc-C-CeEEEEecCCC-C--CCccchhhHHHHHhcCchhccCCeEEE--ECCchHHHHHH
Q 020236           20 KRISLYIHKTPVLSSETLNSMS-G-RSLFFKCECFQ-K--GGAFKFRGASNAVLSLDEDQAIKGVVT--HSSGNHAAALS   92 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~-g-~~i~~K~E~~n-p--tGS~KdR~a~~~l~~a~~~~~~~~vv~--~ssGN~g~a~A   92 (329)
                      +++...+++|||+++++|++.+ | .+||+|+|++| |  +||||||++.+++..+.++ +.++||+  +|+||||+|+|
T Consensus         7 ~~i~~~~~~TPL~~~~~l~~~~~g~~~i~~K~E~~n~p~~~gs~K~R~a~~~l~~a~~~-g~~~vv~~GassGN~g~alA   85 (338)
T 1tzj_A            7 PRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQ-GCDTLVSIGGIQSNQTRQVA   85 (338)
T ss_dssp             CCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHTTHHHHHHT-TCCEEEEEEETTCHHHHHHH
T ss_pred             CccccCCCCCccEEHHHHHHhhCCCceEEEEeCCCCCCCCCCchHHHHHHHHHHHHHHc-CCCEEEEcCCchhHHHHHHH
Confidence            4577889999999999999888 8 89999999997 8  9999999999999988644 5578888  79999999999


Q ss_pred             HHHHHcCCCEEEEEcCCCCHH--------HHHHHHHcCCEEEEECCCHHH-----HHHHHHHHHHHcCC-E-eeCC-CCC
Q 020236           93 LAAKLRGIPAYIVIPKNAPKC--------KVENVVRYGGQVIWSEATMHS-----RESVASKVLEETGA-V-LVHP-YND  156 (329)
Q Consensus        93 ~~a~~~G~~~~i~~p~~~~~~--------~~~~~~~~Ga~v~~~~~~~~~-----~~~~a~~~~~~~~~-~-~~~~-~~n  156 (329)
                      ++|+.+|++|++|||++.+..        |+++++.+||+|+.+++++++     +.+.+++++++.+. + +.++ |+|
T Consensus        86 ~~a~~~G~~~~iv~p~~~~~~~~~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~p~~~~~n  165 (338)
T 1tzj_A           86 AVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDH  165 (338)
T ss_dssp             HHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHTTCCEEECCGGGTSS
T ss_pred             HHHHHhCCceEEEecCCCCccccccccCccHHHHHhCCCEEEEeCCcchhhHHHHHHHHHHHHHhcCCceEEeCCCcCCC
Confidence            999999999999999988764        999999999999999987665     36677888777543 3 3466 999


Q ss_pred             cccccccCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHh-CCCCEEEEEecCCCchHHHHHHcCCeeecCC
Q 020236          157 GRIISGQGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSI-KPAIRILAAEPIGANDAAQSKAAGRIITLLE  231 (329)
Q Consensus       157 ~~~~~g~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~-~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~  231 (329)
                      |.+++||.++++||++|++    .||+||+|+|||||++|++.++|++ +|. |||+|||.+++++..+...    .  .
T Consensus       166 ~~~~~g~~t~~~Ei~~q~~~~~~~~d~vv~~vG~GGt~~Gi~~~~k~~g~~~-~vigve~~~~~~~~~~~~~----~--~  238 (338)
T 1tzj_A          166 PLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRAD-RVIGVDASAKPAQTREQIT----R--I  238 (338)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGG-GEEEEECSSCHHHHHHHHH----H--H
T ss_pred             cccHHHHHHHHHHHHHHHHhcCCCCCEEEEecCCcHHHHHHHHHHHhhCCCC-eEEEEEccCchHHHHHHHH----H--H
Confidence            9999999999999999995    7999999999999999999999998 788 9999999999877654311    0  1


Q ss_pred             CCccccccccC--CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCe
Q 020236          232 TNTVADGLRAF--LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKK  308 (329)
Q Consensus       232 ~~t~~~gl~~~--~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~  308 (329)
                      .++++++++.+  +++..|.+++++.+.++.|+|+|+++++++|++++|+++||+ ||++++|+++.  .+++.+.++++
T Consensus       239 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~~gi~~ep~ysa~alaa~~~~--~~~~~~~~~~~  316 (338)
T 1tzj_A          239 ARQTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEM--VRNGEFPEGSR  316 (338)
T ss_dssp             HHHHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHH--HHTTCSCTTCE
T ss_pred             HHHHHHHcCCCCCCCcccEEEecCcccceeecCCHHHHHHHHHHHHhcCCccccchHHHHHHHHHHH--HHcCCCCCCCe
Confidence            23455555532  344556667788999999999999999999999999999997 99999999987  55555667899


Q ss_pred             EEEEeCCCCCChHHHHHhhh
Q 020236          309 IGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       309 vv~v~tgg~~~~~~~~~~~~  328 (329)
                      ||+|+|||++|++.+.++++
T Consensus       317 Vv~i~tGG~~~~~~~~~~~~  336 (338)
T 1tzj_A          317 VLYAHLGGVPALNGYSFIFR  336 (338)
T ss_dssp             EEEEECCCGGGGGGGTGGGT
T ss_pred             EEEEECCCcccccchHHHhc
Confidence            99999999999999988764

>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens} SCOP: c.79.1.1 PDB: 1m54_A*

Probab=100.00  E-value=2.8e-56  Score=422.49  Aligned_cols=294  Identities=22%  Similarity=0.315  Sum_probs=244.1

Q ss_pred             HHHhccccCCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSL   93 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~   93 (329)
                      ++++.+.+++|||+++++|++.+|  .+||+|+|++|||||||||++.+++..+.+++.   ..+||++|+||||+|+|+
T Consensus        99 ~~~i~~~ig~TPLv~l~~Ls~~~G~~~~v~lK~E~~nptGSfKdR~a~~~i~~a~~~G~l~~g~tVV~aSsGN~G~AlA~  178 (435)
T 1jbq_A           99 LPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLAL  178 (435)
T ss_dssp             ESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHHHH
T ss_pred             HHHHHhhCCCCCeEECcchhhHhCCCceEEEEECCCCCcCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCCCHHHHHHHH
Confidence            456778899999999999998887  699999999999999999999999998865543   367999999999999999


Q ss_pred             HHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHHH---HHHHHHHHHHHc-CCEeeCCCCCcc-cccccCcc
Q 020236           94 AAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMHS---RESVASKVLEET-GAVLVHPYNDGR-IISGQGTI  166 (329)
Q Consensus        94 ~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~~---~~~~a~~~~~~~-~~~~~~~~~n~~-~~~g~~t~  166 (329)
                      +|+.+|++|+||||++++..|+++++.+||+|+.++.  ++++   ..+.+++++++. +.++++||+|+. ...||.++
T Consensus       179 aaa~~Gi~~~IvmP~~~s~~k~~~l~~~GAeVv~v~~~~~~d~~~~~~~~a~~la~~~~~~~~i~q~~n~~n~~ag~~t~  258 (435)
T 1jbq_A          179 AAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTT  258 (435)
T ss_dssp             HHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHHTH
T ss_pred             HHHHcCCeEEEEeCCCCCHHHHHHHHhCCCEEEEecCCCCcchHHHHHHHHHHHHHhcCCeEEeCccCCcccHHHHHHHH
Confidence            9999999999999999999999999999999999985  3544   356778887774 678889999986 57789999


Q ss_pred             hHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchH-HHHHHcCCeeecCCCCccccccccCCC
Q 020236          167 SLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDA-AQSKAAGRIITLLETNTVADGLRAFLG  244 (329)
Q Consensus       167 ~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~-~~~~~~g~~~~~~~~~t~~~gl~~~~~  244 (329)
                      ++||++|++ ++|+||+|+|+||+++|++.++|+..|.++||+|||.+++.+ ..++..+.     ...+..+|++...-
T Consensus       259 a~EI~eQl~~~~D~vVvpvGtGGtlaGi~~~lk~~~p~vrVigVep~gs~~~~~~~l~~~~-----~~~~~~~gig~~~~  333 (435)
T 1jbq_A          259 ADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTE-----QTTYEVEGIGYDFI  333 (435)
T ss_dssp             HHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCS-----CCCCSCCSCCCSSC
T ss_pred             HHHHHHHcCCCCCEEEEecCCcHhHHHHHHHHHHhCCCCEEEEEecCCchhhchhhhhcCC-----CcceeecccccCcc
Confidence            999999997 699999999999999999999999999999999999998643 12233222     12244556554311


Q ss_pred             cccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHH
Q 020236          245 DLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVL  323 (329)
Q Consensus       245 ~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~  323 (329)
                      +..  +....+|+++.|+|+|+++++++|++++|+++||+||++++|+++.  .++  +.++++||+|+|| |.+|++++
T Consensus       334 ~~~--l~~~~vd~~~~Vsd~ea~~a~r~La~~eGilve~ssgaalaaa~~~--~~~--~~~g~~VV~iltd~g~ky~~~~  407 (435)
T 1jbq_A          334 PTV--LDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA--AQE--LQEGQRCVVILPDSVRNYMTKF  407 (435)
T ss_dssp             CTT--CCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHH--GGG--CCTTCEEEEEECBBGGGGTTTT
T ss_pred             chh--hhhhhccceEEeCHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHH--HHH--cCCCCeEEEEEcCCcccccchh
Confidence            111  1246789999999999999999999999999999999999999986  333  3468899999998 68888764

>1v8z_A Tryptophan synthase beta chain 1; beta+alpha, riken structural genomics/proteomics initiative, structural genomics, lyase; HET: PLP; 2.21A {Pyrococcus furiosus} SCOP: c.79.1.1 PDB: 1wdw_B*

Probab=100.00  E-value=6.5e-56  Score=418.00  Aligned_cols=313  Identities=21%  Similarity=0.226  Sum_probs=258.9

Q ss_pred             CHHHHHHHHHHhcc--------------ccCC-CCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhc
Q 020236           11 NFSSIKEAQKRISL--------------YIHK-TPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ   74 (329)
Q Consensus        11 ~~~~~~~~~~~~~~--------------~i~~-TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~   74 (329)
                      +++++..+++++..              .+++ |||+++++|++.+| .+||+|+|++|||||||||++.+++..+.++ 
T Consensus        18 ~~~~i~~a~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~~~l~~~~g~~~i~~K~E~~~ptGSfK~R~a~~~i~~a~~~-   96 (388)
T 1v8z_A           18 PLKELEKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFM-   96 (388)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHhhcChHHHHHHHHHHHHhcCCCCCceehHhhHhhcCCceEEEEeccCCCCCCHHHHHHHHHHHHHHHc-
Confidence            67788888888764              7775 99999999999887 8999999999999999999999999876444 


Q ss_pred             cCCeEE-EECCchHHHHHHHHHHHcCCCEEEEEcCC-CC--HHHHHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHHc
Q 020236           75 AIKGVV-THSSGNHAAALSLAAKLRGIPAYIVIPKN-AP--KCKVENVVRYGGQVIWSEA---TMHSRESVASK-VLEET  146 (329)
Q Consensus        75 ~~~~vv-~~ssGN~g~a~A~~a~~~G~~~~i~~p~~-~~--~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~~  146 (329)
                      +.+++| ++||||||+|+|++|+.+|++|+||||+. .+  ..|+++++.+||+|+.++.   +++++.+.+.+ ++++.
T Consensus        97 g~~~vv~~~ssGN~g~a~A~aa~~~G~~~~iv~p~~~~~~~~~~~~~~~~~GA~V~~~~~~~~~~~~a~~~a~~~~~~~~  176 (388)
T 1v8z_A           97 GKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATF  176 (388)
T ss_dssp             TCCEEEEEESSSHHHHHHHHHHHHTTCEEEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEecCchHHHHHHHHHHHHcCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhC
Confidence            445666 48999999999999999999999999975 22  4668999999999999986   78888877754 45553


Q ss_pred             -CC-EeeCCCCCcc----c-ccccCcchHHHHhhC----C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC
Q 020236          147 -GA-VLVHPYNDGR----I-ISGQGTISLEFLEQV----P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA  214 (329)
Q Consensus       147 -~~-~~~~~~~n~~----~-~~g~~t~~~Ei~~ql----~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~  214 (329)
                       +. +.++++.|+.    . ..||.|+++||++|+    + .||+||+|+||||+++|++.+++ ..|.+|||+|||.++
T Consensus       177 ~~~~~~~~~~~n~~p~~~~~~~~~~t~~~Ei~~q~~~~~~~~~d~vvvpvG~GG~~aGi~~~~~-~~~~~~vigve~~~~  255 (388)
T 1v8z_A          177 EYTHYLIGSVVGPHPYPTIVRDFQSVIGREAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFV-NDKKVKLVGVEAGGK  255 (388)
T ss_dssp             TTEEECCCSSCSSTTHHHHHHHHHHHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEET
T ss_pred             CCceEecCCccCCCCchhHHHHHhHHHHHHHHHHHHHhcCCCCCEEEEecCccHhHHHHHHHHh-hCCCceEEEEccCcc
Confidence             43 4456765543    2 348999999999998    4 49999999999999999998887 489999999999986


Q ss_pred             ch----HHHHHHcCCeee---------------cCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHH
Q 020236          215 ND----AAQSKAAGRIIT---------------LLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCY  274 (329)
Q Consensus       215 ~~----~~~~~~~g~~~~---------------~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~  274 (329)
                      +.    +.+++..|++..               ....+|+++|+..+ ++...+.+.+..+++++.|+|+|+++++++++
T Consensus       256 ~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~tia~gl~~~~~g~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~  335 (388)
T 1v8z_A          256 GLESGKHSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELS  335 (388)
T ss_dssp             BGGGTBSCCHHHHCEEEEETTEEEEECBCTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHH
T ss_pred             ccchhhhhHHHhcCCceeccccccccccccccccCCCceeeeccccCCCChhHHHHHhcCCcEEEEECHHHHHHHHHHHH
Confidence            42    345677775532               22467899999864 66667777788889999999999999999999


Q ss_pred             HHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCC-CCChHHHHHhhhC
Q 020236          275 EILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG-NVDLGVLWDSFRK  329 (329)
Q Consensus       275 ~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg-~~~~~~~~~~~~~  329 (329)
                      +++|++++|++|+++++++++  .++  +.++++||+++||| .+|++.+.+.++|
T Consensus       336 ~~egi~~~~~sa~a~a~a~~l--~~~--~~~~~~vv~i~tg~g~k~~~~~~~~~~~  387 (388)
T 1v8z_A          336 RTEGIIPALESAHAVAYAMKL--AKE--MSRDEIIIVNLSGRGDKDLDIVLKVSGN  387 (388)
T ss_dssp             HHHSCCBCHHHHHHHHHHHHH--HHT--SCTTCEEEEEECBBSGGGHHHHHHHHC-
T ss_pred             HhcCCeecccHHHHHHHHHHH--HHh--cCCCCEEEEEECCCCccCHHHHHHHhhc
Confidence            999999999999999999876  443  34789999999995 6999999998865

>1qop_B Tryptophan synthase beta chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.79.1.1 PDB: 1k7e_B* 1k7f_B* 1kfb_B* 1k3u_B* 1tjp_B* 1wbj_B* 2cli_B* 2clk_B* 2cll_B* 2j9x_B* 3cep_B* 1kfc_B* 1k8x_B* 1kfj_B* 1kfk_B* 2rh9_B* 2rhg_B* 2j9y_B* 1cw2_B* 1a5s_B* ...

Probab=100.00  E-value=1.3e-55  Score=416.47  Aligned_cols=313  Identities=19%  Similarity=0.212  Sum_probs=259.9

Q ss_pred             CCHHHHHHHHHHhcc--------------ccC-CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhc
Q 020236           10 ANFSSIKEAQKRISL--------------YIH-KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ   74 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~--------------~i~-~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~   74 (329)
                      .+++++..+++++..              +++ +|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++ 
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ig~~TPL~~~~~l~~~~g~~i~lK~E~l~ptGSfK~R~a~~~~~~a~~~-  100 (396)
T 1qop_B           22 PALNQLEEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRM-  100 (396)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHT-
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCCCCCcEEhhhhhhccCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHc-
Confidence            678899988888863              776 5999999999998999999999999999999999999999876444 


Q ss_pred             cCCeEEE-ECCchHHHHHHHHHHHcCCCEEEEEcCC-CCH--HHHHHHHHcCCEEEEECC---CHHHHHHHHHHH-HHHc
Q 020236           75 AIKGVVT-HSSGNHAAALSLAAKLRGIPAYIVIPKN-APK--CKVENVVRYGGQVIWSEA---TMHSRESVASKV-LEET  146 (329)
Q Consensus        75 ~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~i~~p~~-~~~--~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~~~-~~~~  146 (329)
                      +.+++|+ +|+||||+|+|++|+++|++|+||||+. .+.  .|+.+|+.+||+|+.++.   +++++.+.+.+. +++.
T Consensus       101 g~~~vi~e~ssGNhg~a~A~aa~~~G~~~~i~mp~~~~~~~~~~~~~~~~~GA~V~~v~~~~~~~~~a~~~a~~~~~~~~  180 (396)
T 1qop_B          101 GKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSY  180 (396)
T ss_dssp             TCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHT
T ss_pred             CcCEEEEecCchHHHHHHHHHHHHCCCcEEEEEcCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhcc
Confidence            4556666 8999999999999999999999999985 433  457899999999999985   788888877764 5553


Q ss_pred             -CCE-eeCCCCCc--c--c-ccccCcchHHHHhhC----C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC
Q 020236          147 -GAV-LVHPYNDG--R--I-ISGQGTISLEFLEQV----P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA  214 (329)
Q Consensus       147 -~~~-~~~~~~n~--~--~-~~g~~t~~~Ei~~ql----~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~  214 (329)
                       +.+ .++++.|+  +  . ..||+|++.||++|+    + .||+||+|+|+||+++|++.+++ ..|.++||+|||.++
T Consensus       181 ~~~~~~~~~~~n~~p~~~~v~~g~~t~~~Ei~~Ql~~~~~~~~d~vvvpvG~GG~~~Gi~~~~~-~~~~~~vigVe~~~~  259 (396)
T 1qop_B          181 ETAHYMLGTAAGPHPYPTIVREFQRMIGEETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFI-NDTSVGLIGVEPGGH  259 (396)
T ss_dssp             TTEEECCCSSCSSTTHHHHHHHTTTHHHHHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGT-TCTTSEEEEEEEEET
T ss_pred             CCcEEEeCCcCCCCCchHHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHHh-cCCCCEEEEEeCCCc
Confidence             544 44555443  2  2 348999999999999    4 69999999999999999999998 489999999999986


Q ss_pred             c----hHHHHHHcCCeee---------------cCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHH
Q 020236          215 N----DAAQSKAAGRIIT---------------LLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCY  274 (329)
Q Consensus       215 ~----~~~~~~~~g~~~~---------------~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~  274 (329)
                      .    .+.+++..|.+..               ....+|+++|+..+ +++..+.+.+..++.++.|+|+|+++++++|+
T Consensus       260 ~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~V~d~e~~~a~~~l~  339 (396)
T 1qop_B          260 GIETGEHGAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLC  339 (396)
T ss_dssp             BGGGTBSCCHHHHSEEEEETEEEEEECBCTTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHcCCeeeeccchhhhcccccCCcCCCceeeccCCCCCCCHHHHHHHhcCCeEEEEECHHHHHHHHHHHH
Confidence            4    3556777776532               22478999999874 67677777788889999999999999999999


Q ss_pred             HHcCceeCcchHHHHHHHhccccccCCCCC-CCCeEEEEeCCC-CCChHHHHHhhh
Q 020236          275 EILKVAVEPSGAIGLAAVLSDGFRKNPAWQ-DSKKIGIVLSGG-NVDLGVLWDSFR  328 (329)
Q Consensus       275 ~~egi~~~pssa~alaa~~~~~~~~~~~~~-~~~~vv~v~tgg-~~~~~~~~~~~~  328 (329)
                      ++|||+++|++|+++++++++  .++  +. ++++||+++||+ ++|++.+.++++
T Consensus       340 ~~egi~~~~~sa~a~a~a~~l--~~~--~~~~~~~vv~i~tg~g~k~~~~~~~~~~  391 (396)
T 1qop_B          340 RHEGIIPALESSHALAHALKM--MRE--QPEKEQLLVVNLSGRGDKDIFTVHDILK  391 (396)
T ss_dssp             HHHSCCBCHHHHHHHHHHHHH--HHH--STTSCEEEEEEECBBCGGGHHHHHHHC-
T ss_pred             HhcCCccccchHHHHHHHHHH--HHh--cCCCCCeEEEEECCCCCCCHHHHHHHhh
Confidence            999999999999999999876  332  23 678999999995 799999998765

>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase; HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1

Probab=100.00  E-value=2.6e-55  Score=410.90  Aligned_cols=277  Identities=21%  Similarity=0.220  Sum_probs=238.4

Q ss_pred             cCCCCCccchhhhhhcCCeEEEEecCCCC-CCccchhhHHHHHhc---CchhccCCeEEEECCchHHHHHHHHHHHcCCC
Q 020236           26 IHKTPVLSSETLNSMSGRSLFFKCECFQK-GGAFKFRGASNAVLS---LDEDQAIKGVVTHSSGNHAAALSLAAKLRGIP  101 (329)
Q Consensus        26 i~~TPl~~~~~l~~~~g~~i~~K~E~~np-tGS~KdR~a~~~l~~---a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~  101 (329)
                      +.+|||+++++|++. |.+||+|+|++|| |||||||++.+++..   +.+. + ++|+++|+||||+|+|++|+++|++
T Consensus        94 ~~~TPL~~l~~Ls~~-g~~IylK~E~lnp~tGS~K~R~a~~~i~~l~~a~~~-g-~~Iv~assGNhG~AlA~aaa~~Gl~  170 (389)
T 1wkv_A           94 GKPTPLVRSRLQLPN-GVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEK-G-SLVADATSSNFGVALSAVARLYGYR  170 (389)
T ss_dssp             SCSCCEEECCCCCST-TEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCT-T-CEEEEECCHHHHHHHHHHHHHTTCE
T ss_pred             CCCCCeEEccccccC-CCeEEEEEcCCCCCcCChHHHHHHHHHHHHHHHHhc-C-CEEEEECCcHHHHHHHHHHHHcCCe
Confidence            468999999999876 8899999999999 999999999999988   5333 3 7899999999999999999999999


Q ss_pred             EEEEEcCCCCHHHHHHHHHcCCEEE-EEC-CCHHHHHHHHHHHHHHcCCEeeCCCCCcc-cccccCcchHHHHhhCC---
Q 020236          102 AYIVIPKNAPKCKVENVVRYGGQVI-WSE-ATMHSRESVASKVLEETGAVLVHPYNDGR-IISGQGTISLEFLEQVP---  175 (329)
Q Consensus       102 ~~i~~p~~~~~~~~~~~~~~Ga~v~-~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~n~~-~~~g~~t~~~Ei~~ql~---  175 (329)
                      |+||||+..+..|+.+|+.+||+|+ .++ ++++++.+.+++++++.+++|++||+||. ...||++++.||++|++   
T Consensus       171 ~~ivmp~~~~~~k~~~~~~~GAeVv~~v~~~~~~da~~~a~~~~~~~g~~~~~p~~N~~~~~~~~~t~g~Ei~~Q~~~~g  250 (389)
T 1wkv_A          171 ARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGG  250 (389)
T ss_dssp             EEEEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHHCCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCHHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHHHHccCcEecCcCCChHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999 887 67888888899988888999999998875 67789999999999984   


Q ss_pred             -CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhc
Q 020236          176 -LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDL  254 (329)
Q Consensus       176 -~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~  254 (329)
                       .||+||+|+||||+++|++.+|++..|.+|+|+|||.+++++.     |       ..++.      .++. |. ....
T Consensus       251 ~~~D~vv~~vG~GG~~~Gi~~~~k~~~p~vrvigVe~~~~~~l~-----G-------i~~i~------~~~~-~~-~~~~  310 (389)
T 1wkv_A          251 LALRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIP-----G-------IRRVE------TGML-WI-NMLD  310 (389)
T ss_dssp             CCEEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCT-----T-------CCCGG------GCCS-HH-HHSC
T ss_pred             CCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEEEEecCCCCccc-----c-------ccccC------Ccch-hh-hhhe
Confidence             6999999999999999999999999999999999999876431     1       11111      0122 22 2345


Q ss_pred             CC-cEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          255 VD-DVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       255 ~~-~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      +| +.+.|+|+|+++++++++++|||+++|+||+++++++++  ++++.+.+ +.+|+++|| |.+|++++.+.+.
T Consensus       311 ~dg~~~~Vsd~ea~~a~~~l~~~eGi~~~pssa~alaa~~~l--~~~g~~~~-~~vVviltg~G~k~~~~~~~~~~  383 (389)
T 1wkv_A          311 ISYTLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKK--AAEGDLEP-GDYVVVVPDTGFKYLSLVQNALE  383 (389)
T ss_dssp             CCCEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHH--HHTTCSCS-EEEEEEECBBGGGCHHHHHHHHC
T ss_pred             eccEEEEECHHHHHHHHHHHHHHcCCeEChHHHHHHHHHHHH--HHhcCCCC-CCEEEEEcCCCccCHHHHHHHHH
Confidence            66 899999999999999999999999999999999999987  55554544 457889998 7999999988765

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=100.00  E-value=8.5e-56  Score=432.22  Aligned_cols=304  Identities=18%  Similarity=0.249  Sum_probs=252.8

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECC
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSS   84 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ss   84 (329)
                      .++..+...++++.+.+++|||+++++|++.+|  .+||+|+|++|||||||||++.+++..+.+++.   ..+|+++|+
T Consensus        42 ~~~~~~~~~~~~i~~~ig~TPl~~l~~l~~~~g~~~~i~~K~E~~~ptGS~K~R~a~~~i~~a~~~g~~~~g~~vv~~ss  121 (527)
T 3pc3_A           42 RGIAHRQQITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQGLLKPGYTIIEPTS  121 (527)
T ss_dssp             CCCCCCCSSCSSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTTHHHHHHHHHHHHHHTCCCTTCEEEEECS
T ss_pred             ccccchhhHHhhHHhhcCCCCcEEcchhhhhcCCCcEEEEEeccCCCCCCHHHHHHHHHHHHHHHcCCCCCCCEEEEeCC
Confidence            333444455677888999999999999998887  799999999999999999999999998865543   268999999


Q ss_pred             chHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC--CHH---HHHHHHHHHHHHc-CCEeeCCCCCcc
Q 020236           85 GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA--TMH---SRESVASKVLEET-GAVLVHPYNDGR  158 (329)
Q Consensus        85 GN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~--~~~---~~~~~a~~~~~~~-~~~~~~~~~n~~  158 (329)
                      ||||+|+|++|+.+|++|+||||+.++..|+++++.+||+|+.++.  +++   .+.+.+++++++. +.+|++||+||.
T Consensus       122 GN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~n~~  201 (527)
T 3pc3_A          122 GNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPTEAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAG  201 (527)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTTSCTTSTTSHHHHHHHHHHHSSSEECCCTTTCTH
T ss_pred             CHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCCCCCcccHHHHHHHHHHHHHhCCCcEecCCCCCcc
Confidence            9999999999999999999999999999999999999999999986  344   3567788888875 577889999986


Q ss_pred             -cccccCcchHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccc
Q 020236          159 -IISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVA  236 (329)
Q Consensus       159 -~~~g~~t~~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~  236 (329)
                       ...||.++++||++|++ +||+||+|+||||+++|++.++|+..|.++||||||.+++.+. ....+.   .....+..
T Consensus       202 n~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~GG~~~G~~~~~k~~~p~~~vigve~~~~~~~~-~~~~~~---~~~~~~~~  277 (527)
T 3pc3_A          202 NPLAHYDGTAAEILWQLDNKVDMIVVSAGTAGTISGIGRKIKEQVPSCQIVGVDPYGSILAR-PAELNK---TDVQFYEV  277 (527)
T ss_dssp             HHHHHHHTHHHHHHHHTTTCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEETTCCCSS-SGGGGC---CSCCCCSC
T ss_pred             hHHHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEecCCccccc-chhhcC---CCCCceec
Confidence             67899999999999998 7999999999999999999999999999999999999986321 111111   11123455


Q ss_pred             cccccCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-
Q 020236          237 DGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-  315 (329)
Q Consensus       237 ~gl~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-  315 (329)
                      +|++.+.-+.  .+..+++|+++.|+|+|+++++++|+++||+++||+||++++|+++.  ++.  +.++++||+++|+ 
T Consensus       278 ~gi~~~~~p~--~~~~~~~d~~~~V~d~e~~~a~r~l~~~eGi~~~pssa~alaaal~~--~~~--~~~~~~vv~i~~d~  351 (527)
T 3pc3_A          278 EGIGYDFPPT--VFDDTVVDVWTKIGDSDCFPMSRRLNAEEGLLCGGSSGGAMHAALEH--ARK--LKKGQRCVVILPDG  351 (527)
T ss_dssp             CSCCCSSCCT--TCCGGGCCEEEEECGGGTHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HTT--CCTTCEEEEEECBB
T ss_pred             cccCCCCCCc--ccchhhCcEEEEECHHHHHHHHHHHHHHcCceEcHHHHHHHHHHHHH--HHH--cCCCCeEEEEEcCc
Confidence            6766542111  12357899999999999999999999999999999999999999987  433  3578999999998 


Q ss_pred             CCCChHHH
Q 020236          316 GNVDLGVL  323 (329)
Q Consensus       316 g~~~~~~~  323 (329)
                      |.+|++.+
T Consensus       352 g~ryls~~  359 (527)
T 3pc3_A          352 IRNYMTKF  359 (527)
T ss_dssp             GGGGTTTT
T ss_pred             chhhHhhh
Confidence            78887654

>2o2e_A Tryptophan synthase beta chain; amino-acid biosynthesis, tryptophan biosynthesis, structural genomics; 2.20A {Mycobacterium tuberculosis} PDB: 2o2j_A

Probab=100.00  E-value=1.3e-54  Score=411.56  Aligned_cols=314  Identities=19%  Similarity=0.220  Sum_probs=228.5

Q ss_pred             CCHHHHHHHHHHhc--------------cccC-CCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchh
Q 020236           10 ANFSSIKEAQKRIS--------------LYIH-KTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDED   73 (329)
Q Consensus        10 ~~~~~~~~~~~~~~--------------~~i~-~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~   73 (329)
                      .+++++.++++++.              ++++ +|||+++++|++.+| .+||+|+|++|||||||+|++.+++..+.+.
T Consensus        48 ~~~~~i~~a~~~~~~~~~~~~~~~~~~~~~~g~~TPL~~~~~Ls~~~gg~~i~lK~E~lnptGSfK~R~a~~~~~~a~~~  127 (422)
T 2o2e_A           48 AVIEEVTAAYQKERVSQDFLDDLDRLQANYAGRPSPLYEATRLSQHAGSARIFLKREDLNHTGSHKINNVLGQALLARRM  127 (422)
T ss_dssp             HHHHHHHHHHHHHHTSTHHHHHHHHHTTTTSSCSCCEEECGGGGGGTTTCEEEEECGGGCCSSTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhCCCCCCeEEChhhHhhcCCCeEEEEEcCCCCCCcHHHHHHHHHHHHHHHc
Confidence            56788888888884              4665 599999999999885 8999999999999999999999998876444


Q ss_pred             ccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC---HHHHHHHHHcCCEEEEECC---CHHHHHHHHHH-HHHH-
Q 020236           74 QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP---KCKVENVVRYGGQVIWSEA---TMHSRESVASK-VLEE-  145 (329)
Q Consensus        74 ~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~---~~~~~~~~~~Ga~v~~~~~---~~~~~~~~a~~-~~~~-  145 (329)
                      +....|+++|+||||+|+|++|+++|++|+||||+...   ..|+.+|+.+||+|+.++.   +++++.+.+.+ ++++ 
T Consensus       128 g~~~vI~~~ssGNhG~A~A~aaa~~G~~~~I~mp~~~~~~q~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~a~~~~~~~~  207 (422)
T 2o2e_A          128 GKTRVIAETGAGQHGVATATACALLGLDCVIYMGGIDTARQALNVARMRLLGAEVVAVQTGSKTLKDAINEAFRDWVANA  207 (422)
T ss_dssp             TCCEEEEEESSSHHHHHHHHHHHHHTCEEEEEEEHHHHHHSHHHHHHHHHTTCEEEEECSTTSCHHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEecCccHHHHHHHHHHHHcCCcEEEEeCCCcchhhHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence            33334556899999999999999999999999998632   4677899999999999975   78888877755 5555 


Q ss_pred             cCCEe-eCCCCC--cc--c-ccccCcchHHHHhhC----C-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC
Q 020236          146 TGAVL-VHPYND--GR--I-ISGQGTISLEFLEQV----P-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA  214 (329)
Q Consensus       146 ~~~~~-~~~~~n--~~--~-~~g~~t~~~Ei~~ql----~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~  214 (329)
                      .+.+| +++++|  |+  . ..||.+++.||++|+    + .||+||+|+|+||+++|++.+++. .|.+++|+|||.++
T Consensus       208 ~~~~yi~~s~~g~~p~~~~v~~~q~t~g~Ei~~Ql~~~~~~~pD~vvvpvG~GG~~~Gi~~~~~~-~p~v~vigVe~~g~  286 (422)
T 2o2e_A          208 DNTYYCFGTAAGPHPFPTMVRDFQRIIGMEARVQIQGQAGRLPDAVVACVGGGSNAIGIFHAFLD-DPGVRLVGFEAAGD  286 (422)
T ss_dssp             TTEEECCCCSSSCCCCHHHHHHHTTHHHHHHHHHHHHHSSSCCSEEEEEGGGHHHHHTTSGGGTT-CTTCEEEEEEECC-
T ss_pred             CCcEEEeCCccCCCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCCEEEEccCCchhHHHHHHHHhc-CCCCeEEEEecCCC
Confidence            35444 555543  33  2 348999999999997    3 499999999999999999877754 78999999999997


Q ss_pred             ----chHHHHHHcCCeee---------------cCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHH
Q 020236          215 ----NDAAQSKAAGRIIT---------------LLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCY  274 (329)
Q Consensus       215 ----~~~~~~~~~g~~~~---------------~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~  274 (329)
                          +.+..++..|.+..               ....+|+++||+.+ +++..+.+.+...+.++.|+|+|+++++++|+
T Consensus       287 ~~~~~~~~~~l~~g~~~~~~g~~~~~~~~~~g~~~~~~tia~gl~~~~~g~~~~~l~~~~~~~~~~Vsd~e~~~a~~~l~  366 (422)
T 2o2e_A          287 GVETGRHAATFTAGSPGAFHGSFSYLLQDEDGQTIESHSISAGLDYPGVGPEHAWLKEAGRVDYRPITDSEAMDAFGLLC  366 (422)
T ss_dssp             ------------------------------------------------------------CCEEEEECHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHcCCceeccccchhhcccccccccCCceeecccCCCCCCHHHHHHHHhCCeeEEEECHHHHHHHHHHHH
Confidence                45667777775432               22467899999864 66667777777889999999999999999999


Q ss_pred             HHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          275 EILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       275 ~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      ++|||++++++|+++++++++  .++  +.++++||+++|| |++|++.+.++++
T Consensus       367 ~~eGi~~~~esa~A~a~a~~l--~~~--~~~~~~vvvilsG~g~kd~~~~~~~~~  417 (422)
T 2o2e_A          367 RMEGIIPAIESAHAVAGALKL--GVE--LGRGAVIVVNLSGRGDKDVETAAKWFG  417 (422)
T ss_dssp             HHHCCCCCHHHHHHHHHHHHH--HHH--HCTTCEEEEECCSCSSSHHHHHHHHC-
T ss_pred             HHcCCccCchHHHHHHHHHHH--HHh--cCCCCEEEEEeCCCCCCCHHHHHHHHH
Confidence            999999999999999999876  332  3478899999999 5799999998764

>1vb3_A Threonine synthase; PLP-dependent enzyme, lyase; HET: KPA; 2.20A {Escherichia coli} SCOP: c.79.1.1

Probab=100.00  E-value=2.6e-51  Score=389.73  Aligned_cols=298  Identities=15%  Similarity=0.123  Sum_probs=251.4

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCC-CCCCccchhhHHHHH---hcCchhccCCeEEEECCc
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECF-QKGGAFKFRGASNAV---LSLDEDQAIKGVVTHSSG   85 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~-nptGS~KdR~a~~~l---~~a~~~~~~~~vv~~ssG   85 (329)
                      ++.+++.+..++.+.  ++|||+++++       +||+ +|++ |||||||||++.+++   .++ ++++..+|+++|||
T Consensus        67 ~~~~~l~~~~~~~~~--~~TPL~~l~~-------~i~~-~E~~~~pTgSfKdr~a~~l~~~l~~a-~~~~~~~Iv~atsG  135 (428)
T 1vb3_A           67 IPQEILEERVRAAFA--FPAPVANVES-------DVGC-LELFHGPTLAFKDFGGRFMAQMLTHI-AGDKPVTILTATSG  135 (428)
T ss_dssp             SCHHHHHHHHHHHCC--SCCCEEEEET-------TEEE-EECCCSTTSBTHHHHHHHHHHHHHHH-TTTCCEEEEEECSS
T ss_pred             CCHHHHHHHHHHHhC--CCCCeEEecC-------CeEE-eeccCCCcccHHHHHHHHHHHHHHHH-HhcCCCEEEecCCc
Confidence            455666666666554  6899999864       7999 6666 699999999999884   444 34567789999999


Q ss_pred             hHHHHHH-HHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCCEE--EEECCCHHHHHHHHHHHHH------HcCCEeeCCCC
Q 020236           86 NHAAALS-LAAKLRGIPAYIVIPKN-APKCKVENVVRYGGQV--IWSEATMHSRESVASKVLE------ETGAVLVHPYN  155 (329)
Q Consensus        86 N~g~a~A-~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga~v--~~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~  155 (329)
                      |||.|+| .+|+++|++|+||||++ ++..|+++|+.+||+|  +.++++++++.+.++++.+      +.+++++|++ 
T Consensus       136 NtG~A~A~~~a~~~G~~~~I~~P~~~~s~~k~~~m~~~GA~V~~v~v~g~~d~~~~~~~~~~~d~~~~~~~~~~~~n~~-  214 (428)
T 1vb3_A          136 DTGAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANSI-  214 (428)
T ss_dssp             SHHHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEESCHHHHHHHHHHGGGCHHHHHHHTEECCSTT-
T ss_pred             hHHHHHHHHHhhhcCCeEEEEECCCCCCHHHHHHHHhcCCeEEEEEeCCCHHHHHHHHHHHHhchhhhhhcCeeeCCCC-
Confidence            9999999 59999999999999995 9999999999999999  8889999999988888764      3567777874 


Q ss_pred             CcccccccCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCC
Q 020236          156 DGRIISGQGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLE  231 (329)
Q Consensus       156 n~~~~~g~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~  231 (329)
                      ||.++.||.++++||++|++    .||+||+|+|+||+++|++.+++...|.+|+|+|++.+ +.+++++..|...+.+.
T Consensus       215 n~~~~~gq~t~~~Ei~~ql~~~g~~~d~vvvpvG~GG~i~G~~~a~~~g~p~~kii~a~~~~-~~l~~~~~~G~~~~~~~  293 (428)
T 1vb3_A          215 NISRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN-DTVPRFLHDGQWSPKAT  293 (428)
T ss_dssp             SHHHHHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSC-CHHHHHHHHSCCCCCCC
T ss_pred             CHHHHHHHHHHHHHHHHHcccccCCCCEEEEeCCchHHHHHHHHHHHcCCCCCeEEeecCCC-hHHHHHHHcCCcccCCC
Confidence            68899999999999999997    49999999999999999999998877888999999876 46889999998766666


Q ss_pred             CCccccccccCCCccc---HHHHhhc-----CCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCC
Q 020236          232 TNTVADGLRAFLGDLT---WPIVRDL-----VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAW  303 (329)
Q Consensus       232 ~~t~~~gl~~~~~~~~---~~~~~~~-----~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~  303 (329)
                      .+|+++||+...+.+.   +.+.++.     .+..+.|+|+|++++++++ +++|+++||+||++++++++.  .+    
T Consensus       294 ~~tis~g~~i~~p~~~~~~~~l~~~~~~~~~~~~~~~Vsd~e~~~a~~~l-~~eGi~~~p~sa~a~aa~~~~--~~----  366 (428)
T 1vb3_A          294 QATLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMREL-KELGYTSEPHAAVAYRALRDQ--LN----  366 (428)
T ss_dssp             CCCSSGGGCCSSCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHTT--CC----
T ss_pred             CCcccchhcCCCCccHHHHHHHHhcchhhhhCcEEEEECHHHHHHHHHHH-HHCCeEECchHHHHHHHHHHH--hC----
Confidence            7899999987532222   2234444     6899999999999999999 999999999999999999876  33    


Q ss_pred             CCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          304 QDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       304 ~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                       ++++||+++|| |.+|++.+.+.++
T Consensus       367 -~~~~vV~i~tg~~~K~~~~v~~~~~  391 (428)
T 1vb3_A          367 -PGEYGLFLGTAHPAKFKESVEAILG  391 (428)
T ss_dssp             -TTCEEEEEECBCGGGGHHHHHHHHT
T ss_pred             -CCCcEEEEeCCCCCCCHHHHHHHhC
Confidence             56899999998 5899999988764

>4f4f_A Threonine synthase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.90A {Brucella melitensis BV}

Probab=100.00  E-value=3.3e-49  Score=375.76  Aligned_cols=304  Identities=11%  Similarity=0.044  Sum_probs=253.2

Q ss_pred             CCCHHHHHHHHHHhccccC---CCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHH---HhcCc-hhccCCeEEE
Q 020236            9 AANFSSIKEAQKRISLYIH---KTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA---VLSLD-EDQAIKGVVT   81 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~~i~---~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~---l~~a~-~~~~~~~vv~   81 (329)
                      .++.+++.+..++.+..+.   -|||+++..       ++|+|.|++|||||||||++.++   +.++. +++...+|++
T Consensus        71 ~i~~~~l~~~~~~ay~~F~~~~~~pl~~l~~-------~~~~kee~~~PTgSFKDRga~~~~~~l~~a~~~~g~~~~Vv~  143 (468)
T 4f4f_A           71 EIPAADFERMVREAYGTFRHDAVCPLVQTDA-------NEFVLELFHGPTLAFKDVAMQLLARMMDYVLAQRGERATIVG  143 (468)
T ss_dssp             CSCHHHHHHHHHHHHHTSSSTTSSCEEEEET-------TEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCCCCCceEEecC-------CeehHHhccCCcccHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence            3777888887766654332   388887643       79999999999999999999999   66553 3333458999


Q ss_pred             ECCchHH-HHHHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCC-E--EEEECCCHHHHHHHHHHHHHHc------CCEe
Q 020236           82 HSSGNHA-AALSLAAKLRGIPAYIVIPKN-APKCKVENVVRYGG-Q--VIWSEATMHSRESVASKVLEET------GAVL  150 (329)
Q Consensus        82 ~ssGN~g-~a~A~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga-~--v~~~~~~~~~~~~~a~~~~~~~------~~~~  150 (329)
                      +|||||| .++|++|+++|++|+|+||++ +|+.|+.+|+.+|+ +  ++.++++++++.+.++++.++.      ++++
T Consensus       144 ASSGNtG~aa~aa~a~~~Gi~~~I~~P~~~~s~~k~~~~~~~gganV~vv~v~g~fdda~~~~k~~~~d~~~~~~~~~~~  223 (468)
T 4f4f_A          144 ATSGDTGGAAIEAFGGRDNTDIFILFPNGRVSPVQQRQMTSSGFSNVHALSIEGNFDDCQNLVKGMFNDLEFCDALSLSG  223 (468)
T ss_dssp             ECSSHHHHHHHHHHTTCSSEEEEEEEETTCSCHHHHHHHHCSCCTTEEEEEEESCHHHHHHHHHHHHHCHHHHHHHTEEE
T ss_pred             ECCchHHHHHHHHHHhccCCcEEEEeCCCCCCHHHHHHHHhcCCCeEEEeecCCCHHHHHHHHHHHHhccccccccceEe
Confidence            9999999 555777999999999999999 99999999999975 4  5788999999999999987653      5677


Q ss_pred             eCCCCCcccccccCcchHHHHhhCCCCCE---EEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCee
Q 020236          151 VHPYNDGRIISGQGTISLEFLEQVPLLDT---IIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRII  227 (329)
Q Consensus       151 ~~~~~n~~~~~g~~t~~~Ei~~ql~~~d~---vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~  227 (329)
                      +|+ .||.+++||.|+++||++|++.+|.   |+||+|+||+++|++.+.+...|..|+|+| +.++++++++++.|+..
T Consensus       224 vns-in~~ri~GQ~T~~~Ei~~ql~~~d~~v~vvVPvG~GG~i~g~~~Ak~mGlPi~kli~a-~n~~~~l~~~l~~G~~~  301 (468)
T 4f4f_A          224 VNS-INWARIMPQVVYYFTAALSLGAPDRAVSFTVPTGNFGDIFAGYVAKRMGLPIEQLIIA-TNDNDILSRTLESGAYE  301 (468)
T ss_dssp             CCT-TSHHHHGGGHHHHHHHHHHTTTTSSCEEEEEECSSSHHHHHHHHHHHHTCCEEEEEEE-ECSCCHHHHHHHHSEEE
T ss_pred             CCC-CCHHHHHhHHHHHHHHHHhcccCCCCeEEEEEeCCcHHHHHHHHHHHhCCCCCEEEEE-eCCchHHHHHHHcCCce
Confidence            777 5899999999999999999998998   999999999999999885554577899999 88899999999999988


Q ss_pred             ecCCCCccccccccCCCcccHHHHhhcCC---------------------------------cEEEeCHHHHHHHHHHHH
Q 020236          228 TLLETNTVADGLRAFLGDLTWPIVRDLVD---------------------------------DVITVEDKEIIEAMKLCY  274 (329)
Q Consensus       228 ~~~~~~t~~~gl~~~~~~~~~~~~~~~~~---------------------------------~~~~V~d~e~~~a~~~l~  274 (329)
                      ..+...|++++|+...+.++.+++....+                                 ..+.|+|+|+.+++++++
T Consensus       302 ~~~~~~Tia~smdi~~~sN~erl~~~l~~~d~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~VsD~ei~~ai~~l~  381 (468)
T 4f4f_A          302 MRGVAQTTSPSMDIQISSNFERLLFEAHGRDAAAVRGLMQGLKQSGGFTISEKPLSAIRSEFSAGRSTVDETAATIESVL  381 (468)
T ss_dssp             CCCCCCCSCGGGCCSSCTTHHHHHHHHTTTCHHHHHHHHHHHHHHSEEECCHHHHHHHHHHEEEEECCHHHHHHHHHHHH
T ss_pred             ecCCcceeCchhhcCccchHHHHHHHHhccCHHHHHHHHHHHHhcCCeeccHHHHHHHhhcceEEEECHHHHHHHHHHHH
Confidence            87788999999997655444443322211                                 278999999999999999


Q ss_pred             HHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          275 EILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       275 ~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      +++|+++||+||+++++++++  .     .++.++|++.|| +.++.+.+.+.++
T Consensus       382 ~~~g~~vEP~~Ava~aa~~~~--~-----~~~~~~V~l~Ta~~~Kf~~~v~~a~~  429 (468)
T 4f4f_A          382 SKDGYLLDPHSAIGVKVAREK--A-----SGTAPMVVLATAHPAKFPDAVKAACG  429 (468)
T ss_dssp             HHHSCCCCHHHHHHHHHHHHH--C-----CSSSCEEEEECBCGGGSHHHHHHHHS
T ss_pred             HHCCEEECHhHHHHHHHHHHH--h-----CCCCeEEEEecCCccccHHHHHHHhC
Confidence            999999999999999999875  3     256789999998 6888999888763

>1kl7_A Threonine synthase; threonine synthesis, pyridoxal 5-phosphate, beta-family, MON lyase; HET: PLP; 2.70A {Saccharomyces cerevisiae} SCOP: c.79.1.1

Probab=100.00  E-value=1.9e-48  Score=374.93  Aligned_cols=309  Identities=15%  Similarity=0.070  Sum_probs=249.2

Q ss_pred             CCCHHHHHHHHHHhcc---ccCCCCCcc--chhhhhhcCCeEEEEecCCCCCCccchhhHHHHHh---cCc-hhc-----
Q 020236            9 AANFSSIKEAQKRISL---YIHKTPVLS--SETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVL---SLD-EDQ-----   74 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~---~i~~TPl~~--~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~---~a~-~~~-----   74 (329)
                      .++.+++.....+.+.   .-+.|||++  ++++     .+||+|+|++|||||||||++.+++.   +++ +++     
T Consensus        74 ~ip~~~l~~~v~~ay~~f~~~g~TPLv~~~l~~l-----~~l~~K~e~~nPTgSFKDrga~~~~~~~~~a~~~~g~~~~~  148 (514)
T 1kl7_A           74 EIPDADLKDLIKRSYSTFRSDEVTPLVQNVTGDK-----ENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPE  148 (514)
T ss_dssp             TSCHHHHHHHHHHHTTTCSSTTSSCEECCTTCSS-----SCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCS
T ss_pred             cCCHHHHHHHHHHHhhccCCCCCCceeehhcccc-----cchhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence            3677776666554432   356799999  7655     47999999999999999999999844   332 233     


Q ss_pred             ---cCCeEEEECCchHHHHHHHHH--HHcCCCEEEEEcCC-CCHHHHHHH---HHcCCEEEEECCCHHHHHHHHHHHHHH
Q 020236           75 ---AIKGVVTHSSGNHAAALSLAA--KLRGIPAYIVIPKN-APKCKVENV---VRYGGQVIWSEATMHSRESVASKVLEE  145 (329)
Q Consensus        75 ---~~~~vv~~ssGN~g~a~A~~a--~~~G~~~~i~~p~~-~~~~~~~~~---~~~Ga~v~~~~~~~~~~~~~a~~~~~~  145 (329)
                         ...+|+++||||||.| |++|  ++.|++|+|++|++ +++.++.+|   ...|++++.++++++++.+.++++.++
T Consensus       149 ~~~~~~~Iv~ATSGNtG~A-A~~a~a~~~Gi~~~I~~P~~~~S~~q~~qm~~~~g~~~~vv~v~g~fdda~~~vk~l~~~  227 (514)
T 1kl7_A          149 GEKKQITVVGATSGDTGSA-AIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGD  227 (514)
T ss_dssp             SSCCCEEEEEECSSSHHHH-HHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHC
T ss_pred             ccCCCCEEEECCCCcHHHH-HHHHHHhhcCCeEEEEEcCCCCCHHHHHHHhhhcCCCEEEEEcCCCHHHHHHHHHHHHhc
Confidence               2578999999999999 5555  89999999999997 999888887   456778899999999999999999877


Q ss_pred             c------CCEeeCCCCCcccccccCcchHHHHhhC-C----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCC
Q 020236          146 T------GAVLVHPYNDGRIISGQGTISLEFLEQV-P----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGA  214 (329)
Q Consensus       146 ~------~~~~~~~~~n~~~~~g~~t~~~Ei~~ql-~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~  214 (329)
                      .      ++++.|++ |+.+++|+.+.++|+++|+ +    .||+||+|+|+||++.|++...+...|.+|+|+||+.+ 
T Consensus       228 ~~~~~~~~~~~~Ns~-N~~ri~gQ~tyy~e~~~ql~~~~~~~~d~~vvP~GngG~i~a~~~ak~~G~p~~rli~v~~~n-  305 (514)
T 1kl7_A          228 KEFNSKHNVGAVNSI-NWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEN-  305 (514)
T ss_dssp             SSCC--CCBCCCCSC-CHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSC-
T ss_pred             ccccccceeEeeCCC-CHhHHhhHHHHHHHHHHHHhhhcCCCCcEEEEECCchHHHHHHHHHHHcCCCCCEEEEEeCCc-
Confidence            3      34455554 7889999999999999998 3    48999999999999999887555546888999999999 


Q ss_pred             chHHHHHHcCCeee-cCCCCccccccccCCCcccHHHHhhcCC-------------------------------------
Q 020236          215 NDAAQSKAAGRIIT-LLETNTVADGLRAFLGDLTWPIVRDLVD-------------------------------------  256 (329)
Q Consensus       215 ~~~~~~~~~g~~~~-~~~~~t~~~gl~~~~~~~~~~~~~~~~~-------------------------------------  256 (329)
                      ++++++++.|...+ .+...|++++|....+.+..+++....+                                     
T Consensus       306 ~~l~~~~~~G~~~~~~~~~~Tis~amdi~~psn~er~l~~l~~~~~~~~~~~~d~~~v~~~~~~l~~~gg~~~~~~~~~~  385 (514)
T 1kl7_A          306 DILDRFLKSGLYERSDKVAATLSPAMDILISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEG  385 (514)
T ss_dssp             CHHHHHHHHSEEECCSSCCCCSCGGGCCSSCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHH
T ss_pred             chHHHHHhcCCccCCCCCCCeechhhhcCCCCcHHHHHHHHhccccccccccccHHHHHHHHHHHHhcCCeeccHHHHHH
Confidence            78999999998766 5667899999987654444333322211                                     


Q ss_pred             -----cEEEeCHHHHHHHHHHHHHHc----CceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHh
Q 020236          257 -----DVITVEDKEIIEAMKLCYEIL----KVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDS  326 (329)
Q Consensus       257 -----~~~~V~d~e~~~a~~~l~~~e----gi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~  326 (329)
                           ..+.|+|+|+.++++++++++    |+++||+||++++|+++.  .+++ ..+++++|++.|+ |.++.+.+.+.
T Consensus       386 ~~~~f~~~~Vsd~e~~~ai~~l~~~~~~~~G~~~ep~tAv~~aa~~~~--~~~g-~~~~~~vV~l~Ta~~~Kf~~~v~~a  462 (514)
T 1kl7_A          386 ASKDFTSERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERL--IAKD-NDKSIQYISLSTAHPAKFADAVNNA  462 (514)
T ss_dssp             HTTTEEEEECCHHHHHHHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHH--HHHH-CCTTSEEEEEECBCGGGGHHHHHHH
T ss_pred             hhcCceEEEECHHHHHHHHHHHHHhCCCCCCEEEcccHHHHHHHHHHH--HHhc-cCCCCcEEEEECCchhhhHHHHHHH
Confidence                 489999999999999999999    999999999999999887  4443 3467889999998 68999988776


Q ss_pred             hh
Q 020236          327 FR  328 (329)
Q Consensus       327 ~~  328 (329)
                      +.
T Consensus       463 l~  464 (514)
T 1kl7_A          463 LS  464 (514)
T ss_dssp             HT
T ss_pred             hC
Confidence            53

>3v7n_A Threonine synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, lyase; 1.40A {Burkholderia thailandensis}

Probab=100.00  E-value=3.1e-47  Score=362.20  Aligned_cols=308  Identities=11%  Similarity=0.042  Sum_probs=241.6

Q ss_pred             CCCHHHHHHHHHHhccc--cCC----------CCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHH---HhcCchh
Q 020236            9 AANFSSIKEAQKRISLY--IHK----------TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNA---VLSLDED   73 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~~--i~~----------TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~---l~~a~~~   73 (329)
                      -++.+++.+..++.+..  +..          |||+++..   ..+.++|+|.|++|||||||||++.++   +..+.++
T Consensus        71 ~i~~~~l~~~i~~ay~~~~F~~~~~~~~~~~i~Pl~~l~~---~~~~~l~vkee~~~PTgSFKDRga~~~~~ll~~a~~~  147 (487)
T 3v7n_A           71 DIAAADLRAITRRTYTADVYRHARRGGNAADITPLTTLGT---ENGAPVSLLELSNGPTLAFKDMAMQLLGNLFEYTLAK  147 (487)
T ss_dssp             SSCHHHHHHHHHHHSCTTTTCCCCSSCCGGGSSCEEEEEE---ETTEEEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHhCcccCCCcccccccccCceeEEecC---CCCcceeHHhhccCCcCcHHHHHHHHHHHHHHHHHHh
Confidence            37788888888877663  443          78887642   001239999999999999999999998   7766433


Q ss_pred             -ccCCeEEEECCchHHHHHHHHHH-HcCCCEEEEEcCC-CCHHHHHHHHHcCC---EEEEECCCHHHHHHHHHHHHH---
Q 020236           74 -QAIKGVVTHSSGNHAAALSLAAK-LRGIPAYIVIPKN-APKCKVENVVRYGG---QVIWSEATMHSRESVASKVLE---  144 (329)
Q Consensus        74 -~~~~~vv~~ssGN~g~a~A~~a~-~~G~~~~i~~p~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~a~~~~~---  144 (329)
                       +...+|+++||||||.|+|++++ +.|++|+|++|++ +|+.|+++|+.+|+   +++.+++++++|++.++++.+   
T Consensus       148 ~g~~~~Vv~ASSGNtG~Aaa~a~~~~~Gi~~~I~~P~~~~s~~k~~qm~~~Ga~nv~vv~v~G~fDda~~~vk~~~~d~~  227 (487)
T 3v7n_A          148 HGETLNILGATSGDTGSAAEYAMRGKEGVRVFMLSPHKKMSAFQTAQMYSLQDPNIFNLAVNGVFDDCQDIVKAVSNDHA  227 (487)
T ss_dssp             TTCCEEEEEECSSHHHHHHHHHHTTCTTEEEEEEEETTCSCHHHHHHHHTCCCTTEEEEEEESCHHHHHHHHHHHHTCHH
T ss_pred             cCCCcEEEEeCChHHHHHHHHHHHhccCCeEEEEECCCCCCHHHHHHHHhcCCCcEEEEEECCCHHHHHHHHHHhhhchH
Confidence             33456999999999999777776 8999999999998 99999999999998   788999999999999998876   


Q ss_pred             ---HcCCEeeCCCCCcccccccCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchH
Q 020236          145 ---ETGAVLVHPYNDGRIISGQGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDA  217 (329)
Q Consensus       145 ---~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~  217 (329)
                         +.+++++|++ ||.+++|+.+.++|+..|+.    .+|+|+||+|+||+++|++.+.+...|.+|+|++++++ +++
T Consensus       228 ~~~~~~l~~vns~-Np~ri~gQ~tyy~~~~~el~~~~~~~d~vvVP~GngG~i~g~~~A~~mGlp~~rli~a~~~n-~~l  305 (487)
T 3v7n_A          228 FKAQQKIGTVNSI-NWARVVAQVVYYFKGYFAATRSNDERVSFTVPSGNFGNVCAGHIARMMGLPIEKLVVATNEN-DVL  305 (487)
T ss_dssp             HHHHTTEECCSTT-CHHHHHHHHHHHHHHHHHTCSSTTCCEEEEEGGGCHHHHHHHHHHHHTTCCEEEEEEECTTC-HHH
T ss_pred             HHhhcCeeeeCCC-CHHHHHhHHHHHHHHHHHHHhcCCCCcEEEEecCchHHHHHHHHHHHcCCCCceEEEEeCCC-cHH
Confidence               3467788875 79999999988888888873    59999999999999999998766555778999999998 899


Q ss_pred             HHHHHcCCeeecCCCCcc---ccccccCCCcccHHHHhhcC-----------------------------------CcEE
Q 020236          218 AQSKAAGRIITLLETNTV---ADGLRAFLGDLTWPIVRDLV-----------------------------------DDVI  259 (329)
Q Consensus       218 ~~~~~~g~~~~~~~~~t~---~~gl~~~~~~~~~~~~~~~~-----------------------------------~~~~  259 (329)
                      +++++.|+..+.+..+|+   +++|++..+.+..+++....                                   ...+
T Consensus       306 ~~~~~~G~~~~~~~~~Ti~t~s~smdI~~psn~er~l~~l~~~d~~~~~~~m~~l~~~g~~~l~~~~~~~~~~~~~~~~~  385 (487)
T 3v7n_A          306 DEFFRTGAYRVRSAQDTYHTSSPSMDISKASNFERFVFDLLGRDPARVVQLFRDVEQKGGFDLAASGDFARVAEFGFVSG  385 (487)
T ss_dssp             HHHHHHSEEEC------------------CHHHHHHHHHHTTTCHHHHHHHHHHHHHHSEEETTTTTCTHHHHHTTEEEE
T ss_pred             HHHHHcCCcccCCCCCccccCCchhccCCCccHHHHHHHHhCCCHHHHHHHHHHHHhcCCeecccchhHHHHHhhcceEE
Confidence            999999998777777888   99999865544444433221                                   2357


Q ss_pred             EeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          260 TVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       260 ~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      .|+|+|+.++++++++++|+++||+||++++++.++  .+     ++.++|++.|+ +.++.+.+.+.+.
T Consensus       386 ~VsDee~~~air~l~~~~G~l~dPhtAva~aaa~~~--~~-----~~~~~V~l~Ta~p~Kf~~~v~~a~~  448 (487)
T 3v7n_A          386 RSTHADRIATIRDVFERYRTMIDTHTADGLKVAREH--LR-----PGVPMVVLETAQPIKFGESIREALG  448 (487)
T ss_dssp             CCCHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHTTS--CC-----TTSCEEEEECBCGGGGHHHHHHHHS
T ss_pred             EECHHHHHHHHHHHHHHcCEEEChhHHHHHHHHHHh--hC-----CCCcEEEEecCCccccHHHHHHHhC
Confidence            899999999999999999999999999999999876  32     46788999998 6889999988764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=94.51  E-value=1.2  Score=34.19  Aligned_cols=97  Identities=16%  Similarity=0.251  Sum_probs=68.3

Q ss_pred             CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCC
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYN  155 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  155 (329)
                      ..+++....|..|..+|...+..|.+++++-.   .+.+.+.++..|..++.-+.+..                      
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~---~~~~~~~~~~~g~~~i~gd~~~~----------------------   61 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIET---SRTRVDELRERGVRAVLGNAANE----------------------   61 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEES---CHHHHHHHHHTTCEEEESCTTSH----------------------
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHcCCCEEECCCCCH----------------------
Confidence            45688888999999999999999999888854   35566666667776654333211                      


Q ss_pred             CcccccccCcchHHHHhhC--CCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEe
Q 020236          156 DGRIISGQGTISLEFLEQV--PLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAE  210 (329)
Q Consensus       156 n~~~~~g~~t~~~Ei~~ql--~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~  210 (329)
                                   +++++.  .+.|.++++++.-....-+...++..+|..++++..
T Consensus        62 -------------~~l~~a~i~~ad~vi~~~~~~~~n~~~~~~a~~~~~~~~iiar~  105 (140)
T 3fwz_A           62 -------------EIMQLAHLECAKWLILTIPNGYEAGEIVASARAKNPDIEIIARA  105 (140)
T ss_dssp             -------------HHHHHTTGGGCSEEEECCSCHHHHHHHHHHHHHHCSSSEEEEEE
T ss_pred             -------------HHHHhcCcccCCEEEEECCChHHHHHHHHHHHHHCCCCeEEEEE
Confidence                         222222  257899999888655444566778888989988765

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.31  E-value=2.4  Score=33.98  Aligned_cols=97  Identities=13%  Similarity=0.031  Sum_probs=64.9

Q ss_pred             CCeEEEECCchHHHHHHHHHHHc-CCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCC
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLR-GIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPY  154 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~-G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  154 (329)
                      ..+++....|..|..+|...... |.+++++-.   ++.+.+.++..|.+++..+.+..                     
T Consensus        39 ~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~---~~~~~~~~~~~g~~~~~gd~~~~---------------------   94 (183)
T 3c85_A           39 HAQVLILGMGRIGTGAYDELRARYGKISLGIEI---REEAAQQHRSEGRNVISGDATDP---------------------   94 (183)
T ss_dssp             TCSEEEECCSHHHHHHHHHHHHHHCSCEEEEES---CHHHHHHHHHTTCCEEECCTTCH---------------------
T ss_pred             CCcEEEECCCHHHHHHHHHHHhccCCeEEEEEC---CHHHHHHHHHCCCCEEEcCCCCH---------------------
Confidence            34577778999999999998888 998887743   34555666666666544332110                     


Q ss_pred             CCcccccccCcchHHHHhh---CCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEe
Q 020236          155 NDGRIISGQGTISLEFLEQ---VPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAE  210 (329)
Q Consensus       155 ~n~~~~~g~~t~~~Ei~~q---l~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~  210 (329)
                                    +.+++   +.+.|.||++++......-+...++..+|..+++...
T Consensus        95 --------------~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~  139 (183)
T 3c85_A           95 --------------DFWERILDTGHVKLVLLAMPHHQGNQTALEQLQRRNYKGQIAAIA  139 (183)
T ss_dssp             --------------HHHHTBCSCCCCCEEEECCSSHHHHHHHHHHHHHTTCCSEEEEEE
T ss_pred             --------------HHHHhccCCCCCCEEEEeCCChHHHHHHHHHHHHHCCCCEEEEEE
Confidence                          11212   2367999999887665555666778878888887653

>1vp8_A Hypothetical protein AF0103; putative pyruvate kinase, structural genomics, joint center structural genomics, JCSG; HET: MSE FMN; 1.30A {Archaeoglobus fulgidus} SCOP: c.49.1.2

Probab=89.66  E-value=1.2  Score=36.52  Aligned_cols=146  Identities=16%  Similarity=0.175  Sum_probs=85.5

Q ss_pred             CCCCccchhhHHHHHhcCchhccCCeEEEE-CCchHHHHHHHHHHHcCCCEEEEE-------cC--CCCHHHHHHHHHcC
Q 020236           53 QKGGAFKFRGASNAVLSLDEDQAIKGVVTH-SSGNHAAALSLAAKLRGIPAYIVI-------PK--NAPKCKVENVVRYG  122 (329)
Q Consensus        53 nptGS~KdR~a~~~l~~a~~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~i~~-------p~--~~~~~~~~~~~~~G  122 (329)
                      +|+--+=+..+...+.++ ++.+.+.||.+ |+|.++..++-..  -|+++++|.       |.  ..+++.++.++..|
T Consensus        22 ~~G~eNT~~tl~la~era-~e~~Ik~iVVAS~sG~TA~k~~e~~--~~i~lVvVTh~~GF~~pg~~e~~~e~~~~L~~~G   98 (201)
T 1vp8_A           22 KPGRENTEETLRLAVERA-KELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRG   98 (201)
T ss_dssp             SCSGGGHHHHHHHHHHHH-HHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTT
T ss_pred             CCCcccHHHHHHHHHHHH-HHcCCCEEEEEeCCChHHHHHHHHh--cCCeEEEEeCcCCCCCCCCCcCCHHHHHHHHhCC
Confidence            455566677777777776 44456666665 6699987666643  688898888       42  36889999999999


Q ss_pred             CEEEEECCCHHHHHHHHHHHHHHcCCEeeCC-CCCccc-ccccCc-chHHHHh---hCC--CCCEEEEeCCCChHHHHHH
Q 020236          123 GQVIWSEATMHSRESVASKVLEETGAVLVHP-YNDGRI-ISGQGT-ISLEFLE---QVP--LLDTIIVPISGGGLISGVA  194 (329)
Q Consensus       123 a~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~n~~~-~~g~~t-~~~Ei~~---ql~--~~d~vv~~~GtGg~~~Gi~  194 (329)
                      .+|+...--+....+.   +.++.|.++... ..+-++ ..|+++ .+.||.-   +.+  ..+.|+...|||..     
T Consensus        99 ~~V~t~tH~lsgveR~---is~kfGG~~p~eiiA~tLR~~fgqG~KV~vEi~lMAaDAGlIp~eeVIAiGGT~~G-----  170 (201)
T 1vp8_A           99 AKIVRQSHILSGLERS---ISRKLGGVSRTEAIAEALRSLFGHGLKVCVEITIMAADSGAIPIEEVVAVGGRSRG-----  170 (201)
T ss_dssp             CEEEECCCTTTTTHHH---HHHHTCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHTTSSCSSCEEEEECSSSS-----
T ss_pred             CEEEEEeccccchhHH---HHHhcCCCCHHHHHHHHHHHHhcCCceEEEEEeeeecccCCCCcceEEEEccccCC-----
Confidence            9999765433222211   223333333221 123344 555554 5567642   223  34566666555432     


Q ss_pred             HHHHHhCCCCEEEEEecCCCchH
Q 020236          195 LAAKSIKPAIRILAAEPIGANDA  217 (329)
Q Consensus       195 ~~~k~~~~~~~vi~v~~~~~~~~  217 (329)
                             -++ .+.+.|..+..+
T Consensus       171 -------aDT-AlVirPAhs~~f  185 (201)
T 1vp8_A          171 -------ADT-AVVIRPAHMNNF  185 (201)
T ss_dssp             -------CCE-EEEEECCCTTSG
T ss_pred             -------cce-EEEEeecccCCc
Confidence                   244 345667766544

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.51  E-value=3  Score=38.62  Aligned_cols=98  Identities=16%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCC
Q 020236           77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYND  156 (329)
Q Consensus        77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n  156 (329)
                      .+|+.+..|..|..+|..-...|++++++-.   .+.+++.++..|..++.-+.+.                        
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~---d~~~v~~~~~~g~~vi~GDat~------------------------   57 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDH---DPDHIETLRKFGMKVFYGDATR------------------------   57 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEEC---CHHHHHHHHHTTCCCEESCTTC------------------------
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHhCCCeEEEcCCCC------------------------
Confidence            4688889999999999999999999888743   3555666666665544433211                        


Q ss_pred             cccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecC
Q 020236          157 GRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPI  212 (329)
Q Consensus       157 ~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~  212 (329)
                                 .+++++.+  +.|.||++++.-..-.-+....|..+|+.+||+-...
T Consensus        58 -----------~~~L~~agi~~A~~viv~~~~~~~n~~i~~~ar~~~p~~~Iiara~~  104 (413)
T 3l9w_A           58 -----------MDLLESAGAAKAEVLINAIDDPQTNLQLTEMVKEHFPHLQIIARARD  104 (413)
T ss_dssp             -----------HHHHHHTTTTTCSEEEECCSSHHHHHHHHHHHHHHCTTCEEEEEESS
T ss_pred             -----------HHHHHhcCCCccCEEEECCCChHHHHHHHHHHHHhCCCCeEEEEECC
Confidence                       23444433  5788999888866666677778888888888886543

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=85.37  E-value=3.4  Score=32.10  Aligned_cols=98  Identities=13%  Similarity=0.166  Sum_probs=61.2

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHH-HcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCC
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVV-RYGGQVIWSEATMHSRESVASKVLEETGAVLVHP  153 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~-~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~  153 (329)
                      ....++....|..|..+|...+..|.+++++-+.   +.+.+.++ ..|..++..+..                      
T Consensus        18 ~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~---~~~~~~~~~~~g~~~~~~d~~----------------------   72 (155)
T 2g1u_A           18 KSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKN---EYAFHRLNSEFSGFTVVGDAA----------------------   72 (155)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC---GGGGGGSCTTCCSEEEESCTT----------------------
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECC---HHHHHHHHhcCCCcEEEecCC----------------------
Confidence            3456777788999999999999999987776543   22333333 456554332111                      


Q ss_pred             CCCcccccccCcchHHHHhh--CCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEe
Q 020236          154 YNDGRIISGQGTISLEFLEQ--VPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAE  210 (329)
Q Consensus       154 ~~n~~~~~g~~t~~~Ei~~q--l~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~  210 (329)
                        +           .+.+.+  +...|.||++++.-....-+....+...+..++++..
T Consensus        73 --~-----------~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~~~~~~~~~~~iv~~~  118 (155)
T 2g1u_A           73 --E-----------FETLKECGMEKADMVFAFTNDDSTNFFISMNARYMFNVENVIARV  118 (155)
T ss_dssp             --S-----------HHHHHTTTGGGCSEEEECSSCHHHHHHHHHHHHHTSCCSEEEEEC
T ss_pred             --C-----------HHHHHHcCcccCCEEEEEeCCcHHHHHHHHHHHHHCCCCeEEEEE
Confidence              0           011111  2357999999988665555555566656777777765

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=84.59  E-value=14  Score=31.42  Aligned_cols=42  Identities=12%  Similarity=0.265  Sum_probs=30.4

Q ss_pred             HHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhC----CCCEEEEEec
Q 020236          168 LEFLEQVPLLDTIIVPISGGGLISGVALAAKSIK----PAIRILAAEP  211 (329)
Q Consensus       168 ~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~----~~~~vi~v~~  211 (329)
                      .+++++-++||+||+.  +.....|+..++++.+    .++.|+|.+.
T Consensus       178 ~~~l~~~~~~~ai~~~--~d~~a~g~~~al~~~g~~vP~di~vvg~d~  223 (291)
T 3egc_A          178 IKVLTGADRPTALLTS--SHRITEGAMQALNVLGLRYGPDVEIVSFDN  223 (291)
T ss_dssp             HHHHTC-CCCSEEEES--SHHHHHHHHHHHHHHTCCBTTTBEEEEESC
T ss_pred             HHHHhCCCCCcEEEEC--CcHHHHHHHHHHHHcCCCCCCceEEEEecC
Confidence            4455444579999974  5667779999999987    3688888864

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=82.89  E-value=9.9  Score=31.88  Aligned_cols=43  Identities=12%  Similarity=0.158  Sum_probs=31.6

Q ss_pred             HHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhC---CCCEEEEEecC
Q 020236          168 LEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIK---PAIRILAAEPI  212 (329)
Q Consensus       168 ~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~---~~~~vi~v~~~  212 (329)
                      .+++++-+ +||+||+.  +.....|+..++++.+   .++.|+|.+..
T Consensus       171 ~~~l~~~~~~~~ai~~~--~d~~a~g~~~al~~~g~vp~di~vvg~d~~  217 (272)
T 3o74_A          171 QQLIDDLGGLPDALVTT--SYVLLQGVFDTLQARPVDSRQLQLGTFGDN  217 (272)
T ss_dssp             HHHHHHHTSCCSEEEES--SHHHHHHHHHHHHTSCGGGCCCEEEEESCC
T ss_pred             HHHHhcCCCCCcEEEEe--CchHHHHHHHHHHHcCCCccceEEEEeCCh
Confidence            44555555 69999885  5667779999999887   46888888643

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=81.41  E-value=5.7  Score=34.07  Aligned_cols=73  Identities=16%  Similarity=0.002  Sum_probs=48.6

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHHcC
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKN-APKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEETG  147 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~~~  147 (329)
                      ++..||+..++.-|+++|..-...|.++++.-... .-....+.++..|.+++.+..|   .++..+..++..++.+
T Consensus         9 gKvalVTGas~GIG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G   85 (255)
T 4g81_D            9 GKTALVTGSARGLGFAYAEGLAAAGARVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGI   85 (255)
T ss_dssp             TCEEEETTCSSHHHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCC
Confidence            45568888888899999999888998766543211 1123355677788888877654   4555666666666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d1v71a1	318	c.79.1.1 (A:6-323) Hypothetical protein C320.14 (S	1e-66
d1tdja1	331	c.79.1.1 (A:5-335) Threonine deaminase {Escherichi	1e-61
d1ve5a1	310	c.79.1.1 (A:2-311) Threonine deaminase {Thermus th	1e-59
d1o58a_	293	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	3e-42
d1p5ja_	319	c.79.1.1 (A:) L-serine dehydratase {Human (Homo sa	7e-42
d1jbqa_	355	c.79.1.1 (A:) Cystathionine beta-synthase {Human (	2e-35
d1ve1a1	302	c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (C	2e-35
d1v7ca_	351	c.79.1.1 (A:) Threonine synthase {Thermus thermoph	4e-35
d1z7wa1	320	c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (C	5e-33
d1fcja_	302	c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cystei	2e-31
d1j0aa_	325	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	6e-31
d1tyza_	338	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	8e-31
d1f2da_	341	c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate de	1e-29
d2bhsa1	292	c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (C	3e-28
d1e5xa_	477	c.79.1.1 (A:) Threonine synthase {Mouse-ear cress	1e-25
d1v8za1	386	c.79.1.1 (A:1-386) Tryptophan synthase, beta-subun	2e-25
d1y7la1	310	c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (C	5e-25
d1wkva1	382	c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (C	3e-24
d1qopb_	390	c.79.1.1 (B:) Tryptophan synthase, beta-subunit {S	1e-22

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 318

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  210 bits (534), Expect = 1e-66
 Identities = 131/313 (41%), Positives = 191/313 (61%), Gaps = 6/313 (1%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
           +  +  A +RI  + +KTPVL+S T+N      +FFKCE FQK GAFKFRGA NA+  L+
Sbjct: 5   YDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLN 64

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
           E Q   GV+T SSGNHA A++L+AK+ GIPA I++P +AP+ KV     YGGQVI  +  
Sbjct: 65  EAQRKAGVLTFSSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY 124

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLIS 191
              RE +A ++ E  G  ++ PY+   +++GQGT + E  E+V  LD + V + GGGL+S
Sbjct: 125 KDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAKELFEEVGPLDALFVCLGGGGLLS 184

Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPI 250
           G ALAA+   P   +   EP   ND  QS   G I+ +    T+ADG +   LG+ T+ I
Sbjct: 185 GSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYTFSI 244

Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
           +++ VDD++TV D+E+I+ +K     +K+ VEP+G +  AA              +K+IG
Sbjct: 245 IKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAAR-----AMKEKLKNKRIG 299

Query: 311 IVLSGGNVDLGVL 323
           I++SGGNVD+   
Sbjct: 300 IIISGGNVDIERY 312

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]} Length = 331

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

 Score =  197 bits (502), Expect = 1e-61
 Identities = 97/304 (31%), Positives = 160/304 (52%), Gaps = 4/304 (1%)

Query: 21  RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVV 80
            +      TP+   E L+S     +  K E  Q   +FK RGA   +  L E+Q   GV+
Sbjct: 20  PVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVI 79

Query: 81  THSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVAS 140
           T S+GNHA  ++ ++   G+ A IV+P      KV+ V  +GG+V+   A     ++ A 
Sbjct: 80  TASAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAI 139

Query: 141 KVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSI 200
           ++ ++ G   V P++   +I+GQGT++LE L+Q   LD + VP+ GGGL +GVA+  K +
Sbjct: 140 ELSQQQGFTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQL 199

Query: 201 KPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA-FLGDLTWPIVRDLVDDVI 259
            P I+++A E   +     +  AG  + L      A+G+    +GD T+ + ++ +DD+I
Sbjct: 200 MPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDETFRLCQEYLDDII 259

Query: 260 TVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVD 319
           TV+   I  AMK  +E ++   EPSGA+ LA +       N      +++  +LSG NV+
Sbjct: 260 TVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYIALHNIR---GERLAHILSGANVN 316

Query: 320 LGVL 323
              L
Sbjct: 317 FHGL 320

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

 Score =  191 bits (486), Expect = 1e-59
 Identities = 118/315 (37%), Positives = 182/315 (57%), Gaps = 15/315 (4%)

Query: 12  FSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD 71
              +  A +RI+ Y H+TP+L+S  L+ + G+ L  K E  QK G+FK RGA +  L+L+
Sbjct: 3   LQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE 62

Query: 72  EDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT 131
             +   G++  SSGNHA  ++ AA++ G+ A +V+P++A   K      YG +V+    T
Sbjct: 63  NPK---GLLAVSSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVT 119

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTI----IVPISGG 187
             +RE VA  + EETG  L+HP++D  +I+GQGT  LE L Q   +       + P+ GG
Sbjct: 120 AKNREEVARALQEETGYALIHPFDDPLVIAGQGTAGLELLAQAGRMGVFPGAVLAPVGGG 179

Query: 188 GLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRA--FLGD 245
           GL++G+A A K++ P   +L  EP  A+DA +S  AGRI+ L               LG+
Sbjct: 180 GLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSLGE 239

Query: 246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQD 305
            T+PI+R+ VD ++TV ++ ++EA +L +   K  VEP+GA+ LAAVL  G R       
Sbjct: 240 RTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEHGARLP----- 294

Query: 306 SKKIGIVLSGGNVDL 320
            + + ++LSGGN D 
Sbjct: 295 -QTLALLLSGGNRDF 308

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]} Length = 293

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

 Score =  146 bits (368), Expect = 3e-42
 Identities = 68/303 (22%), Positives = 128/303 (42%), Gaps = 25/303 (8%)

Query: 20  KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK-G 78
             +   I  TP++  ++++S     +F K E    GG+ K R A   +L  ++   +K G
Sbjct: 2   HMMERLIGSTPIVRLDSIDS----RIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNG 57

Query: 79  VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW--SEATMHSRE 136
           +V  +SGN   A+++    RG    + +P+     + + +   G +++    E  M    
Sbjct: 58  IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAV 117

Query: 137 SVASKVLEETGAVLVHPYNDG-RIISGQGTISLEFLEQVP-LLDTIIVPISGGGLISGVA 194
             A ++  ETGA +++ + +   + S Q T   E L+Q+   +D  +  +  GG ISGV 
Sbjct: 118 EKALEISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGTGGTISGVG 177

Query: 195 LAAKSIKP-AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRD 253
              K      ++I+A EP  +   +  +     I       +  G       +   + R 
Sbjct: 178 RVLKGFFGNGVKIVAVEPAKSPVLSGGQPGKHAIQ-----GIGAGF------VPKILDRS 226

Query: 254 LVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVL 313
           ++D+VITVED+E  E  +   +   + V  S    +AA L    +  P      ++  V 
Sbjct: 227 VIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKVAQKLGP----DARVVTVA 282

Query: 314 SGG 316
              
Sbjct: 283 PDH 285

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]} Length = 319

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  145 bits (366), Expect = 7e-42
 Identities = 71/308 (23%), Positives = 122/308 (39%), Gaps = 10/308 (3%)

Query: 25  YIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSS 84
              KTP+  S  L+ M+G S++ K +  Q  G+FK RG  +        Q     V  S+
Sbjct: 4   LHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRW-AKQGCAHFVCSSA 62

Query: 85  GNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKV-- 142
           GN   A + AA+  G+PA IV+P   P   +E +   G         +     +A  +  
Sbjct: 63  GNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAKALAK 122

Query: 143 LEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKP 202
                  +    +          +             I + + GGGL+ GV    +    
Sbjct: 123 NNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIALSVGGGGLLCGVVQGLQECGW 182

Query: 203 A-IRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDVIT 260
             + ++A E  GA+    +  AG++++L +  +VA  L    +G     + ++       
Sbjct: 183 GDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSEV 242

Query: 261 VEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRK-----NPAWQDSKKIGIVLSG 315
           + D+E + A++   +  K+ VEP+    LAAV S   +K     N        + IV  G
Sbjct: 243 ISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGG 302

Query: 316 GNVDLGVL 323
            N+ L  L
Sbjct: 303 SNISLAQL 310

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]} Length = 355

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  129 bits (325), Expect = 2e-35
 Identities = 63/304 (20%), Positives = 114/304 (37%), Gaps = 23/304 (7%)

Query: 26  IHKTPVLSSETLNSMSGRS--LFFKCECFQKGGAFKFRGASNAVLSLDEDQAI---KGVV 80
           I  TP++    +    G    L  KCE F  GG+ K R +   +   + D  +     ++
Sbjct: 42  IGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTII 101

Query: 81  THSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI-----WSEATMHSR 135
             +SGN    L+LAA +RG    IV+P+     KV+ +   G +++         +  S 
Sbjct: 102 EPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESH 161

Query: 136 ESVASKVLEETGA--VLVHPYNDGRIISGQGTISLEFLEQVPL-LDTIIVPISGGGLISG 192
             VA ++  E     +L    N    ++   T + E L+Q    LD ++  +  GG I+G
Sbjct: 162 VGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVASVGTGGTITG 221

Query: 193 VALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVR 252
           +A   K   P  RI+  +P G+  A   +      T  E   +          +   + R
Sbjct: 222 IARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTTYEVEGIGYDF------IPTVLDR 275

Query: 253 DLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIV 312
            +VD      D+E     ++      +    S    +A  +             ++  ++
Sbjct: 276 TVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKAAQELQE----GQRCVVI 331

Query: 313 LSGG 316
           L   
Sbjct: 332 LPDS 335

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

 Score =  128 bits (321), Expect = 2e-35
 Identities = 58/305 (19%), Positives = 111/305 (36%), Gaps = 24/305 (7%)

Query: 21  RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK--- 77
           R+   I KTPV+    +       ++ K E    GG+ K R A   +   +E   ++   
Sbjct: 2   RVEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGS 61

Query: 78  --GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRY--GGQVIWSEATMH 133
              +V  +SGN    L++ A  RG    + +P    + +   +  +     +   E  M 
Sbjct: 62  GQVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRML 121

Query: 134 SRESVASKVLEETGAVLVHPYNDGR-IISGQGTISLEFLEQVP-LLDTIIVPISGGGLIS 191
           +    A ++ EE GA +   + +   + +   T   E  E +   +D  +     GG I+
Sbjct: 122 AAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181

Query: 192 GVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV 251
           GV    K   P ++++A EP  +N  +  K        +             G +   + 
Sbjct: 182 GVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQHGFQGMGP-----------GFIPENLD 230

Query: 252 RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGI 311
             L+D VI V +++     +       + +  S    + A L       P     K++  
Sbjct: 231 LSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQVARELGP----GKRVAC 286

Query: 312 VLSGG 316
           +   G
Sbjct: 287 ISPDG 291

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]} Length = 351

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

 Score =  128 bits (322), Expect = 4e-35
 Identities = 63/319 (19%), Positives = 104/319 (32%), Gaps = 16/319 (5%)

Query: 15  IKEAQKRISLYIHKTPV--LSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDE 72
           + E    ISL    TP+  L         G  L+ K E     G+FK RG + AV S   
Sbjct: 15  VSEKTPVISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAV-SKAV 73

Query: 73  DQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATM 132
           +   + V   S+GN AA+ +  A   GI A +V+P               G  I      
Sbjct: 74  EGGAQAVACASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVEGN 133

Query: 133 HSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTIIVPISGGGLISG 192
                  ++ L E   V +    +   + GQ T++ E ++++           G      
Sbjct: 134 FDDALRLTQKLTEAFPVALVNSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNIT 193

Query: 193 VALAA-------KSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD 245
                          K   R+L  +  GA      +   R  TL     + +        
Sbjct: 194 AHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGRPVERPETLATAIRIGNPAS---WQ 250

Query: 246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQD 305
                  +    +  V D+EI+ A +       +  EP+ A  +A V      +    + 
Sbjct: 251 GAVRAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFK--LLREGRLEP 308

Query: 306 SKKIGIVLSG-GNVDLGVL 323
              + + L+G G  D    
Sbjct: 309 ESTVVLTLTGHGLKDPATA 327

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 320

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  122 bits (306), Expect = 5e-33
 Identities = 54/320 (16%), Positives = 112/320 (35%), Gaps = 23/320 (7%)

Query: 20  KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK-- 77
           K ++  I  TP++    +       +  K E  +   + K R   + +   ++   IK  
Sbjct: 5   KDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPG 64

Query: 78  --GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVI---WSEATM 132
              ++  +SGN    L+  A  +G    I +P +    +   ++ +G +++    ++   
Sbjct: 65  ESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMK 124

Query: 133 HSRESVASKVLEETGAVLVHPYN-DGRIISGQGTISLEFLEQV-PLLDTIIVPISGGGLI 190
            +       + +     ++  +           T   E  +     +D  +  I  GG I
Sbjct: 125 GAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTI 184

Query: 191 SGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPI 250
           +G     K     +++   EP+ +   +  K     I  +             G +   +
Sbjct: 185 TGAGKYLKEQNANVKLYGVEPVESAILSGGKPGPHKIQGIGA-----------GFIPSVL 233

Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIG 310
             DL+D+V+ V   E I+  +       + V  S     AA +     + P       + 
Sbjct: 234 NVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAI--KLAQRPENAGKLFVA 291

Query: 311 IVLSGGNVDLG-VLWDSFRK 329
           I  S G   L  VL+D+ RK
Sbjct: 292 IFPSFGERYLSTVLFDATRK 311

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]} Length = 302

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

 Score =  117 bits (294), Expect = 2e-31
 Identities = 51/283 (18%), Positives = 100/283 (35%), Gaps = 15/283 (5%)

Query: 20  KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGV 79
           +  SL I  TP++    LN +    +  K E      + K R  +N +   ++   +K  
Sbjct: 5   EDNSLTIGHTPLVR---LNRIGNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPG 61

Query: 80  VTH---SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEAT----- 131
           V     ++GN   AL+  A  RG    + +P+     + + +   G  ++ +E       
Sbjct: 62  VELVEPTNGNTGIALAYVAAARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKG 121

Query: 132 MHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLI 190
              +         +   +L    N       + T   E  E     +D  I  +  GG +
Sbjct: 122 AIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEIWEDTDGQVDVFISGVGTGGTL 181

Query: 191 SGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPI 250
           +GV    K  K    ++       +    ++A          + +  G+ A  G +   +
Sbjct: 182 TGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEIKPGPHKI-QGIGA--GFIPGNL 238

Query: 251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVL 293
              L+D V+ + ++E I   +   E   +    S    +AA L
Sbjct: 239 DLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAAL 281

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 325

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score =  117 bits (292), Expect = 6e-31
 Identities = 49/323 (15%), Positives = 94/323 (29%), Gaps = 25/323 (7%)

Query: 11  NFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQ--KGGAFKFRGASNAVL 68
              ++     R+ L   +TP+     ++   G  ++ K +       G  K R     + 
Sbjct: 4   KIFALLAKFPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLG 63

Query: 69  S-LDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVEN--------VV 119
             L +   +   V     NHA    LAAK  G+ A +V+                     
Sbjct: 64  DALSKGADVVITVGAVHSNHAFVTGLAAKKLGLDAILVLRGKEELKGNYLLDKIMGIETR 123

Query: 120 RYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDG-RIISGQGTISLEFLEQVPLLD 178
            Y  +  +         +   K       V+          +     +     +     D
Sbjct: 124 VYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRAVGEIATQSEVKFD 183

Query: 179 TIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADG 238
           +I+V    GG ++G++L    +   IR +        +   SK    I    E   V   
Sbjct: 184 SIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLIKEAAELLGV--- 240

Query: 239 LRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEP-SGAIGLAAVLSDGF 297
                     P + D           E+ + ++       + ++P         ++ D  
Sbjct: 241 -----KVEVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLV-DLA 294

Query: 298 RKNPAWQDSKKIGIVLSGGNVDL 320
           RK       +KI  + +GG    
Sbjct: 295 RKGEL---GEKILFIHTGGISGT 314

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]} Length = 338

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

 Score =  116 bits (291), Expect = 8e-31
 Identities = 46/335 (13%), Positives = 91/335 (27%), Gaps = 33/335 (9%)

Query: 21  RISLYIHKTPVLSSETLNSMSGR--SLFFKCECFQKGGAF---KFRGASNAVLS-LDEDQ 74
           R  L    TP+     L+   G    L+ K E    G AF   K R     +   L +  
Sbjct: 8   RYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQGC 67

Query: 75  AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW------- 127
                +     N    ++  A   G+   +V                  Q+         
Sbjct: 68  DTLVSIGGIQSNQTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVR 127

Query: 128 -------------SEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQV 174
                         E  + S  +   K          HP      +     +  +  E  
Sbjct: 128 LVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDHPLGGLGFVGFAEEVRAQEAELG 187

Query: 175 PLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNT 234
              D ++V    G   +G+ +   +   A R++  +        + +         E   
Sbjct: 188 FKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIARQTAE--- 244

Query: 235 VADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEP-SGAIGLAAVL 293
              GL   +      +          + ++  +EA++LC     +  +P      +  ++
Sbjct: 245 -KVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMI 303

Query: 294 SDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSFR 328
                +N  + +  ++     GG   L      FR
Sbjct: 304 --EMVRNGEFPEGSRVLYAHLGGVPALNGYSFIFR 336

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]} Length = 341

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

 Score =  114 bits (284), Expect = 1e-29
 Identities = 46/331 (13%), Positives = 92/331 (27%), Gaps = 38/331 (11%)

Query: 20  KRISLYIHKTPVLSSETLNSMSGR--SLFFKCECFQKGGAF---KFRGASNAVLS-LDED 73
            +  L    +P+ +   L+   G   +++ K E    G AF   K R     V   ++ D
Sbjct: 7   AKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEGD 66

Query: 74  QAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS----- 128
                 +     N    ++  A   G    ++     P  + E  V      I       
Sbjct: 67  YTHLVSIGGRQSNQTRMVAALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMG 126

Query: 129 ------------------EATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEF 170
                                +   E    K          H Y     +     +  + 
Sbjct: 127 ADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGCSEHKYGGLGFVGFADEVINQE 186

Query: 171 LEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLL 230
           +E     D I+V    G   +G+            ++A +    ++  + +         
Sbjct: 187 VELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRI----- 241

Query: 231 ETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEP-SGAIGL 289
             N  A  +        + +          V ++  IEA++ C E   V  +P      +
Sbjct: 242 -ANNTAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSM 300

Query: 290 AAVLSDGFRKNPAWQDSKKIGIVLSGGNVDL 320
             +++    K   ++    +  V  GG   L
Sbjct: 301 QGLIA--LIKEDYFKPGANVLYVHLGGAPAL 329

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]} Length = 292

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

 Score =  108 bits (271), Expect = 3e-28
 Identities = 52/311 (16%), Positives = 112/311 (36%), Gaps = 37/311 (11%)

Query: 13  SSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDE 72
           S++++        I  TP++  + +   +G  ++ K E     G+ K R A + ++  ++
Sbjct: 1   STLEQT-------IGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEK 53

Query: 73  DQAIKG---VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQ---VI 126
              IK    ++  +SGN   AL++ A L+G    +++P N  + +   +  YG +   V 
Sbjct: 54  RGEIKPGDVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVT 113

Query: 127 WSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPIS 185
             +    +R+          G +L    N     +   T   E  +Q    +   +  + 
Sbjct: 114 KEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMG 173

Query: 186 GGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD 245
             G I+GV+   +     + I+  +P                   E +++    R     
Sbjct: 174 TTGTITGVSRFMREQSKPVTIVGLQPE------------------EGSSIPGIRRWPTEY 215

Query: 246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQD 305
           L       LVD+V+ +  ++    M+       +    S    +A  L    + NP    
Sbjct: 216 LPGIFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRVA-KANP---- 270

Query: 306 SKKIGIVLSGG 316
              +  ++   
Sbjct: 271 DAVVVAIICDR 281

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 477

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  104 bits (260), Expect = 1e-25
 Identities = 52/328 (15%), Positives = 105/328 (32%), Gaps = 22/328 (6%)

Query: 7   KYAANFSSIKEAQKRISLYIHKTPVLSSETLNS--MSGRSLFFKCECFQKGGAFKFRGAS 64
                     +    +S +   + +  +E      +    L+ K       G+FK  G +
Sbjct: 100 SKKEWVLPEIDDDDIVSAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMT 159

Query: 65  NAVLSLDEDQAIK----GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR 120
             V  ++  + +K    GV   S+G+ +AALS      GIP+ + +P N           
Sbjct: 160 VLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPI 219

Query: 121 YGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVPLLDTI 180
             G  + S  T         + +     + +    +   + GQ T ++E L+Q       
Sbjct: 220 ANGAFVLSIDTDFDGCMKLIREITAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPD 279

Query: 181 IVPISGGGLISGVALA--------AKSIKPAIRILAAEPIGANDAAQSKAAGRII----- 227
            V + GG L +  A             +    R++ A+   AN       +G        
Sbjct: 280 WVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMT 339

Query: 228 TLLETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAI 287
                 +          D     ++     V    ++E+++AM        + + P   +
Sbjct: 340 ASTTFASAIQIGDPVSIDRAVYALKKCNGIVEEATEEELMDAMAQADS-TGMFICPHTGV 398

Query: 288 GLAAVLSDGFRKNPAWQDSKKIGIVLSG 315
            L A+     R       + +  +V + 
Sbjct: 399 ALTALFK--LRNQGVIAPTDRTVVVSTA 424

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 386

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score =  103 bits (256), Expect = 2e-25
 Identities = 55/361 (15%), Positives = 118/361 (32%), Gaps = 47/361 (13%)

Query: 2   EANGEKYAANFSSIKEAQKRISLYI-HKTPVLSSETL-NSMSGRSLFFKCECFQKGGAFK 59
           E   +++  +    ++    +  +    TP+  ++ L   + G  ++ K E    GGA K
Sbjct: 23  EKAYKRFKDDEEFNRQLNYYLKTWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHK 82

Query: 60  FRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVV 119
              A    L        + +    +G H  A ++A  L G+   I +     + +  NV 
Sbjct: 83  TNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMKVDIYMGAEDVERQKMNVF 142

Query: 120 R---YGGQVIWSEATMHSRESVASKVLEETGA----------------VLVHPYNDGRII 160
           R    G  VI   +   + +   ++ L +  A                       D + +
Sbjct: 143 RMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSV 202

Query: 161 SGQGTISLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIG------A 214
            G+   +     +  L D I+  + GG    G+          ++++  E  G       
Sbjct: 203 IGREAKAQILEAEGQLPDVIVACVGGGSNAMGIF-YPFVNDKKVKLVGVEAGGKGLESGK 261

Query: 215 NDAAQSKAAGRIITLLETNTVAD--------------GLRAFLGDLTWPIVRDLVDDVIT 260
           + A+ +     +   + +  + D                   +G     + +    + +T
Sbjct: 262 HSASLNAGQVGVFHGMLSYFLQDEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVT 321

Query: 261 VEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVD 319
           V D+E ++A         +      A  +A  +      +      + I + LSG G+ D
Sbjct: 322 VTDEEALKAFHELSRTEGIIPALESAHAVAYAMKLAKEMSR----DEIIIVNLSGRGDKD 377

Query: 320 L 320
           L
Sbjct: 378 L 378

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]} Length = 310

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

 Score =  100 bits (249), Expect = 5e-25
 Identities = 51/284 (17%), Positives = 101/284 (35%), Gaps = 17/284 (5%)

Query: 20  KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIK-- 77
              S  I  TP++  +        ++  K E      + K R  +N V   ++D  +   
Sbjct: 4   ADNSYSIGNTPLVRLKHFGH--NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKG 61

Query: 78  -GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRE 136
             +V  +SGN   AL+  A  RG    + +P+     +   +   G  ++ +E     + 
Sbjct: 62  KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKG 121

Query: 137 SVASKV-----LEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTIIVPISGGGLI 190
           ++A              +L    N       + T   E  +     +D ++  +  GG I
Sbjct: 122 AIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGTGGSI 181

Query: 191 SGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWP 249
           +G++ A K      I  +A EP+ +   +Q+ A   +           G+ A  G +   
Sbjct: 182 TGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKP---GPHKIQGIGA--GFIPKN 236

Query: 250 IVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVL 293
           +   ++D V TV+    +   +       +    S    +AA  
Sbjct: 237 LDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAAD 280

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 382

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 99.5 bits (247), Expect = 3e-24
 Identities = 52/274 (18%), Positives = 91/274 (33%), Gaps = 29/274 (10%)

Query: 29  TPVLSSETLNSMSGRSLFFKCECFQKGGA-FKFRGASNAVLSLDEDQAIKG-VVTHSSGN 86
           TP++ S  L   +G  ++ K E +       K R A   +  L         V   +S N
Sbjct: 96  TPLVRSR-LQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSN 154

Query: 87  HAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET 146
              ALS  A+L G  A + +P  A +         G QVI       +   +   + +  
Sbjct: 155 FGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSK 214

Query: 147 ---GAVLVHPYNDGRIISGQGTISLEFLEQVPLLDT----IIVPISGGGLISGVALAAKS 199
                 +   YND    +     + E   Q          +   +   G +S  A   +S
Sbjct: 215 NEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTSGHMSAAAFYLQS 274

Query: 200 IKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVDDVI 259
           + P+IR +  +P                          G+R     + W  + D+   + 
Sbjct: 275 VDPSIRAVLVQPAQ-------------------GDSIPGIRRVETGMLWINMLDISYTLA 315

Query: 260 TVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVL 293
            V  +E +EA+        + + PSG   + A+ 
Sbjct: 316 EVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALA 349

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]} Length = 390

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

 Score = 95.3 bits (236), Expect = 1e-22
 Identities = 65/362 (17%), Positives = 121/362 (33%), Gaps = 49/362 (13%)

Query: 2   EANGEKYAANFSSIKEAQKRISLYIHK-TPVLSSETLNSMSGRSLFFKCECFQKGGAFKF 60
           E        +     +    +  Y  + T +   + + + +  +L+ K E    GGA K 
Sbjct: 28  EEAFVSAQKDPEFQAQFADLLKNYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKT 87

Query: 61  RGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVR 120
                  L        + +    +G H  A +LA+ L G+   I +     + +  NV R
Sbjct: 88  NQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKCRIYMGAKDVERQSPNVFR 147

Query: 121 ---YGGQVI-----WSEATMHSRESVASKV------LEETGAVLVHPYNDGRIISGQGTI 166
               G +VI      +       E++              G           +   Q  I
Sbjct: 148 MRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMI 207

Query: 167 SLEFLEQV-----PLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSK 221
             E   Q+      L D +I  + GGG  +    A      ++ ++  EP G        
Sbjct: 208 GEETKAQILDKEGRLPDAVIACV-GGGSNAIGMFADFINDTSVGLIGVEPGGHGIETGEH 266

Query: 222 AAGRII-------------------TLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITV 261
            A                        + E+ +++ GL    +G     +      D +++
Sbjct: 267 GAPLKHGRVGIYFGMKAPMMQTADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSI 326

Query: 262 EDKEIIEAMKLC--YEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNV 318
            D E +EA K    +E +  A+E S A+  A  +    R+ P  +  + + + LSG G+ 
Sbjct: 327 TDDEALEAFKTLCRHEGIIPALESSHALAHALKMM---REQP--EKEQLLVVNLSGRGDK 381

Query: 319 DL 320
           D+
Sbjct: 382 DI 383

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d1v71a1	318	Hypothetical protein C320.14 (SPCC320.14, SPCC330.	100.0
d1tdja1	331	Threonine deaminase {Escherichia coli [TaxId: 562]	100.0
d1ve5a1	310	Threonine deaminase {Thermus thermophilus [TaxId:	100.0
d1p5ja_	319	L-serine dehydratase {Human (Homo sapiens) [TaxId:	100.0
d2bhsa1	292	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1z7wa1	320	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1o58a_	293	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1ve1a1	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1jbqa_	355	Cystathionine beta-synthase {Human (Homo sapiens)	100.0
d1y7la1	310	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1wkva1	382	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1v7ca_	351	Threonine synthase {Thermus thermophilus [TaxId: 2	100.0
d1fcja_	302	O-acetylserine sulfhydrylase (Cysteine synthase) {	100.0
d1e5xa_	477	Threonine synthase {Mouse-ear cress (Arabidopsis t	100.0
d1v8za1	386	Tryptophan synthase, beta-subunit {Archaeon Pyroco	100.0
d1qopb_	390	Tryptophan synthase, beta-subunit {Salmonella typh	100.0
d1j0aa_	325	1-aminocyclopropane-1-carboxylate deaminase {Archa	100.0
d1tyza_	338	1-aminocyclopropane-1-carboxylate deaminase {Pseud	100.0
d1f2da_	341	1-aminocyclopropane-1-carboxylate deaminase {Yeast	100.0
d1vb3a1	428	Threonine synthase {Escherichia coli [TaxId: 562]}	100.0
d1kl7a_	511	Threonine synthase {Baker's yeast (Saccharomyces c	99.92
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	92.65
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	91.36
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	91.22
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	91.1
d1vp8a_	190	Hypothetical protein AF0103 {Archaeoglobus fulgidu	91.03
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	90.54
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	90.32
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	90.07
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	88.85
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	88.3
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	88.14
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	87.9
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	87.75
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	87.45
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	87.19
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	86.68
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	86.47
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	86.04
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	85.78
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	85.76
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	85.63
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.62
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	84.73
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	84.3
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	84.3
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	84.15
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	84.14
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	82.0
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	81.42
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	81.23
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	80.31

>d1v71a1 c.79.1.1 (A:6-323) Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c) {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Hypothetical protein C320.14 (SPCC320.14, SPCC330.15c)
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=5.3e-69  Score=492.45  Aligned_cols=316  Identities=41%  Similarity=0.691  Sum_probs=298.4

Q ss_pred             CCCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHH
Q 020236            9 AANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHA   88 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g   88 (329)
                      ..|++|+.++++++.+++++|||+++++|++.+|.+||+|+|++|||||||||++.+++.++.+.+....|+++|+||||
T Consensus         2 lpt~~di~~a~~ri~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~~~~~~~~~~~~~vv~~ssGN~g   81 (318)
T d1v71a1           2 LPTYDDVASASERIKKFANKTPVLTSSTVNKEFVAEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTFSSGNHA   81 (318)
T ss_dssp             CCCHHHHHHHHHHHTTTSCCCCEECCHHHHHHHTSEEEEEEGGGSGGGBTHHHHHHHHHTTCCHHHHHHCEEECCSSHHH
T ss_pred             CCCHHHHHHHHHHHhccCCCCCEEEchhhhHHHCCEEEEEeCCCCCCCCHHHHHHHHHHHHhhhccccceeeeeccchhh
Confidence            35789999999999999999999999999999999999999999999999999999999998766666789999999999


Q ss_pred             HHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchH
Q 020236           89 AALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISL  168 (329)
Q Consensus        89 ~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~  168 (329)
                      +++|++|+.+|++|++|+|++.++.|+++|+.+||+|+.++++++++.+.+++++++++++|++||+||..++|+.++++
T Consensus        82 ~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~a~~~a~~~g~~~~~~~~~~~~~~g~~t~~~  161 (318)
T d1v71a1          82 QAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRYKDDREKMAKEISEREGLTIIPPYDHPHVLAGQGTAAK  161 (318)
T ss_dssp             HHHHHHHHHTTCCEEEEEETTCCHHHHHHHHHTTCEEEEECTTTTCHHHHHHHHHHHHTCBCCCSSSSHHHHHHHTHHHH
T ss_pred             HHHHHhhcccccceeecccccccHHHHHHHHHcCCcEEeccCCchHHHHHHHHHHHhcCCEecCCccccccccccchHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCccc
Q 020236          169 EFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLT  247 (329)
Q Consensus       169 Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~  247 (329)
                      ||++|++++|+||+|+|+||+++|++.+++...|.+++++|++.+++++..++..+.....+...++++++..+ ++...
T Consensus       162 Ei~~q~~~~d~vvv~~G~GG~~~Gi~~~~~~~~~~~~ii~v~~~~~~~~~~s~~~~~~~~~~~~~~~a~~~~~~~~~~~~  241 (318)
T d1v71a1         162 ELFEEVGPLDALFVCLGGGGLLSGSALAARHFAPNCEVYGVEPEAGNDGQQSFRKGSIVHIDTPKTIADGAQTQHLGNYT  241 (318)
T ss_dssp             HHHHHHCCCSEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCHHHHHHHHTSCCCCCCCCCSCTTSCCSSCCHHH
T ss_pred             HHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCCceeecccccchhhhhhccccccccccCCCCccccccccCCcchHH
Confidence            99999999999999999999999999999999999999999999999999999999887777788888888875 77788


Q ss_pred             HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHHhh
Q 020236          248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWDSF  327 (329)
Q Consensus       248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~~~  327 (329)
                      +++++++++.++.|+|+|++++++.++++||+++||+||+++||++++  .++   .++++||+++||||.|++.|.+++
T Consensus       242 ~~~~~~~~~~~~~v~d~e~~~a~~~la~~egi~~eps~a~~lAa~~~~--~~~---~~~~~Vv~il~GGN~d~~~~~~~~  316 (318)
T d1v71a1         242 FSIIKEKVDDILTVSDEELIDCLKFYAARMKIVVEPTGCLSFAAARAM--KEK---LKNKRIGIIISGGNVDIERYAHFL  316 (318)
T ss_dssp             HHHHHHHCCEEEEECHHHHHHHHHHHHHHTCCCCCGGGGHHHHHHHHT--GGG---GTTCEEEEEECBCCCCHHHHHHHH
T ss_pred             HHHHHhccCceeeECHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHh--HHH---cCCCcEEEEeCCCCCCHHHHHHHH
Confidence            899999999999999999999999999999999999999999999987  443   267899999999999999999999


Q ss_pred             hC
Q 020236          328 RK  329 (329)
Q Consensus       328 ~~  329 (329)
                      ++
T Consensus       317 ~~  318 (318)
T d1v71a1         317 SQ  318 (318)
T ss_dssp             TC
T ss_pred             cC
Confidence            85

>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.5e-67  Score=481.02  Aligned_cols=318  Identities=31%  Similarity=0.466  Sum_probs=295.2

Q ss_pred             CCCHHHHHH-HHH-HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCch
Q 020236            9 AANFSSIKE-AQK-RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGN   86 (329)
Q Consensus         9 ~~~~~~~~~-~~~-~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN   86 (329)
                      ..++.|..+ +++ ++.+.+++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.++++.++|+++|+||
T Consensus         6 ~p~~~d~~~~i~~~~v~~~~~~TPL~~~~~L~~~lg~~i~~K~E~~nptGS~KdRga~~~i~~~~~~~~~~~vv~assGN   85 (331)
T d1tdja1           6 APEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGN   85 (331)
T ss_dssp             CCCHHHHHHHHHHCCGGGTCCCCCEEECHHHHHHTTSEEEEECGGGSTTSSSTHHHHHHHHHTTTTSSCSSSCEEEECSS
T ss_pred             CCChHHHHHHHHhcccceeccCCceeEHHHhhHHHCCEEEEEECCCCCCCChHHHHHHHHHHHHHHhCCCCeeeecccch
Confidence            456777544 332 677889999999999999999999999999999999999999999999987777778899999999


Q ss_pred             HHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcc
Q 020236           87 HAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTI  166 (329)
Q Consensus        87 ~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~  166 (329)
                      ||.|+|++|+.+|++|++++|+..+..|.++|+.+||+|+.++.++++..+.+.++.++.+++|+++++||++++||.++
T Consensus        86 ~g~a~A~~a~~~g~~~~i~~p~~~~~~k~~~l~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~  165 (331)
T d1tdja1          86 HAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQGFTWVPPFDHPMVIAGQGTL  165 (331)
T ss_dssp             SHHHHHHHHHHTTCCEEEECCSSCCHHHHHHHHHHSCEEECCCSSHHHHHHHHHHHHHHHCCEECCSSCCHHHHHHHHHH
T ss_pred             hHHHHHHhhccccccceeeccccchhHHHHHHHhcCCEEEEcCcccccchhhhhhhhhcCCCccccccCChHHhhhhhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHHhhCCCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCc
Q 020236          167 SLEFLEQVPLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGD  245 (329)
Q Consensus       167 ~~Ei~~ql~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~  245 (329)
                      +.||++|.++||+||+|+|+||+++|++.+|++.+|+++||+|||.+++++++++..+++...+...+++.|+..+ +++
T Consensus       166 ~~Ei~~q~~~~D~vv~~~G~GG~~aG~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~  245 (331)
T d1tdja1         166 ALELLQQDAHLDRVFVPVGGGGLAAGVAVLIKQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGD  245 (331)
T ss_dssp             HHHHHHHCTTCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTTCHHHHHHHHTSCCCCSCCCSSSSTTCCSSCCC
T ss_pred             HHHHHHhcCCCCEEEEeCChhHHHHHHHHHHHHhCCCcEEEEecccccchHHHHHhCCCeeecCCCCceeccccCCCCCH
Confidence            9999999999999999999999999999999999999999999999999999999999988887788999999876 788


Q ss_pred             ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHHH
Q 020236          246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLWD  325 (329)
Q Consensus       246 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~~  325 (329)
                      ..|++..+++|+++.|+|+|++++++.|++++||++|||||++++|++++  .+++.+ ++++||+|+||||+|++.++.
T Consensus       246 ~~~~~~~~~~d~~~~V~d~e~~~a~~~la~~eGi~~eps~~~alAal~~~--~~~~~~-~g~~Vv~vltGgnid~~~~~~  322 (331)
T d1tdja1         246 ETFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKY--IALHNI-RGERLAHILSGANVNFHGLRY  322 (331)
T ss_dssp             HHHHHHTTSCCEEEEECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHHH--HHHHTC-CSCEEEEECCCCCCCTTHHHH
T ss_pred             HHHHHhhccCCEEEEecHHHHHHHHHHHHHHcCcEEeHHHHHHHHHHHHH--HhhccC-CcCeEEEEeCCCCCCcchhHH
Confidence            88999999999999999999999999999999999999999999999886  444443 689999999999999999998


Q ss_pred             hhhC
Q 020236          326 SFRK  329 (329)
Q Consensus       326 ~~~~  329 (329)
                      +.+|
T Consensus       323 ~~e~  326 (331)
T d1tdja1         323 VSER  326 (331)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8765

>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine deaminase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=2.3e-65  Score=466.68  Aligned_cols=303  Identities=40%  Similarity=0.676  Sum_probs=279.0

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHH
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAA   89 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~   89 (329)
                      .++++|.+++++|.++|++|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.   ...+|+++|+||||.
T Consensus         1 p~~~~i~~a~~~i~~~ig~TPL~~~~~L~~~~g~~i~~K~E~~nPtGSfKdRgA~~~~~~~~---~~~~vv~aSsGN~g~   77 (310)
T d1ve5a1           1 PSLQDLYAAFRRIAPYTHRTPLLTSRLLDGLLGKRLLLKAEHLQKTGSFKARGALSKALALE---NPKGLLAVSSGNHAQ   77 (310)
T ss_dssp             CCHHHHHHHHHHHGGGSCCCCEEECHHHHHHTTSEEEEEEGGGSGGGBTHHHHHHHHHHHSS---SCCCEEEECSSHHHH
T ss_pred             CCHHHHHHHHHHHhCcCCCCceeEhhhhhHHhCCEEEEEeCCCCCcCCcHHHHHHHHHHHhc---ccCCccccCchhhHH
Confidence            47899999999999999999999999999999999999999999999999999988887542   346799999999999


Q ss_pred             HHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHH
Q 020236           90 ALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLE  169 (329)
Q Consensus        90 a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~E  169 (329)
                      |+|++|+.+|++|+||||++.++.|+++|+.+|++++.+++++++..+.+++.+++.+++|++||+||.++.|+.+++.|
T Consensus        78 a~A~~aa~~G~~~~i~vp~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~a~~~~~~~~~~~~~~~~np~~~~g~~t~~~E  157 (310)
T d1ve5a1          78 GVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGVTAKNREEVARALQEETGYALIHPFDDPLVIAGQGTAGLE  157 (310)
T ss_dssp             HHHHHHHHHTCCEEEECCCC--CCHHHHHHHTTCEEECTTCCTTTHHHHHHHHHHHHCCEECCSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEeecccchHHHHHHHhhhccccceeeccchhHHHHHHHHHHhcCCcCCCCCCChhhHhhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecC-CCCccccccccC-C
Q 020236          170 FLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLL-ETNTVADGLRAF-L  243 (329)
Q Consensus       170 i~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~-~~~t~~~gl~~~-~  243 (329)
                      |++|++    .||++++|+|+||+++|++.++++.++.+++++||+.++++++.++..++....+ ...++..++... +
T Consensus       158 i~~q~~~~~~~~d~vv~~~g~Gg~~~g~~~~~~~~~~~~~ii~ve~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  237 (310)
T d1ve5a1         158 LLAQAGRMGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLVLGVEPEAADDAKRSLEAGRILRLEAPPRTRADGVRTLSL  237 (310)
T ss_dssp             HHHHHHHHTCCCSEEEEECSSSHHHHHHHHHHHHHCTTSEEEEEEEGGGCHHHHHHHHTSCCCCSSCCCCSCGGGCCSSC
T ss_pred             HHHHHHhcCCceeeeeeccCcchhhhhhhhhhhccCCccceEEEEeeccchhhhhhccccccccCccccccccccCCCCc
Confidence            999975    5999999999999999999999999999999999999999999999999877665 346777888765 7


Q ss_pred             CcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChH
Q 020236          244 GDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLG  321 (329)
Q Consensus       244 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~  321 (329)
                      +...|+++++++|+++.|+|+|+++++++|+++||+++|||||++++|+++.  .++    .+++||+++||||+|++
T Consensus       238 g~~~~~~~~~~~d~~v~V~d~e~~~a~~~La~~eGi~vepssaa~lAa~~~~--~~~----~~~~Vvvvl~GgN~d~~  309 (310)
T d1ve5a1         238 GERTFPILRERVDGILTVSEEALLEAERLLFTRTKQVVEPTGALPLAAVLEH--GAR----LPQTLALLLSGGNRDFS  309 (310)
T ss_dssp             CTTTHHHHHHHCCEEEEECHHHHHHHHHHHHHHTCBCCCGGGGHHHHHHHHH--GGG----SCSEEEEEECBCCCCCC
T ss_pred             chhhHHHhcccCCeEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHh--hHh----cCCCEEEEeCCCCccCC
Confidence            8889999999999999999999999999999999999999999999999986  332    45899999999999974

>d1p5ja_ c.79.1.1 (A:) L-serine dehydratase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: L-serine dehydratase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.1e-63  Score=455.44  Aligned_cols=305  Identities=25%  Similarity=0.366  Sum_probs=277.4

Q ss_pred             cccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEE
Q 020236           24 LYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAY  103 (329)
Q Consensus        24 ~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~  103 (329)
                      +++-+|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+ .+.++||++||||||+|+|++|+.+|++|+
T Consensus         3 p~~~~TPl~~~~~L~~~~g~~i~~K~E~~nptGSfK~R~a~~~~~~a~~-~g~~~vv~aSsGN~g~a~A~~a~~~G~~~~   81 (319)
T d1p5ja_           3 PLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAK-QGCAHFVCSSAGNAGMAAAYAARQLGVPAT   81 (319)
T ss_dssp             CSSCCCCEEEEHHHHHHHTSCEEEECGGGSGGGBTTHHHHHHHHHHHHH-TTCCEEEECCSSHHHHHHHHHHHHHTCCEE
T ss_pred             CCceeCCcEEhHHhHHHHCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHH-cCCCEEEEeCCCcHHHHHHHHhhhccccce
Confidence            4556899999999999999999999999999999999999999999854 467899999999999999999999999999


Q ss_pred             EEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHc-CCEeeCCCCCcccccccCcchHHHHhhCC-CCCEEE
Q 020236          104 IVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEET-GAVLVHPYNDGRIISGQGTISLEFLEQVP-LLDTII  181 (329)
Q Consensus       104 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~d~vv  181 (329)
                      ||||++.++.|+++++.+|++|+.++++++++.+.++++++++ +++|+++++|+.+++|+.+++.||++|+. .||++|
T Consensus        82 i~~p~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~Ei~~q~~~~~d~vv  161 (319)
T d1p5ja_          82 IVVPGTTPALTIERLKNEGATCKVVGELLDEAFELAKALAKNNPGWVYIPPFDDPLIWEGHASIVKELKETLWEKPGAIA  161 (319)
T ss_dssp             EEECTTCCHHHHHHHHHTTCEEEECCSCHHHHHHHHHHHHHHSTTEEECCSSCCHHHHHHHTHHHHHHHHHCSSCCSEEE
T ss_pred             eccccccccccccccccceeccccccccchhHHHHHHHHhhccCcccccccccccccccccchhhhhhhccccCCCceee
Confidence            9999999999999999999999999999999999999998775 67789999999999999999999999997 699999


Q ss_pred             EeCCCChHHHHHHHHHHHhC-CCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC-CCcccHHHHhhcCCcEE
Q 020236          182 VPISGGGLISGVALAAKSIK-PAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF-LGDLTWPIVRDLVDDVI  259 (329)
Q Consensus       182 ~~~GtGg~~~Gi~~~~k~~~-~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~  259 (329)
                      +|+|+||+++|++.+++... |.+++++|||.+++++++++..|++.......++++|++.+ .++..|++++++.|..+
T Consensus       162 ~~vg~Gg~~~g~~~~~~~~~~~~~~~i~ve~~~~~~~~~s~~~g~~~~~~~~~t~a~gl~~~~~~~~~~~~~~~~~~~~~  241 (319)
T d1p5ja_         162 LSVGGGGLLCGVVQGLQECGWGDVPVIAMETFGAHSFHAATTAGKLVSLPKITSVAKALGVKTVGSQALKLFQEHPIFSE  241 (319)
T ss_dssp             EECSSSHHHHHHHHHHHHTTCTTCCEEEEEETTSCHHHHHHHHTSCCCCSCCCCSCGGGCCSSCCHHHHHHHHHSCEEEE
T ss_pred             ecccCCcchhhhHHHHHHhccCCeeeeecccccccccchhhhccccccccccccccccccccccccccchhhhhccceee
Confidence            99999999999999999875 78999999999999999999999988888889999999875 67788999999999999


Q ss_pred             EeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhcccc----ccCCCCCCCCeEEEEeCC-CCCChHHHHHhhhC
Q 020236          260 TVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGF----RKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFRK  329 (329)
Q Consensus       260 ~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~----~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~~  329 (329)
                      .|+|+|+++++++++++|||++||+||+++||+++...    .+.....+++++|+++|| ||+|+|+++.+.++
T Consensus       242 ~V~d~e~~~a~~~l~~~egi~~epssa~~~aal~~~~~~~~~~~~~~~~~~~~vVvv~~~G~n~d~~~l~~~~e~  316 (319)
T d1p5ja_         242 VISDQEAVAAIEKFVDDEKILVEPACGAALAAVYSHVIQKLQLEGNLRTPLPSLVVIVCGGSNISLAQLRALKEQ  316 (319)
T ss_dssp             EECHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTTHHHHHHHTTSSCSSCSCEEEECCBCSSCCHHHHHHHHHH
T ss_pred             ecCHHHHHHHHHHHHHHcCEEEeHHHHHHHHHHHHHHHHHHHHhccccCCCCCEEEEEcCCCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999986421    122223456778888875 69999999988764

>d2bhsa1 c.79.1.1 (A:2-293) O-acetylserine sulfhydrylase (Cysteine synthase) {Escherichia coli, isoform B (CysM) [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Escherichia coli, isoform B (CysM) [TaxId: 562]

Probab=100.00  E-value=1.7e-59  Score=424.16  Aligned_cols=278  Identities=17%  Similarity=0.233  Sum_probs=240.3

Q ss_pred             hccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhc---cCCeEEEECCchHHHHHHHHHHHc
Q 020236           22 ISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ---AIKGVVTHSSGNHAAALSLAAKLR   98 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~---~~~~vv~~ssGN~g~a~A~~a~~~   98 (329)
                      |.+.||+|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++   +..+|+++|+||||.|+|++|+.+
T Consensus         3 i~~~IG~TPL~~~~~l~~~~g~~iy~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~A~~a~~~   82 (292)
T d2bhsa1           3 LEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPGDVLIEATSGNTGIALAMIAALK   82 (292)
T ss_dssp             GGGGSSCCCEEECSSSSCCSSCEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTSEEEEECCSHHHHHHHHHHHHH
T ss_pred             hhcccCCCceEECCccChhhCCEEEEEeCCCCCCCCcHHHHHHHHHHHHHHhCCcCCCceeeeecccchhHHHHHHHHhc
Confidence            56789999999999999999999999999999999999999999999886664   257899999999999999999999


Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCH--HHHHHHHHHHHHHcCCEeeCCCCCcc-cccccCcchHHHHhhCC
Q 020236           99 GIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATM--HSRESVASKVLEETGAVLVHPYNDGR-IISGQGTISLEFLEQVP  175 (329)
Q Consensus        99 G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~n~~-~~~g~~t~~~Ei~~ql~  175 (329)
                      |++|+||+|+.+++.|+++|+.+||+|+.++.+.  .++.....+..+++++++.+||+|+. ...|+.++++||++|++
T Consensus        83 G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Ei~~q~~  162 (292)
T d2bhsa1          83 GYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEGARDLALEMANRGEGKLLDQFNNPDNPYAHYTTTGPEIWQQTG  162 (292)
T ss_dssp             TCEEEEEEESCCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHTSSEECCTTTCTHHHHHHHHTHHHHHHHHTT
T ss_pred             CcceEeeeccCchhhhhHHHHHhCCCcceeecccchHHHHHHHhhccccccccccCCCchhcchhhHHHHHHHHhHHhcC
Confidence            9999999999999999999999999999998764  34455566666778899999998887 56789999999999998


Q ss_pred             -CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhc
Q 020236          176 -LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDL  254 (329)
Q Consensus       176 -~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~  254 (329)
                       .||+||+|+|+||+++|++.++|...+++++++|||++++++..    ......    ....          +......
T Consensus       163 ~~~d~vv~~~G~Gg~~~G~~~~~k~~~~~~~i~~Vep~~~~~~~~----~~~~~~----~~~~----------~~~~~~~  224 (292)
T d2bhsa1         163 GRITHFVSSMGTTGTITGVSRFMREQSKPVTIVGLQPEEGSSIPG----IRRWPT----EYLP----------GIFNASL  224 (292)
T ss_dssp             TCCCEEEEECSSSHHHHHHHHHHHTSSSCCEEEEEEECTTCCCTT----CCCCCT----TTCC----------TTCCGGG
T ss_pred             CCCCcccccCCCccchhhhhhhhhhccCcceEEEecccccccccc----cccccc----cccc----------ccccccc
Confidence             69999999999999999999999999999999999999876531    111110    0101          1112467


Q ss_pred             CCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          255 VDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       255 ~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      .++++.|+|+|+++++++|+++||+++|||||++++|++++  .+.+   ++++||+|+|| |.+|+|+
T Consensus       225 ~~~~~~v~d~ea~~a~~~L~~~eGi~vepSsgaalaa~~~~--~~~~---~~~~VV~il~~~G~kYlst  288 (292)
T d2bhsa1         225 VDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAVAGALRV--AKAN---PDAVVVAIICDRGDRYLST  288 (292)
T ss_dssp             CSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHTC---TTCEEEEEECBBSGGGGGG
T ss_pred             cceEEEcCHHHHHHHHHHHHHHcCeEEeHHHHHHHHHHHHH--HHHC---cCCeEEEEECCCCcccccc
Confidence            89999999999999999999999999999999999999987  5443   68999999998 7899875

>d1z7wa1 c.79.1.1 (A:3-322) O-acetylserine sulfhydrylase (Cysteine synthase) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.4e-59  Score=427.89  Aligned_cols=290  Identities=16%  Similarity=0.204  Sum_probs=244.6

Q ss_pred             HHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc----CCeEEEECCchHHHHHHHHH
Q 020236           20 KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA----IKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~----~~~vv~~ssGN~g~a~A~~a   95 (329)
                      ++|.++||+|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++.    ..+||++||||||.|+|++|
T Consensus         5 ~~i~~~iG~TPLv~~~~l~~~~g~~i~~K~E~~nptGSfKdRgA~~~i~~a~~~g~~~~~~~~vv~aSsGN~g~a~A~~a   84 (320)
T d1z7wa1           5 KDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTA   84 (320)
T ss_dssp             SSGGGGSSCCCEEECCGGGTTCSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTSCCTTTCEEEEECSSHHHHHHHHHH
T ss_pred             hhhhhhcCCCCeEECCCcccccCCEEEEEeCCCCCccCcHHHHHHHHHHHHHHcCCCCCCCceEEeeCCchHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999998866642    46799999999999999999


Q ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHH---HHHHHHHHHHHHcCCEeeCCCCCcc-cccccCcchHHHH
Q 020236           96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMH---SRESVASKVLEETGAVLVHPYNDGR-IISGQGTISLEFL  171 (329)
Q Consensus        96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~n~~-~~~g~~t~~~Ei~  171 (329)
                      +.+|++|++|+|+.+++.|+++++.+||+|+.++...+   ...+......++++++++++|+|+. ...|+.|+++||+
T Consensus        85 ~~~g~~~~iv~p~~~~~~k~~~i~~~Ga~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~g~~t~~~EI~  164 (320)
T d1z7wa1          85 AAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIW  164 (320)
T ss_dssp             HHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTEEECCTTTCTHHHHHHHHTHHHHHH
T ss_pred             HhhccceEEeehhhhhhhhhhhhhccCcceEEeeccccccccchhHHHHHHhCCCceecccccccchHHHhhhhHHHHHH
Confidence            99999999999999999999999999999999976432   2233333344557899999999886 6789999999999


Q ss_pred             hhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHH
Q 020236          172 EQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPI  250 (329)
Q Consensus       172 ~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~  250 (329)
                      +|+. +||+||+|+|+||+++|++.+|+..+|.+++++|||.+++.+    ..+.+.     ....+|++.+.  ..+.+
T Consensus       165 ~q~~~~~D~vv~~vGgGg~~~Gi~~~~k~~~~~~~~igve~~~s~~~----~~~~~~-----~~~~~gig~~~--~~~~~  233 (320)
T d1z7wa1         165 KGTGGKIDGFVSGIGTGGTITGAGKYLKEQNANVKLYGVEPVESAIL----SGGKPG-----PHKIQGIGAGF--IPSVL  233 (320)
T ss_dssp             HHTTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEEGGGCGG----GTCCCC-----CCSCTTSCCSS--CCTTC
T ss_pred             HhccCCCCEEEeCCCCCcccchhhhhhhhhhcceeeecccccCCccc----cCCCCC-----CceeeeccCCc--Ccchh
Confidence            9996 799999999999999999999999999999999999998754    233221     22234555431  11223


Q ss_pred             HhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHH
Q 020236          251 VRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVL  323 (329)
Q Consensus       251 ~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~  323 (329)
                      ..+.+|+++.|+|+|+++++++|+++||+++||+||++++|++++  +++. ..++++||+|+|| |.+|++++
T Consensus       234 ~~~~id~~~~V~d~e~~~a~~~l~~~eGi~ve~ssga~~aaa~k~--a~~~-~~~~~~VV~i~~d~G~kYlst~  304 (320)
T d1z7wa1         234 NVDLIDEVVQVSSDESIDMARQLALKEGLLVGISSGAAAAAAIKL--AQRP-ENAGKLFVAIFPSFGERYLSTV  304 (320)
T ss_dssp             CGGGCSEEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHH--HTSG-GGTTCEEEEEECBBGGGGTTSG
T ss_pred             hhhhcceeeccCHHHHHHHHHHHHHHCCEEEehHHHHHHHHHHHH--Hhhc-cCCCCEEEEEECCCchhhcccc
Confidence            467889999999999999999999999999999999999999986  4443 2478999999997 78998763

>d1o58a_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.5e-59  Score=422.94  Aligned_cols=285  Identities=23%  Similarity=0.320  Sum_probs=241.3

Q ss_pred             HHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc-CCeEEEECCchHHHHHHHHHHHc
Q 020236           20 KRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA-IKGVVTHSSGNHAAALSLAAKLR   98 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~-~~~vv~~ssGN~g~a~A~~a~~~   98 (329)
                      ++|.++||+|||+++++|    +.+||+|+|++|||||||||++.+++.++.+++. ..+|+++|+||||.|+|++|+.+
T Consensus         2 ~~i~~~ig~TPL~~~~~l----~~~i~~K~E~~nptGSfK~Rga~~~i~~a~~~g~~~~~vv~~SsGN~g~a~A~~a~~~   77 (293)
T d1o58a_           2 HMMERLIGSTPIVRLDSI----DSRIFLKLEKNNPGGSVKDRPALFMILDAEKRGLLKNGIVEPTSGNMGIAIAMIGAKR   77 (293)
T ss_dssp             CHHHHHSCCCCEEECTTT----CTTEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTCCTTCEEEECSSHHHHHHHHHHHHH
T ss_pred             chhhhhcCCCCcEECCCC----CCEEEEEECCCCCccChHHHHHHHHHHHHHHcCCCCcceEEecCcchhhHHHHhhhhc
Confidence            356788999999999875    4689999999999999999999999998866543 46799999999999999999999


Q ss_pred             CCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCH--HHHHHHHHHHHHHcCCEeeCCCCCcc-cccccCcchHHHHhhCC
Q 020236           99 GIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATM--HSRESVASKVLEETGAVLVHPYNDGR-IISGQGTISLEFLEQVP  175 (329)
Q Consensus        99 G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~n~~-~~~g~~t~~~Ei~~ql~  175 (329)
                      |++|++|+|+.+++.|+++++.+||+|+.++.+.  ....+.+.+++++.+++|++||+|+. ...|+.++++||++|++
T Consensus        78 g~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~Ei~~q~~  157 (293)
T d1o58a_          78 GHRVILTMPETMSVERRKVLKMLGAELVLTPGELGMKGAVEKALEISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMD  157 (293)
T ss_dssp             TCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHHCCBCCCTTTCHHHHHHHHHTHHHHHHHHTT
T ss_pred             cceeEeeccccccHHHeeccccCCcEEEEecCcchhhHHHHHHHHHHhccCCEEeeeccccceeeeccccHHHhhhhhcC
Confidence            9999999999999999999999999999998753  34555667788888999999999886 56779999999999998


Q ss_pred             -CCCEEEEeCCCChHHHHHHHHHHHhCC-CCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhh
Q 020236          176 -LLDTIIVPISGGGLISGVALAAKSIKP-AIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRD  253 (329)
Q Consensus       176 -~~d~vv~~~GtGg~~~Gi~~~~k~~~~-~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~  253 (329)
                       +||+||+|+|+||+++|++.+||+..+ .+|+++|||.+++++.    .+.+.     .+..++++.+.-+  +.+.+.
T Consensus       158 ~~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~~ii~vep~~~~~l~----~~~~~-----~~~i~~i~~~~~~--~~~~~~  226 (293)
T d1o58a_         158 YQIDAFVAGVGTGGTISGVGRVLKGFFGNGVKIVAVEPAKSPVLS----GGQPG-----KHAIQGIGAGFVP--KILDRS  226 (293)
T ss_dssp             TCCSEEEEECSSSHHHHHHHHHHHHHHGGGSEEEEEEETTSCTTT----TCCCC-----CCCCTTSCCSSCC--TTCCGG
T ss_pred             CCCCEEEEecCcchhHHHHHHHHHHHCCCCCeEEEEecCCCcccc----CCCcC-----CcccccCCCCccc--hhhhhh
Confidence             799999999999999999999998654 6999999999998753    33221     1222344432111  122356


Q ss_pred             cCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHH
Q 020236          254 LVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVL  323 (329)
Q Consensus       254 ~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~  323 (329)
                      .+|+.+.|+|+|++++++.|++++||++||+||++++|++++  +++  +.++++||+|+|| |.+|+|++
T Consensus       227 ~~d~~v~v~d~e~~~a~~~l~~~eGi~~epssaa~~aa~~~~--a~~--~~~~~~Vv~i~~d~g~kYls~~  293 (293)
T d1o58a_         227 VIDEVITVEDEEAYEMARYLAKKEGLLVGISSGANVAAALKV--AQK--LGPDARVVTVAPDHAERYLSIL  293 (293)
T ss_dssp             GCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHT--SCTTCCEEEEECBBGGGCTTTC
T ss_pred             hCcEEEEECHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHH--HHH--cCCcCEEEEEECCCCcccccCC
Confidence            789999999999999999999999999999999999999987  444  4578999999998 79999863

>d1ve1a1 c.79.1.1 (A:1-302) O-acetylserine sulfhydrylase (Cysteine synthase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3e-59  Score=424.50  Aligned_cols=287  Identities=20%  Similarity=0.242  Sum_probs=245.4

Q ss_pred             HhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhc-----cCCeEEEECCchHHHHHHHHH
Q 020236           21 RISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ-----AIKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        21 ~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~-----~~~~vv~~ssGN~g~a~A~~a   95 (329)
                      ||...||+|||+++++|++.+|.+||+|+|++|||||||||++.+++..+.+++     +.++|+++|+||||.|+|++|
T Consensus         2 ri~~~ig~TPLi~~~~l~~~~g~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~~~vv~~SsGN~g~a~A~~a   81 (302)
T d1ve1a1           2 RVEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSGQVIVEPTSGNTGIGLAMIA   81 (302)
T ss_dssp             CGGGGCCCCCEEECCSSSCTTSCEEEEEEGGGSTTSBTTHHHHHHHHHHHHHTTSCCTTSCCEEEESCCSHHHHHHHHHH
T ss_pred             cccCccCCCCeEECcccchhhCCEEEEEeCCCCcccCcHHHHHHHHHHHHHHhCCCCCCCCcEEEEecCCcchhhhhhhh
Confidence            577899999999999999999999999999999999999999999999886653     347899999999999999999


Q ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHH--HHHHHHHHHHHHcCCEeeCCCCCcc-cccccCcchHHHHh
Q 020236           96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMH--SRESVASKVLEETGAVLVHPYNDGR-IISGQGTISLEFLE  172 (329)
Q Consensus        96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~n~~-~~~g~~t~~~Ei~~  172 (329)
                      +.+|++|++|+|+..++.+++.++.+|++++.++...+  +....+.+..++.+++|++||+|+. ...|++|+++||++
T Consensus        82 ~~~g~~~~iv~p~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~EI~~  161 (302)
T d1ve1a1          82 ASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLAAREEALRLKEELGAFMPDQFKNPANVRAHYETTGPELYE  161 (302)
T ss_dssp             HHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHHHHHHTCBCCCTTTCHHHHHHHHHTHHHHHHH
T ss_pred             hccCcceeEeeecccchheeehhhhhhhcchhcccccchHHHHHHhhhhhhccCccccccCccchhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999987543  3444555566778999999999987 55678999999999


Q ss_pred             hCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHH
Q 020236          173 QVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIV  251 (329)
Q Consensus       173 ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~  251 (329)
                      |++ +||+||+|+|+||+++|++.+|+...|.+++|+|||.+++++.+.+..+         ...+|+..+  ...+...
T Consensus       162 q~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~iigve~~~~~~~~~~~~~~---------~~~~g~~~~--~~~~~~~  230 (302)
T d1ve1a1         162 ALEGRIDAFVYGSGTGGTITGVGRYLKERIPHVKVIAVEPARSNVLSGGKMGQ---------HGFQGMGPG--FIPENLD  230 (302)
T ss_dssp             HTTTCCSEEEEECSSSHHHHHHHHHHHTTCTTCEEEEEEEGGGCTTTTCCCCC---------CSCTTSCCS--SCCTTCC
T ss_pred             HcCCCCCeEEEeecCcHHHHHHHHHHHhcCCCCEEEEEEecccceeeeccccC---------cccCccCCC--cCCchhh
Confidence            998 6999999999999999999999999999999999999988654322111         122344432  2222334


Q ss_pred             hhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          252 RDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       252 ~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      .++.++.+.|+|+|+++++++|++++|++++|+||++++|++++  .++  +.++++||+|+|| |.+|+|+
T Consensus       231 ~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~~ssgaa~aaal~~--~~~--~~~~~~Vv~i~~g~G~kY~st  298 (302)
T d1ve1a1         231 LSLLDGVIQVWEEDAFPLARRLAREEGLFLGMSSGGIVWAALQV--ARE--LGPGKRVACISPDGGWKYLST  298 (302)
T ss_dssp             GGGCSEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HHH--HCTTCEEEEEECBBSGGGTTS
T ss_pred             hhcceeeeecCHHHHHHHHHHHHHHcCCEEeccHHHHHHHHHHH--hHH--hCccCeEEEEECCCCchhcCh
Confidence            67899999999999999999999999999999999999999886  332  3578999999998 7899886

>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Cystathionine beta-synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-59  Score=432.43  Aligned_cols=297  Identities=22%  Similarity=0.305  Sum_probs=242.1

Q ss_pred             HHHHHhccccCCCCCccchhhhhhcC--CeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHH
Q 020236           17 EAQKRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAAL   91 (329)
Q Consensus        17 ~~~~~~~~~i~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~   91 (329)
                      +.+++|.+.||+|||+++++|++.+|  .+||+|+|++|||||||||++.+++..+.+++.   .++|+++||||||+|+
T Consensus        33 ~~~~~i~~~IG~TPLv~l~~ls~~~G~~~~i~~K~E~~nptGSfKdRga~~~i~~a~~~g~~~~~~~vv~aSsGN~g~a~  112 (355)
T d1jbqa_          33 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGL  112 (355)
T ss_dssp             SEESSGGGGSSCCCEEECCSHHHHTTCCSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHHTCSCTTCEEEEECSSHHHHHH
T ss_pred             cccccHHHhcCCCCcEECcchhHHhCCCCEEEEEECCCCCccCHHHHHHHHHHHHHHHcCCcccCceEEEecccchhhHH
Confidence            34556778899999999999999887  589999999999999999999999999877652   5789999999999999


Q ss_pred             HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHH-----HHHHHHHHHHHH-cCCEeeCCCCCcc-cccccC
Q 020236           92 SLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMH-----SRESVASKVLEE-TGAVLVHPYNDGR-IISGQG  164 (329)
Q Consensus        92 A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~-----~~~~~a~~~~~~-~~~~~~~~~~n~~-~~~g~~  164 (329)
                      |++|+++|++|+||+|+.+++.|+++|+.+||+|+.++.+..     +......++..+ ...++.++++|+. .++||+
T Consensus       113 A~~a~~~Gi~~~iv~p~~~~~~k~~~i~~~GA~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~  192 (355)
T d1jbqa_         113 ALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYD  192 (355)
T ss_dssp             HHHHHHHTCEEEEEECSCCCHHHHHHHHHTTCEEEECCC-------CCHHHHHHHHHHHSTTEECCCTTTCTHHHHHHHH
T ss_pred             HHHHHhccCCeEEEeeccchHHHHHHHHhcCCeEEEecccccchhhhhhhhHHHHHHHhccccccccccCcccchhhhcc
Confidence            999999999999999999999999999999999999876421     223333344333 4667777776654 678999


Q ss_pred             cchHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCC
Q 020236          165 TISLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFL  243 (329)
Q Consensus       165 t~~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~  243 (329)
                      |+++||++|++ +||+||+|+|+||+++|++.+|+..++.+++++|+|.+++.+.........    ......+|+..+.
T Consensus       193 t~~~EI~~ql~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~kii~vep~gs~~~~~~~~~~~~----~~~~~i~gi~~~~  268 (355)
T d1jbqa_         193 TTADEILQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTE----QTTYEVEGIGYDF  268 (355)
T ss_dssp             THHHHHHHHHTTCCCEEEEECSSSHHHHHHHHHHHHHCTTCEEEEEEETTCSCSSSGGGGCCS----CCCCSCCSCCCSS
T ss_pred             cchhhhhhhcCCCCCeeEecccCCchHHHHHHHHhhcCCcceEEeecccCCcccccccccccc----ccccccccccccc
Confidence            99999999997 799999999999999999999999999999999999998644322222111    1122334554431


Q ss_pred             CcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          244 GDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       244 ~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      .  ........++.++.|+|+|+++++++|++++|+++|||||++++|++++  +++  +.++++||+|+|| |.+|+|+
T Consensus       269 ~--~~~~~~~~~~~~~~v~D~ea~~~~~~L~~~eGi~vepSsaa~laa~l~~--~~~--~~~g~~VVvvlcd~G~kY~s~  342 (355)
T d1jbqa_         269 I--PTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA--AQE--LQEGQRCVVILPDSVRNYMTK  342 (355)
T ss_dssp             C--CTTCCGGGCCEEEEECHHHHHHHHHHHHHHSCCCBCHHHHHHHHHHHHH--GGG--CCTTCEEEEEECBBGGGGTTT
T ss_pred             c--hhhhhhhheeeeccCCHHHHHHHHHHHHHHhCcEEeHHHHHHHHHHHHH--HHh--cCCcCEEEEEECCCCcccccc
Confidence            1  1112356899999999999999999999999999999999999999987  443  4578999999996 8999988


Q ss_pred             H
Q 020236          323 L  323 (329)
Q Consensus       323 ~  323 (329)
                      +
T Consensus       343 ~  343 (355)
T d1jbqa_         343 F  343 (355)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1y7la1 c.79.1.1 (A:2-311) O-acetylserine sulfhydrylase (Cysteine synthase) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Haemophilus influenzae [TaxId: 727]

Probab=100.00  E-value=5.8e-57  Score=410.66  Aligned_cols=294  Identities=19%  Similarity=0.216  Sum_probs=241.9

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhc---cCCeEEEECCchHHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ---AIKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~---~~~~vv~~ssGN~g~a~A~~a   95 (329)
                      ++++...||+|||+++++|++  +.+||+|+|++|||||||||++.+++..+.+++   +.++|+++||||||.|+|++|
T Consensus         3 y~~~~~~ig~TPLv~~~~l~~--~~~I~lK~E~~nptGSfK~RgA~~~i~~a~~~g~~~~~~~vv~~SsGN~g~a~A~~a   80 (310)
T d1y7la1           3 YADNSYSIGNTPLVRLKHFGH--NGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTLTKGKEIVDATSGNTGIALAYVA   80 (310)
T ss_dssp             CSSGGGGCCCCCEEECSSSSS--TTCEEEEETTSSGGGBTHHHHHHHHHHHHHHTTSSCTTCEEEESCCSHHHHHHHHHH
T ss_pred             cchhhhhcCCCCeEECCCCCC--CCEEEEEECCCCCcCcCHHHHHHHHHHHHHHcCCCCCCceeeeecCCCchHHHHHHH
Confidence            356778899999999988875  679999999999999999999999998876653   247899999999999999999


Q ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHH--HHH--cCCEeeCCCCCccc-ccccCcchHHH
Q 020236           96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKV--LEE--TGAVLVHPYNDGRI-ISGQGTISLEF  170 (329)
Q Consensus        96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~--~~~--~~~~~~~~~~n~~~-~~g~~t~~~Ei  170 (329)
                      +.+|++|+||+|+++++.|+++++.+||+|+.+++..+...+.+++.  ..+  .+++++++++|+.. ..|+.+++.||
T Consensus        81 ~~~G~~~~i~~p~~~~~~k~~~~~~~GA~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~Ei  160 (310)
T d1y7la1          81 AARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAKGMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEI  160 (310)
T ss_dssp             HHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHHCTTTEECCCTTTCTHHHHHHHHTHHHHH
T ss_pred             HHhhccccccchhhhhhhhhhhHHHhCCceEeccCccccchhhHHHHHHHHhhcCccccCCCCcchhhHHHhhhhHHHHH
Confidence            99999999999999999999999999999999998654433333222  222  46788899999874 56899999999


Q ss_pred             HhhCC-CCCEEEEeCCCChHHHHHHHHHHH-hCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccH
Q 020236          171 LEQVP-LLDTIIVPISGGGLISGVALAAKS-IKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTW  248 (329)
Q Consensus       171 ~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~-~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~  248 (329)
                      ++|++ +||+||+|+|+||+++|++.++|. ..|.+++++|+|.+++.+...........   ..+...|++.+  ...+
T Consensus       161 ~~~~~~~~d~vv~~~G~Gg~~~G~~~~lk~~~~~~~~~i~ve~~~~~~~~~~~~~~~~~~---~~~~~~gig~~--~~~~  235 (310)
T d1y7la1         161 WKDTDGKVDVVVAGVGTGGSITGISRAIKLDFGKQITSVAVEPVESPVISQTLAGEEVKP---GPHKIQGIGAG--FIPK  235 (310)
T ss_dssp             HHHTTTCEEEEEEECSSSHHHHHHHHHHHHTSCCCCEEEEEEETTSCHHHHHHHTCCCCC---CCCSCTTSCCS--SCCT
T ss_pred             HHhcCCCCCEEEecCcCCcchhHHHHHHHHhhcccceeccccccCchhhhhhhcCCcccc---CCceeeecccc--cccH
Confidence            99998 799999999999999999999986 67999999999999876655554443221   22344555532  2222


Q ss_pred             HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHH
Q 020236          249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGV  322 (329)
Q Consensus       249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~  322 (329)
                      .+.....++.+.|+|+|+++++++|++++|+++|||||++++|++++  ++... .++++||+|+|+ |.+|+|+
T Consensus       236 ~~~~~~~~~~~~v~d~ea~~~~~~l~~~eGi~vepssaa~laaa~~~--a~~~~-~~~~~vV~vlcd~g~kY~~t  307 (310)
T d1y7la1         236 NLDLSIIDRVETVDSDTALATARRLMAEEGILAGISSGAAVAAADRL--AKLPE-FADKLIVVILPSASERYLST  307 (310)
T ss_dssp             TCCGGGCCEEEEECHHHHHHHHHHHHHHHCCCBCHHHHHHHHHHHHH--HTSGG-GTTCEEEEEECBBCSSCCCT
T ss_pred             HHhhhhcceeccCCHHHHHHHHHHHHHHcCCEEeHHHHHHHHHHHHH--Hhhcc-CCcCEEEEEECCCcchhcCC
Confidence            33467889999999999999999999999999999999999999986  44433 267899999987 8999876

>d1wkva1 c.79.1.1 (A:2-383) O-acetylserine sulfhydrylase (Cysteine synthase) {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=100.00  E-value=2.3e-56  Score=413.45  Aligned_cols=280  Identities=20%  Similarity=0.228  Sum_probs=235.9

Q ss_pred             cCCCCCccchhhhhhcCCeEEEEecCCCCCC-ccchhhHHHHHhcCchhcc-CCeEEEECCchHHHHHHHHHHHcCCCEE
Q 020236           26 IHKTPVLSSETLNSMSGRSLFFKCECFQKGG-AFKFRGASNAVLSLDEDQA-IKGVVTHSSGNHAAALSLAAKLRGIPAY  103 (329)
Q Consensus        26 i~~TPl~~~~~l~~~~g~~i~~K~E~~nptG-S~KdR~a~~~l~~a~~~~~-~~~vv~~ssGN~g~a~A~~a~~~G~~~~  103 (329)
                      ..+|||+++ ++....|.+||+|+|++|||| |||||++.+++..+.++.+ ..+|+++||||||+|+|++|+.+|++|+
T Consensus        93 ~~PTPLvrl-~l~~~~G~~IylKlE~~NPtGgSfKdR~A~~~i~~A~~~~~~g~~VVeaSSGN~GiAlA~~aa~lGik~~  171 (382)
T d1wkva1          93 GKPTPLVRS-RLQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRRVEKGSLVADATSSNFGVALSAVARLYGYRAR  171 (382)
T ss_dssp             SCSCCEEEC-CCCCSTTEEEEEEEGGGSTTTSBTTHHHHHHHHHHHTTTSCTTCEEEEECCHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCEEEC-CCCCCCCCEEEEEecCCCCCCCccHHHHHHHHHHHHHhccCCCCEEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence            468999998 466667899999999999986 9999999999998755433 3569999999999999999999999999


Q ss_pred             EEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHHcCCEeeCCCCCcc-cccccCcchHHHHhhCC----C
Q 020236          104 IVIPKNAPKCKVENVVRYGGQVIWSEAT--MHSRESVASKVLEETGAVLVHPYNDGR-IISGQGTISLEFLEQVP----L  176 (329)
Q Consensus       104 i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~n~~-~~~g~~t~~~Ei~~ql~----~  176 (329)
                      ||+|+++++.|+++|+.+||+|+.++..  ..+..+++.+.+++.+++|++||.|+. ...|+.|+++||++|++    .
T Consensus       172 Iv~P~~~~~~K~~~ira~GAeVi~~~~~~~~~~~~~~a~~~a~~~~~~~~~q~~N~~~~~~h~~ttg~EI~eQl~~~~~~  251 (382)
T d1wkva1         172 VYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTVHLLPRVMKDSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLA  251 (382)
T ss_dssp             EEEETTSCHHHHHHHHHTTCEEEEETTCSSSGGGHHHHHHHHHHHCCEECCTTTCHHHHHHHHHTHHHHHHHHHHHTTCC
T ss_pred             EEeeccccccccccccccCcceeecCcchhhHHHHHHHhhhccccCccccccccccceeeehhhcchHHHHHHhhcCCCc
Confidence            9999999999999999999999999864  334455666777778999999999987 56778999999999985    5


Q ss_pred             CCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCcccHHHHhhcCC
Q 020236          177 LDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLTWPIVRDLVD  256 (329)
Q Consensus       177 ~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~~~~~~~~~~  256 (329)
                      +|+|++|+|+||+++|++.++|+.+|++|+|+|||.+++.+.            ..+.+..|       ..+....+..+
T Consensus       252 ~d~vv~~vGtGG~~~Gi~~~lk~~~p~vkiigVep~~~~~i~------------g~~~i~~g-------~~~~~~~d~~~  312 (382)
T d1wkva1         252 LRGVAGSLGTSGHMSAAAFYLQSVDPSIRAVLVQPAQGDSIP------------GIRRVETG-------MLWINMLDISY  312 (382)
T ss_dssp             EEEEEECCSSSHHHHHHHHHHHHHCTTCEEEEEEECTTCCCT------------TCCCGGGC-------CSHHHHSCCCC
T ss_pred             eeEEEEecccccccccceeehhhhCCccceeEeccccccccc------------cccccccC-------ccCccccccce
Confidence            899999999999999999999999999999999999876431            11222222       12333456778


Q ss_pred             cEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          257 DVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       257 ~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      .++.|+|+|+++++++|+++|||++|||||++++|++++  .+++.+ +++++|+|+|+ |.+|+|++++.++
T Consensus       313 ~i~~Vsd~Eai~a~r~La~~EGI~vgpSSGaavaaa~k~--a~~~~~-~~~~vVvIlcD~G~rYlstiyN~~~  382 (382)
T d1wkva1         313 TLAEVTLEEAMEAVVEVARSDGLVIGPSGGAAVKALAKK--AAEGDL-EPGDYVVVVPDTGFKYLSLVQNALE  382 (382)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHH--HHTTCS-CSEEEEEEECBBGGGCHHHHHHHHC
T ss_pred             EEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHH--HhhccC-CCCCEEEEECCCCccchHhhccCCC
Confidence            899999999999999999999999999999999999887  555444 34677888886 8999999998764

>d1v7ca_ c.79.1.1 (A:) Threonine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=8.4e-54  Score=396.30  Aligned_cols=297  Identities=23%  Similarity=0.250  Sum_probs=254.3

Q ss_pred             hccccCCCCCccchh--hhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcC
Q 020236           22 ISLYIHKTPVLSSET--LNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRG   99 (329)
Q Consensus        22 ~~~~i~~TPl~~~~~--l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G   99 (329)
                      +....|+|||+++++  ++..+|.+||+|+|++|||||||||++.+++.++.+ .+.++++++|+||||.++|++|+++|
T Consensus        22 i~~~~gnTPLv~l~~~~l~~~~g~~i~~K~E~~nptGSfK~R~a~~~i~~a~~-~g~~~iv~~SsGN~g~a~a~~a~~~g  100 (351)
T d1v7ca_          22 ISLLEGSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVE-GGAQAVACASTGNTAASAAAYAARAG  100 (351)
T ss_dssp             CCSCCCCCCEEECCCCHHHHTTTEEEEEEEGGGSTTSBTHHHHHHHHHHHHHH-TTCSEEEEECSSHHHHHHHHHHHHHT
T ss_pred             cccCCCCCCCeECCCcchhhccCCEEEEEEcCCCCccChHHHHHHHHHHHHHh-cCCCeeeeeccccHHHHHHHHHhhhc
Confidence            344558999999876  567788999999999999999999999999998854 46789999999999999999999999


Q ss_pred             CCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC-CC
Q 020236          100 IPAYIVIPKNA-PKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP-LL  177 (329)
Q Consensus       100 ~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~-~~  177 (329)
                      ++|+|+||++. +..+..+++.+||+|+.++++++++.+.+++++++.++++.++ +|++.++||.++++||++|++ .+
T Consensus       101 ~~~~i~~p~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~a~~l~~~~~~~~~~~-~~~~~~~g~~t~~~Ei~eQl~~~~  179 (351)
T d1v7ca_         101 ILAIVVLPAGYVALGKVAQSLVHGARIVQVEGNFDDALRLTQKLTEAFPVALVNS-VNPHRLEGQKTLAFEVVDELGDAP  179 (351)
T ss_dssp             CEEEEEEETTCSCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSSCEECST-TSHHHHHHHTHHHHHHHHHHSSCC
T ss_pred             ccceeecCCchHHHHHHHhhhcCCCceEeeccccchhhhhHHHHhhhhccccccc-cCchhhhhhhhHHHHHHHHHhhhc
Confidence            99999999885 5678888999999999999999999999999999988877654 578899999999999999998 79


Q ss_pred             CEEEEeCCCChHHHHHHHHHHHh------CCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccC---CCcccH
Q 020236          178 DTIIVPISGGGLISGVALAAKSI------KPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAF---LGDLTW  248 (329)
Q Consensus       178 d~vv~~~GtGg~~~Gi~~~~k~~------~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~---~~~~~~  248 (329)
                      |++++++|+||+++|++.+++..      .+.+++++|++.++.++....    +.  ....+++.+....   .+...+
T Consensus       180 d~~~~~~g~gg~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~  253 (351)
T d1v7ca_         180 HYHALPVGNAGNITAHWMGYKAYHALGKAKRLPRMLGFQAAGAAPLVLGR----PV--ERPETLATAIRIGNPASWQGAV  253 (351)
T ss_dssp             SEEEEECSSSHHHHHHHHHHHHHHHTTSCSSCCEEEEEEEGGGCHHHHTS----CC--SSCCCSCGGGCCSSCTTHHHHH
T ss_pred             cceeeeecccCCcchhHHHHHHHhhcccccCCcceeeeeccccchhhhcc----cc--cCCcccccccccccCcccchhh
Confidence            99999999999999999988764      267899999999987764332    22  1233444444332   234456


Q ss_pred             HHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChHHHHHhh
Q 020236          249 PIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLGVLWDSF  327 (329)
Q Consensus       249 ~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~~~~~~~  327 (329)
                      ...+++.+.++.|+|+|+++++++++++||+++||+||++++|++++  .+++.++++++||+++|| |++|+|++++.+
T Consensus       254 ~~~~~~~~~~~~V~d~ea~~a~~~l~~~eGi~v~pssg~alAa~~~~--~~~~~~~~~~~VV~i~tg~G~k~~~~~~~~~  331 (351)
T d1v7ca_         254 RAKEESGGVIEAVTDEEILFAYRYLAREEGIFCEPASAAAMAGVFKL--LREGRLEPESTVVLTLTGHGLKDPATAERVA  331 (351)
T ss_dssp             HHHHHHTCEEEEECHHHHHHHHHHHHHHTCCCBCHHHHHHHHHHHHH--HHTTCSCSSEEEEEEECBBGGGCGGGGGGTC
T ss_pred             hhhhccCcEEEEEchHHHHHHHHHHHHHcCcEECHHHHHHHHHHHHH--HHhCCCCCCCeEEEEeCCCcccCHHHHHHHh
Confidence            66788999999999999999999999999999999999999999987  677777789999999998 899999998865


Q ss_pred             h
Q 020236          328 R  328 (329)
Q Consensus       328 ~  328 (329)
                      +
T Consensus       332 ~  332 (351)
T d1v7ca_         332 E  332 (351)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1fcja_ c.79.1.1 (A:) O-acetylserine sulfhydrylase (Cysteine synthase) {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: O-acetylserine sulfhydrylase (Cysteine synthase)
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=8.8e-54  Score=388.38  Aligned_cols=287  Identities=19%  Similarity=0.218  Sum_probs=232.1

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhcc---CCeEEEECCchHHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQA---IKGVVTHSSGNHAAALSLAA   95 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~---~~~vv~~ssGN~g~a~A~~a   95 (329)
                      ++++.++||+|||+++++|   .+.+||+|+|++|||||||+|++.+++.++.+++.   ..+++++|+||||.|+|++|
T Consensus         4 ~~~i~~~ig~TPLi~L~~l---~~~~i~~K~E~~~ptGSfK~Rga~~~i~~a~~~g~~~~~~~vv~assGn~g~a~A~~a   80 (302)
T d1fcja_           4 YEDNSLTIGHTPLVRLNRI---GNGRILAKVESRNPSFSVKCRIGANMIWDAEKRGVLKPGVELVEPTNGNTGIALAYVA   80 (302)
T ss_dssp             ESSGGGGCCCCCEEECSSS---SSSCEEEEETTSSGGGBTHHHHHHHHHHHHHHHTCCCTTCEEEEECSSHHHHHHHHHH
T ss_pred             HhHHHHhhCCCCcEECCcc---CCCEEEEEecCCCCCCCCHHHHHHHHHHHHHHcCCCCCCceEEEeccccchhHHHHHH
Confidence            3567788999999987654   46799999999999999999999999998866543   36799999999999999999


Q ss_pred             HHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHH----cCCEeeCCCCCcc-cccccCcchHHH
Q 020236           96 KLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEE----TGAVLVHPYNDGR-IISGQGTISLEF  170 (329)
Q Consensus        96 ~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~n~~-~~~g~~t~~~Ei  170 (329)
                      +.+|++|++|+|...++.++.+++.+|++|+.+++..++....++.....    .+.++.++++++. ...|+.+++.||
T Consensus        81 ~~~g~~~~i~~p~~~~~~k~~~~~~~ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ti~~Ei  160 (302)
T d1fcja_          81 AARGYKLTLTMPETMSIERRKLLKALGANLVLTEGAKGMKGAIQKAEEIVASDPQKYLLLQQFSNPANPEIHEKTTGPEI  160 (302)
T ss_dssp             HHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGGGHHHHHHHHHHHHHHTSTTTEEECCTTTCTHHHHHHHHTHHHHH
T ss_pred             HHhccCCceEEeecCcHHHHHHHHHhccceEEeccccccchhhhHHHHHHhhhccceeccccccccchhHHHHhHHHHHH
Confidence            99999999999999999999999999999999998766655554444322    3567777877765 667899999999


Q ss_pred             HhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCC--EEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCccc
Q 020236          171 LEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAI--RILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGDLT  247 (329)
Q Consensus       171 ~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~--~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~~~  247 (329)
                      ++|++ +||+||+|+|+||+++|++.++|...+.+  .++++++..+..+.........  . ...+..+|++.+  ...
T Consensus       161 ~e~~~~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~~~~v~~~~~~s~~~~~~~~~~~~--~-~~~~~~~gig~~--~~~  235 (302)
T d1fcja_         161 WEDTDGQVDVFISGVGTGGTLTGVTRYIKGTKGKTDLITVAVEPTDSPVIAQALAGEEI--K-PGPHKIQGIGAG--FIP  235 (302)
T ss_dssp             HHHTTTCCCEEEEECSSSHHHHHHHHHHHTTTCCTTCEEEEEEETTSCHHHHHHTTCCC--C-CCCCSCTTSCCS--SCC
T ss_pred             HHhcCCCCCEEEEcCCCccccccceeeeeeccccccccccccccccchhhhcccccccc--c-cCCceecccCCC--cCc
Confidence            99998 79999999999999999999999998755  5666777777655443333221  1 223344566543  122


Q ss_pred             HHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCC
Q 020236          248 WPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG  316 (329)
Q Consensus       248 ~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg  316 (329)
                      +.+....+|+.+.|+|+|+++++++|++++|+++||+||++++|++++  +++.. .++++||+|+||.
T Consensus       236 ~~l~~~~~d~~~~Vsd~ea~~a~~~l~~~~gi~~epssaa~laaa~~l--~~~~~-~~~~~vvvilc~~  301 (302)
T d1fcja_         236 GNLDLKLIDKVVGITNEEAISTARRLMEEEGILAGISSGAAVAAALKL--QEDES-FTNKNIVVILPSS  301 (302)
T ss_dssp             TTCCGGGCSEEEEECHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH--TTSGG-GTTCCEEEEECBC
T ss_pred             hhhhcccCcEEEEECHHHHHHHHHHHHHHcCCEEcHHHHHHHHHHHHH--HHhcC-CCcCeEEEEeCCC
Confidence            334467889999999999999999999999999999999999999886  44332 3678999999983

>d1e5xa_ c.79.1.1 (A:) Threonine synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=1.6e-52  Score=401.40  Aligned_cols=301  Identities=19%  Similarity=0.206  Sum_probs=250.0

Q ss_pred             ccccCCCCCccchhhhhh-cC-CeEEEEecCCCCCCccchhhHHHHHhcCchhc----cCCeEEEECCchHHHHHHHHHH
Q 020236           23 SLYIHKTPVLSSETLNSM-SG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQ----AIKGVVTHSSGNHAAALSLAAK   96 (329)
Q Consensus        23 ~~~i~~TPl~~~~~l~~~-~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~----~~~~vv~~ssGN~g~a~A~~a~   96 (329)
                      ....|+|||+++++|+++ +| .+||+|+|++|||||||||++.+++..+.+.+    +..+|+++||||||+|+|++|+
T Consensus       116 ~lgeG~TPLv~~~~L~~~~lG~~~ly~K~E~~nPTGSfKDRga~~~i~~a~~~~~~~~~~~~vv~aSsGNtg~AlAa~aa  195 (477)
T d1e5xa_         116 SAFEGNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVGCASTGDTSAALSAYCA  195 (477)
T ss_dssp             CCCCCCCCEEECHHHHHHHHCCSSEEEEETTSSTTSBTTHHHHHHHHHHHHHHHHTTCCCCEEEECCCSHHHHHHHHHHH
T ss_pred             ccCCCCCceEEchhhhHhhCCCceEEEEECCCCCCcccHHHHHHHHHHHHHHhccccCCcceEEeecCchHHHHHHHHHH
Confidence            445789999999999876 67 69999999999999999999999998774322    3457999999999999999999


Q ss_pred             HcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCcccccccCcchHHHHhhCC
Q 020236           97 LRGIPAYIVIPKN-APKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDGRIISGQGTISLEFLEQVP  175 (329)
Q Consensus        97 ~~G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~~~~~g~~t~~~Ei~~ql~  175 (329)
                      ++|++|+||+|++ .++.|+.+++.+||+|+.++++++++.+.+++++++.+++ +.++.|+++++|++|+++||++|+.
T Consensus       196 ~~Gi~~~I~~P~~~~s~~k~~~~~~~GA~V~~v~g~~dda~~~~~e~a~~~~~~-~~~~~N~~~~~g~~t~~~Ei~~ql~  274 (477)
T d1e5xa_         196 SAGIPSIVFLPANKISMAQLVQPIANGAFVLSIDTDFDGCMKLIREITAELPIY-LANSLNSLRLEGQKTAAIEILQQFD  274 (477)
T ss_dssp             HHTCCEEEEEEGGGCCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHSCEE-EGGGSHHHHHHHHTHHHHHHHHHTT
T ss_pred             hcCCCeEEEeCCCCcCHHHHHHHHhcCccccccccCchhhHHHhhhhcccccee-cccccccccchhhhHHHHHHHHhhc
Confidence            9999999999986 7888999999999999999999999999999998876654 5667899999999999999999997


Q ss_pred             --CCCEEEEeCCCChHHHHHHHHHHHhC------CCCEEEEEecCCCchHHHHHHcCCe--eecCCCCccccccccCC--
Q 020236          176 --LLDTIIVPISGGGLISGVALAAKSIK------PAIRILAAEPIGANDAAQSKAAGRI--ITLLETNTVADGLRAFL--  243 (329)
Q Consensus       176 --~~d~vv~~~GtGg~~~Gi~~~~k~~~------~~~~vi~v~~~~~~~~~~~~~~g~~--~~~~~~~t~~~gl~~~~--  243 (329)
                        .||++++|+|+||+++|++.++++..      +.+++++|++.++++++++++.|..  .+.....|++.++..+.  
T Consensus       275 ~~~pd~v~vp~G~gg~~~g~~~g~~~l~~~G~~~~~P~~~~v~a~~~~~~~~~~~~g~~~~~~~~~~~T~a~~i~i~~p~  354 (477)
T d1e5xa_         275 WQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDRIPRMVCAQAANANPLYLHYKSGWKDFKPMTASTTFASAIQIGDPV  354 (477)
T ss_dssp             SCCCSEEEEECSSTHHHHHHHHHHHHHHHTTSSSCCCEEEEEEETTSSTHHHHHHTTTTTCCC----------------C
T ss_pred             cccceeeeecccCCcchhhHHHHHHHHhhcCccccCceEEEEeccchhhHHHHHHcCCCccccccccccccccccccccc
Confidence              59999999999999999999998753      4579999999999999999998753  34446678888888652  


Q ss_pred             -CcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCC-CCCChH
Q 020236          244 -GDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSG-GNVDLG  321 (329)
Q Consensus       244 -~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tg-g~~~~~  321 (329)
                       .+..+..++...+.++.|+|+|++++++. ++++|+++||+||++++|++++  .+++.+.++++||+++|| |.++++
T Consensus       355 ~~~~~l~~~~~~~g~~~~VsDeei~~a~~l-~~~eGi~vePssA~alAal~kl--~~~g~i~~~~~VVvl~Tg~glKf~~  431 (477)
T d1e5xa_         355 SIDRAVYALKKCNGIVEEATEEELMDAMAQ-ADSTGMFICPHTGVALTALFKL--RNQGVIAPTDRTVVVSTAHGLKFTQ  431 (477)
T ss_dssp             CCHHHHHHHHHTTCEEEEECHHHHHHHHHH-HHHTTCCCCHHHHHHHHHHHHH--HHTTSSCTTCCEEEEECBCGGGGHH
T ss_pred             chHHHHHHHhhcCceEEecCHHHHHHHHHH-HHHCCcEEChHHHHHHHHHHHH--HHhCCCCCCCcEEEEeCcCcccCHH
Confidence             23445566778889999999999999985 5789999999999999999987  777778899999999999 788888


Q ss_pred             HHHHhh
Q 020236          322 VLWDSF  327 (329)
Q Consensus       322 ~~~~~~  327 (329)
                      ...+.+
T Consensus       432 ~~~~~~  437 (477)
T d1e5xa_         432 SKIDYH  437 (477)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            765543

>d1v8za1 c.79.1.1 (A:1-386) Tryptophan synthase, beta-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=7.9e-51  Score=380.73  Aligned_cols=300  Identities=21%  Similarity=0.220  Sum_probs=234.6

Q ss_pred             cccC-CCCCccchhhhhhcC-CeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCC
Q 020236           24 LYIH-KTPVLSSETLNSMSG-RSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIP  101 (329)
Q Consensus        24 ~~i~-~TPl~~~~~l~~~~g-~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~  101 (329)
                      .+++ +|||+++++|++.+| ++||+|+|++|||||||||++.+++..+.+.+..+.++++|+||||.++|++|+++|++
T Consensus        45 ~~~~rpTPLi~~~~Ls~~lgg~~Iy~K~E~lnptGS~KdR~a~~~i~~a~~~G~~~~v~~~s~Gn~g~a~A~aaa~~G~~  124 (386)
T d1v8za1          45 TWAGRPTPLYYAKRLTEKIGGAKIYLKREDLVHGGAHKTNNAIGQALLAKFMGKTRLIAETGAGQHGVATAMAGALLGMK  124 (386)
T ss_dssp             HTTCCSCCEEECHHHHHHHTSSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHTTCE
T ss_pred             hcCCCCCcceEhHhhHHhcCCCeEEEEeccCCCCCCccchHHHHHHHHHhhcCCceeEeecccchHHHHHHHHHHHcCCc
Confidence            4565 799999999999875 89999999999999999999999999987776666788889999999999999999999


Q ss_pred             EEEEEcCC---CCHHHHHHHHHcCCEEEEECCC---HHHHHHHHH-HHHHHcCCE------eeCCCCCcc-cccccCcch
Q 020236          102 AYIVIPKN---APKCKVENVVRYGGQVIWSEAT---MHSRESVAS-KVLEETGAV------LVHPYNDGR-IISGQGTIS  167 (329)
Q Consensus       102 ~~i~~p~~---~~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~-~~~~~~~~~------~~~~~~n~~-~~~g~~t~~  167 (329)
                      |+||||..   ....|+.+++.+||+|+.+++.   ..++...+. +........      ..++++++. ...++.+++
T Consensus       125 ~~i~mp~~~~~~~~~kv~~~~~~GA~Vv~v~~~~~~~~da~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (386)
T d1v8za1         125 VDIYMGAEDVERQKMNVFRMKLLGANVIPVNSGSRTLKDAINEALRDWVATFEYTHYLIGSVVGPHPYPTIVRDFQSVIG  204 (386)
T ss_dssp             EEEEEEHHHHTTCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHHHHHHH
T ss_pred             ccccccchhhhhhHHHHHHHHhcCCeEEEecCCcchHHHHHHHHHHHHHhhhhhhhhccccccCccccchhhhccchhhh
Confidence            99999854   4467999999999999999763   444444433 333333221      123444554 346789999


Q ss_pred             HHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHH----HHHHcCCeeecC--------
Q 020236          168 LEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAA----QSKAAGRIITLL--------  230 (329)
Q Consensus       168 ~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~----~~~~~g~~~~~~--------  230 (329)
                      .|+.+|+.     .||+||+|+|+|++++|+..++++ .+++++|+|+|.+++...    ..+..|......        
T Consensus       205 ~Ei~~q~~~~~g~~pd~vv~~vGgG~~~~g~~~~~~~-~~~v~iigvep~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~  283 (386)
T d1v8za1         205 REAKAQILEAEGQLPDVIVACVGGGSNAMGIFYPFVN-DKKVKLVGVEAGGKGLESGKHSASLNAGQVGVFHGMLSYFLQ  283 (386)
T ss_dssp             HHHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHCEEEEETTEEEEECB
T ss_pred             hhHHHHHHHhcCCCCCEEEECCCChHHHHHHHHHhhh-ccCceEEEEecCcccccccccccccccCccccccchhheecc
Confidence            99988873     599999999999999999877654 689999999998765432    234444332211        


Q ss_pred             -------CCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCC
Q 020236          231 -------ETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPA  302 (329)
Q Consensus       231 -------~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~  302 (329)
                             ...+...++... +++....+.....++.+.|+|+|+++++++|+++|||+++|+||+++++++++  +++  
T Consensus       284 ~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~VtD~E~~~a~~~La~~EGI~~~~~sa~alA~a~kl--a~~--  359 (386)
T d1v8za1         284 DEEGQIKPTHSIAPGLDYPGVGPEHAYLKKIQRAEYVTVTDEEALKAFHELSRTEGIIPALESAHAVAYAMKL--AKE--  359 (386)
T ss_dssp             CTTSCBCCCCCSSTTSCCSBCCHHHHHHHHTTSEEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHH--HHT--
T ss_pred             CCCCcccccccccccccccccchHHHHHHhcCceEEEEECHHHHHHHHHHHHHhcCCeeccHHHHHHHHHHHH--HHH--
Confidence                   122333333332 44455555566677899999999999999999999999999999999999987  544  


Q ss_pred             CCCCCeEEEEeCC-CCCChHHHHHhhh
Q 020236          303 WQDSKKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       303 ~~~~~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      +.++++||+++|| |++|++++.+++.
T Consensus       360 ~~~~~~VV~iltG~G~kD~~~~~~~~g  386 (386)
T d1v8za1         360 MSRDEIIIVNLSGRGDKDLDIVLKVSG  386 (386)
T ss_dssp             SCTTCEEEEEECBBSGGGHHHHHHHHC
T ss_pred             cCCCCEEEEEeCCCccccHHHHHHhcC
Confidence            5689999999999 9999999999873

>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Tryptophan synthase, beta-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=5.2e-50  Score=374.03  Aligned_cols=300  Identities=19%  Similarity=0.194  Sum_probs=235.0

Q ss_pred             cccCC-CCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCE
Q 020236           24 LYIHK-TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPA  102 (329)
Q Consensus        24 ~~i~~-TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~  102 (329)
                      .++|+ |||+++++|++.+|++||+|+|++|||||||||++.+++..+.+.+..+.++++|+||||.++|++|+++|++|
T Consensus        50 ~~~grpTPL~~~~~Ls~~lg~~IylK~E~lnptGS~K~R~a~~~i~~A~~~G~~~iv~easaGN~g~a~A~aaa~~Gl~~  129 (390)
T d1qopb_          50 NYAGRPTALTKCQNITAGTRTTLYLKREDLLHGGAHKTNQVLGQALLAKRMGKSEIIAETGAGQHGVASALASALLGLKC  129 (390)
T ss_dssp             HTTCCSCCEEECHHHHTTSSEEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTCCEEEEEESSSHHHHHHHHHHHHHTCEE
T ss_pred             hcCCCCchhhEhHhhhhhhCCEEEEEEecCCcccccchhHHHHHHHHHhhcCCceeeeehhHHHHHHHHHHHHHhccCce
Confidence            46654 99999999999999999999999999999999999999999876666667788999999999999999999999


Q ss_pred             EEEEcCCCC---HHHHHHHHHcCCEEEEECCC---HHHHHHH-HHHHHHHcC-CEeeC-CCCCc----c-cccccCcchH
Q 020236          103 YIVIPKNAP---KCKVENVVRYGGQVIWSEAT---MHSRESV-ASKVLEETG-AVLVH-PYNDG----R-IISGQGTISL  168 (329)
Q Consensus       103 ~i~~p~~~~---~~~~~~~~~~Ga~v~~~~~~---~~~~~~~-a~~~~~~~~-~~~~~-~~~n~----~-~~~g~~t~~~  168 (329)
                      +||||+..+   ..++.+|+.+||+|+.++..   ..+.... .+....... ..+.. +..++    . ..+++.+++.
T Consensus       130 ~I~mp~~~~~~k~~~v~~m~~~GAeVv~v~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iG~  209 (390)
T d1qopb_         130 RIYMGAKDVERQSPNVFRMRLMGAEVIPVHSGSATLKDACNEALRDWSGSYETAHYMLGTAAGPHPYPTIVREFQRMIGE  209 (390)
T ss_dssp             EEEEEHHHHHHCHHHHHHHHHTTCEEEEECSTTSSHHHHHHHHHHHHHHHTTTEEECCCSSCSSTTHHHHHHHTTTHHHH
T ss_pred             EEeecccccccchHHHHHHHhcCceEEEecCCchhhhHhHHHHHHHHhhhhhhhhhccccccccccccccccchhhhhcc
Confidence            999998654   56789999999999999753   3343333 333444432 33332 22222    2 3578999999


Q ss_pred             HHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchH----HHHHHcCCee------------
Q 020236          169 EFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDA----AQSKAAGRII------------  227 (329)
Q Consensus       169 Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~----~~~~~~g~~~------------  227 (329)
                      |+.+|+.     .||+||+|+|+|++++|++.+|++ .+.+++++++|.+...-    ...+..|.+.            
T Consensus       210 e~~~q~~~~~g~~pD~vv~~vGgGs~~~G~~~~f~~-~~~~~~ig~ep~~~g~~~~~~~a~~~~g~~g~~~~~~~~~~~~  288 (390)
T d1qopb_         210 ETKAQILDKEGRLPDAVIACVGGGSNAIGMFADFIN-DTSVGLIGVEPGGHGIETGEHGAPLKHGRVGIYFGMKAPMMQT  288 (390)
T ss_dssp             HHHHHHHHHHSSCCSEEEEECSSSHHHHHHHGGGTT-CTTSEEEEEEEEETBGGGTBSCCHHHHSEEEEETEEEEEECBC
T ss_pred             hhHHHHHHHcCCccceEEecccccchhhheeccccc-ccceeEeccccccccccccccccccccCccccccccccccccc
Confidence            9988863     599999999999999999999876 46799999998653210    0012222211            


Q ss_pred             ---ecCCCCccccccccC-CCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCC
Q 020236          228 ---TLLETNTVADGLRAF-LGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAW  303 (329)
Q Consensus       228 ---~~~~~~t~~~gl~~~-~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~  303 (329)
                         .....++++.|+... +++..+.+.+...++.+.|+|+|+++++++|++.|||+++|+++.|+++++++  +++. .
T Consensus       289 ~~g~~~~~~s~a~gl~~~~~~~~~~~l~~~g~~~~~~vtD~Ea~~a~~~La~~EGI~~a~Esa~Ava~Ai~~--a~~~-~  365 (390)
T d1qopb_         289 ADGQIEESYSISAGLDFPSVGPQHAYLNSIGRADYVSITDDEALEAFKTLCRHEGIIPALESSHALAHALKM--MREQ-P  365 (390)
T ss_dssp             TTSCBCCCCCSSGGGCCSSCCHHHHHHHHTTSSEEEEEEHHHHHHHHHHHHHHHSCCBCHHHHHHHHHHHHH--HHHS-T
T ss_pred             CCCccccccccccccccccchhHHHHHHhcCceEEEEECHHHHHHHHHHHHHhcCCeecCchHHHHHHHHHH--hhhc-C
Confidence               112356788888864 67777777777788999999999999999999999999999999999998876  3322 2


Q ss_pred             CCCCeEEEEeCC-CCCChHHHHHhh
Q 020236          304 QDSKKIGIVLSG-GNVDLGVLWDSF  327 (329)
Q Consensus       304 ~~~~~vv~v~tg-g~~~~~~~~~~~  327 (329)
                      .++++||+++|| |++|++++.++|
T Consensus       366 ~~~~~VVv~lsG~G~kD~~~~~~~l  390 (390)
T d1qopb_         366 EKEQLLVVNLSGRGDKDIFTVHDIL  390 (390)
T ss_dssp             TSCEEEEEEECBBCGGGHHHHHHHC
T ss_pred             CCCCEEEEEECCCCccCHHHHHhhC
Confidence            367788888999 999999999875

>d1j0aa_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.3e-44  Score=330.06  Aligned_cols=294  Identities=18%  Similarity=0.124  Sum_probs=218.7

Q ss_pred             HHHhccccCCCCCccchhhhhhcCCeEEEEecCCC--CCCccchhhHHHHHhcCchhccCCeE--EEECCchHHHHHHHH
Q 020236           19 QKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQ--KGGAFKFRGASNAVLSLDEDQAIKGV--VTHSSGNHAAALSLA   94 (329)
Q Consensus        19 ~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~n--ptGS~KdR~a~~~l~~a~~~~~~~~v--v~~ssGN~g~a~A~~   94 (329)
                      .+++....++|||+++++|++.+|.+||+|+|++|  ||||||||++.+++.++.+++ .+.+  +++|+||||.|+|++
T Consensus        12 ~p~i~l~~~~TPL~~~~~L~~~~G~~v~iK~Ed~~~~~tgS~K~R~~~~~i~~a~~~g-~~~~~~~~~s~gN~g~a~A~~   90 (325)
T d1j0aa_          12 FPRVELIPWETPIQYLPNISREIGADVYIKRDDLTGLGIGGNKIRKLEYLLGDALSKG-ADVVITVGAVHSNHAFVTGLA   90 (325)
T ss_dssp             CCCCCCCCSCCCEEECHHHHHHHTSEEEEEEGGGSCSTTCSTHHHHHHHHHHHHHHTT-CSEEEEECCTTCHHHHHHHHH
T ss_pred             CCcccCCCCCCceeEHHHhHHHHCCEEEEEecCCCCCCcchhHHHHHHHHHHHHHHCC-CCeeEEEeeCcchHHHHHHHH
Confidence            34556677899999999999999999999999877  999999999999998886553 4443  345889999999999


Q ss_pred             HHHcCCCEEEEEcCCCCHHHHHHHHHc---CCEEEEECCCHHH--H-HHHHHHHHHH-cC-CEeeCCCCCcccccccCcc
Q 020236           95 AKLRGIPAYIVIPKNAPKCKVENVVRY---GGQVIWSEATMHS--R-ESVASKVLEE-TG-AVLVHPYNDGRIISGQGTI  166 (329)
Q Consensus        95 a~~~G~~~~i~~p~~~~~~~~~~~~~~---Ga~v~~~~~~~~~--~-~~~a~~~~~~-~~-~~~~~~~~n~~~~~g~~t~  166 (329)
                      |+.+|++|++|+|...+..+...+..+   |++++..+.....  . .+.+.....+ .. +++.++++++....++.++
T Consensus        91 a~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (325)
T d1j0aa_          91 AKKLGLDAILVLRGKEELKGNYLLDKIMGIETRVYDAKDSFELMKYAEEIAEELKREGRKPYVIPPGGASPIGTLGYVRA  170 (325)
T ss_dssp             HHHTTCEEEEEEESCCCSCHHHHHHHHTTCEEEEESCCSTTTHHHHHHHHHHHHTTSSCCEEEECGGGCSHHHHTHHHHH
T ss_pred             HhhhcCceEEEeecccccchhhhhccccceeEEeccCcccccchHHHHHHHHHHHhhccCceeeecCCCccccccccchh
Confidence            999999999999998776665555444   3334333332211  1 1122222222 12 3444556677788899999


Q ss_pred             hHHHHhhCC-CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCCccccccccCCCc
Q 020236          167 SLEFLEQVP-LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETNTVADGLRAFLGD  245 (329)
Q Consensus       167 ~~Ei~~ql~-~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~t~~~gl~~~~~~  245 (329)
                      +.|+.+|.+ .||+||+|+|+|+++.|+..+++...+.+++++|++............+..      .+..+...  .+.
T Consensus       171 ~~e~~~~~~~~~d~vv~~~G~G~~~~gi~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~  242 (325)
T d1j0aa_         171 VGEIATQSEVKFDSIVVAAGSGGTLAGLSLGLSILNEDIRPVGIAVGRFGEVMTSKLDNLI------KEAAELLG--VKV  242 (325)
T ss_dssp             HHHHHHHCCCCCSEEEEEESSSHHHHHHHHHHHHTTCCCEEEEEECSSCSSSHHHHHHHHH------HHHHHHTT--CCC
T ss_pred             hcccccccccccceeecccccchhhhhHHHHHHhhCccccccccccccchhhhhhhhcccc------cccccccC--CCc
Confidence            999999987 799999999999999999999999999999999999887655443322110      00111111  222


Q ss_pred             ccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeEEEEeCCCCCChHHHH
Q 020236          246 LTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGGNVDLGVLW  324 (329)
Q Consensus       246 ~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg~~~~~~~~  324 (329)
                      ..+....++.+..+.|+|+|+++++++|+++|||++||. ||+++++++++  .+++.  .+++||+|||||...+.-|.
T Consensus       243 ~~~~~~~~~~~~~~~v~d~e~~~a~~~l~~~eGI~~eP~~s~~a~~~l~~~--~~~~~--~~~~vv~i~tGGl~g~~~~~  318 (325)
T d1j0aa_         243 EVRPELYDYSFGEYGKITGEVAQIIRKVGTREGIILDPVYTGKAFYGLVDL--ARKGE--LGEKILFIHTGGISGTFHYG  318 (325)
T ss_dssp             CSCCEEEECSTTSTTCCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHH--HHTTC--SCSEEEEEECCCHHHHHHTH
T ss_pred             ccchhhhhceecceeechHHHHHHHHHHHHHcCCcCChhhHHHHHHHHHHH--HHcCC--CCCeEEEEECCchHHHHHHH
Confidence            223333467788999999999999999999999999994 99999999987  55554  47899999999965554444


Q ss_pred             H
Q 020236          325 D  325 (329)
Q Consensus       325 ~  325 (329)
                      +
T Consensus       319 ~  319 (325)
T d1j0aa_         319 D  319 (325)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1tyza_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Pseudomonas sp., strain ACP [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Pseudomonas sp., strain ACP [TaxId: 306]

Probab=100.00  E-value=4.4e-44  Score=326.13  Aligned_cols=302  Identities=14%  Similarity=0.126  Sum_probs=227.8

Q ss_pred             HHhccccCCCCCccchhhhhhcC--CeEEEEecCCCCCCcc---chhhHHHHHhcCchhccCCeE--EEECCchHHHHHH
Q 020236           20 KRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKGGAF---KFRGASNAVLSLDEDQAIKGV--VTHSSGNHAAALS   92 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~---KdR~a~~~l~~a~~~~~~~~v--v~~ssGN~g~a~A   92 (329)
                      +|+...+++|||+++++|++.+|  .+||+|+|++||||||   |||++.+++.+++++ +.+.+  +++|+||||.|+|
T Consensus         7 ~r~~l~~g~TPL~~~~~L~~~lg~~~~i~~K~E~~~ptgS~~gnK~R~~~~~i~~a~~~-g~~~v~~~~~s~gN~g~A~A   85 (338)
T d1tyza_           7 PRYPLTFGPTPIQPLARLSKHLGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIPEALAQ-GCDTLVSIGGIQSNQTRQVA   85 (338)
T ss_dssp             CCCCCSSSSCCEEECHHHHHHTTSSSEEEEEEGGGSCSSTTCCHHHHHHHHHHHHHHHT-TCCEEEEEEETTCHHHHHHH
T ss_pred             CccccCCCCCceeEhHHHHHHHCCCCEEEEEECCCCCCcccccCHHHHHHHHHHHHHHC-CCCeEEEEccCCchHHHHHH
Confidence            34677889999999999999888  5899999999999999   999999999988655 44444  3579999999999


Q ss_pred             HHHHHcCCCEEEEEcCCCCH--------HHHHHHHHcCCEEEEECCCHHHH-----HHHHHHHHHHc-CCEeeCCCCCcc
Q 020236           93 LAAKLRGIPAYIVIPKNAPK--------CKVENVVRYGGQVIWSEATMHSR-----ESVASKVLEET-GAVLVHPYNDGR  158 (329)
Q Consensus        93 ~~a~~~G~~~~i~~p~~~~~--------~~~~~~~~~Ga~v~~~~~~~~~~-----~~~a~~~~~~~-~~~~~~~~~n~~  158 (329)
                      ++|+.+|++|++++|+..+.        .+.+.++.+|+.++.++...+..     .+......... +.++..++.++.
T Consensus        86 ~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (338)
T d1tyza_          86 AVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQMSRILGADVRLVPDGFDIGFRRSWEDALESVRAAGGKPYAIPAGCSDH  165 (338)
T ss_dssp             HHHHHHTCEEEEEEECCSSCCCTTTTTSHHHHHHHHTTCEEECCCC-------CHHHHHHHHHHHTTCCEEEECGGGTSS
T ss_pred             HHHhhccCcEEEEECCCcchhhhhhhhccccceeeeeccccccccCCcchhHHHHHHHHHhhhhhcccceeeecccCccC
Confidence            99999999999999986543        45678889999999998754432     22222233333 444444444555


Q ss_pred             cccccCcchHHHHhhC------CCCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCC
Q 020236          159 IISGQGTISLEFLEQV------PLLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLET  232 (329)
Q Consensus       159 ~~~g~~t~~~Ei~~ql------~~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~  232 (329)
                      ...+..+.+.|...|.      ..||++|+|+|+|++++|++.+|+...+.++++++++..++...........     .
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~d~iv~~~G~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~  240 (338)
T d1tyza_         166 PLGGLGFVGFAEEVRAQEAELGFKFDYVVVCSVTGSTQAGMVVGFAADGRADRVIGVDASAKPAQTREQITRIA-----R  240 (338)
T ss_dssp             TTTTTHHHHHHHHHHHHHHHHTSCCSEEEEEESSSHHHHHHHHHHHTTTCGGGEEEEECSSCHHHHHHHHHHHH-----H
T ss_pred             ccccccccchHHHHHHHHHhcCCCccEEEEeecChhHHHHHHHHHHHHhhhhcccceeeccchhhhcccccccc-----c
Confidence            5666666665544332      2699999999999999999999999999999999999887654433221111     0


Q ss_pred             Ccccccccc-CCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCeEE
Q 020236          233 NTVADGLRA-FLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKKIG  310 (329)
Q Consensus       233 ~t~~~gl~~-~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~vv  310 (329)
                      .+....... ......+....++.++.+.|+|+|+++++++|+++|||++||. ||+++++++++  .+++.+.++++||
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~ei~~a~~~l~~~eGI~~eP~~s~~a~a~l~~~--~~~~~~~~g~~Vv  318 (338)
T d1tyza_         241 QTAEKVGLERDIMRADVVLDERFAGPEYGLPNEGTLEAIRLCARTEGMLTDPVYEGKSMHGMIEM--VRNGEFPEGSRVL  318 (338)
T ss_dssp             HHHHHHTCSSCCCGGGCEEECTTSCSBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHH--HHTTCSCTTCEEE
T ss_pred             cccccccccCcccchhhhhhhhcccceEEEChHHHHHHHHHHHHHhCCcCChHHHHHHHHHHHHH--HhcCCCCCcCeEE
Confidence            011111111 1233444455678899999999999999999999999999997 78999999887  6777788999999


Q ss_pred             EEeCCCCCChHHHHHhhhC
Q 020236          311 IVLSGGNVDLGVLWDSFRK  329 (329)
Q Consensus       311 ~v~tgg~~~~~~~~~~~~~  329 (329)
                      ++||||..++.-|.+++++
T Consensus       319 ~i~TGG~~~~~~y~~~~~~  337 (338)
T d1tyza_         319 YAHLGGVPALNGYSFIFRD  337 (338)
T ss_dssp             EEECCCGGGGGGGTGGGTT
T ss_pred             EEECCchhhHHHHHHHHhc
Confidence            9999998888888777654

>d1f2da_ c.79.1.1 (A:) 1-aminocyclopropane-1-carboxylate deaminase {Yeast (Hansenula saturnus) [TaxId: 4906]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: 1-aminocyclopropane-1-carboxylate deaminase
species: Yeast (Hansenula saturnus) [TaxId: 4906]

Probab=100.00  E-value=5e-44  Score=326.71  Aligned_cols=300  Identities=15%  Similarity=0.132  Sum_probs=230.1

Q ss_pred             HHhccccCCCCCccchhhhhhcC--CeEEEEecCCCCCCcc---chhhHHHHHhcCchhccCCeE--EEECCchHHHHHH
Q 020236           20 KRISLYIHKTPVLSSETLNSMSG--RSLFFKCECFQKGGAF---KFRGASNAVLSLDEDQAIKGV--VTHSSGNHAAALS   92 (329)
Q Consensus        20 ~~~~~~i~~TPl~~~~~l~~~~g--~~i~~K~E~~nptGS~---KdR~a~~~l~~a~~~~~~~~v--v~~ssGN~g~a~A   92 (329)
                      +++....++|||+++++|++.+|  .+||+|+|++||+|||   |+|++.+++.++.++ +.+.+  +++|+||||.|+|
T Consensus         7 ~~~~l~~~~TPl~~~~~L~~~lg~~~~i~~K~E~~~p~GSf~gnK~R~~~~~i~~a~~~-g~~~i~~~~as~gN~g~a~A   85 (341)
T d1f2da_           7 AKYPLTFGPSPISNLNRLSQHLGSKVNVYAKREDCNSGLAFGGNKLRKLEYIVPDIVEG-DYTHLVSIGGRQSNQTRMVA   85 (341)
T ss_dssp             CCCCCSSSSCCEEECHHHHHHTTTCSEEEEEEGGGSCSSTTCCHHHHHHTTTHHHHHHS-CCSEEEEEEETTCHHHHHHH
T ss_pred             cCccCCCCCCceeEHHHHHHHHCCCCEEEEEECCCCCCCccccChHHHHHHHHHHHHHC-CCCEEEEEccCcchHHHHHH
Confidence            34566789999999999999998  4899999999999999   999999999887554 44444  4578999999999


Q ss_pred             HHHHHcCCCEEEEEcCCCCHH-----------HHHHHHHcCCEEEEECCCHH-----HHHHHHHHHHHHcC-CEeeCC--
Q 020236           93 LAAKLRGIPAYIVIPKNAPKC-----------KVENVVRYGGQVIWSEATMH-----SRESVASKVLEETG-AVLVHP--  153 (329)
Q Consensus        93 ~~a~~~G~~~~i~~p~~~~~~-----------~~~~~~~~Ga~v~~~~~~~~-----~~~~~a~~~~~~~~-~~~~~~--  153 (329)
                      ++|+.+|++|++++|+..+..           +...++.+|+++..++...+     .............. .++...  
T Consensus        86 ~~a~~~g~~~~i~~p~~~~~~k~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (341)
T d1f2da_          86 ALAAKLGKKCVLIQEDWVPIPEAEKDVYNRVGNIELSRIMGADVRVIEDGFDIGMRKSFANALQELEDAGHKPYPIPAGC  165 (341)
T ss_dssp             HHHHHHTCEEEEEEECCSCCCGGGTTTTTTSHHHHHHHHTTCEEEECCCCCCSSCCHHHHHHHHHHHHTTCCEEEECGGG
T ss_pred             HHHHHhcCceEEEccCCCCHHHHHHHHHhhccceechhhccccccccCCchhhHHHHHHHHHHHHHHhhccCccccCCcc
Confidence            999999999999999886643           45677889999999986432     22222333333333 333222  


Q ss_pred             CCCcccccccCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeec
Q 020236          154 YNDGRIISGQGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITL  229 (329)
Q Consensus       154 ~~n~~~~~g~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~  229 (329)
                      .+++....++.+.+.++.+|+.    .||++|+|+|+|++++|+..+++...+.++++++.+............+.... 
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~G~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  244 (341)
T d1f2da_         166 SEHKYGGLGFVGFADEVINQEVELGIKFDKIVVCCVTGSTTAGILAGMAQYGRQDDVIAIDASFTSEKTKEQTLRIANN-  244 (341)
T ss_dssp             TTSTTTTTHHHHHHHHHHHHHHHHTCCCSEEEEEESSSHHHHHHHHHHGGGTCGGGEEEEECSSCHHHHHHHHHHHHHH-
T ss_pred             cccccchhhehhhhHHHHHHHhhccCCceEEEEecccccchhhHHHHHHHhcccccccccccccchhhhhhhhhccccc-
Confidence            3356667777777777777653    69999999999999999999999999999999999988764433322111100 


Q ss_pred             CCCCccccccccCCCcccHHHHhhcCCcEEEeCHHHHHHHHHHHHHHcCceeCcc-hHHHHHHHhccccccCCCCCCCCe
Q 020236          230 LETNTVADGLRAFLGDLTWPIVRDLVDDVITVEDKEIIEAMKLCYEILKVAVEPS-GAIGLAAVLSDGFRKNPAWQDSKK  308 (329)
Q Consensus       230 ~~~~t~~~gl~~~~~~~~~~~~~~~~~~~~~V~d~e~~~a~~~l~~~egi~~~ps-sa~alaa~~~~~~~~~~~~~~~~~  308 (329)
                           ....+....+...+.+..++.+..+.|+|+|+++++++|+++|||++||+ ||++++++.++  .+++.+.++++
T Consensus       245 -----~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~e~~~a~~~la~~eGI~veP~ys~~a~agl~~l--~~~~~i~~~~~  317 (341)
T d1f2da_         245 -----TAKLIGVEHEFKDFTLDTRFAYPCYGVPNEGTIEAIRTCAEQEGVLTDPVYEGKSMQGLIAL--IKEDYFKPGAN  317 (341)
T ss_dssp             -----HHHHHTCCCCCSCCCEECTTSTTBTTBCCHHHHHHHHHHHHHHSCCCCTTTHHHHHHHHHHH--HHTTCSCTTCE
T ss_pred             -----cccccccCCCccccccccccceeEEEEChHHHHHHHHHHHHHhCcccChhhhHHHHHHHHHH--HHcCCCCCcCe
Confidence                 00011111223334444677888999999999999999999999999998 89999999887  67777888999


Q ss_pred             EEEEeCCCCCChHHHHHhhh
Q 020236          309 IGIVLSGGNVDLGVLWDSFR  328 (329)
Q Consensus       309 vv~v~tgg~~~~~~~~~~~~  328 (329)
                      ||+|||||..++..|.+.++
T Consensus       318 Vv~i~TGG~~~~~~~~~~~~  337 (341)
T d1f2da_         318 VLYVHLGGAPALSAYSSFFP  337 (341)
T ss_dssp             EEEEECCCGGGGGGGGGGCC
T ss_pred             EEEEECCCcccHHHHHHHhc
Confidence            99999999999999888765

>d1vb3a1 c.79.1.1 (A:1-428) Threonine synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.8e-32  Score=253.65  Aligned_cols=301  Identities=14%  Similarity=0.086  Sum_probs=235.2

Q ss_pred             CCHHHHHHHHHHhccccCCCCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcCc--hhccCCeEEEECCchH
Q 020236           10 ANFSSIKEAQKRISLYIHKTPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSLD--EDQAIKGVVTHSSGNH   87 (329)
Q Consensus        10 ~~~~~~~~~~~~~~~~i~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a~--~~~~~~~vv~~ssGN~   87 (329)
                      ++.+++.+...+.+.+  ..|+.++.       .++|+...+++||+|||||++..+...+.  .+.+...|+++||||+
T Consensus        67 ~~~~~l~~~~~~~~~~--~~p~~~~~-------~~~~~lELfhGPT~aFKD~a~~~~~~~~~~~~~~~~~~Il~ATSGDT  137 (428)
T d1vb3a1          67 IPQEILEERVRAAFAF--PAPVANVE-------SDVGCLELFHGPTLAFKDFGGRFMAQMLTHIAGDKPVTILTATSGDT  137 (428)
T ss_dssp             SCHHHHHHHHHHHCCS--CCCEEEEE-------TTEEEEECCCSTTSBTHHHHHHHHHHHHHHHTTTCCEEEEEECSSSH
T ss_pred             CCHHHHHHHHHHHhcC--Cccceecc-------CCceeeeeccCCCcccccchhhHHHHHHhhhcccccceeeecCCCCc
Confidence            6667777776666554  45666543       37999999999999999999877544322  1234567999999999


Q ss_pred             HHHHHHHHHHc-CCCEEEEEcCC-CCHHHHHHHHHcCCEE--EEECCCHHHHHHHHHHHHHH------cCCEeeCCCCCc
Q 020236           88 AAALSLAAKLR-GIPAYIVIPKN-APKCKVENVVRYGGQV--IWSEATMHSRESVASKVLEE------TGAVLVHPYNDG  157 (329)
Q Consensus        88 g~a~A~~a~~~-G~~~~i~~p~~-~~~~~~~~~~~~Ga~v--~~~~~~~~~~~~~a~~~~~~------~~~~~~~~~~n~  157 (329)
                      |.|++.+.+.. +++++++.|++ +++.|+++|..+|+.|  +.++|++|+|++.++++..+      .+..-+|+ -|+
T Consensus       138 G~Aa~~a~~~~~~i~~~vl~P~g~vS~~Q~~Qmtt~g~nv~vi~V~G~fDDcq~lvk~~f~d~~~~~~~~l~s~NS-IN~  216 (428)
T d1vb3a1         138 GAAVAHAFYGLPNVKVVILYPRGKISPLQEKLFCTLGGNIETVAIDGDFDACQALVKQAFDDEELKVALGLNSANS-INI  216 (428)
T ss_dssp             HHHHHHHTTTCTTEEEEEEEETTCSCHHHHHHHHSCCTTEEEEEEESCHHHHHHHHHHGGGCHHHHHHHTEECCST-TSH
T ss_pred             chhHHHHHhCccccceEEEecCCCCcHHHHHHHhhccCCceEEecCCChhHHHHHHHHHhhhhhhhhcCCeeeecc-cCh
Confidence            99998886655 68999999976 8999999999999975  56889999999999987643      23333454 578


Q ss_pred             ccccccCcchHHHHhhCC----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHHHHHHcCCeeecCCCC
Q 020236          158 RIISGQGTISLEFLEQVP----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAAQSKAAGRIITLLETN  233 (329)
Q Consensus       158 ~~~~g~~t~~~Ei~~ql~----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~~~~~~g~~~~~~~~~  233 (329)
                      .+++++.+.++|++.|+.    .++.|+||+|++|++.|.+.+.++..|.-+++..+..+ +.+.+.+..|...+.+...
T Consensus       217 ~Rl~~Q~vyyf~a~~ql~~~~~~~~~~~VPtGNfGni~Ag~~Ak~mGLPi~~~i~AtN~N-dil~~f~~tG~y~~~~~~~  295 (428)
T d1vb3a1         217 SRLLAQICYYFEAVAQLPQETRNQLVVSVPSGNFGDLTAGLLAKSLGLPVKRFIAATNVN-DTVPRFLHDGQWSPKATQA  295 (428)
T ss_dssp             HHHHHTTHHHHHHHTTSCTTTTTSEEEEEECSSCHHHHHHHHHHHTTCCCSEEEEEECSC-CHHHHHHHHSCCCCCCCCC
T ss_pred             hHHhhhHHHHHHHHHHhccccCCceEEeccHHHHHHHHHHHHhhhcCCceeeeecccccC-ccchhhhhCCceecccccc
Confidence            899999999999999986    47899999999999999998888777878888777665 5688899999888888889


Q ss_pred             ccccccccCCCcccHHHHh-------hcCCcEEEeCHHHHHHHHHHHHHHcCceeCcchHHHHHHHhccccccCCCCCCC
Q 020236          234 TVADGLRAFLGDLTWPIVR-------DLVDDVITVEDKEIIEAMKLCYEILKVAVEPSGAIGLAAVLSDGFRKNPAWQDS  306 (329)
Q Consensus       234 t~~~gl~~~~~~~~~~~~~-------~~~~~~~~V~d~e~~~a~~~l~~~egi~~~pssa~alaa~~~~~~~~~~~~~~~  306 (329)
                      |++++|+++.+.++.++.+       +.......+.|+|....+++.++++|+++||+||++++++.+.  .     .++
T Consensus       296 TlSpAMDI~~pSNfERl~~l~~~~~~~l~~~~~~~~dde~~~~i~~~~~~~gyi~DPHTAvg~~a~~~~--~-----~~~  368 (428)
T d1vb3a1         296 TLSNAMDVSQPNNWPRVEELFRRKIWQLKELGYAAVDDETTQQTMRELKELGYTSEPHAAVAYRALRDQ--L-----NPG  368 (428)
T ss_dssp             CSSGGGCCSSCTTHHHHHHHHHHTTCCGGGSEEEECCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTT--C-----CTT
T ss_pred             cCchHhhhcccCCHHHHHHHHHhhhhhhcccceeeccHHHHHHHHHHHHHcCceeCCcHHHHHHHHHHh--h-----CCC
Confidence            9999999876655554432       1223466777777778888888899999999999999998764  2     255


Q ss_pred             CeEEEEeCC-CCCChHHHHHhhh
Q 020236          307 KKIGIVLSG-GNVDLGVLWDSFR  328 (329)
Q Consensus       307 ~~vv~v~tg-g~~~~~~~~~~~~  328 (329)
                      ...|++-|. ..+-.+.+.++++
T Consensus       369 ~~~V~LaTAHP~KF~d~V~~aig  391 (428)
T d1vb3a1         369 EYGLFLGTAHPAKFKESVEAILG  391 (428)
T ss_dssp             CEEEEEECBCGGGGHHHHHHHHT
T ss_pred             CCEEEEECcCchhCHHHHHHHhC
Confidence            677888887 4677777777654

>d1kl7a_ c.79.1.1 (A:) Threonine synthase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Tryptophan synthase beta subunit-like PLP-dependent enzymes
superfamily: Tryptophan synthase beta subunit-like PLP-dependent enzymes
family: Tryptophan synthase beta subunit-like PLP-dependent enzymes
domain: Threonine synthase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.8e-23  Score=197.08  Aligned_cols=313  Identities=15%  Similarity=0.067  Sum_probs=230.4

Q ss_pred             CCCHHHHHHHHHHhccccCC---CCCccchhhhhhcCCeEEEEecCCCCCCccchhhHHHHHhcC---chh---------
Q 020236            9 AANFSSIKEAQKRISLYIHK---TPVLSSETLNSMSGRSLFFKCECFQKGGAFKFRGASNAVLSL---DED---------   73 (329)
Q Consensus         9 ~~~~~~~~~~~~~~~~~i~~---TPl~~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~l~~a---~~~---------   73 (329)
                      .++.+++.++..+.+..+..   +||.++   ......++|+-.-++.||.+|||.++..+...+   .++         
T Consensus        73 ~i~~~~l~~ii~~ay~~F~~~~v~pl~~~---~~~~~~~~~vlELfhGPT~aFKD~a~~~l~~~~~~~l~~~~~~~~~~~  149 (511)
T d1kl7a_          73 EIPDADLKDLIKRSYSTFRSDEVTPLVQN---VTGDKENLHILELFHGPTYAFKDVALQFVGNLFEYFLQRTNANLPEGE  149 (511)
T ss_dssp             TSCHHHHHHHHHHHTTTCSSTTSSCEECC---TTCSSSCEEEEECCCSTTSBTHHHHHHHHHHHHHHHHHHHHTTSCSSS
T ss_pred             cCCHHHHHHHHHHHhcCCCCcccCccccc---ccCCCCceEEEeeccCCcccccCcchhhHHHHHHHHHHhccccccccc
Confidence            46777788777766544332   555554   222345899999999999999999986554322   111         


Q ss_pred             ccCCeEEEECCchHHHHHHHHHH-HcCCCEEEEEcCC-CCHHHHHHHHHcCC---EEEEECCCHHHHHHHHHHHHHHcC-
Q 020236           74 QAIKGVVTHSSGNHAAALSLAAK-LRGIPAYIVIPKN-APKCKVENVVRYGG---QVIWSEATMHSRESVASKVLEETG-  147 (329)
Q Consensus        74 ~~~~~vv~~ssGN~g~a~A~~a~-~~G~~~~i~~p~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~a~~~~~~~~-  147 (329)
                      .+.-.|+++|||.+|.|.+.+.+ ..+++++|+.|.+ +|+.++++|...++   .++.++|++|+|+..++++-.+.. 
T Consensus       150 ~~~~~il~aTSGDTG~Aa~~af~~~~~i~v~vlyP~~~vS~iQ~~Qmtt~~~~Nv~~i~v~G~fDDcq~~vk~~f~d~~~  229 (511)
T d1kl7a_         150 KKQITVVGATSGDTGSAAIYGLRGKKDVSVFILYPTGRISPIQEEQMTTVPDENVQTLSVTGTFDNCQDIVKAIFGDKEF  229 (511)
T ss_dssp             CCCEEEEEECSSSHHHHHHHHHTTCTTEEEEEEEETTSSCHHHHHHHHHCCCTTEEEEEESSCHHHHHHHHHHHHHCSSC
T ss_pred             CceEEEEEecCCCccHHHHHHhcCCCCceeEEeccCCCCchHHHHHHhhcCCceEEEEEeccChHHHHHHHHHHHhhhhh
Confidence            13346999999999999888865 6789999999987 89999999998755   356889999999999999876632 


Q ss_pred             --CEeeCCC--CCcccccccCcchHHHHhhCC-----CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEecCCCchHH
Q 020236          148 --AVLVHPY--NDGRIISGQGTISLEFLEQVP-----LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAEPIGANDAA  218 (329)
Q Consensus       148 --~~~~~~~--~n~~~~~g~~t~~~Ei~~ql~-----~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~~~~~~~~~  218 (329)
                        .+.+...  -|+.++..|...++..+-|+.     ++=.|+||+|+.|.+.+.+.+.++..|--|+|.....+. .++
T Consensus       230 ~~~~~l~s~NSiNw~Rll~QivyYf~ay~q~~~~~~~~~v~f~VPTGNfGni~Ag~~Ak~MGLPI~klivAtN~Nd-iL~  308 (511)
T d1kl7a_         230 NSKHNVGAVNSINWARILAQMTYYFYSFFQATNGKDSKKVKFVVPSGNFGDILAGYFAKKMGLPIEKLAIATNEND-ILD  308 (511)
T ss_dssp             C--CCBCCCCSCCHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEECSSSHHHHHHHHHHHHTCCCCCEEEEECSCC-HHH
T ss_pred             hcccccccccceeehhhhhhHHHHHHHHHHHhhhccCCeeEEEeccCcHHHHHHHHHHHhcCCChheEEEecCCcc-hHH
Confidence              2223332  355577777777777666642     345799999999999988877776667779999988876 699


Q ss_pred             HHHHcCCeeecC-CCCccccccccCCCcccHHHHhhcC------------------------------------------
Q 020236          219 QSKAAGRIITLL-ETNTVADGLRAFLGDLTWPIVRDLV------------------------------------------  255 (329)
Q Consensus       219 ~~~~~g~~~~~~-~~~t~~~gl~~~~~~~~~~~~~~~~------------------------------------------  255 (329)
                      +.+..|.....+ ...|+++.|++.++.++.+++..+.                                          
T Consensus       309 rf~~tG~y~~~~~v~~T~SPSMDI~vsSNfERLL~~l~~~~~~~gd~~~~~~~v~~~M~~f~~~G~~~l~~~~l~~l~~~  388 (511)
T d1kl7a_         309 RFLKSGLYERSDKVAATLSPAMDILISSNFERLLWYLAREYLANGDDLKAGEIVNNWFQELKTNGKFQVDKSIIEGASKD  388 (511)
T ss_dssp             HHHHHSEEECCSSCCCCSCGGGCCSSCTTHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHSEEECCHHHHHHHTTT
T ss_pred             HHhcCCCCCCcCcccCcCccHHhhhhhHHHHHHHHHHhcchhcccchhhhHHHHHHHHHHHHhcCCccccchhhhccccc
Confidence            999999876454 4579999999988777777764321                                          


Q ss_pred             CcEEEeCHHHHHHHHHHHHHHc----CceeCcchHHHHHHHhccccccCCCCCCCCeEEEEeCCC-CCChHHHHHhhh
Q 020236          256 DDVITVEDKEIIEAMKLCYEIL----KVAVEPSGAIGLAAVLSDGFRKNPAWQDSKKIGIVLSGG-NVDLGVLWDSFR  328 (329)
Q Consensus       256 ~~~~~V~d~e~~~a~~~l~~~e----gi~~~pssa~alaa~~~~~~~~~~~~~~~~~vv~v~tgg-~~~~~~~~~~~~  328 (329)
                      .....++|+|+.+++++++++.    |+++||+||+++.|+.++  ..+.. .++...|++-|-. .+=.+.+.++++
T Consensus       389 F~s~svsD~et~~tIk~vye~~~n~~gYllDPHTAVG~~aa~k~--~~~~~-~~~~p~VvLATAHPaKFpdaV~~Alg  463 (511)
T d1kl7a_         389 FTSERVSNEETSETIKKIYESSVNPKHYILDPHTAVGVCATERL--IAKDN-DKSIQYISLSTAHPAKFADAVNNALS  463 (511)
T ss_dssp             EEEEECCHHHHHHHHHHHHHHCCSSTTCCCCHHHHHHHHHHHHH--HHHHC-CTTSEEEEEECBCGGGGHHHHHHHHT
T ss_pred             eeEEEeCHHHHHHHHHHHHHhcCccCCeEECCcHHHHHHHHHHH--HHhcc-CCCCcEEEEeCcChhhhHHHHHHHhC
Confidence            2477899999999999999987    999999999999999876  22111 1334567777754 455666666553

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=92.65  E-value=0.22  Score=37.79  Aligned_cols=64  Identities=11%  Similarity=0.077  Sum_probs=45.4

Q ss_pred             HHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236           63 ASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA  130 (329)
Q Consensus        63 a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~  130 (329)
                      +++.+..+.- ...+.|+...+|.-|...+..++.+|.+++++-   .++.|++..+.+||+.+....
T Consensus        16 a~~al~~~~~-~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~---~~~~~~~~a~~~Ga~~~i~~~   79 (166)
T d1llua2          16 VYKGLKQTNA-RPGQWVAISGIGGLGHVAVQYARAMGLHVAAID---IDDAKLELARKLGASLTVNAR   79 (166)
T ss_dssp             HHHHHHHHTC-CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHHHHhCC-CCCCEEEEeeccccHHHHHHHHHHcCCccceec---chhhHHHhhhccCcccccccc
Confidence            4455544322 234556667789999999999999998766553   457888999999998665433

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=91.36  E-value=0.2  Score=33.08  Aligned_cols=46  Identities=20%  Similarity=0.092  Sum_probs=37.0

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCC
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGG  123 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga  123 (329)
                      +.+.+|...+|.-|......++.+|.+++.+..   +++|.+.++.+||
T Consensus        32 ~~~vlI~gasGgVG~~aiQlak~~G~~Vi~~t~---s~~k~~~~~~lGA   77 (77)
T d1o8ca2          32 DGEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGA   77 (77)
T ss_dssp             GCEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTE
T ss_pred             CCcEEEEeCCCcHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHCCC
Confidence            344567678899999999999999999888764   4567888888886

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=91.22  E-value=0.24  Score=38.22  Aligned_cols=67  Identities=15%  Similarity=0.114  Sum_probs=49.9

Q ss_pred             hhHHHHHhcCch-hccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236           61 RGASNAVLSLDE-DQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA  130 (329)
Q Consensus        61 R~a~~~l~~a~~-~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~  130 (329)
                      ..|++.+.+..+ +.+...+|.+.+|.-|.++...|+..|.+++.+..   ++.+.+.++.+|++.+....
T Consensus        15 lTA~~al~~~~~v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~---~~~~~~~~~~~Ga~~vi~~~   82 (182)
T d1v3va2          15 LTAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKIAYLKQIGFDAAFNYK   82 (182)
T ss_dssp             HHHHHHHHTTTCCCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHHHHHHHhCCCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCC---CHHHHHHHHhhhhhhhcccc
Confidence            456666654423 22334466678899999999999999998887763   46789999999999876654

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=91.10  E-value=1.1  Score=34.17  Aligned_cols=66  Identities=21%  Similarity=0.160  Sum_probs=44.3

Q ss_pred             HHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236           63 ASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA  130 (329)
Q Consensus        63 a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~  130 (329)
                      ++..+.+..+-.....|+...+|..|......++.+|.+-++++.  .++.+++..+.+||+.+....
T Consensus        16 a~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~--~~~~~~~~a~~lGa~~vi~~~   81 (182)
T d1vj0a2          16 AYHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIA--GSPNRLKLAEEIGADLTLNRR   81 (182)
T ss_dssp             HHHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEE--SCHHHHHHHHHTTCSEEEETT
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCccchhheecccccccccccccc--cccccccccccccceEEEecc
Confidence            444444332222345666667799999999999999986444442  257788999999997665443

>d1vp8a_ c.49.1.2 (A:) Hypothetical protein AF0103 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: Pyruvate kinase C-terminal domain-like
superfamily: PK C-terminal domain-like
family: MTH1675-like
domain: Hypothetical protein AF0103
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=91.03  E-value=0.33  Score=37.29  Aligned_cols=75  Identities=20%  Similarity=0.203  Sum_probs=54.9

Q ss_pred             CCCCccchhhHHHHHhcCchhccCCeEEE-ECCchHHHHHHHHHHHcCCCEEEEEcC---------CCCHHHHHHHHHcC
Q 020236           53 QKGGAFKFRGASNAVLSLDEDQAIKGVVT-HSSGNHAAALSLAAKLRGIPAYIVIPK---------NAPKCKVENVVRYG  122 (329)
Q Consensus        53 nptGS~KdR~a~~~l~~a~~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~i~~p~---------~~~~~~~~~~~~~G  122 (329)
                      +|+-.+-+..+...+.++ ++.+.+.||. +|+|.++..++-+.  .|+++++|...         ..+++.++.++..|
T Consensus        11 ~~G~~NT~~~l~~a~~rA-~Elgi~~iVvAStsG~TA~~~~e~~--~g~~lvvVth~~GF~~pg~~e~~~e~~~~L~~~G   87 (190)
T d1vp8a_          11 KPGRENTEETLRLAVERA-KELGIKHLVVASSYGDTAMKALEMA--EGLEVVVVTYHTGFVREGENTMPPEVEEELRKRG   87 (190)
T ss_dssp             SCSGGGHHHHHHHHHHHH-HHHTCCEEEEECSSSHHHHHHHHHC--TTCEEEEEECCTTSSSTTCCSSCHHHHHHHHHTT
T ss_pred             CCCcccHHHHHHHHHHHH-HHcCCCeEEEEeCCcHHHHHHHHHh--cCCeEEEEecccCCCCCCcccCCHHHHHHHHHcC
Confidence            466667777788888877 4445556555 46799998777765  38888887732         25789999999999


Q ss_pred             CEEEEECC
Q 020236          123 GQVIWSEA  130 (329)
Q Consensus       123 a~v~~~~~  130 (329)
                      .+|+.-..
T Consensus        88 ~~V~t~tH   95 (190)
T d1vp8a_          88 AKIVRQSH   95 (190)
T ss_dssp             CEEEECCC
T ss_pred             CEEEEecc
Confidence            99986544

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.54  E-value=0.7  Score=35.17  Aligned_cols=51  Identities=22%  Similarity=0.261  Sum_probs=40.6

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW  127 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~  127 (329)
                      ..+.|+....|--|...+..++.+|.+.+++...  ++.|++..+.+|++-+.
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~--~~~k~~~a~~~Ga~~~i   78 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDI--VESRLELAKQLGATHVI   78 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEES--CHHHHHHHHHHTCSEEE
T ss_pred             CCCEEEEeCCCHHHhhhhhcccccccceeeeecc--HHHHHHHHHHcCCeEEE
Confidence            4456666778999999999999999998877743  47888999999986443

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=90.32  E-value=0.37  Score=36.86  Aligned_cols=63  Identities=11%  Similarity=0.016  Sum_probs=43.6

Q ss_pred             HHHHHhcCchhccCCe-EEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 020236           63 ASNAVLSLDEDQAIKG-VVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS  128 (329)
Q Consensus        63 a~~~l~~a~~~~~~~~-vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~  128 (329)
                      |+..+.+..+-...++ +|...+|..|..+...|+..|.++++...   ++.|++.++.+||+.+.-
T Consensus        16 A~~al~~~~~l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~---s~~k~~~~~~lGa~~vi~   79 (179)
T d1qora2          16 VYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---TAQKAQSALKAGAWQVIN   79 (179)
T ss_dssp             HHHHHHTTSCCCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHhCCCCCCEEEEEccccccchHHHHHHHHhCCeEeeccc---chHHHHHHHhcCCeEEEE
Confidence            4445543322112345 55568888999999999999998777653   577888899999886653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.07  E-value=0.53  Score=35.58  Aligned_cols=64  Identities=19%  Similarity=0.119  Sum_probs=45.0

Q ss_pred             HHHHHhcCchhccCCeEEEEC-CchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236           63 ASNAVLSLDEDQAIKGVVTHS-SGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE  129 (329)
Q Consensus        63 a~~~l~~a~~~~~~~~vv~~s-sGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~  129 (329)
                      ++..+..+..+ ..+.|+... +|..|..++..++..|...+++...  ++.|++.++.+|++.+.-.
T Consensus        16 a~~al~~~~~~-~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~--~~~~~~~~~~~Ga~~~i~~   80 (170)
T d1jvba2          16 TYRAVRKASLD-PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDV--REEAVEAAKRAGADYVINA   80 (170)
T ss_dssp             HHHHHHHTTCC-TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEES--SHHHHHHHHHHTCSEEEET
T ss_pred             HHHHHHHhCCC-CCCEEEEEeccccceeeeeeccccccccccccccc--chhhHHHHHHcCCceeecc
Confidence            55566554222 334555555 7999999999999999877766654  3778999999999765443

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=88.85  E-value=0.88  Score=34.24  Aligned_cols=50  Identities=20%  Similarity=0.116  Sum_probs=39.5

Q ss_pred             CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS  128 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~  128 (329)
                      .+.|+...+|.-|...+..++.+|.+++++-   .++.|++..+.+|++....
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~---~~~~r~~~a~~~ga~~~~~   76 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAYGAFVVCTA---RSPRRLEVAKNCGADVTLV   76 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEE---SCHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEEEcccccchhhHhhHhhhcccccccc---hHHHHHHHHHHcCCcEEEe
Confidence            3455666789999999999999998766653   3578899999999986654

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.30  E-value=0.32  Score=37.20  Aligned_cols=61  Identities=15%  Similarity=0.092  Sum_probs=43.0

Q ss_pred             HHHHHhcCchhccCCeEEE-ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236           63 ASNAVLSLDEDQAIKGVVT-HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW  127 (329)
Q Consensus        63 a~~~l~~a~~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~  127 (329)
                      +++.+..+.- ...+.|+. ..+|.-|.+....|+.+|.+++++..   ++.+++.++.+|++.+.
T Consensus        16 A~~al~~~~~-~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~---~~~~~~~~~~lGa~~~i   77 (171)
T d1iz0a2          16 AYLALKRAQA-RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAAS---RPEKLALPLALGAEEAA   77 (171)
T ss_dssp             HHHHHHHTTC-CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEES---SGGGSHHHHHTTCSEEE
T ss_pred             HHHHHHHhCC-CCCCEEEEEeccccchhhhhhhhcccccccccccc---cccccccccccccceee
Confidence            4555654422 23455555 55799999999999999998776664   34577888899997665

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=88.14  E-value=0.67  Score=35.83  Aligned_cols=68  Identities=13%  Similarity=0.047  Sum_probs=48.3

Q ss_pred             hHHHHHhcCch-hccCCeEEE-ECCchHHHHHHHHHHHcCCCEEEEEcCC-CCHHHHHHHHHcCCEEEEEC
Q 020236           62 GASNAVLSLDE-DQAIKGVVT-HSSGNHAAALSLAAKLRGIPAYIVIPKN-APKCKVENVVRYGGQVIWSE  129 (329)
Q Consensus        62 ~a~~~l~~a~~-~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~i~~p~~-~~~~~~~~~~~~Ga~v~~~~  129 (329)
                      .|++++.+... +.+.+.+|. +.+|..|.++...|+.+|.++++++... ..+.+.+.++.+||+.+...
T Consensus        15 TA~~~l~~~~~~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~   85 (189)
T d1gu7a2          15 TAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITE   85 (189)
T ss_dssp             HHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEH
T ss_pred             HHHHHHHHHhCCCCCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEec
Confidence            45566654322 112334553 5789999999999999999999888654 45678888999999987653

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.90  E-value=0.78  Score=34.36  Aligned_cols=53  Identities=17%  Similarity=0.060  Sum_probs=41.0

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA  130 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~  130 (329)
                      ..++|+...+|.-|...+..++..|.+++++.   .++.|++.++.+|++.+....
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~---~~~~r~~~~k~~Ga~~~~~~~   79 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVD---IGDEKLELAKELGADLVVNPL   79 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHTTCEEEEEC---SCHHHHHHHHHTTCSEEECTT
T ss_pred             CCCEEEEeecccchhhhhHHHhcCCCeEeccC---CCHHHhhhhhhcCcceecccc
Confidence            34566666789999999999999999765543   467889999999998776544

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.75  E-value=2.4  Score=31.75  Aligned_cols=53  Identities=15%  Similarity=0.190  Sum_probs=42.4

Q ss_pred             CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA  130 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~  130 (329)
                      .+.|+....|.-|...+..++.+|..-++++.  ..+.|++..+.+||+.+....
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~~   79 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTD--LSATRLSKAKEIGADLVLQIS   79 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCSEEEECS
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEecc--CCHHHHHHHHHhCCccccccc
Confidence            45677778899999999999999997666654  347889999999998776654

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=87.45  E-value=0.59  Score=35.97  Aligned_cols=50  Identities=18%  Similarity=0.094  Sum_probs=40.7

Q ss_pred             CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS  128 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~  128 (329)
                      ...+|.+.+|.-|......|+.+|.+++.+..   ++.|.+.++.+||+.+.-
T Consensus        33 ~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~---~~~k~~~~~~lGad~vi~   82 (177)
T d1o89a2          33 GEIVVTGASGGVGSTAVALLHKLGYQVVAVSG---RESTHEYLKSLGASRVLP   82 (177)
T ss_dssp             CEEEESSTTSHHHHHHHHHHHHTTCCEEEEES---CGGGHHHHHHHTEEEEEE
T ss_pred             CcEEEEEccccchHHHHHHHHHcCCCeEEEec---chhHHHHHHhhccccccc
Confidence            34577778899999999999999999998775   455678888999997754

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=87.19  E-value=1.2  Score=33.57  Aligned_cols=64  Identities=13%  Similarity=0.018  Sum_probs=44.3

Q ss_pred             HHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECC
Q 020236           63 ASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEA  130 (329)
Q Consensus        63 a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~  130 (329)
                      ++..+..+.-+ ..+.|++...|.-|...+..++.+|.+.+++..   ++.+++..+.+|++.+....
T Consensus        19 ay~al~~~~~~-~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~---~~~~~~~a~~lGad~~i~~~   82 (168)
T d1uufa2          19 TYSPLRHWQAG-PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTT---SEAKREAAKALGADEVVNSR   82 (168)
T ss_dssp             HHHHHHHTTCC-TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEES---SGGGHHHHHHHTCSEEEETT
T ss_pred             HHHHHHHhCCC-CCCEEEEeccchHHHHHHHHhhcccccchhhcc---chhHHHHHhccCCcEEEECc
Confidence            45555544222 345566667799999999999999998876543   34467888899998775433

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.68  E-value=2.3  Score=31.92  Aligned_cols=49  Identities=18%  Similarity=0.209  Sum_probs=37.7

Q ss_pred             CCeEEEE-CCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236           76 IKGVVTH-SSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW  127 (329)
Q Consensus        76 ~~~vv~~-ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~  127 (329)
                      .+.|++. .+|..|.+....|+.+|.++++...   ++.|.+.++.+|++-+.
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~---~~~~~~~~~~~Ga~~vi   78 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAYGLKILGTAG---TEEGQKIVLQNGAHEVF   78 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEeccccccccccccccccCcccccccc---cccccccccccCccccc
Confidence            3445554 4799999999999999998877763   46788889999997554

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=86.47  E-value=1.8  Score=33.49  Aligned_cols=63  Identities=14%  Similarity=0.084  Sum_probs=45.7

Q ss_pred             HHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236           64 SNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE  129 (329)
Q Consensus        64 ~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~  129 (329)
                      ++.+..+.-+ ..++|++...|.-|...+..++.+|...++++.  .++.|++..+.+|++.+..+
T Consensus        15 ~~a~~~a~v~-~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d--~~~~rl~~a~~~Ga~~~~~~   77 (195)
T d1kola2          15 YHGAVTAGVG-PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGD--LNPARLAHAKAQGFEIADLS   77 (195)
T ss_dssp             HHHHHHTTCC-TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEE--SCHHHHHHHHHTTCEEEETT
T ss_pred             HHHHHHhCCC-CCCEEEEECcCHHHHHHHHHHHhhcccceeeec--ccchhhHhhhhccccEEEeC
Confidence            4444444222 345666677899999989999999987777664  35789999999999976543

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=86.04  E-value=0.26  Score=32.66  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=31.3

Q ss_pred             CeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCH
Q 020236           77 KGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPK  112 (329)
Q Consensus        77 ~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~  112 (329)
                      ++|..-.+|..|+-++.+|+.+|++++++-|+..++
T Consensus         2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~~p   37 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAEPA   37 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSCGG
T ss_pred             CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCCCc
Confidence            357778999999999999999999999999976443

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=85.78  E-value=1.6  Score=32.97  Aligned_cols=63  Identities=19%  Similarity=0.179  Sum_probs=44.0

Q ss_pred             HHHHHhcCchhccCCeEEE-ECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 020236           63 ASNAVLSLDEDQAIKGVVT-HSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS  128 (329)
Q Consensus        63 a~~~l~~a~~~~~~~~vv~-~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~  128 (329)
                      |++.+.+..+-...+.|+. +.+|..|..+...|+.+|.++++...   ++.+.+.++.+|++.+.-
T Consensus        13 A~~al~~~~~~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~---~~~~~~~l~~~Ga~~vi~   76 (183)
T d1pqwa_          13 AWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAG---SDAKREMLSRLGVEYVGD   76 (183)
T ss_dssp             HHHHHHTTSCCCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEES---SHHHHHHHHTTCCSEEEE
T ss_pred             HHHHHHHHhCCCCCCEEEEECCCCCcccccchhhccccccceeeec---cccccccccccccccccc
Confidence            4445443322123345555 66799999999999999998888764   457788999999886643

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=85.76  E-value=1.5  Score=35.53  Aligned_cols=70  Identities=16%  Similarity=0.177  Sum_probs=48.4

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHHcC
Q 020236           78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEETG  147 (329)
Q Consensus        78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~~~  147 (329)
                      .||+.+++.-|+++|....+.|.++++.--... -+...+.++..|.+++.+..|   .+++.+..++..++.+
T Consensus         4 alITGas~GIG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (255)
T d1gega_           4 ALVTGAGQGIGKAIALRLVKDGFAVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLG   77 (255)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTT
T ss_pred             EEEcCCccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            478888999999999998889998766543211 123345677888888776654   5566666666666644

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.63  E-value=0.98  Score=34.04  Aligned_cols=61  Identities=16%  Similarity=0.151  Sum_probs=42.3

Q ss_pred             HHHHHhcCchhccCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236           63 ASNAVLSLDEDQAIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW  127 (329)
Q Consensus        63 a~~~l~~a~~~~~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~  127 (329)
                      ++..+..+.. ...+.|+....|..|...+..++.+|.+++++-.   ++.|++..+.+||+.+.
T Consensus        16 a~~al~~~~~-~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~---~~~k~~~a~~lGa~~~i   76 (168)
T d1piwa2          16 VYSPLVRNGC-GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISR---SSRKREDAMKMGADHYI   76 (168)
T ss_dssp             HHHHHHHTTC-STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEES---SSTTHHHHHHHTCSEEE
T ss_pred             HHHHHHHhCc-CCCCEEEEECCCCcchhHHHHhhhcccccccccc---chhHHHHhhccCCcEEe
Confidence            4445544422 2345566667899999999999999998766543   34578888899987544

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.62  E-value=1.8  Score=32.89  Aligned_cols=51  Identities=20%  Similarity=0.146  Sum_probs=41.0

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW  127 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~  127 (329)
                      ..++|+....|--|......|+.+|..-++.+..  ++.|++..+.+||+.++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~--~~~kl~~Ak~~GA~~~i   79 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDL--NKDKFEKAMAVGATECI   79 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHHTCSEEE
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecC--cHHHHHHHHhcCCcEEE
Confidence            4567788788999999999999999877776643  46688888999998665

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=84.73  E-value=1.3  Score=36.53  Aligned_cols=71  Identities=10%  Similarity=0.038  Sum_probs=45.0

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC--CHHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHH
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA--PKCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEE  145 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~--~~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~  145 (329)
                      ++..||+.++|.-|.++|..-...|.++++.-....  .....+.....|.++..+..|   .++..+......++
T Consensus        25 gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~  100 (294)
T d1w6ua_          25 GKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKV  100 (294)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhh
Confidence            345688888899999999998889998877654321  122233445667777665443   44444445454444

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=84.30  E-value=0.83  Score=32.88  Aligned_cols=95  Identities=14%  Similarity=0.063  Sum_probs=59.0

Q ss_pred             eEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCCCCc
Q 020236           78 GVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPYNDG  157 (329)
Q Consensus        78 ~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~n~  157 (329)
                      .++....|+.|..+|..-...|.+++++=+   .+.+.+.++..|..++.-+.                        .+ 
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~---d~~~~~~~~~~~~~~~~gd~------------------------~~-   53 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDI---NEEKVNAYASYATHAVIANA------------------------TE-   53 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEES---CHHHHHHTTTTCSEEEECCT------------------------TC-
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecC---cHHHHHHHHHhCCcceeeec------------------------cc-
Confidence            467778999999999999989998877633   35555555555555443221                        11 


Q ss_pred             ccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEe
Q 020236          158 RIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAE  210 (329)
Q Consensus       158 ~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~  210 (329)
                                .+++++.+  +.|.++++++.-....=+....+...+..++++..
T Consensus        54 ----------~~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~~~~~~~~~~iiar~   98 (134)
T d2hmva1          54 ----------ENELLSLGIRNFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKA   98 (134)
T ss_dssp             ----------TTHHHHHTGGGCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEEC
T ss_pred             ----------chhhhccCCccccEEEEEcCchHHhHHHHHHHHHHcCCCcEEeec
Confidence                      23344433  56888888876433333344455566777777653

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=84.30  E-value=1.6  Score=33.05  Aligned_cols=51  Identities=14%  Similarity=0.102  Sum_probs=41.1

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW  127 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~  127 (329)
                      ..++|++...|--|......++.+|...++.+..  ++.|++..+.+||+-+.
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~--~~~kl~~a~~lGa~~~i   77 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGT--HKDKFPKAIELGATECL   77 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECS--CGGGHHHHHHTTCSEEE
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCC--hHHHHHHHHHcCCcEEE
Confidence            3466777778999999999999999988877754  46788888999998664

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=84.15  E-value=2.1  Score=32.08  Aligned_cols=52  Identities=13%  Similarity=0.027  Sum_probs=40.9

Q ss_pred             CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEEC
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWSE  129 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~  129 (329)
                      .+.|+....|.-|...+..++.+|...++++..  ++.|++.++.+|++.+...
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~--~~~k~~~~~~~ga~~~i~~   84 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLKLAERLGADHVVDA   84 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHHHHHHTTCSEEEET
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccc--hhHHHHHHhhcccceeecC
Confidence            456777788999999999999999887776643  4688999999999765443

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=84.14  E-value=1.5  Score=33.36  Aligned_cols=50  Identities=28%  Similarity=0.179  Sum_probs=38.5

Q ss_pred             CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW  127 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~  127 (329)
                      ...|++...|--|...+.+|+.+|.+-++++..  ++.|++..+.+||+.+.
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~--~~~r~~~a~~lGa~~~i   77 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGS--RPICVEAAKFYGATDIL   77 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECC--CHHHHHHHHHHTCSEEE
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccc--hhhhHHHHHhhCccccc
Confidence            445666678999999999999999865555543  57888999999986554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=82.00  E-value=1.3  Score=33.43  Aligned_cols=50  Identities=12%  Similarity=0.090  Sum_probs=40.6

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEE
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIW  127 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~  127 (329)
                      +...+|.+.+|.-|.+....|+.+|.+++..+..   +.|.+.++.+|++.+.
T Consensus        24 ~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s---~~k~~~~~~lGad~vi   73 (167)
T d1tt7a2          24 KGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGN---REAADYLKQLGASEVI   73 (167)
T ss_dssp             GCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESS---SSTHHHHHHHTCSEEE
T ss_pred             CCEEEEeCCcchHHHHHHHHHHHcCCceEEEecC---HHHHHHHHhhcccceE
Confidence            3345676778999999999999999999888753   4467888999999774

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.42  E-value=3  Score=33.44  Aligned_cols=73  Identities=12%  Similarity=-0.063  Sum_probs=48.9

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCC-HHHHHHHHHcCCEEEEECCC---HHHHHHHHHHHHHHcC
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAP-KCKVENVVRYGGQVIWSEAT---MHSRESVASKVLEETG  147 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~-~~~~~~~~~~Ga~v~~~~~~---~~~~~~~a~~~~~~~~  147 (329)
                      |+.-+|+..|+--|.++|..-...|.++++.-..... +...+.++..|.+++.+..|   .+++.+..++..++.+
T Consensus         7 Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g   83 (244)
T d1yb1a_           7 GEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIG   83 (244)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcC
Confidence            3455788888999999999999999987775432211 12344567788887766553   5555666666666544

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=81.23  E-value=1.6  Score=33.20  Aligned_cols=52  Identities=13%  Similarity=0.082  Sum_probs=41.8

Q ss_pred             cCCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Q 020236           75 AIKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNAPKCKVENVVRYGGQVIWS  128 (329)
Q Consensus        75 ~~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~  128 (329)
                      ..++|+....|--|...+..++.+|...+++...  ++.|++..+.+|++.+.-
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~--~~~r~~~a~~~Ga~~~i~   79 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDI--NGEKFPKAKALGATDCLN   79 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECS--CGGGHHHHHHTTCSEEEC
T ss_pred             CCCEEEEECCChHHHHHHHHHHHhCCceeeeecc--chHHHHHHHHhCCCcccC
Confidence            3466777789999999999999999988877754  456889999999987643

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=80.31  E-value=8.4  Score=27.83  Aligned_cols=100  Identities=16%  Similarity=0.116  Sum_probs=62.1

Q ss_pred             CCeEEEECCchHHHHHHHHHHHcCCCEEEEEcCCC-CHHHHHHHHHcCCEEEEECCCHHHHHHHHHHHHHHcCCEeeCCC
Q 020236           76 IKGVVTHSSGNHAAALSLAAKLRGIPAYIVIPKNA-PKCKVENVVRYGGQVIWSEATMHSRESVASKVLEETGAVLVHPY  154 (329)
Q Consensus        76 ~~~vv~~ssGN~g~a~A~~a~~~G~~~~i~~p~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~a~~~~~~~~~~~~~~~  154 (329)
                      +.++|.+..|+.|..++..-...|.+++++-.... ...........|..++.-+.                        
T Consensus         3 knHiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~------------------------   58 (153)
T d1id1a_           3 KDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDS------------------------   58 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCT------------------------
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccC------------------------
Confidence            45788999999999999887777887776653321 11112222222333322111                        


Q ss_pred             CCcccccccCcchHHHHhhCC--CCCEEEEeCCCChHHHHHHHHHHHhCCCCEEEEEe
Q 020236          155 NDGRIISGQGTISLEFLEQVP--LLDTIIVPISGGGLISGVALAAKSIKPAIRILAAE  210 (329)
Q Consensus       155 ~n~~~~~g~~t~~~Ei~~ql~--~~d~vv~~~GtGg~~~Gi~~~~k~~~~~~~vi~v~  210 (329)
                      .+           .+++++.+  +.|.+++.++.=..-.-++...|..+|..++++..
T Consensus        59 ~d-----------~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~~~r~~~~~~~iia~~  105 (153)
T d1id1a_          59 ND-----------SSVLKKAGIDRCRAILALSDNDADNAFVVLSAKDMSSDVKTVLAV  105 (153)
T ss_dssp             TS-----------HHHHHHHTTTTCSEEEECSSCHHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred             cc-----------hHHHHHhccccCCEEEEccccHHHHHHHHHHHHHhCCCCceEEEE
Confidence            11           35565544  57888888887555555667778888999988764