Citrus Sinensis ID: 020238

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------33
Protein Sequence
MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQVMAIARWKQLQEKVCCVF
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEcccccccccccccccccccccccEEccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEcccccccccccccccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccHcccHHHcccccccEEEccccccccccccccccccccccEEEEcccccccccccHHHcccccccEEEccccccccccccccccccccEEEccccccccccHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccccccccHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHHHHcccEEEccccccccccccccccccEEEccccccHccccHHHcccccccEEEcccccccccccHHHccHHHHHHHHHccccccccccHHEEccc
Coil and Loop (DISEMBL)
mphgniqqLWDSVQHNGKLKQIISRASnfftkspnhsltLHLDKLVNlnlnnckslrilppgiFRLEFLKELdlwgcsklktlpeissagnIEVMYLNgtaieelpsSIECLSGLSALYLDHCKrlkslpsslcklkslNSIYLRWCSSLKSLPNELGNLEALNSlnaegtairevpLSIVRLNnfdglqnltslyltdcgitelpenLGQLSLLLELYLEknnferlpeSIIHLSKLAYLKLSYCErlqslpklpcnlseldahhctalesspglvfpsrdpqyfdlrnnlkldRNEIREILEDAQQEIQVMAIARWKQLQEKVCCVF
Flexible Loop (DISEMBL)
MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLktlpeissagNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQVMAIARWKQLQEKVCCVF
Low Complexity Region (SEG)
MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCkrlkslpsslcklkslnsIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITelpenlgqlslllelyleknnfeRLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQVMAIARWKQLQEKVCCVF
Disordered region (IsUnstruct)
********LWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQVMAIARWKQLQEKVCCV*
Disordered Region (DISOPRED)
*PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQVMAIARWKQLQEKVCCVF
Disordered Region (DISEMBL)
MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQVMAIARWKQLQEKVCCVF
Disordered Region (DISPRO)
****NIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQVMAIARWKQLQEKVCCVF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLxxxxxxxxxxxxxxxxxxxxxIQVMAIARWKQLQEKVCCVF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	329	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.793	0.228	0.354	6e-34
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.784	0.198	0.325	2e-22
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.434	0.075	0.424	1e-18
B0W6M9	628	Leucine-rich repeat prote	N/A	no	0.574	0.300	0.33	3e-15
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	no	0.802	0.142	0.300	6e-15
O82500	1095	Putative disease resistan	no	no	0.644	0.193	0.317	8e-15
Q9RBS2	1024	Protein PopC OS=Ralstonia	yes	no	0.726	0.233	0.298	1e-14
Q5F4C4	529	Leucine-rich repeat prote	yes	no	0.607	0.378	0.322	8e-14
Q22875	559	Leucine-rich repeat prote	no	no	0.714	0.420	0.294	2e-13
Q8AVI4	577	Leucine-rich repeat prote	N/A	no	0.607	0.346	0.312	9e-12

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score =  144 bits (364), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 110/310 (35%), Positives = 161/310 (51%), Gaps = 49/310 (15%)

Query: 3   HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLD------------------- 43
           H +++ LW   +H   L++I    S   T++P+ +   +L+                   
Sbjct: 605 HNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDFTGMPNLEYVNLYQCSNLEEVHHSLGC 664

Query: 44  --KLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEV-MYLNGT 100
             K++ L LN+CKSL+  P     +E L+ L L  C  L+ LPEI      E+ +++ G+
Sbjct: 665 CSKVIGLYLNDCKSLKRFP--CVNVESLEYLGLRSCDSLEKLPEIYGRMKPEIQIHMQGS 722

Query: 101 AIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGN 159
            I ELPSSI +  + ++ L L + K L +LPSS+C+LKSL S+ +  CS L+SLP E+G+
Sbjct: 723 GIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPEEIGD 782

Query: 160 LEALNSLNAEGTAIREVPLSIVRLNNF--------------------DGLQNLTSLYLTD 199
           L+ L   +A  T I   P SI+RLN                      +GL +L  L L+ 
Sbjct: 783 LDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSY 842

Query: 200 CGITE--LPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPC 257
           C + +  LPE +G LS L +L L +NNFE LP SI  L  L  L L  C+RL  LP+LP 
Sbjct: 843 CNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPP 902

Query: 258 NLSEL--DAH 265
            L+EL  D H
Sbjct: 903 ELNELHVDCH 912

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score =  106 bits (265), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/332 (32%), Positives = 154/332 (46%), Gaps = 74/332 (22%)

Query: 7    QQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGI--- 63
            ++LW+ +Q  G L+ +    S   T+ P+ S    L+ L+   LNNCKSL  LP  I   
Sbjct: 763  EKLWEGIQSLGSLEGMDLSESENLTEIPDLSKATKLESLI---LNNCKSLVTLPSTIGNL 819

Query: 64   ---FRLEF-----------------LKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 103
                RLE                  L+ LDL GCS L++ P IS+  NI  +YL  TAIE
Sbjct: 820  HRLVRLEMKECTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLIST--NIVWLYLENTAIE 877

Query: 104  ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEAL 163
            E+PS+I  L  L  L +  C  L+ LP+ +  L SL ++ L  CSSL+S P      E++
Sbjct: 878  EIPSTIGNLHRLVRLEMKKCTGLEVLPTDV-NLSSLETLDLSGCSSLRSFPL---ISESI 933

Query: 164  NSLNAEGTAIREVP-------LSIVRLNN----------FDGLQNLTSLYLTDC-GITEL 205
              L  E TAI E+P       L  ++LNN             LQ L S  + +C G+  L
Sbjct: 934  KWLYLENTAIEEIPDLSKATNLKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVL 993

Query: 206  PENLGQLSLLL--------------------ELYLEKNNFERLPESIIHLSKLAYLKLSY 245
            P ++   SL++                     LYLE    E +P +I +L +L  L++  
Sbjct: 994  PIDVNLSSLMILDLSGCSSLRTFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVKLEMKE 1053

Query: 246  CERLQSLPKLPCNLSE---LDAHHCTALESSP 274
            C  L+ LP    NLS    LD   C++L + P
Sbjct: 1054 CTGLEVLPT-DVNLSSLMILDLSGCSSLRTFP 1084

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score = 94.4 bits (233), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 88/146 (60%), Gaps = 3/146 (2%)

Query: 44   KLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 103
            KLV LNL  C  L  +P  +  LE L+ L+L GCSKL   PEIS   N++ +Y+ GT I+
Sbjct: 1306 KLVFLNLKGCSKLENIP-SMVDLESLEVLNLSGCSKLGNFPEISP--NVKELYMGGTMIQ 1362

Query: 104  ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEAL 163
            E+PSSI+ L  L  L L++ + LK+LP+S+ KLK L ++ L  C SL+  P+    ++ L
Sbjct: 1363 EIPSSIKNLVLLEKLDLENSRHLKNLPTSIYKLKHLETLNLSGCISLERFPDSSRRMKCL 1422

Query: 164  NSLNAEGTAIREVPLSIVRLNNFDGL 189
              L+   T I+E+P SI  L   D L
Sbjct: 1423 RFLDLSRTDIKELPSSISYLTALDEL 1448

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.

Arabidopsis thaliana (taxid: 3702)

>sp|B0W6M9|SUR8_CULQU Leucine-rich repeat protein soc-2 homolog OS=Culex quinquefasciatus GN=Sur-8 PE=3 SV=1

 Score = 82.8 bits (203), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 66/200 (33%), Positives = 109/200 (54%), Gaps = 11/200 (5%)

Query: 55  SLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLS 113
           S+ ++PP +     L E  L+G +K+ +LP EI    N++ + LN  ++  LP S++ L 
Sbjct: 158 SITVIPPSVKDCTSLIEFYLYG-NKISSLPVEIGCLSNLKTLALNENSLTSLPDSLQNLK 216

Query: 114 GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAI 173
            L  L L H K L  +P  + KL +L ++YLR+ + +K + + L NL +L  L+     I
Sbjct: 217 ALKVLDLRHNK-LSEIPDVIYKLHTLTTLYLRF-NRIKVVGDNLKNLSSLTMLSLRENKI 274

Query: 174 REVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESII 233
            E+P +I        L+NLT+L L+   +  LPE +G    L  L L+ N+   +PE+I 
Sbjct: 275 HELPAAI------GHLRNLTTLDLSHNHLKHLPEAIGNCVNLTALDLQHNDLLDIPETIG 328

Query: 234 HLSKLAYLKLSYCERLQSLP 253
           +L+ L  L L Y  +L ++P
Sbjct: 329 NLANLQRLGLRY-NQLTAIP 347

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation.

Culex quinquefasciatus (taxid: 7176)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 82.0 bits (201), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 88/293 (30%), Positives = 132/293 (45%), Gaps = 29/293 (9%)

Query: 5   NIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIF 64
           +I  + D ++H   L Q+   +SN   K P  S    L  L  L LN+  SL  LP    
Sbjct: 94  DIPDIPDDIKHLQSL-QVADFSSNPIPKLP--SGFSQLKNLTVLGLND-MSLTTLPADFG 149

Query: 65  RLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHC 123
            L  L+ L+L   + LK LPE IS    ++ + L    IE+LP  +  L GL  L+LDH 
Sbjct: 150 SLTQLESLELRE-NLLKHLPETISQLTKLKRLDLGDNEIEDLPPYLGYLPGLHELWLDH- 207

Query: 124 KRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRL 183
            +L+ LP  L  L  L  + +   + L+ LPNE+  L +L  L+     +  +P  I +L
Sbjct: 208 NQLQRLPPELGLLTKLTYLDVSE-NRLEELPNEISGLVSLTDLDLAQNLLEALPDGIAKL 266

Query: 184 NNFDGL-----------------QNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE 226
           +    L                 +N+  L LT+  ++ELP ++GQ++ L  L +++N  E
Sbjct: 267 SRLTILKLDQNRLQRLNDTLGNCENMQELILTENFLSELPASIGQMTKLNNLNVDRNALE 326

Query: 227 RLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFP 279
            LP  I   + L  L L    R   L KLP  L      H   +  +  L  P
Sbjct: 327 YLPLEIGQCANLGVLSL----RDNKLKKLPPELGNCTVLHVLDVSGNQLLYLP 375

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 81.6 bits (200), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 73/230 (31%), Positives = 122/230 (53%), Gaps = 18/230 (7%)

Query: 45  LVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG-TAIE 103
           LV LN+++ K L+ L  G+  L  L+ ++L     L+ LP +  A  +  + L    ++ 
Sbjct: 610 LVELNMSHSK-LKKLWSGVQPLRNLRTMNLNSSRNLEILPNLMEATKLNRLDLGWCESLV 668

Query: 104 ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEAL 163
           ELPSSI+ L  L  L +  CK+L+ +P+++  L SL  ++ R+C+ L++ P    N+  L
Sbjct: 669 ELPSSIKNLQHLILLEMSCCKKLEIIPTNI-NLPSLEVLHFRYCTRLQTFPEISTNIRLL 727

Query: 164 NSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLE-LYLEK 222
           N +   GTAI EVP S+   +  D +          C      + L  +  +LE L L +
Sbjct: 728 NLI---GTAITEVPPSVKYWSKIDEI----------CMERAKVKRLVHVPYVLEKLCLRE 774

Query: 223 NN-FERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALE 271
           N   E +P  + +L +L  + +SYC  + SLPKLP ++S L A +C +L+
Sbjct: 775 NKELETIPRYLKYLPRLQMIDISYCINIISLPKLPGSVSALTAVNCESLQ 824

Arabidopsis thaliana (taxid: 3702)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 80.9 bits (198), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 132/278 (47%), Gaps = 39/278 (14%)

Query: 16  NGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLW 75
           N KL+ + +   N FT             L  L+L +   L  LP    +L  L+EL L 
Sbjct: 414 NTKLRDLPASIGNLFT-------------LKTLSLQDNPKLGSLPASFGQLSGLQELTLN 460

Query: 76  GCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCK 135
           G +++  LP +  A +++ + ++ TA+  LP+    L  L+ L L + + L+ LP++   
Sbjct: 461 G-NRIHELPSMGGASSLQTLTVDDTALAGLPADFGALRNLAHLSLSNTQ-LRELPANTGN 518

Query: 136 LKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP-------LSIVRLNNFD- 187
           L +L ++ L+    L +LP+ LG L  L  L  + +++ E+P       L  + + N   
Sbjct: 519 LHALKTLSLQGNQQLATLPSSLGYLSGLEELTLKNSSVSELPPMGPGSALKTLTVENSPL 578

Query: 188 -------GLQ--NLTSLYLTDCGITELPENLGQLSLLLELYLEKN-NFERLPESIIH-LS 236
                  G+Q   LT L L++  +  LP ++G+LS L  L L+ N   E L ES +  L 
Sbjct: 579 TSIPADIGIQCERLTQLSLSNTQLRALPSSIGKLSNLKGLTLKNNARLELLSESGVRKLE 638

Query: 237 KLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTAL 270
            +  + LS C RL  LP    KLP  L  LD   CT L
Sbjct: 639 SVRKIDLSGCVRLTGLPSSIGKLP-KLRTLDLSGCTGL 675

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|Q5F4C4|SHOC2_CHICK Leucine-rich repeat protein SHOC-2 OS=Gallus gallus GN=SHOC2 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 68/211 (32%), Positives = 113/211 (53%), Gaps = 11/211 (5%)

Query: 54  KSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECL 112
           +S+ +LP  +  L  L EL L+  +KL++LP E+    N+  + L+  ++  LP S++ L
Sbjct: 110 RSIHMLPSAVKELTQLTELYLY-SNKLQSLPAEVGCLVNLVTLALSENSLTSLPDSLDNL 168

Query: 113 SGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172
             L  L L H K L+ +PS + +L SL ++YLR+ + + ++  ++  L  L  L+     
Sbjct: 169 KKLRMLDLRHNK-LREIPSVVYRLTSLATLYLRF-NRITTVEKDIKTLSKLTMLSIRENK 226

Query: 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESI 232
           I+++P  I  L       NL +L +    +  LPE +G  + +  L L+ N    LPE+I
Sbjct: 227 IKQLPAEIGEL------CNLITLDVAHNQLEHLPEEIGSCTQITNLDLQHNELLDLPETI 280

Query: 233 IHLSKLAYLKLSYCERLQSLPKLPCNLSELD 263
            +LS L+ L L Y  RL ++PK     SELD
Sbjct: 281 GNLSSLSRLGLRY-NRLSAIPKSLAKCSELD 310

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of RAF1 kinase and stimulate RAF1 activity at specialized signaling complexes.

Gallus gallus (taxid: 9031)

>sp|Q22875|SHOC2_CAEEL Leucine-rich repeat protein soc-2 OS=Caenorhabditis elegans GN=soc-2 PE=1 SV=3

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 78/265 (29%), Positives = 126/265 (47%), Gaps = 30/265 (11%)

Query: 59  LPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLSA 117
           +P  I  L  L EL L+  +KL  LP EI    N++ + L+  A+  LP S+  L  L  
Sbjct: 88  IPSPIKELTQLTELFLYK-NKLTCLPTEIGQLVNLKKLGLSENALTSLPDSLASLESLET 146

Query: 118 LYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP 177
           L L H K L  +PS + K+ SL +++LR+ + + ++  ++GNL  L  L+     IRE+P
Sbjct: 147 LDLRHNK-LTEVPSVIYKIGSLETLWLRY-NRIVAVDEQIGNLSKLKMLDVRENKIRELP 204

Query: 178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSK 237
            +I +L +      L    ++   +T +PE +G    L +L L+ N+   LP SI  L  
Sbjct: 205 SAIGKLTS------LVVCLVSYNHLTRVPEEIGDCHSLTQLDLQHNDLSELPYSIGKLVN 258

Query: 238 LAYLKLSY------------CERLQS-------LPKLPCN-LSELDAHHCTALESSPGLV 277
           L  + + Y            C++L+        L  LP N L+ L   H   L  +    
Sbjct: 259 LVRIGIRYNKIRCIPSELESCQQLEEFIVESNHLQLLPPNLLTMLPKIHTVNLSRNELTA 318

Query: 278 FPSRDPQYFDLRNNLKLDRNEIREI 302
           FP+  PQ F     + ++ N+I +I
Sbjct: 319 FPAGGPQQFVSTVTINMEHNQISKI 343

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation. Required for vulval development.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8AVI4|SHOC2_XENLA Leucine-rich repeat protein SHOC-2 OS=Xenopus laevis GN=shoc2 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 66/211 (31%), Positives = 113/211 (53%), Gaps = 11/211 (5%)

Query: 54  KSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECL 112
           KS+ +LP  I  L  + EL L+G +KL++LP E+ +  N+  + L+  ++  LP S++ L
Sbjct: 105 KSIHMLPVSIKDLTQITELYLYG-NKLQSLPAEVGNLVNLVKLALSENSLTSLPDSLDNL 163

Query: 113 SGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172
             L  L L H K L+ +P  + +L SL +++LR+ + + ++  +L  L  L  L+     
Sbjct: 164 KKLCMLDLRHNK-LREIPPVVYRLSSLTTLFLRF-NRITAVEKDLKMLPKLTMLSIRENK 221

Query: 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESI 232
           I+ +P  I        L NL +L +    +  LP+ +G  + +  L L+ N    LP++I
Sbjct: 222 IKHLPAEIGE------LCNLITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPDTI 275

Query: 233 IHLSKLAYLKLSYCERLQSLPKLPCNLSELD 263
            +LS L+ L L Y  RL ++P+     SELD
Sbjct: 276 GNLSSLSRLGLRY-NRLSAVPRSLSKCSELD 305

Regulatory subunit of protein phosphatase 1 (PP1c) that acts as a M-Ras/MRAS effector and participates in MAPK pathway activation. Upon M-Ras/MRAS activation, targets PP1c to specifically dephosphorylate the 'Ser-259' inhibitory site of raf1 kinase and stimulate raf1 activity at specialized signaling complexes.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
297794743	1184	predicted protein [Arabidopsis lyrata su	0.829	0.230	0.413	6e-45
451798988	1219	TMV resistance protein N-like protein 6	0.826	0.223	0.396	2e-43
451798990	1335	TMV resistance protein N-like protein 7	0.826	0.203	0.393	4e-43
359493487	1162	PREDICTED: TMV resistance protein N-like	0.945	0.267	0.366	1e-42
359493483	1274	PREDICTED: TMV resistance protein N-like	0.945	0.244	0.361	1e-41
359496026	1250	PREDICTED: TMV resistance protein N-like	0.829	0.218	0.377	2e-39
359486075	1291	PREDICTED: TMV resistance protein N-like	0.832	0.212	0.389	4e-39
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.711	0.194	0.416	1e-38
147770134	1414	hypothetical protein VITISV_040107 [Viti	0.832	0.193	0.386	2e-38
359486073	1296	PREDICTED: TMV resistance protein N-like	0.829	0.210	0.386	4e-38

>gi|297794743|ref|XP_002865256.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297311091|gb|EFH41515.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  187 bits (475), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/300 (41%), Positives = 163/300 (54%), Gaps = 27/300 (9%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            +D LV LN   C SL+ LP GI  L+ LK L L GCSKL+T P IS   NIE +YL+GT
Sbjct: 571 QMDSLVYLNFRECTSLKSLPKGI-SLKSLKSLILSGCSKLRTFPTISE--NIESLYLDGT 627

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
           AI+ +P SI+ L  L+ L L  C +L+ LPS+LCK+KSL  + L  CS LK  P    ++
Sbjct: 628 AIKRVPESIDSLRYLAVLNLKKCCKLRHLPSNLCKMKSLQELILSGCSKLKCFPEIDEDM 687

Query: 161 EALNSLNAEGTAIREVPLSIVRLN--------------------NFDGLQNLTSLYLTDC 200
           E L  L  + TAI+++P+ +   N                     F G  +L+ LYLTDC
Sbjct: 688 EHLEILLMDDTAIKQIPIKMCMSNLKMFTFGGSKFQGSTGYELLPFSGCSHLSDLYLTDC 747

Query: 201 GITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLS 260
            + +LP N   LS +  L L +NN E LPESI  L  L  L L +C +L SLP LP NL 
Sbjct: 748 NLHKLPNNFSCLSSVHSLCLSRNNLEYLPESIKILHHLKSLDLKHCRKLNSLPVLPSNLQ 807

Query: 261 ELDAHHCTALESSPG----LVFPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQVMAIA 316
            LDAH C +LE+       LV   R    F   +  KL+R     I+  AQ + Q++A A
Sbjct: 808 YLDAHDCASLETVANPMTHLVLAERVQSTFLFTDCFKLNREAQENIVAHAQLKSQILANA 867

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798988|gb|AGF69192.1| TMV resistance protein N-like protein 6 [Vitis labrusca]

 Score =  182 bits (462), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 126/318 (39%), Positives = 177/318 (55%), Gaps = 46/318 (14%)

Query: 41   HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM---YL 97
            +L  L  LNL  CKSL  LP  IF+L+ LK L L  C++LK LPEI    N+E +   +L
Sbjct: 761  NLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQE--NMESLMELFL 818

Query: 98   NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL 157
            +G+ I ELPSSI CL+GL  L L +CK+L SLP S C+L SL ++ L  CS LK LP++L
Sbjct: 819  DGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLGTLTLCGCSELKELPDDL 878

Query: 158  GNLEALNSLNAEGTAIREVPLSI-----------------------------------VR 182
            G+L+ L  LNA+G+ I+EVP SI                                   +R
Sbjct: 879  GSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPTEELR 938

Query: 183  LNNFDGLQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAY 240
            L +F GL +L  L L  C ++E  LP +LG +  L  L L +N+F  +P S+  LS+L  
Sbjct: 939  LPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRS 998

Query: 241  LKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN----LKLDR 296
            L L YC+ LQSLP+LP ++  L+AH CT+LE+           ++ DLR N     +L  
Sbjct: 999  LTLEYCKSLQSLPELPSSVESLNAHSCTSLETFSCSSGAYTSKKFGDLRFNFTNCFRLGE 1058

Query: 297  NEIREILEDAQQEIQVMA 314
            N+  +I+    + IQ+M+
Sbjct: 1059 NQGSDIVGAILEGIQLMS 1076

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca]

 Score =  181 bits (459), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 125/318 (39%), Positives = 176/318 (55%), Gaps = 46/318 (14%)

Query: 41   HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM---YL 97
            +L  L  LNL  CKSL  LP  IF+L+ LK L L  C++LK LPEI    N+E +   +L
Sbjct: 769  NLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSNCTRLKKLPEIQE--NMESLMELFL 826

Query: 98   NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL 157
            +G+ I ELPSSI CL+GL  L L +CK+L SLP S C+L SL ++ L  CS LK LP+ L
Sbjct: 827  DGSGIIELPSSIGCLNGLVFLNLKNCKKLASLPQSFCELTSLRTLTLCGCSELKDLPDNL 886

Query: 158  GNLEALNSLNAEGTAIREVPLSI-----------------------------------VR 182
            G+L+ L  LNA+G+ ++EVP SI                                   +R
Sbjct: 887  GSLQCLTELNADGSGVQEVPPSITLLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEELR 946

Query: 183  LNNFDGLQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAY 240
            L +F GL +L  L L  C ++E  LP +LG +  L  L L +N+F  +P S+  LS+L  
Sbjct: 947  LPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLRS 1006

Query: 241  LKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN----LKLDR 296
            L L YC+ LQSLP+LP ++  L+AH CT+LE+           ++ DLR N     +L  
Sbjct: 1007 LTLEYCKSLQSLPELPSSVESLNAHSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLGE 1066

Query: 297  NEIREILEDAQQEIQVMA 314
            N+  +I+    + IQ+M+
Sbjct: 1067 NQGSDIVGAILEGIQLMS 1084

Source: Vitis labrusca

Species: Vitis labrusca

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493487|ref|XP_003634612.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  180 bits (456), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 139/379 (36%), Positives = 196/379 (51%), Gaps = 68/379 (17%)

Query: 1    MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHS----------------LTLH--- 41
            M    ++QLW+  +   KLK I    S   TK+P+ S                + +H   
Sbjct: 644  MCFSRLKQLWEGKKGFEKLKSIKLSHSQHLTKTPDFSGVPNLRRLILKGCTSLVEVHPSI 703

Query: 42   --LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM---Y 96
              L KL+ LNL  CK L+     I  +E L+ L L GCSKLK  PE+   GN+E +    
Sbjct: 704  GALKKLIFLNLEGCKKLKSFSSSI-HMESLQILTLSGCSKLKKFPEVQ--GNMEHLPNLS 760

Query: 97   LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE 156
            L GTAI+ LP SIE L+GL+ L L  CK L+SLP S+ KLKSL ++ L  CS LK LP++
Sbjct: 761  LEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLTLCGCSELKELPDD 820

Query: 157  LGNLEALNSLNAEGTAIREVPLSI-----------------------------------V 181
            LG+L+ L  LNA+G+ I+EVP SI                                   +
Sbjct: 821  LGSLQCLAELNADGSGIQEVPPSITLLTNLQKLSLAGCKGGDSKSRNMVFSFHSSPTEEL 880

Query: 182  RLNNFDGLQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERLPESIIHLSKLA 239
            RL +F GL +L  L L  C ++E  LP +LG +  L  L L +N+F  +P S+  LS+L 
Sbjct: 881  RLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLR 940

Query: 240  YLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN----LKLD 295
             L L YC+ LQSLP+LP ++  L+AH CT+LE+           ++ DLR N     +L 
Sbjct: 941  SLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFSCSSGAYTSKKFGDLRFNFTNCFRLG 1000

Query: 296  RNEIREILEDAQQEIQVMA 314
             N+  +I+    + IQ+M+
Sbjct: 1001 ENQGSDIVGAILEGIQLMS 1019

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493483|ref|XP_003634610.1| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  176 bits (447), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 137/379 (36%), Positives = 193/379 (50%), Gaps = 68/379 (17%)

Query: 1    MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHS----------------LTLH--- 41
            M    ++Q W+  +   KLK I    S   TK P+ S                + +H   
Sbjct: 638  MCFSRLKQPWEGKKGFEKLKSIKLSHSQHLTKIPDFSGVPNLRRLILKGCTSLVEVHPSI 697

Query: 42   --LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM---Y 96
              L KL+ LNL  CK L+     I  +E L+ L L GCSKLK  PE+   GN+E +    
Sbjct: 698  GALKKLIFLNLEGCKKLKSFSSSI-HMESLQILTLSGCSKLKKFPEVQ--GNMEHLPNLS 754

Query: 97   LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE 156
            L GTAI+ LP SIE L+GL+ L L  CK L+SLP S+ KLKSL ++ L  CS LK LP+ 
Sbjct: 755  LEGTAIKGLPLSIENLTGLALLNLKECKSLESLPRSIFKLKSLKTLILSGCSELKDLPDN 814

Query: 157  LGNLEALNSLNAEGTAIREVPLSI-----------------------------------V 181
            LG+L+ L  LNA+G+ ++EVP SI                                   +
Sbjct: 815  LGSLQCLTELNADGSGVQEVPPSITLLTNLQILSLAGCKGGESKSRNMIFSFHSSPTEEL 874

Query: 182  RLNNFDGLQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERLPESIIHLSKLA 239
            RL +F GL +L  L L  C ++E  LP +LG +  L  L L +N+F  +P S+  LS+L 
Sbjct: 875  RLPSFSGLYSLRVLILQRCNLSEGALPSDLGSIPSLERLDLSRNSFITIPASLSGLSRLR 934

Query: 240  YLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN----LKLD 295
             L L YC+ LQSLP+LP ++  L+AH CT+LE+           ++ DLR N     +L 
Sbjct: 935  SLTLEYCKSLQSLPELPSSVESLNAHSCTSLETFTCSSSAYTSKKFGDLRFNFTNCFRLG 994

Query: 296  RNEIREILEDAQQEIQVMA 314
             N+  +I+    + IQ+M+
Sbjct: 995  ENQGSDIVGAILEGIQLMS 1013

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  169 bits (427), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 128/339 (37%), Positives = 177/339 (52%), Gaps = 66/339 (19%)

Query: 6   IQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLD---------------------K 44
           +++LW  V+H  KL+ I    S +  ++P+ S   +L+                     K
Sbjct: 639 VEELWKGVKHMEKLECIDLSHSQYLVRTPDFSGIPNLERLIFEGCTDLREVHQSLGVLSK 698

Query: 45  LVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEI-SSAGNIEVMYLNGTAIE 103
           L+ LNL +CK+L+  P  I  LE LK L L GCSKL   PEI  +   +  ++L+GTAI+
Sbjct: 699 LIFLNLKDCKNLQCFPSSI-ELESLKVLILSGCSKLDNFPEILENMEGLRELFLDGTAIK 757

Query: 104 ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEAL 163
           ELP S+E L+GL  L L +C+RL +LPSS+C LKSL+++ L  CS L+ LP  LGNLE L
Sbjct: 758 ELPLSVEHLNGLVLLNLRNCERLITLPSSICNLKSLSTLTLSGCSQLEKLPENLGNLECL 817

Query: 164 NSLNAEGTAIREVPLSIV----------------------------------------RL 183
             L A+G+A+ + P SIV                                        RL
Sbjct: 818 VELVADGSAVIQPPSSIVLLRNLKVLSFQGCNGSPSSRWNSRFWSMLCLRRISDSTGFRL 877

Query: 184 NNFDGLQNLTSLYLTDCGITE--LPENL-GQLSLLLELYLEKNNFERLPESIIHLSKLAY 240
            +  GL +L  L L+DC I E  LP +L G LS L  L L+ N+F  LP  I  L  L  
Sbjct: 878 PSLSGLCSLKQLNLSDCNIKEGALPNDLGGYLSSLEYLNLKGNDFVTLPTGISKLCNLKA 937

Query: 241 LKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFP 279
           L L  C+RLQ LP LP N++ ++A +CT+LE+  GL  P
Sbjct: 938 LYLGCCKRLQELPMLPPNINRINAQNCTSLETLSGLSAP 976

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486075|ref|XP_002273047.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  167 bits (424), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 123/316 (38%), Positives = 174/316 (55%), Gaps = 42/316 (13%)

Query: 41   HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEIS-SAGNIEVMYLNG 99
            +L+ L   NL  CKSL  LP  IF+L+ LK L L  C +LK LPEI  +  +++ ++L+ 
Sbjct: 763  YLNGLALFNLEECKSLESLPGCIFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDD 822

Query: 100  TAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGN 159
            T + ELPSSIE L+GL  L L +CKRL SLP S+CKL SL ++ L  CS LK LP+++G+
Sbjct: 823  TGLRELPSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGS 882

Query: 160  LEALNSLNAEGTAIREVPLSI-----------------------------------VRLN 184
            L+ L  L A G+ I+EVP SI                                   +RL+
Sbjct: 883  LQCLLKLKANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSRNLALSLRASPTDGLRLS 942

Query: 185  NFDGLQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLK 242
            +   L +L  L L+D  + E  LP +L  LS L  L L +NNF  +P S+  L  L  L 
Sbjct: 943  SLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRRLI 1002

Query: 243  LSYCERLQSLPKLPCNLSELDAHHCTALE--SSPGLVFPSR--DPQYFDLRNNLKLDRNE 298
            + +C+ LQSLP+LP ++ EL A+ CT+LE  S P   +P R      F+  N  +L  NE
Sbjct: 1003 VEHCKNLQSLPELPSSIKELLANDCTSLETFSYPSSAYPLRKFGDFNFEFSNCFRLVGNE 1062

Query: 299  IREILEDAQQEIQVMA 314
              + +E   QEI+++A
Sbjct: 1063 QSDTVEAILQEIRLVA 1078

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  166 bits (421), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 118/283 (41%), Positives = 154/283 (54%), Gaps = 49/283 (17%)

Query: 36  HSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGN---I 92
           HS   H +KL+ +NL +C+SL  LP  I  L  L+EL L GCSKLK  PEI   GN   +
Sbjct: 682 HSSIGHHNKLIYVNLMDCESLTSLPSRISGLNLLEELHLSGCSKLKEFPEIE--GNKKCL 739

Query: 93  EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKS 152
             + L+ T+IEELP SI+ L GL +L L  CK+L  LPSS+  LKSL +++L  CS L++
Sbjct: 740 RKLCLDQTSIEELPPSIQYLVGLISLSLKDCKKLSCLPSSINGLKSLKTLHLSGCSELEN 799

Query: 153 LPNELGNLEALNSLNAEGTAIREVPLSIVRLNN-----FDG-----------LQNL---- 192
           LP   G LE LN L+  GTAIRE P+SI  L N     F G            Q L    
Sbjct: 800 LPENFGQLECLNELDVSGTAIREPPVSIFSLKNLKILSFHGCAESSRSTTNIWQRLMFPL 859

Query: 193 ----------------------TSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERL 228
                                 T L L++C + E  +P ++G LS L +L L +N F  L
Sbjct: 860 MPGKRANSTSLVLPSLSGLSSLTRLGLSNCNLGEGAVPNDIGYLSSLRQLNLSRNKFVSL 919

Query: 229 PESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALE 271
           P SI  LS L +L++  C+ LQSLP+LP NL E   + CT+LE
Sbjct: 920 PTSIDQLSGLQFLRMEDCKMLQSLPELPSNLEEFRVNGCTSLE 962

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770134|emb|CAN76615.1| hypothetical protein VITISV_040107 [Vitis vinifera]

 Score =  166 bits (419), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 122/316 (38%), Positives = 173/316 (54%), Gaps = 42/316 (13%)

Query: 41   HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEIS-SAGNIEVMYLNG 99
            +L+ L   NL  CKSL  LP   F+L+ LK L L  C +LK LPEI  +  +++ ++L+ 
Sbjct: 736  YLNGLALFNLEECKSLESLPGCXFKLKSLKTLILSNCLRLKKLPEIQENMESLKELFLDD 795

Query: 100  TAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGN 159
            T + ELPSSIE L+GL  L L +CKRL SLP S+CKL SL ++ L  CS LK LP+++G+
Sbjct: 796  TGLRELPSSIEHLNGLVLLKLKNCKRLASLPESICKLTSLQTLTLSGCSELKKLPDDMGS 855

Query: 160  LEALNSLNAEGTAIREVPLSI-----------------------------------VRLN 184
            L+ L  L A G+ I+EVP SI                                   +RL+
Sbjct: 856  LQCLLKLKANGSGIQEVPSSITLLTRLQVLSLAGCKGGGSKSRNLALSLRASPTDGLRLS 915

Query: 185  NFDGLQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLK 242
            +   L +L  L L+D  + E  LP +L  LS L  L L +NNF  +P S+  L  L  L 
Sbjct: 916  SLTVLHSLKKLNLSDRNLLEGALPSDLSSLSWLECLDLSRNNFITVPTSLSRLPHLRRLI 975

Query: 243  LSYCERLQSLPKLPCNLSELDAHHCTALE--SSPGLVFPSR--DPQYFDLRNNLKLDRNE 298
            + +C+ LQSLP+LP ++ EL A+ CT+LE  S P   +P R      F+  N  +L  NE
Sbjct: 976  VEHCKNLQSLPELPSSIKELLANDCTSLETFSYPSSAYPLRKFGDFNFEFSNCFRLVGNE 1035

Query: 299  IREILEDAQQEIQVMA 314
              + +E   QEI+++A
Sbjct: 1036 QSDTVEAILQEIRLVA 1051

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486073|ref|XP_002272820.2| PREDICTED: TMV resistance protein N-like, partial [Vitis vinifera]

 Score =  164 bits (416), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 122/316 (38%), Positives = 177/316 (56%), Gaps = 43/316 (13%)

Query: 41   HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEIS-SAGNIEVMYLNG 99
            +L+ L  LNL  CKSL  LP  IF+L+ LK L L  CS+LK LPEI  +  +++ ++L+ 
Sbjct: 768  YLNGLALLNLEECKSLESLPSCIFKLKSLKTLILSNCSRLKKLPEIGENMESLKELFLDD 827

Query: 100  TAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGN 159
            T + ELPSSIE L+GL  L L +CKRL SLP S CKL SL ++ L  CS LK LP+++G+
Sbjct: 828  TGLRELPSSIEHLNGLVLLKLKNCKRLASLPESFCKLTSLQTLTLSGCSELKKLPDDMGS 887

Query: 160  LEALNSLNAEGTAIREVPLSI-----------------------------------VRLN 184
            L+ L  L A G+ I+EVP SI                                   +RL+
Sbjct: 888  LQCLLKLKANGSGIQEVPTSITLLTKLQVLSLAGCKGGGSKSKNLALSLRASPTDGLRLS 947

Query: 185  NFDGLQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLK 242
            +   L +L  L L+DC + E  LP +L  LS L  L L +N+F  +P S+  L +L  L 
Sbjct: 948  SLTVLHSLKKLNLSDCNLLEGALPSDLSSLSWLECLDLSRNSFITVP-SLSRLPRLERLI 1006

Query: 243  LSYCERLQSLPKLPCNLSELDAHHCTALE--SSPGLVFPSRDPQ--YFDLRNNLKLDRNE 298
            L +C+ L+SLP+LP ++ EL A+ CT+LE  S+P   +  R+    Y +  N  +L  NE
Sbjct: 1007 LEHCKSLRSLPELPSSVEELLANDCTSLETISNPSSAYAWRNSGHLYSEFCNCFRLVENE 1066

Query: 299  IREILEDAQQEIQVMA 314
              + +E   + I+++A
Sbjct: 1067 QSDNVEAILRGIRLVA 1082

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	329
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.930	0.242	0.327	8.2e-25
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.732	0.201	0.294	8.3e-23
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.458	0.111	0.358	3e-20
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.835	0.231	0.285	5.5e-19
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.930	0.259	0.273	1.5e-18
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.799	0.221	0.308	1.5e-18
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.805	0.217	0.285	1.8e-17
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.711	0.191	0.317	2.9e-17
TAIR|locus:2024588	997	RLM1 "RESISTANCE TO LEPTOSPHAE	0.768	0.253	0.283	1.2e-16
TAIR|locus:2170333	1197	CSA1 "constitutive shade-avoid	0.933	0.256	0.265	1.6e-16

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 8.2e-25, P = 8.2e-25
 Identities = 109/333 (32%), Positives = 155/333 (46%)

Query:     5 NIQQLWDSVQHNGKLKQI--ISRASNFFT---KSPNHSLTL-----HLDKLVNLNLNNCK 54
             N+Q  W  + H+ KL  +  +SRA    +   +      TL     +++ L+ LNL  C 
Sbjct:   663 NLQ--WLDLNHSSKLHSLSGLSRAQKLQSINLEGCTGLKTLPQVLQNMESLMFLNLRGCT 720

Query:    55 SLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSG 114
             SL  LP     L  L+ L L  CS+ K    I  A N+E +YL+GTAI+ELPS+I  L  
Sbjct:   721 SLESLPD--ITLVGLRTLILSNCSRFKEFKLI--AKNLEELYLDGTAIKELPSTIGDLQK 776

Query:   115 LSALYLDHCXXXXXXXXXXXXXXXXXXIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR 174
             L +L L  C                  I L  CSSL+S P    NL+ L +L  +GTAI+
Sbjct:   777 LISLKLKDCKNLLSLPDSIGNLKAIQEIILSGCSSLESFPEVNQNLKHLKTLLLDGTAIK 836

Query:   175 EVPLSIVRLNNFDGLQNLTSLYLTDCGITXXXXXXXXXXXXXXXXXXXXXXXRLPESIIH 234
             ++P  I  L++    Q LTS   ++C +                         LP SI +
Sbjct:   837 KIP-DI--LHHLSPDQGLTSSQ-SNCHLCEWPRGIYGLSSVRRLSLSSNEFRILPRSIGY 892

Query:   235 LSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALE-----SSPGLVFPSRDPQYFDLR 289
             L  L +L L +C+ L S+P LP NL  LDAH C +LE     S P L         F   
Sbjct:   893 LYHLNWLDLKHCKNLVSVPMLPPNLQWLDAHGCISLETISILSDPLLAETEHLHSTFIFT 952

Query:   290 NNLKLDRNEIREILEDAQQEIQVM--AIARWKQ 320
             N  KL + E   I    +++IQ+M  A+AR+++
Sbjct:   953 NCTKLYKVEENSIESYPRKKIQLMSNALARYEK 985

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 8.3e-23, Sum P(2) = 8.3e-23
 Identities = 75/255 (29%), Positives = 115/255 (45%)

Query:     1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP 60
             M   N+++LW+  +    LK +    S++  + PN S   +L++L    L NC SL  LP
Sbjct:   698 MRSSNLRKLWEGTKQLRNLKWMDLSYSSYLKELPNLSTATNLEEL---KLRNCSSLVELP 754

Query:    61 PGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL-NGTAIEELPSSIECLSGLSALY 119
               I +L  L+ LDL  CS L+ LP I +A  +  + L N +++ ELP SI   + L  L 
Sbjct:   755 SSIEKLTSLQILDLENCSSLEKLPAIENATKLRELKLQNCSSLIELPLSIGTATNLKQLN 814

Query:   120 LDHCXXXXXXXXXXXXXXXXXXIYLRWCSSLKSLPNELGNLEALNSLNAEGTA-IREVPL 178
             +  C                    L  CSSL +LP+ +GNL+ L  L   G + +  +P+
Sbjct:   815 ISGCSSLVKLPSSIGDITDLEVFDLSNCSSLVTLPSSIGNLQNLCKLIMRGCSKLEALPI 874

Query:   179 SIVRLNNFDGLQNLTSLYLTDCGITXXXXXXXXXXXXXXXXXXXXXXXRLPESIIHLSKL 238
             +I        L++L +L LTDC  +                        +P SI+  S L
Sbjct:   875 NI-------NLKSLDTLNLTDC--SQLKSFPEISTHISELRLKGTAIKEVPLSIMSWSPL 925

Query:   239 AYLKLSYCERLQSLP 253
             A  ++SY E L   P
Sbjct:   926 ADFQISYFESLMEFP 940

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 195 (73.7 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
 Identities = 58/162 (35%), Positives = 85/162 (52%)

Query:    39 TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLN 98
             ++HL  L  L+L+NCK L+ LP G   L  L +L L GCSKL+ + ++ +  N++ +YL 
Sbjct:   549 SIHLSSLEVLDLSNCKRLQNLPMGKGNLASLIKLMLSGCSKLQNIQDLPT--NLKELYLA 606

Query:    99 GTAIEELPSSIECLSGLSALYLDHCXXXXXXXXXXXXXXXXXXIYLRWCSSLKSLPNELG 158
             GT+I E+PSSI  L+ L     ++C                  + L  CS L+S+P+   
Sbjct:   607 GTSIREVPSSICHLTQLVVFDAENCKKLQDLPMGMGNLISLTMLILSGCSELRSIPDLPR 666

Query:   159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC 200
             NL  LN   AE T I+++P S      F+ L  L SL L  C
Sbjct:   667 NLRHLNL--AE-TPIKKLPSS------FEDLTKLVSLDLNHC 699

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 5.5e-19, P = 5.5e-19
 Identities = 84/294 (28%), Positives = 128/294 (43%)

Query:    45 LVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNI---EVMYLNG-T 100
             L+ L+L +C SL  LP  I  L  LK+L L  CS L  LP  SS GN+   + + L+G +
Sbjct:   706 LLELDLIDCSSLVKLPSSIGNLTNLKKLFLNRCSSLVKLP--SSFGNVTSLKELNLSGCS 763

Query:   101 AIEELPSSIECLSGLSALYLDHCXXXXXXXXXXXXXXXXXXIYLRWCSSLKSLPNELGNL 160
             ++ E+PSSI  +  L  +Y D C                  ++L  CSSL   P+ + NL
Sbjct:   764 SLLEIPSSIGNIVNLKKVYADGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNL 823

Query:   161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG--ITXXXXXXXXXXXXXXX 218
               L  LN  G       LS+V+L +   + NL SLYL+DC   +                
Sbjct:   824 TRLEDLNLSGC------LSLVKLPSIGNVINLQSLYLSDCSSLMELPFTIENATNLDTLY 877

Query:   219 XXXXXXXXRLPESIIHLSKLAYLKLSYCERLQSLPKL---PCNLSELDAHHCTALESSPG 275
                      LP SI +++ L  L L+ C  L+ LP L     NL  L    C++L   P 
Sbjct:   878 LDGCSNLLELPSSIWNITNLQSLYLNGCSSLKELPSLVENAINLQSLSLMKCSSLVELPS 937

Query:   276 LVFPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQVMAIARWKQLQEKVCCVF 329
              ++   +  Y D+ N   L   E+  +      +  ++     + L +++ C F
Sbjct:   938 SIWRISNLSYLDVSNCSSL--LELNLVSHPVVPDSLILDAGDCESLVQRLDCFF 989

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 94/344 (27%), Positives = 150/344 (43%)

Query:     1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP 60
             +P+  I++LW+  +   KLK +    S    K  N S  L+ + L  LNL  C SL  LP
Sbjct:   636 LPYSEIEELWEGAKDTQKLKWVDLSHSR---KLCNLSGLLNAESLQRLNLEGCTSLEELP 692

Query:    61 PGIFRLEFLKELDLWGCSKLKTLPEI-------------SS-------AGNIEVMYLNGT 100
               + R++ L  L++ GC+ L+ LP +             SS       + N+E ++L+GT
Sbjct:   693 REMKRMKSLIFLNMRGCTSLRVLPRMNLISLKTLILTNCSSIQKFQVISDNLETLHLDGT 752

Query:   101 AIEELPSSIECLSGLSALYLDHCXXXXXXXXXXXXXXXXXXIYLRWCSSLKSLPNELGNL 160
             AI +LP+ +  L  L  L L  C                  + L  CS LK+    +  +
Sbjct:   753 AIGKLPTDMVKLQKLIVLNLKDCKMLGAVPEFLGKLKALQELVLSGCSKLKTFSVPIETM 812

Query:   161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITXXXXXXXXXXXXXXXXX 220
             + L  L  +GTA++E+P  ++R N+   +++L  L     G++                 
Sbjct:   813 KCLQILLLDGTALKEMP-KLLRFNS-SRVEDLPELRRGINGLSSLRRLCLSRNNMIS--- 867

Query:   221 XXXXXXRLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALES--SPGLVF 278
                    L   I  L  L +L L YC+ L S+P LP NL  LDAH C  L++  SP  + 
Sbjct:   868 ------NLQIDINQLYHLKWLDLKYCKNLTSIPLLPPNLEILDAHGCEKLKTVASPMALL 921

Query:   279 PSRDP--QYFDLRNNLKLDRNEIREILEDAQQEIQVMAIARWKQ 320
                +     F   N   L++     I   AQ++ Q+ A   +K+
Sbjct:   922 KLMEQVQSKFIFTNCNNLEQVAKNSITSYAQRKSQLDARRCYKE 965

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 87/282 (30%), Positives = 124/282 (43%)

Query:     1 MPHGNIQQLWDSVQHNGKLKQI-ISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRIL 59
             + H  +  LW+ V+    L+Q+ +S + N   + P+ S  ++L KL+   L+NC SL  L
Sbjct:   660 LTHSKLDMLWEGVKPLHNLRQMDLSYSVNL-KELPDLSTAINLRKLI---LSNCSSLIKL 715

Query:    60 PPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA-IEELPSSIECLSGLSAL 118
             P  I     L++LDL GCS L  LP    A N++ + L   + + ELPSSI     L  L
Sbjct:   716 PSCIGNAINLEDLDLNGCSSLVELPSFGDAINLQKLLLRYCSNLVELPSSIGNAINLREL 775

Query:   119 YLDHCXXXXXXXXXXXXXXXXXXIYLRWCSSLKSLPNELGNLEALNSLNAEGTA-IREVP 177
              L +C                  + L  CS+L  LP+ +GN   L  L+    A + E+P
Sbjct:   776 DLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSSIGNAINLQKLDLRRCAKLLELP 835

Query:   178 LSIVRLNNFDGLQNLTSLYLTDCG--ITXXXXXXXXXXXXXXXXXXXXXXXRLPESIIHL 235
              SI    N   LQNL    L DC   +                         LP SI +L
Sbjct:   836 SSI---GNAINLQNLL---LDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIGNL 889

Query:   236 SKLAYLKLSYCERLQSLPKLPCNLSELDA---HHCTALESSP 274
              KL  L L  C +L+ LP +  NL  LD    + C+ L+  P
Sbjct:   890 QKLQELILKGCSKLEDLP-ININLESLDILVLNDCSMLKRFP 930

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 227 (85.0 bits), Expect = 1.8e-17, P = 1.8e-17
 Identities = 79/277 (28%), Positives = 123/277 (44%)

Query:     1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP 60
             M    +++LW+  +    LK +    S    + PN S   +L++L    L +C SL  LP
Sbjct:   700 MSFSKLRKLWEGTKQLRNLKWMDLSNSEDLKELPNLSTATNLEEL---KLRDCSSLVELP 756

Query:    61 PGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL-NGTAIEELPSSIECLSGLSALY 119
               I +L  L+ L L  CS L  LP   +A  +E +YL N +++E+LP SI   + L  L 
Sbjct:   757 SSIEKLTSLQRLYLQRCSSLVELPSFGNATKLEELYLENCSSLEKLPPSINA-NNLQQLS 815

Query:   120 LDHCXXXXXXXXXXXXXXXXXXIYLRWCSSLKSLPNELGNLEALNSLNAEG-TAIREVPL 178
             L +C                  + L  CSSL  LP  +G    L  LN  G +++ ++P 
Sbjct:   816 LINCSRVVELPAIENATNLQK-LDLGNCSSLIELPLSIGTATNLKELNISGCSSLVKLPS 874

Query:   179 SI---VRLNNFDGLQNLTSLYLTDCGITXXXXXXXXXXXXXXXXXXXXXXXRL-PESIIH 234
             SI     L  FD L N ++L      I                        ++  +    
Sbjct:   875 SIGDITNLKEFD-LSNCSNLVELPININLKFLDTLNLAGCSQLKSFPEISTKIFTDCYQR 933

Query:   235 LSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALE 271
             +S+L  L+++ C  L SLP+LP +L+ L A +C +LE
Sbjct:   934 MSRLRDLRINNCNNLVSLPQLPDSLAYLYADNCKSLE 970

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 2.9e-17, P = 2.9e-17
 Identities = 80/252 (31%), Positives = 117/252 (46%)

Query:    42 LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA 101
             L+KL+ LNL +C SLR LP GI + + L+ L L GCS LK  P IS   N+EV+ L+GT 
Sbjct:   689 LEKLIYLNLRDCTSLRSLPKGI-KTQSLQTLILSGCSSLKKFPLISE--NVEVLLLDGTV 745

Query:   102 IEELPSSIECLSGLSALYLDHCXXXXXXXXXXXXXXXXXXIYLRWCSSLKSLPNELGNLE 161
             I+ LP SI+    L+ L L +C                  + L  CS L+  P    ++E
Sbjct:   746 IKSLPESIQTFRRLALLNLKNCKKLKHLSSDLYKLKCLQELILSGCSQLEVFPEIKEDME 805

Query:   162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITXXXXX---XXXXXXXXXX 218
             +L  L  + T+I E+P  ++ L+N        SL  T   ++                  
Sbjct:   806 SLEILLMDDTSITEMP-KMMHLSNIKTF----SLCGTSSHVSVSMFFMPPTLGCSRLTDL 860

Query:   219 XXXXXXXXRLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSEL---DAHHCTALESSPG 275
                     +LP++I  LS L  L LS    +++LP+    L+ L   D   C  L+S P 
Sbjct:   861 YLSRCSLYKLPDNIGGLSSLQSLCLSG-NNIENLPESFNQLNNLKWFDLKFCKMLKSLP- 918

Query:   276 LVFPSRDPQYFD 287
              V P ++ QY D
Sbjct:   919 -VLP-QNLQYLD 928

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2024588 RLM1 "RESISTANCE TO LEPTOSPHAERIA MACULANS 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.2e-16, P = 1.2e-16
 Identities = 77/272 (28%), Positives = 121/272 (44%)

Query:    38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 97
             L    + LV L++ + + L  L PG   L  LK+L+L G   LK LP++S+A N+E++ L
Sbjct:   596 LKFRAENLVELDMKDSR-LEYLWPGTQLLTKLKKLNLEGSYNLKELPDLSNATNLEMLDL 654

Query:    98 NGT-AIEELPSSIECLSGLSALYLDHCXXXXXXXXXXXXXXXXXXIYLRWCSSLKSLPNE 156
             +   A+ ELPSSI+ L  L  +Y+D C                  +Y+  C  LK+ P  
Sbjct:   655 SVCLALAELPSSIKNLHKLDVIYMDLCESLHMIPTNINLASLET-MYMTGCPQLKTFPAF 713

Query:   157 LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITXXXXXXXXXXXXX 216
                ++ L  +    T + EVP SI   +       L  + L+  G               
Sbjct:   714 STKIKRLYLVR---TGVEEVPASITHCSR------LLKIDLS--GSRNLKSITHLPSSLQ 762

Query:   217 XXXXXXXXXXRLPESIIH-LSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPG 275
                        + +S I  L +L +L+L  C +L+SLP+LP +L  L A  C +LE    
Sbjct:   763 TLDLSSTDIEMIADSCIKDLQRLDHLRLCRCRKLKSLPELPASLRLLTAEDCESLER--- 819

Query:   276 LVFPSRDPQ-YFDLRNNLKLDRNEIREILEDA 306
             + +P   P    +  N LKL     R I++ +
Sbjct:   820 VTYPLNTPTGQLNFTNCLKLGEEAQRVIIQQS 851

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)]

 Score = 218 (81.8 bits), Expect = 1.6e-16, P = 1.6e-16
 Identities = 89/335 (26%), Positives = 150/335 (44%)

Query:     1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTL-HLDKLVNLNLNNCKSLRIL 59
             +P+  I+++W+  +   KLK +    S    K  N    L     L  LNL  C +L+ +
Sbjct:   644 LPYSEIERVWEDNKDAPKLKWVNLNHS----KKLNTLAGLGKAQNLQELNLEGCTALKEM 699

Query:    60 PPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSG-LSAL 118
                +  ++FL  L+L GC+ LK+LPEI    +++ + L+G +  +   + + +S  L AL
Sbjct:   700 HVDMENMKFLVFLNLRGCTSLKSLPEIQLI-SLKTLILSGCSKFK---TFQVISDKLEAL 755

Query:   119 YLDHCXXXXXXXXXXXXXXXXXXIYLRWCSSLKSLPNELGNLEALNSLNAEGTA-IREVP 177
             YLD                    + ++ C  LK LP+ LG L+AL  L   G + + E P
Sbjct:   756 YLDG-TAIKELPCDIGRLQRLVMLNMKGCKKLKRLPDSLGQLKALEELILSGCSKLNEFP 814

Query:   178 LSIVRLNNFDGLQNLTSLYLTDCGITXXXXXXXXXXXXXXXXXXXXXXXRLPESIIHLSK 237
                     +  +  L  L L +   T                       RLP+ +   S+
Sbjct:   815 ------ETWGNMSRLEILLLDE---TAIKDMPKILSVRRLCLNKNEKISRLPDLLNKFSQ 865

Query:   238 LAYLKLSYCERLQSLPKLPCNLSELDAHHCTALES-SPGLV--FPSRDPQY-FDLRNNLK 293
             L +L L YC+ L  +P+LP NL  L+ H C++L++ +  LV   P +     F   N  +
Sbjct:   866 LQWLHLKYCKNLTHVPQLPPNLQYLNVHGCSSLKTVAKPLVCSIPMKHVNSSFIFTNCNE 925

Query:   294 LDRNEIREILEDAQQEIQVMAIARWKQLQEKVCCV 328
             L++    EI+  A+++  ++A A  K+  E   CV
Sbjct:   926 LEQAAKEEIVVYAERKCHLLASAL-KRCDES--CV 957

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IMP

GO:0010114 "response to red light" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Al_scaffold_0008_340 annotation not avaliable (1184 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	329
PLN03210	1153	PLN03210, PLN03210, Resistant to P	9e-21
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-19
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-09
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	1e-08
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-06
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	4e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.001
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.004

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 93.0 bits (231), Expect = 9e-21
 Identities = 89/304 (29%), Positives = 133/304 (43%), Gaps = 70/304 (23%)

Query: 1   MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP 60
           M    +++LWD V     L+ I  R S    + P+ S+  +L+ L    L++C SL  LP
Sbjct: 618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETL---KLSDCSSLVELP 674

Query: 61  PGIFRLEFLKELD-----------------------LWGCSKLKTLPEISSAGNIEVMYL 97
             I  L  L++LD                       L GCS+LK+ P+IS+  NI  + L
Sbjct: 675 SSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIST--NISWLDL 732

Query: 98  NGTAIEELPSSI-----------ECLSG-------------------LSALYLDHCKRLK 127
           + TAIEE PS++           E  S                    L+ L+L     L 
Sbjct: 733 DETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLV 792

Query: 128 SLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNF- 186
            LPSS+  L  L  + +  C +L++LP  + NLE+L SL+  G +         RL  F 
Sbjct: 793 ELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS---------RLRTFP 842

Query: 187 DGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEK-NNFERLPESIIHLSKLAYLKLSY 245
           D   N++ L L+  GI E+P  + + S L  L +   NN +R+  +I  L  L  +  S 
Sbjct: 843 DISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSD 902

Query: 246 CERL 249
           C  L
Sbjct: 903 CGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 89.5 bits (222), Expect = 1e-19
 Identities = 62/188 (32%), Positives = 97/188 (51%), Gaps = 10/188 (5%)

Query: 7   QQLWDSVQHNGKLKQIISRASNFFTKSPNHSLT------LHLDKLVNLNLNNCKSLRILP 60
           ++LW+ VQ    L  ++S +      S   SL        +L KL +L + NC +L  LP
Sbjct: 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLP 819

Query: 61  PGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYL 120
            GI  LE L+ LDL GCS+L+T P+IS+  NI  + L+ T IEE+P  IE  S LS L +
Sbjct: 820 TGI-NLESLESLDLSGCSRLRTFPDIST--NISDLNLSRTGIEEVPWWIEKFSNLSFLDM 876

Query: 121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSL-KSLPNELGNLEALNSLNAEGTAIREVPLS 179
           + C  L+ +  ++ KLK L ++    C +L ++  N   +  A+ + N        V ++
Sbjct: 877 NGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTVCIN 936

Query: 180 IVRLNNFD 187
            +   N D
Sbjct: 937 FINCFNLD 944

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 58.0 bits (140), Expect = 3e-09
 Identities = 77/293 (26%), Positives = 116/293 (39%), Gaps = 67/293 (22%)

Query: 59  LPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSAL 118
           LPP   +L  L+    W    L+ +P      N+  + + G+ +E+L   +  L+GL  +
Sbjct: 587 LPP---KLRLLR----WDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNI 639

Query: 119 YLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEG-------- 170
            L   K LK +P  L    +L ++ L  CSSL  LP+ +  L  L  L+           
Sbjct: 640 DLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILP 698

Query: 171 TAIREVPLSIVRLNNFDGLQ-------NLTSLYLTDCGITELP-----ENLGQLSL---- 214
           T I    L  + L+    L+       N++ L L +  I E P     ENL +L L    
Sbjct: 699 TGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMK 758

Query: 215 ---------------------LLELYLEKN-NFERLPESIIHLSKLAYLKLSYCERLQSL 252
                                L  L+L    +   LP SI +L KL +L++  C  L++L
Sbjct: 759 SEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818

Query: 253 P---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREI 302
           P    L  +L  LD   C+ L +     FP       D    L L R  I E+
Sbjct: 819 PTGINLE-SLESLDLSGCSRLRT-----FPDISTNISD----LNLSRTGIEEV 861

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 57.9 bits (140), Expect = 3e-09
 Identities = 68/246 (27%), Positives = 114/246 (46%), Gaps = 25/246 (10%)

Query: 21  QIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80
           Q I+ ++N  +      +      L  LNL+N      +P G   +  L+ LDL      
Sbjct: 96  QTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--SIPNLETLDLSNNMLS 153

Query: 81  KTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKS 138
             +P +I S  +++V+ L G  +  ++P+S+  L+ L  L L   + +  +P  L ++KS
Sbjct: 154 GEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKS 213

Query: 139 LNSIYLRWCSSLKSLPNELGNLEALNSLN-AEGTAIREVPLSIVRLNNFD---------- 187
           L  IYL + +    +P E+G L +LN L+         +P S+  L N            
Sbjct: 214 LKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLS 273

Query: 188 --------GLQNLTSLYLTDCGIT-ELPENLGQLSLLLELYLEKNNFE-RLPESIIHLSK 237
                    LQ L SL L+D  ++ E+PE + QL  L  L+L  NNF  ++P ++  L +
Sbjct: 274 GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPR 333

Query: 238 LAYLKL 243
           L  L+L
Sbjct: 334 LQVLQL 339

Length = 968

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 64/207 (30%), Positives = 93/207 (44%), Gaps = 34/207 (16%)

Query: 51  NNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIE 110
           N   SL +LPPG+  L           + L  LP + S   +  +++ G  +  LP    
Sbjct: 252 NQLTSLPVLPPGLLELSIFS-------NPLTHLPALPSG--LCKLWIFGNQLTSLPVLPP 302

Query: 111 CLSGLSALYLDHCKRLKSLPSSLCKLKSLN----------------SIYLRWCSSLKSLP 154
            L  LS +  +    L +LPS LCKL + N                S+     +SL +LP
Sbjct: 303 GLQELS-VSDNQLASLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLP 361

Query: 155 NELGNLEALN----SLNAEGTAIREVPLSIVRLNNFDGL-QNLTSLYLTDCGITELPENL 209
           +EL  L A N    SL A  + ++E+ +S  RL +   L   L  L ++   +T LP   
Sbjct: 362 SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMVSGNRLTSLPM-- 419

Query: 210 GQLSLLLELYLEKNNFERLPESIIHLS 236
              S LL L + +N   RLPES+IHLS
Sbjct: 420 -LPSGLLSLSVYRNQLTRLPESLIHLS 445

Length = 788

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 54.9 bits (132), Expect = 3e-08
 Identities = 74/299 (24%), Positives = 114/299 (38%), Gaps = 94/299 (31%)

Query: 5   NIQQLWDSVQHNGKLKQI-ISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP--- 60
           ++ +L  S+Q+  KL+ + +SR  N           ++L  L  LNL+ C  L+  P   
Sbjct: 669 SLVELPSSIQYLNKLEDLDMSRCENL----EILPTGINLKSLYRLNLSGCSRLKSFPDIS 724

Query: 61  ----------------PGIFRLEFLKEL--------DLWGCSKLKT-LPEISSAGNIEVM 95
                           P   RLE L EL         LW   +  T L  + S     + 
Sbjct: 725 TNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLF 784

Query: 96  YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN 155
             +  ++ ELPSSI+ L  L  L +++C  L++LP+ +  L+SL S+ L  CS L++ P+
Sbjct: 785 LSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD 843

Query: 156 ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLL 215
              N+     LN   T I EVP  I                                   
Sbjct: 844 ISTNIS---DLNLSRTGIEEVPWWI----------------------------------- 865

Query: 216 LELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQ----SLPKLPCNLSELDAHHCTAL 270
                EK             S L++L ++ C  LQ    ++ KL  +L  +D   C AL
Sbjct: 866 -----EK------------FSNLSFLDMNGCNNLQRVSLNISKLK-HLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 47.7 bits (113), Expect = 4e-06
 Identities = 57/198 (28%), Positives = 89/198 (44%), Gaps = 12/198 (6%)

Query: 98  NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL 157
           +G +  +   ++  L  L +L L+   RL+S  S L +L +L S+ L   +++  +P  +
Sbjct: 78  SGISSLDGSENLLNLLPLPSLDLN-LNRLRSNISELLELTNLTSLDLD-NNNITDIPPLI 135

Query: 158 GNL-EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLL 216
           G L   L  L+     I  +P  +        L NL +L L+   +++LP+ L  LS L 
Sbjct: 136 GLLKSNLKELDLSDNKIESLPSPL------RNLPNLKNLDLSFNDLSDLPKLLSNLSNLN 189

Query: 217 ELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLP--CNLSELDAHHCTALESSP 274
            L L  N    LP  I  LS L  L LS    ++ L  L    NLS L+  +   LE  P
Sbjct: 190 NLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSN-NKLEDLP 248

Query: 275 GLVFPSRDPQYFDLRNNL 292
             +    + +  DL NN 
Sbjct: 249 ESIGNLSNLETLDLSNNQ 266

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.5 bits (88), Expect = 4e-04
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 191 NLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYC 246
           NL SL L++  +T +P+     L  L  L L  NN   + PE+   L  L  L LS  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.001
 Identities = 58/228 (25%), Positives = 88/228 (38%), Gaps = 18/228 (7%)

Query: 35  NHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEV 94
              + L    L  L+L++   +  LP  +  L  LK LDL           +S+  N+  
Sbjct: 132 PPLIGLLKSNLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190

Query: 95  MYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP 154
           + L+G  I +LP  IE LS L  L L +   +  L SSL  LK+L+ + L   + L+ LP
Sbjct: 191 LDLSGNKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELS-NNKLEDLP 248

Query: 155 NELGNLEALNSLNAEGTAIREVP---------------LSIVRLNNFDGLQNLTSLYLTD 199
             +GNL  L +L+     I  +                 S+        L  L    L +
Sbjct: 249 ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLN 308

Query: 200 CGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE 247
             +T     L   S+LL   +  N     PE++  L  L  L      
Sbjct: 309 LLLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWTLDNA 356

Length = 394

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 38.6 bits (89), Expect = 0.004
 Identities = 52/187 (27%), Positives = 79/187 (42%), Gaps = 33/187 (17%)

Query: 78  SKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLK 137
           + L +LP +     +  + ++G  +  LP     L  LS ++ +    L +LPS LCKL 
Sbjct: 232 NNLTSLPALPP--ELRTLEVSGNQLTSLPVLPPGLLELS-IFSNPLTHLPALPSGLCKL- 287

Query: 138 SLNSIYLRWC--SSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSL 195
                   W   + L SLP     L+ L+  + +  ++  +P  + +L  ++    LTSL
Sbjct: 288 --------WIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCKLWAYN--NQLTSL 337

Query: 196 YLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKL 255
                    LP  L +LS+        N    LP     L KL     +Y  RL SLP L
Sbjct: 338 -------PTLPSGLQELSV------SDNQLASLPTLPSELYKL----WAYNNRLTSLPAL 380

Query: 256 PCNLSEL 262
           P  L EL
Sbjct: 381 PSGLKEL 387

Length = 788

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	329
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.96
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.92
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.91
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.9
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.89
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.79
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.75
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.74
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.71
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.69
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.65
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.65
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.64
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.45
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.38
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.29
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.28
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.23
KOG4341	483	consensus F-box protein containing LRR [General fu	99.22
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.21
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.16
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.07
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.05
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.01
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.99
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.95
KOG4341	483	consensus F-box protein containing LRR [General fu	98.82
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.74
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.72
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.62
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.6
PLN03150	623	hypothetical protein; Provisional	98.6
PRK15386	426	type III secretion protein GogB; Provisional	98.58
PLN03150	623	hypothetical protein; Provisional	98.53
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.51
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.48
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.39
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.38
PRK15386	426	type III secretion protein GogB; Provisional	98.37
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.3
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.14
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.99
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.93
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.92
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.92
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.84
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.78
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.77
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.76
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.19
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.03
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.99
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.98
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.81
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.67
KOG3864	221	consensus Uncharacterized conserved protein [Funct	96.34
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.22
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.79
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.24
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.21
KOG3864	221	consensus Uncharacterized conserved protein [Funct	94.32
KOG4308	478	consensus LRR-containing protein [Function unknown	93.37
KOG4308	478	consensus LRR-containing protein [Function unknown	93.25
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.25
smart00370	26	LRR Leucine-rich repeats, outliers.	92.25
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	89.62
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	83.3
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	81.82
PF07725	20	LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Le	80.33

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.96  E-value=3.1e-28  Score=240.98  Aligned_cols=275  Identities=22%  Similarity=0.220  Sum_probs=123.1

Q ss_pred             hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCC
Q 020238           10 WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISS   88 (329)
Q Consensus        10 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~   88 (329)
                      |..+..+++|++|++++|......|.  .+.++++|++|++++|.+.+.+|..+..+++|++|++++|.+...+| .+..
T Consensus       157 p~~~~~l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        157 PNDIGSFSSLKVLDLGGNVLVGKIPN--SLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             ChHHhcCCCCCEEECccCcccccCCh--hhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            34444445555555554443333333  34444455555555444444444444444455555555444433333 2333


Q ss_pred             CCCccEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEe
Q 020238           89 AGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLN  167 (329)
Q Consensus        89 ~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  167 (329)
                      +++|+.|++++|.+. .+|..++.+++|++|++++|.+....|..+.++++|++|++++|...+.+|..+.++++|+.|+
T Consensus       235 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  314 (968)
T PLN00113        235 LTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH  314 (968)
T ss_pred             CCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence            345555555544443 3444444455555555554444444444444444555555554444444444444444555555


Q ss_pred             ccCccccc-cChhhhhccccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCc-cCChh-------------
Q 020238          168 AEGTAIRE-VPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFE-RLPES-------------  231 (329)
Q Consensus       168 l~~~~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~-~~~~~-------------  231 (329)
                      +++|.+.. .|..      +..+++|+.|++++|.+++ +|..++.+++|+.|++++|+++ .+|..             
T Consensus       315 l~~n~~~~~~~~~------~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~  388 (968)
T PLN00113        315 LFSNNFTGKIPVA------LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF  388 (968)
T ss_pred             CCCCccCCcCChh------HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECc
Confidence            55444432 1111      2334445555555554442 4444444444444444444443 23333             


Q ss_pred             -----------hhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238          232 -----------IIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       232 -----------l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~  292 (329)
                                 +..+++|+.|++++|.....+|.   .+++|+.|++++|...+.++.....+++|+.|++++|.
T Consensus       389 ~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~  463 (968)
T PLN00113        389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK  463 (968)
T ss_pred             CCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence                       33334444444444333322331   22344444454444433344434444555666666554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=2e-27  Score=235.29  Aligned_cols=289  Identities=20%  Similarity=0.226  Sum_probs=202.6

Q ss_pred             CCCchh-hhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            2 PHGNIQ-QLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         2 ~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      ++|++. .+|..+..+++|++|++++|......|.  .+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.
T Consensus       172 ~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  249 (968)
T PLN00113        172 GGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPR--ELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLT  249 (968)
T ss_pred             ccCcccccCChhhhhCcCCCeeeccCCCCcCcCCh--HHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceec
Confidence            455554 4566777888888888888875555554  6777788888888887777777777777788888888777666


Q ss_pred             CCCc-ccCCCCCccEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccC
Q 020238           81 KTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELG  158 (329)
Q Consensus        81 ~~~~-~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  158 (329)
                      +.+| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+...+|..+.++++|+.|++++|...+..|..+.
T Consensus       250 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~  329 (968)
T PLN00113        250 GPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALT  329 (968)
T ss_pred             cccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHh
Confidence            5555 4455577777777777665 4566666677777777777666555666666666666666666665555555556


Q ss_pred             CCccCcEEeccCcccc-ccChhhhhcc------------------ccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEE
Q 020238          159 NLEALNSLNAEGTAIR-EVPLSIVRLN------------------NFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLEL  218 (329)
Q Consensus       159 ~l~~L~~L~l~~~~l~-~~~~~~~~~~------------------~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L  218 (329)
                      .+++|+.|++++|.+. .+|..+....                  .+..+++|+.|++++|.+.+ +|..+..+++|+.|
T Consensus       330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L  409 (968)
T PLN00113        330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV  409 (968)
T ss_pred             cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence            6666666666666554 2332221100                  02234556666666666654 66677889999999


Q ss_pred             EcCCCcCc-cCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcc
Q 020238          219 YLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLK  293 (329)
Q Consensus       219 ~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~  293 (329)
                      ++++|+++ .+|..+..++.|+.+++++|.....++.   .+++|+.|++++|...+.+|... ....|+.|++++|..
T Consensus       410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l  487 (968)
T PLN00113        410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQF  487 (968)
T ss_pred             ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCcc
Confidence            99999998 7788899999999999999886665553   46899999999999877776654 457899999999854

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.92  E-value=1.7e-26  Score=201.29  Aligned_cols=286  Identities=21%  Similarity=0.183  Sum_probs=171.9

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      |.+|.++.+|.......+|+.|+|.+|. +..... ..+..++-|+.|||+.|.+...--..|..-.++++|++++|.+.
T Consensus       109 l~~N~Lt~IP~f~~~sghl~~L~L~~N~-I~sv~s-e~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It  186 (873)
T KOG4194|consen  109 LNKNELTRIPRFGHESGHLEKLDLRHNL-ISSVTS-EELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT  186 (873)
T ss_pred             eccchhhhcccccccccceeEEeeeccc-cccccH-HHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc
Confidence            3456677777666666667777777665 332221 14555666666666665544322222333355666666665544


Q ss_pred             CC-CcccCCCCCccEEEecCccccccchh-hhcCCCCCEEEcCCCC------------------------CcccCCcccc
Q 020238           81 KT-LPEISSAGNIEVMYLNGTAIEELPSS-IECLSGLSALYLDHCK------------------------RLKSLPSSLC  134 (329)
Q Consensus        81 ~~-~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~------------------------~~~~~~~~~~  134 (329)
                      .. ...+..+.+|..|.+++|+|+.+|.. |.++++|+.|++..|.                        +..--..+|.
T Consensus       187 ~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy  266 (873)
T KOG4194|consen  187 TLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFY  266 (873)
T ss_pred             ccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCccee
Confidence            22 12344444555555555555555432 3335555555555543                        3222233455


Q ss_pred             CCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCC
Q 020238          135 KLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLS  213 (329)
Q Consensus       135 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~  213 (329)
                      .+.+++.|++..|+....-..++.+++.|+.|+++.|.|+.+....     +..++.|+.|++++|.++.+++ .+..+.
T Consensus       267 ~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~-----WsftqkL~~LdLs~N~i~~l~~~sf~~L~  341 (873)
T KOG4194|consen  267 GLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDS-----WSFTQKLKELDLSSNRITRLDEGSFRVLS  341 (873)
T ss_pred             eecccceeecccchhhhhhcccccccchhhhhccchhhhheeecch-----hhhcccceeEeccccccccCChhHHHHHH
Confidence            5666666666666555555556667777777777777776554333     4456777777777777777654 355567


Q ss_pred             CccEEEcCCCcCccCC-hhhhcCCccceecccccccccccC------CCCCCccEEeccCCCCCcCCC-CCCCCCCCCcE
Q 020238          214 LLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP------KLPCNLSELDAHHCTALESSP-GLVFPSRDPQY  285 (329)
Q Consensus       214 ~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~------~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~  285 (329)
                      .|++|+|++|.++.+. .++..+++|++|+|++|..--.+.      ..+++|+.|.+.+|. +..++ ..+..+..|++
T Consensus       342 ~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNq-lk~I~krAfsgl~~LE~  420 (873)
T KOG4194|consen  342 QLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQ-LKSIPKRAFSGLEALEH  420 (873)
T ss_pred             HhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCce-eeecchhhhccCcccce
Confidence            7777777777777555 345667788888888766432221      346789999998877 56665 45567788999


Q ss_pred             EEcCCCccc
Q 020238          286 FDLRNNLKL  294 (329)
Q Consensus       286 L~i~~~~~l  294 (329)
                      ||+.++...
T Consensus       421 LdL~~Naia  429 (873)
T KOG4194|consen  421 LDLGDNAIA  429 (873)
T ss_pred             ecCCCCcce
Confidence            999888644

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.91  E-value=2e-25  Score=194.67  Aligned_cols=287  Identities=20%  Similarity=0.201  Sum_probs=213.9

Q ss_pred             CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      +++|.+..+ +.+|.++|+|+.+.+.+|. ++.+|.  ......+|+.|+|.+|.+...-.+.+..++.|+.||++.|.+
T Consensus        85 lsnNkl~~id~~~f~nl~nLq~v~l~~N~-Lt~IP~--f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~i  161 (873)
T KOG4194|consen   85 LSNNKLSHIDFEFFYNLPNLQEVNLNKNE-LTRIPR--FGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLI  161 (873)
T ss_pred             ccccccccCcHHHHhcCCcceeeeeccch-hhhccc--ccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchh
Confidence            467777776 5668899999999999998 888887  455566899999999988777777788899999999999765


Q ss_pred             CC-CCcccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCccc
Q 020238           80 LK-TLPEISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL  157 (329)
Q Consensus        80 ~~-~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  157 (329)
                      .. ..+.+....++++|+++.|.|+.+. ..|..+.+|..|.++.|.+.+..+..|.++++|+.|++..|++...-...|
T Consensus       162 s~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltF  241 (873)
T KOG4194|consen  162 SEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTF  241 (873)
T ss_pred             hcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhh
Confidence            42 2345666689999999999999664 457788899999999988776666778889999999998876544334456


Q ss_pred             CCCccCcEEeccCccccccChhhh-hcc------------------ccCCCCCccEEEcCCCCCCCc-chhhcCCCCccE
Q 020238          158 GNLEALNSLNAEGTAIREVPLSIV-RLN------------------NFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLE  217 (329)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~~~~~~-~~~------------------~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~  217 (329)
                      .++++|+.|.+..|.+..+..... .+.                  -+-++++|++|++++|.+..+ ++.+..++.|+.
T Consensus       242 qgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~  321 (873)
T KOG4194|consen  242 QGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKE  321 (873)
T ss_pred             cCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccccee
Confidence            667777777666666654433220 000                  044566677777777766663 445667888888


Q ss_pred             EEcCCCcCccCC-hhhhcCCccceecccccccccccC----CCCCCccEEeccCCCC---CcCCCCCCCCCCCCcEEEcC
Q 020238          218 LYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTA---LESSPGLVFPSRDPQYFDLR  289 (329)
Q Consensus       218 L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~---l~~~~~~~~~~~~L~~L~i~  289 (329)
                      |+|+.|+|++++ .++..+..|+.|+|++|. +..+.    ...++|+.|++++|..   +++....+..++.|+.|++-
T Consensus       322 LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~  400 (873)
T KOG4194|consen  322 LDLSSNRITRLDEGSFRVLSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLT  400 (873)
T ss_pred             EeccccccccCChhHHHHHHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeec
Confidence            888888888776 567778888888888855 44444    3457999999999875   34444555567889999998


Q ss_pred             CC
Q 020238          290 NN  291 (329)
Q Consensus       290 ~~  291 (329)
                      |+
T Consensus       401 gN  402 (873)
T KOG4194|consen  401 GN  402 (873)
T ss_pred             Cc
Confidence            86

>PLN03210 Resistant to P

Probab=99.91  E-value=1.1e-22  Score=202.57  Aligned_cols=279  Identities=32%  Similarity=0.461  Sum_probs=208.2

Q ss_pred             hhhccCCC-CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCC
Q 020238           10 WDSVQHNG-KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISS   88 (329)
Q Consensus        10 ~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   88 (329)
                      |.++..+| +|+.|.+.++. +...|.  .+ ...+|++|++.++. ...++..+..+++|+.|+++++..+..+|.+..
T Consensus       581 p~~~~~lp~~Lr~L~~~~~~-l~~lP~--~f-~~~~L~~L~L~~s~-l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~  655 (1153)
T PLN03210        581 PEGFDYLPPKLRLLRWDKYP-LRCMPS--NF-RPENLVKLQMQGSK-LEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM  655 (1153)
T ss_pred             CcchhhcCcccEEEEecCCC-CCCCCC--cC-CccCCcEEECcCcc-ccccccccccCCCCCEEECCCCCCcCcCCcccc
Confidence            33444443 46666666654 455554  23 46789999999876 455777788899999999999888888888888


Q ss_pred             CCCccEEEecCc-cccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEe
Q 020238           89 AGNIEVMYLNGT-AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLN  167 (329)
Q Consensus        89 ~~~L~~L~l~~~-~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  167 (329)
                      +++|+.|++.+| .+..+|..+..+++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|..   ..+|+.|+
T Consensus       656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~  731 (1153)
T PLN03210        656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLD  731 (1153)
T ss_pred             CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeee
Confidence            899999999875 456888889999999999999998888888766 6889999999999877776643   35788888


Q ss_pred             ccCccccccChhhh--hccc----------------------cCCCCCccEEEcCCCC-CCCcchhhcCCCCccEEEcCC
Q 020238          168 AEGTAIREVPLSIV--RLNN----------------------FDGLQNLTSLYLTDCG-ITELPENLGQLSLLLELYLEK  222 (329)
Q Consensus       168 l~~~~l~~~~~~~~--~~~~----------------------~~~~~~L~~L~l~~~~-l~~~~~~~~~~~~L~~L~l~~  222 (329)
                      ++++.+..+|..+.  .+..                      ....++|+.|++++|. +..+|..++.+++|+.|++++
T Consensus       732 L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~  811 (1153)
T PLN03210        732 LDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIEN  811 (1153)
T ss_pred             cCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCC
Confidence            88888877664321  0000                      1123578889999884 455888899999999999998


Q ss_pred             C-cCccCChhhhcCCccceecccccccccccCCC-----------------------CCCccEEeccCCCCCcCCCCCCC
Q 020238          223 N-NFERLPESIIHLSKLAYLKLSYCERLQSLPKL-----------------------PCNLSELDAHHCTALESSPGLVF  278 (329)
Q Consensus       223 ~-~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~-----------------------~~~L~~L~l~~c~~l~~~~~~~~  278 (329)
                      | .+..+|... .+++|+.|++++|..+..+|..                       +++|+.|++++|+.++.++....
T Consensus       812 C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~  890 (1153)
T PLN03210        812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNIS  890 (1153)
T ss_pred             CCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccc
Confidence            8 566777654 6788888888888776655432                       35677777777777777777667


Q ss_pred             CCCCCcEEEcCCCcccchhH
Q 020238          279 PSRDPQYFDLRNNLKLDRNE  298 (329)
Q Consensus       279 ~~~~L~~L~i~~~~~l~~~~  298 (329)
                      .++.|+.+++++|.+++...
T Consensus       891 ~L~~L~~L~l~~C~~L~~~~  910 (1153)
T PLN03210        891 KLKHLETVDFSDCGALTEAS  910 (1153)
T ss_pred             cccCCCeeecCCCccccccc
Confidence            77778888888888776543

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.91  E-value=1.2e-22  Score=202.45  Aligned_cols=282  Identities=27%  Similarity=0.420  Sum_probs=216.0

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      |++++++.+|.++..+++|+.|+++++..+...|.   +..+++|++|++++|.....+|..+..+++|+.|++++|..+
T Consensus       618 L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        618 MQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             CcCccccccccccccCCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence            56789999999999999999999999887777774   667899999999999988889999999999999999999888


Q ss_pred             CCCcccCCCCCccEEEecCccc-cccchhhhcCCCCCEEEcCCCCCcccCCcc---------------------------
Q 020238           81 KTLPEISSAGNIEVMYLNGTAI-EELPSSIECLSGLSALYLDHCKRLKSLPSS---------------------------  132 (329)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~~~i-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~---------------------------  132 (329)
                      ..+|....+++|+.|++++|.. ..+|..   ..+|+.|++++|.+ ..+|..                           
T Consensus       695 ~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i-~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~  770 (1153)
T PLN03210        695 EILPTGINLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAI-EEFPSNLRLENLDELILCEMKSEKLWERVQPLT  770 (1153)
T ss_pred             CccCCcCCCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCcc-ccccccccccccccccccccchhhccccccccc
Confidence            7777655667888888876642 233321   34566666666542 222211                           


Q ss_pred             ---ccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc-cccccChhhhhccccCCCCCccEEEcCCCC-CCCcch
Q 020238          133 ---LCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT-AIREVPLSIVRLNNFDGLQNLTSLYLTDCG-ITELPE  207 (329)
Q Consensus       133 ---~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~  207 (329)
                         ...+++|+.|++++|.....+|..+.++++|+.|++++| .+..+|...       .+++|+.|++++|. +..+|.
T Consensus       771 ~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-------~L~sL~~L~Ls~c~~L~~~p~  843 (1153)
T PLN03210        771 PLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-------NLESLESLDLSGCSRLRTFPD  843 (1153)
T ss_pred             hhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-------CccccCEEECCCCCccccccc
Confidence               112357888999988888888988999999999999886 466666432       47899999999984 444554


Q ss_pred             hhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCC-------
Q 020238          208 NLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLV-------  277 (329)
Q Consensus       208 ~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~-------  277 (329)
                      .   .++|+.|++++|.++.+|..+..+++|+.|++++|+.++.+|.   .+++|+.+++++|..+..++-..       
T Consensus       844 ~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~  920 (1153)
T PLN03210        844 I---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAM  920 (1153)
T ss_pred             c---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhh
Confidence            2   4689999999999999999999999999999999999998884   45788999999999887553211       


Q ss_pred             ------CCCCCCcEEEcCCCcccchhHH
Q 020238          278 ------FPSRDPQYFDLRNNLKLDRNEI  299 (329)
Q Consensus       278 ------~~~~~L~~L~i~~~~~l~~~~~  299 (329)
                            ...+....+.+.+|.++...+.
T Consensus       921 ~~~n~~~~~p~~~~l~f~nC~~L~~~a~  948 (1153)
T PLN03210        921 ATDNIHSKLPSTVCINFINCFNLDQEAL  948 (1153)
T ss_pred             hcccccccCCchhccccccccCCCchhh
Confidence                  1112234568889988875553

syringae 6; Provisional

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.90  E-value=4.1e-26  Score=200.77  Aligned_cols=284  Identities=24%  Similarity=0.315  Sum_probs=165.6

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCC-cccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNF-FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      .+|+++++-..++.+|.|+.+++..|+. -+.+|.  .+..+..|+.||+++|. ++.+|..+..-+++-+|++++|++-
T Consensus        63 ~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~--diF~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~N~Ie  139 (1255)
T KOG0444|consen   63 AHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPT--DIFRLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSYNNIE  139 (1255)
T ss_pred             hhhhhHhhhhhhccchhhHHHhhhccccccCCCCc--hhcccccceeeecchhh-hhhcchhhhhhcCcEEEEcccCccc
Confidence            3555555555555666666666655541 223333  56667777777777754 4556666666667777777776543


Q ss_pred             CCCc--ccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCC----------
Q 020238           81 KTLP--EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCS----------  148 (329)
Q Consensus        81 ~~~~--~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~----------  148 (329)
                       .+|  -+.++..|-.|++++|++..+|+.+..+.+|+.|.+++|.+...--..+..+++|++|.+++.+          
T Consensus       140 -tIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl  218 (1255)
T KOG0444|consen  140 -TIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL  218 (1255)
T ss_pred             -cCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCch
Confidence             333  2344466667788888887788877778888888888775432211222233344444444322          


Q ss_pred             --------------CCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCC
Q 020238          149 --------------SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSL  214 (329)
Q Consensus       149 --------------~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~  214 (329)
                                    ....+|..+.++++|+.|++++|.++.+....      ....+|+.|+++.|+++.+|.++..++.
T Consensus       219 d~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~------~~W~~lEtLNlSrNQLt~LP~avcKL~k  292 (1255)
T KOG0444|consen  219 DDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTE------GEWENLETLNLSRNQLTVLPDAVCKLTK  292 (1255)
T ss_pred             hhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeeccH------HHHhhhhhhccccchhccchHHHhhhHH
Confidence                          22233444444445555555555544433222      1124455555555555555555555555


Q ss_pred             ccEEEcCCCcCc--cCChhhhcCCccceecccccccccccCCC---CCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcC
Q 020238          215 LLELYLEKNNFE--RLPESIIHLSKLAYLKLSYCERLQSLPKL---PCNLSELDAHHCTALESSPGLVFPSRDPQYFDLR  289 (329)
Q Consensus       215 L~~L~l~~~~i~--~~~~~l~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~  289 (329)
                      |++|.+.+|+++  .+|+.++.+..|+.+..++ +.+.-+|+.   +..|+.|.++.|. +-.+|+.+--++.|..||+.
T Consensus       293 L~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL~~l~vLDlr  370 (1255)
T KOG0444|consen  293 LTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLLPDLKVLDLR  370 (1255)
T ss_pred             HHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccc-eeechhhhhhcCCcceeecc
Confidence            666655555544  5555566666666665555 335556643   3578888887766 44577777777888999999


Q ss_pred             CCcccchh
Q 020238          290 NNLKLDRN  297 (329)
Q Consensus       290 ~~~~l~~~  297 (329)
                      .++++-.-
T Consensus       371 eNpnLVMP  378 (1255)
T KOG0444|consen  371 ENPNLVMP  378 (1255)
T ss_pred             CCcCccCC
Confidence            99988543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.89  E-value=2.5e-25  Score=186.15  Aligned_cols=283  Identities=29%  Similarity=0.385  Sum_probs=156.4

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      .+|++.++|..+..+.++..+++.+++ +...+.  ..-.|+.|++||...|. .+.+|..++.+..|+.|++..|.+ .
T Consensus       145 ~~N~i~slp~~~~~~~~l~~l~~~~n~-l~~l~~--~~i~m~~L~~ld~~~N~-L~tlP~~lg~l~~L~~LyL~~Nki-~  219 (565)
T KOG0472|consen  145 TNNQISSLPEDMVNLSKLSKLDLEGNK-LKALPE--NHIAMKRLKHLDCNSNL-LETLPPELGGLESLELLYLRRNKI-R  219 (565)
T ss_pred             cccccccCchHHHHHHHHHHhhccccc-hhhCCH--HHHHHHHHHhcccchhh-hhcCChhhcchhhhHHHHhhhccc-c
Confidence            356677777666667677777777766 444443  22336777777776643 556677777777777777777543 3


Q ss_pred             CCcccCCCCCccEEEecCccccccchhhh-cCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238           82 TLPEISSAGNIEVMYLNGTAIEELPSSIE-CLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL  160 (329)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  160 (329)
                      .+|+|.++..|++++++.|.++.+|.... .++++..|++..|. +++.|..+..+.+|..|++++|. +..+|..++++
T Consensus       220 ~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl  297 (565)
T KOG0472|consen  220 FLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL  297 (565)
T ss_pred             cCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCc-cccCCcccccc
Confidence            44455444444444444444444443332 34444444444433 33344444444444444444422 22334444444


Q ss_pred             ccCcEEeccCccc-----------------------------------------------------------------cc
Q 020238          161 EALNSLNAEGTAI-----------------------------------------------------------------RE  175 (329)
Q Consensus       161 ~~L~~L~l~~~~l-----------------------------------------------------------------~~  175 (329)
                       .|++|.+.||.+                                                                 +.
T Consensus       298 -hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~  376 (565)
T KOG0472|consen  298 -HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTL  376 (565)
T ss_pred             -eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccccccccc
Confidence             444444444333                                                                 33


Q ss_pred             cChhhhhccc--------------------------------------------cCCCCCccEEEcCCCCCCCcchhhcC
Q 020238          176 VPLSIVRLNN--------------------------------------------FDGLQNLTSLYLTDCGITELPENLGQ  211 (329)
Q Consensus       176 ~~~~~~~~~~--------------------------------------------~~~~~~L~~L~l~~~~l~~~~~~~~~  211 (329)
                      +|.+++....                                            +..++.|..|++++|-+.++|..++.
T Consensus       377 VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~  456 (565)
T KOG0472|consen  377 VPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGS  456 (565)
T ss_pred             CCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhh
Confidence            3322211000                                            33344555555555555555555555


Q ss_pred             CCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCC----CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEE
Q 020238          212 LSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK----LPCNLSELDAHHCTALESSPGLVFPSRDPQYFD  287 (329)
Q Consensus       212 ~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~  287 (329)
                      +..|+.|+++.|++..+|+.+-.+..++.+-.+ +..++.+++    .+.+|..|++.+|. ++.+|+.++.+.+|++|+
T Consensus       457 lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas-~nqi~~vd~~~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLe  534 (565)
T KOG0472|consen  457 LVRLQTLNLSFNRFRMLPECLYELQTLETLLAS-NNQIGSVDPSGLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLE  534 (565)
T ss_pred             hhhhheecccccccccchHHHhhHHHHHHHHhc-cccccccChHHhhhhhhcceeccCCCc-hhhCChhhccccceeEEE
Confidence            555555555555555555444333333333322 234444542    35789999998877 788999999999999999


Q ss_pred             cCCCccc
Q 020238          288 LRNNLKL  294 (329)
Q Consensus       288 i~~~~~l  294 (329)
                      ++|+|.=
T Consensus       535 L~gNpfr  541 (565)
T KOG0472|consen  535 LDGNPFR  541 (565)
T ss_pred             ecCCccC
Confidence            9999754

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.89  E-value=5.8e-25  Score=193.62  Aligned_cols=276  Identities=25%  Similarity=0.383  Sum_probs=227.0

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      ||+|+++.+|.++.+.+++..|+|++|+ +..+|.. .+-++..|-.||+++|. +..+|..+..+..|++|++++|...
T Consensus       110 LShNqL~EvP~~LE~AKn~iVLNLS~N~-IetIPn~-lfinLtDLLfLDLS~Nr-Le~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  110 LSHNQLREVPTNLEYAKNSIVLNLSYNN-IETIPNS-LFINLTDLLFLDLSNNR-LEMLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             cchhhhhhcchhhhhhcCcEEEEcccCc-cccCCch-HHHhhHhHhhhccccch-hhhcCHHHHHHhhhhhhhcCCChhh
Confidence            6889999999999999999999999987 8888874 67788888999999966 6678888899999999999998754


Q ss_pred             CC-CcccCCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCccc
Q 020238           81 KT-LPEISSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL  157 (329)
Q Consensus        81 ~~-~~~~~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  157 (329)
                      .. +..+..+..|+.|.++++.-+  .+|..+..+.+|+.++++.|. +..+|..+.++++|+.|++++|.+. .+.-..
T Consensus       187 hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~-Lp~vPecly~l~~LrrLNLS~N~it-eL~~~~  264 (1255)
T KOG0444|consen  187 HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN-LPIVPECLYKLRNLRRLNLSGNKIT-ELNMTE  264 (1255)
T ss_pred             HHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC-CCcchHHHhhhhhhheeccCcCcee-eeeccH
Confidence            22 234455677888899987654  789999999999999999966 6778888899999999999996554 444455


Q ss_pred             CCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC--CcchhhcCCCCccEEEcCCCcCccCChhhhcC
Q 020238          158 GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT--ELPENLGQLSLLLELYLEKNNFERLPESIIHL  235 (329)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~  235 (329)
                      ..+.+|++|+++.|++..+|..++.      ++.|+.|.+.+|+++  ++|..++.+.+|+.+..++|.+.-+|+.+.+|
T Consensus       265 ~~W~~lEtLNlSrNQLt~LP~avcK------L~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC  338 (1255)
T KOG0444|consen  265 GEWENLETLNLSRNQLTVLPDAVCK------LTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRC  338 (1255)
T ss_pred             HHHhhhhhhccccchhccchHHHhh------hHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhh
Confidence            6778999999999999999988754      678899999999766  69999999999999999999999999999999


Q ss_pred             CccceecccccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEc
Q 020238          236 SKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDL  288 (329)
Q Consensus       236 ~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i  288 (329)
                      .+|+.|.+++|+.++ +|   ..++.|+.|++..|+.+..-|...-..+.++.-+|
T Consensus       339 ~kL~kL~L~~NrLiT-LPeaIHlL~~l~vLDlreNpnLVMPPKP~da~~~lefYNI  393 (1255)
T KOG0444|consen  339 VKLQKLKLDHNRLIT-LPEAIHLLPDLKVLDLRENPNLVMPPKPNDARKKLEFYNI  393 (1255)
T ss_pred             HHHHHhcccccceee-chhhhhhcCCcceeeccCCcCccCCCCcchhhhcceeeec
Confidence            999999999877654 56   45688999999999988766655544455655433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.87  E-value=5.2e-25  Score=184.23  Aligned_cols=233  Identities=25%  Similarity=0.348  Sum_probs=159.4

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCc-----------------------ccCcEEeccCCCCCcc
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHL-----------------------DKLVNLNLNNCKSLRI   58 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----------------------~~L~~L~l~~~~~~~~   58 (329)
                      ++|+++.+-+.+..+..+..++++.++ ....|.  .++.+                       +.++.++.++|.. ..
T Consensus        53 s~N~l~~l~~dl~nL~~l~vl~~~~n~-l~~lp~--aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~-~e  128 (565)
T KOG0472|consen   53 SHNDLEVLREDLKNLACLTVLNVHDNK-LSQLPA--AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL-KE  128 (565)
T ss_pred             ccCchhhccHhhhcccceeEEEeccch-hhhCCH--HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce-ee
Confidence            455555555555555555555555554 444443  34444                       4444444444332 23


Q ss_pred             cCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCC
Q 020238           59 LPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKS  138 (329)
Q Consensus        59 ~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  138 (329)
                      +++.++.+..++.++..+|++....+++..+.++..+++.++.+.++|+..-.++.|++++... +.++.+|+.++.+.+
T Consensus       129 l~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~-N~L~tlP~~lg~l~~  207 (565)
T KOG0472|consen  129 LPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS-NLLETLPPELGGLES  207 (565)
T ss_pred             cCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch-hhhhcCChhhcchhh
Confidence            4444455555555555555555444455555566666666666666665555567777777766 446677777778888


Q ss_pred             CcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEE
Q 020238          139 LNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLEL  218 (329)
Q Consensus       139 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L  218 (329)
                      |..|++..| .+..+| .|.++..|+.++++.|.+..+|.+.     .+.++++..||+.+|++++.|+.+.-+++|.+|
T Consensus       208 L~~LyL~~N-ki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~-----~~~L~~l~vLDLRdNklke~Pde~clLrsL~rL  280 (565)
T KOG0472|consen  208 LELLYLRRN-KIRFLP-EFPGCSLLKELHVGENQIEMLPAEH-----LKHLNSLLVLDLRDNKLKEVPDEICLLRSLERL  280 (565)
T ss_pred             hHHHHhhhc-ccccCC-CCCccHHHHHHHhcccHHHhhHHHH-----hcccccceeeeccccccccCchHHHHhhhhhhh
Confidence            888888774 344556 6778888888888888888777776     567889999999999999999999999999999


Q ss_pred             EcCCCcCccCChhhhcCCccceecccccc
Q 020238          219 YLEKNNFERLPESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       219 ~l~~~~i~~~~~~l~~~~~L~~L~l~~~~  247 (329)
                      |+++|.|+.+|..++++ .|+.|-+.||+
T Consensus       281 DlSNN~is~Lp~sLgnl-hL~~L~leGNP  308 (565)
T KOG0472|consen  281 DLSNNDISSLPYSLGNL-HLKFLALEGNP  308 (565)
T ss_pred             cccCCccccCCcccccc-eeeehhhcCCc
Confidence            99999999999888888 88888888776

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=7.8e-20  Score=171.13  Aligned_cols=255  Identities=23%  Similarity=0.287  Sum_probs=189.9

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      |++++++++|..+.  ++|+.|++.+|+ ++.+|.     ..++|++|++++|.+. .+|..   .++|+.|++++|.+.
T Consensus       208 Ls~~~LtsLP~~l~--~~L~~L~L~~N~-Lt~LP~-----lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~  275 (788)
T PRK15387        208 VGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT  275 (788)
T ss_pred             cCCCCCCcCCcchh--cCCCEEEccCCc-CCCCCC-----CCCCCcEEEecCCccC-cccCc---ccccceeeccCCchh
Confidence            46778888887765  489999999876 666664     2578999999998654 45542   367889999987643


Q ss_pred             CCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238           81 KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL  160 (329)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  160 (329)
                       .+|.+  ..+|+.|++++|.+..+|..   .++|+.|++++|.+.. +|..   ..+|+.|++++|.+. .+|..   .
T Consensus       276 -~Lp~l--p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~LP~l---p  341 (788)
T PRK15387        276 -HLPAL--PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-SLPTL---P  341 (788)
T ss_pred             -hhhhc--hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCC---cccccccccccCccc-ccccc---c
Confidence             44432  25788899999988877753   4789999999987543 4432   345778888886554 45532   2


Q ss_pred             ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccce
Q 020238          161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAY  240 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~  240 (329)
                      .+|+.|++++|.+..+|..         .++|+.|++++|.++.+|..   ..+|+.|++++|+++.+|..   .++|+.
T Consensus       342 ~~Lq~LdLS~N~Ls~LP~l---------p~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l---~s~L~~  406 (788)
T PRK15387        342 SGLQELSVSDNQLASLPTL---------PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL---PSELKE  406 (788)
T ss_pred             cccceEecCCCccCCCCCC---------CcccceehhhccccccCccc---ccccceEEecCCcccCCCCc---ccCCCE
Confidence            4789999999998887742         25788889999988887753   35789999999999888743   367899


Q ss_pred             ecccccccccccCCCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchhHH
Q 020238          241 LKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEI  299 (329)
Q Consensus       241 L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~~~  299 (329)
                      |++++|. ++.+|..+.+|+.|++++|. ++.+|..+..++.|+.|++++|+ ++....
T Consensus       407 LdLS~N~-LssIP~l~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~-Ls~~~~  462 (788)
T PRK15387        407 LMVSGNR-LTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP-LSERTL  462 (788)
T ss_pred             EEccCCc-CCCCCcchhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC-CCchHH
Confidence            9999975 66788777789999998877 66788888888889999999985 444433

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.79  E-value=2e-20  Score=171.45  Aligned_cols=202  Identities=25%  Similarity=0.386  Sum_probs=143.1

Q ss_pred             CCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEecc
Q 020238           90 GNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAE  169 (329)
Q Consensus        90 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  169 (329)
                      .++++++++.+.+..+|.+++.+.+|+.+...+|.+ ..+|..+...++|+.|.+.+| .+..+|....+...|++|++.
T Consensus       241 ~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l-~~lp~ri~~~~~L~~l~~~~n-el~yip~~le~~~sL~tLdL~  318 (1081)
T KOG0618|consen  241 LNLQYLDISHNNLSNLPEWIGACANLEALNANHNRL-VALPLRISRITSLVSLSAAYN-ELEYIPPFLEGLKSLRTLDLQ  318 (1081)
T ss_pred             ccceeeecchhhhhcchHHHHhcccceEecccchhH-HhhHHHHhhhhhHHHHHhhhh-hhhhCCCcccccceeeeeeeh
Confidence            578889999999999998899999999999999775 566666666777777777764 344556666667777788777


Q ss_pred             CccccccChhhhhccc--------------------------------------------cCCCCCccEEEcCCCCCCCc
Q 020238          170 GTAIREVPLSIVRLNN--------------------------------------------FDGLQNLTSLYLTDCGITEL  205 (329)
Q Consensus       170 ~~~l~~~~~~~~~~~~--------------------------------------------~~~~~~L~~L~l~~~~l~~~  205 (329)
                      .|.+..+|........                                            +.++.+|+.|++++|.+..+
T Consensus       319 ~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~f  398 (1081)
T KOG0618|consen  319 SNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSF  398 (1081)
T ss_pred             hccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccC
Confidence            7777766653322111                                            55566777777777777777


Q ss_pred             chh-hcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCC--CCCCccEEeccCCCCCcCCCCCCCCCCC
Q 020238          206 PEN-LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK--LPCNLSELDAHHCTALESSPGLVFPSRD  282 (329)
Q Consensus       206 ~~~-~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~L~~L~l~~c~~l~~~~~~~~~~~~  282 (329)
                      |+. +.+++.|+.|+++||.++.+|..+..++.|++|..-+| .+..+|+  ..+.|+.+|++.|..-...-....+.+.
T Consensus       399 pas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN-~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~  477 (1081)
T KOG0618|consen  399 PASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSN-QLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPN  477 (1081)
T ss_pred             CHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCC-ceeechhhhhcCcceEEecccchhhhhhhhhhCCCcc
Confidence            653 55677777777777777777777777777777766553 3555663  3478999999988743322233334478


Q ss_pred             CcEEEcCCCccc
Q 020238          283 PQYFDLRNNLKL  294 (329)
Q Consensus       283 L~~L~i~~~~~l  294 (329)
                      |++||++|+..+
T Consensus       478 LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  478 LKYLDLSGNTRL  489 (1081)
T ss_pred             cceeeccCCccc
Confidence            999999999863

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.75  E-value=1.2e-17  Score=157.29  Aligned_cols=243  Identities=24%  Similarity=0.298  Sum_probs=114.1

Q ss_pred             CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEe
Q 020238           18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL   97 (329)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l   97 (329)
                      +.+.|+++++. ++..|.  .+  .++|+.|++++|.+. .+|..+.  .+|++|++++|.+. .+|.. -..+|+.|++
T Consensus       179 ~~~~L~L~~~~-LtsLP~--~I--p~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~-l~~~L~~L~L  248 (754)
T PRK15370        179 NKTELRLKILG-LTTIPA--CI--PEQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPAT-LPDTIQEMEL  248 (754)
T ss_pred             CceEEEeCCCC-cCcCCc--cc--ccCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChh-hhccccEEEC
Confidence            34555555543 444443  12  235556666555433 3443322  35566666655432 23321 0134556666


Q ss_pred             cCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccC
Q 020238           98 NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP  177 (329)
Q Consensus        98 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  177 (329)
                      ++|.+..+|..+.  .+|+.|++++|.+. .+|..+.  ++|+.|++++|... .+|..+.  ++|+.|++++|.+..+|
T Consensus       249 s~N~L~~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt~LP  320 (754)
T PRK15370        249 SINRITELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLTALP  320 (754)
T ss_pred             cCCccCcCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccccCC
Confidence            6655555554432  35566666554432 3443332  35566666554332 3333221  24555555555555444


Q ss_pred             hhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCCC-C
Q 020238          178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKL-P  256 (329)
Q Consensus       178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~-~  256 (329)
                      ..+        .++|+.|++++|.++.+|..+  +++|+.|++++|+++.+|..+  .++|+.|++++|. ++.+|+. .
T Consensus       321 ~~l--------~~sL~~L~Ls~N~Lt~LP~~l--~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~-Lt~LP~~l~  387 (754)
T PRK15370        321 ETL--------PPGLKTLEAGENALTSLPASL--PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNA-LTNLPENLP  387 (754)
T ss_pred             ccc--------cccceeccccCCccccCChhh--cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCc-CCCCCHhHH
Confidence            322        245555555555555554433  245555555555555555433  2455555555543 3344422 2


Q ss_pred             CCccEEeccCCCCCcCCCCCC----CCCCCCcEEEcCCCc
Q 020238          257 CNLSELDAHHCTALESSPGLV----FPSRDPQYFDLRNNL  292 (329)
Q Consensus       257 ~~L~~L~l~~c~~l~~~~~~~----~~~~~L~~L~i~~~~  292 (329)
                      .+|+.|++++|. +..+|..+    ...+.+..|++.+++
T Consensus       388 ~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        388 AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence            345555555544 23333322    122344555555554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.74  E-value=1.6e-17  Score=156.45  Aligned_cols=236  Identities=20%  Similarity=0.256  Sum_probs=180.4

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      |++++++.+|..+.  ++++.|++++|+ +..+|.  .+  .++|++|++++|.+. .+|..+.  .+|+.|++++|.+.
T Consensus       185 L~~~~LtsLP~~Ip--~~L~~L~Ls~N~-LtsLP~--~l--~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~  254 (754)
T PRK15370        185 LKILGLTTIPACIP--EQITTLILDNNE-LKSLPE--NL--QGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT  254 (754)
T ss_pred             eCCCCcCcCCcccc--cCCcEEEecCCC-CCcCCh--hh--ccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC
Confidence            45677888886653  589999999987 777775  23  358999999998754 5676543  47999999998765


Q ss_pred             CCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238           81 KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL  160 (329)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  160 (329)
                       .+|... ..+|+.|++++|.+..+|..+.  ++|+.|++++|.+. .+|..+.  ++|+.|++++|... .+|..+.  
T Consensus       255 -~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~LP~~l~--  324 (754)
T PRK15370        255 -ELPERL-PSALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-ALPETLP--  324 (754)
T ss_pred             -cCChhH-hCCCCEEECcCCccCccccccC--CCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cCCcccc--
Confidence             454321 2589999999999998887553  58999999998754 4555432  47889999987655 4554432  


Q ss_pred             ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccce
Q 020238          161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAY  240 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~  240 (329)
                      ++|+.|++++|.+..+|..+        .++|+.|++++|.++.+|..+  .+.|+.|++++|+++.+|..+.  ..|+.
T Consensus       325 ~sL~~L~Ls~N~Lt~LP~~l--------~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~--~sL~~  392 (754)
T PRK15370        325 PGLKTLEAGENALTSLPASL--------PPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP--AALQI  392 (754)
T ss_pred             ccceeccccCCccccCChhh--------cCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH--HHHHH
Confidence            68999999999999887654        378999999999999888655  4789999999999999987654  36999


Q ss_pred             ecccccccccccCCC-------CCCccEEeccCCCC
Q 020238          241 LKLSYCERLQSLPKL-------PCNLSELDAHHCTA  269 (329)
Q Consensus       241 L~l~~~~~l~~~~~~-------~~~L~~L~l~~c~~  269 (329)
                      |++++|. ++.+|..       .+.+..+++.+|+.
T Consensus       393 LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npl  427 (754)
T PRK15370        393 MQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPF  427 (754)
T ss_pred             HhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCc
Confidence            9999965 4566632       36788999999985

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.71  E-value=2.2e-19  Score=164.69  Aligned_cols=243  Identities=23%  Similarity=0.238  Sum_probs=179.6

Q ss_pred             CCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEE
Q 020238           16 NGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM   95 (329)
Q Consensus        16 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L   95 (329)
                      .++++.|....|.......    -..-.+|+.++++++.. ..+|..+..+++|+.++..+|.+......+....+|+.+
T Consensus       218 g~~l~~L~a~~n~l~~~~~----~p~p~nl~~~dis~n~l-~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l  292 (1081)
T KOG0618|consen  218 GPSLTALYADHNPLTTLDV----HPVPLNLQYLDISHNNL-SNLPEWIGACANLEALNANHNRLVALPLRISRITSLVSL  292 (1081)
T ss_pred             CcchheeeeccCcceeecc----ccccccceeeecchhhh-hcchHHHHhcccceEecccchhHHhhHHHHhhhhhHHHH
Confidence            4556666666665221111    12234788888888664 346677778888888888887764433455556777777


Q ss_pred             EecCccccccchhhhcCCCCCEEEcCCCCCcccCCccc--------------------------cCCCCCcEEeccCCCC
Q 020238           96 YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSL--------------------------CKLKSLNSIYLRWCSS  149 (329)
Q Consensus        96 ~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--------------------------~~l~~L~~L~l~~~~~  149 (329)
                      .+..|.++.+|+....+..|++|++..|.+.. +|..+                          .....|+.|++.+|..
T Consensus       293 ~~~~nel~yip~~le~~~sL~tLdL~~N~L~~-lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~L  371 (1081)
T KOG0618|consen  293 SAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS-LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHL  371 (1081)
T ss_pred             HhhhhhhhhCCCcccccceeeeeeehhccccc-cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcc
Confidence            77777777777777777777777777765422 22110                          1133477778888777


Q ss_pred             CCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238          150 LKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP  229 (329)
Q Consensus       150 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~  229 (329)
                      ....-+.+.+..+|+.|+++.|++..+|...     +.++..|++|+++||.++.+|..+..++.|++|...+|++..+|
T Consensus       372 td~c~p~l~~~~hLKVLhLsyNrL~~fpas~-----~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fP  446 (1081)
T KOG0618|consen  372 TDSCFPVLVNFKHLKVLHLSYNRLNSFPASK-----LRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFP  446 (1081)
T ss_pred             cccchhhhccccceeeeeecccccccCCHHH-----HhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeech
Confidence            7776667788899999999999999999876     67889999999999999999999999999999999999999999


Q ss_pred             hhhhcCCccceecccccccc-cccC-CCC-CCccEEeccCCCCC
Q 020238          230 ESIIHLSKLAYLKLSYCERL-QSLP-KLP-CNLSELDAHHCTAL  270 (329)
Q Consensus       230 ~~l~~~~~L~~L~l~~~~~l-~~~~-~~~-~~L~~L~l~~c~~l  270 (329)
                       .+..++.|+.+|++.|..- ..++ ..+ ++|++|+++||+.+
T Consensus       447 -e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  447 -ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             -hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCccc
Confidence             7889999999999986542 2233 223 79999999999864

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.70  E-value=9.5e-17  Score=150.63  Aligned_cols=229  Identities=22%  Similarity=0.223  Sum_probs=160.1

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      +++|+++.+|..   .++|++|++++|+ ++.+|.     ..++|+.|++++|.+. .+|..   ..+|+.|++++|.+.
T Consensus       229 L~~N~Lt~LP~l---p~~Lk~LdLs~N~-LtsLP~-----lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt  295 (788)
T PRK15387        229 IPDNNLTSLPAL---PPELRTLEVSGNQ-LTSLPV-----LPPGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT  295 (788)
T ss_pred             ccCCcCCCCCCC---CCCCcEEEecCCc-cCcccC-----cccccceeeccCCchh-hhhhc---hhhcCEEECcCCccc
Confidence            467899998753   5899999999986 666664     2468999999998743 44442   256888999987654


Q ss_pred             CCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238           81 KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL  160 (329)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  160 (329)
                       .+|.  ..++|+.|++++|.+..+|..   ...|+.|++++|.+. .+|.   -..+|+.|++++|.+. .+|..   .
T Consensus       296 -~LP~--~p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N~L~-~LP~---lp~~Lq~LdLS~N~Ls-~LP~l---p  361 (788)
T PRK15387        296 -SLPV--LPPGLQELSVSDNQLASLPAL---PSELCKLWAYNNQLT-SLPT---LPSGLQELSVSDNQLA-SLPTL---P  361 (788)
T ss_pred             -cccc--cccccceeECCCCccccCCCC---cccccccccccCccc-cccc---cccccceEecCCCccC-CCCCC---C
Confidence             4443  236799999999988877653   245777888887653 3443   1247888888886554 45543   2


Q ss_pred             ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccce
Q 020238          161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAY  240 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~  240 (329)
                      .+|+.|++++|.+..+|..         ..+|+.|++++|.++.+|..   .+.|+.|++++|+++.+|..   ..+|+.
T Consensus       362 ~~L~~L~Ls~N~L~~LP~l---------~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~LssIP~l---~~~L~~  426 (788)
T PRK15387        362 SELYKLWAYNNRLTSLPAL---------PSGLKELIVSGNRLTSLPVL---PSELKELMVSGNRLTSLPML---PSGLLS  426 (788)
T ss_pred             cccceehhhccccccCccc---------ccccceEEecCCcccCCCCc---ccCCCEEEccCCcCCCCCcc---hhhhhh
Confidence            4677788888888776632         24688888888888877643   35788888888888877743   346777


Q ss_pred             ecccccccccccCC---CCCCccEEeccCCCCCcC
Q 020238          241 LKLSYCERLQSLPK---LPCNLSELDAHHCTALES  272 (329)
Q Consensus       241 L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~  272 (329)
                      |++++|. ++.+|.   .+++|+.|++++|+.-+.
T Consensus       427 L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        427 LSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             hhhccCc-ccccChHHhhccCCCeEECCCCCCCch
Confidence            8888754 566774   346788888888875443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.69  E-value=6.4e-19  Score=131.67  Aligned_cols=164  Identities=28%  Similarity=0.424  Sum_probs=107.4

Q ss_pred             cCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEe
Q 020238           64 FRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIY  143 (329)
Q Consensus        64 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  143 (329)
                      ..+.+++.|.+++|......|.++.+.+|+.|++.+|+++++|..++.+++|+.|+++-|. +..+|.+|+.++.|+.|+
T Consensus        30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levld  108 (264)
T KOG0617|consen   30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLD  108 (264)
T ss_pred             cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhh
Confidence            4455556666666555555555666666666666666667777777777777777777644 455677777777777777


Q ss_pred             ccCCCCCC-CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCC
Q 020238          144 LRWCSSLK-SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEK  222 (329)
Q Consensus       144 l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  222 (329)
                      +.+|+..+ .+|..|..++.|+.|+++.|.+.-+|..+      +.+++|+.|.+.+|.+-++|..++.+..|++|++.+
T Consensus       109 ltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv------g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqg  182 (264)
T KOG0617|consen  109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV------GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQG  182 (264)
T ss_pred             ccccccccccCCcchhHHHHHHHHHhcCCCcccCChhh------hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccc
Confidence            77766554 45666666666777777777666666554      345667777777776666777777777777777777


Q ss_pred             CcCccCChhhhc
Q 020238          223 NNFERLPESIIH  234 (329)
Q Consensus       223 ~~i~~~~~~l~~  234 (329)
                      |+++-+|..+++
T Consensus       183 nrl~vlppel~~  194 (264)
T KOG0617|consen  183 NRLTVLPPELAN  194 (264)
T ss_pred             ceeeecChhhhh
Confidence            776666654443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.65  E-value=3.2e-17  Score=142.70  Aligned_cols=232  Identities=19%  Similarity=0.132  Sum_probs=104.2

Q ss_pred             ccCCCCceEEEecCCCCcc----cCCCcccccCcccCcEEeccCCCCCc------ccCccccCCCcccEEeecCCCCCCC
Q 020238           13 VQHNGKLKQIISRASNFFT----KSPNHSLTLHLDKLVNLNLNNCKSLR------ILPPGIFRLEFLKELDLWGCSKLKT   82 (329)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~------~~~~~~~~l~~L~~L~l~~~~~~~~   82 (329)
                      +..+.+|+.|++++|....    ..+.  .+...+++++++++++....      .++..+..+++|+.|++++|.+...
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~--~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~   96 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALAS--ALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPD   96 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHH--HHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChh
Confidence            3444556666666665211    1111  34455556666666654431      1223344456666666666555432


Q ss_pred             Cc-ccCCC---CCccEEEecCcccc-----ccchhhhcC-CCCCEEEcCCCCCcc----cCCccccCCCCCcEEeccCCC
Q 020238           83 LP-EISSA---GNIEVMYLNGTAIE-----ELPSSIECL-SGLSALYLDHCKRLK----SLPSSLCKLKSLNSIYLRWCS  148 (329)
Q Consensus        83 ~~-~~~~~---~~L~~L~l~~~~i~-----~~~~~~~~l-~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~  148 (329)
                      .+ .+...   ++|+.|+++++.+.     .+...+..+ ++|+.|++++|.+..    .++..+..+++|++|++++|.
T Consensus        97 ~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~  176 (319)
T cd00116          97 GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNG  176 (319)
T ss_pred             HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCC
Confidence            22 11111   33666666665554     122233444 566666666655442    122233444556666665554


Q ss_pred             CCCC----CCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC--cchhhc----CCCCccEE
Q 020238          149 SLKS----LPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE--LPENLG----QLSLLLEL  218 (329)
Q Consensus       149 ~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~----~~~~L~~L  218 (329)
                      ..+.    ++..+...++|+.|++++|.+....... ....+..+++|++|++++|.+++  +.....    ..+.|++|
T Consensus       177 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~-l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L  255 (319)
T cd00116         177 IGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASA-LAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTL  255 (319)
T ss_pred             CchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHH-HHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEE
Confidence            4321    1122333345555555555544221100 00013344555555555555543  111011    12455555


Q ss_pred             EcCCCcCc-----cCChhhhcCCccceecccccc
Q 020238          219 YLEKNNFE-----RLPESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       219 ~l~~~~i~-----~~~~~l~~~~~L~~L~l~~~~  247 (329)
                      ++++|.++     .+...+..+++|+.+++++|.
T Consensus       256 ~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~  289 (319)
T cd00116         256 SLSCNDITDDGAKDLAEVLAEKESLLELDLRGNK  289 (319)
T ss_pred             EccCCCCCcHHHHHHHHHHhcCCCccEEECCCCC
Confidence            55555553     222333344455555555543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.65  E-value=9.2e-18  Score=140.77  Aligned_cols=294  Identities=17%  Similarity=0.136  Sum_probs=179.5

Q ss_pred             CchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCC
Q 020238            4 GNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTL   83 (329)
Q Consensus         4 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~   83 (329)
                      -+++.+|..+..  .-..|+|..|. ++.+|.. +|+.+++|++|||++|.+...-|.+|.+++.|..|.+.+++.+.++
T Consensus        56 ~GL~eVP~~LP~--~tveirLdqN~-I~~iP~~-aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   56 KGLTEVPANLPP--ETVEIRLDQNQ-ISSIPPG-AFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             CCcccCcccCCC--cceEEEeccCC-cccCChh-hccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhh
Confidence            456666655443  67788888887 8888875 8999999999999999988888999999999999988887777777


Q ss_pred             c--ccCCCCCccEEEecCcccccc-chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC---------
Q 020238           84 P--EISSAGNIEVMYLNGTAIEEL-PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK---------  151 (329)
Q Consensus        84 ~--~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------  151 (329)
                      |  .+.++..++.|.+.-+++..+ ...+..++++..|.+..|.+...--..+..+..++.+.+..+...-         
T Consensus       132 ~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~  211 (498)
T KOG4237|consen  132 PKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLAD  211 (498)
T ss_pred             hhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhh
Confidence            6  466668888888988888744 4567889999999998866433333357777778887776655321         


Q ss_pred             ---CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC-Ccc-hhhcCCCCccEEEcCCCcCc
Q 020238          152 ---SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-ELP-ENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       152 ---~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~-~~~~~~~~L~~L~l~~~~i~  226 (329)
                         ..|..++......-..+...++..++..-..    ....++..=-.+.+... ..| ..+..+++|++|++++|+|+
T Consensus       212 ~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~----c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~  287 (498)
T KOG4237|consen  212 DLAMNPIETSGARCVSPYRLYYKRINQEDARKFL----CSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT  287 (498)
T ss_pred             HHhhchhhcccceecchHHHHHHHhcccchhhhh----hhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccc
Confidence               1122223333333333333333322211100    00001110011111111 122 23556777777777777776


Q ss_pred             cCC-hhhhcCCccceecccccccccccC----CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchhHHHH
Q 020238          227 RLP-ESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIRE  301 (329)
Q Consensus       227 ~~~-~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~  301 (329)
                      .+. .++.....++.|.|..|. +..+.    ...+.|+.|++++|.....-|..+-..-.|.+|++-.+|-..+..+.-
T Consensus       288 ~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~w  366 (498)
T KOG4237|consen  288 RIEDGAFEGAAELQELYLTRNK-LEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAW  366 (498)
T ss_pred             hhhhhhhcchhhhhhhhcCcch-HHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHH
Confidence            554 456666677777776643 33232    344667777777766443334444444566677777766666655554


Q ss_pred             Hhhhh
Q 020238          302 ILEDA  306 (329)
Q Consensus       302 ~~~~~  306 (329)
                      +.+..
T Consensus       367 l~~Wl  371 (498)
T KOG4237|consen  367 LGEWL  371 (498)
T ss_pred             HHHHH
Confidence            44433

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.64  E-value=1.1e-16  Score=139.36  Aligned_cols=238  Identities=21%  Similarity=0.162  Sum_probs=168.8

Q ss_pred             hhhhhhccCCCCceEEEecCCCCcccCCC-----cccccCcccCcEEeccCCCCCcccCccccCC---CcccEEeecCCC
Q 020238            7 QQLWDSVQHNGKLKQIISRASNFFTKSPN-----HSLTLHLDKLVNLNLNNCKSLRILPPGIFRL---EFLKELDLWGCS   78 (329)
Q Consensus         7 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l---~~L~~L~l~~~~   78 (329)
                      ..++..+...+++++++++++.. ...+.     ...+..+++|+.|++++|.+....+..+..+   ++|++|++++|.
T Consensus        41 ~~i~~~l~~~~~l~~l~l~~~~~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116          41 KALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             HHHHHHHhhCCCceEEecccccc-CCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc
Confidence            45667788889999999999863 31111     1146678899999999998765444444444   449999999987


Q ss_pred             CCCCC-----cccCCC-CCccEEEecCcccc-----ccchhhhcCCCCCEEEcCCCCCccc----CCccccCCCCCcEEe
Q 020238           79 KLKTL-----PEISSA-GNIEVMYLNGTAIE-----ELPSSIECLSGLSALYLDHCKRLKS----LPSSLCKLKSLNSIY  143 (329)
Q Consensus        79 ~~~~~-----~~~~~~-~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~  143 (329)
                      .....     ..+... ++|+.|++++|.+.     .++..+..+++|++|++.+|.+...    ++..+...++|+.|+
T Consensus       120 ~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~  199 (319)
T cd00116         120 LGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLD  199 (319)
T ss_pred             cchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEe
Confidence            65321     134455 89999999999887     3445567788999999999887642    333455678999999


Q ss_pred             ccCCCCCCC----CCcccCCCccCcEEeccCccccccCh-hhh-hccccCCCCCccEEEcCCCCCCC-----cchhhcCC
Q 020238          144 LRWCSSLKS----LPNELGNLEALNSLNAEGTAIREVPL-SIV-RLNNFDGLQNLTSLYLTDCGITE-----LPENLGQL  212 (329)
Q Consensus       144 l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~-~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~  212 (329)
                      +++|.....    +...+..+++|+.|++++|.+.+... .+. .+  ....+.|++|++++|.+++     +...+..+
T Consensus       200 L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~--~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~  277 (319)
T cd00116         200 LNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASAL--LSPNISLLTLSLSCNDITDDGAKDLAEVLAEK  277 (319)
T ss_pred             ccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHH--hccCCCceEEEccCCCCCcHHHHHHHHHHhcC
Confidence            999876532    33456778999999999998774211 111 11  1235799999999999973     44556677


Q ss_pred             CCccEEEcCCCcCccC-----ChhhhcC-Cccceecccccc
Q 020238          213 SLLLELYLEKNNFERL-----PESIIHL-SKLAYLKLSYCE  247 (329)
Q Consensus       213 ~~L~~L~l~~~~i~~~-----~~~l~~~-~~L~~L~l~~~~  247 (329)
                      ++|+.+++++|.++.-     .+.+... +.++.+++.+++
T Consensus       278 ~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (319)
T cd00116         278 ESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS  318 (319)
T ss_pred             CCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence            9999999999999732     2334444 678888887654

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=6.2e-18  Score=126.42  Aligned_cols=175  Identities=23%  Similarity=0.356  Sum_probs=148.9

Q ss_pred             cccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhh
Q 020238           30 FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI  109 (329)
Q Consensus        30 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  109 (329)
                      ++.......+..+.+++.|.+++|. ...+|..+..+.+|++|++.+|++....+.++.+++|+.|++.-|++..+|.+|
T Consensus        20 iSsf~~~~gLf~~s~ITrLtLSHNK-l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgf   98 (264)
T KOG0617|consen   20 ISSFEELPGLFNMSNITRLTLSHNK-LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGF   98 (264)
T ss_pred             cccHhhcccccchhhhhhhhcccCc-eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCcccc
Confidence            3333333356778899999999976 456777889999999999999887766668888999999999999999999999


Q ss_pred             hcCCCCCEEEcCCCCCcc-cCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCC
Q 020238          110 ECLSGLSALYLDHCKRLK-SLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDG  188 (329)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  188 (329)
                      +.+|.|++|++.+|+..+ .+|..|..++.|+.|++++| -.+.+|.+++++++|+.|.+..|.+-++|.+++.      
T Consensus        99 gs~p~levldltynnl~e~~lpgnff~m~tlralyl~dn-dfe~lp~dvg~lt~lqil~lrdndll~lpkeig~------  171 (264)
T KOG0617|consen   99 GSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDN-DFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGD------  171 (264)
T ss_pred             CCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCC-CcccCChhhhhhcceeEEeeccCchhhCcHHHHH------
Confidence            999999999999988766 47888888999999999995 4457899999999999999999999999988754      


Q ss_pred             CCCccEEEcCCCCCCCcchhhcCC
Q 020238          189 LQNLTSLYLTDCGITELPENLGQL  212 (329)
Q Consensus       189 ~~~L~~L~l~~~~l~~~~~~~~~~  212 (329)
                      +..|++|.+.+|.++-+|+.++++
T Consensus       172 lt~lrelhiqgnrl~vlppel~~l  195 (264)
T KOG0617|consen  172 LTRLRELHIQGNRLTVLPPELANL  195 (264)
T ss_pred             HHHHHHHhcccceeeecChhhhhh
Confidence            678999999999999988877654

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.45  E-value=9e-16  Score=128.96  Aligned_cols=241  Identities=18%  Similarity=0.166  Sum_probs=164.1

Q ss_pred             CCCCchhhhhhh-ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccC-ccccCCCcccEEeecCCC
Q 020238            1 MPHGNIQQLWDS-VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-PGIFRLEFLKELDLWGCS   78 (329)
Q Consensus         1 l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~   78 (329)
                      |..|+|+.+|++ |+.+++|+.|||++|. ++.+... .|.+++++..|-+-+++..+.+| ..|.++..++.|.+..|+
T Consensus        74 LdqN~I~~iP~~aF~~l~~LRrLdLS~N~-Is~I~p~-AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   74 LDQNQISSIPPGAFKTLHRLRRLDLSKNN-ISFIAPD-AFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             eccCCcccCChhhccchhhhceecccccc-hhhcChH-hhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhh
Confidence            456899999755 7999999999999998 6665543 89999999998888855555555 457778999999988876


Q ss_pred             CCCCCc-ccCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcc------------cCCccccCCCCCcEEec
Q 020238           79 KLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLK------------SLPSSLCKLKSLNSIYL  144 (329)
Q Consensus        79 ~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~------------~~~~~~~~l~~L~~L~l  144 (329)
                      +.-... .+..++++..|.+.+|.+..++. .+..+..++.+.+..|.+..            ..+.+++......-..+
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl  231 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL  231 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence            542222 45556888888999998887765 56777788887776665321            11222222111111111


Q ss_pred             -------------------------cCCCCCCCCC-cccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238          145 -------------------------RWCSSLKSLP-NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT  198 (329)
Q Consensus       145 -------------------------~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  198 (329)
                                               +.|......| ..|.++++|+++++++|.++.+....     |.+...+++|.+.
T Consensus       232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a-----Fe~~a~l~eL~L~  306 (498)
T KOG4237|consen  232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA-----FEGAAELQELYLT  306 (498)
T ss_pred             HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh-----hcchhhhhhhhcC
Confidence                                     1111122222 23677888888888888888776655     6677888888888


Q ss_pred             CCCCCCcch-hhcCCCCccEEEcCCCcCccC-ChhhhcCCccceeccccccc
Q 020238          199 DCGITELPE-NLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCER  248 (329)
Q Consensus       199 ~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~  248 (329)
                      +|++..+.. .+.++..|+.|++.+|+|+.+ |-++.....|.+|++-.|+.
T Consensus       307 ~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  307 RNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             cchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence            888776543 456688888888888888843 45666777788888776553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=9.1e-14  Score=118.47  Aligned_cols=219  Identities=17%  Similarity=0.177  Sum_probs=152.8

Q ss_pred             hhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCc--ccCccccCCCcccEEeecCCCCCCCCc
Q 020238            7 QQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLR--ILPPGIFRLEFLKELDLWGCSKLKTLP   84 (329)
Q Consensus         7 ~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~   84 (329)
                      +++-+.-+.+.+|+.+.+.++. +...+.......|++++.||+++|-+..  .+...+..+|+|+.|+++.|.......
T Consensus       111 Dki~akQsn~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~  189 (505)
T KOG3207|consen  111 DKIAAKQSNLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS  189 (505)
T ss_pred             HHHHHHhhhHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc
Confidence            3343445678899999999887 4444432367889999999999976544  344556779999999999987654433


Q ss_pred             ccC--CCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC-cccCC
Q 020238           85 EIS--SAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP-NELGN  159 (329)
Q Consensus        85 ~~~--~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~  159 (329)
                      +..  .++.|+.|.++.|.++  ++...+..+|+|..|++.+|.....-.....-+..|+.|++++|+.++.-. ...+.
T Consensus       190 s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~  269 (505)
T KOG3207|consen  190 SNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGT  269 (505)
T ss_pred             ccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccccccc
Confidence            222  3488999999999988  455556678999999999885332222223346678999999987775421 34567


Q ss_pred             CccCcEEeccCccccccChhhh-hccccCCCCCccEEEcCCCCCCCcch--hhcCCCCccEEEcCCCcCc
Q 020238          160 LEALNSLNAEGTAIREVPLSIV-RLNNFDGLQNLTSLYLTDCGITELPE--NLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       160 l~~L~~L~l~~~~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~i~  226 (329)
                      ++.|..|+++.+++.++..... .......+++|++|++..|++.+++.  .+..+++|+.|.+.+|.++
T Consensus       270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN  339 (505)
T ss_pred             ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence            8889999999988875532211 11113467889999999998877543  3556778888887777664

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.29  E-value=1.5e-13  Score=120.84  Aligned_cols=191  Identities=27%  Similarity=0.347  Sum_probs=133.6

Q ss_pred             CCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEecc
Q 020238           66 LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLR  145 (329)
Q Consensus        66 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  145 (329)
                      +..-...|++.|.+.....++..+..|+.+.++.|.+..+|..+..+..|++++++.|++ ..+|..+..++ |+.|.++
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql-S~lp~~lC~lp-Lkvli~s  151 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL-SHLPDGLCDLP-LKVLIVS  151 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh-hcCChhhhcCc-ceeEEEe
Confidence            334444566665443222244444666667777777777777777788888888887663 44566666555 7777777


Q ss_pred             CCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcC
Q 020238          146 WCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNF  225 (329)
Q Consensus       146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i  225 (329)
                      + +..+.+|..++....|..|+.+.|.+..+|..+      .++.+|+.|.+..|++..+|..+..+| |.+||+++|++
T Consensus       152 N-Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql------~~l~slr~l~vrRn~l~~lp~El~~Lp-Li~lDfScNki  223 (722)
T KOG0532|consen  152 N-NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQL------GYLTSLRDLNVRRNHLEDLPEELCSLP-LIRLDFSCNKI  223 (722)
T ss_pred             c-CccccCCcccccchhHHHhhhhhhhhhhchHHh------hhHHHHHHHHHhhhhhhhCCHHHhCCc-eeeeecccCce
Confidence            6 555677777777778888888888888877765      456778888888888888888777444 88888888888


Q ss_pred             ccCChhhhcCCccceecccccccccccC------CCCCCccEEeccCC
Q 020238          226 ERLPESIIHLSKLAYLKLSYCERLQSLP------KLPCNLSELDAHHC  267 (329)
Q Consensus       226 ~~~~~~l~~~~~L~~L~l~~~~~l~~~~------~~~~~L~~L~l~~c  267 (329)
                      +.+|-.+.+|+.|++|-|.+|+. .+-|      ...+-.++|++..|
T Consensus       224 s~iPv~fr~m~~Lq~l~LenNPL-qSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  224 SYLPVDFRKMRHLQVLQLENNPL-QSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             eecchhhhhhhhheeeeeccCCC-CCChHHHHhccceeeeeeecchhc
Confidence            88888888888888888887663 3333      23356677777777

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.28  E-value=4.5e-13  Score=111.24  Aligned_cols=229  Identities=17%  Similarity=0.173  Sum_probs=129.6

Q ss_pred             ccCcccCcEEeccCCCCCcc----cCccccCCCcccEEeecCCCCCCC----Cc--------ccCCCCCccEEEecCccc
Q 020238           39 TLHLDKLVNLNLNNCKSLRI----LPPGIFRLEFLKELDLWGCSKLKT----LP--------EISSAGNIEVMYLNGTAI  102 (329)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~--------~~~~~~~L~~L~l~~~~i  102 (329)
                      ...+..+++++++||.+...    +...+...+.|++.++++- +.+.    +|        .+..+|+|++++|++|.+
T Consensus        26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            33455566666666655432    2233444555666666552 2221    11        233445666777776666


Q ss_pred             c-c----cchhhhcCCCCCEEEcCCCCCcccC-------------CccccCCCCCcEEeccCCCCCCC----CCcccCCC
Q 020238          103 E-E----LPSSIECLSGLSALYLDHCKRLKSL-------------PSSLCKLKSLNSIYLRWCSSLKS----LPNELGNL  160 (329)
Q Consensus       103 ~-~----~~~~~~~l~~L~~L~l~~~~~~~~~-------------~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l  160 (329)
                      . .    +...+.++..|++|.+.+|.+...-             .......+.|+++...+|+.-..    +...|...
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~  184 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH  184 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence            5 1    2233556777888888777653221             11234456788888777554321    23446666


Q ss_pred             ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc-----cCCh
Q 020238          161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE-----RLPE  230 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~-----~~~~  230 (329)
                      +.|+.+.+..|.|..-... .....+..+++|+.||+.+|.++.     +...+..+++|+.|++++|.+.     .+..
T Consensus       185 ~~leevr~~qN~I~~eG~~-al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~  263 (382)
T KOG1909|consen  185 PTLEEVRLSQNGIRPEGVT-ALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVD  263 (382)
T ss_pred             cccceEEEecccccCchhH-HHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHH
Confidence            7888888888877632211 111225678888888888887764     4556677778888888888775     2222


Q ss_pred             hhh-cCCccceecccccccccccC-------CCCCCccEEeccCCCC
Q 020238          231 SII-HLSKLAYLKLSYCERLQSLP-------KLPCNLSELDAHHCTA  269 (329)
Q Consensus       231 ~l~-~~~~L~~L~l~~~~~l~~~~-------~~~~~L~~L~l~~c~~  269 (329)
                      ++. ..|.|+.+.+.+|..-..-.       ..-+.|+.|++++|..
T Consensus       264 al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  264 ALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            222 35677777777765432111       1135666666666664

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.23  E-value=1.2e-12  Score=108.76  Aligned_cols=236  Identities=17%  Similarity=0.162  Sum_probs=161.9

Q ss_pred             hhccCCCCceEEEecCCCCcccCCCc--ccccCcccCcEEeccCCCCCc----ccCc-------cccCCCcccEEeecCC
Q 020238           11 DSVQHNGKLKQIISRASNFFTKSPNH--SLTLHLDKLVNLNLNNCKSLR----ILPP-------GIFRLEFLKELDLWGC   77 (329)
Q Consensus        11 ~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~----~~~~-------~~~~l~~L~~L~l~~~   77 (329)
                      +.......++.+++++|.+.+.....  ..+...++|++.++++ -+.+    .+|.       ++..++.|++++||+|
T Consensus        24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd-~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN  102 (382)
T KOG1909|consen   24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSD-MFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN  102 (382)
T ss_pred             HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHh-hhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence            44567789999999999865544321  1456667888888886 3222    2333       3445789999999998


Q ss_pred             CCCCCCc-----ccCCCCCccEEEecCcccccc--------------chhhhcCCCCCEEEcCCCCCccc----CCcccc
Q 020238           78 SKLKTLP-----EISSAGNIEVMYLNGTAIEEL--------------PSSIECLSGLSALYLDHCKRLKS----LPSSLC  134 (329)
Q Consensus        78 ~~~~~~~-----~~~~~~~L~~L~l~~~~i~~~--------------~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~  134 (329)
                      -+....+     -+..+..|+.|.+.+|.+...              ......-+.||++....|..-..    +...+.
T Consensus       103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~  182 (382)
T KOG1909|consen  103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQ  182 (382)
T ss_pred             ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHH
Confidence            8775543     234468899999999888722              11234567899998888665322    234566


Q ss_pred             CCCCCcEEeccCCCCCCC----CCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-----c
Q 020238          135 KLKSLNSIYLRWCSSLKS----LPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-----L  205 (329)
Q Consensus       135 ~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~  205 (329)
                      ..+.|+.+.++.|.+...    +...+..+++|+.|++..|.++...... .-..+..+++|+.+++++|.+..     +
T Consensus       183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~-LakaL~s~~~L~El~l~dcll~~~Ga~a~  261 (382)
T KOG1909|consen  183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVA-LAKALSSWPHLRELNLGDCLLENEGAIAF  261 (382)
T ss_pred             hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHH-HHHHhcccchheeecccccccccccHHHH
Confidence            778899999988655432    2345778899999999998776432211 11125567899999999998875     3


Q ss_pred             chhh-cCCCCccEEEcCCCcCc-----cCChhhhcCCccceeccccccc
Q 020238          206 PENL-GQLSLLLELYLEKNNFE-----RLPESIIHLSKLAYLKLSYCER  248 (329)
Q Consensus       206 ~~~~-~~~~~L~~L~l~~~~i~-----~~~~~l~~~~~L~~L~l~~~~~  248 (329)
                      ...+ ...|.|+.+.+.+|.|+     .+...+...+.|..|++++|+.
T Consensus       262 ~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  262 VDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            3333 34789999999999887     2234556688999999999875

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.22  E-value=3.4e-13  Score=114.45  Aligned_cols=286  Identities=18%  Similarity=0.184  Sum_probs=183.0

Q ss_pred             CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcc--cCccccCCCcccEEeecCCCCCCCCc---ccCCCCCc
Q 020238           18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI--LPPGIFRLEFLKELDLWGCSKLKTLP---EISSAGNI   92 (329)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~~~~~L   92 (329)
                      -|+.|.+.||+.....+.......||++++|.+.+|..++.  +-..-..|++|+.+++-.|..+....   -...+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            57777777777666666555667777888887777765442  11222347777777777765443321   12234677


Q ss_pred             cEEEecCc-ccc--ccchhhhcCCCCCEEEcCCCCCccc--CCccccCCCCCcEEeccCCCCCCCCCcc--cCCCccCcE
Q 020238           93 EVMYLNGT-AIE--ELPSSIECLSGLSALYLDHCKRLKS--LPSSLCKLKSLNSIYLRWCSSLKSLPNE--LGNLEALNS  165 (329)
Q Consensus        93 ~~L~l~~~-~i~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~  165 (329)
                      ++++++.+ .+.  .+.....++..++.+...+|.-.+.  +-..-..+..+.++++.+|..++.....  -..+..|+.
T Consensus       219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~  298 (483)
T KOG4341|consen  219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQV  298 (483)
T ss_pred             HHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhh
Confidence            77777644 233  2333344555566665555543221  1111123455666777777655543311  235667788


Q ss_pred             EeccCccc-cccChhhhhccccCCCCCccEEEcCCCC-CCC--cchhhcCCCCccEEEcCCCcCc---cCChhhhcCCcc
Q 020238          166 LNAEGTAI-REVPLSIVRLNNFDGLQNLTSLYLTDCG-ITE--LPENLGQLSLLLELYLEKNNFE---RLPESIIHLSKL  238 (329)
Q Consensus       166 L~l~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~--~~~~~~~~~~L~~L~l~~~~i~---~~~~~l~~~~~L  238 (329)
                      +..+++.- .+.+  +..+  -+++.+|+.+.+.+|+ +++  +...-.+++.|+.+++..+...   ++...-.+++.|
T Consensus       299 l~~s~~t~~~d~~--l~aL--g~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~l  374 (483)
T KOG4341|consen  299 LCYSSCTDITDEV--LWAL--GQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRL  374 (483)
T ss_pred             hcccCCCCCchHH--HHHH--hcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchh
Confidence            87776542 2211  1222  3578999999999994 554  3333467999999999998443   344455689999


Q ss_pred             ceecccccccccccC--------CCCCCccEEeccCCCCCcCC-CCCCCCCCCCcEEEcCCCcccchhHHHHHhhhhH
Q 020238          239 AYLKLSYCERLQSLP--------KLPCNLSELDAHHCTALESS-PGLVFPSRDPQYFDLRNNLKLDRNEIREILEDAQ  307 (329)
Q Consensus       239 ~~L~l~~~~~l~~~~--------~~~~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~  307 (329)
                      +++.+++|..+++-.        .....|+.+++++|+.+++- -.-...++.|+.+++.+|..++..++..+..+..
T Consensus       375 r~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp  452 (483)
T KOG4341|consen  375 RVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP  452 (483)
T ss_pred             ccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence            999999998887652        34568999999999998643 2444667889999999999999999998766553

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.21  E-value=1.2e-11  Score=118.98  Aligned_cols=152  Identities=29%  Similarity=0.321  Sum_probs=111.7

Q ss_pred             CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCC-CcccC-ccccCCCcccEEeecCCCCCCCCcc-cCCCCC
Q 020238           15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKS-LRILP-PGIFRLEFLKELDLWGCSKLKTLPE-ISSAGN   91 (329)
Q Consensus        15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~   91 (329)
                      .....+...+.+++ +...+.   -..++.|++|-+.++.. ...++ ..|..++.|++||+++|..+..+|. ++.+.+
T Consensus       521 ~~~~~rr~s~~~~~-~~~~~~---~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~  596 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNK-IEHIAG---SSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH  596 (889)
T ss_pred             chhheeEEEEeccc-hhhccC---CCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence            33466777777766 444443   34567899999999863 33344 3466799999999999988888884 566799


Q ss_pred             ccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCC--CCCCcccCCCccCcEEecc
Q 020238           92 IEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSL--KSLPNELGNLEALNSLNAE  169 (329)
Q Consensus        92 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~  169 (329)
                      |++|+++++.+..+|.++.++..|.+|++..+......+.....+++|++|.+......  ...-..+..+.+|+.+.+.
T Consensus       597 LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  597 LRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             hhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            99999999999999999999999999999998777777776777999999999764311  1112234455556555553


Q ss_pred             C
Q 020238          170 G  170 (329)
Q Consensus       170 ~  170 (329)
                      .
T Consensus       677 ~  677 (889)
T KOG4658|consen  677 I  677 (889)
T ss_pred             c
Confidence            3

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=4.4e-12  Score=108.37  Aligned_cols=198  Identities=20%  Similarity=0.231  Sum_probs=84.0

Q ss_pred             cccCcEEeccCCCCCcccC--ccccCCCcccEEeecCCCCCCCCc--c-cCCCCCccEEEecCccccccc--hhhhcCCC
Q 020238           42 LDKLVNLNLNNCKSLRILP--PGIFRLEFLKELDLWGCSKLKTLP--E-ISSAGNIEVMYLNGTAIEELP--SSIECLSG  114 (329)
Q Consensus        42 ~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~--~-~~~~~~L~~L~l~~~~i~~~~--~~~~~l~~  114 (329)
                      +.+|+++.+.++.... .+  .....|++++.||++.|-+..-.+  . ...+|+|+.|+++.|.+....  ..-..+++
T Consensus       120 ~kkL~~IsLdn~~V~~-~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  120 LKKLREISLDNYRVED-AGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             HHhhhheeecCccccc-cchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            4455555555544221 11  123345566666666543221111  1 122355555555555554111  11123455


Q ss_pred             CCEEEcCCCCCccc-CCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCcc
Q 020238          115 LSALYLDHCKRLKS-LPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT  193 (329)
Q Consensus       115 L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~  193 (329)
                      |+.|.++.|.+... +...+..+|+++.|++.+|...........-+..|+.|++++|.+-+++....    ...++.|.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~----~~~l~~L~  274 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYK----VGTLPGLN  274 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccc----cccccchh
Confidence            55555555554432 11223345555555555543222111122233445555555555444332111    23445555


Q ss_pred             EEEcCCCCCCC--cchh-----hcCCCCccEEEcCCCcCccCC--hhhhcCCccceeccc
Q 020238          194 SLYLTDCGITE--LPEN-----LGQLSLLLELYLEKNNFERLP--ESIIHLSKLAYLKLS  244 (329)
Q Consensus       194 ~L~l~~~~l~~--~~~~-----~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~  244 (329)
                      .|.++.+.+.+  +|+.     ...++.|+.|++..|+|..++  ..+..+++|+.+.+.
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcc
Confidence            55555555544  2221     223455555555555554333  223334444444433

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=2.3e-11  Score=99.51  Aligned_cols=219  Identities=19%  Similarity=0.119  Sum_probs=144.3

Q ss_pred             ccCcccCcEEeccCCCC--------CcccCccccCCCcccEEeecCCCCCCCCcccCCC-CCccEEEecCccccccchhh
Q 020238           39 TLHLDKLVNLNLNNCKS--------LRILPPGIFRLEFLKELDLWGCSKLKTLPEISSA-GNIEVMYLNGTAIEELPSSI  109 (329)
Q Consensus        39 ~~~~~~L~~L~l~~~~~--------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l~~~~i~~~~~~~  109 (329)
                      +-.|.+|+.|.+++...        -..+|..+.-+++|+.+.++.|.- ..+..+... |.|+++.+..+.++..|.-+
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~-~~i~~~~~~kptl~t~~v~~s~~~~~~~l~  256 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALST-ENIVDIELLKPTLQTICVHNTTIQDVPSLL  256 (490)
T ss_pred             HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccch-hheeceeecCchhheeeeeccccccccccc
Confidence            44567888888876432        112344445578999999998753 233344334 88899988877766443221


Q ss_pred             hcCCCCCEEEcCCCCC--c-ccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhcccc
Q 020238          110 ECLSGLSALYLDHCKR--L-KSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNF  186 (329)
Q Consensus       110 ~~l~~L~~L~l~~~~~--~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~  186 (329)
                         |.=...+.++..-  . ......+..+..|+++++++| .+..+.+...-.+.++.|+++.|++..+..       +
T Consensus       257 ---pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-------L  325 (490)
T KOG1259|consen  257 ---PETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQNRIRTVQN-------L  325 (490)
T ss_pred             ---chhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhhhccceeEEeccccceeeehh-------h
Confidence               1111122222111  1 111123445778899999984 444566666777899999999998886643       4


Q ss_pred             CCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccc--cccC--CCCCCccEE
Q 020238          187 DGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERL--QSLP--KLPCNLSEL  262 (329)
Q Consensus       187 ~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l--~~~~--~~~~~L~~L  262 (329)
                      +.+++|++||+++|.++++..+-..+-+.++|.+++|.|.++. .+..+-+|..|++++|+.-  ..+.  ..+|-|+.+
T Consensus       326 a~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l  404 (490)
T KOG1259|consen  326 AELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETL  404 (490)
T ss_pred             hhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHH
Confidence            5678999999999998887777777888999999999887653 5677788889999887532  1111  345678888


Q ss_pred             eccCCCCC
Q 020238          263 DAHHCTAL  270 (329)
Q Consensus       263 ~l~~c~~l  270 (329)
                      .+.+||.-
T Consensus       405 ~L~~NPl~  412 (490)
T KOG1259|consen  405 RLTGNPLA  412 (490)
T ss_pred             hhcCCCcc
Confidence            88888843

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.08  E-value=6.8e-12  Score=110.59  Aligned_cols=206  Identities=23%  Similarity=0.328  Sum_probs=156.2

Q ss_pred             cccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhh
Q 020238           30 FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI  109 (329)
Q Consensus        30 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~  109 (329)
                      +.+.|....--.+..-...+++.|.+. .+|..+..|..|+.+.++.|.+....+.+..+..|+.++++.|.++.+|..+
T Consensus        62 lk~fpr~a~~~~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~l  140 (722)
T KOG0532|consen   62 LKEFPRGAASYDLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGL  140 (722)
T ss_pred             hhcCCCccccccccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhh
Confidence            454544322233445566777876643 4677778888899999998877666667777788999999999999888888


Q ss_pred             hcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCC
Q 020238          110 ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGL  189 (329)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  189 (329)
                      ..++ |+.|-+++|. .+.+|..++..+.|..|+.+.|... .+|..++.+.+|+.|.+..|.+..+|.++..       
T Consensus       141 C~lp-Lkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~~-------  210 (722)
T KOG0532|consen  141 CDLP-LKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELCS-------  210 (722)
T ss_pred             hcCc-ceeEEEecCc-cccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHhC-------
Confidence            7766 8888888855 5778888888888999999886554 5677788889999999999999999888743       


Q ss_pred             CCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhh---cCCccceeccccc
Q 020238          190 QNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESII---HLSKLAYLKLSYC  246 (329)
Q Consensus       190 ~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~---~~~~L~~L~l~~~  246 (329)
                      -.|..||++.|++..+|..+..+..|+.|-|.+|.+.+=|..+.   ...-.++|+..-|
T Consensus       211 LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  211 LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence            35889999999999999999999999999999998876554332   2233456666655

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.07  E-value=3.3e-10  Score=101.56  Aligned_cols=175  Identities=31%  Similarity=0.391  Sum_probs=95.8

Q ss_pred             CCcccEEeecCCCCCCCCcccCCCC-CccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEec
Q 020238           66 LEFLKELDLWGCSKLKTLPEISSAG-NIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYL  144 (329)
Q Consensus        66 l~~L~~L~l~~~~~~~~~~~~~~~~-~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  144 (329)
                      ...++.|++.++.+....+...... +|+.|+++++.+..++..+..+++|+.|++++|++ ..++......+.|+.|++
T Consensus       115 ~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l-~~l~~~~~~~~~L~~L~l  193 (394)
T COG4886         115 LTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDL  193 (394)
T ss_pred             ccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchh-hhhhhhhhhhhhhhheec
Confidence            3556666666654332222222232 66666666666666655566666666666666553 333333334566666666


Q ss_pred             cCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCc
Q 020238          145 RWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNN  224 (329)
Q Consensus       145 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~  224 (329)
                      ++|. ...+|........|+++.+++|.+...+..      +..+..+..+.+.+|.+..++..++.+++++.|++++|.
T Consensus       194 s~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~------~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n~  266 (394)
T COG4886         194 SGNK-ISDLPPEIELLSALEELDLSNNSIIELLSS------LSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNNQ  266 (394)
T ss_pred             cCCc-cccCchhhhhhhhhhhhhhcCCcceecchh------hhhcccccccccCCceeeeccchhccccccceecccccc
Confidence            6633 334444333444466666666643322222      234455555556666665555556666666666666666


Q ss_pred             CccCChhhhcCCccceecccccccc
Q 020238          225 FERLPESIIHLSKLAYLKLSYCERL  249 (329)
Q Consensus       225 i~~~~~~l~~~~~L~~L~l~~~~~l  249 (329)
                      ++.++. ++...+++.++++++...
T Consensus       267 i~~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         267 ISSISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             cccccc-ccccCccCEEeccCcccc
Confidence            666654 566666666666665443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.05  E-value=3e-10  Score=101.90  Aligned_cols=191  Identities=34%  Similarity=0.419  Sum_probs=117.6

Q ss_pred             EEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCC-CCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCC
Q 020238           71 ELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLS-GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS  149 (329)
Q Consensus        71 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  149 (329)
                      .++...+........+.....++.+++.++.+.+++....... +|+.|+++.|.+ ..++..+..+++|+.|++++|+.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l  175 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDL  175 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccch-hhhhhhhhccccccccccCCchh
Confidence            4555555543444444445667777777777777766666663 777777777553 33434456677777777777544


Q ss_pred             CCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238          150 LKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP  229 (329)
Q Consensus       150 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~  229 (329)
                      . .++......+.|+.|++++|.+..+|...      .....|+.+.+++|.+...+..+..+.++..+.+.+|++..++
T Consensus       176 ~-~l~~~~~~~~~L~~L~ls~N~i~~l~~~~------~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~  248 (394)
T COG4886         176 S-DLPKLLSNLSNLNNLDLSGNKISDLPPEI------ELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLP  248 (394)
T ss_pred             h-hhhhhhhhhhhhhheeccCCccccCchhh------hhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeecc
Confidence            4 33333335667777777777777766543      1234577777777765555556666777777777777666656


Q ss_pred             hhhhcCCccceecccccccccccC--CCCCCccEEeccCCCCC
Q 020238          230 ESIIHLSKLAYLKLSYCERLQSLP--KLPCNLSELDAHHCTAL  270 (329)
Q Consensus       230 ~~l~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~l  270 (329)
                      ..+..++.++.|++++|. +++++  ....+++.|+++++...
T Consensus       249 ~~~~~l~~l~~L~~s~n~-i~~i~~~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         249 ESIGNLSNLETLDLSNNQ-ISSISSLGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             chhccccccceecccccc-ccccccccccCccCEEeccCcccc
Confidence            666667777777777643 44444  23356777777766544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=2.6e-10  Score=88.66  Aligned_cols=84  Identities=30%  Similarity=0.338  Sum_probs=20.3

Q ss_pred             CCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc--hhhcCCC
Q 020238          136 LKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP--ENLGQLS  213 (329)
Q Consensus       136 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~  213 (329)
                      +.+|+.|++++|.+...  ..+..++.|+.|++++|.++.+...+     ...+++|++|++++|.+.++.  ..+..++
T Consensus        41 l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i~~~l-----~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~  113 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSISEGL-----DKNLPNLQELYLSNNKISDLNELEPLSSLP  113 (175)
T ss_dssp             -TT--EEE-TTS--S----TT----TT--EEE--SS---S-CHHH-----HHH-TT--EEE-TTS---SCCCCGGGGG-T
T ss_pred             hcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCccccch-----HHhCCcCCEEECcCCcCCChHHhHHHHcCC
Confidence            34444555544333321  12334444444444444444433221     012344444444444444321  1233344


Q ss_pred             CccEEEcCCCcCc
Q 020238          214 LLLELYLEKNNFE  226 (329)
Q Consensus       214 ~L~~L~l~~~~i~  226 (329)
                      +|+.|++.+|.++
T Consensus       114 ~L~~L~L~~NPv~  126 (175)
T PF14580_consen  114 KLRVLSLEGNPVC  126 (175)
T ss_dssp             T--EEE-TT-GGG
T ss_pred             CcceeeccCCccc
Confidence            4444444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.01  E-value=6.6e-10  Score=86.43  Aligned_cols=124  Identities=28%  Similarity=0.345  Sum_probs=45.4

Q ss_pred             CCCCCcEEeccCCCCCCCCCcccC-CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhh-cCC
Q 020238          135 KLKSLNSIYLRWCSSLKSLPNELG-NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL-GQL  212 (329)
Q Consensus       135 ~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~  212 (329)
                      +..++++|++.+|.+.. + +.++ .+.+|+.|++++|.++.+..       +..++.|+.|++++|.++++...+ ..+
T Consensus        17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l~~-------l~~L~~L~~L~L~~N~I~~i~~~l~~~l   87 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKLEG-------LPGLPRLKTLDLSNNRISSISEGLDKNL   87 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S--TT-----------TT--EEE--SS---S-CHHHHHH-
T ss_pred             ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccccC-------ccChhhhhhcccCCCCCCccccchHHhC
Confidence            44467777777755443 2 2333 46778888888888776542       455778888888888888875544 357


Q ss_pred             CCccEEEcCCCcCccCC--hhhhcCCccceecccccccccccC-------CCCCCccEEeccCCC
Q 020238          213 SLLLELYLEKNNFERLP--ESIIHLSKLAYLKLSYCERLQSLP-------KLPCNLSELDAHHCT  268 (329)
Q Consensus       213 ~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~~~~~l~~~~-------~~~~~L~~L~l~~c~  268 (329)
                      |+|+.|++++|+|..+.  ..+..+++|+.|++.+|+.-. .+       ..+|+|+.||-....
T Consensus        88 p~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~-~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   88 PNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE-KKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG-STTHHHHHHHH-TT-SEETTEETT
T ss_pred             CcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc-hhhHHHHHHHHcChhheeCCEEcc
Confidence            88888888888876433  566778888888888877532 22       234677777665543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.01  E-value=2.3e-10  Score=110.27  Aligned_cols=108  Identities=22%  Similarity=0.219  Sum_probs=68.4

Q ss_pred             CCCCceEEEecCCCC-cccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCcc
Q 020238           15 HNGKLKQIISRASNF-FTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE   93 (329)
Q Consensus        15 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~   93 (329)
                      .+++|++|-+.++.. +...+.. .|..+|.|+.||+++|.....+|..++.+.+|+.|++++..+..-...+.++..|.
T Consensus       543 ~~~~L~tLll~~n~~~l~~is~~-ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~  621 (889)
T KOG4658|consen  543 ENPKLRTLLLQRNSDWLLEISGE-FFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLI  621 (889)
T ss_pred             CCCccceEEEeecchhhhhcCHH-HHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhh
Confidence            555777777777652 3333321 36667777777777777777777777777777777777755443333555567777


Q ss_pred             EEEecCcccc-ccchhhhcCCCCCEEEcCCC
Q 020238           94 VMYLNGTAIE-ELPSSIECLSGLSALYLDHC  123 (329)
Q Consensus        94 ~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~  123 (329)
                      +|++..+... .++.....+++||+|.+...
T Consensus       622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  622 YLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             eeccccccccccccchhhhcccccEEEeecc
Confidence            7777765433 33344445777777777653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.99  E-value=9.7e-11  Score=95.88  Aligned_cols=223  Identities=17%  Similarity=0.120  Sum_probs=95.5

Q ss_pred             ccCCCCceEEEecCCCCcccCCC------cccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCccc
Q 020238           13 VQHNGKLKQIISRASNFFTKSPN------HSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEI   86 (329)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~~~~~------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~   86 (329)
                      +.-|..|++|.+++-..--+...      ...+.-+.+|+.+.++.|. .+.+......-|.|+++.+.+.. ....|.+
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v~~s~-~~~~~~l  255 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICVHNTT-IQDVPSL  255 (490)
T ss_pred             HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeeeeccc-ccccccc
Confidence            34456788888876542111111      1144556778888888875 22233322334667776665432 2222211


Q ss_pred             CCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCc
Q 020238           87 SSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALN  164 (329)
Q Consensus        87 ~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  164 (329)
                      .....+....-..-...  .....+...+.|+.+++++|.+ +.+...+.-.|.++.|++++|.+...  ..++.+++|+
T Consensus       256 ~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I-~~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~  332 (490)
T KOG1259|consen  256 LPETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLI-TQIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQ  332 (490)
T ss_pred             cchhhhcCccCCCCCccCCceEEecchHhhhhhccccccch-hhhhhhhhhccceeEEeccccceeee--hhhhhcccce
Confidence            11111110000000000  0011112233444555555332 22333333344555555555433322  1244445555


Q ss_pred             EEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC--hhhhcCCccceec
Q 020238          165 SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP--ESIIHLSKLAYLK  242 (329)
Q Consensus       165 ~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~  242 (329)
                      .|++++|.+..+...-      ..+-+++.|.+++|.+.++. .+..+-+|..||+++|+|..+.  ..++++|.|+++.
T Consensus       333 ~LDLS~N~Ls~~~Gwh------~KLGNIKtL~La~N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~  405 (490)
T KOG1259|consen  333 LLDLSGNLLAECVGWH------LKLGNIKTLKLAQNKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLR  405 (490)
T ss_pred             EeecccchhHhhhhhH------hhhcCEeeeehhhhhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHh
Confidence            5555555444332211      12334455555555444331 2344445555555555555222  3455556666666


Q ss_pred             ccccc
Q 020238          243 LSYCE  247 (329)
Q Consensus       243 l~~~~  247 (329)
                      +.+|+
T Consensus       406 L~~NP  410 (490)
T KOG1259|consen  406 LTGNP  410 (490)
T ss_pred             hcCCC
Confidence            65554

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.95  E-value=2.4e-11  Score=99.16  Aligned_cols=175  Identities=18%  Similarity=0.141  Sum_probs=91.7

Q ss_pred             CCCEEEcCCCCCcc-cCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc-cccccChhhhhccccCCCCC
Q 020238          114 GLSALYLDHCKRLK-SLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT-AIREVPLSIVRLNNFDGLQN  191 (329)
Q Consensus       114 ~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~  191 (329)
                      .+++++++...+.. .+...+..+.+|+.|.+.+....+.+...++....|+.++++++ +++......-    +..|+.
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll----~~scs~  261 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLL----LSSCSR  261 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHH----HHhhhh
Confidence            46666666543322 12233455666666666665555555455555566666666654 3332222111    345666


Q ss_pred             ccEEEcCCCCCCC--cchhhcC-CCCccEEEcCCCc--C--ccCChhhhcCCccceecccccccccccC----CCCCCcc
Q 020238          192 LTSLYLTDCGITE--LPENLGQ-LSLLLELYLEKNN--F--ERLPESIIHLSKLAYLKLSYCERLQSLP----KLPCNLS  260 (329)
Q Consensus       192 L~~L~l~~~~l~~--~~~~~~~-~~~L~~L~l~~~~--i--~~~~~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~  260 (329)
                      |.+|+++.|.++.  +...+.. -++|++|+++|+.  +  +.+.....++++|.+||++.|..++.--    -.++.|+
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            6677776665443  2222222 4566677777662  1  1333334567777777777766554300    2345677


Q ss_pred             EEeccCCCCCcCC-CCCCCCCCCCcEEEcCCCc
Q 020238          261 ELDAHHCTALESS-PGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       261 ~L~l~~c~~l~~~-~~~~~~~~~L~~L~i~~~~  292 (329)
                      +|.++.|..+..- -..+...+.|.+||+-||-
T Consensus       342 ~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  342 HLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            7777777655210 0112344567777777763

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.82  E-value=7.5e-11  Score=100.45  Aligned_cols=258  Identities=19%  Similarity=0.250  Sum_probs=172.6

Q ss_pred             hhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCccc--CccccCCCcccEEeecCCCCCCC--Cc-c
Q 020238           11 DSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRIL--PPGIFRLEFLKELDLWGCSKLKT--LP-E   85 (329)
Q Consensus        11 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~--~~-~   85 (329)
                      .....||+++.|++.+|..+++........+|++|++|++..|...+..  -.-...|++|++++++.|.-+..  +. -
T Consensus       158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~  237 (483)
T KOG4341|consen  158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQAL  237 (483)
T ss_pred             HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHH
Confidence            3367899999999999998888776667889999999999998766632  22335699999999999975533  22 2


Q ss_pred             cCCCCCccEEEecCcc-cc--ccchhhhcCCCCCEEEcCCCCCcccCC--ccccCCCCCcEEeccCCCCCCCCCc--ccC
Q 020238           86 ISSAGNIEVMYLNGTA-IE--ELPSSIECLSGLSALYLDHCKRLKSLP--SSLCKLKSLNSIYLRWCSSLKSLPN--ELG  158 (329)
Q Consensus        86 ~~~~~~L~~L~l~~~~-i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~--~~~  158 (329)
                      ..+...++.+...++. .+  .+-..-+.++.+-.+++..|..++...  ..-..+..|+++..++|...+..+-  -..
T Consensus       238 ~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~  317 (483)
T KOG4341|consen  238 QRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQ  317 (483)
T ss_pred             hccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhc
Confidence            2233446666555432 11  121222345566667766765544332  2234577889999988776654332  235


Q ss_pred             CCccCcEEeccCccc-cccChhhhhccccCCCCCccEEEcCCCCCC-C--cchhhcCCCCccEEEcCCCc-Cc-c-C---
Q 020238          159 NLEALNSLNAEGTAI-REVPLSIVRLNNFDGLQNLTSLYLTDCGIT-E--LPENLGQLSLLLELYLEKNN-FE-R-L---  228 (329)
Q Consensus       159 ~l~~L~~L~l~~~~l-~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~--~~~~~~~~~~L~~L~l~~~~-i~-~-~---  228 (329)
                      +..+|+.+.++++.. ........    -.+++.|+.+++.++... +  +.....+++.|+.+.+++|. |+ + +   
T Consensus       318 ~~~~L~~l~l~~c~~fsd~~ft~l----~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l  393 (483)
T KOG4341|consen  318 HCHNLQVLELSGCQQFSDRGFTML----GRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHL  393 (483)
T ss_pred             CCCceEEEeccccchhhhhhhhhh----hcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhh
Confidence            678899999988752 22221110    246788999999998443 2  55556779999999999884 33 1 1   


Q ss_pred             ChhhhcCCccceecccccccccccC----CCCCCccEEeccCCCCCcC
Q 020238          229 PESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALES  272 (329)
Q Consensus       229 ~~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~  272 (329)
                      ...-.....|+.+.+++|+.+++-.    ..+++|+++++.+|..+..
T Consensus       394 ~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk  441 (483)
T KOG4341|consen  394 SSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTK  441 (483)
T ss_pred             hhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhh
Confidence            1223456789999999999876543    4567999999999987643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.74  E-value=2.1e-09  Score=86.86  Aligned_cols=184  Identities=18%  Similarity=0.149  Sum_probs=108.3

Q ss_pred             cCCCCCccEEEecCcccc-ccc----hhhhcCCCCCEEEcCCCCCcccC----C---------ccccCCCCCcEEeccCC
Q 020238           86 ISSAGNIEVMYLNGTAIE-ELP----SSIECLSGLSALYLDHCKRLKSL----P---------SSLCKLKSLNSIYLRWC  147 (329)
Q Consensus        86 ~~~~~~L~~L~l~~~~i~-~~~----~~~~~l~~L~~L~l~~~~~~~~~----~---------~~~~~l~~L~~L~l~~~  147 (329)
                      +.++|++++.++++|.+. ..|    ..+++-..|.+|.+.+|.+-...    .         ....+-|.|++.....|
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN  167 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN  167 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence            344455555555555544 222    23444556666666665532110    0         11234567888887775


Q ss_pred             CCCCC----CCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-----cchhhcCCCCccEE
Q 020238          148 SSLKS----LPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-----LPENLGQLSLLLEL  218 (329)
Q Consensus       148 ~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L  218 (329)
                      +.-..    ....+.....|+.+.+..|+|+.-.........+.++.+|+.||+.+|.++.     +...+..++.|+.|
T Consensus       168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL  247 (388)
T COG5238         168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL  247 (388)
T ss_pred             hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence            54321    1123444568899999999887432222222225678999999999998874     45567788999999


Q ss_pred             EcCCCcCc--cCChhhh-----cCCccceeccccccccccc------C----CCCCCccEEeccCCCC
Q 020238          219 YLEKNNFE--RLPESII-----HLSKLAYLKLSYCERLQSL------P----KLPCNLSELDAHHCTA  269 (329)
Q Consensus       219 ~l~~~~i~--~~~~~l~-----~~~~L~~L~l~~~~~l~~~------~----~~~~~L~~L~l~~c~~  269 (329)
                      .+..|-++  .....+.     ..|+|..|...+|..-..+      +    ...|-|..|.+.+|..
T Consensus       248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~  315 (388)
T COG5238         248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRI  315 (388)
T ss_pred             cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcc
Confidence            99999776  2222222     2677888888877543211      1    2345666666776653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=3e-10  Score=92.88  Aligned_cols=175  Identities=20%  Similarity=0.249  Sum_probs=128.4

Q ss_pred             CCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC--cccCCCccCcE
Q 020238           90 GNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP--NELGNLEALNS  165 (329)
Q Consensus        90 ~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~  165 (329)
                      .+++.+|++...++  .+...+..|.+|+.|.+.++...+.+...++.-.+|+.++++.|+..+...  ..+.+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            56888999988877  455567788999999999988777776777788899999999988776543  33678899999


Q ss_pred             EeccCccccc--cChhhhhccccCCCCCccEEEcCCC--CCC--CcchhhcCCCCccEEEcCCC-cCc-cCChhhhcCCc
Q 020238          166 LNAEGTAIRE--VPLSIVRLNNFDGLQNLTSLYLTDC--GIT--ELPENLGQLSLLLELYLEKN-NFE-RLPESIIHLSK  237 (329)
Q Consensus       166 L~l~~~~l~~--~~~~~~~~~~~~~~~~L~~L~l~~~--~l~--~~~~~~~~~~~L~~L~l~~~-~i~-~~~~~l~~~~~  237 (329)
                      |+++.+.+..  +...+..     --++|+.|+++|+  .+.  .+......||+|..||+++| .++ .....+.+++.
T Consensus       265 LNlsWc~l~~~~Vtv~V~h-----ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~  339 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAH-----ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNY  339 (419)
T ss_pred             cCchHhhccchhhhHHHhh-----hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcch
Confidence            9999987652  1111111     1367888999987  222  24445677999999999998 455 45567788999


Q ss_pred             cceecccccccccc---cC-CCCCCccEEeccCCCC
Q 020238          238 LAYLKLSYCERLQS---LP-KLPCNLSELDAHHCTA  269 (329)
Q Consensus       238 L~~L~l~~~~~l~~---~~-~~~~~L~~L~l~~c~~  269 (329)
                      |++|.++.|..+-.   +. ...|+|.+|++.+|-.
T Consensus       340 L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  340 LQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS  375 (419)
T ss_pred             heeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence            99999999976521   10 3457999999988853

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=3.1e-08  Score=63.32  Aligned_cols=60  Identities=25%  Similarity=0.259  Sum_probs=50.1

Q ss_pred             CCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCC
Q 020238           17 GKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCS   78 (329)
Q Consensus        17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   78 (329)
                      |+|++|++++|+ +..++.. .+.++++|++|++++|.+...-+..|.++++|++|++++|.
T Consensus         1 p~L~~L~l~~n~-l~~i~~~-~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNK-LTEIPPD-SFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSST-ESEECTT-TTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCC-CCccCHH-HHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            578999999986 7777653 78889999999999988877667788889999999999875

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.62  E-value=8.8e-09  Score=84.44  Aligned_cols=84  Identities=20%  Similarity=0.232  Sum_probs=41.8

Q ss_pred             cCcccCcEEeccCCCCCc--ccCccccCCCcccEEeecCCCCCCCCcccC-CCCCccEEEecCcccc--ccchhhhcCCC
Q 020238           40 LHLDKLVNLNLNNCKSLR--ILPPGIFRLEFLKELDLWGCSKLKTLPEIS-SAGNIEVMYLNGTAIE--ELPSSIECLSG  114 (329)
Q Consensus        40 ~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~i~--~~~~~~~~l~~  114 (329)
                      ..+.+++++|+.+|.+..  .+...+.++|.|+.|+++.|+....+.... ...+|+.+.+.++.+.  .....+..+|.
T Consensus        68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            344556666666655433  333444556666666666555444443332 2345555555555544  22333444555


Q ss_pred             CCEEEcCCC
Q 020238          115 LSALYLDHC  123 (329)
Q Consensus       115 L~~L~l~~~  123 (329)
                      ++.|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            555555544

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.60  E-value=5.5e-08  Score=62.17  Aligned_cols=56  Identities=38%  Similarity=0.567  Sum_probs=26.7

Q ss_pred             CccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhhcCCccceeccccc
Q 020238          191 NLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYC  246 (329)
Q Consensus       191 ~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~  246 (329)
                      +|+.|++++|+++.++. .+..+++|+.|++++|.++.++ ..+..+++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence            34444555554444442 3344555555555555554443 34445555555555544

...

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=1.5e-07  Score=88.81  Aligned_cols=107  Identities=24%  Similarity=0.368  Sum_probs=85.8

Q ss_pred             cCcEEeccCcccc-ccChhhhhccccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCc-cCChhhhcCCcc
Q 020238          162 ALNSLNAEGTAIR-EVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFE-RLPESIIHLSKL  238 (329)
Q Consensus       162 ~L~~L~l~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~~L  238 (329)
                      .++.|+++++.+. .+|..      +..+++|+.|++++|.+.+ +|..+..+++|+.|++++|+++ .+|..+.++++|
T Consensus       419 ~v~~L~L~~n~L~g~ip~~------i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L  492 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPND------ISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL  492 (623)
T ss_pred             EEEEEECCCCCccccCCHH------HhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCC
Confidence            3778888888887 44544      3668899999999999985 8888899999999999999998 788889999999


Q ss_pred             ceecccccccccccCCCC----CCccEEeccCCCCCcCCC
Q 020238          239 AYLKLSYCERLQSLPKLP----CNLSELDAHHCTALESSP  274 (329)
Q Consensus       239 ~~L~l~~~~~l~~~~~~~----~~L~~L~l~~c~~l~~~~  274 (329)
                      +.|++++|.....+|..+    .++..+++.+|+.+...|
T Consensus       493 ~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        493 RILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CEEECcCCcccccCChHHhhccccCceEEecCCccccCCC
Confidence            999999988777777432    356788888887765443

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.58  E-value=6.6e-07  Score=78.31  Aligned_cols=55  Identities=24%  Similarity=0.526  Sum_probs=25.8

Q ss_pred             CCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCC
Q 020238           90 GNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS  149 (329)
Q Consensus        90 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  149 (329)
                      .+++.|+++++.+..+|.   -..+|++|.+++|..+..+|..+  .++|+.|++++|..
T Consensus        52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~  106 (426)
T PRK15386         52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPE  106 (426)
T ss_pred             cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccc
Confidence            445555555555554441   11245555555544444444332  23455555555433

>PLN03150 hypothetical protein; Provisional

Probab=98.53  E-value=3.1e-07  Score=86.70  Aligned_cols=104  Identities=27%  Similarity=0.324  Sum_probs=70.5

Q ss_pred             ccEEeecCCCCCCCCc-ccCCCCCccEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccC
Q 020238           69 LKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRW  146 (329)
Q Consensus        69 L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  146 (329)
                      ++.|++++|.+.+.+| .+..+++|+.|++++|.+. .+|..++.+++|+.|++++|.+...+|..+.++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            5666777766655554 3555577777777777765 5666677777777777777777667777777777777777777


Q ss_pred             CCCCCCCCcccCCC-ccCcEEeccCcc
Q 020238          147 CSSLKSLPNELGNL-EALNSLNAEGTA  172 (329)
Q Consensus       147 ~~~~~~~~~~~~~l-~~L~~L~l~~~~  172 (329)
                      |...+.+|..+... .++..+++.+|.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            77777777665432 345566666664

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.51  E-value=2.2e-08  Score=90.25  Aligned_cols=195  Identities=26%  Similarity=0.234  Sum_probs=90.3

Q ss_pred             CCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEE
Q 020238           16 NGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM   95 (329)
Q Consensus        16 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L   95 (329)
                      +..++.+.+..+. +.....  .+..+.+|+.|++.+|.+.+ +...+..+++|++|++++|. +..+..+..++.|+.|
T Consensus        71 l~~l~~l~l~~n~-i~~~~~--~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~-I~~i~~l~~l~~L~~L  145 (414)
T KOG0531|consen   71 LTSLKELNLRQNL-IAKILN--HLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNK-ITKLEGLSTLTLLKEL  145 (414)
T ss_pred             hHhHHhhccchhh-hhhhhc--ccccccceeeeeccccchhh-cccchhhhhcchheeccccc-cccccchhhccchhhh
Confidence            3444444444443 332121  24556666666666655333 22224456666666666643 3344444555556666


Q ss_pred             EecCccccccchhhhcCCCCCEEEcCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccc
Q 020238           96 YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR  174 (329)
Q Consensus        96 ~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  174 (329)
                      ++.+|.+..+.. +..++.|+.+++++|.+...-+ . ...+..++.+++.+|......  .+..+..+..+++..|.+.
T Consensus       146 ~l~~N~i~~~~~-~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~  221 (414)
T KOG0531|consen  146 NLSGNLISDISG-LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKIS  221 (414)
T ss_pred             eeccCcchhccC-CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccce
Confidence            666666654432 3335666666666655433222 1 344555666666654433221  1112222223344444433


Q ss_pred             ccChhhhhccccCCCCC--ccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc
Q 020238          175 EVPLSIVRLNNFDGLQN--LTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       175 ~~~~~~~~~~~~~~~~~--L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~  226 (329)
                      .+..       +.....  |+.+++.++.+...+..+..++.+..+++..+++.
T Consensus       222 ~~~~-------l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~  268 (414)
T KOG0531|consen  222 KLEG-------LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRIS  268 (414)
T ss_pred             eccC-------cccchhHHHHHHhcccCccccccccccccccccccchhhcccc
Confidence            2211       011111  45555555555544333444555555555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.48  E-value=1.9e-08  Score=90.61  Aligned_cols=193  Identities=31%  Similarity=0.354  Sum_probs=99.6

Q ss_pred             CcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCccEEEecCccccccchhhhcCCCCCEEE
Q 020238           41 HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSGLSALY  119 (329)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~  119 (329)
                      .+..++.+++..+.+.+ +-..+..+.+|+.+++.+|.+. .+.. +..+++|+.|++++|.|..+. .+..++.|+.|+
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~  146 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELN  146 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccccc-chhhccchhhhe
Confidence            34455555555544333 2222445566666666665433 3333 555566677777766666443 244555566666


Q ss_pred             cCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC-cccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238          120 LDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP-NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT  198 (329)
Q Consensus       120 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  198 (329)
                      +.+|.+...  ..+..++.|+.+++++|.....-+ . ...+.+++.+.+.+|.+..+...       ..+..+..+++.
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~-------~~~~~l~~~~l~  216 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGL-------DLLKKLVLLSLL  216 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccch-------HHHHHHHHhhcc
Confidence            666554321  123335666666666654443322 1 34555666666666665543211       112333444555


Q ss_pred             CCCCCCcchhhcCCC--CccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238          199 DCGITELPENLGQLS--LLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       199 ~~~l~~~~~~~~~~~--~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~  247 (329)
                      .|.++.+.. +....  .|+.+++++|++..++..+..+..+..+++..+.
T Consensus       217 ~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~  266 (414)
T KOG0531|consen  217 DNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNR  266 (414)
T ss_pred             cccceeccC-cccchhHHHHHHhcccCccccccccccccccccccchhhcc
Confidence            555554321 11222  2666666666666554455556666666666543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.39  E-value=2.4e-09  Score=97.50  Aligned_cols=195  Identities=24%  Similarity=0.231  Sum_probs=120.6

Q ss_pred             CCCceEEEecCCCCcccC-CCcccccCcccCcEEeccCCCCCcccCccccCC-CcccEEeecCCCC-------CCCCccc
Q 020238           16 NGKLKQIISRASNFFTKS-PNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRL-EFLKELDLWGCSK-------LKTLPEI   86 (329)
Q Consensus        16 ~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~-------~~~~~~~   86 (329)
                      +++++.+.+.....-... |.  .+..+..|++|.+.+|++...  .++..+ ..|++|--.+ ..       .....++
T Consensus        83 lqkt~~lkl~~~pa~~pt~pi--~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~  157 (1096)
T KOG1859|consen   83 LQKTKVLKLLPSPARDPTEPI--SIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDI  157 (1096)
T ss_pred             HhhheeeeecccCCCCCCCCc--eeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhcccc
Confidence            345555655554422222 32  567788888888888876541  111111 1233322111 10       0111222


Q ss_pred             CCC---CCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcc-cCCCcc
Q 020238           87 SSA---GNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE-LGNLEA  162 (329)
Q Consensus        87 ~~~---~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~  162 (329)
                      .+.   ..|...+.++|.+..+...+.-++.+++|+++.|.+....  .+..+++|+.|++++|... .+|.. ...+. 
T Consensus       158 ~ns~~Wn~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-  233 (1096)
T KOG1859|consen  158 SNSPVWNKLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-  233 (1096)
T ss_pred             ccchhhhhHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-
Confidence            222   4566677778888777777888899999999998765432  5778899999999985443 44432 23343 


Q ss_pred             CcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc--hhhcCCCCccEEEcCCCcCc
Q 020238          163 LNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP--ENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       163 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~i~  226 (329)
                      |+.|.+.+|.++.+..       +.++.+|+.||+++|-+.+..  ..+..+..|+.|.|.||.+-
T Consensus       234 L~~L~lrnN~l~tL~g-------ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  234 LQLLNLRNNALTTLRG-------IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             heeeeecccHHHhhhh-------HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            8888998888776532       456788899999998776532  23556777888888888765

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.38  E-value=4.3e-09  Score=95.87  Aligned_cols=125  Identities=26%  Similarity=0.238  Sum_probs=82.0

Q ss_pred             CCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCcc
Q 020238          114 GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT  193 (329)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~  193 (329)
                      .|...+.++|. +..+...+.-++.++.|++++|......  .+..++.|++|+++.|.++.+|.--     -.+|. |+
T Consensus       165 ~L~~a~fsyN~-L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~-----~~gc~-L~  235 (1096)
T KOG1859|consen  165 KLATASFSYNR-LVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLS-----MVGCK-LQ  235 (1096)
T ss_pred             hHhhhhcchhh-HHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccc-----hhhhh-he
Confidence            34444555543 3334445555777888888886555432  5667788888888888877666422     12343 88


Q ss_pred             EEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC--hhhhcCCccceeccccccc
Q 020238          194 SLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP--ESIIHLSKLAYLKLSYCER  248 (329)
Q Consensus       194 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~~~~~  248 (329)
                      .|.+++|.++.+- .+.++.+|+.||++.|-+.+..  ..++.+..|+.|+|.||+.
T Consensus       236 ~L~lrnN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  236 LLNLRNNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             eeeecccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            8888888777653 3567788888888888766333  3566777788888888764

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.37  E-value=3.4e-06  Score=73.94  Aligned_cols=71  Identities=24%  Similarity=0.488  Sum_probs=38.3

Q ss_pred             CCCcccEEeecCCCCCCCCcccCCCCCccEEEecC-ccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEe
Q 020238           65 RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG-TAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIY  143 (329)
Q Consensus        65 ~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  143 (329)
                      .+.+++.|++++| .+..+|.+  .++|+.|.+++ ..+..+|..+  .++|++|.+++|..+..+|      .+|+.|+
T Consensus        50 ~~~~l~~L~Is~c-~L~sLP~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~  118 (426)
T PRK15386         50 EARASGRLYIKDC-DIESLPVL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLE  118 (426)
T ss_pred             HhcCCCEEEeCCC-CCcccCCC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEE
Confidence            3566777777776 33444421  14577777764 3444444433  2467777777764444333      2355555


Q ss_pred             ccC
Q 020238          144 LRW  146 (329)
Q Consensus       144 l~~  146 (329)
                      +..
T Consensus       119 L~~  121 (426)
T PRK15386        119 IKG  121 (426)
T ss_pred             eCC
Confidence            543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.30  E-value=4.6e-08  Score=71.15  Aligned_cols=104  Identities=22%  Similarity=0.268  Sum_probs=78.0

Q ss_pred             CcEEeccCCCCCC--CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCcc
Q 020238          139 LNSIYLRWCSSLK--SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLL  216 (329)
Q Consensus       139 L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~  216 (329)
                      +..++++.|..+.  ..+..+.+...|...++++|.+.++|..+     -..++.++.+++.+|.++++|..+..++.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kf-----t~kf~t~t~lNl~~neisdvPeE~Aam~aLr  103 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKF-----TIKFPTATTLNLANNEISDVPEELAAMPALR  103 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHH-----hhccchhhhhhcchhhhhhchHHHhhhHHhh
Confidence            4556666665542  22233455567888888888888888776     3456788888898888888888888889999


Q ss_pred             EEEcCCCcCccCChhhhcCCccceecccccc
Q 020238          217 ELYLEKNNFERLPESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       217 ~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~  247 (329)
                      .|+++.|.+...|+.+..+.++..|+..++.
T Consensus       104 ~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen  104 SLNLRFNPLNAEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             hcccccCccccchHHHHHHHhHHHhcCCCCc
Confidence            9999999888888777777777777776643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=1.3e-06  Score=51.31  Aligned_cols=39  Identities=36%  Similarity=0.491  Sum_probs=26.2

Q ss_pred             CccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238          191 NLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP  229 (329)
Q Consensus       191 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~  229 (329)
                      +|++|++++|+++++|..++.+++|+.|++++|+|++++
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence            567777777777777666777777777777777776554

...

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=1.1e-06  Score=72.45  Aligned_cols=83  Identities=20%  Similarity=0.243  Sum_probs=36.1

Q ss_pred             CCccEEEecCcccc---ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCC-CCcccCCCccCcE
Q 020238           90 GNIEVMYLNGTAIE---ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKS-LPNELGNLEALNS  165 (329)
Q Consensus        90 ~~L~~L~l~~~~i~---~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~  165 (329)
                      ..++.+++.+|.++   ++...+.++|.|+.|+++.|+....+..--....+|++|.+.+...... ....+..++.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            44555555555555   2233344555566666555554332211001234555555544322211 1122334455555


Q ss_pred             EeccCcc
Q 020238          166 LNAEGTA  172 (329)
Q Consensus       166 L~l~~~~  172 (329)
                      |.++.|.
T Consensus       151 lHmS~N~  157 (418)
T KOG2982|consen  151 LHMSDNS  157 (418)
T ss_pred             hhhccch
Confidence            5555553

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.99  E-value=4.2e-06  Score=68.20  Aligned_cols=163  Identities=15%  Similarity=0.101  Sum_probs=109.5

Q ss_pred             chhhhcCCCCCEEEcCCCCCcccCCc----cccCCCCCcEEeccCCCCCCCCC-------------cccCCCccCcEEec
Q 020238          106 PSSIECLSGLSALYLDHCKRLKSLPS----SLCKLKSLNSIYLRWCSSLKSLP-------------NELGNLEALNSLNA  168 (329)
Q Consensus       106 ~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~-------------~~~~~l~~L~~L~l  168 (329)
                      .+.+.+||+|+..+++.|.+....|.    .+++-+.|..|.+++|.......             .....-+.|+.+..
T Consensus        85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vic  164 (388)
T COG5238          85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC  164 (388)
T ss_pred             HHHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence            45577899999999999988766554    35677889999998865432211             11234578999999


Q ss_pred             cCccccccChhhhhccccCCCCCccEEEcCCCCCCC--c----chhhcCCCCccEEEcCCCcCc-----cCChhhhcCCc
Q 020238          169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE--L----PENLGQLSLLLELYLEKNNFE-----RLPESIIHLSK  237 (329)
Q Consensus       169 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~----~~~~~~~~~L~~L~l~~~~i~-----~~~~~l~~~~~  237 (329)
                      ..|++...+....... +..-.+|..+.+..|.+..  +    ...+..+++|+.|++..|-++     .+..++...+.
T Consensus       165 grNRlengs~~~~a~~-l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         165 GRNRLENGSKELSAAL-LESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             ccchhccCcHHHHHHH-HHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            9998876554432211 2223688899999998874  1    223456889999999999776     22245566777


Q ss_pred             cceecccccccccc--------cC-CCCCCccEEeccCCCC
Q 020238          238 LAYLKLSYCERLQS--------LP-KLPCNLSELDAHHCTA  269 (329)
Q Consensus       238 L~~L~l~~~~~l~~--------~~-~~~~~L~~L~l~~c~~  269 (329)
                      |+.|.+..|-.-..        +. ...|+|..|...++..
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~  284 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER  284 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence            89999988753311        11 2446777777777754

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.93  E-value=4.3e-06  Score=79.16  Aligned_cols=15  Identities=20%  Similarity=0.067  Sum_probs=7.8

Q ss_pred             CCCccEEEcCCCcCc
Q 020238          212 LSLLLELYLEKNNFE  226 (329)
Q Consensus       212 ~~~L~~L~l~~~~i~  226 (329)
                      +|+|+-||.+++.+.
T Consensus       249 LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  249 LPELRFLDCSGTDIN  263 (699)
T ss_pred             CccccEEecCCcchh
Confidence            455555555555444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.92  E-value=2.8e-05  Score=60.71  Aligned_cols=124  Identities=19%  Similarity=0.192  Sum_probs=85.9

Q ss_pred             ceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCC-CCccEEEe
Q 020238           19 LKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSA-GNIEVMYL   97 (329)
Q Consensus        19 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L~l   97 (329)
                      =+++++.+.+ +..+..  .-.-..+...+|+++|.+...  ..+.+++.|..|.+++|.+...-|.+..+ ++|+.|.+
T Consensus        21 e~e~~LR~lk-ip~ien--lg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~L   95 (233)
T KOG1644|consen   21 ERELDLRGLK-IPVIEN--LGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLIL   95 (233)
T ss_pred             cccccccccc-ccchhh--ccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEe
Confidence            3455666554 222222  112245778889998875542  23567888999999998877766777666 88999999


Q ss_pred             cCccccccc--hhhhcCCCCCEEEcCCCCCcccC---CccccCCCCCcEEeccCC
Q 020238           98 NGTAIEELP--SSIECLSGLSALYLDHCKRLKSL---PSSLCKLKSLNSIYLRWC  147 (329)
Q Consensus        98 ~~~~i~~~~--~~~~~l~~L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~  147 (329)
                      .+|++..+.  ..+..+|.|++|.+-+|.....-   --.+..+++|+.||+..-
T Consensus        96 tnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen   96 TNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             cCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            999888543  34677899999999888765432   234677899999998763

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.92  E-value=9.6e-07  Score=81.34  Aligned_cols=89  Identities=15%  Similarity=0.096  Sum_probs=48.1

Q ss_pred             hcCCCCccEEEcCCCcCccCC--hhhhcCCccceecccccccccccCCCCCCccEEeccCCCCCcCCCCCCCC--CCCCc
Q 020238          209 LGQLSLLLELYLEKNNFERLP--ESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFP--SRDPQ  284 (329)
Q Consensus       209 ~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~--~~~L~  284 (329)
                      ...++.++.+.+..+.+....  ..+..|+.|. ..+..+.      ....+++.|.++.|...+.-......  +..+.
T Consensus       358 ~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~~------~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~  430 (482)
T KOG1947|consen  358 LRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELRL------CRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLK  430 (482)
T ss_pred             HhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHHh------ccCCccceEecccCccccccchHHHhhhhhccc
Confidence            455677777776666533221  2333344442 2211110      11123788888888766543211111  55678


Q ss_pred             EEEcCCCcccchhHHHHHhh
Q 020238          285 YFDLRNNLKLDRNEIREILE  304 (329)
Q Consensus       285 ~L~i~~~~~l~~~~~~~~~~  304 (329)
                      .+++++|+.++......+..
T Consensus       431 ~l~~~~~~~~~~~~~~~~~~  450 (482)
T KOG1947|consen  431 DLDLSGCRVITLKSLEGFAS  450 (482)
T ss_pred             cCCccCcccccchhhhhhhc
Confidence            88888988888777665444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.88  E-value=2.8e-06  Score=78.26  Aligned_cols=236  Identities=25%  Similarity=0.302  Sum_probs=102.3

Q ss_pred             CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCC-CCCcccC----ccccCCCcccEEeecCCCCCCCC--cccC
Q 020238           15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNC-KSLRILP----PGIFRLEFLKELDLWGCSKLKTL--PEIS   87 (329)
Q Consensus        15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~----~~~~~l~~L~~L~l~~~~~~~~~--~~~~   87 (329)
                      .++.|+.+.+.+|..+.+.........+++|++|++++| ......+    .....+++|+.++++++....+.  ..+.
T Consensus       186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~  265 (482)
T KOG1947|consen  186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA  265 (482)
T ss_pred             hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence            466666666666665555332225566667777776652 2111111    12233566666666665532221  1122


Q ss_pred             C-CCCccEEEecCcc-cc--ccchhhhcCCCCCEEEcCCCCCccc--CCccccCCCCCcEEeccCCCCCCCCCcccCCCc
Q 020238           88 S-AGNIEVMYLNGTA-IE--ELPSSIECLSGLSALYLDHCKRLKS--LPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLE  161 (329)
Q Consensus        88 ~-~~~L~~L~l~~~~-i~--~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~  161 (329)
                      . +++|+.|.+..+. ++  .+......++.|++|++++|.....  +.....++++++.+.+.....          +.
T Consensus       266 ~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~  335 (482)
T KOG1947|consen  266 SRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CP  335 (482)
T ss_pred             hhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------Cc
Confidence            1 3455555544333 33  2222334455555555555544321  111122344443333322111          12


Q ss_pred             cCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc--chhhcCCCCccEEEcCCCcCccCChhhhcCCccc
Q 020238          162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL--PENLGQLSLLLELYLEKNNFERLPESIIHLSKLA  239 (329)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~  239 (329)
                      .++.+.+.+...... .... ......++.++.+.+.++...+.  ...+..|+.|. ..+..+        ......++
T Consensus       336 ~l~~~~l~~~~~~~~-d~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~~l~~~--------~~~~~~l~  404 (482)
T KOG1947|consen  336 SLTDLSLSGLLTLTS-DDLA-ELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-ESLELR--------LCRSDSLR  404 (482)
T ss_pred             cHHHHHHHHhhccCc-hhHh-HHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-hHHHHH--------hccCCccc
Confidence            222222222111000 0000 01145677888888777764442  23445566552 211111        11112266


Q ss_pred             eecccccccccccC-----CCCCCccEEeccCCCCCc
Q 020238          240 YLKLSYCERLQSLP-----KLPCNLSELDAHHCTALE  271 (329)
Q Consensus       240 ~L~l~~~~~l~~~~-----~~~~~L~~L~l~~c~~l~  271 (329)
                      .|++..|...+...     .....++.+++.+|+.++
T Consensus       405 ~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  405 VLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT  441 (482)
T ss_pred             eEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence            66666665543322     113456666666666554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.84  E-value=7.1e-06  Score=77.76  Aligned_cols=131  Identities=21%  Similarity=0.168  Sum_probs=72.9

Q ss_pred             ccCcEEeccCCCCCcccC-ccc-cCCCcccEEeecCCCCCC-CCcc-cCCCCCccEEEecCccccccchhhhcCCCCCEE
Q 020238           43 DKLVNLNLNNCKSLRILP-PGI-FRLEFLKELDLWGCSKLK-TLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSGLSAL  118 (329)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~~~-~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L  118 (329)
                      .+|++|+++|......-+ ..+ ..+|.|+.|.+++-.+.. ++.. ..++|+|..||++++.++.+ .+++.+++|++|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            567777777644332111 112 236777777777644322 2222 23347777777777777765 566777777777


Q ss_pred             EcCCCCCcc-cCCccccCCCCCcEEeccCCCCCCCC--C----cccCCCccCcEEeccCcccc
Q 020238          119 YLDHCKRLK-SLPSSLCKLKSLNSIYLRWCSSLKSL--P----NELGNLEALNSLNAEGTAIR  174 (329)
Q Consensus       119 ~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~--~----~~~~~l~~L~~L~l~~~~l~  174 (329)
                      .+.+=.+.. ..-..+..+++|+.||++.-......  .    +-...+++|+.|+.+++.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            776633322 11123556777777777763322211  0    11234677777877776654

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.78  E-value=5.1e-06  Score=60.70  Aligned_cols=111  Identities=17%  Similarity=0.207  Sum_probs=78.0

Q ss_pred             cCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcC-CCCccEEEcCCCcCccCChhhhcCCccce
Q 020238          162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQ-LSLLLELYLEKNNFERLPESIIHLSKLAY  240 (329)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~-~~~L~~L~l~~~~i~~~~~~l~~~~~L~~  240 (329)
                      .+..++++.+.+..++.....   +.....|...++++|.+.++|..+.. ++.+..|++++|.|+++|..++.++.|+.
T Consensus        28 E~h~ldLssc~lm~i~davy~---l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~  104 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYM---LSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRS  104 (177)
T ss_pred             HhhhcccccchhhHHHHHHHH---HhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhh
Confidence            355677777776655544333   34566788899999999999887654 77999999999999999988999999999


Q ss_pred             ecccccccccccCCC--CCCccEEeccCCCCCcCCCCC
Q 020238          241 LKLSYCERLQSLPKL--PCNLSELDAHHCTALESSPGL  276 (329)
Q Consensus       241 L~l~~~~~l~~~~~~--~~~L~~L~l~~c~~l~~~~~~  276 (329)
                      |+++.|+........  +-++-.|+..++. +..++..
T Consensus       105 lNl~~N~l~~~p~vi~~L~~l~~Lds~~na-~~eid~d  141 (177)
T KOG4579|consen  105 LNLRFNPLNAEPRVIAPLIKLDMLDSPENA-RAEIDVD  141 (177)
T ss_pred             cccccCccccchHHHHHHHhHHHhcCCCCc-cccCcHH
Confidence            999998754322222  2344444444443 3334433

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.77  E-value=7.1e-05  Score=58.49  Aligned_cols=106  Identities=16%  Similarity=0.172  Sum_probs=75.0

Q ss_pred             CcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhc-CCCCCEEEcCCCCCcccC-CccccCCCCCcEEec
Q 020238           67 EFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIEC-LSGLSALYLDHCKRLKSL-PSSLCKLKSLNSIYL  144 (329)
Q Consensus        67 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~-l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l  144 (329)
                      .....+|+++|.+ ...+.+..+++|..|.+.+|.|..+.+.+.. +++|..|.+.+|.+...- -..+..++.|++|.+
T Consensus        42 d~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   42 DQFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             cccceecccccch-hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            4567788888654 3566677778899999999999877666654 678999999988764421 133567888999988


Q ss_pred             cCCCCCCCCC---cccCCCccCcEEeccCccc
Q 020238          145 RWCSSLKSLP---NELGNLEALNSLNAEGTAI  173 (329)
Q Consensus       145 ~~~~~~~~~~---~~~~~l~~L~~L~l~~~~l  173 (329)
                      -+|+....--   .-+..+++|+.|++.+-..
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            8876554311   2356788899998876543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.76  E-value=5.3e-05  Score=44.40  Aligned_cols=35  Identities=29%  Similarity=0.449  Sum_probs=21.8

Q ss_pred             CccEEEecCccccccchhhhcCCCCCEEEcCCCCC
Q 020238           91 NIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKR  125 (329)
Q Consensus        91 ~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~  125 (329)
                      +|++|++++|.++.+++.++++++|++|++++|.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            56666666666666666666677777777766654

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.19  E-value=2.3e-05  Score=64.22  Aligned_cols=95  Identities=31%  Similarity=0.351  Sum_probs=63.8

Q ss_pred             ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC--hhhhcCCcc
Q 020238          161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP--ESIIHLSKL  238 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L  238 (329)
                      .+.+.|+.-|+++.++.  +     ...++.|+.|.|+-|+++.+. .+..|+.|++|+|+.|.|.++.  ..+.++|+|
T Consensus        19 ~~vkKLNcwg~~L~DIs--i-----c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDIS--I-----CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHhhhhcccCCCccHHH--H-----HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence            34566666666666542  2     345778888888888888764 3667888888888888877655  456778888


Q ss_pred             ceecccccccccccC--------CCCCCccEEe
Q 020238          239 AYLKLSYCERLQSLP--------KLPCNLSELD  263 (329)
Q Consensus       239 ~~L~l~~~~~l~~~~--------~~~~~L~~L~  263 (329)
                      +.|.|..|+--..-+        ..+|+|+.|+
T Consensus        91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            888888776543333        1345666654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.03  E-value=0.00042  Score=56.47  Aligned_cols=80  Identities=25%  Similarity=0.238  Sum_probs=38.7

Q ss_pred             CCCccEEEcCCC--CCCC-cchhhcCCCCccEEEcCCCcCccC--ChhhhcCCccceeccccccccc------ccCCCCC
Q 020238          189 LQNLTSLYLTDC--GITE-LPENLGQLSLLLELYLEKNNFERL--PESIIHLSKLAYLKLSYCERLQ------SLPKLPC  257 (329)
Q Consensus       189 ~~~L~~L~l~~~--~l~~-~~~~~~~~~~L~~L~l~~~~i~~~--~~~l~~~~~L~~L~l~~~~~l~------~~~~~~~  257 (329)
                      +++|+.|.++.|  .+.. ++..+..+|+|+++++++|+|..+  ...+..+.+|..|++.+|....      .+...++
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~  143 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLP  143 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhh
Confidence            455555555555  2222 333344456666666666655421  1234455556666666554322      1112345


Q ss_pred             CccEEeccCCC
Q 020238          258 NLSELDAHHCT  268 (329)
Q Consensus       258 ~L~~L~l~~c~  268 (329)
                      +|..|+-.++.
T Consensus       144 ~L~~LD~~dv~  154 (260)
T KOG2739|consen  144 SLKYLDGCDVD  154 (260)
T ss_pred             hhccccccccC
Confidence            55555554443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.99  E-value=0.00048  Score=56.14  Aligned_cols=106  Identities=23%  Similarity=0.191  Sum_probs=63.7

Q ss_pred             cCcccCcEEeccCCCCCcccCccccCCCcccEEeecCC--CCCCCCcccCC-CCCccEEEecCcccccc--chhhhcCCC
Q 020238           40 LHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGC--SKLKTLPEISS-AGNIEVMYLNGTAIEEL--PSSIECLSG  114 (329)
Q Consensus        40 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~-~~~L~~L~l~~~~i~~~--~~~~~~l~~  114 (329)
                      .....|+.+.+.++..++.  ..+-.+++|+.|.++.|  +....++.... +|+|+++.+++|++..+  ...+..+.+
T Consensus        40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n  117 (260)
T KOG2739|consen   40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN  117 (260)
T ss_pred             ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence            3445566666666554332  12345678888888887  33344443322 38888888888887632  223566777


Q ss_pred             CCEEEcCCCCCcccC---CccccCCCCCcEEeccCC
Q 020238          115 LSALYLDHCKRLKSL---PSSLCKLKSLNSIYLRWC  147 (329)
Q Consensus       115 L~~L~l~~~~~~~~~---~~~~~~l~~L~~L~l~~~  147 (329)
                      |..|++.+|....-.   ...|.-+++|.+|+-.+.
T Consensus       118 L~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  118 LKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             hhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence            888888887654311   123555777877776553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.98  E-value=0.0061  Score=45.08  Aligned_cols=58  Identities=19%  Similarity=0.113  Sum_probs=18.9

Q ss_pred             hcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEecc
Q 020238          110 ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAE  169 (329)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  169 (329)
                      ..+.+|+.+.+.. .........|.++++++.+.+.+ .....-...|..+.+++.+.+.
T Consensus         9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN-NLTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS-TTSCE-TTTTTT-TT-EEEEET
T ss_pred             hCCCCCCEEEECC-CeeEeChhhcccccccccccccc-cccccceeeeeccccccccccc
Confidence            3444555555443 22222223344444555555543 1111111234444445555543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=6.4e-05  Score=61.70  Aligned_cols=98  Identities=21%  Similarity=0.261  Sum_probs=57.2

Q ss_pred             ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccc--hhhhcCCCCCEEEc
Q 020238           43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELP--SSIECLSGLSALYL  120 (329)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l  120 (329)
                      .+.+.|+..||.+...  .....|+.|++|.|+-|.+ ..+..+..+.+|+.|+|..|.|.++.  .++.++|+|+.|++
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            4555666666654432  1234566666666666443 34445555666777777777666443  35667788888888


Q ss_pred             CCCCCcccCC-----ccccCCCCCcEEe
Q 020238          121 DHCKRLKSLP-----SSLCKLKSLNSIY  143 (329)
Q Consensus       121 ~~~~~~~~~~-----~~~~~l~~L~~L~  143 (329)
                      ..|.=....+     ..+.-+|+|++|+
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            7765443322     2345567777665

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.67  E-value=0.013  Score=43.24  Aligned_cols=15  Identities=20%  Similarity=0.202  Sum_probs=6.0

Q ss_pred             cccCcccCcEEeccC
Q 020238           38 LTLHLDKLVNLNLNN   52 (329)
Q Consensus        38 ~~~~~~~L~~L~l~~   52 (329)
                      .+.++++|+.+.+.+
T Consensus        30 ~F~~~~~l~~i~~~~   44 (129)
T PF13306_consen   30 AFSNCTSLKSINFPN   44 (129)
T ss_dssp             TTTT-TT-SEEEESS
T ss_pred             hcccccccccccccc
Confidence            344444455555444

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.34  E-value=0.00067  Score=53.18  Aligned_cols=85  Identities=15%  Similarity=0.217  Sum_probs=62.7

Q ss_pred             CccEEEcCCCcCc-cCChhhhcCCccceecccccccccc-----cCCCCCCccEEeccCCCCCcCCC-CCCCCCCCCcEE
Q 020238          214 LLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQS-----LPKLPCNLSELDAHHCTALESSP-GLVFPSRDPQYF  286 (329)
Q Consensus       214 ~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~-----~~~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L  286 (329)
                      .++.++.+++.|. +-.+.+.+++.++.|.+.+|..+.+     +....++|+.|++++|+.+++.. .++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            3677788887776 4446778888888888888876643     44667899999999999987653 334566788888


Q ss_pred             EcCCCcccchhH
Q 020238          287 DLRNNLKLDRNE  298 (329)
Q Consensus       287 ~i~~~~~l~~~~  298 (329)
                      .|.+.+.+....
T Consensus       182 ~l~~l~~v~~~e  193 (221)
T KOG3864|consen  182 HLYDLPYVANLE  193 (221)
T ss_pred             HhcCchhhhchH
Confidence            888877765443

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.22  E-value=0.0053  Score=31.25  Aligned_cols=25  Identities=8%  Similarity=0.218  Sum_probs=21.1

Q ss_pred             CCCCcEEEcCCCcccchhHHHHHhh
Q 020238          280 SRDPQYFDLRNNLKLDRNEIREILE  304 (329)
Q Consensus       280 ~~~L~~L~i~~~~~l~~~~~~~~~~  304 (329)
                      +++|++|++++|+++++.++..+..
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~~   25 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALAK   25 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence            4679999999999999999887653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.79  E-value=0.0041  Score=30.27  Aligned_cols=16  Identities=38%  Similarity=0.474  Sum_probs=7.6

Q ss_pred             ccEEEcCCCcCccCCh
Q 020238          215 LLELYLEKNNFERLPE  230 (329)
Q Consensus       215 L~~L~l~~~~i~~~~~  230 (329)
                      |+.|++++|+++.+|.
T Consensus         2 L~~Ldls~n~l~~ip~   17 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPS   17 (22)
T ss_dssp             ESEEEETSSEESEEGT
T ss_pred             ccEEECCCCcCEeCCh
Confidence            4445555554444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.24  E-value=0.013  Score=26.45  Aligned_cols=14  Identities=29%  Similarity=0.256  Sum_probs=4.8

Q ss_pred             CccEEEcCCCcCcc
Q 020238          214 LLLELYLEKNNFER  227 (329)
Q Consensus       214 ~L~~L~l~~~~i~~  227 (329)
                      +|+.|++++|++++
T Consensus         2 ~L~~L~l~~n~L~~   15 (17)
T PF13504_consen    2 NLRTLDLSNNRLTS   15 (17)
T ss_dssp             T-SEEEETSS--SS
T ss_pred             ccCEEECCCCCCCC
Confidence            34444444444433

...

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.21  E-value=0.0084  Score=29.12  Aligned_cols=19  Identities=26%  Similarity=0.471  Sum_probs=11.3

Q ss_pred             ccEEEcCCCCCCCcchhhc
Q 020238          192 LTSLYLTDCGITELPENLG  210 (329)
Q Consensus       192 L~~L~l~~~~l~~~~~~~~  210 (329)
                      |++|++++|.++.+|..++
T Consensus         2 L~~Ldls~n~l~~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEESEEGTTTT
T ss_pred             ccEEECCCCcCEeCChhhc
Confidence            5666666666666655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.32  E-value=0.016  Score=45.69  Aligned_cols=79  Identities=22%  Similarity=0.279  Sum_probs=46.9

Q ss_pred             cCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC-CCCC--cchhhcCCCCccEEEcCCC-cCc-cCChhhhcCC
Q 020238          162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC-GITE--LPENLGQLSLLLELYLEKN-NFE-RLPESIIHLS  236 (329)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--~~~~~~~~~~L~~L~l~~~-~i~-~~~~~l~~~~  236 (329)
                      .++.++.+++.|.....     ..+..++.++.|.+.+| ++.+  +...-...++|+.|++++| +|+ .-...+..++
T Consensus       102 ~IeaVDAsds~I~~eGl-----e~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk  176 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGL-----EHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK  176 (221)
T ss_pred             eEEEEecCCchHHHHHH-----HHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence            45666666665553321     12456677777777776 3333  2111224677888888877 676 3335667777


Q ss_pred             ccceecccc
Q 020238          237 KLAYLKLSY  245 (329)
Q Consensus       237 ~L~~L~l~~  245 (329)
                      +|+.|.+.+
T Consensus       177 nLr~L~l~~  185 (221)
T KOG3864|consen  177 NLRRLHLYD  185 (221)
T ss_pred             hhHHHHhcC
Confidence            777777765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.37  E-value=0.00053  Score=62.44  Aligned_cols=181  Identities=26%  Similarity=0.260  Sum_probs=104.9

Q ss_pred             CcEEeccCCCCCcc----cCccccCCCcccEEeecCCCCCCCCc-----ccCCC-CCccEEEecCcccc-----ccchhh
Q 020238           45 LVNLNLNNCKSLRI----LPPGIFRLEFLKELDLWGCSKLKTLP-----EISSA-GNIEVMYLNGTAIE-----ELPSSI  109 (329)
Q Consensus        45 L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~-----~~~~~-~~L~~L~l~~~~i~-----~~~~~~  109 (329)
                      +..+.+.+|.+...    +..++..+++|+.|++++|.+...-.     .+... ..+++|.+..+.++     .+...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            66777777765442    34455667788888888877663211     12222 44556666666555     234455


Q ss_pred             hcCCCCCEEEcCCCCCccc----CCcccc----CCCCCcEEeccCCCCCCC----CCcccCCCcc-CcEEeccCcccccc
Q 020238          110 ECLSGLSALYLDHCKRLKS----LPSSLC----KLKSLNSIYLRWCSSLKS----LPNELGNLEA-LNSLNAEGTAIREV  176 (329)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~~----~~~~~~----~l~~L~~L~l~~~~~~~~----~~~~~~~l~~-L~~L~l~~~~l~~~  176 (329)
                      .....++.+++..|.+...    ++..+.    ...++++|.+.+|.....    +...+...+. +..+++..|.+.+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            5677778888877766421    222233    356677888877665532    1122333444 55577777776643


Q ss_pred             ChhhhhccccCCC-CCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc
Q 020238          177 PLSIVRLNNFDGL-QNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       177 ~~~~~~~~~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~  226 (329)
                      .... -.+.+..+ ..++++++.+|++++     +...+..++.++.+.+..|.+.
T Consensus       249 g~~~-L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  249 GVEK-LLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHH-HHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence            1110 00113334 567888888887775     4555667778888888888765

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.25  E-value=0.0008  Score=61.31  Aligned_cols=179  Identities=20%  Similarity=0.201  Sum_probs=98.2

Q ss_pred             ccEEeecCCCCCCCCc-----ccCCCCCccEEEecCccccc-----cchhhhcC-CCCCEEEcCCCCCccc----CCccc
Q 020238           69 LKELDLWGCSKLKTLP-----EISSAGNIEVMYLNGTAIEE-----LPSSIECL-SGLSALYLDHCKRLKS----LPSSL  133 (329)
Q Consensus        69 L~~L~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~i~~-----~~~~~~~l-~~L~~L~l~~~~~~~~----~~~~~  133 (329)
                      +..+++.+|.+.....     .+...+.|+.|++++|.+..     +...+... ..+++|++..|.....    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            6677777776554322     23444777778888777761     11122222 4566677766665433    23445


Q ss_pred             cCCCCCcEEeccCCCCCCC----CCcc----cCCCccCcEEeccCccccccChhhhhccccCCCCC-ccEEEcCCCCCCC
Q 020238          134 CKLKSLNSIYLRWCSSLKS----LPNE----LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQN-LTSLYLTDCGITE  204 (329)
Q Consensus       134 ~~l~~L~~L~l~~~~~~~~----~~~~----~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~  204 (329)
                      .....++.+++..|.....    .+..    +....++++|+++++.+.......... .+...+. +..+++..|.+.+
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~-~l~~~~~~~~el~l~~n~l~d  247 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDE-VLASGESLLRELDLASNKLGD  247 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHH-HHhccchhhHHHHHHhcCcch
Confidence            5566777777777655321    1122    223556777777777665221111110 0233333 5557777776664


Q ss_pred             -----cchhhcCC-CCccEEEcCCCcCc-----cCChhhhcCCccceeccccccc
Q 020238          205 -----LPENLGQL-SLLLELYLEKNNFE-----RLPESIIHLSKLAYLKLSYCER  248 (329)
Q Consensus       205 -----~~~~~~~~-~~L~~L~l~~~~i~-----~~~~~l~~~~~L~~L~l~~~~~  248 (329)
                           +...+... +.++.++++.|.|+     .+.+.+..++.++.+.++.|+.
T Consensus       248 ~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l  302 (478)
T KOG4308|consen  248 VGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPL  302 (478)
T ss_pred             HHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcc
Confidence                 23334444 56677777777765     2334555666777777776553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.25  E-value=0.16  Score=25.61  Aligned_cols=18  Identities=39%  Similarity=0.493  Sum_probs=11.0

Q ss_pred             CCccEEEcCCCcCccCCh
Q 020238          213 SLLLELYLEKNNFERLPE  230 (329)
Q Consensus       213 ~~L~~L~l~~~~i~~~~~  230 (329)
                      ++|+.|++++|+|+.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00369        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456666666666666654

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.25  E-value=0.16  Score=25.61  Aligned_cols=18  Identities=39%  Similarity=0.493  Sum_probs=11.0

Q ss_pred             CCccEEEcCCCcCccCCh
Q 020238          213 SLLLELYLEKNNFERLPE  230 (329)
Q Consensus       213 ~~L~~L~l~~~~i~~~~~  230 (329)
                      ++|+.|++++|+|+.+|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~   19 (26)
T smart00370        2 PNLRELDLSNNQLSSLPP   19 (26)
T ss_pred             CCCCEEECCCCcCCcCCH
Confidence            456666666666666654

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=89.62  E-value=0.47  Score=23.28  Aligned_cols=21  Identities=19%  Similarity=0.314  Sum_probs=14.1

Q ss_pred             CCCcEEEcCCCcccchhHHHHH
Q 020238          281 RDPQYFDLRNNLKLDRNEIREI  302 (329)
Q Consensus       281 ~~L~~L~i~~~~~l~~~~~~~~  302 (329)
                      +.|++|+|++|. +++.....+
T Consensus         2 ~~L~~L~l~~n~-i~~~g~~~l   22 (24)
T PF13516_consen    2 PNLETLDLSNNQ-ITDEGASAL   22 (24)
T ss_dssp             TT-SEEE-TSSB-EHHHHHHHH
T ss_pred             CCCCEEEccCCc-CCHHHHHHh
Confidence            568888888887 777776665

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=83.30  E-value=0.83  Score=23.07  Aligned_cols=18  Identities=39%  Similarity=0.567  Sum_probs=12.8

Q ss_pred             CCccEEEcCCCcCccCCh
Q 020238          213 SLLLELYLEKNNFERLPE  230 (329)
Q Consensus       213 ~~L~~L~l~~~~i~~~~~  230 (329)
                      +.|+.|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            457777777777777764

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=81.82  E-value=0.86  Score=41.76  Aligned_cols=75  Identities=20%  Similarity=0.110  Sum_probs=46.6

Q ss_pred             CCCCccEEEcCCCCCCC---cchhhcCCCCccEEEcCCC--cCccCChhhh--cCCccceecccccccccccC-------
Q 020238          188 GLQNLTSLYLTDCGITE---LPENLGQLSLLLELYLEKN--NFERLPESII--HLSKLAYLKLSYCERLQSLP-------  253 (329)
Q Consensus       188 ~~~~L~~L~l~~~~l~~---~~~~~~~~~~L~~L~l~~~--~i~~~~~~l~--~~~~L~~L~l~~~~~l~~~~-------  253 (329)
                      +.+.+..+.+++|.+..   +.......|.|+.|+|++|  .+...+ .+.  ....|++|-+.||+.-+...       
T Consensus       216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~  294 (585)
T KOG3763|consen  216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELDKLKGLPLEELVLEGNPLCTTFSDRSEYVS  294 (585)
T ss_pred             CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhhhhcCCCHHHeeecCCccccchhhhHHHHH
Confidence            45677778888886655   3333445788888888888  333222 222  23467788888877654433       


Q ss_pred             ---CCCCCccEEe
Q 020238          254 ---KLPCNLSELD  263 (329)
Q Consensus       254 ---~~~~~L~~L~  263 (329)
                         +.+|+|..|+
T Consensus       295 ~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  295 AIRELFPKLLRLD  307 (585)
T ss_pred             HHHHhcchheeec
Confidence               4567777664

>PF07725 LRR_3: Leucine Rich Repeat; InterPro: IPR011713 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=80.33  E-value=0.96  Score=21.25  Aligned_cols=13  Identities=38%  Similarity=1.066  Sum_probs=11.0

Q ss_pred             CCCCchhhhhhhc
Q 020238            1 MPHGNIQQLWDSV   13 (329)
Q Consensus         1 l~~~~~~~l~~~~   13 (329)
                      |++|+++++|++.
T Consensus         7 m~~S~lekLW~G~   19 (20)
T PF07725_consen    7 MPYSKLEKLWEGV   19 (20)
T ss_pred             CCCCChHHhcCcc
Confidence            5789999999875

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by the IPR001611 from INTERPRO model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	329
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-43
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-41
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-23
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-24
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-20
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-16
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-22
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-12
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-12
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-23
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	7e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-20
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-16
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-17
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-12
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-09
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-10
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-16
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-09
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-10
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-16
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-10
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-14
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-13
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	6e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-10
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-15
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-15
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-15
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-14
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-08
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-14
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	8e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-07
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-14
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-13
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-11
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-13
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-09
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-09
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-11
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-11
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-12
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	5e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-11
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-11
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-09
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-09
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-04
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-09
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-07
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-07
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	1e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	8e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	9e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	1e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  151 bits (383), Expect = 2e-43
 Identities = 68/261 (26%), Positives = 99/261 (37%), Gaps = 21/261 (8%)

Query: 14  QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELD 73
           Q N    QI +R       + +          V L L +   L   P   FRL  L+ + 
Sbjct: 52  QANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMT 110

Query: 74  LWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSS 132
           +     L  LP  +     +E + L    +  LP+SI  L+ L  L +  C  L  LP  
Sbjct: 111 IDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEP 169

Query: 133 LCK---------LKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRL 183
           L           L +L S+ L   + ++SLP  + NL+ L SL    + +  +  +I  L
Sbjct: 170 LASTDASGEHQGLVNLQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHL 228

Query: 184 NNFDGLQNLTSLYLTDC-GITELPENLGQLSLLLELYL-EKNNFERLPESIIHLSKLAYL 241
                   L  L L  C  +   P   G  + L  L L + +N   LP  I  L++L  L
Sbjct: 229 ------PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL 282

Query: 242 KLSYCERLQSLPKLPCNLSEL 262
            L  C  L  LP L   L   
Sbjct: 283 DLRGCVNLSRLPSLIAQLPAN 303

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  146 bits (371), Expect = 1e-41
 Identities = 64/265 (24%), Positives = 101/265 (38%), Gaps = 26/265 (9%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRL--EFLKELDLWGCSKLKTLP 84
            N      + +          +     ++L+     +          L+L     L   P
Sbjct: 39  YNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSV-PLPQFP 97

Query: 85  -EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIY 143
            +     +++ M ++   + ELP +++  +GL  L L     L++LP+S+  L  L  + 
Sbjct: 98  DQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELS 156

Query: 144 LRWCSSLKSLPNELGNLEA---------LNSLNAEGTAIREVPLSIVRLNNFDGLQNLTS 194
           +R C  L  LP  L + +A         L SL  E T IR +P SI  L      QNL S
Sbjct: 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL------QNLKS 210

Query: 195 LYLTDCGITELPENLGQLSLLLELYLEKNN-FERLPESIIHLSKLAYLKLSYCERLQSLP 253
           L + +  ++ L   +  L  L EL L         P      + L  L L  C  L +LP
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLP 270

Query: 254 ----KLPCNLSELDAHHCTALESSP 274
               +L   L +LD   C  L   P
Sbjct: 271 LDIHRLT-QLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  131 bits (333), Expect = 4e-36
 Identities = 56/288 (19%), Positives = 96/288 (33%), Gaps = 31/288 (10%)

Query: 36  HSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEIS-------- 87
           H    H     NL      +LR     + + +     D             +        
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64

Query: 88  --------------SAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSL 133
                         +      + L    + + P     LS L  + +D    L  LP ++
Sbjct: 65  GRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTM 123

Query: 134 CKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT-AIREVPLSIVRLNNFDGLQNL 192
            +   L ++ L     L++LP  + +L  L  L+      + E+P  +   +     Q L
Sbjct: 124 QQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182

Query: 193 TSL---YLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERL 249
            +L    L   GI  LP ++  L  L  L +  +    L  +I HL KL  L L  C  L
Sbjct: 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTAL 242

Query: 250 QSLPKLPCNLS---ELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKL 294
           ++ P +    +    L    C+ L + P  +      +  DLR  + L
Sbjct: 243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (318), Expect = 5e-34
 Identities = 57/231 (24%), Positives = 84/231 (36%), Gaps = 43/231 (18%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE----------ISSAG 90
               L  L L     LR LP  I  L  L+EL +  C +L  LPE               
Sbjct: 125 QFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLV 183

Query: 91  NIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSL 150
           N++ + L  T I  LP+SI  L  L +L + +   L +L  ++  L  L  + LR C++L
Sbjct: 184 NLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTAL 242

Query: 151 KSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC-GITELPENL 209
           ++ P   G                                 L  L L DC  +  LP ++
Sbjct: 243 RNYPPIFGGR-----------------------------APLKRLILKDCSNLLTLPLDI 273

Query: 210 GQLSLLLELYLEKN-NFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNL 259
            +L+ L +L L    N  RLP  I  L     + +    + Q     P   
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 96.9 bits (242), Expect = 3e-23
 Identities = 35/207 (16%), Positives = 65/207 (31%), Gaps = 15/207 (7%)

Query: 102 IEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLE 161
           +          SG   LY      L+     L + +   +       S         N  
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSN 56

Query: 162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLE 221
                   G A++     +             +L L    + + P+   +LS L  + ++
Sbjct: 57  NPQIETRTGRALKATADLLEDAT----QPGRVALELRSVPLPQFPDQAFRLSHLQHMTID 112

Query: 222 KNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLS---ELDAHHCTALESSPGLVF 278
                 LP+++   + L  L L+    L++LP    +L+   EL    C  L   P  + 
Sbjct: 113 AAGLMELPDTMQQFAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLA 171

Query: 279 PSRDPQYFDLRNNLK---LDRNEIREI 302
            +          NL+   L+   IR +
Sbjct: 172 STDASGEHQGLVNLQSLRLEWTGIRSL 198

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 3/125 (2%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYL-N 98
           +L  L +L + N   L  L P I  L  L+ELDL GC+ L+  P        ++ + L +
Sbjct: 204 NLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKD 262

Query: 99  GTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELG 158
            + +  LP  I  L+ L  L L  C  L  LPS + +L +   I +      +   +   
Sbjct: 263 CSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

Query: 159 NLEAL 163
              A 
Sbjct: 323 ARPAE 327

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  103 bits (259), Expect = 1e-24
 Identities = 36/300 (12%), Positives = 87/300 (29%), Gaps = 19/300 (6%)

Query: 4   GNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGI 63
                    +  N   +Q      ++     ++        L+   +N+    + +    
Sbjct: 120 NERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179

Query: 64  FRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDH 122
                  ++     + +  +   +     +   Y+  +       +            ++
Sbjct: 180 RITLKDTQIGQLS-NNITFVSKAVMRLTKLRQFYMGNSPF----VAENICEAWENENSEY 234

Query: 123 CKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEG---TAIREVPLS 179
            ++ K+       LK L  + +  C +L  LP  L  L  +  +N       +  ++   
Sbjct: 235 AQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD 294

Query: 180 IVRLNNFDGLQNLTSLYLTDCGITEL--PENLGQLSLLLELYLEKNNFERLPESIIHLSK 237
              L +    + +  +Y+    +       +L ++  L  L    N  E    +     K
Sbjct: 295 WQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIK 354

Query: 238 LAYLKLSYCERLQSLPK----LPCNLSELDAHHCTALESSPGLVFPSRDP--QYFDLRNN 291
           LA L L+Y  ++  +P         +  L   H   L+  P +            D   N
Sbjct: 355 LASLNLAYN-QITEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYN 412

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 93.6 bits (233), Expect = 2e-21
 Identities = 45/227 (19%), Positives = 86/227 (37%), Gaps = 19/227 (8%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLN 98
            + KL  L     + L    P       L  L+L    ++  +P         +E +   
Sbjct: 328 KMKKLGMLECLYNQ-LEGKLPAFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFA 385

Query: 99  GTAIEELPSSIEC--LSGLSALYLDH-------CKRLKSLPSSLCKLKSLNSIYLRWCSS 149
              ++ +P+  +   +S +SA+   +        K    L  +  K  +++SI L     
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ- 444

Query: 150 LKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRL--NNFDGLQNLTSLYLTDCGITELP 206
           +   P E       L+S+N  G  + E+P + ++    NF     LTS+ L    +T+L 
Sbjct: 445 ISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLS 504

Query: 207 ENL--GQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQS 251
           ++     L  L+ + L  N+F + P   ++ S L    +      Q 
Sbjct: 505 DDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQG 551

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 49/284 (17%), Positives = 89/284 (31%), Gaps = 51/284 (17%)

Query: 42  LDKLVNLNLNNCK--SLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG 99
            +K+  + +      +  +    + +++ L  L+         LP   S   +  + L  
Sbjct: 304 GEKIQIIYIGYNNLKTFPV-ETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAY 362

Query: 100 TAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSL--CKLKSLNSIYLR-------WCSS 149
             I E+P++       +  L   H K LK +P+      +  +++I             +
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKN 421

Query: 150 LKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN- 208
              L         ++S+N     I + P  +     F     L+S+ L    +TE+P+N 
Sbjct: 422 FDPLDPTPFKGINVSSINLSNNQISKFPKEL-----FSTGSPLSSINLMGNMLTEIPKNS 476

Query: 209 -------LGQLSLLLELYLEKNNFERLPESII--HLSKLAYLKLSYCERLQSLPKLPCNL 259
                       LL  + L  N   +L +      L  L  + LSY       P  P N 
Sbjct: 477 LKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNS 535

Query: 260 SELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREIL 303
           S L                     + F +RN      N      
Sbjct: 536 STL---------------------KGFGIRNQRDAQGNRTLREW 558

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 77.4 bits (191), Expect = 6e-16
 Identities = 28/222 (12%), Positives = 55/222 (24%), Gaps = 31/222 (13%)

Query: 44  KLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 103
           ++  L+L    +   +P  I +L  L+ L L                +            
Sbjct: 82  RVTGLSLEGFGASGRVPDAIGQLTELEVLAL--------------GSH----GEKVNERL 123

Query: 104 ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLN--SIYLRWCSSLKSLPNELGNLE 161
             P  I                 K+      +    +     +      KS+        
Sbjct: 124 FGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITL 183

Query: 162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-ELPENLGQLSLLLELYL 220
               +      I  V  +++R      L  L   Y+ +     E      +         
Sbjct: 184 KDTQIGQLSNNITFVSKAVMR------LTKLRQFYMGNSPFVAENICEAWENENSEYA-- 235

Query: 221 EKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSEL 262
               ++       +L  L  +++  C  L  LP     L E+
Sbjct: 236 --QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEM 275

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.1 bits (146), Expect = 4e-10
 Identities = 14/157 (8%), Positives = 45/157 (28%), Gaps = 8/157 (5%)

Query: 112 LSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLR----WCSSLKSLPNELGNLEALNSLN 167
              ++ L L+       +P ++ +L  L  + L       +     P  +    +     
Sbjct: 80  NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139

Query: 168 AEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC-GITELPENLGQLSLLLELYLEKNNFE 226
                 ++  +      +F    +L    +        + ++        ++    NN  
Sbjct: 140 KMRMHYQKTFVDYDPREDF---SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 227 RLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELD 263
            + ++++ L+KL    +     +             +
Sbjct: 197 FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE 233

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 22/125 (17%), Positives = 38/125 (30%), Gaps = 10/125 (8%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKEL------DLWGCSKL 80
            N  TK  +      L  LV ++L+        P        LK        D  G   L
Sbjct: 497 FNKLTKLSDDFRATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555

Query: 81  KTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSL 139
           +  P  I+   ++  + +    I ++   I     +S L +     +    S +C     
Sbjct: 556 REWPEGITLCPSLTQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEA 613

Query: 140 NSIYL 144
               L
Sbjct: 614 GMYML 618

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =   99 bits (249), Expect = 2e-23
 Identities = 47/293 (16%), Positives = 96/293 (32%), Gaps = 37/293 (12%)

Query: 41  HLDKLVNLNLNNCK---------SLRILPPGIFRLEFLKELDLWGCSKLKTLPE---ISS 88
            L +L +LN+   +             L         ++   +     L+  P    +  
Sbjct: 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQK 571

Query: 89  AGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCK-LKSLNSIYLRWC 147
              + ++      +  L +       L+ L LD+  +++ +P   C     +  +     
Sbjct: 572 MVKLGLLDCVHNKVRHLEA-FGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHN 629

Query: 148 SSLKSLPN--ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL 205
             LK +PN     ++  + S++     I     +I    +     N +++ L+   I + 
Sbjct: 630 K-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF 688

Query: 206 PEN-LGQLSLLLELYLEKNNFERLPE--------SIIHLSKLAYLKLSYCERLQSLP--- 253
           P       S +  + L  N    +PE        +  +   L  + L +  +L SL    
Sbjct: 689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFN-KLTSLSDDF 747

Query: 254 ---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREIL 303
               LP  LS +D  +     S P     S   + F +R+    + N I    
Sbjct: 748 RATTLP-YLSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQW 798

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 98.0 bits (244), Expect = 1e-22
 Identities = 51/303 (16%), Positives = 89/303 (29%), Gaps = 42/303 (13%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEI 86
           ++  T S        L   ++    +   +      +   + L   DL     +   PE+
Sbjct: 356 THSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL-QDAINRNPEM 414

Query: 87  SSAGNIEVMYLNGT-------AIEELPSSIECLSGLSALYLDHCK--------------- 124
                   + L  T        I  +  +I+ L+ L  +Y  +                 
Sbjct: 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANS 474

Query: 125 ----RLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSI 180
               + ++   S   LK L  + L  C ++  LP+ L +L  L SLN             
Sbjct: 475 DYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLK 534

Query: 181 VRLNN----FDGLQNLTSLYLTDCGITELPEN--LGQLSLLLELYLEKNNFERLPESIIH 234
                     D    +   Y+    + E P +  L ++  L  L    N    L      
Sbjct: 535 ADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEA-FGT 593

Query: 235 LSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSPGLVFPSRDP--QYFDL 288
             KL  LKL Y  +++ +P         +  L   H   L+  P +            D 
Sbjct: 594 NVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDF 651

Query: 289 RNN 291
             N
Sbjct: 652 SYN 654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.6 bits (230), Expect = 7e-21
 Identities = 36/266 (13%), Positives = 82/266 (30%), Gaps = 47/266 (17%)

Query: 41  HLDKLVNLNLNNCKSLRILPP--GIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLN 98
              K+    +     L   P    + ++  L  LD     K++ L    +   +  + L+
Sbjct: 546 TGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHN-KVRHLEAFGTNVKLTDLKLD 603

Query: 99  GTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPS--SLCKLKSLNSIYLRW--------- 146
              IEE+P         +  L   H K LK +P+  +   +  + S+   +         
Sbjct: 604 YNQIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 147 ---------CSSLKSL-----------PNELGNLEALNSLNAEGTAIREVPLSIVRL--N 184
                      +  ++                    ++++      +  +P + ++    
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 185 NFDGLQNLTSLYLTDCGITELPENL--GQLSLLLELYLEKNNFERLPESIIHLSKLAYLK 242
           N+     LT++ L    +T L ++     L  L  + +  N F   P   ++ S+L    
Sbjct: 723 NYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFG 782

Query: 243 LSYCERLQS------LPKLPCNLSEL 262
           + +    +        P        L
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSL 808

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 82.6 bits (204), Expect = 2e-17
 Identities = 38/266 (14%), Positives = 74/266 (27%), Gaps = 44/266 (16%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLN-- 98
           +  ++  L+L    +   +P  I +L  LK L   G         +     +        
Sbjct: 321 NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSF-GTHSETVSGRLFGDEELTPDMSEER 379

Query: 99  --------GTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSL 150
                        +    +     L      + +       S   LK          + +
Sbjct: 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQ--IGNLTNRI 437

Query: 151 KSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNN--------------FDGLQNLTSLY 196
             +   +  L  L  +    +      +++   +               +  L++LT + 
Sbjct: 438 TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 197 LTDC-GITELPENLGQLSLLLELYLEKNNFE----------RLPESIIHLSKLAYLKLSY 245
           L +C  +T+LP+ L  L  L  L +  N             RL +      K+    + Y
Sbjct: 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGY 557

Query: 246 CERLQSLPKLPC-----NLSELDAHH 266
              L+  P          L  LD  H
Sbjct: 558 N-NLEEFPASASLQKMVKLGLLDCVH 582

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 69.1 bits (169), Expect = 4e-13
 Identities = 27/220 (12%), Positives = 60/220 (27%), Gaps = 33/220 (15%)

Query: 27  SNFFTKSPNHSLT----LHLDKLVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLK 81
            N       +               + L+  + ++  P  +F     +  + L     + 
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNE-IQKFPTELFATGSPISTIILSNN-LMT 710

Query: 82  TLPE---------ISSAGNIEVMYLNGTAIEELPSSIEC--LSGLSALYLDHCKRLKSLP 130
           ++PE           +   +  + L    +  L        L  LS + + +     S P
Sbjct: 711 SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFP 769

Query: 131 SSLCKLKSLNSIYLR------WCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLN 184
           +       L +  +R          L+  P  +    +L  L      IR+V   +    
Sbjct: 770 TQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL---- 825

Query: 185 NFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNN 224
                  L  L + D     +        +   +Y+   +
Sbjct: 826 ----TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYD 861

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 66.4 bits (162), Expect = 3e-12
 Identities = 39/227 (17%), Positives = 77/227 (33%), Gaps = 6/227 (2%)

Query: 67  EFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKR 125
            F KELD+WG      L    + G +  + L G   +  +P +I  L+ L  L       
Sbjct: 303 NFNKELDMWGDQPGVDL---DNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSE 359

Query: 126 LKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLN 184
             S      +  + +    R            L   + LN  +    AI   P       
Sbjct: 360 TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKK 419

Query: 185 NFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLS 244
           +       T +      IT + + + +L+ L  +Y   + F     ++      +     
Sbjct: 420 DSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ 479

Query: 245 YCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN 291
           Y     S   L  +L++++ ++C  +   P  ++   + Q  ++  N
Sbjct: 480 YENEELSWSNLK-DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN 525

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 64.9 bits (158), Expect = 9e-12
 Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 9/220 (4%)

Query: 47  NLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEEL 105
           N N             +     +  L L G      +P  I     ++V+     +    
Sbjct: 303 NFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVS 362

Query: 106 PSSI--ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEAL 163
                 E L+   +    H  R+      L   + LN   L   +  ++   E+  ++  
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRN--PEMKPIKKD 420

Query: 164 NSLNAEGTAIREVPLSIVRL-NNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEK 222
           + ++ + T I  +   I  +      L  L  +Y  +   T     +       +     
Sbjct: 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYA--- 477

Query: 223 NNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSEL 262
             +E    S  +L  L  ++L  C  +  LP    +L EL
Sbjct: 478 KQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPEL 517

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 99.6 bits (248), Expect = 3e-23
 Identities = 60/263 (22%), Positives = 88/263 (33%), Gaps = 47/263 (17%)

Query: 42  LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA 101
            +    LN+     L  LP  +     +  L +   + L +LP       +  + ++G  
Sbjct: 39  NNGNAVLNVGESG-LTTLPDCLPAH--ITTLVIPDNN-LTSLPA--LPPELRTLEVSGNQ 92

Query: 102 IEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLE 161
           +  LP     L  LS         L +LPS LCKL           + L SLP     L+
Sbjct: 93  LTSLPVLPPGLLELSIFSNPLT-HLPALPSGLCKLWIFG-------NQLTSLPVLPPGLQ 144

Query: 162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLE 221
               L+     +  +P              L  L+  +  +T LP     L    EL + 
Sbjct: 145 ---ELSVSDNQLASLP---------ALPSELCKLWAYNNQLTSLPMLPSGLQ---ELSVS 189

Query: 222 KNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHC--TALESSPGLVFP 279
            N    LP     L KL         RL SLP LP  L EL       T+L   P     
Sbjct: 190 DNQLASLPTLPSELYKLWAYNN----RLTSLPALPSGLKELIVSGNRLTSLPVLPS---- 241

Query: 280 SRDPQYFDLRNNLKLDRNEIREI 302
                  +L+  L +  N +  +
Sbjct: 242 -------ELK-ELMVSGNRLTSL 256

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 89.6 bits (222), Expect = 6e-20
 Identities = 52/232 (22%), Positives = 81/232 (34%), Gaps = 31/232 (13%)

Query: 37  SLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY 96
           SL +    L  L++++ + L  LP     L  L   +     +L +LP       ++ + 
Sbjct: 135 SLPVLPPGLQELSVSDNQ-LASLPALPSELCKLWAYNN----QLTSLPM--LPSGLQELS 187

Query: 97  LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE 156
           ++   +  LP+    L  L A       RL SLP+    LK L     R    L SLP  
Sbjct: 188 VSDNQLASLPTLPSELYKLWAYNN----RLTSLPALPSGLKELIVSGNR----LTSLPVL 239

Query: 157 LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLL 216
              L+    L   G  +  +P+             L SL +    +T LPE+L  LS   
Sbjct: 240 PSELK---ELMVSGNRLTSLPMLP---------SGLLSLSVYRNQLTRLPESLIHLSSET 287

Query: 217 ELYLEKNNFERLPESIIHLSKLAYL----KLSYCERLQSLPKLPCNLSELDA 264
            + LE N         +     A       + +     S P+    L    A
Sbjct: 288 TVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAA 339

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 62.2 bits (151), Expect = 7e-11
 Identities = 33/158 (20%), Positives = 53/158 (33%), Gaps = 29/158 (18%)

Query: 134 CKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT 193
           C       + +   S L +LP+ L     + +L      +  +P              L 
Sbjct: 37  CLNNGNAVLNVG-ESGLTTLPDCLPA--HITTLVIPDNNLTSLP---------ALPPELR 84

Query: 194 SLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHL--------------SKLA 239
           +L ++   +T LP     L  L        +   LP  +  L                L 
Sbjct: 85  TLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPVLPPGLQ 144

Query: 240 YLKLSYCERLQSLPKLPCNLSELDAHHC--TALESSPG 275
            L +S   +L SLP LP  L +L A++   T+L   P 
Sbjct: 145 ELSVSDN-QLASLPALPSELCKLWAYNNQLTSLPMLPS 181

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 92.0 bits (229), Expect = 6e-21
 Identities = 63/295 (21%), Positives = 108/295 (36%), Gaps = 51/295 (17%)

Query: 42  LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA 101
              L  +   N + L  LP  +  L FL  +       LK LP+     ++E +      
Sbjct: 172 PPSLEFIAAGNNQ-LEELPE-LQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVAGNNI 226

Query: 102 IEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLE 161
           +EELP  ++ L  L+ +Y D+   LK+LP     L++LN         L  LP    +L 
Sbjct: 227 LEELPE-LQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNY----LTDLPELPQSLT 280

Query: 162 ALNSLNAEGTAIREVPLSIVRLNN--------FDGLQNLTSLYLTDCGITELPENLGQLS 213
            L+      + + E+P ++  LN          D   +L  L +++  + ELP    +L 
Sbjct: 281 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLE 340

Query: 214 LLLELYLEKNNFERLPESIIHLSKL---------------AYLKLSYCERLQSLPKLPCN 258
               L    N+   +PE   +L +L               +   L     L  +P+LP N
Sbjct: 341 ---RLIASFNHLAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQN 397

Query: 259 LSELDAHHC--TALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQ 311
           L +L             P  V             +L+++   + +  E A +   
Sbjct: 398 LKQLHVETNPLREFPDIPESV------------EDLRMNSERVVDPYEFAHETTD 440

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.7 bits (223), Expect = 3e-20
 Identities = 45/229 (19%), Positives = 79/229 (34%), Gaps = 29/229 (12%)

Query: 49  NLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS 108
            L +  +L  +P     ++   E         +  P                A+  L   
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP-------GNGEQREMAVSRLRDC 68

Query: 109 IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA 168
           +        L L++   L SLP     L+SL +     C+SL  LP    +L++L   N 
Sbjct: 69  L--DRQAHELELNNLG-LSSLPELPPHLESLVA----SCNSLTELPELPQSLKSLLVDNN 121

Query: 169 EGTAIREVPLSIVRLN----------NFDGLQNLTSLYLTDCGITELPENLGQLSLLLEL 218
              A+ ++P  +  L                  L  + + +  + +LP+    L     +
Sbjct: 122 NLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLE---FI 178

Query: 219 YLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHC 267
               N  E LPE + +L  L  +       L+ LP LP +L  + A + 
Sbjct: 179 AAGNNQLEELPE-LQNLPFLTAIYADNN-SLKKLPDLPLSLESIVAGNN 225

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 89.3 bits (222), Expect = 5e-20
 Identities = 65/245 (26%), Positives = 105/245 (42%), Gaps = 36/245 (14%)

Query: 37  SLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY 96
           +L+     L  L ++N + L  LP  +    FLK +D+     LK LP+     ++E + 
Sbjct: 125 ALSDLPPLLEYLGVSNNQ-LEKLPE-LQNSSFLKIIDVDNN-SLKKLPD--LPPSLEFIA 179

Query: 97  LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE 156
                +EELP  ++ L  L+A+Y D+   LK LP     L+S+ +        L+ LP E
Sbjct: 180 AGNNQLEELPE-LQNLPFLTAIYADNNS-LKKLPDLPLSLESIVAGNNI----LEELP-E 232

Query: 157 LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLL 216
           L NL  L ++ A+   ++ +P         D   +L +L + D  +T+LPE    L+ L 
Sbjct: 233 LQNLPFLTTIYADNNLLKTLP---------DLPPSLEALNVRDNYLTDLPELPQSLTFLD 283

Query: 217 ELYLEKNNFERLPESIIHL--------------SKLAYLKLSYCERLQSLPKLPCNLSEL 262
                 +    LP ++ +L                L  L +S   +L  LP LP  L  L
Sbjct: 284 VSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPALPPRLERL 342

Query: 263 DAHHC 267
            A   
Sbjct: 343 IASFN 347

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 48/251 (19%), Positives = 79/251 (31%), Gaps = 49/251 (19%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
           +L  L  +  +N   L+ LP     LE    +       L+ LPE+ +   +  +Y +  
Sbjct: 193 NLPFLTAIYADNNS-LKKLPDLPLSLE---SIVAGNN-ILEELPELQNLPFLTTIYADNN 247

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            ++ LP     L  L+         L  LP     L  L+            L     NL
Sbjct: 248 LLKTLPDLPPSLEALNVRDN----YLTDLPELPQSLTFLDVSEN----IFSGLSELPPNL 299

Query: 161 EALN-----------------SLNAEGTAIREVPLSIVRLNNFD-----------GLQNL 192
             LN                  LN     + E+P    RL                 QNL
Sbjct: 300 YYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNL 359

Query: 193 TSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSL 252
             L++    + E P+    +  L       ++   +PE       L  L +     L+  
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMN----SHLAEVPELP---QNLKQLHVETN-PLREF 411

Query: 253 PKLPCNLSELD 263
           P +P ++ +L 
Sbjct: 412 PDIPESVEDLR 422

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 47/254 (18%), Positives = 84/254 (33%), Gaps = 47/254 (18%)

Query: 36  HSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM 95
             L      L ++   N   L  LP  +  L FL  +       LKTLP+     ++E +
Sbjct: 208 KKLPDLPLSLESIVAGNNI-LEELP-ELQNLPFLTTIYADNN-LLKTLPD--LPPSLEAL 262

Query: 96  YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN 155
            +    + +LP   + L+ L             L      L  LN+        ++SL +
Sbjct: 263 NVRDNYLTDLPELPQSLTFLDVSEN----IFSGLSELPPNLYYLNASSNE----IRSLCD 314

Query: 156 ELGNLEALNSLNAEGTAIREVPLSIVRLNNFD-----------GLQNLTSLYLTDCGITE 204
              +LE    LN     + E+P    RL                 QNL  L++    + E
Sbjct: 315 LPPSLE---ELNVSNNKLIELPALPPRLERLIASFNHLAEVPELPQNLKQLHVEYNPLRE 371

Query: 205 LPENLGQLSLLL----------------ELYLEKNNFERLPESIIHLSKLAYLKLSYCER 248
            P+    +  L                 +L++E N     P+       +  L+++  ER
Sbjct: 372 FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP---ESVEDLRMN-SER 427

Query: 249 LQSLPKLPCNLSEL 262
           +    +     ++ 
Sbjct: 428 VVDPYEFAHETTDK 441

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 37/188 (19%), Positives = 73/188 (38%), Gaps = 28/188 (14%)

Query: 37  SLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY 96
            L+     L  LN ++ + +R L      LE   EL++    KL  LP  +    +E + 
Sbjct: 291 GLSELPPNLYYLNASSNE-IRSLCDLPPSLE---ELNVSNN-KLIELP--ALPPRLERLI 343

Query: 97  LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE 156
            +   + E+P        L  L++++   L+  P     ++ L        S L  +P  
Sbjct: 344 ASFNHLAEVPELP---QNLKQLHVEYN-PLREFPDIPESVEDLRM-----NSHLAEVPEL 394

Query: 157 LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLL 216
             NL+    L+ E   +RE P         D  +++  L +    + +  E   + +  L
Sbjct: 395 PQNLK---QLHVETNPLREFP---------DIPESVEDLRMNSERVVDPYEFAHETTDKL 442

Query: 217 ELYLEKNN 224
           E  + +++
Sbjct: 443 EDDVFEHH 450

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 32/291 (10%), Positives = 79/291 (27%), Gaps = 34/291 (11%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPE 85
            +   ++           +  L+L+    L  +          L+ L+L     L    +
Sbjct: 19  DSSLKQALASLRQ-SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLD 75

Query: 86  ISSAGNIEVMYLNGTAIEELPS-----------------SIECLSGLSALYLDHCKRLKS 128
           + S   +  + LN   ++EL                   S     G   +YL +  ++  
Sbjct: 76  LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITM 134

Query: 129 LPS-SLCKLKSLNSIYLRWCSSLKSLPNE--LGNLEALNSLNAEGTAIREVPLSIVRLNN 185
           L          +  + L+    + ++       + + L  LN +   I +V   +     
Sbjct: 135 LRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV----- 188

Query: 186 FDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245
                 L +L L+   +  +       + +  + L  N    + +++     L +  L  
Sbjct: 189 --VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRG 246

Query: 246 CE-RLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLD 295
                 +L         +       ++   G                   +
Sbjct: 247 NGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 78.9 bits (195), Expect = 7e-17
 Identities = 37/248 (14%), Positives = 85/248 (34%), Gaps = 32/248 (12%)

Query: 36  HSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLP--EISSAGNI 92
           H +  + ++     + +   L+     + +    +KELDL G   L  +   +++    +
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 93  EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLN-------SIYLR 145
           E++ L+   + E    +E LS L  L L++   ++ L      +++L+        +   
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELL-VGPSIETLHAANNNISRVSCS 117

Query: 146 WCSSLKSL-----------PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTS 194
                K++             + G    +  L+ +   I  V  + +          L  
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTLEH 173

Query: 195 LYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK 254
           L L    I ++   +   + L  L L  N    +       + + ++ L    +L  + K
Sbjct: 174 LNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231

Query: 255 LPCNLSEL 262
                  L
Sbjct: 232 ALRFSQNL 239

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 64.2 bits (157), Expect = 6e-12
 Identities = 28/233 (12%), Positives = 60/233 (25%), Gaps = 21/233 (9%)

Query: 42  LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNG 99
              +  L+  N   +  +     +    K + L    K+  L ++       ++ + L  
Sbjct: 98  GPSIETLHAANNN-ISRVSCSRGQG--KKNIYLANN-KITMLRDLDEGCRSRVQYLDLKL 153

Query: 100 TAIEELP--SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL 157
             I+ +           L  L L +   +  +   +     L ++ L     L  +  E 
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVV-FAKLKTLDLSSNK-LAFMGPEF 210

Query: 158 GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLE 217
            +   +  ++     +  +             QNL    L   G                
Sbjct: 211 QSAAGVTWISLRNNKLVLIE------KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRV 264

Query: 218 LYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPC----NLSELDAHH 266
             + K   ++L         +  L        + LP         L     HH
Sbjct: 265 QTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 24/152 (15%), Positives = 51/152 (33%), Gaps = 18/152 (11%)

Query: 152 SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LG 210
           ++     N           +++++   S+          N+  L L+   ++++    L 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL-----RQSAWNVKELDLSGNPLSQISAADLA 55

Query: 211 QLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTAL 270
             + L  L L  N      + +  LS L  L L+    +Q L   P ++  L A +   +
Sbjct: 56  PFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLVGP-SIETLHAAN-NNI 111

Query: 271 ESSPGLVFPSRDPQYFDLRNNLKLDRNEIREI 302
                             + N+ L  N+I  +
Sbjct: 112 SRVSCSRGQG-------KK-NIYLANNKITML 135

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 31/217 (14%)

Query: 105 LPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP-NELGNLEAL 163
           +    +  +      +      ++L S      ++  + L     L  +   +L     L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 164 NSLNAEGTAIREVP------------LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQ 211
             LN     + E              L+   +       ++ +L+  +  I+ +  + GQ
Sbjct: 61  ELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQ 120

Query: 212 LSLLLELYLEKNNFERLPE-SIIHLSKLAYLKLSYCERLQSLPKLPC-----NLSELDAH 265
                 +YL  N    L +      S++ YL L     + ++           L  L+  
Sbjct: 121 --GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQ 177

Query: 266 HCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREI 302
           +   +    G V  ++      L+  L L  N++  +
Sbjct: 178 YN-FIYDVKGQVVFAK------LK-TLDLSSNKLAFM 206

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 84.6 bits (209), Expect = 3e-18
 Identities = 41/246 (16%), Positives = 84/246 (34%), Gaps = 35/246 (14%)

Query: 38  LTLHLDKLVNLNLNNCKS---LRILPPGIFR-LEFLKELDLWGCS--KLKTLPEISSAGN 91
           +++ L    N +L+       +       F   +  ++  L G +  +  +L +      
Sbjct: 1   MSIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQ 60

Query: 92  IEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK 151
              + LN   +  LP ++     ++ L +     L SLP     L+ L++   R    L 
Sbjct: 61  FSELQLNRLNLSSLPDNL--PPQITVLEITQN-ALISLPELPASLEYLDACDNR----LS 113

Query: 152 SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFD-----------GLQNLTSLYLTDC 200
           +LP    +L+    L+ +   +  +P     L   +              +L  L + + 
Sbjct: 114 TLPELPASLK---HLDVDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNN 170

Query: 201 GITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKL----AYLKLSYCERLQSLPKLP 256
            +T LPE    L     L +  N  E LP   +          + +     R+  +P+  
Sbjct: 171 QLTFLPELPESLE---ALDVSTNLLESLPAVPVRNHHSEETEIFFRCREN-RITHIPENI 226

Query: 257 CNLSEL 262
            +L   
Sbjct: 227 LSLDPT 232

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 82.3 bits (203), Expect = 1e-17
 Identities = 45/275 (16%), Positives = 92/275 (33%), Gaps = 43/275 (15%)

Query: 42  LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTA 101
           +++   L LN    L  LP  +     +  L++     L +LPE     ++E +      
Sbjct: 58  INQFSELQLNRLN-LSSLPDNLPPQ--ITVLEITQN-ALISLPE--LPASLEYLDACDNR 111

Query: 102 IEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS--LKSLPNELGN 159
           +  LP      + L  L +D+  +L  LP     L+ +N        +  L  LP    +
Sbjct: 112 LSTLPELP---ASLKHLDVDNN-QLTMLPELPALLEYIN------ADNNQLTMLPELPTS 161

Query: 160 LEALN-----------------SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGI 202
           LE L+                 +L+     +  +P   VR ++    +        +  I
Sbjct: 162 LEVLSVRNNQLTFLPELPESLEALDVSTNLLESLPAVPVRNHHS--EETEIFFRCRENRI 219

Query: 203 TELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSEL 262
           T +PEN+  L     + LE N           LS+       +  R+        +  + 
Sbjct: 220 THIPENILSLDPTCTIILEDNPLSSRI--RESLSQQTAQPDYHGPRIY----FSMSDGQQ 273

Query: 263 DAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRN 297
           +  H    ++       ++      + +  + + +
Sbjct: 274 NTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEH 308

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.6 bits (144), Expect = 4e-10
 Identities = 27/141 (19%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 126 LKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNN 185
                S+  K +           ++  L   L  +   + L      +  +P ++     
Sbjct: 26  YADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSSLPDNL----- 78

Query: 186 FDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245
                 +T L +T   +  LPE    L     L    N    LPE     + L +L +  
Sbjct: 79  ---PPQITVLEITQNALISLPELPASLE---YLDACDNRLSTLPELP---ASLKHLDVDN 129

Query: 246 CERLQSLPKLPCNLSELDAHH 266
             +L  LP+LP  L  ++A +
Sbjct: 130 N-QLTMLPELPALLEYINADN 149

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 80.0 bits (198), Expect = 7e-17
 Identities = 42/229 (18%), Positives = 91/229 (39%), Gaps = 21/229 (9%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            LD++  L  +      I   G+  L  L +++     +L  +  + +   +  + +N  
Sbjct: 44  DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN-QLTDITPLKNLTKLVDILMNNN 100

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            I ++   +  L+ L+ L L + + +  +   L  L +LN + L    ++  +   L  L
Sbjct: 101 QIADIT-PLANLTNLTGLTLFNNQ-ITDID-PLKNLTNLNRLELSSN-TISDISA-LSGL 155

Query: 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYL 220
            +L  L+            +  L     L  L  L ++   ++++   L +L+ L  L  
Sbjct: 156 TSLQQLSFGN--------QVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIA 206

Query: 221 EKNNFERLPESIIHLSKLAYLKLSYC--ERLQSLPKLPCNLSELDAHHC 267
             N    +   +  L+ L  L L+    + + +L  L  NL++LD  + 
Sbjct: 207 TNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLT-NLTDLDLANN 253

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 41/223 (18%), Positives = 77/223 (34%), Gaps = 16/223 (7%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            L  L +L+L N + +  L P +  L  L EL L    ++  +  ++    +  + LN  
Sbjct: 241 SLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNEN 297

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            +E++   I  L  L+ L L     +  + S +  L  L  ++      +  +   L NL
Sbjct: 298 QLEDISP-ISNLKNLTYLTLYFNN-ISDI-SPVSSLTKLQRLFFYNNK-VSDVS-SLANL 352

Query: 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYL 220
             +N L+A    I ++            L  +T L L D   T  P N      +     
Sbjct: 353 TNINWLSAGHNQISDLT-------PLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVK 405

Query: 221 EKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELD 263
                   P +I          +++        ++    S+  
Sbjct: 406 NVTGALIAPATISDGGSYTEPDITW-NLPSYTNEVSYTFSQPV 447

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 2e-12
 Identities = 40/204 (19%), Positives = 74/204 (36%), Gaps = 19/204 (9%)

Query: 66  LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKR 125
           L    +  L G + +      +    +  +  +   I+ +   +E L+ L+ +   + + 
Sbjct: 23  LAEKMKTVL-GKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQ- 79

Query: 126 LKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNN 185
           L  +   L  L  L  I +     +  +   L NL  L  L      I ++         
Sbjct: 80  LTDIT-PLKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNNQITDID-------P 129

Query: 186 FDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245
              L NL  L L+   I+++   L  L+ L +L     N     + + +L+ L  L +S 
Sbjct: 130 LKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLSF--GNQVTDLKPLANLTTLERLDISS 186

Query: 246 C--ERLQSLPKLPCNLSELDAHHC 267
                +  L KL  NL  L A + 
Sbjct: 187 NKVSDISVLAKLT-NLESLIATNN 209

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 14/205 (6%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            L KL  L L   + +  + P +  L  L  L+L    +L+ +  IS+  N+  + L   
Sbjct: 263 GLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTLYFN 319

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            I ++ S +  L+ L  L+  + K +  + S L  L ++N +       +  L   L NL
Sbjct: 320 NISDI-SPVSSLTKLQRLFFYNNK-VSDVSS-LANLTNINWLSAGHNQ-ISDLT-PLANL 374

Query: 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYL 220
             +  L     A    P+      N+    ++ +      G    P  +       E  +
Sbjct: 375 TRITQLGLNDQAWTNAPV------NYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDI 428

Query: 221 EKNNFERLPESIIHLSKLAYLKLSY 245
             N      E     S+   +    
Sbjct: 429 TWNLPSYTNEVSYTFSQPVTIGKGT 453

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 24/155 (15%), Positives = 61/155 (39%), Gaps = 15/155 (9%)

Query: 115 LSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR 174
           L +  +     +  +  +   L       L   +   ++     +L+ + +L A+   I+
Sbjct: 3   LGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK 59

Query: 175 EVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIH 234
                   ++  + L NLT +  ++  +T++   L  L+ L+++ +  N    +   + +
Sbjct: 60  S-------IDGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADITP-LAN 110

Query: 235 LSKLAYLKLSYCERLQSLPKLPC--NLSELDAHHC 267
           L+ L  L L    ++  +  L    NL+ L+    
Sbjct: 111 LTNLTGLTLFNN-QITDIDPLKNLTNLNRLELSSN 144

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 19/156 (12%), Positives = 49/156 (31%), Gaps = 6/156 (3%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
           +L  L  L L       I    +  L  L+ L  +   K+  +  +++  NI  +     
Sbjct: 307 NLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHN 363

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            I +L   +  L+ ++ L L+      +  +    +   N++     +     P  + + 
Sbjct: 364 QISDLTP-LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKN--VTGALIAPATISDG 420

Query: 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLY 196
            +    +                +    +   T+ +
Sbjct: 421 GSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTF 456

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 54/279 (19%), Positives = 97/279 (34%), Gaps = 24/279 (8%)

Query: 3   HGNIQQLWDSVQHNGKLKQI-ISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPP 61
             ++ +L   +     LK++ +S   N F      S + +   L +L++        L  
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSA--NKFENLCQISAS-NFPSLTHLSIKGNTKRLELGT 343

Query: 62  GIFR-LEFLKELDLWGCSKLKTLPEISSA----GNIEVMYLNGTAIEELPS-SIECLSGL 115
           G    LE L+ELDL     ++T    +       +++ + L+      L + + +    L
Sbjct: 344 GCLENLENLRELDL-SHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402

Query: 116 SALYLDHCKRLKSL--PSSLCKLKSLNSIYLRWCSSLKSLPNE-LGNLEALNSLNAEGTA 172
             L L    RLK     S    L  L  + L     L     +    L AL  LN +G  
Sbjct: 403 ELLDLAFT-RLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSEQLFDGLPALQHLNLQGNH 460

Query: 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPES 231
             +  +     N+   L  L  L L+ C ++ + ++    L ++  + L  N        
Sbjct: 461 FPKGNIQK--TNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518

Query: 232 IIHLSKLAYLKLSY----CERLQSLPKLPCNLSELDAHH 266
            +   K  YL L+           LP L      ++   
Sbjct: 519 ALSHLKGIYLNLASNHISIILPSLLPILS-QQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 59/281 (20%), Positives = 91/281 (32%), Gaps = 24/281 (8%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE- 85
               +      L  +   L +L L +     I  P  F  E LK LD      +  L + 
Sbjct: 114 QTGISSIDFIPLH-NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKE 171

Query: 86  -ISSAGNIEVMYL--NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSL--CKLKSLN 140
            +SS      + L  NG  I  +       +   +L     + L  +   L    ++SL 
Sbjct: 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLW 231

Query: 141 SIYLRWCSSLKSLPNELGNLEALN--SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT 198
                        P     L  ++  S+N +      +  +      F     L  L LT
Sbjct: 232 LGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT-----FHCFSGLQELDLT 286

Query: 199 DCGITELPENLGQLSLLLELYLEKNNFERLPESII-HLSKLAYLKLSYCERLQSLP---- 253
              ++ELP  L  LS L +L L  N FE L +    +   L +L +    +   L     
Sbjct: 287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCL 346

Query: 254 -KLPCNLSELDAHHC--TALESSPGLVFPSRDPQYFDLRNN 291
             L  NL ELD  H      +     +      Q  +L  N
Sbjct: 347 ENLE-NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN 386

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 67.0 bits (164), Expect = 2e-12
 Identities = 49/266 (18%), Positives = 87/266 (32%), Gaps = 34/266 (12%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPE 85
            N      N + +  L  L  L+L  C+ +  +    F+    L  L L     L  + E
Sbjct: 42  FNVLPTIQNTTFS-RLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAE 98

Query: 86  ISSAG--NIEVMYLNGTAIEEL-PSSIECLSGLSALYLDH-------------CKRLKSL 129
            + +G   ++ ++   T I  +    +     L +LYL                ++LK L
Sbjct: 99  TALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVL 158

Query: 130 -----------PSSLCKLKSLNSIYLRWCS-SLKSLPNELGNLEALNSLNAEGTAIREVP 177
                         +  L+   ++ L      +  +     +     SLN  GT    V 
Sbjct: 159 DFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218

Query: 178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIH-LS 236
              ++ +    L   T   + D  I+           +  + L+K+ F  +  +  H  S
Sbjct: 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFS 278

Query: 237 KLAYLKLSYCERLQSLPKLPCNLSEL 262
            L  L L+    L  LP     LS L
Sbjct: 279 GLQELDLTAT-HLSELPSGLVGLSTL 303

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 26/170 (15%), Positives = 52/170 (30%), Gaps = 11/170 (6%)

Query: 96  YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN 155
                 + E+P ++   +    L            ++  +L +L  + L  C       +
Sbjct: 18  NCENLGLNEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED 75

Query: 156 ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSL 214
              +   L++L      +  +  +        G + L  L+    GI+ +    L     
Sbjct: 76  TFQSQHRLDTLVLTANPLIFMAETA-----LSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 215 LLELYLEKNNFERLPESII-HLSKLAYLKLSYCERLQSLPK-LPCNLSEL 262
           L  LYL  N+   +         KL  L       +  L K    +L + 
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQA 179

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.8 bits (135), Expect = 8e-09
 Identities = 41/212 (19%), Positives = 78/212 (36%), Gaps = 20/212 (9%)

Query: 26  ASNFFTKSPNHSLTLH-LDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTL 83
           + +    S   +L L  L  L +LNL+  +    L    F+    L+ LDL    +LK  
Sbjct: 358 SHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFT-RLKVK 415

Query: 84  PE---ISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCK---RLKSLPSSLCKL 136
                  +   ++V+ L+ + ++       + L  L  L L             +SL  L
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475

Query: 137 KSLNSIYLRWCSSLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSL 195
             L  + L +C  L S+      +L+ +N ++     +    +          L+ +  L
Sbjct: 476 GRLEILVLSFCD-LSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA-----LSHLKGIY-L 528

Query: 196 YLTDCGITELPEN-LGQLSLLLELYLEKNNFE 226
            L    I+ +  + L  LS    + L +N  +
Sbjct: 529 NLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 78.0 bits (193), Expect = 2e-16
 Identities = 41/224 (18%), Positives = 75/224 (33%), Gaps = 19/224 (8%)

Query: 45  LVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEE 104
              L        +I P     L       L     +  +       +I  + + G  +  
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKA-SVTDVVTQEELESITKLVVAGEKVAS 58

Query: 105 LPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALN 164
           +   IE L+ L  L L+   ++  +   L  L  L ++Y+     +  +   L NL  L 
Sbjct: 59  IQG-IEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTNK-ITDISA-LQNLTNLR 113

Query: 165 SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNN 224
            L      I ++            L  + SL L           L  ++ L  L + ++ 
Sbjct: 114 ELYLNEDNISDIS-------PLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK 166

Query: 225 FERLPESIIHLSKLAYLKLSYC--ERLQSLPKLPCNLSELDAHH 266
            + +   I +L+ L  L L+Y   E +  L  L  +L    A+ 
Sbjct: 167 VKDVTP-IANLTDLYSLSLNYNQIEDISPLASLT-SLHYFTAYV 208

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 76.0 bits (188), Expect = 8e-16
 Identities = 49/257 (19%), Positives = 96/257 (37%), Gaps = 42/257 (16%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
           +L  L  LNLN  + +  + P +  L  L  L +    K+  +  + +  N+  +YLN  
Sbjct: 64  YLTNLEYLNLNGNQ-ITDISP-LSNLVKLTNLYIGTN-KITDISALQNLTNLRELYLNED 120

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWC-----SSLKSLPN 155
            I ++   +  L+ + +L L       S  S L  +  LN + +        + + +L +
Sbjct: 121 NISDISP-LANLTKMYSLNLGAN-HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTD 178

Query: 156 ---------------ELGNLEALNSLNAEGTAIREVP----------LS-----IVRLNN 185
                           L +L +L+   A    I ++           L      I  L+ 
Sbjct: 179 LYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP 238

Query: 186 FDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245
              L  LT L +    I+++   +  L+ L  L +  N    +   + +LS+L  L L+ 
Sbjct: 239 LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNN 296

Query: 246 CERLQSLPKLPCNLSEL 262
            +      ++   L+ L
Sbjct: 297 NQLGNEDMEVIGGLTNL 313

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 58.3 bits (142), Expect = 7e-10
 Identities = 26/164 (15%), Positives = 58/164 (35%), Gaps = 13/164 (7%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            L  L        + +  + P +  +  L  L +    K+  L  +++   +  + +   
Sbjct: 197 SLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTN 253

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            I ++ + ++ L+ L  L +   + +  + S L  L  LNS++L            +G L
Sbjct: 254 QISDINA-VKDLTKLKMLNVGSNQ-ISDI-SVLNNLSQLNSLFLNNNQLGNEDMEVIGGL 310

Query: 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE 204
             L +L      I ++            L  + S    +  I +
Sbjct: 311 TNLTTLFLSQNHITDIR-------PLASLSKMDSADFANQVIKK 347

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 77.1 bits (190), Expect = 7e-16
 Identities = 59/281 (20%), Positives = 101/281 (35%), Gaps = 38/281 (13%)

Query: 54  KSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGTAIEELPSSI-E 110
           K    +P GI      + LDL    ++KTL +   A   ++E + LN   +  +      
Sbjct: 21  KRFVAVPEGIPT--ETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENIVSAVEPGAFN 77

Query: 111 CLSGLSALYLDHCKRLKSLPSSLCK-LKSLNSIYLRWCSSLKSLPNEL-GNLEALNSLNA 168
            L  L  L L    RLK +P  +   L +L  + +     +  L + +  +L  L SL  
Sbjct: 78  NLFNLRTLGLRSN-RLKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEV 135

Query: 169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFER 227
               +  +         F GL +L  L L  C +T +P   L  L  L+ L L   N   
Sbjct: 136 GDNDLVYISH-----RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINA 190

Query: 228 LPESI-IHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDP 283
           + +     L +L  L++S+   L ++        NL+ L   HC         V      
Sbjct: 191 IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL 250

Query: 284 QYFDLRNN------------------LKLDRNEIREILEDA 306
           ++ +L  N                  ++L   ++  +   A
Sbjct: 251 RFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 41/208 (19%), Positives = 66/208 (31%), Gaps = 33/208 (15%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            L+ L  L L  C  L  +P                   L  L             L   
Sbjct: 150 GLNSLEQLTLEKCN-LTSIPTEALS----------HLHGLIVL------------RLRHL 186

Query: 101 AIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE-LG 158
            I  +     + L  L  L + H   L ++  +     +L S+ +  C +L ++P   + 
Sbjct: 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVR 245

Query: 159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLE 217
           +L  L  LN     I  +  S+        L  L  + L    +  +       L+ L  
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSM-----LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRV 300

Query: 218 LYLEKNNFERLPESIIH-LSKLAYLKLS 244
           L +  N    L ES+ H +  L  L L 
Sbjct: 301 LNVSGNQLTTLEESVFHSVGNLETLILD 328

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 60.1 bits (146), Expect = 3e-10
 Identities = 50/262 (19%), Positives = 85/262 (32%), Gaps = 62/262 (23%)

Query: 96  YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLP 154
             +      +P  I   +    L L    R+K+L          L  + L     + ++ 
Sbjct: 17  LCHRKRFVAVPEGI--PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVE 72

Query: 155 NE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE------ 207
                NL  L +L      ++ +PL +     F GL NLT L +++  I  L +      
Sbjct: 73  PGAFNNLFNLRTLGLRSNRLKLIPLGV-----FTGLSNLTKLDISENKIVILLDYMFQDL 127

Query: 208 -NLGQLSL------------------LLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCE 247
            NL  L +                  L +L LEK N   +P E++ HL  L  L+L +  
Sbjct: 128 YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL- 186

Query: 248 RLQSLP-----KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN----------- 291
            + ++      +L   L  L+  H   L++         +     + +            
Sbjct: 187 NINAIRDYSFKRLY-RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR 245

Query: 292 -------LKLDRNEIREILEDA 306
                  L L  N I  I    
Sbjct: 246 HLVYLRFLNLSYNPISTIEGSM 267

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 33/198 (16%), Positives = 60/198 (30%), Gaps = 40/198 (20%)

Query: 26  ASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE 85
                    ++S    L +L  L +++   L  + P       L  L +  C  L  +P 
Sbjct: 184 RHLNINAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPY 241

Query: 86  --ISSAGNIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSI 142
             +     +  + L+   I  +  S+   L  L  + L   + L  +             
Sbjct: 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVE------------ 288

Query: 143 YLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT---- 198
                      P     L  L  LN  G  +  +  S+     F  + NL +L L     
Sbjct: 289 -----------PYAFRGLNYLRVLNVSGNQLTTLEESV-----FHSVGNLETLILDSNPL 332

Query: 199 --DCGITELPENLGQLSL 214
             DC +  +     +L+ 
Sbjct: 333 ACDCRLLWVFRRRWRLNF 350

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 8e-16
 Identities = 58/251 (23%), Positives = 105/251 (41%), Gaps = 27/251 (10%)

Query: 54  KSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGTAIEELPSSI-E 110
           K+LR +P GI      + L+L    +++ +   S     ++E++ L+   I  +      
Sbjct: 53  KNLREVPDGIST--NTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFN 109

Query: 111 CLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNEL-GNLEALNSLN- 167
            L+ L+ L L    RL ++P+ +   L  L  ++LR    ++S+P+     + +L  L+ 
Sbjct: 110 GLANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDL 167

Query: 168 AEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFER 227
            E   +  +         F+GL NL  L L  C + E+P  L  L  L EL L  N+   
Sbjct: 168 GELKRLSYISEGA-----FEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSA 221

Query: 228 LPESII-HLSKLAYLKLSYCERLQSLPK-----LPCNLSELDAHHCTALESSPGLVFPSR 281
           +       L  L  L +    ++Q + +     L  +L E++  H   L   P  +F   
Sbjct: 222 IRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQ-SLVEINLAHN-NLTLLPHDLFTPL 278

Query: 282 DP-QYFDLRNN 291
              +   L +N
Sbjct: 279 HHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 43/221 (19%), Positives = 81/221 (36%), Gaps = 40/221 (18%)

Query: 91  NIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCS 148
           N  ++ L+   I+ +  +  + L  L  L L     ++++   +   L +LN++ L    
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR 123

Query: 149 SLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC-GITELP 206
            L ++PN     L  L  L      I  +P        F+ + +L  L L +   ++ + 
Sbjct: 124 -LTTIPNGAFVYLSKLKELWLRNNPIESIPSYA-----FNRIPSLRRLDLGELKRLSYIS 177

Query: 207 EN-LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAH 265
           E     LS L  L L   N   +P ++  L KL  L LS    L ++             
Sbjct: 178 EGAFEGLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGN-HLSAIRP----------- 224

Query: 266 HCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDA 306
              + +    L               L + +++I+ I  +A
Sbjct: 225 --GSFQGLMHL-------------QKLWMIQSQIQVIERNA 250

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 57.5 bits (139), Expect = 2e-09
 Identities = 33/182 (18%), Positives = 68/182 (37%), Gaps = 38/182 (20%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG 99
            +  L  L+L   K L  +  G F  L  L+ L+L  C  L+ +P ++    ++ + L+G
Sbjct: 158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPNLTPLIKLDELDLSG 216

Query: 100 TAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELG 158
             +  +   S + L  L  L++    +++ +                         N   
Sbjct: 217 NHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIE-----------------------RNAFD 252

Query: 159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT------DCGITELPENLGQL 212
           NL++L  +N     +  +P  +     F  L +L  ++L       +C I  L   +  +
Sbjct: 253 NLQSLVEINLAHNNLTLLPHDL-----FTPLHHLERIHLHHNPWNCNCDILWLSWWIKDM 307

Query: 213 SL 214
           + 
Sbjct: 308 AP 309

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 1e-15
 Identities = 45/241 (18%), Positives = 84/241 (34%), Gaps = 23/241 (9%)

Query: 41  HLDKLVNLNLNNC---KSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 97
             DK+ +++L++         +   +  L  L+ L L       ++     + ++  + L
Sbjct: 48  RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDL 107

Query: 98  NGTAIE-ELPS--SIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSL 153
           +  ++   + +  S+   SGL  L +           S   KL SL  + L   S   + 
Sbjct: 108 SRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGAN 167

Query: 154 PNEL---GNLEALNSLNAEGTAIR-EVPLSIVRLNNFDGLQNLTSLYLTDCGIT-ELPEN 208
                       L  L   G  I  +V +S           NL  L ++    +  +P  
Sbjct: 168 VVGWVLSDGCGELKHLAISGNKISGDVDVS--------RCVNLEFLDVSSNNFSTGIPF- 218

Query: 209 LGQLSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPKLPC-NLSELDAHH 266
           LG  S L  L +  N        +I   ++L  L +S  + +  +P LP  +L  L    
Sbjct: 219 LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAE 278

Query: 267 C 267
            
Sbjct: 279 N 279

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.9 bits (177), Expect = 5e-14
 Identities = 53/253 (20%), Positives = 82/253 (32%), Gaps = 21/253 (8%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR---LEFLKELDLWGCSKLKTL 83
           SN        S  L L+ L  L+L+          G         LK L + G      +
Sbjct: 135 SNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV 194

Query: 84  PEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIY 143
             +S   N+E + ++          +   S L  L +   K       ++     L  + 
Sbjct: 195 D-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLN 253

Query: 144 LRWCSSLKSLPNELGNLEALNSLNAEGTAIR-EVPLSIVRLNNFDGLQNLTSLYLTDCGI 202
           +     +  +P     L++L  L+        E+P  +           LT L L+    
Sbjct: 254 ISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFL-----SGACDTLTGLDLSGNHF 306

Query: 203 T-ELPENLGQLSLLLELYLEKNNFE-RLPESII-HLSKLAYLKLSYCERLQ-----SLPK 254
              +P   G  SLL  L L  NNF   LP   +  +  L  L LS+          SL  
Sbjct: 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN-EFSGELPESLTN 365

Query: 255 LPCNLSELDAHHC 267
           L  +L  LD    
Sbjct: 366 LSASLLTLDLSSN 378

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 61/267 (22%), Positives = 96/267 (35%), Gaps = 55/267 (20%)

Query: 37  SLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEV 94
            L+   D L  L+L+       +PP       L+ L L   +    LP   +     ++V
Sbjct: 288 FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347

Query: 95  MYLNGTAIE-ELPSSI-ECLSGLSALYLDHCKRLKSLPSSLCK--LKSLNSIYLRW---- 146
           + L+      ELP S+    + L  L L        +  +LC+    +L  +YL+     
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407

Query: 147 ---------CSSLKSL-----------PNELGNLEALNSLNAEGTAIREVPLSIVRLNNF 186
                    CS L SL           P+ LG+L  L  L              + LN  
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK-------------LWLNML 454

Query: 187 DG--------LQNLTSLYLTDCGIT-ELPENLGQLSLLLELYLEKNNFE-RLPESIIHLS 236
           +G        ++ L +L L    +T E+P  L   + L  + L  N     +P+ I  L 
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLE 514

Query: 237 KLAYLKLSYCERLQ-SLPKLPCNLSEL 262
            LA LKLS       ++P    +   L
Sbjct: 515 NLAILKLSNN-SFSGNIPAELGDCRSL 540

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 57.6 bits (140), Expect = 2e-09
 Identities = 42/253 (16%), Positives = 82/253 (32%), Gaps = 56/253 (22%)

Query: 49  NLNNCKSLRIL-----------PPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMY 96
           +L +   LR L           P  +  ++ L+ L L        +P  +S+  N+  + 
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496

Query: 97  LNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYL----------R 145
           L+   +  E+P  I  L  L+ L L +     ++P+ L   +SL  + L           
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556

Query: 146 WCSSLKSL----------PNELGNLEALNSLNAEGTAIR---EVPLSIVRL--------- 183
                                + N       +  G  +         + RL         
Sbjct: 557 AMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNIT 616

Query: 184 -NNFDG--------LQNLTSLYLTDCGIT-ELPENLGQLSLLLELYLEKNNFE-RLPESI 232
              + G          ++  L ++   ++  +P+ +G +  L  L L  N+    +P+ +
Sbjct: 617 SRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEV 676

Query: 233 IHLSKLAYLKLSY 245
             L  L  L LS 
Sbjct: 677 GDLRGLNILDLSS 689

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 53.0 bits (128), Expect = 6e-08
 Identities = 33/212 (15%), Positives = 62/212 (29%), Gaps = 46/212 (21%)

Query: 49  NLNNCKSLRIL-----------PPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL 97
            L +C+SL  L           P  +F+       +     +   +              
Sbjct: 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGN 592

Query: 98  NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK---SLP 154
                      +  LS  +   +           +     S+  + +   S       +P
Sbjct: 593 LLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM---SYNMLSGYIP 649

Query: 155 NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSL 214
            E+G++  L  LN          L     N+  G                +P+ +G L  
Sbjct: 650 KEIGSMPYLFILN----------LGH---NDISG---------------SIPDEVGDLRG 681

Query: 215 LLELYLEKNNFE-RLPESIIHLSKLAYLKLSY 245
           L  L L  N  + R+P+++  L+ L  + LS 
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSN 713

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 76.3 bits (188), Expect = 1e-15
 Identities = 59/259 (22%), Positives = 99/259 (38%), Gaps = 47/259 (18%)

Query: 45  LVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGTA 101
              LNL     ++++    FR L  L+ L L     ++ +   +  G  ++  + L    
Sbjct: 77  TRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW 134

Query: 102 IEELPSSI-ECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNELGN 159
           +  +PS   E LS L  L+L +   ++S+PS +  ++ SL  + L     L+ +      
Sbjct: 135 LTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA-- 191

Query: 160 LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELY 219
                                     F+GL NL  L L  C I ++P  L  L  L EL 
Sbjct: 192 --------------------------FEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELE 224

Query: 220 LEKNNFERLPE-SIIHLSKLAYLKLSYCERLQSLPK-----LPCNLSELDAHHCTALESS 273
           +  N+F  +   S   LS L  L +    ++  + +     L  +L EL+  H   L S 
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLA-SLVELNLAHN-NLSSL 281

Query: 274 PGLVFPSRDP-QYFDLRNN 291
           P  +F          L +N
Sbjct: 282 PHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 62.8 bits (153), Expect = 4e-11
 Identities = 40/222 (18%), Positives = 71/222 (31%), Gaps = 42/222 (18%)

Query: 91  NIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCS 148
           N   + L    I+ + +     L  L  L L     ++ +   +   L SLN++ L    
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNGLASLNTLELFDNW 134

Query: 149 SLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG-ITELP 206
            L  +P+     L  L  L      I  +P        F+ + +L  L L +   +  + 
Sbjct: 135 -LTVIPSGAFEYLSKLRELWLRNNPIESIPSYA-----FNRVPSLMRLDLGELKKLEYIS 188

Query: 207 EN-LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK-LPCNLSELDA 264
           E     L  L  L L   N + +P ++  L  L  L++S       +       LS L  
Sbjct: 189 EGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGN-HFPEIRPGSFHGLSSL-- 244

Query: 265 HHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDA 306
                                      L +  +++  I  +A
Sbjct: 245 -------------------------KKLWVMNSQVSLIERNA 261

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 38/177 (21%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG 99
            +  L+ L+L   K L  +  G F  L  LK L+L  C  +K +P ++    +E + ++G
Sbjct: 169 RVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPNLTPLVGLEELEMSG 227

Query: 100 TAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELG 158
               E+   S   LS L  L++ +  ++  +                         N   
Sbjct: 228 NHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIE-----------------------RNAFD 263

Query: 159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT------DCGITELPENL 209
            L +L  LN     +  +P  +     F  L+ L  L+L       DC I  L   L
Sbjct: 264 GLASLVELNLAHNNLSSLPHDL-----FTPLRYLVELHLHHNPWNCDCDILWLAWWL 315

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 76.0 bits (187), Expect = 1e-15
 Identities = 35/263 (13%), Positives = 78/263 (29%), Gaps = 21/263 (7%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
              KL  LNL++   L      +  L  L+ LDL        + E+    +IE ++    
Sbjct: 56  PFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY----VQELLVGPSIETLHAANN 109

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNE--L 157
            I  +  S     G   +YL +  ++  L          +  + L+  + + ++      
Sbjct: 110 NISRVSCSR--GQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELA 165

Query: 158 GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLE 217
            + + L  LN +   I +V   +           L +L L+   +  +       + +  
Sbjct: 166 ASSDTLEHLNLQYNFIYDVKGQV-------VFAKLKTLDLSSNKLAFMGPEFQSAAGVTW 218

Query: 218 LYLEKNNFERLPESIIHLSKLAYLKLSYCE-RLQSLPKLPCNLSELDAHHCTALESSPGL 276
           + L  N    + +++     L +  L        +L         +       ++   G 
Sbjct: 219 ISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 277 VFPSRDPQYFDLRNNLKLDRNEI 299
                             +    
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPA 301

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 74.5 bits (183), Expect = 6e-15
 Identities = 37/248 (14%), Positives = 84/248 (33%), Gaps = 32/248 (12%)

Query: 36  HSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLP--EISSAGNI 92
           H +  + ++     + +   L+     + +    +KELDL G   L  +   +++    +
Sbjct: 3   HEIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKL 60

Query: 93  EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLN-------SIYLR 145
           E++ L+   + E    +E LS L  L L++   ++ L      +++L+        +   
Sbjct: 61  ELLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELL-VGPSIETLHAANNNISRVSCS 117

Query: 146 WCSSLKSL-----------PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTS 194
                K++             + G    +  L+ +   I  V  +            L  
Sbjct: 118 RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFA----ELAASSDTLEH 173

Query: 195 LYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK 254
           L L    I ++   +   + L  L L  N    +       + + ++ L    +L  + K
Sbjct: 174 LNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVLIEK 231

Query: 255 LPCNLSEL 262
                  L
Sbjct: 232 ALRFSQNL 239

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 60.2 bits (146), Expect = 2e-10
 Identities = 26/286 (9%), Positives = 88/286 (30%), Gaps = 34/286 (11%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIF--RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLN 98
              ++  L+L   + +  +         + L+ L+L     +  +        ++ + L+
Sbjct: 142 CRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLDLS 199

Query: 99  GTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCS-SLKSLPNEL 157
              +  +    +  +G++ + L + K L  +  +L   ++L    LR       +L +  
Sbjct: 200 SNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFF 258

Query: 158 GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLE 217
              + + ++  +        +  +   N +     T  +       +LP        L+ 
Sbjct: 259 SKNQRVQTVAKQT-------VKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF--ADRLIA 309

Query: 218 LYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLV 277
           L  +++       S     +      +   R + +  L      +        ++     
Sbjct: 310 LKRKEHALLSGQGSETERLECERENQA---RQREIDALKEQYRTVIDQVTLRKQA----- 361

Query: 278 FPSRDPQYFDLRNNLKLDRNEIREILEDAQQEIQVMAIARWKQLQE 323
                      +  L+  +  + E + + ++    +     + + +
Sbjct: 362 -----------KITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.5 bits (126), Expect = 8e-08
 Identities = 24/156 (15%), Positives = 52/156 (33%), Gaps = 18/156 (11%)

Query: 152 SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LG 210
           ++     N           +++++   S+          N+  L L+   ++++    L 
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASL-----RQSAWNVKELDLSGNPLSQISAADLA 55

Query: 211 QLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTAL 270
             + L  L L  N      + +  LS L  L L+    +Q L   P ++  L A +   +
Sbjct: 56  PFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNN-YVQELLVGP-SIETLHAAN-NNI 111

Query: 271 ESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDA 306
                             + N+ L  N+I  + +  
Sbjct: 112 SRVSCSRGQG-------KK-NIYLANNKITMLRDLD 139

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 49.5 bits (118), Expect = 7e-07
 Identities = 32/218 (14%), Positives = 63/218 (28%), Gaps = 15/218 (6%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
               +  ++L N K L ++   +   + L+  DL G            + N  V  +   
Sbjct: 212 SAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270

Query: 101 AIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCS----SLKSLPN 155
            +++L   + E  +  +  +               +L +L        S      + L  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 156 ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN----LGQ 211
           E  N      ++A     R V   +         Q   +L      + E   N      +
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQV-----TLRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 212 LSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERL 249
           L   L+  + +   +   E    L  L  +   Y E  
Sbjct: 386 LDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMY 423

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 74.8 bits (184), Expect = 3e-15
 Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 16/216 (7%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPEISSAGNI----EVM 95
            L  L +L+L+    L  L    F+ L  L  L+L G    KTL E S   ++     + 
Sbjct: 98  SLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTKLQILR 155

Query: 96  YLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSL 153
             N     ++       L+ L  L +D    L+S    SL  +++++ + L        L
Sbjct: 156 VGNMDTFTKIQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQNVSHLILHMKQ-HILL 213

Query: 154 P----NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL 209
                +   ++E L   + +        LS    N+        ++ +TD  + ++ + L
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLL 273

Query: 210 GQLSLLLELYLEKNNFERLPESIIH-LSKLAYLKLS 244
            Q+S LLEL   +N  + +P+ I   L+ L  + L 
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.3 bits (118), Expect = 6e-07
 Identities = 27/138 (19%), Positives = 47/138 (34%), Gaps = 17/138 (12%)

Query: 178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNFERLPESI-IHL 235
           ++ +  ++     NL +L LT  GI  + E+    L  L  L L  N    L  S    L
Sbjct: 64  ITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPL 123

Query: 236 SKLAYLKLSYCERLQSLPKLPC-----NLSELDAHHCTALESSPGLVFPSRDPQYFDLRN 290
           S L +L L      ++L +         L  L   +           F         L  
Sbjct: 124 SSLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG-------LTF 175

Query: 291 --NLKLDRNEIREILEDA 306
              L++D ++++     +
Sbjct: 176 LEELEIDASDLQSYEPKS 193

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 74.7 bits (184), Expect = 4e-15
 Identities = 42/245 (17%), Positives = 84/245 (34%), Gaps = 30/245 (12%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPE 85
            N     P H    ++  L  L L     L  LP GIF     L  L +     L+ + +
Sbjct: 102 FNAIRYLPPHVFQ-NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIED 158

Query: 86  --ISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP--SSLCKLK---- 137
               +  +++ + L+   +  +  S+  +  L    + +   L +L    ++ +L     
Sbjct: 159 DTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYN-LLSTLAIPIAVEELDASHN 215

Query: 138 SLNSIYLRWCSSLKSL---------PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDG 188
           S+N +       L  L            L N   L  ++     + ++         F  
Sbjct: 216 SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP-----FVK 270

Query: 189 LQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCER 248
           +Q L  LY+++  +  L      +  L  L L  N+   +  +     +L  L L +   
Sbjct: 271 MQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-S 329

Query: 249 LQSLP 253
           + +L 
Sbjct: 330 IVTLK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.1 bits (172), Expect = 1e-13
 Identities = 43/247 (17%), Positives = 98/247 (39%), Gaps = 34/247 (13%)

Query: 80  LKTLPEISSAGNIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPS-SLCKLK 137
           +    E  +  N +++    + + +LP+++ +    +  L L+  + ++ + + +     
Sbjct: 35  VYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAH 93

Query: 138 SLNSIYLRWCSSLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLY 196
           ++  +Y+ + + ++ LP     N+  L  L  E   +  +P  I     F     LT+L 
Sbjct: 94  TIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGI-----FHNTPKLTTLS 147

Query: 197 LTDCGITELPENLGQ-LSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKL 255
           +++  +  + ++  Q  + L  L L  N    +  S+  +  L +  +SY   L +L   
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL--IPSLFHANVSYN-LLSTLAIP 204

Query: 256 PCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN----------------LKLDRNEI 299
              + ELDA H  ++    G V          L++N                + L  NE+
Sbjct: 205 I-AVEELDASHN-SINVVRGPVNVEL--TILKLQHNNLTDTAWLLNYPGLVEVDLSYNEL 260

Query: 300 REILEDA 306
            +I+   
Sbjct: 261 EKIMYHP 267

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 57.7 bits (140), Expect = 1e-09
 Identities = 32/204 (15%), Positives = 66/204 (32%), Gaps = 32/204 (15%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFR-----------------LEFLKELDLWGCSKLKTL 83
               L NL L++ + L  +   +                      ++ELD      +  +
Sbjct: 163 ATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVV 220

Query: 84  PEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSI 142
               +   + ++ L    + +    +    GL  + L +   L+ +      K++ L  +
Sbjct: 221 RGPVNV-ELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERL 277

Query: 143 YLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGI 202
           Y+   + L +L      +  L  L+     +  V        N      L +LYL    I
Sbjct: 278 YISN-NRLVALNLYGQPIPTLKVLDLSHNHLLHVE------RNQPQFDRLENLYLDHNSI 330

Query: 203 TELPENLGQLSLLLELYLEKNNFE 226
             L  +      L  L L  N+++
Sbjct: 331 VTLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 55.1 bits (133), Expect = 1e-08
 Identities = 41/228 (17%), Positives = 76/228 (33%), Gaps = 32/228 (14%)

Query: 105 LPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE-LGNLEAL 163
           + S+++       +++D   +          L +   +  +  + ++ LP   L +   +
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQV 71

Query: 164 NSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQ-LSLLLELYLEK 222
             LN     I E+         F     +  LY+    I  LP ++ Q + LL  L LE+
Sbjct: 72  ELLNLNDLQIEEIDTYA-----FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126

Query: 223 NNFERLPESI-IHLSKLAYLKLSYCERLQSLPK-----LPCNLSELDAHHCTALESSPGL 276
           N+   LP  I  +  KL  L +S    L+ +          +L  L       L      
Sbjct: 127 NDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATT-SLQNLQLSSN-RLTHVDLS 183

Query: 277 VFPSRDPQYFDLRNN-------------LKLDRNEIREILEDAQQEIQ 311
           + PS    + ++  N             L    N I  +      E+ 
Sbjct: 184 LIPSL--FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 229

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 40/228 (17%), Positives = 79/228 (34%), Gaps = 18/228 (7%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCK-SLRILPPGIFR-LEFLKELDLWGCSKLKTLP 84
           SN     P+      L +L  L+L++   S +            LK LDL     + T+ 
Sbjct: 37  SNKLQSLPHGVFD-KLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMS 94

Query: 85  E-ISSAGNIEVMYLNGTAIEELPSS--IECLSGLSALYLDHCKRLKSLPSSLCK-LKSLN 140
                   +E +    + ++++        L  L  L + H    +   + +   L SL 
Sbjct: 95  SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLE 153

Query: 141 SIYLRWCSSLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTD 199
            + +   S  ++   +    L  L  L+     + ++  +      F+ L +L  L ++ 
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA-----FNSLSSLQVLNMSH 208

Query: 200 CGITELPEN-LGQLSLLLELYLEKNNFERLPESIIH--LSKLAYLKLS 244
                L       L+ L  L    N+     +  +    S LA+L L+
Sbjct: 209 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 2e-11
 Identities = 40/193 (20%), Positives = 71/193 (36%), Gaps = 25/193 (12%)

Query: 124 KRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP-NELGNLEALNSLNAEGTAIREVPLSIVR 182
           K L S+P+ +    S   + L     L+SLP      L  L  L+     +         
Sbjct: 17  KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC--- 70

Query: 183 LNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESII--HLSKLAY 240
             +  G  +L  L L+  G+  +  N   L  L  L  + +N +++ E  +   L  L Y
Sbjct: 71  SQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 130

Query: 241 LKLSYCERLQSLPK-----LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRN--NLK 293
           L +S+    +         L  +L  L     +  E+    +F        +LRN   L 
Sbjct: 131 LDISHT-HTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDIFT-------ELRNLTFLD 181

Query: 294 LDRNEIREILEDA 306
           L + ++ ++   A
Sbjct: 182 LSQCQLEQLSPTA 194

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 74.5 bits (183), Expect = 7e-15
 Identities = 51/250 (20%), Positives = 96/250 (38%), Gaps = 20/250 (8%)

Query: 3   HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPG 62
           +  I ++ D   +     Q+++ + N   +  + +    L K+  ++L     + I+   
Sbjct: 299 YNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY-GLPKVAYIDLQKNH-IAIIQDQ 356

Query: 63  IFR-LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLD 121
            F+ LE L+ LDL   +    L  I    +I  ++L+G  +  LP        L+A  + 
Sbjct: 357 TFKFLEKLQTLDLRDNA----LTTIHFIPSIPDIFLSGNKLVTLPKI-----NLTANLIH 407

Query: 122 -HCKRLKSLP--SSLCKLKSLNSIYLRWCSSLKSLPNE--LGNLEALNSLNAEGTAIREV 176
               RL++L     L ++  L  + L       S   +       +L  L      ++  
Sbjct: 408 LSENRLENLDILYFLLRVPHLQILILNQNR-FSSCSGDQTPSENPSLEQLFLGENMLQLA 466

Query: 177 PLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPESIIHL 235
             + +  + F+GL +L  LYL    +  LP      L+ L  L L  N    L  +    
Sbjct: 467 WETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHN-DLP 525

Query: 236 SKLAYLKLSY 245
           + L  L +S 
Sbjct: 526 ANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.1 bits (138), Expect = 3e-09
 Identities = 42/269 (15%), Positives = 85/269 (31%), Gaps = 30/269 (11%)

Query: 27  SNFFTKSPNHSLTL-HLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLP 84
               + +        +L  L  L+L+  +   +     F  L  LK +D     ++  + 
Sbjct: 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN-QIFLVC 164

Query: 85  EIS----SAGNIEVMYLNGTAIEELPSSIECLSG-------LSALYLDHCK----RLKSL 129
           E          +    L   ++    S              L  L +           + 
Sbjct: 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNF 224

Query: 130 PSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLS---IVRLNN- 185
            +++ K ++ + I            + + + +         +++R + LS   +  LN+ 
Sbjct: 225 SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284

Query: 186 -FDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLK 242
            F+ L++L  L L    I ++ +     L  L  L L  N    L   +   L K+AY+ 
Sbjct: 285 VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344

Query: 243 LSYCERLQSLP----KLPCNLSELDAHHC 267
           L     +  +     K    L  LD    
Sbjct: 345 LQKN-HIAIIQDQTFKFLEKLQTLDLRDN 372

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.6 bits (134), Expect = 1e-08
 Identities = 56/304 (18%), Positives = 97/304 (31%), Gaps = 54/304 (17%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMYL 97
            L+    L L+    +R +    F  LE L+ L+L       T+ + +     N+ ++ L
Sbjct: 22  VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL 80

Query: 98  NGTAIEELPSSI-ECLSGLSALYLDHCKRLKSL---PSSLCKLKSLNSIYLRWCSSLKSL 153
             + I  L     + L  L  L L  C  L            LK+L  + L     ++SL
Sbjct: 81  GSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSL 138

Query: 154 P--NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQ--NLTSLYLTDCGITELPE-- 207
                 G L +L S++     I  V       +  + LQ   L+   L    +       
Sbjct: 139 YLHPSFGKLNSLKSIDFSSNQIFLVC-----EHELEPLQGKTLSFFSLAANSLYSRVSVD 193

Query: 208 -----NLGQLSLLLELYLEKNNFERLPESIIH--LSKLAYLKLSYCERLQSLPKLPCNLS 260
                N  +  +L  L +  N +           +SK     L     +        N+ 
Sbjct: 194 WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK 253

Query: 261 ELDAHHCTALESSPGLVFPSRDPQYFDLRNN------------------LKLDRNEIREI 302
           + D +    L  S          ++ DL +                   L L  N+I +I
Sbjct: 254 DPDQNTFAGLARSSV--------RHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI 305

Query: 303 LEDA 306
            ++A
Sbjct: 306 ADEA 309

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.8 bits (106), Expect = 3e-05
 Identities = 32/148 (21%), Positives = 47/148 (31%), Gaps = 19/148 (12%)

Query: 126 LKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLN 184
           L  +P  L   + L    L +   ++++       LE L  L              +   
Sbjct: 16  LTQVPQVLNTTERLL---LSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLT----IDKE 67

Query: 185 NFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERL---PESIIHLSKLAY 240
            F  L NL  L L    I  L  +    L  L EL L                +L  L  
Sbjct: 68  AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 241 LKLSYCERLQSLPKLPC-----NLSELD 263
           L LS   +++SL   P      +L  +D
Sbjct: 128 LDLSKN-QIRSLYLHPSFGKLNSLKSID 154

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 36/213 (16%), Positives = 75/213 (35%), Gaps = 17/213 (7%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPEISSAG--NIEVMYL 97
               L  + ++    L ++   +F  L  L E+ +   + L  +   +     N++ + +
Sbjct: 52  GFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI 111

Query: 98  NGTAIEELPSSIEC-LSGLSALYLDHCKRLKSLPS-SLCKLKS-LNSIYLRWCSSLKSLP 154
           + T I+ LP   +        L +     + ++   S   L      ++L     ++ + 
Sbjct: 112 SNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIH 170

Query: 155 NELGNLEALNSLNAEGTAIREV-PLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQL 212
           N      A N    +   + +   L  +  + F G      L ++   I  LP   L  L
Sbjct: 171 N-----SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENL 225

Query: 213 SLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245
             L        N ++LP ++  L  L    L+Y
Sbjct: 226 KKLRARST--YNLKKLP-TLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.2 bits (164), Expect = 9e-13
 Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 11/169 (6%)

Query: 91  NIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSS-LCKLKSLNSIYLRWCS 148
           N   +    T +  +          L  + +     L+ + +     L  L+ I +   +
Sbjct: 31  NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90

Query: 149 SLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTD-CGITELP 206
           +L  +  E   NL  L  L    T I+ +P                 L + D   I  + 
Sbjct: 91  NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-----KIHSLQKVLLDIQDNINIHTIE 145

Query: 207 ENL--GQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLP 253
            N   G     + L+L KN  + +  S  + ++L  L LS    L+ LP
Sbjct: 146 RNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELP 194

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 73.2 bits (179), Expect = 2e-14
 Identities = 49/204 (24%), Positives = 87/204 (42%), Gaps = 17/204 (8%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            L+ +  +  NN     +   GI  L  + +L L G  KL  +  +++  N+  ++L+  
Sbjct: 41  ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDEN 97

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            I++L SS++ L  L +L L+H   +  + + L  L  L S+YL     +  +   L  L
Sbjct: 98  KIKDL-SSLKDLKKLKSLSLEHN-GISDI-NGLVHLPQLESLYLGNNK-ITDITV-LSRL 152

Query: 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYL 220
             L++L+ E   I ++           GL  L +LYL+   I++L   L  L  L  L L
Sbjct: 153 TKLDTLSLEDNQISDIV-------PLAGLTKLQNLYLSKNHISDL-RALAGLKNLDVLEL 204

Query: 221 EKNNF-ERLPESIIHLSKLAYLKL 243
                  +      +L     +K 
Sbjct: 205 FSQECLNKPINHQSNLVVPNTVKN 228

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 70.1 bits (171), Expect = 1e-13
 Identities = 39/200 (19%), Positives = 75/200 (37%), Gaps = 18/200 (9%)

Query: 69  LKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKS 128
           + E      + +K +    +        L   ++ +   +   L+ +  +  ++   +KS
Sbjct: 1   MGETITVS-TPIKQIFPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSD-IKS 57

Query: 129 LPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDG 188
           +   +  L ++  ++L     L  +   L NL+ L  L  +   I++       L++   
Sbjct: 58  V-QGIQYLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENKIKD-------LSSLKD 107

Query: 189 LQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYC-- 246
           L+ L SL L   GI+++   L  L  L  LYL  N    +   +  L+KL  L L     
Sbjct: 108 LKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI 165

Query: 247 ERLQSLPKLPCNLSELDAHH 266
             +  L  L   L  L    
Sbjct: 166 SDIVPLAGLT-KLQNLYLSK 184

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 3e-12
 Identities = 41/207 (19%), Positives = 75/207 (36%), Gaps = 17/207 (8%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
           +L  +  L LN  K   I    +  L+ L  L L    K+K L  +     ++ + L   
Sbjct: 63  YLPNVTKLFLNGNKLTDI--KPLTNLKNLGWLFLDEN-KIKDLSSLKDLKKLKSLSLEHN 119

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            I ++ + +  L  L +LYL + K +  + + L +L  L+++ L     +  +   L  L
Sbjct: 120 GISDI-NGLVHLPQLESLYLGNNK-ITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-LAGL 174

Query: 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-ELPENLGQLSLLLELY 219
             L +L      I +       L    GL+NL  L L       +   +   L +   + 
Sbjct: 175 TKLQNLYLSKNHISD-------LRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVK 227

Query: 220 LEKNNFERLPESIIHLSKLAYLKLSYC 246
               +    PE I          + + 
Sbjct: 228 NTDGSLVT-PEIISDDGDYEKPNVKWH 253

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.8 bits (113), Expect = 3e-06
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 23/130 (17%)

Query: 180 IVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLA 239
           I ++   D         L    +T+      +L+ + ++    ++ + + + I +L  + 
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTDA-VTQNELNSIDQIIANNSDIKSV-QGIQYLPNVT 68

Query: 240 YLKLSYC--ERLQSLPKLPCNLSELDAHHC-----TALESSPGLVFPSRDPQYFDLRNNL 292
            L L+      ++ L  L  NL  L          ++L+    L              +L
Sbjct: 69  KLFLNGNKLTDIKPLTNLK-NLGWLFLDENKIKDLSSLKDLKKL-------------KSL 114

Query: 293 KLDRNEIREI 302
            L+ N I +I
Sbjct: 115 SLEHNGISDI 124

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 73.0 bits (179), Expect = 2e-14
 Identities = 39/231 (16%), Positives = 81/231 (35%), Gaps = 29/231 (12%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYL 97
           ++  L  L L     L  LP GIF     L  L +     L+ + +    +  +++ + L
Sbjct: 121 NVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATTSLQNLQL 178

Query: 98  NGTAIEELPSSIECLSGLSALYLDHCKRLKSLP--SSLCKLK----SLNSIYLRWCSSLK 151
           +   +  +  S+  +  L    + +   L +L    ++ +L     S+N +       L 
Sbjct: 179 SSNRLTHVDLSL--IPSLFHANVSYN-LLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235

Query: 152 SL---------PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGI 202
            L            L N   L  ++     + ++         F  +Q L  LY+++  +
Sbjct: 236 ILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHP-----FVKMQRLERLYISNNRL 290

Query: 203 TELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLP 253
             L      +  L  L L  N+   +  +     +L  L L +   + +L 
Sbjct: 291 VALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHN-SIVTLK 340

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 65.3 bits (159), Expect = 7e-12
 Identities = 45/273 (16%), Positives = 89/273 (32%), Gaps = 29/273 (10%)

Query: 40  LHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYL 97
            +     +++++              L   K +       ++ LP   + S   +E++ L
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS-TMRKLPAALLDSFRQVELLNL 82

Query: 98  NGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSS-LCKLKSLNSIYLRWCSSLKSLPN 155
           N   IEE+ +        +  LY+     ++ LP      +  L  + L     L SLP 
Sbjct: 83  NDLQIEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERN-DLSSLPR 140

Query: 156 EL-GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSL 214
            +  N   L +L+     +  +         F    +L +L L+   +T +   L  +  
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDT-----FQATTSLQNLQLSSNRLTHVD--LSLIPS 193

Query: 215 LLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPC-NLSELDAHHCTALESS 273
           L    +  N    L         +  L  S+   +  +       L+ L   H   L  +
Sbjct: 194 LFHANVSYNLLSTLAI----PIAVEELDASHN-SINVVRGPVNVELTILKLQH-NNLTDT 247

Query: 274 PGLVFPSRDPQYFDLRNNLKLDRNEIREILEDA 306
             L+          L   + L  NE+ +I+   
Sbjct: 248 AWLLNYPG------LV-EVDLSYNELEKIMYHP 273

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 54.9 bits (132), Expect = 1e-08
 Identities = 33/204 (16%), Positives = 66/204 (32%), Gaps = 32/204 (15%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFR-----------------LEFLKELDLWGCSKLKTL 83
               L NL L++ + L  +   +                      ++ELD      +  +
Sbjct: 169 ATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVV 226

Query: 84  PEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSI 142
               +   + ++ L    + +    +    GL  + L +   L+ +      K++ L  +
Sbjct: 227 RGPVNV-ELTILKLQHNNLTDTAW-LLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERL 283

Query: 143 YLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGI 202
           Y+   + L +L      +  L  L+     +  V        N      L +LYL    I
Sbjct: 284 YISN-NRLVALNLYGQPIPTLKVLDLSHNHLLHVE------RNQPQFDRLENLYLDHNSI 336

Query: 203 TELPENLGQLSLLLELYLEKNNFE 226
             L   L     L  L L  N+++
Sbjct: 337 VTLK--LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 53.4 bits (128), Expect = 5e-08
 Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 32/229 (13%)

Query: 104 ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE-LGNLEA 162
            + S+++       +++D   +          L +   +  +  + ++ LP   L +   
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQ 76

Query: 163 LNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQ-LSLLLELYLE 221
           +  LN     I E+         F     +  LY+    I  LP ++ Q + LL  L LE
Sbjct: 77  VELLNLNDLQIEEIDTYA-----FAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLE 131

Query: 222 KNNFERLPESI-IHLSKLAYLKLSYCERLQSLPK-----LPCNLSELDAHHCTALESSPG 275
           +N+   LP  I  +  KL  L +S    L+ +          +L  L       L     
Sbjct: 132 RNDLSSLPRGIFHNTPKLTTLSMSNN-NLERIEDDTFQATT-SLQNLQLSSN-RLTHVDL 188

Query: 276 LVFPSRDPQYFDLRNN-------------LKLDRNEIREILEDAQQEIQ 311
            + PS    + ++  N             L    N I  +      E+ 
Sbjct: 189 SLIPSL--FHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELT 235

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 71.8 bits (177), Expect = 2e-14
 Identities = 42/221 (19%), Positives = 79/221 (35%), Gaps = 31/221 (14%)

Query: 41  HLDKLVNLNLNNCK---SLRILPPGIFRLEFLKELDLWGCSKLK-TLP-EISSAGNIEVM 95
              ++ NL+L+         I P  +  L +L  L + G + L   +P  I+    +  +
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPI-PSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 96  YLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP 154
           Y+  T +   +P  +  +  L  L   +     +LP S+  L +L  I         ++P
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 155 NELGNLEAL--------NSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-EL 205
           +  G+   L        N L   G    ++P +   LN       L  + L+   +  + 
Sbjct: 167 DSYGSFSKLFTSMTISRNRLT--G----KIPPTFANLN-------LAFVDLSRNMLEGDA 213

Query: 206 PENLGQLSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSY 245
               G      +++L KN+    L   +     L  L L  
Sbjct: 214 SVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRN 253

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 55.2 bits (134), Expect = 6e-09
 Identities = 31/129 (24%), Positives = 47/129 (36%), Gaps = 24/129 (18%)

Query: 129 LPSSLCKLKSLNSIYLRWC--SSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNF 186
           L  +  +   +N++ L          +P+ L NL  LN L             I  +NN 
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY------------IGGINNL 89

Query: 187 DG--------LQNLTSLYLTDCGIT-ELPENLGQLSLLLELYLEKNNFE-RLPESIIHLS 236
            G        L  L  LY+T   ++  +P+ L Q+  L+ L    N     LP SI  L 
Sbjct: 90  VGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 237 KLAYLKLSY 245
            L  +    
Sbjct: 150 NLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.8 bits (133), Expect = 8e-09
 Identities = 43/209 (20%), Positives = 73/209 (34%), Gaps = 24/209 (11%)

Query: 41  HLDKLVNLNLNNCKSLR-ILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLN 98
           +L  L  L +    +L   +PP I +L  L  L +   +    +P  +S    +  +  +
Sbjct: 74  NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133

Query: 99  GTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSL-NSIYLRWCSSLKSLPNE 156
             A+   LP SI  L  L  +  D  +   ++P S      L  S+ +        +P  
Sbjct: 134 YNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193

Query: 157 LGNLEALNSLNAEGTAIR-EVPLSIVRL----------NNFDG-------LQNLTSLYLT 198
             NL  L  ++     +  +  +               N+           +NL  L L 
Sbjct: 194 FANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLR 252

Query: 199 DCGIT-ELPENLGQLSLLLELYLEKNNFE 226
           +  I   LP+ L QL  L  L +  NN  
Sbjct: 253 NNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.1 bits (177), Expect = 3e-14
 Identities = 51/285 (17%), Positives = 97/285 (34%), Gaps = 26/285 (9%)

Query: 33  SPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEF----LKELDLWGCSKLKTLPEISS 88
           SP   L      L + + N    L      +  +EF    L  L  +  S+   + E+  
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 89  AG--NIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLCK-LKSLNSIYL 144
                I  +++    +    S++   L  +  + +++ K +  +P S  + LKSL  + L
Sbjct: 283 VETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFLDL 341

Query: 145 RWC---SSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG 201
                           G   +L +L      +R +  +         L+NLTSL ++   
Sbjct: 342 SENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTG---EILLTLKNLTSLDISRNT 398

Query: 202 ITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSE 261
              +P++      +  L L       +   I     L  L +S    L S       L E
Sbjct: 399 FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCI--PQTLEVLDVSNN-NLDSFSLFLPRLQE 455

Query: 262 LDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDA 306
           L       L++ P             L   +K+ RN+++ + +  
Sbjct: 456 LYISRN-KLKTLPDASLFPV------LL-VMKISRNQLKSVPDGI 492

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 5e-13
 Identities = 43/294 (14%), Positives = 91/294 (30%), Gaps = 30/294 (10%)

Query: 26  ASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLP 84
             N +      SL  +L  L  L + N ++   +    F  L  L EL++     L+   
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKA-LSLRNYQ 164

Query: 85  E--ISSAGNIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNS 141
              + S  +I  + L+ +    L     + LS +  L L      +   S L   +  + 
Sbjct: 165 SQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSP 224

Query: 142 IYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQ----------- 190
           +                 L  L     E + +     ++  L +F+  +           
Sbjct: 225 MKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVE 284

Query: 191 --NLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPESII-HLSKLAYLKLSYC 246
              +  L++    +          L  +  + +E +    +P S   HL  L +L LS  
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 247 ERLQSLPKLPC-------NLSELDAHHC--TALESSPGLVFPSRDPQYFDLRNN 291
             +               +L  L        +++ +  ++   ++    D+  N
Sbjct: 345 -LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 40/246 (16%), Positives = 82/246 (33%), Gaps = 45/246 (18%)

Query: 23  ISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT 82
           +   +   +   +    +    +  L++        L      LE +K + +   SK+  
Sbjct: 266 LGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN-SKVFL 324

Query: 83  LPEISSAG--NIEVMYLNGTAIEEL----PSSIECLSGLSALYLDHCK--RLKSLPSSLC 134
           +P   S    ++E + L+   + E      +       L  L L       ++     L 
Sbjct: 325 VPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILL 384

Query: 135 KLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP------LSIVRLNN--- 185
            LK+L S+ +   +    +P+     E +  LN   T IR V       L ++ ++N   
Sbjct: 385 TLKNLTSLDISRNT-FHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNL 443

Query: 186 ---FDGLQNLTSLYLTDCGITELPEN-----------------------LGQLSLLLELY 219
                 L  L  LY++   +  LP+                          +L+ L +++
Sbjct: 444 DSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

Query: 220 LEKNNF 225
           L  N +
Sbjct: 504 LHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 38/191 (19%), Positives = 79/191 (41%), Gaps = 22/191 (11%)

Query: 124 KRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVR 182
           +   S+PS L    ++ S+ L +   +  + +  L     L  L  + + I  +      
Sbjct: 15  RSFTSIPSGL--TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDA-- 69

Query: 183 LNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPESII--HLSKLA 239
              F  L +L  L L+D  ++ L  +  G LS L  L L  N ++ L  + +  +L+ L 
Sbjct: 70  ---FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 240 YLKLSYCERLQSLPKLPC----NLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLD 295
            L++   E    + ++      +L+EL+      +++     + S+  +     ++L L 
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELE------IKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 296 RNEIREILEDA 306
            +E   +LE  
Sbjct: 181 LSESAFLLEIF 191

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 51/242 (21%), Positives = 83/242 (34%), Gaps = 37/242 (15%)

Query: 39  TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMY 96
           +L  D     +  + +S   +P G+     +K LDL    K+  +    + +  N++V+ 
Sbjct: 1   SLSCDASGVCDGRS-RSFTSIPSGLTA--AMKSLDLSFN-KITYIGHGDLRACANLQVLI 56

Query: 97  LNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSL-- 153
           L  + I  +       L  L  L L               L SL+S +    SSLK L  
Sbjct: 57  LKSSRINTIEGDAFYSLGSLEHLDLSDNH-----------LSSLSSSWFGPLSSLKYLNL 105

Query: 154 ----------PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT 203
                      +   NL  L +L            S +R  +F GL +L  L +    + 
Sbjct: 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVET----FSEIRRIDFAGLTSLNELEIKALSLR 161

Query: 204 ELPEN-LGQLSLLLELYLEKNNFERLPESII-HLSKLAYLKLSYCERLQSLPKLPCNLSE 261
                 L  +  +  L L  +    L E     LS + YL+L     L      P  + E
Sbjct: 162 NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDT-NLARFQFSPLPVDE 220

Query: 262 LD 263
           + 
Sbjct: 221 VS 222

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 71.2 bits (175), Expect = 4e-14
 Identities = 45/215 (20%), Positives = 85/215 (39%), Gaps = 23/215 (10%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLN 98
            L KL  L ++    L  +PP +     L EL +    +++ +P+   +G  N+  + + 
Sbjct: 100 PLRKLQKLYISKNH-LVEIPPNLPS--SLVELRIHDN-RIRKVPKGVFSGLRNMNCIEMG 155

Query: 99  GTAIEELPSSIECLSGLSALYLDHCK-RLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE- 156
           G  +E          GL   YL   + +L  +P  L   ++LN ++L   + ++++  E 
Sbjct: 156 GNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDH-NKIQAIELED 212

Query: 157 LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLL 216
           L     L  L      IR +            L  L  L+L +  ++ +P  L  L LL 
Sbjct: 213 LLRYSKLYRLGLGHNQIRMIENGS-----LSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267

Query: 217 ELYLEKNNFERLPESI-------IHLSKLAYLKLS 244
            +YL  NN  ++  +        +  +    + L 
Sbjct: 268 VVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLF 302

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 69.7 bits (171), Expect = 1e-13
 Identities = 46/223 (20%), Positives = 84/223 (37%), Gaps = 16/223 (7%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPE 85
           +N  ++         L  L  L L N K +  +    F  L  L++L +   + L  +P 
Sbjct: 63  NNDISELRKDDFK-GLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISK-NHLVEIPP 119

Query: 86  ISSAGNIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYL 144
              + ++  + ++   I ++P  +   L  ++ + +     L++          L   YL
Sbjct: 120 NLPS-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGLKLNYL 177

Query: 145 RWCS-SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT 203
           R     L  +P +L   E LN L+ +   I+ + L      +      L  L L    I 
Sbjct: 178 RISEAKLTGIPKDL--PETLNELHLDHNKIQAIEL-----EDLLRYSKLYRLGLGHNQIR 230

Query: 204 ELPEN-LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245
            +    L  L  L EL+L+ N   R+P  +  L  L  + L  
Sbjct: 231 MIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHT 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 51.9 bits (125), Expect = 1e-07
 Identities = 42/224 (18%), Positives = 80/224 (35%), Gaps = 29/224 (12%)

Query: 91  NIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSS 149
           ++ V+  +   ++ +P  I      + L L +   +  L       L+ L ++ L     
Sbjct: 34  HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNNK- 89

Query: 150 LKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN 208
           +  +  +    L  L  L      + E+P ++          +L  L + D  I ++P+ 
Sbjct: 90  ISKIHEKAFSPLRKLQKLYISKNHLVEIPPNL--------PSSLVELRIHDNRIRKVPKG 141

Query: 209 -LGQLSLLLELYLEKNNFER--LPESIIHLSKLAYLKLSYCERLQSLPK-LPCNLSELDA 264
               L  +  + +  N  E            KL YL++S   +L  +PK LP  L+EL  
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPKDLPETLNELHL 200

Query: 265 HHCTALESSPGLVFPSRDPQYFDLRN--NLKLDRNEIREILEDA 306
            H   +++                     L L  N+IR I   +
Sbjct: 201 DH-NKIQAIELEDLL-------RYSKLYRLGLGHNQIRMIENGS 236

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 32/187 (17%), Positives = 64/187 (34%), Gaps = 34/187 (18%)

Query: 41  HLDKLVNLNL-NNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG 99
            L  +  + +  N        PG F    L  L +    KL  +P+      +  ++L+ 
Sbjct: 145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEA-KLTGIPK-DLPETLNELHLDH 202

Query: 100 TAIEELPS-SIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNEL 157
             I+ +    +   S L  L L H + ++ + + SL  L +L  ++L     L  +P  L
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNNK-LSRVPAGL 260

Query: 158 GNLEALNSLNAEGTAIREVP---------------LSIVRLNN------------FDGLQ 190
            +L+ L  +      I +V                 + + L N            F  + 
Sbjct: 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 191 NLTSLYL 197
           +  ++  
Sbjct: 321 DRLAIQF 327

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 71.6 bits (176), Expect = 6e-14
 Identities = 46/238 (19%), Positives = 87/238 (36%), Gaps = 26/238 (10%)

Query: 26  ASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLP 84
             N  +K  + + +  L  L  L+L   +  + L    +R LE + E+ L    K   L 
Sbjct: 389 TKNKISKIESDAFS-WLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLT 446

Query: 85  E--ISSAGNIEVMYLNG---TAIEELPSSIECLSGLSALYLDHCKRLKSLPSS-LCKLKS 138
               +   +++ + L       ++  PS  + L  L+ L L +   + ++    L  L+ 
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDMLEGLEK 505

Query: 139 LNSIYLR--------WCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQ 190
           L  + L+          ++       L  L  L+ LN E     E+P+ +     F  L 
Sbjct: 506 LEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEV-----FKDLF 560

Query: 191 NLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPESIIH--LSKLAYLKLSY 245
            L  + L    +  LP +       L  L L+KN    + + +       L  L + +
Sbjct: 561 ELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRF 618

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 47/277 (16%), Positives = 82/277 (29%), Gaps = 40/277 (14%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPE 85
            N   + P  + T    +L +L++     +  L P + + L  LK L+L    +L  L  
Sbjct: 34  HNQLRRLPAANFT-RYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQLS- 89

Query: 86  ISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLR 145
                                 +    + L+ L+L      K   +   K K+L ++ L 
Sbjct: 90  --------------------DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 146 WCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL 205
                 +       LE L  L      I+ +        +     +L  L L+   I E 
Sbjct: 130 HNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE---ELDIFANSSLKKLELSSNQIKEF 186

Query: 206 PEN-LGQLSLLLELYLEKNNFERLPESII----HLSKLAYLKLSYCERLQSLPKL----- 255
                  +  L  L+L            +      + +  L LS   +L +         
Sbjct: 187 SPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGL 245

Query: 256 -PCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN 291
              NL+ LD  +                 +YF L  N
Sbjct: 246 KWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN 282

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 69.3 bits (170), Expect = 3e-13
 Identities = 42/247 (17%), Positives = 81/247 (32%), Gaps = 21/247 (8%)

Query: 26  ASNFFTKSPNHSLT-LHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTL 83
           ++N      +  L       L  L L++ + ++   PG F  +  L  L L       +L
Sbjct: 153 SNNKIQALKSEELDIFANSSLKKLELSSNQ-IKEFSPGCFHAIGRLFGLFLNNVQLGPSL 211

Query: 84  PEISSAG----NIEVMYLNGTAIEELPSSI---ECLSGLSALYLDHCKRLKSLPSSLCKL 136
            E         +I  + L+ + +    ++       + L+ L L +         S   L
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

Query: 137 KSLNSIYLRWCSSLKSLPNELGNLEALNSL----NAEGTAIREVPLSIVRLNNFDGLQNL 192
             L   +L + +      + L  L  +  L    +    +I    L  +   +F  L+ L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 193 TSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPESI-----IHLSKLAYLKLSYC 246
             L + D  I  +  N    L  L  L L  +       +      +  S L  L L+  
Sbjct: 332 EHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKN 391

Query: 247 ERLQSLP 253
            ++  + 
Sbjct: 392 -KISKIE 397

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 62.3 bits (152), Expect = 6e-11
 Identities = 36/190 (18%), Positives = 66/190 (34%), Gaps = 17/190 (8%)

Query: 110 ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAE 169
           +C          H  +L  +P  L    ++  + L      +           L SL+  
Sbjct: 1   KCTVSHEVADCSHL-KLTQVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVG 57

Query: 170 GTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERL 228
              I ++   +        L  L  L L    +++L +      + L EL+L  N+ +++
Sbjct: 58  FNTISKLEPEL-----CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKI 112

Query: 229 PESII-HLSKLAYLKLSYCERLQSLPKLPC----NLSELDAHHC--TALESSPGLVFPSR 281
             +       L  L LS+   L S          NL EL   +    AL+S    +F + 
Sbjct: 113 KNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

Query: 282 DPQYFDLRNN 291
             +  +L +N
Sbjct: 172 SLKKLELSSN 181

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 61.6 bits (150), Expect = 1e-10
 Identities = 52/249 (20%), Positives = 83/249 (33%), Gaps = 29/249 (11%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNN--------CKSLRILPPGIFR-LEFLKELDLWGC 77
            N      +HSL   L  +  LNL            SL  +    F+ L+ L+ L++   
Sbjct: 281 YNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339

Query: 78  SKLKTLPEISSAGNIEVMYL----NGTAIEELPSSI---ECLSGLSALYLDHCKRLKSLP 130
             +  +      G I + YL    + T++  L +        S L  L L   K  K   
Sbjct: 340 -DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIES 398

Query: 131 SSLCKLKSLNSIYLRWCSSLKSLP-NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGL 189
            +   L  L  + L      + L   E   LE +  +        ++  +      F  +
Sbjct: 399 DAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNS-----FALV 453

Query: 190 QNLTSLYLTDC---GITELPENLGQLSLLLELYLEKNNFERLPESIIH-LSKLAYLKLSY 245
            +L  L L       +   P     L  L  L L  NN   + + ++  L KL  L L +
Sbjct: 454 PSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQH 513

Query: 246 CERLQSLPK 254
              L  L K
Sbjct: 514 N-NLARLWK 521

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.0 bits (172), Expect = 1e-13
 Identities = 37/218 (16%), Positives = 78/218 (35%), Gaps = 26/218 (11%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLN 98
            L KL  L L+  + L+ LP  + +   L+EL +    ++  + +    G   + V+ L 
Sbjct: 98  PLVKLERLYLSKNQ-LKELPEKMPK--TLQELRVHEN-EITKVRKSVFNGLNQMIVVELG 153

Query: 99  GTAIEEL---PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN 155
              ++       + + +  LS + +     + ++P  L    SL  ++L     +  +  
Sbjct: 154 TNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL--PPSLTELHLDGNK-ITKVDA 209

Query: 156 E-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSL 214
             L  L  L  L     +I  V              +L  L+L +  + ++P  L     
Sbjct: 210 ASLKGLNNLAKLGLSFNSISAVDNGS-----LANTPHLRELHLNNNKLVKVPGGLADHKY 264

Query: 215 LLELYLEKNNFERLPESII-------HLSKLAYLKLSY 245
           +  +YL  NN   +  +           +  + + L  
Sbjct: 265 IQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFS 302

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 37/225 (16%), Positives = 87/225 (38%), Gaps = 30/225 (13%)

Query: 91  NIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSS 149
           ++ V+  +   +E++P  +      + L L + K +  +       LK+L+++ L     
Sbjct: 32  HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK- 87

Query: 150 LKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN 208
           +  +       L  L  L      ++E+P  +         + L  L + +  IT++ ++
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKELPEKM--------PKTLQELRVHENEITKVRKS 139

Query: 209 -LGQLSLLLELYLEKNNFERL---PESIIHLSKLAYLKLSYCERLQSLPK-LPCNLSELD 263
               L+ ++ + L  N  +       +   + KL+Y++++    + ++P+ LP +L+EL 
Sbjct: 140 VFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELH 198

Query: 264 AHHCTALESSPGLVFPSRDPQYFDLRN--NLKLDRNEIREILEDA 306
                 +                 L N   L L  N I  +   +
Sbjct: 199 LDGN-KITKVDAASLKG-------LNNLAKLGLSFNSISAVDNGS 235

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 1e-06
 Identities = 29/188 (15%), Positives = 71/188 (37%), Gaps = 35/188 (18%)

Query: 41  HLDKLVNLNL-NNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLN 98
            L++++ + L  N      +  G F+ ++ L  + +     + T+P+     ++  ++L+
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPP-SLTELHLD 200

Query: 99  GTAIEELPS-SIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNE 156
           G  I ++ + S++ L+ L+ L L     + ++ + SL     L  ++L     L  +P  
Sbjct: 201 GNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNNK-LVKVPGG 258

Query: 157 LGNLEALNSLNAEGTAIREVP---------------LSIVRLNN------------FDGL 189
           L + + +  +      I  +                 S V L +            F  +
Sbjct: 259 LADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 190 QNLTSLYL 197
               ++ L
Sbjct: 319 YVRAAVQL 326

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 69.4 bits (170), Expect = 1e-13
 Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 17/199 (8%)

Query: 52  NC--KSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGTAIEELPS 107
           NC  ++L  LPP + +      L L   + L T    +      +  + L+   + +L  
Sbjct: 16  NCDKRNLTALPPDLPKD--TTILHLSE-NLLYTFSLATLMPYTRLTQLNLDRAELTKLQV 72

Query: 108 SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL-GNLEALNSL 166
               L  L  L L H  +L+SLP     L +L  + + +   L SLP      L  L  L
Sbjct: 73  DGT-LPVLGTLDLSH-NQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQEL 129

Query: 167 NAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNF 225
             +G  ++ +P  +           L  L L +  +TELP  L   L  L  L L++N+ 
Sbjct: 130 YLKGNELKTLPPGL-----LTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL 184

Query: 226 ERLPESIIHLSKLAYLKLS 244
             +P+       L +  L 
Sbjct: 185 YTIPKGFFGSHLLPFAFLH 203

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 67.1 bits (164), Expect = 6e-13
 Identities = 42/180 (23%), Positives = 73/180 (40%), Gaps = 12/180 (6%)

Query: 47  NLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEEL 105
            L+L+    L             L +L+L    +L  L    +   +  + L+   ++ L
Sbjct: 35  ILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 106 PSSIECLSGLSALYLDHCKRLKSLPSSL-CKLKSLNSIYLRWCSSLKSLPNEL-GNLEAL 163
           P   + L  L+ L +   + L SLP      L  L  +YL+  + LK+LP  L      L
Sbjct: 93  PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLK-GNELKTLPPGLLTPTPKL 150

Query: 164 NSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKN 223
             L+     + E+P  +      +GL+NL +L L +  +  +P+      LL   +L  N
Sbjct: 151 EKLSLANNNLTELPAGL-----LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 2e-09
 Identities = 33/159 (20%), Positives = 54/159 (33%), Gaps = 18/159 (11%)

Query: 111 CLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEG 170
            ++    +  D  + L +LP  L   K    ++L            L     L  LN + 
Sbjct: 8   KVASHLEVNCDK-RNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 171 TAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPE 230
             + ++ +          L  L +L L+   +  LP     L  L  L +  N    LP 
Sbjct: 65  AELTKLQV-------DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 231 SII-HLSKLAYLKLSYCERLQSLP-----KLPCNLSELD 263
             +  L +L  L L     L++LP       P  L +L 
Sbjct: 118 GALRGLGELQELYLKGN-ELKTLPPGLLTPTP-KLEKLS 154

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 21/210 (10%)

Query: 47  NLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNGTAIE 103
           NL+L+    LR L    F     L+ LDL  C +++T+ +    S  ++  + L G  I+
Sbjct: 32  NLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 104 ELPSSI-ECLSGLSALYLDHCKRLKSLPSSL-CKLKSLNSIYLRWCSSLKSLPNE--LGN 159
            L       LS L  L       L SL +     LK+L  + +   + ++S        N
Sbjct: 90  SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSN 147

Query: 160 LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT----SLYLTDCGITELPENLGQLSLL 215
           L  L  L+     I+ +  +         L  +     SL L+   +  +     +   L
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTD-----LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 202

Query: 216 LELYLEKNNFERLPESII-HLSKLAYLKLS 244
            EL L+ N  + +P+ I   L+ L  + L 
Sbjct: 203 KELALDTNQLKSVPDGIFDRLTSLQKIWLH 232

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 4e-10
 Identities = 40/187 (21%), Positives = 67/187 (35%), Gaps = 22/187 (11%)

Query: 118 LYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNEL-GNLEALNSLNAEGTAIRE 175
           L L     L+ L S S      L  + L  C  ++++ +    +L  L++L   G  I+ 
Sbjct: 33  LDLSF-NPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQS 90

Query: 176 VPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNFERLPESII- 233
           + L       F GL +L  L   +  +  L     G L  L EL +  N  +        
Sbjct: 91  LALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF 145

Query: 234 -HLSKLAYLKLSYCERLQSLP--------KLPCNLSELDAHHCTALESSPGLVFPSRDPQ 284
            +L+ L +L LS   ++QS+         ++P     LD      +       F     +
Sbjct: 146 SNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLK 203

Query: 285 YFDLRNN 291
              L  N
Sbjct: 204 ELALDTN 210

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 30/164 (18%), Positives = 52/164 (31%), Gaps = 33/164 (20%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNG 99
            L  L  L       L  L       L+ LKEL++   + +++                 
Sbjct: 98  GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNV-AHNLIQSFKL-------------- 141

Query: 100 TAIEELPSSIECLSGLSALYLDHCKRLKSLP----SSLCKLKSLNSIYLRWCSSLKSLPN 155
                 P     L+ L  L L   K ++S+       L ++  LN       + +  +  
Sbjct: 142 ------PEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 156 ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTD 199
                  L  L  +   ++ VP  I     FD L +L  ++L  
Sbjct: 195 GAFKEIRLKELALDTNQLKSVPDGI-----FDRLTSLQKIWLHT 233

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 60/341 (17%), Positives = 101/341 (29%), Gaps = 64/341 (18%)

Query: 18  KLKQIISRASNFFTKSPNHSLTLHLD---------------KLVNLNLNNCKSLRILPPG 62
            ++ I      F  ++P  +L+L +                KL  L L    +   +   
Sbjct: 164 YIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKT 223

Query: 63  IFR-LEFLKELDLW-----GCSKLKTLPEISSAG----NIEVMYLNGTAIEEL-PSSIEC 111
             + L  L    L          L+        G     I+   L  T           C
Sbjct: 224 CLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHC 283

Query: 112 LSGLSALYLDHCKRLKSLPS-----SLCKLK----SLNSIYLRWCSSLKSL--------- 153
           L+ +SA+ L     +K L           L      L          LKSL         
Sbjct: 284 LANVSAMSLAGVS-IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSI 342

Query: 154 PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLS 213
             +   L +L+ L+    A+              G  +L  L L+  G   +  N   L 
Sbjct: 343 SFKKVALPSLSYLDLSRNALSFSGCCSYS---DLGTNSLRHLDLSFNGAIIMSANFMGLE 399

Query: 214 LLLELYLEKNNFERLPESII--HLSKLAYLKLSYCERLQSLPKLPC----NLSELDAHHC 267
            L  L  + +  +R+ E      L KL YL +SY    +           +L+ L     
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT-NTKIDFDGIFLGLTSLNTLKMAGN 458

Query: 268 TALESSPGLVFPSRDPQYFDLRN--NLKLDRNEIREILEDA 306
           +  +++   VF        +  N   L L + ++ +I    
Sbjct: 459 SFKDNTLSNVFA-------NTTNLTFLDLSKCQLEQISWGV 492

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 57/264 (21%), Positives = 100/264 (37%), Gaps = 26/264 (9%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
              K  +L++  C+ L+  P     L FLK L L   +K     +  +  ++  + L+  
Sbjct: 305 KHFKWQSLSIIRCQ-LKQFPT--LDLPFLKSLTL-TMNKGSISFKKVALPSLSYLDLSRN 360

Query: 101 AIEELPS---SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE- 156
           A+        S    + L  L L        + ++   L+ L  +  +  S+LK +    
Sbjct: 361 ALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDFQH-STLKRVTEFS 418

Query: 157 -LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE--LPENLGQLS 213
              +LE L  L+   T  +     I     F GL +L +L +      +  L       +
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGI-----FLGLTSLNTLKMAGNSFKDNTLSNVFANTT 473

Query: 214 LLLELYLEKNNFERLPESIIH-LSKLAYLKLSYCERLQSLPKLP----CNLSELDAHHCT 268
            L  L L K   E++   +   L +L  L +S+   L  L         +LS LD     
Sbjct: 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN-NLLFLDSSHYNQLYSLSTLDCSFN- 531

Query: 269 ALESSPGLVFPSRDP-QYFDLRNN 291
            +E+S G++        +F+L NN
Sbjct: 532 RIETSKGILQHFPKSLAFFNLTNN 555

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.8 bits (161), Expect = 5e-12
 Identities = 54/275 (19%), Positives = 84/275 (30%), Gaps = 41/275 (14%)

Query: 45  LVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 103
             N++L+    L+IL    F     L+ LDL  C +++T+                    
Sbjct: 34  TKNIDLSFNP-LKILKSYSFSNFSELQWLDLSRC-EIETIE------------------- 72

Query: 104 ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE-LGNLEA 162
               +   L  LS L L         P S   L SL ++       L SL +  +G L  
Sbjct: 73  --DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLESFPIGQLIT 129

Query: 163 LNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE----NLGQLS-LLLE 217
           L  LN     I    L       F  L NL  + L+   I  +       L +   + L 
Sbjct: 130 LKKLNVAHNFIHSCKLP----AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185

Query: 218 LYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPC-NLSELDAHHCTALESSPGL 276
           L +  N  + + +      KL  L L       ++ K    NL+ L  H     E     
Sbjct: 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDER 245

Query: 277 VFPSRDPQYFD-----LRNNLKLDRNEIREILEDA 306
                +P   +       +  +L            
Sbjct: 246 NLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK 280

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 41/207 (19%), Positives = 73/207 (35%), Gaps = 16/207 (7%)

Query: 27  SNFFTKSPNHSLT-LHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE 85
            N  + S   S + L  + L +L+L+      I+      LE L+ LD    S LK + E
Sbjct: 359 RNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF-QHSTLKRVTE 416

Query: 86  IS---SAGNIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSS-LCKLKSLN 140
            S   S   +  + ++ T  +     I   L+ L+ L +       +  S+      +L 
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT 476

Query: 141 SIYLRWCSSLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTD 199
            + L  C  L+ +       L  L  LN     +  +  S      ++ L +L++L  + 
Sbjct: 477 FLDLSKCQ-LEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH-----YNQLYSLSTLDCSF 530

Query: 200 CGITELPEN-LGQLSLLLELYLEKNNF 225
             I             L    L  N+ 
Sbjct: 531 NRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 62.7 bits (153), Expect = 5e-11
 Identities = 37/204 (18%), Positives = 62/204 (30%), Gaps = 25/204 (12%)

Query: 91  NIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS 149
           + + + L+   ++ L   S    S L  L L  C+       +   L  L+++ L     
Sbjct: 33  STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92

Query: 150 LKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE--LPE 207
               P     L +L +L A  T +  +            L  L  L +    I    LP 
Sbjct: 93  QSFSPGSFSGLTSLENLVAVETKLASLESFP-----IGQLITLKKLNVAHNFIHSCKLPA 147

Query: 208 NLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHC 267
               L+ L+ + L  N  + +  +                 LQ L + P     LD    
Sbjct: 148 YFSNLTNLVHVDLSYNYIQTITVND----------------LQFLRENPQVNLSLDMSLN 191

Query: 268 TALESSPGLVFPSRDPQYFDLRNN 291
             ++      F         LR N
Sbjct: 192 -PIDFIQDQAFQGIKLHELTLRGN 214

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 60.8 bits (148), Expect = 2e-10
 Identities = 45/286 (15%), Positives = 86/286 (30%), Gaps = 52/286 (18%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPE 85
            N      ++S + +  +L  L+L+ C+ +  +    +  L  L  L L G   +++   
Sbjct: 41  FNPLKILKSYSFS-NFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGN-PIQSFS- 96

Query: 86  ISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYL 144
                               P S   L+ L  L      +L SL S  + +L +L  + +
Sbjct: 97  --------------------PGSFSGLTSLENLVAVET-KLASLESFPIGQLITLKKLNV 135

Query: 145 RWCS-SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT----SLYLTD 199
                    LP    NL  L  ++     I+ +      +N+   L+       SL ++ 
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT-----VNDLQFLRENPQVNLSLDMSL 190

Query: 200 CGITELPENLGQLSLLLELYLEKNNF--ERLPESIIHLSKLAYLKLSYCERLQSLPKLP- 256
             I  + +   Q   L EL L  N      +   + +L+ L   +L      +    L  
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL-GEFKDERNLEI 249

Query: 257 -----------CNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN 291
                        + E    +               +     L   
Sbjct: 250 FEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV 295

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 42/273 (15%), Positives = 86/273 (31%), Gaps = 29/273 (10%)

Query: 26  ASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE 85
           A NF       +   +L  LV+++L+    ++ +     +  FL+E          +L  
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVNDLQ--FLREN----PQVNLSL-- 186

Query: 86  ISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSS----LCKLKSLNS 141
                      ++   I+ +         L  L L       ++  +    L  L     
Sbjct: 187 ----------DMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRL 236

Query: 142 IYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG 201
           I   +         E   +E L  +  +   +         +  F  L N++++ L    
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 202 ITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPC-NLS 260
           I  L  ++ +      L + +   ++ P     L  L  L L+  +   S  K+   +LS
Sbjct: 297 IKYLE-DVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALPSLS 353

Query: 261 ELDAHHC--TALESSPGLVFPSRDPQYFDLRNN 291
            LD      +           +   ++ DL  N
Sbjct: 354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFN 386

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 53/179 (29%), Positives = 85/179 (47%), Gaps = 16/179 (8%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLKTLPE 85
           SN  +  P+ +    L KL  L LN+   L+ LP GIF  L+ L+ L +    KL+ LP 
Sbjct: 46  SNKLSSLPSKAFH-RLTKLRLLYLND-NKLQTLPAGIFKELKNLETLWVTDN-KLQALPI 102

Query: 86  --ISSAGNIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLC-KLKSLNS 141
                  N+  + L+   ++ LP  + + L+ L+ L L + + L+SLP  +  KL SL  
Sbjct: 103 GVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE-LQSLPKGVFDKLTSLKE 161

Query: 142 IYLRWCSSLKSLPNEL-GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTD 199
           + L + + LK +P      L  L +L  +   ++ VP        FD L+ L  L L +
Sbjct: 162 LRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA-----FDSLEKLKMLQLQE 214

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 7e-10
 Identities = 51/162 (31%), Positives = 73/162 (45%), Gaps = 24/162 (14%)

Query: 154 PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL-GQL 212
                 L  L  L      ++ +P  I     F  L+NL +L++TD  +  LP  +  QL
Sbjct: 54  SKAFHRLTKLRLLYLNDNKLQTLPAGI-----FKELKNLETLWVTDNKLQALPIGVFDQL 108

Query: 213 SLLLELYLEKNNFERLPESI-IHLSKLAYLKLSYCERLQSLP-----KLPCNLSELDAHH 266
             L EL L++N  + LP  +   L+KL YL L Y   LQSLP     KL  +L EL  ++
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLT-SLKELRLYN 166

Query: 267 CTALESSPGLVFPSRDPQYFDLRN--NLKLDRNEIREILEDA 306
              L+  P   F         L     LKLD N+++ + E A
Sbjct: 167 -NQLKRVPEGAFD-------KLTELKTLKLDNNQLKRVPEGA 200

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 55/237 (23%), Positives = 94/237 (39%), Gaps = 18/237 (7%)

Query: 65  RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCK 124
                 + +L     +      +   +I+ +  N + I+ +   I+ L  ++ L+L+  K
Sbjct: 22  AFAETIKDNL-KKKSVTDAVTQNELNSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNK 79

Query: 125 RLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLN 184
            L  +   L  LK+L  ++L     +K L + L +L+ L SL+ E   I +       +N
Sbjct: 80  -LTDI-KPLANLKNLGWLFLDENK-VKDLSS-LKDLKKLKSLSLEHNGISD-------IN 128

Query: 185 NFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLS 244
               L  L SLYL +  IT++   L +L+ L  L LE N    +   +  L+KL  L LS
Sbjct: 129 GLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLS 186

Query: 245 YC--ERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEI 299
                 L++L  L  NL  L+      L            P      +   +    I
Sbjct: 187 KNHISDLRALAGLK-NLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 242

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.3 bits (162), Expect = 3e-12
 Identities = 60/267 (22%), Positives = 92/267 (34%), Gaps = 38/267 (14%)

Query: 45  LVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE 103
             NL+L+    LR L    F     L+ LDL  C +++T+                    
Sbjct: 30  TKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIE------------------- 68

Query: 104 ELPSSIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNE-LGNLE 161
               + + LS LS L L     ++SL   +   L SL  +      +L SL N  +G+L+
Sbjct: 69  --DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLK 124

Query: 162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE----NLGQLS-LLL 216
            L  LN     I+   L       F  L NL  L L+   I  +       L Q+  L L
Sbjct: 125 TLKELNVAHNLIQSFKLP----EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

Query: 217 ELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPC-NLSELDAHHCTALESSPG 275
            L L  N    +        +L  L L       ++ K     L+ L+ H     E    
Sbjct: 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 276 LVFPSRDPQYFDLRNNLKLDRNEIREI 302
                 D    +   NL ++   +  +
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYL 267

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.5 bits (160), Expect = 5e-12
 Identities = 46/201 (22%), Positives = 75/201 (37%), Gaps = 22/201 (10%)

Query: 104 ELPSSIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNE-LGNLE 161
           ++P ++        L L     L+ L S S      L  + L  C  ++++ +    +L 
Sbjct: 21  KIPDNLP--FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLS 76

Query: 162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYL 220
            L++L   G  I+ + L       F GL +L  L   +  +  L    +G L  L EL +
Sbjct: 77  HLSTLILTGNPIQSLALGA-----FSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNV 131

Query: 221 EKNNFERL--PESIIHLSKLAYLKLSY-------CERLQSLPKLPCNLSELDAHHCTALE 271
             N  +    PE   +L+ L +L LS        C  L+ L ++P     LD      + 
Sbjct: 132 AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN-PMN 190

Query: 272 SSPGLVFPSRDPQYFDLRNNL 292
                 F         LRNN 
Sbjct: 191 FIQPGAFKEIRLHKLTLRNNF 211

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 64.0 bits (156), Expect = 2e-11
 Identities = 39/206 (18%), Positives = 77/206 (37%), Gaps = 15/206 (7%)

Query: 40  LHLDKLVNLNL-NNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLP-EISSAGNIEVMY 96
           + L  L  L+L  N  S +            LK LDL     + T+         +E + 
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLD 402

Query: 97  LNGTAIEELP--SSIECLSGLSALYLDHCKRLKSLPSS-LCKLKSLNSIYLRWCS-SLKS 152
              + ++++   S    L  L  L + H    +   +     L SL  + +   S     
Sbjct: 403 FQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461

Query: 153 LPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQ 211
           LP+    L  L  L+     + ++  +      F+ L +L  L +    +  +P+    +
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTA-----FNSLSSLQVLNMASNQLKSVPDGIFDR 516

Query: 212 LSLLLELYLEKNNFERLPESIIHLSK 237
           L+ L +++L  N ++     I +LS+
Sbjct: 517 LTSLQKIWLHTNPWDCSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 63.2 bits (154), Expect = 3e-11
 Identities = 56/343 (16%), Positives = 109/343 (31%), Gaps = 67/343 (19%)

Query: 18  KLKQIISRASNFFTKSPNHSLTLHLD---------------KLVNLNLNNCKSLRILPPG 62
           K++ I         + P  +L+L L                +L  L L N      +   
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 63  IFR-LEFLKELDLW-----GCSKLKTLPE--ISSAGNIEVMYLNGTAIEELPSSI----E 110
             + L  L+   L          L+   +  +    N+ +       ++     I     
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 111 CLSGLSALYLDHCKRLKSLP--SSLCKLKSLNSIYLRWCS-------SLKSL-------- 153
           CL+ +S+  L     ++ +   S     + L  +  ++         SLK L        
Sbjct: 280 CLTNVSSFSLVSVT-IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338

Query: 154 -PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQL 212
                 +L +L  L+     +           +  G  +L  L L+  G+  +  N   L
Sbjct: 339 NAFSEVDLPSLEFLDLSRNGLSFKGCC---SQSDFGTTSLKYLDLSFNGVITMSSNFLGL 395

Query: 213 SLLLELYLEKNNFERLPESII--HLSKLAYLKLSYCERLQSLP-----KLPCNLSELDAH 265
             L  L  + +N +++ E  +   L  L YL +S+    +         L  +L  L   
Sbjct: 396 EQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLS-SLEVLKMA 453

Query: 266 HCTALESSPGLVFPSRDPQYFDLRN--NLKLDRNEIREILEDA 306
             +  E+    +F         LRN   L L + ++ ++   A
Sbjct: 454 GNSFQENFLPDIFTE-------LRNLTFLDLSQCQLEQLSPTA 489

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 53.6 bits (129), Expect = 3e-08
 Identities = 46/252 (18%), Positives = 80/252 (31%), Gaps = 18/252 (7%)

Query: 26  ASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGC--SKLKT 82
             N        + +  L  L  L       L  L       L+ LKEL++        K 
Sbjct: 84  TGNPIQSLALGAFS-GLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 83  LPEISSAGNIEVMYLNGTAIEELP-SSIECLSGLSA----LYLDHCKRLKSLPSSLCKLK 137
               S+  N+E + L+   I+ +  + +  L  +      L L     +  +     K  
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEI 200

Query: 138 SLNSIYLRWCS-SLKSLPNELGNLEALNSLNAEGTAIREVP-LSIVRLNNFDGLQNLTSL 195
            L+ + LR    SL  +   +  L  L          R    L     +  +GL NLT  
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 196 YLT----DCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQS 251
                  D  + ++ +    L+ +    L     ER+     +     +L+L  C+  Q 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQF 319

Query: 252 LPKLPCNLSELD 263
                 +L  L 
Sbjct: 320 PTLKLKSLKRLT 331

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 65.9 bits (161), Expect = 3e-12
 Identities = 44/239 (18%), Positives = 74/239 (30%), Gaps = 29/239 (12%)

Query: 43  DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAI 102
           D   +      +          +L  L  LD      +  +  I     +  +      I
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNNI 76

Query: 103 EELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEA 162
             L   +   + L+ L  D  K L +L   +  L  L  +       L  L   +     
Sbjct: 77  TTLD--LSQNTNLTYLACDSNK-LTNLD--VTPLTKLTYLNCDTNK-LTKLD--VSQNPL 128

Query: 163 LNSLNAEGTAIREVPLS--------------IVRLNNFDGLQNLTSLYLTDCGITELPEN 208
           L  LN     + E+ +S               +   +      LT+L  +   ITEL   
Sbjct: 129 LTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD-- 186

Query: 209 LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPC-NLSELDAHH 266
           + Q  LL  L  + NN  +L  +     +L +L  S   +L  +   P   L+  D   
Sbjct: 187 VSQNKLLNRLNCDTNNITKLDLN--QNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSV 242

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.4 bits (152), Expect = 5e-11
 Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 26/211 (12%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
               L  LN +    +  L   + +   L  LD     KL  +  ++    +     +  
Sbjct: 189 QNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSSN-KLTEID-VTPLTQLTYFDCSVN 243

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            + EL  S   LS L+ L+      L  +   L     L       C  +K L  ++ + 
Sbjct: 244 PLTELDVST--LSKLTTLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKEL--DVTHN 296

Query: 161 EALNSLNAEGTAIREVPLS----IVRLN---------NFDGLQNLTSLYLTDCGITELPE 207
             L  L+ +   I E+ LS    +V L          +      L SL   +  I +   
Sbjct: 297 TQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELDVSHNTKLKSLSCVNAHIQDFSS 356

Query: 208 NLGQLSLLLELYLEKNNFERLPESIIHLSKL 238
            +G++  L   +  +     +P+  +  + L
Sbjct: 357 -VGKIPALNNNFEAEGQTITMPKETLTNNSL 386

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 62.0 bits (151), Expect = 7e-11
 Identities = 47/256 (18%), Positives = 86/256 (33%), Gaps = 42/256 (16%)

Query: 37  SLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTL----------PEI 86
            L    +KL  L+++    L  L         L E+D+   ++L  L           ++
Sbjct: 110 YLNCDTNKLTKLDVSQNPLLTYL---NCARNTLTEIDVSHNTQLTELDCHLNKKITKLDV 166

Query: 87  SSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRW 146
           +    +  +  +   I EL   +     L+ L  D    +  L   L +   L  +    
Sbjct: 167 TPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNN-ITKLD--LNQNIQLTFLDCSS 221

Query: 147 CSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP 206
              L  +   +  L  L   +     + E+ +S         L  LT+L+     + E+ 
Sbjct: 222 NK-LTEID--VTPLTQLTYFDCSVNPLTELDVS--------TLSKLTTLHCIQTDLLEID 270

Query: 207 ENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE-------RLQSLPKLPCN- 258
             L   + L+    E     +  + + H ++L  L             +   L  L  N 
Sbjct: 271 --LTHNTQLIYFQAEGCRKIKELD-VTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNN 327

Query: 259 --LSELDAHHCTALES 272
             L+ELD  H T L+S
Sbjct: 328 TELTELDVSHNTKLKS 343

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.9 bits (104), Expect = 4e-05
 Identities = 29/130 (22%), Positives = 43/130 (33%), Gaps = 13/130 (10%)

Query: 139 LNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT 198
             S          +       L  L SL+   ++I ++          + L  LT L  T
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMT-------GIEKLTGLTKLICT 72

Query: 199 DCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPC- 257
              IT L   L Q + L  L  + N    L   +  L+KL YL      +L  L      
Sbjct: 73  SNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTN-KLTKLDVSQNP 127

Query: 258 NLSELDAHHC 267
            L+ L+    
Sbjct: 128 LLTYLNCARN 137

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 64.1 bits (156), Expect = 1e-11
 Identities = 35/163 (21%), Positives = 62/163 (38%), Gaps = 16/163 (9%)

Query: 91  NIEVMYLNGTAIEELPSSI--ECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWC 147
              ++ L+   +  L +      L+ L +L L H   L  + S +   + +L  + L   
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN 98

Query: 148 SSLKSLPNE-LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP 206
             L +L      +L+AL  L      I  V  +      F+ +  L  LYL+   I+  P
Sbjct: 99  H-LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-----FEDMAQLQKLYLSQNQISRFP 152

Query: 207 E----NLGQLSLLLELYLEKNNFERLPESII-HLSKLAYLKLS 244
                +  +L  L+ L L  N  ++LP + +  L       L 
Sbjct: 153 VELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 51.0 bits (122), Expect = 2e-07
 Identities = 34/202 (16%), Positives = 58/202 (28%), Gaps = 44/202 (21%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPE 85
            N  ++         L  L +L L++   L  +    F  +  L+ LDL     L TL  
Sbjct: 48  HNNLSRLRAEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSN-HLHTLD- 104

Query: 86  ISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYL 144
                                     L  L  L L +   +  +   +   +  L  +YL
Sbjct: 105 --------------------EFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYL 143

Query: 145 RWCSSLKSLPNE----LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT-- 198
                +   P E       L  L  L+     ++++PL+         L       L   
Sbjct: 144 SQN-QISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTD-----LQKLPAWVKNGLYLH 197

Query: 199 ------DCGITELPENLGQLSL 214
                 DC + +L  +     L
Sbjct: 198 NNPLECDCKLYQLFSHWQYRQL 219

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.9 bits (151), Expect = 1e-11
 Identities = 25/155 (16%), Positives = 51/155 (32%), Gaps = 9/155 (5%)

Query: 91  NIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSL 150
           ++  + L    + +L + IE    +  L +++     +  + +  L +L  + +      
Sbjct: 45  SLTYITLANINVTDL-TGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVT 101

Query: 151 KSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLG 210
                 L  L +L  L+   +A          L   + L  + S+ L+  G       L 
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAH-----DDSILTKINTLPKVNSIDLSYNGAITDIMPLK 156

Query: 211 QLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245
            L  L  L ++ +        I    KL  L    
Sbjct: 157 TLPELKSLNIQFDGVHDY-RGIEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 60.0 bits (146), Expect = 5e-11
 Identities = 32/166 (19%), Positives = 61/166 (36%), Gaps = 12/166 (7%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            ++ L  + L N     +   GI     +K+L +           IS   N+E + + G 
Sbjct: 42  QMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGK 98

Query: 101 AI-EELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGN 159
            +  +   ++  L+ L+ L + H     S+ + +  L  +NSI L +  ++  +   L  
Sbjct: 99  DVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKT 157

Query: 160 LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL 205
           L  L SLN +   + +           +    L  LY     I   
Sbjct: 158 LPELKSLNIQFDGVHD-------YRGIEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 58.0 bits (141), Expect = 3e-10
 Identities = 24/174 (13%), Positives = 59/174 (33%), Gaps = 15/174 (8%)

Query: 96  YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN 155
            L  ++   +  +   ++ L+ + L +   +  L + +    ++  + +       +   
Sbjct: 29  LLGQSSTANI--TEAQMNSLTYITLANIN-VTDL-TGIEYAHNIKDLTINNIH-ATNYNP 83

Query: 156 ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSL 214
            +  L  L  L   G  +    +      N  GL +LT L ++     +     +  L  
Sbjct: 84  -ISGLSNLERLRIMGKDVTSDKIP-----NLSGLTSLTLLDISHSAHDDSILTKINTLPK 137

Query: 215 LLELYLEKNNFERLPESIIHLSKLAYLKLSYCE--RLQSLPKLPCNLSELDAHH 266
           +  + L  N        +  L +L  L + +      + +   P  L++L A  
Sbjct: 138 VNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFP-KLNQLYAFS 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 62.7 bits (153), Expect = 1e-11
 Identities = 37/239 (15%), Positives = 72/239 (30%), Gaps = 66/239 (27%)

Query: 77  CSKLKTLPEISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPS-SLC 134
           C  ++ +P +    + + + L  T +  +PS +   L  +S +Y+     L+ L S S  
Sbjct: 20  CKDIQRIPSLPP--STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFY 77

Query: 135 KLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTS 194
            L  +  I +R   +L  +  +                                L  L  
Sbjct: 78  NLSKVTHIEIRNTRNLTYIDPDA----------------------------LKELPLLKF 109

Query: 195 LYLTDCGITELPEN----------------------------LGQLSLLLELYLEKNNFE 226
           L + + G+   P+                              G  +  L L L  N F 
Sbjct: 110 LGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169

Query: 227 RLPESIIHLSKLAYLKLSYCERLQSLP-----KLPCNLSELDAHHCTALESSPGLVFPS 280
            +     + +KL  + L+  + L  +       +    S LD    T++ + P      
Sbjct: 170 SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ-TSVTALPSKGLEH 227

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 30/211 (14%), Positives = 68/211 (32%), Gaps = 38/211 (18%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYL 97
           +L  +  + ++   +L+ L    F  L  +  +++     L  +    +     ++ + +
Sbjct: 53  NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 98  NGTAIEELP--SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN 155
             T ++  P  + +        L +     + S+P                 ++ + L N
Sbjct: 113 FNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPV----------------NAFQGLCN 156

Query: 156 ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC-GITELPENL--GQL 212
           E        +L         V         F+G   L ++YL     +T + ++   G  
Sbjct: 157 E------TLTLKLYNNGFTSVQ-----GYAFNGT-KLDAVYLNKNKYLTVIDKDAFGGVY 204

Query: 213 SLLLELYLEKNNFERLPESIIHLSKLAYLKL 243
           S    L + + +   LP     L  L  L  
Sbjct: 205 SGPSLLDVSQTSVTALPSKG--LEHLKELIA 233

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 27/170 (15%), Positives = 58/170 (34%), Gaps = 22/170 (12%)

Query: 146 WCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTD-CGITE 204
            C  ++ +P+   + + L         + E  L  +  + F  L N++ +Y++    + +
Sbjct: 19  TCKDIQRIPSLPPSTQTLK--------LIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQ 70

Query: 205 LPENL-GQLSLLLELYLEKNNFERL--PESIIHLSKLAYLKLSYCERLQSLPKLPC---- 257
           L  +    LS +  + +          P+++  L  L +L +     L+  P L      
Sbjct: 71  LESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPDLTKVYST 129

Query: 258 -NLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDA 306
                L+      + S P   F     +   L+    L  N    +   A
Sbjct: 130 DIFFILEITDNPYMTSIPVNAFQGLCNETLTLK----LYNNGFTSVQGYA 175

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.9 bits (156), Expect = 2e-11
 Identities = 52/264 (19%), Positives = 81/264 (30%), Gaps = 32/264 (12%)

Query: 45  LVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEE 104
             NL+L+      +     F    L+ LDL  C  ++T+                     
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIE-------------------- 68

Query: 105 LPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALN 164
              + + LS LS L L           +   L SL  +     +        +G+L+ L 
Sbjct: 69  -DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK 127

Query: 165 SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE----NLGQLSLL-LELY 219
            LN     I+   L       F  L NL  L L+   I  +       L Q+ LL L L 
Sbjct: 128 ELNVAHNLIQSFKLP----EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLD 183

Query: 220 LEKNNFERLPESIIHLSKLAYLKLSYCE-RLQSLPKLPCNLSELDAHHCTALESSPGLVF 278
           L  N    +        +L  L L      L  +      L+ L+ H     E       
Sbjct: 184 LSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 279 PSRDPQYFDLRNNLKLDRNEIREI 302
              D    +   NL ++   +  +
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYL 267

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 63.5 bits (155), Expect = 3e-11
 Identities = 46/227 (20%), Positives = 80/227 (35%), Gaps = 20/227 (8%)

Query: 26  ASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE 85
            S    +  + S   +     +L L NCK  +     +  L+ L         K      
Sbjct: 290 VSVTIERVKDFS---YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSN----KGGNAFS 342

Query: 86  ISSAGNIEVMYLNG---TAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSI 142
                ++E + L+    +       S    + L  L L     + ++ S+   L+ L  +
Sbjct: 343 EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHL 401

Query: 143 YLRWCS-SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG 201
             +  +    S  +   +L  L  L+   T  R     I     F+GL +L  L +    
Sbjct: 402 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-----FNGLSSLEVLKMAGNS 456

Query: 202 ITE--LPENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSY 245
             E  LP+   +L  L  L L +   E+L P +   LS L  L +S+
Sbjct: 457 FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 503

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 62.4 bits (152), Expect = 6e-11
 Identities = 52/280 (18%), Positives = 91/280 (32%), Gaps = 20/280 (7%)

Query: 26  ASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGC--SKLKT 82
             N        + +  L  L  L      +L  L       L+ LKEL++        K 
Sbjct: 84  TGNPIQSLALGAFS-GLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 83  LPEISSAGNIEVMYLNGTAIEEL-PSSIECLSGLSA----LYLDHCKRLKSLPSSLCKLK 137
               S+  N+E + L+   I+ +  + +  L  +      L L     +  +     K  
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEI 200

Query: 138 SLNSIYLRWCS-SLKSLPNELGNLEALNSLNAEGTAIR-EVPLSIVRLNNFDGLQNLTSL 195
            L+ + LR    SL  +   +  L  L          R E  L     +  +GL NLT  
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260

Query: 196 YLT----DCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQS 251
                  D  + ++ +    L+ +    L     ER+     +     +L+L  C+  Q 
Sbjct: 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQF 319

Query: 252 LPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN 291
                 +L  L         +   +  PS   ++ DL  N
Sbjct: 320 PTLKLKSLKRLTFTSNKGGNAFSEVDLPS--LEFLDLSRN 357

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 57.7 bits (140), Expect = 2e-09
 Identities = 45/300 (15%), Positives = 89/300 (29%), Gaps = 40/300 (13%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIF-RLEFLKELDLW-----GCSKL 80
            N               +L  L L N      +       L  L+   L          L
Sbjct: 186 LNPMNFIQ--PGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 81  KTLPE--ISSAGNIEVMYLNGTAIE----ELPSSIECLSGLSALYLDHCKRLKSLPSSLC 134
           +   +  +    N+ +       ++    ++     CL+ +S+  L      +    S  
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY- 302

Query: 135 KLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP----LSIVRLNN----- 185
                  + L  C   +    +L +L+ L   + +G           L  + L+      
Sbjct: 303 -NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361

Query: 186 -------FDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERL--PESIIHLS 236
                    G  +L  L L+  G+  +  N   L  L  L  + +N +++      + L 
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421

Query: 237 KLAYLKLSYCERLQSLPKLPC----NLSELDAHHCTALESSPGLVFPS-RDPQYFDLRNN 291
            L YL +S+    +           +L  L     +  E+    +F   R+  + DL   
Sbjct: 422 NLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 27/124 (21%), Positives = 49/124 (39%), Gaps = 5/124 (4%)

Query: 26  ASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLP 84
             +   +    S+ L L  L+ L++++    R+   GIF  L  L+ L + G S  +   
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFL 462

Query: 85  --EISSAGNIEVMYLNGTAIEEL-PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNS 141
               +   N+  + L+   +E+L P++   LS L  L + H             L SL  
Sbjct: 463 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV 522

Query: 142 IYLR 145
           +   
Sbjct: 523 LDYS 526

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 61.6 bits (150), Expect = 6e-11
 Identities = 47/220 (21%), Positives = 88/220 (40%), Gaps = 23/220 (10%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
           +L+ L+ L L + +   +    +  L  + EL+L G   LK +  I+   +I+ + L  T
Sbjct: 61  YLNNLIGLELKDNQITDL--APLKNLTKITELELSGN-PLKNVSAIAGLQSIKTLDLTST 117

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            I ++ + +  LS L  LYLD  + + ++ S L  L +L  + +     +  L   L NL
Sbjct: 118 QITDV-TPLAGLSNLQVLYLDLNQ-ITNI-SPLAGLTNLQYLSIGNAQ-VSDLTP-LANL 172

Query: 161 EALNSLNAEGTAIREVPL---------------SIVRLNNFDGLQNLTSLYLTDCGITEL 205
             L +L A+   I ++                  I  ++      NL  + LT+  IT  
Sbjct: 173 SKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITNQ 232

Query: 206 PENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245
           P       ++  +    +     P +I      A   L++
Sbjct: 233 PVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTW 272

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 22/112 (19%), Positives = 44/112 (39%), Gaps = 12/112 (10%)

Query: 157 LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLL 216
              L     + A  + + +             L  +T+L     G+T + E +  L+ L+
Sbjct: 15  DPALANAIKIAAGKSNVTDTV-------TQADLDGITTLSAFGTGVTTI-EGVQYLNNLI 66

Query: 217 ELYLEKNNFERLPESIIHLSKLAYLKLSYCE--RLQSLPKLPCNLSELDAHH 266
            L L+ N    L   + +L+K+  L+LS      + ++  L  ++  LD   
Sbjct: 67  GLELKDNQITDLAP-LKNLTKITELELSGNPLKNVSAIAGLQ-SIKTLDLTS 116

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.0 bits (146), Expect = 1e-10
 Identities = 36/183 (19%), Positives = 69/183 (37%), Gaps = 22/183 (12%)

Query: 66  LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKR 125
           L    + +L G   +  L        ++    + + I+ L + ++  + L  L+L H + 
Sbjct: 18  LANAVKQNL-GKQSVTDLVSQKELSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQ- 74

Query: 126 LKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLS---IVR 182
           +  L S L  L  L  + +          N L NL  + S       +  + L    +  
Sbjct: 75  ISDL-SPLKDLTKLEELSVNR--------NRLKNLNGIPSAC-----LSRLFLDNNELRD 120

Query: 183 LNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLK 242
            ++   L+NL  L + +  +  +   LG LS L  L L  N        +  L K+ ++ 
Sbjct: 121 TDSLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWID 178

Query: 243 LSY 245
           L+ 
Sbjct: 179 LTG 181

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 44/205 (21%), Positives = 76/205 (37%), Gaps = 18/205 (8%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            L  + N N +N     +   G+     LKEL L    ++  L  +     +E + +N  
Sbjct: 39  ELSGVQNFNGDNSNIQSL--AGMQFFTNLKELHLSHN-QISDLSPLKDLTKLEELSVNRN 95

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            ++ L + I     LS L+LD+ + L+    SL  LK+L  + +R    LKS+   LG L
Sbjct: 96  RLKNL-NGIPSAC-LSRLFLDNNE-LRDT-DSLIHLKNLEILSIRNNK-LKSIVM-LGFL 149

Query: 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP-ENLGQLSLLLELY 219
             L  L+  G  I               L+ +  + LT       P +   +L +   + 
Sbjct: 150 SKLEVLDLHGNEITN-------TGGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVK 202

Query: 220 LEKNNFERLPESIIHLSKLAYLKLS 244
                +   P  I +        + 
Sbjct: 203 DPDGRWIS-PYYISNGGSYVDGCVL 226

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 60.9 bits (147), Expect = 1e-10
 Identities = 46/247 (18%), Positives = 83/247 (33%), Gaps = 23/247 (9%)

Query: 31  TKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAG 90
               N    + L  L   +LN+              +  KE  L          + ++  
Sbjct: 290 PDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDE 349

Query: 91  NIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSI--YLRWCS 148
            +    L+      L S +E    L  L  ++   L ++   +  L  L      L++ S
Sbjct: 350 QLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFS 409

Query: 149 SLKSL-PNELGNLEALNSLNAEGTAIREVP-----------LSIVRLNNFDGLQNLTSLY 196
           +LK++ P     L+ L S      ++ ++              +  L + + L  +T L 
Sbjct: 410 TLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLD 469

Query: 197 LTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY--------CER 248
           L+   +  LP  L  L  L  L    N  E +   + +L +L  L L           + 
Sbjct: 470 LSHNRLRALPPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNRLQQSAAIQP 528

Query: 249 LQSLPKL 255
           L S P+L
Sbjct: 529 LVSCPRL 535

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.8 bits (118), Expect = 7e-07
 Identities = 33/204 (16%), Positives = 72/204 (35%), Gaps = 12/204 (5%)

Query: 13  VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKEL 72
           ++   +L+++                 L         L    +L+ + P    +      
Sbjct: 368 LESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP----MRAAYLD 423

Query: 73  DLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSS 132
           DL     L+         ++ V++L    +  L   +E L  ++ L L H  RL++LP +
Sbjct: 424 DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHN-RLRALPPA 481

Query: 133 LCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNL 192
           L  L+ L  +     ++L+++   + NL  L  L      +++       +        L
Sbjct: 482 LAALRCLEVLQAS-DNALENVDG-VANLPRLQELLLCNNRLQQSA----AIQPLVSCPRL 535

Query: 193 TSLYLTDCGITELPENLGQLSLLL 216
             L L    + +      +L+ +L
Sbjct: 536 VLLNLQGNSLCQEEGIQERLAEML 559

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 59.6 bits (145), Expect = 2e-10
 Identities = 46/189 (24%), Positives = 73/189 (38%), Gaps = 33/189 (17%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            L  L  L+L++   LR + P  F           G  +L TL            +L+  
Sbjct: 78  GLALLEQLDLSDNAQLRSVDPATFH----------GLGRLHTL------------HLDRC 115

Query: 101 AIEELPSSI-ECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNE-L 157
            ++EL   +   L+ L  LYL     L++LP  +   L +L  ++L   + + S+P    
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAF 173

Query: 158 GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLL 216
             L +L+ L      +  V         F  L  L +LYL    ++ LP   L  L  L 
Sbjct: 174 RGLHSLDRLLLHQNRVAHVHPHA-----FRDLGRLMTLYLFANNLSALPTEALAPLRALQ 228

Query: 217 ELYLEKNNF 225
            L L  N +
Sbjct: 229 YLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 56.2 bits (136), Expect = 3e-09
 Identities = 49/227 (21%), Positives = 80/227 (35%), Gaps = 50/227 (22%)

Query: 91  NIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCS 148
             + ++L+G  I  +P++       L+ L+L     L  + + +   L  L  + L   +
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSN-VLARIDAAAFTGLALLEQLDLSDNA 91

Query: 149 SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN 208
            L+S+                                F GL  L +L+L  CG+ EL   
Sbjct: 92  QLRSVDPAT----------------------------FHGLGRLHTLHLDRCGLQELGPG 123

Query: 209 -LGQLSLLLELYLEKNNFERLPESI-IHLSKLAYLKLSYCERLQSLP-----KLPCNLSE 261
               L+ L  LYL+ N  + LP+     L  L +L L    R+ S+P      L  +L  
Sbjct: 124 LFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLH-SLDR 181

Query: 262 LDAHHCTALESSPGLVFPSRDPQYFDLRN--NLKLDRNEIREILEDA 306
           L  H    +       F        DL     L L  N +  +  +A
Sbjct: 182 LLLHQN-RVAHVHPHAF-------RDLGRLMTLYLFANNLSALPTEA 220

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.5 bits (147), Expect = 2e-10
 Identities = 45/268 (16%), Positives = 91/268 (33%), Gaps = 37/268 (13%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPE 85
            N   +    S +  L  L  L +       ++    FR L  L  L L   ++   L  
Sbjct: 39  LNSIAELNETSFS-RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLET 96

Query: 86  --ISSAGNIEVMYLNGTAIEEL---PSSIECLSGLSALYLDHCKRLKSLP--SSLCKLKS 138
              +   N+EV+ L    ++      +  + L+ L  L L     +K +   S    ++ 
Sbjct: 97  GAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRR 155

Query: 139 LNSIYLRWCSSLKSLPNEL------GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNL 192
            + + L + + +KS+  E        +   L   +     + E  L   +  N     ++
Sbjct: 156 FHVLDLTF-NKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214

Query: 193 TSLYLTDCGITELPE----NLGQLSLLLELYLE----------KNNFERLPESI---IHL 235
           T+L L+  G  E       +    + +  L L             NF+         +  
Sbjct: 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEA 274

Query: 236 SKLAYLKLSYCERLQSLPK-LPCNLSEL 262
           S +    LS   ++ +L K +  + ++L
Sbjct: 275 SGVKTCDLSKS-KIFALLKSVFSHFTDL 301

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 47/251 (18%), Positives = 79/251 (31%), Gaps = 30/251 (11%)

Query: 15  HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDL 74
              K+K I       F       L L    L ++N       +   P  F+   +  LDL
Sbjct: 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP--FKNTSITTLDL 219

Query: 75  WG--------------CSKLKTLPEISSAGNIEVMYLNGTAIEELPSSI---ECLSGLSA 117
            G               +  K    I S           T  ++  +        SG+  
Sbjct: 220 SGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKT 279

Query: 118 LYLDHCKRLKSLPSSLCK-LKSLNSIYLRWCSSLKSLPNE-LGNLEALNSLNAEGTAIRE 175
             L    ++ +L  S+      L  + L   + +  + +     L  L  LN     +  
Sbjct: 280 CDLSK-SKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLGS 337

Query: 176 VPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNFERLPESII- 233
           +   +     F+ L  L  L L+   I  L +     L  L EL L+ N  + +P+ I  
Sbjct: 338 IDSRM-----FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFD 392

Query: 234 HLSKLAYLKLS 244
            L+ L  + L 
Sbjct: 393 RLTSLQKIWLH 403

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 38/224 (16%), Positives = 76/224 (33%), Gaps = 29/224 (12%)

Query: 23  ISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFR----LEFLKELDLW--- 75
           +   + ++              +  L+L+     +      F        ++ L L    
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSY 250

Query: 76  ------GCSKLKTLPEISSAG----NIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCK 124
                 G +  K     +  G     ++   L+ + I  L  S+    + L  L L    
Sbjct: 251 NMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-N 309

Query: 125 RLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNEL-GNLEALNSLNAEGTAIREVPLSIVR 182
            +  +   +   L  L  + L   + L S+ + +  NL+ L  L+     IR +      
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQS-- 366

Query: 183 LNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNF 225
              F GL NL  L L    +  +P+    +L+ L +++L  N +
Sbjct: 367 ---FLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 52.4 bits (126), Expect = 9e-08
 Identities = 41/282 (14%), Positives = 94/282 (33%), Gaps = 39/282 (13%)

Query: 45  LVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNGTA 101
           +  ++L+    +  L    F RL+ L+ L +   +    +         ++ ++ L+   
Sbjct: 32  VNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 102 IEELPSSI-ECLSGLSALYLDHCKRLKSL---PSSLCKLKSLNSIYLRWCSSLKSLPNE- 156
             +L +     L+ L  L L  C  L       +    L SL  + LR  +++K +    
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRD-NNIKKIQPAS 148

Query: 157 -LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQ--NLTSLYLTDCGITELPENLGQ-- 211
              N+   + L+     ++ +             Q  + T L L+   + ++ E      
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEED-----LLNFQGKHFTLLRLSSITLQDMNEYWLGWE 203

Query: 212 -------LSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDA 264
                   + +  L L  N F+             +       ++QSL  L  + +   +
Sbjct: 204 KCGNPFKNTSITTLDLSGNGFKESMAK-------RFFDAIAGTKIQSLI-LSNSYNMGSS 255

Query: 265 HHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILEDA 306
              T  +      F   +     ++    L +++I  +L+  
Sbjct: 256 FGHTNFKDPDNFTFKGLEAS--GVK-TCDLSKSKIFALLKSV 294

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 59.5 bits (144), Expect = 5e-10
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 17/214 (7%)

Query: 39  TLHLDKLVNLNLNNCKSLRILPPGIFR-LEFLKELDLWGCSKLKTLPEI--SSAGNIEVM 95
              L  L+  ++ N +        ++     +    L   S    +  +   S  +   +
Sbjct: 301 ETALKSLMIEHVKN-QVFLFSKEALYSVFAEMNIKMLSI-SDTPFIHMVCPPSPSSFTFL 358

Query: 96  YLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP 154
                   +        L  L  L L     LK+        K+++S+     S L SL 
Sbjct: 359 NFTQNVFTDSVFQGCSTLKRLQTLILQR-NGLKNFFKVALMTKNMSSLETLDVS-LNSLN 416

Query: 155 NELGNLEALNSLNAEGTAIREVPLSIVRLNN--FDGL-QNLTSLYLTDCGITELPENLGQ 211
           +      A +   A   +I  + LS   L    F  L   +  L L +  I  +P+++  
Sbjct: 417 SH-----AYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTH 471

Query: 212 LSLLLELYLEKNNFERLPESII-HLSKLAYLKLS 244
           L  L EL +  N  + +P+ +   L+ L Y+ L 
Sbjct: 472 LQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 38/267 (14%), Positives = 79/267 (29%), Gaps = 17/267 (6%)

Query: 2   PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPP 61
               +  L  S      +   I        + PN ++ LHL    N   +   ++ +   
Sbjct: 162 DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV-LHLVFHPNSLFSVQVNMSVNAL 220

Query: 62  GIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAI--EELPSSIECL--SGLSA 117
           G  +L  +K  D      +  L E++    +  + L       +      +      +  
Sbjct: 221 GHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280

Query: 118 LYLDHCK-----RLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA 172
           L + +         +    S   LKSL   +++    L S          +N      + 
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340

Query: 173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP-ENLGQLSLLLELYLEKNNFERLPES 231
              + +            + T L  T    T+   +    L  L  L L++N  +   + 
Sbjct: 341 TPFIHMVC-----PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKV 395

Query: 232 IIHLSKLAYLKLSYCERLQSLPKLPCN 258
            +    ++ L+      L SL     +
Sbjct: 396 ALMTKNMSSLETLDV-SLNSLNSHAYD 421

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 2e-09
 Identities = 36/222 (16%), Positives = 68/222 (30%), Gaps = 21/222 (9%)

Query: 33  SPNHSLTLHLDKLVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLKTLPE--ISSA 89
                    L  L    + +          I+     +   +    S  + +     S  
Sbjct: 266 RDFDYSGTSLKALSIHQVVS-DVFGFPQSYIYEIFSNMNIKNF-TVSGTRMVHMLCPSKI 323

Query: 90  GNIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLP---SSLCKLKSLNSIYLR 145
                +  +   + +        L+ L  L L   + LK L        ++KSL  + + 
Sbjct: 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDIS 382

Query: 146 WCSSLKSLPNEL-GNLEALNSLNAEGTAIREVPLSIVRLNNFDGL-QNLTSLYLTDCGIT 203
             S             ++L SLN     + +          F  L   +  L L    I 
Sbjct: 383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI--------FRCLPPRIKVLDLHSNKIK 434

Query: 204 ELPENLGQLSLLLELYLEKNNFERLPESIIH-LSKLAYLKLS 244
            +P+ + +L  L EL +  N  + +P+ I   L+ L  + L 
Sbjct: 435 SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLH 476

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 30/207 (14%), Positives = 57/207 (27%), Gaps = 10/207 (4%)

Query: 91  NIEVMYLNGTAIEELPSS-IECLSGLSALYLDHCKRLKSLPSSLC-KLKSLNSIYLRWCS 148
              ++ ++   I EL +S I  LS L  L + H + ++ L  S+    + L  + L   +
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLS-HN 79

Query: 149 SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN 208
            L  +         L  L+    A   +P+       F  +  L  L L+   + +    
Sbjct: 80  KLVKIS--CHPTVNLKHLDLSFNAFDALPICKE----FGNMSQLKFLGLSTTHLEKSSVL 133

Query: 209 LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCT 268
                 + ++ L         E    L       L              ++S     +  
Sbjct: 134 PIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLE 193

Query: 269 ALESSPGLVFPSRDPQYFDLRNNLKLD 295
                  L           L       
Sbjct: 194 LSNIKCVLEDNKCSYFLSILAKLQTNP 220

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 6e-06
 Identities = 34/166 (20%), Positives = 66/166 (39%), Gaps = 17/166 (10%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLKTLPEISSA----GNIEVM 95
            +   ++L+ +N   L          L  L+ L L   ++LK L +I+       +++ +
Sbjct: 322 KISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQM-NQLKELSKIAEMTTQMKSLQQL 379

Query: 96  YLNGTAIEELPSSIEC--LSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSL 153
            ++  ++       +C     L +L +     L       C    +  + L     +KS+
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFR-CLPPRIKVLDLHSNK-IKSI 436

Query: 154 PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTD 199
           P ++  LEAL  LN     ++ VP  I     FD L +L  ++L  
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGI-----FDRLTSLQKIWLHT 477

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.7 bits (103), Expect = 5e-05
 Identities = 45/318 (14%), Positives = 93/318 (29%), Gaps = 48/318 (15%)

Query: 21  QIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80
           + +  + N F   P      ++ +L  L L+     +     I  L   K L + G +  
Sbjct: 93  KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYG 152

Query: 81  --------------------------KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSG 114
                                       + ++S      +   N   + E       LS 
Sbjct: 153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSI 212

Query: 115 LSALYLDHCKRLKSLPSSLCKLKSLNSIY-LRWCSSLKSL---PNELGNLEALNSLNAEG 170
           L+ L  +      +L +      S   I  L W +++        +L         +  G
Sbjct: 213 LAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSG 272

Query: 171 TAIREVPLSIVRLNN--------FDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLE 221
           T+++ + +  V  +         ++   N+     T  G   +      ++S  L L   
Sbjct: 273 TSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFS 332

Query: 222 KNNFERLPESIIH-LSKLAYLKLSYCERLQSLPKLPC------NLSELDAHHCTALESSP 274
            N            L++L  L L    +L+ L K+        +L +LD    +      
Sbjct: 333 NNLLTDTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSYDEK 391

Query: 275 GLVFPS-RDPQYFDLRNN 291
                  +     ++ +N
Sbjct: 392 KGDCSWTKSLLSLNMSSN 409

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.8 bits (136), Expect = 4e-09
 Identities = 64/409 (15%), Positives = 123/409 (30%), Gaps = 114/409 (27%)

Query: 2   PHGNIQQLWD-SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP 60
           P   ++ L     Q +         +SN   K   HS+   L +L+         L +L 
Sbjct: 195 PETVLEMLQKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLLKSK-PYENCLLVLL 251

Query: 61  PGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM-YLNGTAIEELPSSIECLSGLS--- 116
             +   +     +L  C   K L  +++    +V  +L+      + S       L+   
Sbjct: 252 -NVQNAKAWNAFNL-SC---KIL--LTTR-FKQVTDFLSAATTTHI-SLDHHSMTLTPDE 302

Query: 117 -----ALYLDHCKRLKSLPSSLCK------------LKSLNSIYLRWC------------ 147
                  YLD   R + LP  +              ++   + +  W             
Sbjct: 303 VKSLLLKYLDC--RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 148 SSLKSL-PNELGNL-EALNSLNAEGTAIREVPLSIV-------------------RLNNF 186
           SSL  L P E   + + L+        I  + LS++                    L   
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419

Query: 187 DGLQNLTSLYLTDCGITELPENLGQL-SLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245
              ++  S+      +    EN   L   +++ Y     F+       +L +  Y  + +
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 246 -------CERLQSLPKLPCNLSELDA---HHCTALESSPGLV------------FPSRDP 283
                   ER+     +  +   L+    H  TA  +S  ++                DP
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP 539

Query: 284 QY----FDLRNNL-KLDRNEIR----------------EILEDAQQEIQ 311
           +Y      + + L K++ N I                  I E+A +++Q
Sbjct: 540 KYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQVQ 588

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 51.8 bits (124), Expect = 9e-08
 Identities = 44/221 (19%), Positives = 73/221 (33%), Gaps = 22/221 (9%)

Query: 40  LHLDKLVNLNLNNCKSLRILPPGIFRLEF--LKELDLWGCSKLKTLPEISSAGN-----I 92
           L +  L  L L N +     PP +       L  L+L   S       ++         +
Sbjct: 92  LGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGL 151

Query: 93  EVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRL--KSLPSSLC-----KLKSLNSIYL 144
           +V+ +            +     LS L L     L  + L S+LC      L+ L     
Sbjct: 152 KVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA 211

Query: 145 RWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE 204
              +              L  L+    ++R+   +     + D    L SL L+  G+ +
Sbjct: 212 GMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP----SCDWPSQLNSLNLSFTGLKQ 267

Query: 205 LPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY 245
           +P+ L     L  L L  N  +R P S   L ++  L L  
Sbjct: 268 VPKGLPA--KLSVLDLSYNRLDRNP-SPDELPQVGNLSLKG 305

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 1e-07
 Identities = 35/172 (20%), Positives = 67/172 (38%), Gaps = 12/172 (6%)

Query: 95  MYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP 154
           ++     IE++ +++  L     L L     ++ + SSL  +++L  + L   + +K + 
Sbjct: 30  LHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKI-SSLSGMENLRILSL-GRNLIKKIE 86

Query: 155 NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE--NLGQL 212
           N     + L  L      I         L+  + L NL  LY+++  IT   E   L  L
Sbjct: 87  NLDAVADTLEELWISYNQIA-------SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAAL 139

Query: 213 SLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDA 264
             L +L L  N      +     S+     +     L+ L  +P ++ E + 
Sbjct: 140 DKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGMPVDVDEREQ 191

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 186 FDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPESII-HLSKLAYLKL 243
           F  L  L  +  ++  IT++ E      S + E+ L  N  E +   +   L  L  L L
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112

Query: 244 SYCERLQSLPK 254
               R+  +  
Sbjct: 113 RSN-RITCVGN 122

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 27/158 (17%), Positives = 52/158 (32%), Gaps = 35/158 (22%)

Query: 91  NIEVMYLNGTAIEELPSS--IECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWC 147
               + LN      L ++   + L  L  +   + K +  +   +      +N I L   
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLT-S 90

Query: 148 SSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE 207
           + L+++ +++                            F GL++L +L L    IT +  
Sbjct: 91  NRLENVQHKM----------------------------FKGLESLKTLMLRSNRITCVGN 122

Query: 208 NL-GQLSLLLELYLEKNNFERLPESI-IHLSKLAYLKL 243
           +    LS +  L L  N    +       L  L+ L L
Sbjct: 123 DSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNL 160

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 12/134 (8%)

Query: 124 KRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP-NELGNLEALNSLNAEGTAIREVPLSIVR 182
           K L  +P++L   +++  I L   +++K +P       + L  ++     I E+      
Sbjct: 21  KGLTEIPTNL--PETITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA-- 75

Query: 183 LNNFDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNFERLPESII-HLSKLAY 240
              F GL++L SL L    ITELP++L   L  L  L L  N    L       L  L  
Sbjct: 76  ---FQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132

Query: 241 LKLSYCERLQSLPK 254
           L L    +LQ++ K
Sbjct: 133 LSLYD-NKLQTIAK 145

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 32/157 (20%), Positives = 50/157 (31%), Gaps = 34/157 (21%)

Query: 91  NIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLC-KLKSLNSIYLRWCS 148
            I  + L    I+ +P         L  + L + + +  L       L+SLNS+ L    
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGNK 91

Query: 149 SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN 208
            +  LP  L                            F+GL +L  L L    I  L  +
Sbjct: 92  -ITELPKSL----------------------------FEGLFSLQLLLLNANKINCLRVD 122

Query: 209 LGQ-LSLLLELYLEKNNFERLPESII-HLSKLAYLKL 243
             Q L  L  L L  N  + + +     L  +  + L
Sbjct: 123 AFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 37/164 (22%), Positives = 67/164 (40%), Gaps = 23/164 (14%)

Query: 52  NC--KSLRILPPGIFRLEFLKELDLWGCSKLKTLPEI--SSAGNIEVMYLNGTAIEELPS 107
           +C  K L  +P  +   E + E+ L   + +K +P    S    +  + L+   I EL  
Sbjct: 17  DCRGKGLTEIPTNLP--ETITEIRLEQ-NTIKVIPPGAFSPYKKLRRIDLSNNQISELAP 73

Query: 108 SI-ECLSGLSALYLDHCKRLKSLPSSL-CKLKSLNSIYLRWCSSLKSLPNEL-GNLEALN 164
              + L  L++L L   K +  LP SL   L SL  + L   + +  L  +   +L  LN
Sbjct: 74  DAFQGLRSLNSLVLYGNK-ITELPKSLFEGLFSLQLLLLN-ANKINCLRVDAFQDLHNLN 131

Query: 165 SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT------DCGI 202
            L+     ++ +         F  L+ + +++L       DC +
Sbjct: 132 LLSLYDNKLQTIAKGT-----FSPLRAIQTMHLAQNPFICDCHL 170

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 5e-07
 Identities = 23/107 (21%), Positives = 34/107 (31%), Gaps = 8/107 (7%)

Query: 122 HC--KRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNE-LGNLEALNSLNAEGTAIREVPL 178
            C           L   ++L  +Y+     L+ L    L  L  L +L    + +R V  
Sbjct: 14  RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAP 73

Query: 179 SIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNF 225
                  F     L+ L L+   +  L     Q   L EL L  N  
Sbjct: 74  DA-----FHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 25/109 (22%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 190 QNLTSLYLTDCGITELPENLGQLSLLLELYLEKNN-FERLP-ESIIHLSKLAYLKLSYCE 247
              + L  T  G  +   +L     L ELY+E     + L    +  L +L  L +    
Sbjct: 8   HGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS- 66

Query: 248 RLQSLPK-----LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN 291
            L+ +        P  LS L+     ALES           Q   L  N
Sbjct: 67  GLRFVAPDAFHFTP-RLSRLNLSFN-ALESLSWKTVQGLSLQELVLSGN 113

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.9 bits (117), Expect = 8e-07
 Identities = 35/147 (23%), Positives = 63/147 (42%), Gaps = 22/147 (14%)

Query: 124 KRLKSLPSSL-CKLKSLNSIYLRWCSSLKSLP--NELGNLEALNSLNAEGTAIREVP--- 177
              +  P     +    N        S+      NEL +++ + + N++  +++ +    
Sbjct: 8   PIKQIFPDDAFAETIKANLKK----KSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLP 63

Query: 178 -LSIVRLNN--------FDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNFER 227
            +  + L             L NLT L LT   +  LP  +  +L+ L EL L +N  + 
Sbjct: 64  NVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS 123

Query: 228 LPESII-HLSKLAYLKLSYCERLQSLP 253
           LP+ +   L+ L YL L++  +LQSLP
Sbjct: 124 LPDGVFDKLTNLTYLNLAH-NQLQSLP 149

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 36/190 (18%)

Query: 27  SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCSKLKTLPE 85
           ++            ++  L  L  N    +          L  L  L L G ++L++LP 
Sbjct: 50  NSDIKSVQGIQYLPNVRYL-ALGGNKLHDI-----SALKELTNLTYLILTG-NQLQSLPN 102

Query: 86  --ISSAGNIEVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPS----SLCKLKS 138
                  N++ + L    ++ LP  + + L+ L+ L L    +L+SLP      L  L  
Sbjct: 103 GVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL-AHNQLQSLPKGVFDKLTNLTE 161

Query: 139 LNSIYLRWCSSLKSLPN----ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTS 194
           L    L   + L+SLP     +L  L+ L     +   ++ VP  +     FD L +L  
Sbjct: 162 L---DL-SYNQLQSLPEGVFDKLTQLKDLRLYQNQ---LKSVPDGV-----FDRLTSLQY 209

Query: 195 LYLT----DC 200
           ++L     DC
Sbjct: 210 IWLHDNPWDC 219

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 49/261 (18%), Positives = 78/261 (29%), Gaps = 25/261 (9%)

Query: 36  HSLTLHLDKLVNLNLNNCK-SLRILPPGIFRLEFLKELDLWGCSKL--KTLPEISSAG-N 91
            +++     L  + L     +   L       +  K L L  C       L  I++   N
Sbjct: 98  EAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRN 157

Query: 92  IEVMYLNGTAIEE-----LPSSIECLSGLSALYLDHCKR------LKSLPSSLCKLKSLN 140
           ++ + L  + +++     L    +  + L +L +           L+ L +    LKSL 
Sbjct: 158 LKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLK 217

Query: 141 SIYLRWCSSLKSLPNELGNLEALNSLNAEG-TAIREVPLSIVRLNNFDGLQNLTSL-YLT 198
              L     L+ L   L     L  L   G TA     +         G + L  L    
Sbjct: 218 ---LNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFW 274

Query: 199 DCGITELPENLGQLSLLLELYLEKNNF--ERLPESIIHLSKLAYLKLSYC---ERLQSLP 253
           D     LP      S L  L L         L + +    KL  L +        L+ L 
Sbjct: 275 DAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLA 334

Query: 254 KLPCNLSELDAHHCTALESSP 274
               +L EL           P
Sbjct: 335 STCKDLRELRVFPSEPFVMEP 355

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 44/264 (16%), Positives = 79/264 (29%), Gaps = 35/264 (13%)

Query: 37  SLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNI---- 92
            L      L +L LN    L  L   + R   L+EL   G +        S         
Sbjct: 205 RLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGC 264

Query: 93  -EVMYLNGTAI---EELPSSIECLSGLSALYLDHCKRL-KSLPSSLCKLKSLNSIYLRWC 147
            E+  L+G        LP+     S L+ L L +       L   LC+   L  +++   
Sbjct: 265 KELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY 324

Query: 148 ---SSLKSLPNELGNLEALNSLNAEGTAIREVPL----SIVRLNNFDGLQNLTSL----- 195
              + L+ L +   +L  L    +E   +          +V +    G   L S+     
Sbjct: 325 IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSV--SMGCPKLESVLYFCR 382

Query: 196 YLTDCGITELPENLGQL-----SLLLELYLEKNNFERLPESIIHL----SKLAYLKLSYC 246
            +T+  +  +  N   +      ++     +    E L      +      L  L LS  
Sbjct: 383 QMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL 442

Query: 247 ---ERLQSLPKLPCNLSELDAHHC 267
              +  + +      +  L     
Sbjct: 443 LTDKVFEYIGTYAKKMEMLSVAFA 466

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 42/166 (25%), Positives = 66/166 (39%), Gaps = 35/166 (21%)

Query: 93  EVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSL-CKLKSLNSIYLRWCSSL 150
           E + L  T +  L  +    L+ L+ L LD+  +L++L + +   L  L ++ L   + L
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDY-NQLQTLSAGVFDDLTELGTLGLAN-NQL 95

Query: 151 KSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL- 209
            SLP  +                            FD L  L  LYL    +  LP  + 
Sbjct: 96  ASLPLGV----------------------------FDHLTQLDKLYLGGNQLKSLPSGVF 127

Query: 210 GQLSLLLELYLEKNNFERLPESII-HLSKLAYLKLSYCERLQSLPK 254
            +L+ L EL L  N  + +P      L+ L  L L    +LQS+P 
Sbjct: 128 DRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSL-STNQLQSVPH 172

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 39.7 bits (93), Expect = 7e-04
 Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 18/182 (9%)

Query: 52  NC--KSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAG--NIEVMYLNGTAIEELPS 107
           +C  KSL  +P GI      ++LDL   + L TL + +  G   +  + L+   ++ L +
Sbjct: 20  DCQGKSLDSVPSGIPADT--EKLDLQS-TGLATLSDATFRGLTKLTWLNLDYNQLQTLSA 76

Query: 108 SI-ECLSGLSALYLDHCKRLKSLPSSL-CKLKSLNSIYLRWCSSLKSLPNEL-GNLEALN 164
            + + L+ L  L L +  +L SLP  +   L  L+ +YL   + LKSLP+ +   L  L 
Sbjct: 77  GVFDDLTELGTLGLAN-NQLASLPLGVFDHLTQLDKLYL-GGNQLKSLPSGVFDRLTKLK 134

Query: 165 SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKN 223
            L      ++ +P        FD L NL +L L+   +  +P     +L  L  + L  N
Sbjct: 135 ELRLNTNQLQSIPAGA-----FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

Query: 224 NF 225
            F
Sbjct: 190 QF 191

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 9/134 (6%)

Query: 122 HCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIV 181
             KR  S+P+ +    +   +YL      K  P    +L  L  L      +  +P+ + 
Sbjct: 27  RSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV- 83

Query: 182 RLNNFDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNFERLPESIIHLSKLAY 240
               FD L  LT L L    +T LP  +  +L  L EL++  N    LP  I  L+ L +
Sbjct: 84  ----FDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTH 139

Query: 241 LKLSYCERLQSLPK 254
           L L   + L+S+P 
Sbjct: 140 LALDQNQ-LKSIPH 152

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 43/162 (26%), Positives = 67/162 (41%), Gaps = 26/162 (16%)

Query: 52  NC--KSLRILPPGIFRLEFLKELDLWGCSKLKTLPE--ISSAGNIEVMYLNGTAIEELPS 107
           +C  K    +P GI      + L L   +++  L      S  N++ +YL    +  LP 
Sbjct: 25  DCRSKRHASVPAGI--PTNAQILYLHD-NQITKLEPGVFDSLINLKELYLGSNQLGALPV 81

Query: 108 SI-ECLSGLSALYLDHCKRLKSLPS----SLCKLKSLNSIYLRWCSSLKSLPNELGNLEA 162
            + + L+ L+ L L    +L  LPS     L  LK L   ++  C+ L  LP  +  L  
Sbjct: 82  GVFDSLTQLTVLDL-GTNQLTVLPSAVFDRLVHLKEL---FM-CCNKLTELPRGIERLTH 136

Query: 163 LNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT----DC 200
           L  L  +   ++ +P        FD L +LT  YL     DC
Sbjct: 137 LTHLALDQNQLKSIPHGA-----FDRLSSLTHAYLFGNPWDC 173

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 40.1 bits (94), Expect = 4e-04
 Identities = 37/154 (24%), Positives = 63/154 (40%), Gaps = 33/154 (21%)

Query: 93  EVMYLNGTAIEELPSSI-ECLSGLSALYLDHCKRLKSLPSSLC-KLKSLNSIYLRWCSSL 150
           +++YL+   I +L   + + L  L  LYL    +L +LP  +   L  L  + L   + L
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGS-NQLGALPVGVFDSLTQLTVLDLG-TNQL 100

Query: 151 KSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLG 210
             LP+ +                            FD L +L  L++    +TELP  + 
Sbjct: 101 TVLPSAV----------------------------FDRLVHLKELFMCCNKLTELPRGIE 132

Query: 211 QLSLLLELYLEKNNFERLPESII-HLSKLAYLKL 243
           +L+ L  L L++N  + +P      LS L +  L
Sbjct: 133 RLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYL 166

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 32/135 (23%), Positives = 59/135 (43%), Gaps = 10/135 (7%)

Query: 122 HCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIV 181
           + +   S+P+ +        + L   S           L +L  L   G  ++ +P  + 
Sbjct: 15  YSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV- 71

Query: 182 RLNNFDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNFERLPESII-HLSKLA 239
               F+ L +LT L L+   +  LP  +  +L+ L EL L  N  + LP+ +   L++L 
Sbjct: 72  ----FNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLK 127

Query: 240 YLKLSYCERLQSLPK 254
            L+L    +L+S+P 
Sbjct: 128 DLRLYQ-NQLKSVPD 141

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 9e-05
 Identities = 42/265 (15%), Positives = 82/265 (30%), Gaps = 31/265 (11%)

Query: 35  NHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL--KTLPEISS-AGN 91
                     L      +      +P     L F ++L   G S +    +P +   A  
Sbjct: 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294

Query: 92  IEVMYLNGTAI--EELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS 149
           I  + L    +  E+  + I+    L  L   +    + L       K L  + +   + 
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354

Query: 150 LKSLPNELGNL--EALNSLNAEGTAIREVPLSIVRLNNF------DGLQNLTSLYLTDC- 200
            + + +E G +    L +L      +  + + +  + N         L+NL    L    
Sbjct: 355 EQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLD 414

Query: 201 ---GITELPENLGQLSL------LLELYLEKNNFERLPESIIHLSK----LAYLKLSYCE 247
               IT+LP + G  SL      L                + ++ +    + ++ L Y  
Sbjct: 415 REERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG 474

Query: 248 R----LQSLPKLPCNLSELDAHHCT 268
                L    +   NL +L+   C 
Sbjct: 475 ESDEGLMEFSRGCPNLQKLEMRGCC 499

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 39/259 (15%), Positives = 73/259 (28%), Gaps = 41/259 (15%)

Query: 47  NLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELP 106
           ++ +  C +         R   L+ L L G  +   +  +        +    T I    
Sbjct: 54  HVTMALCYTA-TPDRLSRRFPNLRSLKLKGKPRA-AMFNLIPENWGGYVTPWVTEISNNL 111

Query: 107 SSIECL---------SGLSALYLDHCKRLKSLPSSLCK-------------LKSLNSIYL 144
             ++ +           L  L       L++L    C               + + ++ +
Sbjct: 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLM 171

Query: 145 RWCS-------SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYL 197
              S        L  L     +LE LN    E   I    L  +        ++L S+ +
Sbjct: 172 EESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETI----ARNCRSLVSVKV 227

Query: 198 TDCGITELPENLGQLSLLLELYLEKNNFER-LPESIIHLSKLAYLKLSYC-----ERLQS 251
            D  I EL       + L E      N +  +PE  ++L     L            +  
Sbjct: 228 GDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI 287

Query: 252 LPKLPCNLSELDAHHCTAL 270
           L      + +LD  +    
Sbjct: 288 LFPFAAQIRKLDLLYALLE 306

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 37/267 (13%), Positives = 84/267 (31%), Gaps = 45/267 (16%)

Query: 37  SLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE----ISSAG-- 90
           +L      L  L   N    R L       + LK L +   +  + + +    +S  G  
Sbjct: 312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLI 371

Query: 91  -------NIEVMYLNGT-----AIEELPSSIECLSGLSALYLDHCKRLKSLP------SS 132
                   +E M +  +     ++E + + ++ L     + LD  +R+  LP      S 
Sbjct: 372 ALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL 431

Query: 133 LCKLKSLNSIYLRWCS------SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNF 186
           L   K L                L  +     N+  +       +        ++     
Sbjct: 432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDE-----GLMEF--S 484

Query: 187 DGLQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERLPESIIHLS----KLAY 240
            G  NL  L +  C  +E  +   + +L  L  L+++        + ++ ++     +  
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544

Query: 241 LKLSYCERL--QSLPKLPCNLSELDAH 265
           +       +  Q   +   + + + A+
Sbjct: 545 IPSRRVPEVNQQGEIREMEHPAHILAY 571

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 42/253 (16%), Positives = 70/253 (27%), Gaps = 32/253 (12%)

Query: 41  HLDKLVNLNLNNCKSL--RILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLN 98
             D L  L L+ C       L   +     +K L +   S  +                +
Sbjct: 136 RADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSE---------------KD 180

Query: 99  GTAIEELPSSIECLSGLSALYLDHCKRL--KSLPSSLCKLKSLNSIYLRWCS--SLKSLP 154
           G  + EL      L  L+  Y+    ++  K L +     +SL S+ +       L    
Sbjct: 181 GKWLHELAQHNTSLEVLN-FYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF 239

Query: 155 NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSL 214
               NLE     +     + E      +  N    + L  L L+  G  E+P      + 
Sbjct: 240 KAAANLEEFCGGS-----LNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQ 294

Query: 215 LLELYLEKNNF--ERLPESIIHLSKLAYLKLSYC---ERLQSLPKLPCNLSELDAHHCTA 269
           + +L L       E     I     L  L+         L+ L +    L  L       
Sbjct: 295 IRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGAD 354

Query: 270 LESSPGLVFPSRD 282
            +           
Sbjct: 355 EQGMEDEEGLVSQ 367

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 16/116 (13%)

Query: 131 SSLCKLKSLNSIYLRWC--SSLKSLPNELGNLEALN-SLNAEGTAIREVPLSIVRLNNFD 187
           +          + LR      +++L   L   +A++ S N            I +L+ F 
Sbjct: 13  AQYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDN-----------EIRKLDGFP 61

Query: 188 GLQNLTSLYLTDCGITELPENLGQ-LSLLLELYLEKNNFERLPESIIHLSKLAYLK 242
            L+ L +L + +  I  + E L Q L  L EL L  N+   L   +  L+ L  L 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL-GDLDPLASLKSLT 116

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.6 bits (100), Expect = 1e-04
 Identities = 48/240 (20%), Positives = 80/240 (33%), Gaps = 32/240 (13%)

Query: 52  NCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNGTAIEE--LPS 107
           +     + P    RL     +           P  E  S   ++ M L+ + IE   L  
Sbjct: 53  DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHG 112

Query: 108 SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCS-----SLKSLPNELGNLEA 162
            +   S L  L L+  +    + ++L K  +L  + L  CS     +L++L +    L+ 
Sbjct: 113 ILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE 172

Query: 163 LN-----SLNAEG--TAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLL 215
           LN         +    A+  V  +I +LN    L       L    ++ L      L   
Sbjct: 173 LNLSWCFDFTEKHVQVAVAHVSETITQLN----LSGYRKN-LQKSDLSTLVRRCPNLV-- 225

Query: 216 LELYLEKNNF--ERLPESIIHLSKLAYLKLSYCER-----LQSLPKLPCNLSELDAHHCT 268
             L L  +        +    L+ L +L LS C       L  L ++P  L  L      
Sbjct: 226 -HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIP-TLKTLQVFGIV 283

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 39.9 bits (93), Expect = 8e-04
 Identities = 42/241 (17%), Positives = 74/241 (30%), Gaps = 49/241 (20%)

Query: 36  HSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVM 95
           H +     KL NL+L   +    +   + +   L  L+L GCS                 
Sbjct: 111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE------------- 157

Query: 96  YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN 155
                A++ L   +   S L  L L  C             K +         ++  L  
Sbjct: 158 ----FALQTL---LSSCSRLDELNLSWCFDFTE--------KHVQVAVAHVSETITQL-- 200

Query: 156 ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC-GIT-ELPENLGQLS 213
                    +L+     +++  LS +         NL  L L+D   +  +  +   QL+
Sbjct: 201 ---------NLSGYRKNLQKSDLSTL----VRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 247

Query: 214 LLLELYLEKNNF--ERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAH--HCTA 269
            L  L L +           +  +  L  L++       +L  L   L  L  +  H T 
Sbjct: 248 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQINCSHFTT 307

Query: 270 L 270
           +
Sbjct: 308 I 308

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 193 TSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESII-HLSKLAYLKLSYCERLQS 251
           T LYL     T +P+ L     L  + L  N    L      ++++L  L LSY  RL+ 
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY-NRLRC 92

Query: 252 LPK 254
           +P 
Sbjct: 93  IPP 95

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 5e-04
 Identities = 25/71 (35%), Positives = 38/71 (53%), Gaps = 3/71 (4%)

Query: 186 FDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNFERLPESII-HLSKLAYLKL 243
           FD L  LT L L+   I  LP+ +  +L+ L  LYL +N  + LP  +   L++L  L L
Sbjct: 48  FDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107

Query: 244 SYCERLQSLPK 254
               +L+S+P 
Sbjct: 108 DT-NQLKSVPD 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	329
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.97
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.96
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.96
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.96
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.96
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.95
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.94
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.94
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.93
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.91
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.9
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.89
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.85
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.83
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.8
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.8
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.73
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.73
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.7
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.66
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.6
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.59
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.56
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.49
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.47
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.46
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.45
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.43
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.26
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.24
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.24
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.22
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.1
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.01
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.94
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.93
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.82
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.81
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.74
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.69
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.52
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.43
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.39
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.94
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.81
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.14
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.46
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.29

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=1.4e-30  Score=236.24  Aligned_cols=291  Identities=19%  Similarity=0.160  Sum_probs=190.1

Q ss_pred             CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      |++++++.+ +..+..+++|++|++++|......+.. .+.++++|++|++++|.+....|..+.++++|++|++++|.+
T Consensus        37 Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l  115 (455)
T 3v47_A           37 LSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNN-TFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNL  115 (455)
T ss_dssp             CCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTT-TTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ecCCccCcCChhHhccCccccEEECcCCcccceECcc-cccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCC
Confidence            456666665 455667777777777776643333321 566677777777777766666666667777777777777665


Q ss_pred             CCCCcc---cCCCCCccEEEecCcccccc-chh-hhcCCCCCEEEcCCCCCcccCCccccCC------------------
Q 020238           80 LKTLPE---ISSAGNIEVMYLNGTAIEEL-PSS-IECLSGLSALYLDHCKRLKSLPSSLCKL------------------  136 (329)
Q Consensus        80 ~~~~~~---~~~~~~L~~L~l~~~~i~~~-~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l------------------  136 (329)
                      .+..+.   +..+++|++|++++|.+..+ |.. +..+++|++|++++|.+....+..+..+                  
T Consensus       116 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~  195 (455)
T 3v47_A          116 DGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDM  195 (455)
T ss_dssp             BTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTC
T ss_pred             CccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCccccc
Confidence            543221   45557777777777776644 333 5667777777777766544444333222                  


Q ss_pred             ----------------CCCcEEeccCCCCCCCCCcc-------------------------------------cC--CCc
Q 020238          137 ----------------KSLNSIYLRWCSSLKSLPNE-------------------------------------LG--NLE  161 (329)
Q Consensus       137 ----------------~~L~~L~l~~~~~~~~~~~~-------------------------------------~~--~l~  161 (329)
                                      ++|++|++++|...+..+..                                     +.  ..+
T Consensus       196 ~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (455)
T 3v47_A          196 NEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEAS  275 (455)
T ss_dssp             STTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTS
T ss_pred             chhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccccccccccc
Confidence                            34555555554332211110                                     00  113


Q ss_pred             cCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccC-ChhhhcCCccc
Q 020238          162 ALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERL-PESIIHLSKLA  239 (329)
Q Consensus       162 ~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~  239 (329)
                      +|+.+++++|.+...+...     +..+++|++|++++|.++++ +..+..+++|+.|++++|.++.+ +..+..+++|+
T Consensus       276 ~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  350 (455)
T 3v47_A          276 GVKTCDLSKSKIFALLKSV-----FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLE  350 (455)
T ss_dssp             CCCEEECCSSCCCEECTTT-----TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCC
T ss_pred             CceEEEecCccccccchhh-----cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCC
Confidence            5566666666555443333     56788999999999999985 55788899999999999999866 56788899999


Q ss_pred             eecccccccccccC---CCCCCccEEeccCCCCCcCCCC-CCCCCCCCcEEEcCCCcccchhH
Q 020238          240 YLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPG-LVFPSRDPQYFDLRNNLKLDRNE  298 (329)
Q Consensus       240 ~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~i~~~~~l~~~~  298 (329)
                      +|++++|......|   ..+++|++|++++|.. +.++. .+..+++|++|++++|+--.+..
T Consensus       351 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          351 VLDLSYNHIRALGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCC-SCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EEECCCCcccccChhhccccccccEEECCCCcc-ccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999987544434   3457999999999874 44554 44678899999999997766554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=1.3e-30  Score=250.67  Aligned_cols=136  Identities=22%  Similarity=0.306  Sum_probs=61.0

Q ss_pred             ccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCcccc-ccchhhhcCCCCC
Q 020238           39 TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLSGLS  116 (329)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~  116 (329)
                      +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+. .+|..+..+++|+
T Consensus       414 l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~  493 (768)
T 3rgz_A          414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLN  493 (768)
T ss_dssp             GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCC
T ss_pred             HhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCC
Confidence            3334444444444443333334444444444444444444333333 2233344444444444444 3344444444455


Q ss_pred             EEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccc
Q 020238          117 ALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR  174 (329)
Q Consensus       117 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  174 (329)
                      +|++++|.+...+|..+..+++|++|++++|...+.+|..+..+++|+.|++++|.+.
T Consensus       494 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  551 (768)
T 3rgz_A          494 WISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN  551 (768)
T ss_dssp             EEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred             EEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence            5555444444444444444445555555544444444444444555555555554443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=1.5e-30  Score=244.96  Aligned_cols=279  Identities=15%  Similarity=0.169  Sum_probs=180.5

Q ss_pred             hhhhcc--CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCC-CCc-ccCccccCC------CcccEEeecCCC
Q 020238            9 LWDSVQ--HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCK-SLR-ILPPGIFRL------EFLKELDLWGCS   78 (329)
Q Consensus         9 l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~   78 (329)
                      +|..+.  .+++|++|++++|......|.  .+.++++|++|++++|. +.+ .+|..+..+      ++|++|++++|.
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~  316 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPT--FLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN  316 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCT--TTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChH--HHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc
Confidence            888888  889999999998886666665  67778888888888876 544 455444433      555555555554


Q ss_pred             CCCCCcc---cCCCCCccEEEecC-----------------------ccccccchhhhcCCC-CCEEEcCCCCCcccCCc
Q 020238           79 KLKTLPE---ISSAGNIEVMYLNG-----------------------TAIEELPSSIECLSG-LSALYLDHCKRLKSLPS  131 (329)
Q Consensus        79 ~~~~~~~---~~~~~~L~~L~l~~-----------------------~~i~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~  131 (329)
                      +. .+|.   +..+++|+.|++++                       |.+..+|..+..+++ |++|++++|.+. .+|.
T Consensus       317 l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          317 LK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             CS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             CC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccch
Confidence            44 3332   34444455554444                       444444555555666 666666666544 4554


Q ss_pred             cccCCC--CCcEEeccCCCCCCCCCcccC-------CCccCcEEeccCccccccChhhhh-ccc----------------
Q 020238          132 SLCKLK--SLNSIYLRWCSSLKSLPNELG-------NLEALNSLNAEGTAIREVPLSIVR-LNN----------------  185 (329)
Q Consensus       132 ~~~~l~--~L~~L~l~~~~~~~~~~~~~~-------~l~~L~~L~l~~~~l~~~~~~~~~-~~~----------------  185 (329)
                      .+....  +|+.|++++|...+..|..+.       .+++|+.|++++|.+..+|..+.. +..                
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~  474 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK  474 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCS
T ss_pred             hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCH
Confidence            444333  566666666655555555454       455666666666666655543321 110                


Q ss_pred             --cC-------CCCCccEEEcCCCCCCCcchhhc--CCCCccEEEcCCCcCccCChhhhcCCccceecccc------ccc
Q 020238          186 --FD-------GLQNLTSLYLTDCGITELPENLG--QLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY------CER  248 (329)
Q Consensus       186 --~~-------~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~------~~~  248 (329)
                        +.       ++++|+.|++++|.++++|..+.  .+++|+.|++++|+++.+|..+..+++|+.|++++      |..
T Consensus       475 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l  554 (636)
T 4eco_A          475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT  554 (636)
T ss_dssp             SSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred             HHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence              11       12277888888888877777776  78888888888888888888888888888888854      444


Q ss_pred             ccccCCC---CCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCccc
Q 020238          249 LQSLPKL---PCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKL  294 (329)
Q Consensus       249 l~~~~~~---~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l  294 (329)
                      .+.+|..   +++|+.|++++|.. +.+|..+.  ++|++|++++|+-.
T Consensus       555 ~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          555 LREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             cccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            4555533   47888888888885 77777655  57889999988654

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.97  E-value=3.4e-30  Score=247.75  Aligned_cols=231  Identities=23%  Similarity=0.291  Sum_probs=125.6

Q ss_pred             hhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCC-cccEEeecCCCCCCCCc-ccCC
Q 020238           11 DSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLE-FLKELDLWGCSKLKTLP-EISS   88 (329)
Q Consensus        11 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~   88 (329)
                      ..+..+++|++|++++|......+. ..+..+++|++|++++|.+.+.+|..+..++ +|++|++++|.+.+.++ .+..
T Consensus       312 ~~~~~l~~L~~L~L~~n~l~~~ip~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~  390 (768)
T 3rgz_A          312 PFFGSCSLLESLALSSNNFSGELPM-DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQ  390 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEEEECCH-HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTC
T ss_pred             hHHhcCCCccEEECCCCcccCcCCH-HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhh
Confidence            3344444444444444432222222 0234444444444444444334444443333 44444444443332222 1222


Q ss_pred             --CCCccEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcE
Q 020238           89 --AGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNS  165 (329)
Q Consensus        89 --~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  165 (329)
                        .++|+.|++++|.+. .+|..+..+++|++|++++|.+....|..+..+++|+.|++++|...+.+|..+..+++|+.
T Consensus       391 ~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~  470 (768)
T 3rgz_A          391 NPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLET  470 (768)
T ss_dssp             STTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred             cccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceE
Confidence              345666666666665 45566666777777777776665566666666666777777666666666666666666666


Q ss_pred             EeccCcccc-ccChhhhhccccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCc-cCChhhhcCCccceec
Q 020238          166 LNAEGTAIR-EVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFE-RLPESIIHLSKLAYLK  242 (329)
Q Consensus       166 L~l~~~~l~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~  242 (329)
                      |++++|.+. .+|..      +..+++|+.|++++|.+++ +|..++.+++|+.|++++|+++ .+|..+..+++|+.|+
T Consensus       471 L~L~~N~l~~~~p~~------l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  544 (768)
T 3rgz_A          471 LILDFNDLTGEIPSG------LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD  544 (768)
T ss_dssp             EECCSSCCCSCCCGG------GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred             EEecCCcccCcCCHH------HhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence            666666665 23322      3445666666666666663 5555666666666666666665 5555566666666666


Q ss_pred             cccccc
Q 020238          243 LSYCER  248 (329)
Q Consensus       243 l~~~~~  248 (329)
                      +++|+.
T Consensus       545 Ls~N~l  550 (768)
T 3rgz_A          545 LNTNLF  550 (768)
T ss_dssp             CCSSEE
T ss_pred             CCCCcc
Confidence            665543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=2.9e-29  Score=235.63  Aligned_cols=295  Identities=18%  Similarity=0.141  Sum_probs=241.4

Q ss_pred             CCCCchhhhhhh-ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQLWDS-VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      |++++++.++.. +..+++|++|++++|+ +...|.  .+..+++|++|++++|.+....|..+..+++|++|++++|..
T Consensus       261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          261 LQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPS--GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             CTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCCS--SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             eecCccCccCHHHhccccCCCEEeccCCc-cCCCCh--hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence            356677776544 7889999999999997 667776  688899999999999988777777888999999999999887


Q ss_pred             CCCCcc--cCCCCCccEEEecCcccccc---chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC
Q 020238           80 LKTLPE--ISSAGNIEVMYLNGTAIEEL---PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP  154 (329)
Q Consensus        80 ~~~~~~--~~~~~~L~~L~l~~~~i~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  154 (329)
                      ...++.  +..+++|++|++++|.+...   +..+..+++|++|++++|.+....+..+..+++|++|++++|......+
T Consensus       338 ~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~  417 (606)
T 3t6q_A          338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDA  417 (606)
T ss_dssp             CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTT
T ss_pred             ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCccc
Confidence            755553  66779999999999998854   5678899999999999998877778888899999999999988776655


Q ss_pred             c-ccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC--cc--hhhcCCCCccEEEcCCCcCccC-
Q 020238          155 N-ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE--LP--ENLGQLSLLLELYLEKNNFERL-  228 (329)
Q Consensus       155 ~-~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~--~~~~~~~~L~~L~l~~~~i~~~-  228 (329)
                      . .+..+++|+.|++++|.+...+...     +..+++|+.|++++|.+++  ++  ..+..+++|+.|++++|+++.+ 
T Consensus       418 ~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  492 (606)
T 3t6q_A          418 QSPFQNLHLLKVLNLSHSLLDISSEQL-----FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSID  492 (606)
T ss_dssp             CCTTTTCTTCCEEECTTCCCBTTCTTT-----TTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEEC
T ss_pred             chhhhCcccCCEEECCCCccCCcCHHH-----HhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccC
Confidence            4 4888999999999999988665544     5778999999999999886  22  4578899999999999999955 


Q ss_pred             ChhhhcCCccceecccccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchhHHHHHhh
Q 020238          229 PESIIHLSKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEIREILE  304 (329)
Q Consensus       229 ~~~l~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~  304 (329)
                      |..+..+++|+.|++++|......|   ..+++| .|++++|...+..+..+..+++|++|++++|+--.+.....+..
T Consensus       493 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~~~  570 (606)
T 3t6q_A          493 QHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNIYFLE  570 (606)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGHHHHH
T ss_pred             hhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcHHHHH
Confidence            5788999999999999987655555   344677 99999998665555556667889999999999877766555443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=6.3e-30  Score=245.70  Aligned_cols=280  Identities=15%  Similarity=0.152  Sum_probs=165.0

Q ss_pred             hhhhcc--CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCC-CCc-ccCccccCC-------CcccEEeecCC
Q 020238            9 LWDSVQ--HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCK-SLR-ILPPGIFRL-------EFLKELDLWGC   77 (329)
Q Consensus         9 l~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~l-------~~L~~L~l~~~   77 (329)
                      +|..+.  .+++|++|++++|......|.  .+.++++|++|++++|. +.+ .+|..+..+       ++|++|++++|
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~--~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N  558 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPD--FLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN  558 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCG--GGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChH--HHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC
Confidence            787777  888888888888876666664  67777777777777776 443 344333222       25555555554


Q ss_pred             CCCC------------------------CCcccCCCCCccEEEecCccccccchhhhcCCC-CCEEEcCCCCCcccCCcc
Q 020238           78 SKLK------------------------TLPEISSAGNIEVMYLNGTAIEELPSSIECLSG-LSALYLDHCKRLKSLPSS  132 (329)
Q Consensus        78 ~~~~------------------------~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~-L~~L~l~~~~~~~~~~~~  132 (329)
                      .+..                        .+|.+..+++|+.|++++|.+..+|..+..+++ |++|++++|.+. .+|..
T Consensus       559 ~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~  637 (876)
T 4ecn_A          559 NLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNI  637 (876)
T ss_dssp             CCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSC
T ss_pred             cCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchh
Confidence            4441                        333333344444444444444444444444554 555555554433 33333


Q ss_pred             ccCCC--CCcEEeccCCCCCCCCCcc---cC--CCccCcEEeccCccccccChhhh-hccc------------------c
Q 020238          133 LCKLK--SLNSIYLRWCSSLKSLPNE---LG--NLEALNSLNAEGTAIREVPLSIV-RLNN------------------F  186 (329)
Q Consensus       133 ~~~l~--~L~~L~l~~~~~~~~~~~~---~~--~l~~L~~L~l~~~~l~~~~~~~~-~~~~------------------~  186 (329)
                      +...+  +|+.|++++|...+..|..   +.  ..++|+.|++++|.+..+|..+. .+..                  +
T Consensus       638 ~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~  717 (876)
T 4ecn_A          638 FNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSL  717 (876)
T ss_dssp             CCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSS
T ss_pred             hhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHh
Confidence            32222  1444444444332222110   00  11234444444444443333221 0000                  1


Q ss_pred             -------CCCCCccEEEcCCCCCCCcchhhc--CCCCccEEEcCCCcCccCChhhhcCCccceecccc------cccccc
Q 020238          187 -------DGLQNLTSLYLTDCGITELPENLG--QLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY------CERLQS  251 (329)
Q Consensus       187 -------~~~~~L~~L~l~~~~l~~~~~~~~--~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~------~~~l~~  251 (329)
                             .++++|+.|++++|.++.+|..+.  .+++|+.|++++|+++.+|..+..+++|+.|++++      |...+.
T Consensus       718 ~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~  797 (876)
T 4ecn_A          718 KPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQ  797 (876)
T ss_dssp             SCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred             ccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCccccccccc
Confidence                   122378888888888888887776  78888888888888888888888888888888876      444455


Q ss_pred             cCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCccc
Q 020238          252 LPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKL  294 (329)
Q Consensus       252 ~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l  294 (329)
                      +|.   .+++|+.|++++|.. +.+|..+.  ++|+.|++++|+..
T Consensus       798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNI  840 (876)
T ss_dssp             CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred             ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCC
Confidence            553   347889999998875 77877655  47999999998754

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=9.7e-29  Score=216.38  Aligned_cols=268  Identities=19%  Similarity=0.183  Sum_probs=136.3

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      ++++++.++ .+..+++|++|++++|+ +...+.   +..+++|++|++++|.+.. + ..+..+++|++|++++|.+. 
T Consensus        52 ~~~~i~~~~-~~~~~~~L~~L~l~~n~-i~~~~~---~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~-  123 (347)
T 4fmz_A           52 AGEKVASIQ-GIEYLTNLEYLNLNGNQ-ITDISP---LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNIS-  123 (347)
T ss_dssp             CSSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCC-
T ss_pred             eCCccccch-hhhhcCCccEEEccCCc-cccchh---hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCccc-
Confidence            345555553 35566666666666664 333332   5556666666666654333 2 23555666666666655433 


Q ss_pred             CCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCC-------------
Q 020238           82 TLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCS-------------  148 (329)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------  148 (329)
                      .++.+..+++|+.|++++|........+..+++|++|++++|......+  +..+++|+.|++++|.             
T Consensus       124 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L  201 (347)
T 4fmz_A          124 DISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPLASLTSL  201 (347)
T ss_dssp             CCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGGGGGCTTC
T ss_pred             CchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccccccccCCCcc
Confidence            2333444455555555555333222234455555555555544322111  3444455555554443             


Q ss_pred             ---------CCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEE
Q 020238          149 ---------SLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELY  219 (329)
Q Consensus       149 ---------~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~  219 (329)
                               .....+  +..+++|+.|++++|.+..++.       +..+++|+.|++++|.+++++ .+..+++|+.|+
T Consensus       202 ~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~  271 (347)
T 4fmz_A          202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-------LANLSQLTWLEIGTNQISDIN-AVKDLTKLKMLN  271 (347)
T ss_dssp             CEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSSCCCCCG-GGTTCTTCCEEE
T ss_pred             ceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-------hhcCCCCCEEECCCCccCCCh-hHhcCCCcCEEE
Confidence                     322211  4445555555555555554432       244556666666666665542 355566666666


Q ss_pred             cCCCcCccCChhhhcCCccceecccccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238          220 LEKNNFERLPESIIHLSKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       220 l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~  292 (329)
                      +++|+++.++ .+..+++|+.|++++|......+   ..+++|+.|++++|+. +.++. +..+++|++|++++|+
T Consensus       272 l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l-~~~~~-~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          272 VGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI-TDIRP-LASLSKMDSADFANQV  344 (347)
T ss_dssp             CCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSC-CCCGG-GGGCTTCSEESSSCC-
T ss_pred             ccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcc-ccccC-hhhhhccceeehhhhc
Confidence            6666665553 35556666666666654332222   2345666666666653 32322 4445566666666653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.97  E-value=6.3e-30  Score=240.82  Aligned_cols=283  Identities=17%  Similarity=0.123  Sum_probs=198.2

Q ss_pred             CCCCchhhhhh--hccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCc-ccEEeecCC
Q 020238            1 MPHGNIQQLWD--SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEF-LKELDLWGC   77 (329)
Q Consensus         1 l~~~~~~~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~   77 (329)
                      |++++++.+|.  .+..+++|++|++++|.....+|   .+..+++|++|++++|.+. .+|..+..+++ |++|++++|
T Consensus       312 L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip---~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N  387 (636)
T 4eco_A          312 IGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP---AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHN  387 (636)
T ss_dssp             CCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC---CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSS
T ss_pred             CCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh---hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCC
Confidence            34566666665  66666677777776666332444   4566667777777776544 56666667777 777777777


Q ss_pred             CCCCCCccc-CCC--CCccEEEecCcccc-ccchhhh-------cCCCCCEEEcCCCCCcccCCc-cccCCCCCcEEecc
Q 020238           78 SKLKTLPEI-SSA--GNIEVMYLNGTAIE-ELPSSIE-------CLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLR  145 (329)
Q Consensus        78 ~~~~~~~~~-~~~--~~L~~L~l~~~~i~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~  145 (329)
                      .+. .+|.. ...  ++|+.|++++|.+. ..|..+.       .+++|++|++++|.+. .+|. .+..+++|++|+++
T Consensus       388 ~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls  465 (636)
T 4eco_A          388 KLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLM  465 (636)
T ss_dssp             CCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECC
T ss_pred             cCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECC
Confidence            655 45532 222  36777777777776 3444455       5668888888887765 4444 35568888888988


Q ss_pred             CCCCCCCCCcccC-C-------CccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccE
Q 020238          146 WCSSLKSLPNELG-N-------LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLE  217 (329)
Q Consensus       146 ~~~~~~~~~~~~~-~-------l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~  217 (329)
                      +|... .+|.... .       +++|+.|++++|.+..+|..+.    ...+++|+.|++++|.++++|..+..+++|+.
T Consensus       466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~----~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~  540 (636)
T 4eco_A          466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR----ATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKG  540 (636)
T ss_dssp             SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGS----TTTCTTCCEEECCSSCCSSCCCGGGGCSSCCE
T ss_pred             CCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhh----hccCCCcCEEECCCCCCCCcChhhhcCCCCCE
Confidence            87666 5554432 2       2389999999999888876551    03789999999999999999999999999999


Q ss_pred             EEcC------CCcCc-cCChhhhcCCccceecccccccccccCC-CCCCccEEeccCCCCCcCCCCCC-----CCC---C
Q 020238          218 LYLE------KNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPK-LPCNLSELDAHHCTALESSPGLV-----FPS---R  281 (329)
Q Consensus       218 L~l~------~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c~~l~~~~~~~-----~~~---~  281 (329)
                      |+++      +|++. .+|..+..+++|+.|++++|.. +.+|. ..++|+.|++++|+....-....     ...   .
T Consensus       541 L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~  619 (636)
T 4eco_A          541 FGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLF  619 (636)
T ss_dssp             EECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCCTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEE
T ss_pred             EECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHhCcCCEEECcCCCCccccHHhcchhhhcccceee
Confidence            9995      45555 8889999999999999999886 88884 45899999999998543211111     111   1


Q ss_pred             CCcEEEcCCCcccc
Q 020238          282 DPQYFDLRNNLKLD  295 (329)
Q Consensus       282 ~L~~L~i~~~~~l~  295 (329)
                      .....++.+|+.+.
T Consensus       620 ~~~~~~i~~C~~L~  633 (636)
T 4eco_A          620 YDKTQDIRGCDALD  633 (636)
T ss_dssp             CCTTSEEESCGGGC
T ss_pred             cCCccccCCCcccc
Confidence            23446788998774

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.97  E-value=4.5e-29  Score=239.83  Aligned_cols=281  Identities=21%  Similarity=0.269  Sum_probs=193.9

Q ss_pred             CCchhhhhhhccCCCCceEEEecCCCCccc------------------CCCccccc--CcccCcEEeccCCCCCcccCcc
Q 020238            3 HGNIQQLWDSVQHNGKLKQIISRASNFFTK------------------SPNHSLTL--HLDKLVNLNLNNCKSLRILPPG   62 (329)
Q Consensus         3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~------------------~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~   62 (329)
                      .|+++.+|..+..+++|++|++++|+ +..                  +|.  .+.  ++++|++|++++|.+.+.+|..
T Consensus       434 ~N~L~~IP~~l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~--~l~f~~L~~L~~L~Ls~N~l~~~iP~~  510 (876)
T 4ecn_A          434 TNRITFISKAIQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENE--ELSWSNLKDLTDVELYNCPNMTQLPDF  510 (876)
T ss_dssp             SCEEEEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTS--CCCGGGCTTCCEEEEESCTTCCSCCGG
T ss_pred             cCcccchhHHHhcCCCCCEEECcCCc-CCCCcccccccccccccccccCCh--hhhhccCCCCCEEECcCCCCCccChHH
Confidence            46777799999999999999999998 444                  666  555  9999999999999999999999


Q ss_pred             ccCCCcccEEeecCCC-CCC-CCc--------ccCCCCCccEEEecCccccccch--hhhcCCCCCEEEcCCCCCcccCC
Q 020238           63 IFRLEFLKELDLWGCS-KLK-TLP--------EISSAGNIEVMYLNGTAIEELPS--SIECLSGLSALYLDHCKRLKSLP  130 (329)
Q Consensus        63 ~~~l~~L~~L~l~~~~-~~~-~~~--------~~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~~~  130 (329)
                      +.++++|++|++++|. +.+ .+|        .+..+++|+.|++++|.+..+|.  .+..+++|++|++++|.+. .+|
T Consensus       511 l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp  589 (876)
T 4ecn_A          511 LYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLE  589 (876)
T ss_dssp             GGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCC
T ss_pred             HhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cch
Confidence            9999999999999997 544 344        23344799999999999999998  8999999999999998876 777


Q ss_pred             ccccCCCCCcEEeccCCCCCCCCCcccCCCcc-CcEEeccCccccccChhhhhccc-------------------c----
Q 020238          131 SSLCKLKSLNSIYLRWCSSLKSLPNELGNLEA-LNSLNAEGTAIREVPLSIVRLNN-------------------F----  186 (329)
Q Consensus       131 ~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~-L~~L~l~~~~l~~~~~~~~~~~~-------------------~----  186 (329)
                       .+..+++|+.|++++|... .+|..+..+++ |+.|++++|.+..+|..+.....                   +    
T Consensus       590 -~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l  667 (876)
T 4ecn_A          590 -AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSM  667 (876)
T ss_dssp             -CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCT
T ss_pred             -hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhh
Confidence             7888899999999987766 78878888888 99999988888766643321100                   0    


Q ss_pred             C--CCCCccEEEcCCCCCCCcchhhc-CCCCccEEEcCCCcCccCChhhhc--------CCccceecccccccccccCC-
Q 020238          187 D--GLQNLTSLYLTDCGITELPENLG-QLSLLLELYLEKNNFERLPESIIH--------LSKLAYLKLSYCERLQSLPK-  254 (329)
Q Consensus       187 ~--~~~~L~~L~l~~~~l~~~~~~~~-~~~~L~~L~l~~~~i~~~~~~l~~--------~~~L~~L~l~~~~~l~~~~~-  254 (329)
                      .  .+++|+.|++++|.++.+|..+. .+++|+.|++++|+++.+|..+..        +++|+.|++++|. ++.+|. 
T Consensus       668 ~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~lp~~  746 (876)
T 4ecn_A          668 DDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTSLSDD  746 (876)
T ss_dssp             TTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCCCCGG
T ss_pred             ccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCC-CccchHH
Confidence            0  12245555555555555554432 455555555555555544433222        1255555555543 223331 


Q ss_pred             ----CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCC
Q 020238          255 ----LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN  291 (329)
Q Consensus       255 ----~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~  291 (329)
                          .+++|+.|++++|.. +.+|..+..+++|+.|++++|
T Consensus       747 l~~~~l~~L~~L~Ls~N~L-~~lp~~l~~L~~L~~L~Ls~N  786 (876)
T 4ecn_A          747 FRATTLPYLSNMDVSYNCF-SSFPTQPLNSSQLKAFGIRHQ  786 (876)
T ss_dssp             GSTTTCTTCCEEECCSSCC-SSCCCGGGGCTTCCEEECCCC
T ss_pred             hhhccCCCcCEEEeCCCCC-CccchhhhcCCCCCEEECCCC
Confidence                234555555555542 224444444445555555443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.97  E-value=8.7e-30  Score=219.67  Aligned_cols=248  Identities=18%  Similarity=0.201  Sum_probs=190.4

Q ss_pred             CCceEEEecCCCCcc--cCCCcccccCcccCcEEeccC-CCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCc
Q 020238           17 GKLKQIISRASNFFT--KSPNHSLTLHLDKLVNLNLNN-CKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNI   92 (329)
Q Consensus        17 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L   92 (329)
                      .+++.|+++++....  ..+.  .+..+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+| .+..+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            578888888887433  4554  678888888888885 66666778888888888888888887765555 46667888


Q ss_pred             cEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCC-CCcEEeccCCCCCCCCCcccCCCccCcEEeccC
Q 020238           93 EVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLK-SLNSIYLRWCSSLKSLPNELGNLEALNSLNAEG  170 (329)
Q Consensus        93 ~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  170 (329)
                      ++|++++|.+. .+|..+..+++|++|++++|.+...+|..+..++ +|++|++++|...+..|..+..+. |+.|++++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~  206 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSR  206 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCS
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcC
Confidence            88888888887 6777788888888888888887667777777777 888888888777777777777776 88888888


Q ss_pred             ccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc-cCChhhhcCCccceecccccccc
Q 020238          171 TAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERL  249 (329)
Q Consensus       171 ~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l  249 (329)
                      |.+.......     +..+++|+.|++++|.+++.+..+..+++|+.|++++|+++ .+|..+..+++|+.|++++|+..
T Consensus       207 N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~  281 (313)
T 1ogq_A          207 NMLEGDASVL-----FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC  281 (313)
T ss_dssp             SEEEECCGGG-----CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             CcccCcCCHH-----HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence            8877554443     56778888888888888875555777888888888888887 77778888888888888887766


Q ss_pred             cccCC--CCCCccEEeccCCCCCcC
Q 020238          250 QSLPK--LPCNLSELDAHHCTALES  272 (329)
Q Consensus       250 ~~~~~--~~~~L~~L~l~~c~~l~~  272 (329)
                      +.+|.  .+++|+.+++++|+.+..
T Consensus       282 ~~ip~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          282 GEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             EECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             ccCCCCccccccChHHhcCCCCccC
Confidence            66664  345677777777776543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1.9e-28  Score=223.65  Aligned_cols=292  Identities=17%  Similarity=0.122  Sum_probs=176.5

Q ss_pred             CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238            3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT   82 (329)
Q Consensus         3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   82 (329)
                      +.+++.+|..+.  ++++.|++++|+ +...+.. .+..+++|++|++++|.+....|..+.++++|++|++++|.+...
T Consensus        20 ~~~l~~ip~~~~--~~l~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~   95 (477)
T 2id5_A           20 RKRFVAVPEGIP--TETRLLDLGKNR-IKTLNQD-EFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLI   95 (477)
T ss_dssp             SCCCSSCCSCCC--TTCSEEECCSSC-CCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSC
T ss_pred             CCCcCcCCCCCC--CCCcEEECCCCc-cceECHh-HccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCcc
Confidence            445556654442  466667776665 3333221 566666677777766665555566666666677777666554433


Q ss_pred             Ccc-cCCCCCccEEEecCcccccc-chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238           83 LPE-ISSAGNIEVMYLNGTAIEEL-PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL  160 (329)
Q Consensus        83 ~~~-~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  160 (329)
                      .+. +..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|+.|++++|......+..+..+
T Consensus        96 ~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  175 (477)
T 2id5_A           96 PLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHL  175 (477)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTC
T ss_pred             CcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhccc
Confidence            222 34456666666666666633 3455666666666666666555455556666666666666654443333345555


Q ss_pred             ccCcEEeccCccccccChhh-hhcc------------------ccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEc
Q 020238          161 EALNSLNAEGTAIREVPLSI-VRLN------------------NFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYL  220 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~-~~~~------------------~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l  220 (329)
                      ++|+.|++++|.+..++... ..+.                  ......+|+.|++++|.++++|. .+..+++|+.|++
T Consensus       176 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  255 (477)
T 2id5_A          176 HGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNL  255 (477)
T ss_dssp             TTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeEC
Confidence            56666666655554433211 0000                  01112367777777777777663 5677888888888


Q ss_pred             CCCcCccCC-hhhhcCCccceecccccccccccC---CCCCCccEEeccCCCCCcCCCC-CCCCCCCCcEEEcCCCcccc
Q 020238          221 EKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPG-LVFPSRDPQYFDLRNNLKLD  295 (329)
Q Consensus       221 ~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~i~~~~~l~  295 (329)
                      ++|.++.++ ..+..+++|+.|++++|......+   ..+++|+.|++++|. ++.++. .+..+++|++|++++|+--.
T Consensus       256 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          256 SYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             CCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCccC
Confidence            888887555 457778888888888876444333   234788888888886 444443 44566788899998887665


Q ss_pred             hhHH
Q 020238          296 RNEI  299 (329)
Q Consensus       296 ~~~~  299 (329)
                      +...
T Consensus       335 ~c~~  338 (477)
T 2id5_A          335 DCRL  338 (477)
T ss_dssp             SGGG
T ss_pred             ccch
Confidence            5543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.97  E-value=1.5e-28  Score=230.69  Aligned_cols=241  Identities=17%  Similarity=0.140  Sum_probs=138.6

Q ss_pred             CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      |++|+++.+ +..+..+++|++|++++|......+.  .+.++++|++|++++|.+....|..+.++++|++|++++|.+
T Consensus        40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i  117 (606)
T 3t6q_A           40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHED--TFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGI  117 (606)
T ss_dssp             CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCC
T ss_pred             ccCCccCcCChhHhccCccceEEECCCCccceeChh--hccCccccCeeeCCCCcccccChhhhcccccccEeeccccCc
Confidence            456677776 45677777777777777763332333  567777777777777776666666777777777777777665


Q ss_pred             CCCC-cccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCc--EEeccCCCCCCCCCc
Q 020238           80 LKTL-PEISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLN--SIYLRWCSSLKSLPN  155 (329)
Q Consensus        80 ~~~~-~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~~~~~~~~  155 (329)
                      .... ..+..+++|++|++++|.+..++ +.+..+++|++|++++|.+....+..+..+++|+  .|++++|...+..|.
T Consensus       118 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~  197 (606)
T 3t6q_A          118 SSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPG  197 (606)
T ss_dssp             SCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTT
T ss_pred             ccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChh
Confidence            5432 24555577777777777766442 2333467777777777665544455555666666  566665544333222


Q ss_pred             ccCCC---------------------------------------------------ccCcEEeccCccccccChhhhhcc
Q 020238          156 ELGNL---------------------------------------------------EALNSLNAEGTAIREVPLSIVRLN  184 (329)
Q Consensus       156 ~~~~l---------------------------------------------------~~L~~L~l~~~~l~~~~~~~~~~~  184 (329)
                      .+...                                                   .+|+.+++++|.+..++...    
T Consensus       198 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~----  273 (606)
T 3t6q_A          198 AFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT----  273 (606)
T ss_dssp             TTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT----
T ss_pred             HhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHH----
Confidence            21110                                                   02333333333333333222    


Q ss_pred             ccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceeccccccc
Q 020238          185 NFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCER  248 (329)
Q Consensus       185 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~  248 (329)
                       ++.+++|+.|++++|.++++|..+..+++|+.|++++|.++.+ +..+..+++|++|++++|..
T Consensus       274 -~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~  337 (606)
T 3t6q_A          274 -FHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK  337 (606)
T ss_dssp             -TTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS
T ss_pred             -hccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc
Confidence             4455566666666666666655555566666666666655533 33455555555555555543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=1e-28  Score=225.34  Aligned_cols=261  Identities=20%  Similarity=0.160  Sum_probs=167.8

Q ss_pred             CCCCchhhh-hhhccCCCCceEEEecCCCCcccC-CCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCC
Q 020238            1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKS-PNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCS   78 (329)
Q Consensus         1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~   78 (329)
                      |++|+++.+ +..+..+++|++|++++|. +... +.  .+.++++|++|++++|.+....+..+.++++|++|++++|.
T Consensus        39 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  115 (477)
T 2id5_A           39 LGKNRIKTLNQDEFASFPHLEELELNENI-VSAVEPG--AFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENK  115 (477)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTT--TTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSC
T ss_pred             CCCCccceECHhHccCCCCCCEEECCCCc-cCEeChh--hhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCc
Confidence            455666665 3456666667777766665 3333 32  45566666666666655443323334555666666666555


Q ss_pred             CCCCCc-ccCCCCCccEEEecCcc------------------------ccccch-hhhcCCCCCEEEcCCCCCcccCCcc
Q 020238           79 KLKTLP-EISSAGNIEVMYLNGTA------------------------IEELPS-SIECLSGLSALYLDHCKRLKSLPSS  132 (329)
Q Consensus        79 ~~~~~~-~~~~~~~L~~L~l~~~~------------------------i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~  132 (329)
                      +....+ .+..+++|+.|++++|.                        +..++. .+..+++|+.|++.+|.+....+..
T Consensus       116 i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~  195 (477)
T 2id5_A          116 IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYS  195 (477)
T ss_dssp             CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTC
T ss_pred             cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhh
Confidence            443322 23333445555555444                        443332 2444555555555554444433444


Q ss_pred             ccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcC
Q 020238          133 LCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQ  211 (329)
Q Consensus       133 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~  211 (329)
                      +..+++|+.|++++|...+.++.......+|+.|++++|.+..++...     +..+++|+.|++++|.+++++. .+..
T Consensus       196 ~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~  270 (477)
T 2id5_A          196 FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA-----VRHLVYLRFLNLSYNPISTIEGSMLHE  270 (477)
T ss_dssp             SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH-----HTTCTTCCEEECCSSCCCEECTTSCTT
T ss_pred             cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH-----hcCccccCeeECCCCcCCccChhhccc
Confidence            555666666666666555555555444557777888888877777544     5778999999999999998654 5788


Q ss_pred             CCCccEEEcCCCcCccC-ChhhhcCCccceecccccccccccC----CCCCCccEEeccCCCCC
Q 020238          212 LSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTAL  270 (329)
Q Consensus       212 ~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l  270 (329)
                      +++|+.|++++|+++.+ +..+..+++|+.|++++|. ++.++    ..+++|+.|++++|+..
T Consensus       271 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          271 LLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             CTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             cccCCEEECCCCccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCCcc
Confidence            99999999999999955 5788999999999999975 45555    34579999999999854

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=2e-28  Score=213.11  Aligned_cols=274  Identities=17%  Similarity=0.178  Sum_probs=155.7

Q ss_pred             CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238            3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT   82 (329)
Q Consensus         3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   82 (329)
                      +++++.+|..+  .++++.|++++|. +...+.. .+..+++|++|++++|.+....|..+..+++|++|++++|.+. .
T Consensus        42 ~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~  116 (332)
T 2ft3_A           42 DLGLKAVPKEI--SPDTTLLDLQNND-ISELRKD-DFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-E  116 (332)
T ss_dssp             SSCCSSCCSCC--CTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-S
T ss_pred             CCCccccCCCC--CCCCeEEECCCCc-CCccCHh-HhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-c
Confidence            44455555433  2456666666655 3333221 4556666666666666555544555666666666666665443 2


Q ss_pred             CcccCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcc--cCCccccCCCCCcEEeccCCCCCCCCCcccCC
Q 020238           83 LPEISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLK--SLPSSLCKLKSLNSIYLRWCSSLKSLPNELGN  159 (329)
Q Consensus        83 ~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  159 (329)
                      +|.... ++|++|++++|.+..++. .+..+++|++|++++|.+..  ..+..+..+ +|+.|++++|... .+|..+. 
T Consensus       117 l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~-~l~~~~~-  192 (332)
T 2ft3_A          117 IPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT-GIPKDLP-  192 (332)
T ss_dssp             CCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS-SCCSSSC-
T ss_pred             cCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC-ccCcccc-
Confidence            322111 566666666666665443 35556666666666655432  333444444 5666666664433 2443332 


Q ss_pred             CccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCcc
Q 020238          160 LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSKL  238 (329)
Q Consensus       160 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L  238 (329)
                       ++|+.|++++|.+..++...     +..+++|+.|++++|.+++++. .+..+++|+.|++++|+++.+|..+..+++|
T Consensus       193 -~~L~~L~l~~n~i~~~~~~~-----l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L  266 (332)
T 2ft3_A          193 -ETLNELHLDHNKIQAIELED-----LLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLL  266 (332)
T ss_dssp             -SSCSCCBCCSSCCCCCCTTS-----STTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTC
T ss_pred             -CCCCEEECCCCcCCccCHHH-----hcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccC
Confidence             46666666666666554332     4566777777777777777543 5666777777777777777777767777777


Q ss_pred             ceecccccccccccCC----------CCCCccEEeccCCCCC--cCCCCCCCCCCCCcEEEcCCCc
Q 020238          239 AYLKLSYCERLQSLPK----------LPCNLSELDAHHCTAL--ESSPGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       239 ~~L~l~~~~~l~~~~~----------~~~~L~~L~l~~c~~l--~~~~~~~~~~~~L~~L~i~~~~  292 (329)
                      +.|++++|. ++.++.          ..++|+.|++++|+..  +..+..+..++.|+.+++++|.
T Consensus       267 ~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          267 QVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            777777754 333331          1345677777777654  3334445556677777777664

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=9.1e-28  Score=208.74  Aligned_cols=275  Identities=17%  Similarity=0.167  Sum_probs=166.8

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      ++++++.+|..+.  ++++.|++++|. +...+.. .+..+++|++|++++|.+....|..+..+++|++|++++|.+. 
T Consensus        39 ~~~~l~~lp~~~~--~~l~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-  113 (330)
T 1xku_A           39 SDLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-  113 (330)
T ss_dssp             TTSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-
T ss_pred             cCCCccccCccCC--CCCeEEECCCCc-CCEeChh-hhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-
Confidence            3445555554332  567777777765 4444332 4666777777777777666555666677777777777776544 


Q ss_pred             CCcccCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcc--cCCccccCCCCCcEEeccCCCCCCCCCcccC
Q 020238           82 TLPEISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLK--SLPSSLCKLKSLNSIYLRWCSSLKSLPNELG  158 (329)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  158 (329)
                      .+|... .++|+.|++++|.+..++. .+..+++|++|++++|.+..  ..+..+..+++|++|++++|... .+|..+.
T Consensus       114 ~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~  191 (330)
T 1xku_A          114 ELPEKM-PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP  191 (330)
T ss_dssp             BCCSSC-CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC
T ss_pred             ccChhh-cccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc
Confidence            333211 1567777777777765543 35667777777777766543  34455666777777777775443 3444332


Q ss_pred             CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCc
Q 020238          159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSK  237 (329)
Q Consensus       159 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~  237 (329)
                        ++|+.|++++|.+..++...     +..+++|+.|++++|.+++++. .+..+++|+.|++++|+++.+|..+..+++
T Consensus       192 --~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~  264 (330)
T 1xku_A          192 --PSLTELHLDGNKITKVDAAS-----LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKY  264 (330)
T ss_dssp             --TTCSEEECTTSCCCEECTGG-----GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSS
T ss_pred             --ccCCEEECCCCcCCccCHHH-----hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCC
Confidence              56777777777766554333     4566777777777777776443 566677777777777777777766777777


Q ss_pred             cceecccccccccccCC----------CCCCccEEeccCCCCCc--CCCCCCCCCCCCcEEEcCCC
Q 020238          238 LAYLKLSYCERLQSLPK----------LPCNLSELDAHHCTALE--SSPGLVFPSRDPQYFDLRNN  291 (329)
Q Consensus       238 L~~L~l~~~~~l~~~~~----------~~~~L~~L~l~~c~~l~--~~~~~~~~~~~L~~L~i~~~  291 (329)
                      |++|++++|+ ++.++.          ..++++.+++++|+...  ..|.....+..++.+++++|
T Consensus       265 L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          265 IQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             cCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            7777777754 333331          12466777777776431  22344445566677777665

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=226.77  Aligned_cols=119  Identities=15%  Similarity=0.033  Sum_probs=81.7

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      +++++++.+|..+.  ++|++|++++|. +...+. ..+..+++|++|++++|.+....|..+.++++|++|++++|.+.
T Consensus         7 ls~n~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~   82 (520)
T 2z7x_B            7 RSKNGLIHVPKDLS--QKTTILNISQNY-ISELWT-SDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV   82 (520)
T ss_dssp             CTTSCCSSCCCSCC--TTCSEEECCSSC-CCCCCH-HHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC
T ss_pred             cCCCCccccccccc--ccccEEECCCCc-ccccCh-hhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee
Confidence            46777777776554  678888888776 444432 15677777888888877766666677777777777777776554


Q ss_pred             CCCcccCCCCCccEEEecCccccc--cchhhhcCCCCCEEEcCCCCC
Q 020238           81 KTLPEISSAGNIEVMYLNGTAIEE--LPSSIECLSGLSALYLDHCKR  125 (329)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~~  125 (329)
                       .+|.. .+++|++|++++|.+..  +|..++.+++|++|++++|.+
T Consensus        83 -~lp~~-~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l  127 (520)
T 2z7x_B           83 -KISCH-PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL  127 (520)
T ss_dssp             -EEECC-CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSC
T ss_pred             -ecCcc-ccCCccEEeccCCccccccchhhhccCCcceEEEecCccc
Confidence             45544 56777777777777764  456677777777777776654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.96  E-value=3e-28  Score=220.93  Aligned_cols=285  Identities=16%  Similarity=0.135  Sum_probs=221.2

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccC-CCcccccCcccCcEEeccCCCCCccc-CccccCCCcccEEeecCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKS-PNHSLTLHLDKLVNLNLNNCKSLRIL-PPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~   79 (329)
                      ++.+++.+|. +  .++|++|++++|. +... +.  .+..+++|++|++++|.....+ +..+.++++|++|++++|.+
T Consensus        18 ~~~~l~~lp~-l--~~~l~~L~Ls~n~-i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l   91 (455)
T 3v47_A           18 INRGLHQVPE-L--PAHVNYVDLSLNS-IAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF   91 (455)
T ss_dssp             CSSCCSSCCC-C--CTTCCEEECCSSC-CCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred             CCCCcccCCC-C--CCccCEEEecCCc-cCcCChh--HhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence            4567777775 2  3789999999998 4544 44  7899999999999999877555 56788999999999999987


Q ss_pred             CCCCc-ccCCCCCccEEEecCccccc-cchh--hhcCCCCCEEEcCCCCCcccCCcc-ccCCCCCcEEeccCCCCCCCCC
Q 020238           80 LKTLP-EISSAGNIEVMYLNGTAIEE-LPSS--IECLSGLSALYLDHCKRLKSLPSS-LCKLKSLNSIYLRWCSSLKSLP  154 (329)
Q Consensus        80 ~~~~~-~~~~~~~L~~L~l~~~~i~~-~~~~--~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~  154 (329)
                      ....+ .+..+++|++|++++|.+.. .+..  +..+++|++|++++|.+....|.. +.++++|++|++++|......+
T Consensus        92 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  171 (455)
T 3v47_A           92 LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICE  171 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCT
T ss_pred             CccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccCh
Confidence            76655 56777999999999999984 3443  888999999999999887766665 7899999999999988776655


Q ss_pred             cccCC----------------------------------CccCcEEeccCcccccc-Chhhhhc---c------------
Q 020238          155 NELGN----------------------------------LEALNSLNAEGTAIREV-PLSIVRL---N------------  184 (329)
Q Consensus       155 ~~~~~----------------------------------l~~L~~L~l~~~~l~~~-~~~~~~~---~------------  184 (329)
                      ..+..                                  +++|+.|++++|.+... +..+...   .            
T Consensus       172 ~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~  251 (455)
T 3v47_A          172 EDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN  251 (455)
T ss_dssp             TTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTT
T ss_pred             hhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccc
Confidence            54433                                  35677788877766521 1111100   0            


Q ss_pred             ----------------ccC--CCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceeccc
Q 020238          185 ----------------NFD--GLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLS  244 (329)
Q Consensus       185 ----------------~~~--~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~  244 (329)
                                      .+.  ..++|+.|++++|.+++ .+..+..+++|+.|++++|+++.+ +..+..+++|++|+++
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  331 (455)
T 3v47_A          252 MGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLS  331 (455)
T ss_dssp             TSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECC
Confidence                            000  12579999999999888 466788899999999999999965 5688899999999999


Q ss_pred             ccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238          245 YCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       245 ~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~  292 (329)
                      +|...+..+   ..+++|+.|++++|...+..+..+..+++|++|++++|.
T Consensus       332 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  382 (455)
T 3v47_A          332 QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ  382 (455)
T ss_dssp             SSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence            986533333   346899999999998766667788889999999999973

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=6.3e-28  Score=211.21  Aligned_cols=265  Identities=19%  Similarity=0.241  Sum_probs=177.3

Q ss_pred             ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCc
Q 020238           13 VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNI   92 (329)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L   92 (329)
                      +..+++|++|+++++. +...+   .+..+++|++|++++|.+.. ++. +..+++|++|++++|.+. .++.+..+++|
T Consensus        40 ~~~l~~L~~L~l~~~~-i~~~~---~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~-~~~~~~~l~~L  112 (347)
T 4fmz_A           40 QEELESITKLVVAGEK-VASIQ---GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKIT-DISALQNLTNL  112 (347)
T ss_dssp             HHHHTTCSEEECCSSC-CCCCT---TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC-CCGGGTTCTTC
T ss_pred             chhcccccEEEEeCCc-cccch---hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCccc-CchHHcCCCcC
Confidence            3478899999999987 55554   47889999999999987654 344 789999999999998654 56778888999


Q ss_pred             cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238           93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA  172 (329)
Q Consensus        93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  172 (329)
                      ++|++++|.+..++. +..+++|++|++++|......+. +..+++|++|++++|......+  +..+++|+.|++++|.
T Consensus       113 ~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          113 RELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             SEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSC
T ss_pred             CEEECcCCcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCc
Confidence            999999999998776 88999999999999876665544 8889999999999977654432  7788999999999998


Q ss_pred             ccccChhhhhc----------------cccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCC
Q 020238          173 IREVPLSIVRL----------------NNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLS  236 (329)
Q Consensus       173 l~~~~~~~~~~----------------~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~  236 (329)
                      +..++. +..+                ..+..+++|+.|++++|.+++++. +..+++|+.|++++|.++.++ .+..++
T Consensus       189 l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~~~~l~  265 (347)
T 4fmz_A          189 IEDISP-LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDIN-AVKDLT  265 (347)
T ss_dssp             CCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCT
T ss_pred             cccccc-ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCCh-hHhcCC
Confidence            876653 1110                002334445555555555444433 444555555555555544432 344455


Q ss_pred             ccceecccccccccccC--CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238          237 KLAYLKLSYCERLQSLP--KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       237 ~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~  292 (329)
                      +|+.|++++|. ++.++  ..+++|+.|++++|......+..+..+++|++|++++|+
T Consensus       266 ~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  322 (347)
T 4fmz_A          266 KLKMLNVGSNQ-ISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH  322 (347)
T ss_dssp             TCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred             CcCEEEccCCc-cCCChhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence            55555555542 22222  223455555555554333333333444555555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=1.2e-27  Score=222.71  Aligned_cols=119  Identities=14%  Similarity=0.081  Sum_probs=81.1

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      +++++++.+|..+.  +++++|++++|. +...+. ..+.++++|++|++++|.+....|..+.++++|++|++++|.+.
T Consensus        38 ls~~~L~~ip~~~~--~~L~~L~Ls~N~-i~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  113 (562)
T 3a79_B           38 YSNRNLTHVPKDLP--PRTKALSLSQNS-ISELRM-PDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ  113 (562)
T ss_dssp             CTTSCCCSCCTTSC--TTCCEEECCSSC-CCCCCG-GGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC
T ss_pred             cCCCCCccCCCCCC--CCcCEEECCCCC-ccccCh-hhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC
Confidence            35667777776553  677888888776 444442 15677777888888877766666677777777778887776654


Q ss_pred             CCCcccCCCCCccEEEecCccccccc--hhhhcCCCCCEEEcCCCCC
Q 020238           81 KTLPEISSAGNIEVMYLNGTAIEELP--SSIECLSGLSALYLDHCKR  125 (329)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l~~~~~  125 (329)
                       .+|.. .+++|++|++++|.+..++  ..++.+++|++|++++|.+
T Consensus       114 -~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l  158 (562)
T 3a79_B          114 -NISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF  158 (562)
T ss_dssp             -EECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBC
T ss_pred             -ccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCcc
Confidence             45544 5677777777777776543  5677777777777776654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.96  E-value=2.2e-27  Score=218.81  Aligned_cols=162  Identities=16%  Similarity=0.121  Sum_probs=103.9

Q ss_pred             cCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-cchh-hcC
Q 020238          134 CKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPEN-LGQ  211 (329)
Q Consensus       134 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~-~~~  211 (329)
                      ..+++|++|++++|...+..|..+..+++|+.|++++|.+..++.....   +..+++|+.|++++|.+++ +|.. +..
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~---~~~l~~L~~L~Ls~N~l~~~l~~~~~~~  397 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM---TTQMKSLQQLDISQNSVSYDEKKGDCSW  397 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH---HTTCTTCCEEECCSSCCBCCGGGCSCCC
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH---HhhCCCCCEEECCCCcCCcccccchhcc
Confidence            3455666666666666655666666666777777777766643321111   3556677777777777766 6553 555


Q ss_pred             CCCccEEEcCCCcCc-cCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCC-CCCCCCCcEE
Q 020238          212 LSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGL-VFPSRDPQYF  286 (329)
Q Consensus       212 ~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L  286 (329)
                      +++|+.|++++|+++ .++..+.  ++|+.|++++|. ++.+|.   .+++|+.|++++|. ++.+|.. +..+++|++|
T Consensus       398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L  473 (520)
T 2z7x_B          398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKI  473 (520)
T ss_dssp             CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEE
T ss_pred             CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEE
Confidence            677777777777665 3333322  577777777764 445653   34788888888886 4566665 5667788888


Q ss_pred             EcCCCcccchhHHHHH
Q 020238          287 DLRNNLKLDRNEIREI  302 (329)
Q Consensus       287 ~i~~~~~l~~~~~~~~  302 (329)
                      ++++|+--.+.....+
T Consensus       474 ~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          474 WLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             ECCSSCBCCCHHHHHH
T ss_pred             ECcCCCCcccCCchHH
Confidence            8888887766665554

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=7.9e-28  Score=223.24  Aligned_cols=99  Identities=15%  Similarity=0.198  Sum_probs=52.6

Q ss_pred             CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      |++++++.+ +..+..+++|++|++++|+ +...+.. .+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        33 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  110 (549)
T 2z81_A           33 LSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGD-AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPY  110 (549)
T ss_dssp             CCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCC
T ss_pred             CcCCccCccChhhhhcCCcccEEECCCCC-cCccChh-hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcc
Confidence            345556555 3445666666666666665 3333321 455666666666666655444344455566666666666554


Q ss_pred             CC-CC-cccCCCCCccEEEecCcc
Q 020238           80 LK-TL-PEISSAGNIEVMYLNGTA  101 (329)
Q Consensus        80 ~~-~~-~~~~~~~~L~~L~l~~~~  101 (329)
                      .. .. +.+..+++|++|++++|.
T Consensus       111 ~~~~~~~~~~~l~~L~~L~L~~n~  134 (549)
T 2z81_A          111 QTLGVTSLFPNLTNLQTLRIGNVE  134 (549)
T ss_dssp             SSSCSSCSCTTCTTCCEEEEEESS
T ss_pred             cccchhhhhhccCCccEEECCCCc
Confidence            32 11 233444555555555444

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.4e-27  Score=212.37  Aligned_cols=274  Identities=12%  Similarity=0.071  Sum_probs=176.1

Q ss_pred             CCchhhhhhh-ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238            3 HGNIQQLWDS-VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         3 ~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      ++.++.+|.. +..+++|++|++++|. +...+.. .+..+++|++|++++|.+....|..+..+++|++|++++|.+..
T Consensus        54 ~~~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~  131 (390)
T 3o6n_A           54 NSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS  131 (390)
T ss_dssp             SCEESEECTHHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCchhhCChhHhcccccCcEEECCCCc-ccccChh-hccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc
Confidence            4555556544 4566777777777665 3333321 56667777777777766555555556667777777777765543


Q ss_pred             CCcc-cCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC--------
Q 020238           82 TLPE-ISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK--------  151 (329)
Q Consensus        82 ~~~~-~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--------  151 (329)
                      ..+. +..+++|++|++++|.+..++ ..+..+++|++|++++|.+....   +..+++|+.+++++|....        
T Consensus       132 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~  208 (390)
T 3o6n_A          132 LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVE  208 (390)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCS
T ss_pred             CCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcce
Confidence            2222 345567777777777666443 34666677777777776543321   2233444444443332211        


Q ss_pred             ----------CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEc
Q 020238          152 ----------SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYL  220 (329)
Q Consensus       152 ----------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l  220 (329)
                                .++.  ...++|+.|++++|.+...+ .      +..+++|+.|++++|.++++ |..+..+++|+.|++
T Consensus       209 ~L~l~~n~l~~~~~--~~~~~L~~L~l~~n~l~~~~-~------l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          209 ELDASHNSINVVRG--PVNVELTILKLQHNNLTDTA-W------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             EEECCSSCCCEEEC--CCCSSCCEEECCSSCCCCCG-G------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEEC
T ss_pred             EEECCCCeeeeccc--cccccccEEECCCCCCcccH-H------HcCCCCccEEECCCCcCCCcChhHccccccCCEEEC
Confidence                      1111  11245666666666666442 1      46678899999999988884 667888999999999


Q ss_pred             CCCcCccCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCccc
Q 020238          221 EKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKL  294 (329)
Q Consensus       221 ~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l  294 (329)
                      ++|+++.++..+..+++|+.|++++|. ++.+|.   .+++|+.|++++|. ++.++  ...++.|++|++++|+--
T Consensus       280 ~~n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          280 SNNRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             CSSCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCSEEECCSSCEE
T ss_pred             CCCcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc-cceeC--chhhccCCEEEcCCCCcc
Confidence            999998887777788899999999975 445553   34789999999988 44454  456678999999998644

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.96  E-value=2.7e-27  Score=214.15  Aligned_cols=201  Identities=18%  Similarity=0.182  Sum_probs=123.1

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      |++++++.+| .+..+++|++|++++|+ +...+    +..+++|++|++++|.+.+ ++  +..+++|++|++++|.+.
T Consensus        49 Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~L~L~~N~l~  119 (457)
T 3bz5_A           49 CHNSSITDMT-GIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTYLNCDTNKLT  119 (457)
T ss_dssp             CCSSCCCCCT-TGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCEEECCSSCCS
T ss_pred             ccCCCcccCh-hhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCCCce-ee--cCCCCcCCEEECCCCcCC
Confidence            3455555554 45666666666666665 33332    4556666666666665443 22  556666666666666544


Q ss_pred             CCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238           81 KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL  160 (329)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  160 (329)
                      . ++ +..+++|+.|++++|.+..++  ++.+++|++|++++|...+.+  .+..+++|+.|++++|...+ +|  +..+
T Consensus       120 ~-l~-~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l  190 (457)
T 3bz5_A          120 K-LD-VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQN  190 (457)
T ss_dssp             C-CC-CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTC
T ss_pred             e-ec-CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccC
Confidence            3 32 555566666666666666543  555666666666666544444  24556667777776654443 33  5566


Q ss_pred             ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238          161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLP  229 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~  229 (329)
                      ++|+.|++++|.+..++        +..+++|+.|++++|.++++|  +..+++|+.|++++|+++.++
T Consensus       191 ~~L~~L~l~~N~l~~~~--------l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~  249 (457)
T 3bz5_A          191 KLLNRLNCDTNNITKLD--------LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELD  249 (457)
T ss_dssp             TTCCEEECCSSCCSCCC--------CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC
T ss_pred             CCCCEEECcCCcCCeec--------cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcC
Confidence            66777777776666542        455677777777777777765  667777777777777776554

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.96  E-value=1.7e-27  Score=211.69  Aligned_cols=258  Identities=13%  Similarity=0.093  Sum_probs=204.8

Q ss_pred             CCCCchhhhhh-hccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQLWD-SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      |++++++.++. .+..+++|++|++++|. +...+.. .+..+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l  153 (390)
T 3o6n_A           76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPH-VFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL  153 (390)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcccccChhhccCCCCcCEEECCCCC-CCcCCHH-HhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence            56788888764 78999999999999998 5555442 688999999999999886643334467899999999999887


Q ss_pred             CCCCcc-cCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCccc-CCcc---------------ccCCCCCcEE
Q 020238           80 LKTLPE-ISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKS-LPSS---------------LCKLKSLNSI  142 (329)
Q Consensus        80 ~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~---------------~~~l~~L~~L  142 (329)
                      ....+. +..+++|+.|++++|.+..++  +..+++|+++++++|.+... .+..               ....++|+.|
T Consensus       154 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L  231 (390)
T 3o6n_A          154 ERIEDDTFQATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL  231 (390)
T ss_dssp             CBCCTTTTSSCTTCCEEECCSSCCSBCC--GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEE
T ss_pred             CccChhhccCCCCCCEEECCCCcCCccc--cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEE
Confidence            655553 667799999999999988654  45566777766666544321 1100               1124679999


Q ss_pred             eccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCC
Q 020238          143 YLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEK  222 (329)
Q Consensus       143 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  222 (329)
                      ++++|.....  ..+..+++|+.|++++|.+..++...     +..+++|+.|++++|.+++++..+..+++|+.|++++
T Consensus       232 ~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~  304 (390)
T 3o6n_A          232 KLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP-----FVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSH  304 (390)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG-----GTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCS
T ss_pred             ECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH-----ccccccCCEEECCCCcCcccCcccCCCCCCCEEECCC
Confidence            9999776653  56788999999999999998764433     5778999999999999999988888899999999999


Q ss_pred             CcCccCChhhhcCCccceecccccccccccC-CCCCCccEEeccCCCCC
Q 020238          223 NNFERLPESIIHLSKLAYLKLSYCERLQSLP-KLPCNLSELDAHHCTAL  270 (329)
Q Consensus       223 ~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~c~~l  270 (329)
                      |+++.+|..+..+++|+.|++++|+. +.++ ..+++|+.|++++|+.-
T Consensus       305 n~l~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~~~L~~L~l~~N~~~  352 (390)
T 3o6n_A          305 NHLLHVERNQPQFDRLENLYLDHNSI-VTLKLSTHHTLKNLTLSHNDWD  352 (390)
T ss_dssp             SCCCCCGGGHHHHTTCSEEECCSSCC-CCCCCCTTCCCSEEECCSSCEE
T ss_pred             CcceecCccccccCcCCEEECCCCcc-ceeCchhhccCCEEEcCCCCcc
Confidence            99999998899999999999999874 4444 66789999999999753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=3.8e-27  Score=221.20  Aligned_cols=125  Identities=15%  Similarity=0.073  Sum_probs=94.8

Q ss_pred             CCCCchhhhhh-hccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQLWD-SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      |++++++.++. .+..+++|++|++++|. +...+.. .+.++++|++|++++|.+....|..+.++++|++|++++|.+
T Consensus        39 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~i~~~-~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l  116 (606)
T 3vq2_A           39 LSFNPLKILKSYSFSNFSELQWLDLSRCE-IETIEDK-AWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL  116 (606)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCC
T ss_pred             CCCCCcCEeChhhccCCccCcEEeCCCCc-ccccCHH-HhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCcc
Confidence            46677777754 67888888888888887 4444331 678888888888888887766678888888888888888876


Q ss_pred             CCCC-cccCCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcc
Q 020238           80 LKTL-PEISSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLK  127 (329)
Q Consensus        80 ~~~~-~~~~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~  127 (329)
                      .... ..+..+++|++|++++|.+.  .+|..++.+++|++|++++|.+..
T Consensus       117 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~  167 (606)
T 3vq2_A          117 ASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT  167 (606)
T ss_dssp             CCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred             ccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence            5444 24666788888888888887  467788888888888888876543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=7.1e-27  Score=217.39  Aligned_cols=164  Identities=17%  Similarity=0.100  Sum_probs=103.6

Q ss_pred             cCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-cchh-hcC
Q 020238          134 CKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPEN-LGQ  211 (329)
Q Consensus       134 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~-~~~  211 (329)
                      ..+++|++|++++|...+..|..+..+++|+.|++++|.+..++.....   +..+++|+.|++++|.+++ +|.. +..
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~---~~~l~~L~~L~l~~N~l~~~~~~~~~~~  426 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM---TKNMSSLETLDVSLNSLNSHAYDRTCAW  426 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHT---TTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhh---hcCCCCCCEEECCCCcCCCccChhhhcC
Confidence            3455666666666666655666666667777777777766654432111   4556677777777777766 5543 555


Q ss_pred             CCCccEEEcCCCcCc-cCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCC-CCCCCCCcEE
Q 020238          212 LSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGL-VFPSRDPQYF  286 (329)
Q Consensus       212 ~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L  286 (329)
                      +++|+.|++++|+++ .++..+.  ++|+.|++++|. ++.+|.   .+++|+.|++++|. ++.+|.. +..+++|++|
T Consensus       427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L  502 (562)
T 3a79_B          427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYI  502 (562)
T ss_dssp             CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCE
T ss_pred             cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCc-CcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEE
Confidence            677777777777665 3333222  577777777763 456663   34678888888876 4456655 5667778888


Q ss_pred             EcCCCcccchhHHHHHhh
Q 020238          287 DLRNNLKLDRNEIREILE  304 (329)
Q Consensus       287 ~i~~~~~l~~~~~~~~~~  304 (329)
                      ++++|+--.+.....+..
T Consensus       503 ~l~~N~~~c~c~~~~~~~  520 (562)
T 3a79_B          503 WLHDNPWDCTCPGIRYLS  520 (562)
T ss_dssp             ECCSCCBCCCHHHHHHHH
T ss_pred             EecCCCcCCCcchHHHHH
Confidence            888887666665555433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.96  E-value=2.2e-27  Score=222.87  Aligned_cols=286  Identities=19%  Similarity=0.156  Sum_probs=236.0

Q ss_pred             CchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCC
Q 020238            4 GNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTL   83 (329)
Q Consensus         4 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~   83 (329)
                      ++++.....+..+++|+.|+++++. +...+   .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|......
T Consensus       272 ~~~~~~~~~~~~l~~L~~L~l~~~~-~~~l~---~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~  344 (606)
T 3vq2_A          272 NDFSDDIVKFHCLANVSAMSLAGVS-IKYLE---DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF  344 (606)
T ss_dssp             TTCCGGGGSCGGGTTCSEEEEESCC-CCCCC---CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC
T ss_pred             ccccccccccccCCCCCEEEecCcc-chhhh---hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch
Confidence            3444443447889999999999998 55555   577899999999999987 7777 44 9999999999998665544


Q ss_pred             cccCCCCCccEEEecCcccccc---chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC-cccCC
Q 020238           84 PEISSAGNIEVMYLNGTAIEEL---PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP-NELGN  159 (329)
Q Consensus        84 ~~~~~~~~L~~L~l~~~~i~~~---~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~  159 (329)
                       .+..+++|+.|++++|.+...   +..+..+++|++|++++|.+ ..++..+..+++|+.|++++|...+..+ ..+..
T Consensus       345 -~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~  422 (606)
T 3vq2_A          345 -KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLS  422 (606)
T ss_dssp             -CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-EEECCCCTTCTTCCEEECTTSEEESTTTTTTTTT
T ss_pred             -hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-ccchhhccCCCCCCeeECCCCccCCccChhhhhc
Confidence             556779999999999998854   77889999999999999875 4466778899999999999988877766 57889


Q ss_pred             CccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC--cchhhcCCCCccEEEcCCCcCccC-ChhhhcCC
Q 020238          160 LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERL-PESIIHLS  236 (329)
Q Consensus       160 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~  236 (329)
                      +++|+.|++++|.+.......     +..+++|+.|++++|.+++  +|..+..+++|+.|++++|+++.+ |..+..++
T Consensus       423 l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  497 (606)
T 3vq2_A          423 LEKLLYLDISYTNTKIDFDGI-----FLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH  497 (606)
T ss_dssp             CTTCCEEECTTSCCEECCTTT-----TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             cccCCEEECcCCCCCccchhh-----hcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence            999999999999988654443     5778999999999999987  677889999999999999999855 57789999


Q ss_pred             ccceecccccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCC-CCcEEEcCCCcccchhHHHHHhh
Q 020238          237 KLAYLKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSR-DPQYFDLRNNLKLDRNEIREILE  304 (329)
Q Consensus       237 ~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~-~L~~L~i~~~~~l~~~~~~~~~~  304 (329)
                      +|++|++++|...+..|   ..+++|+.|++++|. ++.+|..+...+ +|++|++++|+-..+.....+..
T Consensus       498 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~~~~  568 (606)
T 3vq2_A          498 RLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQ  568 (606)
T ss_dssp             TCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCCCCCSSTTHHHHT
T ss_pred             cCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCCcccCCccHHHHH
Confidence            99999999987655445   345789999999998 567877776665 59999999998877666555433

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.96  E-value=1.8e-28  Score=211.37  Aligned_cols=242  Identities=19%  Similarity=0.207  Sum_probs=211.1

Q ss_pred             CCCchh---hhhhhccCCCCceEEEecC-CCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCC
Q 020238            2 PHGNIQ---QLWDSVQHNGKLKQIISRA-SNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGC   77 (329)
Q Consensus         2 ~~~~~~---~l~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   77 (329)
                      ++++++   .+|..+..+++|++|++++ +......|.  .+..+++|++|++++|.+.+.+|..+..+++|++|++++|
T Consensus        58 ~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~--~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N  135 (313)
T 1ogq_A           58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred             CCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCCh--hHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCC
Confidence            456676   4788899999999999996 664445665  7899999999999999988889999999999999999999


Q ss_pred             CCCCCCc-ccCCCCCccEEEecCcccc-ccchhhhcCC-CCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC
Q 020238           78 SKLKTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLS-GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP  154 (329)
Q Consensus        78 ~~~~~~~-~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  154 (329)
                      .+.+.+| .+..+++|++|++++|.+. .+|..+..++ +|++|++++|.+....|..+..+. |++|++++|...+..|
T Consensus       136 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~  214 (313)
T 1ogq_A          136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDAS  214 (313)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCG
T ss_pred             ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCC
Confidence            8876666 5677899999999999998 7888999998 999999999998878888888887 9999999998887888


Q ss_pred             cccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC-CcchhhcCCCCccEEEcCCCcCc-cCChhh
Q 020238          155 NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-ELPENLGQLSLLLELYLEKNNFE-RLPESI  232 (329)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l  232 (329)
                      ..+..+++|+.|++++|.+...+..      +..+++|++|++++|.++ .+|..+..+++|+.|++++|+++ .+|.. 
T Consensus       215 ~~~~~l~~L~~L~L~~N~l~~~~~~------~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-  287 (313)
T 1ogq_A          215 VLFGSDKNTQKIHLAKNSLAFDLGK------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-  287 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGGG------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred             HHHhcCCCCCEEECCCCceeeecCc------ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence            8899999999999999998754433      366899999999999999 48888999999999999999998 77754 


Q ss_pred             hcCCccceecccccccccccC
Q 020238          233 IHLSKLAYLKLSYCERLQSLP  253 (329)
Q Consensus       233 ~~~~~L~~L~l~~~~~l~~~~  253 (329)
                      ..+++|+.+++++|+.+...|
T Consensus       288 ~~l~~L~~l~l~~N~~lc~~p  308 (313)
T 1ogq_A          288 GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTT
T ss_pred             ccccccChHHhcCCCCccCCC
Confidence            889999999999998776544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.96  E-value=5e-28  Score=224.59  Aligned_cols=161  Identities=15%  Similarity=0.154  Sum_probs=131.6

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      ++++++.+|..+.  ++|++|++++|+ +...+.. .+..+++|++|++++|.+....|..+..+++|++|++++|.+..
T Consensus        13 ~~~~l~~ip~~~~--~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~   88 (549)
T 2z81_A           13 RSRSFTSIPSGLT--AAMKSLDLSFNK-ITYIGHG-DLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSS   88 (549)
T ss_dssp             TTSCCSSCCSCCC--TTCCEEECCSSC-CCEECSS-TTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCS
T ss_pred             CCCccccccccCC--CCccEEECcCCc-cCccChh-hhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCc
Confidence            5678889987664  799999999998 5554332 68999999999999999887777889999999999999998776


Q ss_pred             CCcc-cCCCCCccEEEecCccccc--cchhhhcCCCCCEEEcCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCCCccc
Q 020238           82 TLPE-ISSAGNIEVMYLNGTAIEE--LPSSIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSLPNEL  157 (329)
Q Consensus        82 ~~~~-~~~~~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~  157 (329)
                      ..+. +..+++|++|++++|.+..  .+..++.+++|++|++++|...+.++ ..+.++++|++|++++|...+..|..+
T Consensus        89 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  168 (549)
T 2z81_A           89 LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSL  168 (549)
T ss_dssp             CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             cCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhh
Confidence            6665 7788999999999999984  46778999999999999988666554 568889999999999988777666666


Q ss_pred             CCCccCcEE
Q 020238          158 GNLEALNSL  166 (329)
Q Consensus       158 ~~l~~L~~L  166 (329)
                      ..+++|+.|
T Consensus       169 ~~l~~L~~L  177 (549)
T 2z81_A          169 KSIRDIHHL  177 (549)
T ss_dssp             TTCSEEEEE
T ss_pred             hccccCceE
Confidence            554333333

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=4.4e-27  Score=219.18  Aligned_cols=126  Identities=15%  Similarity=0.078  Sum_probs=95.9

Q ss_pred             CCCCchhhhh-hhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQLW-DSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      |++|+++.++ ..+..+++|++|++++|+ +...+.. .+.++++|++|++++|.+....+..+.++++|++|++++|.+
T Consensus        35 Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l  112 (570)
T 2z63_A           35 LSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  112 (570)
T ss_dssp             CCSCCCCEECTTTTTTCSSCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             ccCCccCccChhHhhCCCCceEEECCCCc-CCccCcc-cccCchhCCEEeCcCCcCCccCHhhhcCcccccccccccccc
Confidence            4677777764 357888899999999887 5554432 678888999999998887666667788888899999988765


Q ss_pred             CCCCc-ccCCCCCccEEEecCccccc--cchhhhcCCCCCEEEcCCCCCccc
Q 020238           80 LKTLP-EISSAGNIEVMYLNGTAIEE--LPSSIECLSGLSALYLDHCKRLKS  128 (329)
Q Consensus        80 ~~~~~-~~~~~~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~~~~~  128 (329)
                      ....+ .+..+++|++|++++|.+..  +|..++.+++|++|++++|.+...
T Consensus       113 ~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~  164 (570)
T 2z63_A          113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI  164 (570)
T ss_dssp             CCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEE
T ss_pred             ccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCcccee
Confidence            54332 36677889999999888874  678888888888888888765443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.95  E-value=8.4e-27  Score=226.40  Aligned_cols=290  Identities=19%  Similarity=0.156  Sum_probs=194.1

Q ss_pred             CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      |++|+++.+ +..+..+++|++|++++|..+..++.. .+.++++|++|++++|.+....|..+..+++|++|++++|.+
T Consensus        31 Ls~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~-~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l  109 (844)
T 3j0a_A           31 LSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKE-AFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGL  109 (844)
T ss_dssp             EESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTT-TTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCC
T ss_pred             CCCCcCCccChhHCcccccCeEEeCCCCCCccccCHH-HhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCC
Confidence            356677766 456778888888888888655555332 678888888888888887777788888888888888888877


Q ss_pred             CCCCcc---cCCCCCccEEEecCcccccc--chhhhcCCCCCEEEcCCCCCcccCCccccCC--CCCcEEeccCCCCCCC
Q 020238           80 LKTLPE---ISSAGNIEVMYLNGTAIEEL--PSSIECLSGLSALYLDHCKRLKSLPSSLCKL--KSLNSIYLRWCSSLKS  152 (329)
Q Consensus        80 ~~~~~~---~~~~~~L~~L~l~~~~i~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~  152 (329)
                      .+..+.   +..+++|+.|++++|.+..+  +..++.+++|++|++++|.+....+..+..+  ++|+.|++++|.....
T Consensus       110 ~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~  189 (844)
T 3j0a_A          110 SDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSR  189 (844)
T ss_dssp             SSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCC
T ss_pred             CcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccc
Confidence            654443   66678888888888888754  3467888888888888887766666666555  6777777777766665


Q ss_pred             CCcccCCCcc------CcEEeccCccccc-cChhhhh------------------------------ccccCC--CCCcc
Q 020238          153 LPNELGNLEA------LNSLNAEGTAIRE-VPLSIVR------------------------------LNNFDG--LQNLT  193 (329)
Q Consensus       153 ~~~~~~~l~~------L~~L~l~~~~l~~-~~~~~~~------------------------------~~~~~~--~~~L~  193 (329)
                      .+..+..+.+      |+.|++++|.+.. .+..+..                              ...+.+  .++|+
T Consensus       190 ~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~  269 (844)
T 3j0a_A          190 VSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR  269 (844)
T ss_dssp             CCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCC
T ss_pred             cccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCcc
Confidence            5555554444      7888887775441 1111110                              000112  25677


Q ss_pred             EEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceecccccccccccC---CCCCCccEEeccCCC
Q 020238          194 SLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCT  268 (329)
Q Consensus       194 ~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~  268 (329)
                      .|++++|.+.++ +..+..+++|+.|++++|+++.+ +..+..+++|++|++++|......+   ..+++|+.|++++|.
T Consensus       270 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  349 (844)
T 3j0a_A          270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH  349 (844)
T ss_dssp             EEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCC
T ss_pred             EEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCC
Confidence            777777777764 44566677777777777777744 4566777777777777765432223   234677777777775


Q ss_pred             CCcCCC-CCCCCCCCCcEEEcCCCc
Q 020238          269 ALESSP-GLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       269 ~l~~~~-~~~~~~~~L~~L~i~~~~  292 (329)
                      . +.++ ..+..+++|++|++++|.
T Consensus       350 i-~~~~~~~~~~l~~L~~L~Ls~N~  373 (844)
T 3j0a_A          350 I-AIIQDQTFKFLEKLQTLDLRDNA  373 (844)
T ss_dssp             C-CCCCSSCSCSCCCCCEEEEETCC
T ss_pred             C-CccChhhhcCCCCCCEEECCCCC
Confidence            3 3333 344556677777777663

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=6.6e-27  Score=218.93  Aligned_cols=273  Identities=11%  Similarity=0.069  Sum_probs=168.3

Q ss_pred             CCCchhhhhhh-ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            2 PHGNIQQLWDS-VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         2 ~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      +++.++.+|.. +..+++|++|++++|. +...+.. .+..+++|++|++++|.+....|..+..+++|++|++++|.+.
T Consensus        59 ~~~~l~~lp~~~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  136 (597)
T 3oja_B           59 KNSTMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTY-AFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS  136 (597)
T ss_dssp             SSCEESEECTHHHHHCCCCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             eCCCCCCcCHHHHccCCCCcEEECCCCC-CCCCChH-HhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC
Confidence            45556666544 4667788888888776 4444332 5677888888888887766655666677888888888887655


Q ss_pred             CCCcc-cCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC-------
Q 020238           81 KTLPE-ISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK-------  151 (329)
Q Consensus        81 ~~~~~-~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-------  151 (329)
                      ...+. +..+++|+.|++++|.+..++ ..+..+++|++|++++|.+....   +..+++|+.|++++|....       
T Consensus       137 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L  213 (597)
T 3oja_B          137 SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAV  213 (597)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTC
T ss_pred             CCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchh
Confidence            43333 355678888888888777554 35777788888888877654321   2223333333333322211       


Q ss_pred             -----------CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEE
Q 020238          152 -----------SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELY  219 (329)
Q Consensus       152 -----------~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~  219 (329)
                                 .++..  ..++|+.|++++|.+...+ .      +..+++|+.|++++|.++++ |..+..+++|+.|+
T Consensus       214 ~~L~ls~n~l~~~~~~--~~~~L~~L~L~~n~l~~~~-~------l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  284 (597)
T 3oja_B          214 EELDASHNSINVVRGP--VNVELTILKLQHNNLTDTA-W------LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLY  284 (597)
T ss_dssp             SEEECCSSCCCEEECS--CCSCCCEEECCSSCCCCCG-G------GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEE
T ss_pred             heeeccCCcccccccc--cCCCCCEEECCCCCCCCCh-h------hccCCCCCEEECCCCccCCCCHHHhcCccCCCEEE
Confidence                       11111  1235666666666655431 1      35567777777777777763 55666777777777


Q ss_pred             cCCCcCccCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238          220 LEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       220 l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~  292 (329)
                      +++|.++.+|..+..+++|+.|++++|.. +.+|.   .+++|+.|++++|.. ..++  ...++.|+.|++++|+
T Consensus       285 Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l-~~i~~~~~~l~~L~~L~L~~N~l-~~~~--~~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          285 ISNNRLVALNLYGQPIPTLKVLDLSHNHL-LHVERNQPQFDRLENLYLDHNSI-VTLK--LSTHHTLKNLTLSHND  356 (597)
T ss_dssp             CTTSCCCEEECSSSCCTTCCEEECCSSCC-CCCGGGHHHHTTCSEEECCSSCC-CCCC--CCTTCCCSEEECCSSC
T ss_pred             CCCCCCCCCCcccccCCCCcEEECCCCCC-CccCcccccCCCCCEEECCCCCC-CCcC--hhhcCCCCEEEeeCCC
Confidence            77777776666666677777777777643 34542   236777777777763 3332  3444567777777765

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=3.1e-26  Score=208.26  Aligned_cols=227  Identities=25%  Similarity=0.338  Sum_probs=102.2

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      ++++++.++ ++..+++|++|++++|. +...+.   +..+++|++|++++|.+....+  +..+++|++|++++|.+. 
T Consensus        54 ~~~~i~~l~-~~~~l~~L~~L~Ls~n~-l~~~~~---~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-  125 (466)
T 1o6v_A           54 DRLGIKSID-GVEYLNNLTQINFSNNQ-LTDITP---LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQIT-  125 (466)
T ss_dssp             CSSCCCCCT-TGGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-
T ss_pred             CCCCCccCc-chhhhcCCCEEECCCCc-cCCchh---hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCC-
Confidence            344455553 35556666666666665 333332   4555566666665554433222  445555555555554332 


Q ss_pred             CCcccCCCCCccEEEecCccccccch--------------------hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcE
Q 020238           82 TLPEISSAGNIEVMYLNGTAIEELPS--------------------SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNS  141 (329)
Q Consensus        82 ~~~~~~~~~~L~~L~l~~~~i~~~~~--------------------~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  141 (329)
                      .++.+..+++|++|++++|.+..++.                    .+..+++|++|++++|.+.. + ..+..+++|++
T Consensus       126 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~  203 (466)
T 1o6v_A          126 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I-SVLAKLTNLES  203 (466)
T ss_dssp             CCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-GGGGGCTTCSE
T ss_pred             CChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-C-hhhccCCCCCE
Confidence            22334444555555555444432211                    13344555555555544322 1 12334444444


Q ss_pred             EeccCCCCCCCCC--------------------cccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCC
Q 020238          142 IYLRWCSSLKSLP--------------------NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG  201 (329)
Q Consensus       142 L~l~~~~~~~~~~--------------------~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  201 (329)
                      |++++|......+                    ..+..+++|+.|++++|.+...+.       +..+++|+.|++++|.
T Consensus       204 L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-------~~~l~~L~~L~l~~n~  276 (466)
T 1o6v_A          204 LIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-------LSGLTKLTELKLGANQ  276 (466)
T ss_dssp             EECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSC
T ss_pred             EEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-------hhcCCCCCEEECCCCc
Confidence            4444433322211                    123333444444444444333221       2334445555555554


Q ss_pred             CCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238          202 ITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       202 l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~  247 (329)
                      +++++. +..+++|+.|++++|+++.++. +..+++|+.|++++|.
T Consensus       277 l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~L~~n~  320 (466)
T 1o6v_A          277 ISNISP-LAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFNN  320 (466)
T ss_dssp             CCCCGG-GTTCTTCSEEECCSSCCSCCGG-GGGCTTCSEEECCSSC
T ss_pred             cCcccc-ccCCCccCeEEcCCCcccCchh-hcCCCCCCEEECcCCc
Confidence            444433 4444555555555554444332 3444555555555443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.95  E-value=8e-26  Score=196.45  Aligned_cols=260  Identities=20%  Similarity=0.182  Sum_probs=214.5

Q ss_pred             CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEE
Q 020238           18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMY   96 (329)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~   96 (329)
                      +++.++++++. +...|.  .+  .++++.|++++|.+....+..+..+++|++|++++|.+....| .+..+++|++|+
T Consensus        32 ~l~~l~~~~~~-l~~lp~--~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (330)
T 1xku_A           32 HLRVVQCSDLG-LEKVPK--DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY  106 (330)
T ss_dssp             ETTEEECTTSC-CCSCCC--SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             CCeEEEecCCC-ccccCc--cC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence            79999999876 666665  23  3789999999998777666678899999999999988776645 567779999999


Q ss_pred             ecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC--CCCcccCCCccCcEEeccCcccc
Q 020238           97 LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK--SLPNELGNLEALNSLNAEGTAIR  174 (329)
Q Consensus        97 l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~  174 (329)
                      +++|.+..+|..+.  ++|++|++++|.+....+..+.++++|+.|++++|....  ..+..+..+++|+.|++++|.+.
T Consensus       107 Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  184 (330)
T 1xku_A          107 LSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  184 (330)
T ss_dssp             CCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             CCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence            99999998887654  899999999988776666678899999999999987753  55677889999999999999999


Q ss_pred             ccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceeccccccccccc
Q 020238          175 EVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSL  252 (329)
Q Consensus       175 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~  252 (329)
                      .+|...        .++|++|++++|.++++ +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|. ++.+
T Consensus       185 ~l~~~~--------~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l  255 (330)
T 1xku_A          185 TIPQGL--------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKV  255 (330)
T ss_dssp             SCCSSC--------CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSC-CSSC
T ss_pred             cCCccc--------cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCc-CccC
Confidence            887544        37999999999999985 567889999999999999999665 578899999999999985 5577


Q ss_pred             CC---CCCCccEEeccCCCCCcCCCCCCC-------CCCCCcEEEcCCCccc
Q 020238          253 PK---LPCNLSELDAHHCTALESSPGLVF-------PSRDPQYFDLRNNLKL  294 (329)
Q Consensus       253 ~~---~~~~L~~L~l~~c~~l~~~~~~~~-------~~~~L~~L~i~~~~~l  294 (329)
                      |.   .+++|++|++++|. ++.++...+       ....++.+++++++.-
T Consensus       256 p~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          256 PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCccc
Confidence            74   34789999999998 444543333       2357889999999753

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=2.5e-26  Score=208.94  Aligned_cols=260  Identities=20%  Similarity=0.229  Sum_probs=177.5

Q ss_pred             CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccE
Q 020238           15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEV   94 (329)
Q Consensus        15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~   94 (329)
                      .+++++.|++.++. +...+   .+..+++|++|++++|.+... +. +..+++|++|++++|.+....+ +..+++|++
T Consensus        44 ~l~~l~~L~l~~~~-i~~l~---~~~~l~~L~~L~Ls~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLG-IKSID---GVEYLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIADITP-LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSC-CCCCT---TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCE
T ss_pred             HhccccEEecCCCC-CccCc---chhhhcCCCEEECCCCccCCc-hh-hhccccCCEEECCCCccccChh-hcCCCCCCE
Confidence            36789999999987 55555   477899999999999886554 43 8899999999999987665444 888899999


Q ss_pred             EEecCccccccchhhhcCCCCCEEEcCCCCCcccCC--------------------ccccCCCCCcEEeccCCCCCCCCC
Q 020238           95 MYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP--------------------SSLCKLKSLNSIYLRWCSSLKSLP  154 (329)
Q Consensus        95 L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~--------------------~~~~~l~~L~~L~l~~~~~~~~~~  154 (329)
                      |++++|.+..++. +..+++|++|++++|.+.. ++                    ..+.++++|+.|++++|.... + 
T Consensus       117 L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-  192 (466)
T 1o6v_A          117 LTLFNNQITDIDP-LKNLTNLNRLELSSNTISD-ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD-I-  192 (466)
T ss_dssp             EECCSSCCCCCGG-GTTCTTCSEEEEEEEEECC-CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCC-C-
T ss_pred             EECCCCCCCCChH-HcCCCCCCEEECCCCccCC-ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCC-C-
Confidence            9999999998765 8899999999999986533 11                    125677889999999976543 3 


Q ss_pred             cccCCCccCcEEeccCccccccChhhhh----------------ccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEE
Q 020238          155 NELGNLEALNSLNAEGTAIREVPLSIVR----------------LNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLEL  218 (329)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~----------------~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L  218 (329)
                      ..+..+++|+.|++++|.+...+. +..                +..+..+++|+.|++++|.+++++. +..+++|+.|
T Consensus       193 ~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L  270 (466)
T 1o6v_A          193 SVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL  270 (466)
T ss_dssp             GGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             hhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchh-hhcCCCCCEE
Confidence            346788889999998888775543 110                0113344555666666665555443 5556666666


Q ss_pred             EcCCCcCccCChhhhcCCccceecccccccccccC--CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCC
Q 020238          219 YLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLP--KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN  291 (329)
Q Consensus       219 ~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~  291 (329)
                      ++++|.++.++. +..+++|+.|++++|.. +.++  ..+++|+.|++++|...+ ++. ...+++|++|++++|
T Consensus       271 ~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l-~~~~~~~~l~~L~~L~L~~n~l~~-~~~-~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          271 KLGANQISNISP-LAGLTALTNLELNENQL-EDISPISNLKNLTYLTLYFNNISD-ISP-VSSLTKLQRLFFYNN  341 (466)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCSEEECCSSCC-SCCGGGGGCTTCSEEECCSSCCSC-CGG-GGGCTTCCEEECCSS
T ss_pred             ECCCCccCcccc-ccCCCccCeEEcCCCcc-cCchhhcCCCCCCEEECcCCcCCC-chh-hccCccCCEeECCCC
Confidence            666666665554 56666777777766543 2222  234566666666665332 222 334455666666555

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=1.8e-26  Score=216.05  Aligned_cols=271  Identities=18%  Similarity=0.126  Sum_probs=213.5

Q ss_pred             CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCcc
Q 020238           15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIE   93 (329)
Q Consensus        15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~   93 (329)
                      .+.+++.++++++. +...|.. .+..+++|+.|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+
T Consensus        49 ~l~~l~~l~l~~~~-l~~lp~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  126 (597)
T 3oja_B           49 TLNNQKIVTFKNST-MRKLPAA-LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT  126 (597)
T ss_dssp             GGCCCSEEEESSCE-ESEECTH-HHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             cCCCceEEEeeCCC-CCCcCHH-HHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCC
Confidence            45789999999987 6666653 578899999999999998777777899999999999999987766554 56779999


Q ss_pred             EEEecCccccccchh-hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238           94 VMYLNGTAIEELPSS-IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA  172 (329)
Q Consensus        94 ~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  172 (329)
                      .|++++|.+..+|.. ++.+++|++|++++|.+....+..+..+++|+.|++++|..... +  +..+++|+.+++++|.
T Consensus       127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--~~~l~~L~~L~l~~n~  203 (597)
T 3oja_B          127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV-D--LSLIPSLFHANVSYNL  203 (597)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC-C--GGGCTTCSEEECCSSC
T ss_pred             EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc-C--hhhhhhhhhhhcccCc
Confidence            999999999988876 58999999999999988777777899999999999999876543 2  3334555555555554


Q ss_pred             ccccC--hhhhhccc---------cCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccC-ChhhhcCCccce
Q 020238          173 IREVP--LSIVRLNN---------FDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAY  240 (329)
Q Consensus       173 l~~~~--~~~~~~~~---------~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~  240 (329)
                      +..++  ..+..+..         -...++|+.|++++|.+++. ..+..+++|+.|++++|.++.+ |..+..+++|+.
T Consensus       204 l~~l~~~~~L~~L~ls~n~l~~~~~~~~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  282 (597)
T 3oja_B          204 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLER  282 (597)
T ss_dssp             CSEEECCTTCSEEECCSSCCCEEECSCCSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCE
T ss_pred             cccccCCchhheeeccCCcccccccccCCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCE
Confidence            44221  11100000         11246899999999999985 5688899999999999999854 688999999999


Q ss_pred             ecccccccccccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcc
Q 020238          241 LKLSYCERLQSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLK  293 (329)
Q Consensus       241 L~l~~~~~l~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~  293 (329)
                      |++++|. ++.+|   ..+++|+.|++++|. +..+|..+..+++|++|++++|.-
T Consensus       283 L~Ls~N~-l~~l~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~l~~L~~L~L~~N~l  336 (597)
T 3oja_B          283 LYISNNR-LVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNSI  336 (597)
T ss_dssp             EECTTSC-CCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSCC
T ss_pred             EECCCCC-CCCCCcccccCCCCcEEECCCCC-CCccCcccccCCCCCEEECCCCCC
Confidence            9999976 44455   346899999999997 457777777788999999999853

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=4.5e-26  Score=198.19  Aligned_cols=274  Identities=19%  Similarity=0.179  Sum_probs=214.3

Q ss_pred             CCchhhhhhhcc-CCC-----CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecC
Q 020238            3 HGNIQQLWDSVQ-HNG-----KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWG   76 (329)
Q Consensus         3 ~~~~~~l~~~~~-~~~-----~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~   76 (329)
                      .+.++.+|..+. .||     +++.++++++. +...|.  .+  .++|+.|++++|.+....+..+.++++|++|++++
T Consensus        13 ~~~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~-l~~ip~--~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~   87 (332)
T 2ft3_A           13 IPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLG-LKAVPK--EI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVN   87 (332)
T ss_dssp             ------------CCCCSSCEEETTEEECCSSC-CSSCCS--CC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCccccCCCcccCCCCCCCcccCCEEECCCCC-ccccCC--CC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCC
Confidence            455667765442 333     79999999887 666765  23  47999999999987776677899999999999999


Q ss_pred             CCCCCCCc-ccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC--CC
Q 020238           77 CSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK--SL  153 (329)
Q Consensus        77 ~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~  153 (329)
                      |.+....+ .+..+++|++|++++|.+..+|..+.  ++|++|++++|.+....+..+..+++|+.|++++|....  ..
T Consensus        88 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  165 (332)
T 2ft3_A           88 NKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFE  165 (332)
T ss_dssp             SCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSC
T ss_pred             CccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCC
Confidence            98765545 56777999999999999998887654  899999999988766555668899999999999987753  55


Q ss_pred             CcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc-hhhcCCCCccEEEcCCCcCccCC-hh
Q 020238          154 PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP-ENLGQLSLLLELYLEKNNFERLP-ES  231 (329)
Q Consensus       154 ~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~i~~~~-~~  231 (329)
                      +..+..+ +|+.|++++|.+..+|..+        .++|++|++++|.+++++ ..+..+++|+.|++++|+++.++ ..
T Consensus       166 ~~~~~~l-~L~~L~l~~n~l~~l~~~~--------~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~  236 (332)
T 2ft3_A          166 PGAFDGL-KLNYLRISEAKLTGIPKDL--------PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS  236 (332)
T ss_dssp             TTSSCSC-CCSCCBCCSSBCSSCCSSS--------CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG
T ss_pred             cccccCC-ccCEEECcCCCCCccCccc--------cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH
Confidence            6677777 9999999999999887654        378999999999999865 57888999999999999999776 57


Q ss_pred             hhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCC-C------CCCCcEEEcCCCccc
Q 020238          232 IIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVF-P------SRDPQYFDLRNNLKL  294 (329)
Q Consensus       232 l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~-~------~~~L~~L~i~~~~~l  294 (329)
                      +..+++|+.|++++|. ++.+|.   .+++|+.|++++|.. +.++...+ .      ...|+.|++++|+..
T Consensus       237 ~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~l-~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          237 LSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             GGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSCC-CBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             hhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCCC-CccChhHccccccccccccccceEeecCccc
Confidence            8999999999999975 557775   347899999999874 44443222 2      356889999999753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.95  E-value=2.1e-26  Score=214.57  Aligned_cols=139  Identities=22%  Similarity=0.206  Sum_probs=97.7

Q ss_pred             cCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCc--cCChhhh
Q 020238          157 LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFE--RLPESII  233 (329)
Q Consensus       157 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~--~~~~~l~  233 (329)
                      +..+++|+.|++++|.+...+..    ..+..+++|+.|++++|.+.+ .+..+..+++|+.|++++|.++  .+|..+.
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~  467 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEF----SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT  467 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTS----CTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT
T ss_pred             ccccCCCCEEEccCCccccccch----hhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhh
Confidence            44455555555555554433220    115667888888888888776 5556778888999999998886  5777888


Q ss_pred             cCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchhHH
Q 020238          234 HLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNEI  299 (329)
Q Consensus       234 ~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~~~  299 (329)
                      .+++|+.|++++|......|.   .+++|++|++++|...+..+..+..+++|++|++++|+--.+...
T Consensus       468 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          468 ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             cccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            889999999998865544453   347899999999875444445567788899999999876655443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=1.2e-26  Score=201.23  Aligned_cols=218  Identities=27%  Similarity=0.350  Sum_probs=135.4

Q ss_pred             CcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccC
Q 020238           67 EFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRW  146 (329)
Q Consensus        67 ~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~  146 (329)
                      ..+++|++++|.+....+.+..+++|++|++++|.+..+|..++.+++|++|++++|.+. .+|..+..+++|++|++++
T Consensus        81 ~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~  159 (328)
T 4fcg_A           81 PGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRA  159 (328)
T ss_dssp             TTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEE
T ss_pred             cceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCC
Confidence            344444444443332111233334444444444444444444555555555555554433 4444455555555555555


Q ss_pred             CCCCCCCCccc---------CCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccE
Q 020238          147 CSSLKSLPNEL---------GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLE  217 (329)
Q Consensus       147 ~~~~~~~~~~~---------~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~  217 (329)
                      |+..+.+|..+         .++++|+.|++++|.+..+|..+      ..+++|++|++++|.++++|..+..+++|+.
T Consensus       160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l------~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~  233 (328)
T 4fcg_A          160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI------ANLQNLKSLKIRNSPLSALGPAIHHLPKLEE  233 (328)
T ss_dssp             ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGG------GGCTTCCEEEEESSCCCCCCGGGGGCTTCCE
T ss_pred             CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhh------cCCCCCCEEEccCCCCCcCchhhccCCCCCE
Confidence            55554444433         33677777777777777666543      4467777777777777777777777777888


Q ss_pred             EEcCCCcCc-cCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCC
Q 020238          218 LYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN  291 (329)
Q Consensus       218 L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~  291 (329)
                      |++++|++. .+|..+..+++|+.|++++|+..+.+|.   .+++|+.|++++|+.++.+|..+..+++++.+++...
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            888777655 6666777777788888887777777764   3467788888888877888877777777888777653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=4.2e-27  Score=206.43  Aligned_cols=260  Identities=15%  Similarity=0.101  Sum_probs=207.9

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      ++++++.+|..+.  ++|++|++++|. +...+.. .+.++++|++|++++|.+....+..+.++++|++|++++|.+..
T Consensus        39 ~~~~l~~iP~~~~--~~L~~L~l~~n~-i~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~  114 (353)
T 2z80_A           39 SSGSLNSIPSGLT--EAVKSLDLSNNR-ITYISNS-DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN  114 (353)
T ss_dssp             CSTTCSSCCTTCC--TTCCEEECTTSC-CCEECTT-TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS
T ss_pred             CCCCccccccccc--ccCcEEECCCCc-CcccCHH-HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc
Confidence            5678888887654  589999999988 5555542 67889999999999998777767788899999999999987765


Q ss_pred             CCcc-cCCCCCccEEEecCccccccch--hhhcCCCCCEEEcCCCCCccc-CCccccCCCCCcEEeccCCCCCCCCCccc
Q 020238           82 TLPE-ISSAGNIEVMYLNGTAIEELPS--SIECLSGLSALYLDHCKRLKS-LPSSLCKLKSLNSIYLRWCSSLKSLPNEL  157 (329)
Q Consensus        82 ~~~~-~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~  157 (329)
                      ..+. +..+++|++|++++|.+..++.  .+..+++|++|++++|...+. .+..+.++++|++|++++|......|..+
T Consensus       115 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l  194 (353)
T 2z80_A          115 LSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL  194 (353)
T ss_dssp             CCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT
T ss_pred             CCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH
Confidence            4444 6777999999999999998876  688899999999999854444 45678889999999999988877778889


Q ss_pred             CCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch----hhcCCCCccEEEcCCCcCc-----cC
Q 020238          158 GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE----NLGQLSLLLELYLEKNNFE-----RL  228 (329)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~i~-----~~  228 (329)
                      ..+++|+.|++++|.+..++...     +..+++|+.|++++|.+++++.    .....+.++.++++++.++     .+
T Consensus       195 ~~l~~L~~L~l~~n~l~~~~~~~-----~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l  269 (353)
T 2z80_A          195 KSIQNVSHLILHMKQHILLLEIF-----VDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQV  269 (353)
T ss_dssp             TTCSEEEEEEEECSCSTTHHHHH-----HHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHH
T ss_pred             hccccCCeecCCCCccccchhhh-----hhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhh
Confidence            99999999999999988776554     3457899999999998887432    1234667888888888775     46


Q ss_pred             ChhhhcCCccceecccccccccccCC----CCCCccEEeccCCCCCc
Q 020238          229 PESIIHLSKLAYLKLSYCERLQSLPK----LPCNLSELDAHHCTALE  271 (329)
Q Consensus       229 ~~~l~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~~l~  271 (329)
                      |..+..+++|+.|++++|. ++.+|.    .+++|++|++++|+...
T Consensus       270 ~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          270 MKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             HHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             HHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            7778899999999999975 456763    35789999999998543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=9.7e-26  Score=214.42  Aligned_cols=287  Identities=20%  Similarity=0.211  Sum_probs=184.8

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      ++.+++++|..+.  +++++|++++|. +...+.. .+.++++|++|++++|.+....|..+.++++|++|++++|.+..
T Consensus        12 s~~~L~~ip~~~~--~~l~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~   87 (680)
T 1ziw_A           12 SHLKLTQVPDDLP--TNITVLNLTHNQ-LRRLPAA-NFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ   87 (680)
T ss_dssp             CSSCCSSCCSCSC--TTCSEEECCSSC-CCCCCGG-GGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC
T ss_pred             CCCCccccccccC--CCCcEEECCCCC-CCCcCHH-HHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc
Confidence            4556777765553  577888888776 4444432 56777778888887777666666667777778888887766543


Q ss_pred             CCc-ccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCccc--
Q 020238           82 TLP-EISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL--  157 (329)
Q Consensus        82 ~~~-~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--  157 (329)
                      ..+ .+..+++|++|++++|.+..++ ..++.+++|++|++++|.+....+..+.++++|++|++++|......+..+  
T Consensus        88 l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  167 (680)
T 1ziw_A           88 LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDI  167 (680)
T ss_dssp             CCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGG
T ss_pred             cChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhc
Confidence            333 3566677778888777777555 456777777777777777666556666677777777777765544333332  


Q ss_pred             CCCccCcEEeccCccccccChhh-hhcc---------------------------------------------ccCCC--
Q 020238          158 GNLEALNSLNAEGTAIREVPLSI-VRLN---------------------------------------------NFDGL--  189 (329)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~~~~~-~~~~---------------------------------------------~~~~~--  189 (329)
                      ..+++|+.|++++|.+..++... ..+.                                             .+..+  
T Consensus       168 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~  247 (680)
T 1ziw_A          168 FANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKW  247 (680)
T ss_dssp             GTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGG
T ss_pred             cccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCc
Confidence            23456666776666655433211 0000                                             02222  


Q ss_pred             CCccEEEcCCCCCCCcc-hhhcCCCCccEEEcCCCcCcc-CChhhhcCCccceeccccccccc-----ccC-------CC
Q 020238          190 QNLTSLYLTDCGITELP-ENLGQLSLLLELYLEKNNFER-LPESIIHLSKLAYLKLSYCERLQ-----SLP-------KL  255 (329)
Q Consensus       190 ~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~i~~-~~~~l~~~~~L~~L~l~~~~~l~-----~~~-------~~  255 (329)
                      ++|+.|++++|.+++++ ..+..+++|+.|++++|+++. .+..+..+++|+.|++++|....     .+|       ..
T Consensus       248 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~  327 (680)
T 1ziw_A          248 TNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW  327 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred             CCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence            23777777777777643 456777788888888877773 34567777777777777653221     122       23


Q ss_pred             CCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238          256 PCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       256 ~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~  292 (329)
                      +++|++|++++|...+..+..+..+++|++|++++|.
T Consensus       328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  364 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSF  364 (680)
T ss_dssp             CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred             CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCc
Confidence            5788888888887655555666777888888888874

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2e-26  Score=198.14  Aligned_cols=220  Identities=22%  Similarity=0.242  Sum_probs=105.2

Q ss_pred             ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC---CcccCCCCCccEEEecCccccccchhhhcCCCCCEEE
Q 020238           43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT---LPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALY  119 (329)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~  119 (329)
                      ++|++|++++|.+...-+..+..+++|++|++++|.+...   ...+...++|++|++++|.+..++..+..+++|++|+
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~  107 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLD  107 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEE
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEE
Confidence            3455555555443321112234455555555555443211   1122333455555555555554444455555555555


Q ss_pred             cCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccc--cChhhhhccccCCCCCccEEE
Q 020238          120 LDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIRE--VPLSIVRLNNFDGLQNLTSLY  196 (329)
Q Consensus       120 l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~--~~~~~~~~~~~~~~~~L~~L~  196 (329)
                      +++|.+....+ ..+..+++|++|++++|......+..+..+++|+.|++++|.+..  .+..      +..+++|+.|+
T Consensus       108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~------~~~l~~L~~L~  181 (306)
T 2z66_A          108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI------FTELRNLTFLD  181 (306)
T ss_dssp             CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSC------CTTCTTCCEEE
T ss_pred             CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhH------HhhCcCCCEEE
Confidence            55544333222 234455555555555554444444445555555555555555442  2211      34455555555


Q ss_pred             cCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccccccccCC----CCCCccEEeccCCC
Q 020238          197 LTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLPK----LPCNLSELDAHHCT  268 (329)
Q Consensus       197 l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~----~~~~L~~L~l~~c~  268 (329)
                      +++|.++++ +..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|...+..+.    .+++|+.|++++|+
T Consensus       182 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred             CCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence            555555553 334555555555555555555443 2445555555555555543332221    11355566665555

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.94  E-value=1.1e-25  Score=203.45  Aligned_cols=249  Identities=17%  Similarity=0.131  Sum_probs=197.7

Q ss_pred             ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCc
Q 020238           13 VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNI   92 (329)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L   92 (329)
                      +..+++|++|++++|. +...+   .+..+++|++|++++|.+.+ ++  +..+++|++|++++|.+.. ++ +..+++|
T Consensus        38 ~~~l~~L~~L~Ls~n~-l~~~~---~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~-~~-~~~l~~L  108 (457)
T 3bz5_A           38 EEQLATLTSLDCHNSS-ITDMT---GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN-LD-VTPLTKL  108 (457)
T ss_dssp             HHHHTTCCEEECCSSC-CCCCT---TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC-CC-CTTCTTC
T ss_pred             hhHcCCCCEEEccCCC-cccCh---hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce-ee-cCCCCcC
Confidence            4568999999999997 66554   57889999999999998655 44  7889999999999988654 33 7778999


Q ss_pred             cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238           93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA  172 (329)
Q Consensus        93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  172 (329)
                      ++|++++|.+..++  ++.+++|++|++++|.+.. ++  +..+++|++|++++|...+.+  .+..+++|+.|++++|.
T Consensus       109 ~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~  181 (457)
T 3bz5_A          109 TYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK  181 (457)
T ss_dssp             CEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC
T ss_pred             CEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc
Confidence            99999999999875  7899999999999988655 32  778999999999998777666  47789999999999999


Q ss_pred             ccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceeccccccccccc
Q 020238          173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSL  252 (329)
Q Consensus       173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~  252 (329)
                      ++.++        +..+++|+.|++++|.+++++  +..+++|+.|++++|+++.+|  +..+++|+.|++++|..- .+
T Consensus       182 l~~l~--------l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~-~~  248 (457)
T 3bz5_A          182 ITELD--------VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLT-EL  248 (457)
T ss_dssp             CCCCC--------CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCS-CC
T ss_pred             cceec--------cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCC-Cc
Confidence            98875        466899999999999999974  788999999999999999987  788999999999997643 33


Q ss_pred             C-CCCCCc----------cEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238          253 P-KLPCNL----------SELDAHHCTALESSPGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       253 ~-~~~~~L----------~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~  292 (329)
                      + ..+++|          +.|++++|..++.+|  ...+++|+.|++++|.
T Consensus       249 ~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~  297 (457)
T 3bz5_A          249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNT  297 (457)
T ss_dssp             CCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCT
T ss_pred             CHHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCc
Confidence            3 333433          344444444443333  1234455555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.94  E-value=4.7e-25  Score=209.67  Aligned_cols=239  Identities=21%  Similarity=0.176  Sum_probs=124.2

Q ss_pred             CCCCchhhh-hhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQL-WDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      |++++++.+ +..+..+++|++|++++|. +...+.. .+.++++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        56 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l  133 (680)
T 1ziw_A           56 VGFNTISKLEPELCQKLPMLKVLNLQHNE-LSQLSDK-TFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGL  133 (680)
T ss_dssp             CCSSCCCCCCTTHHHHCTTCCEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCC
T ss_pred             CCCCccCccCHHHHhcccCcCEEECCCCc-cCccChh-hhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcc
Confidence            345556655 3445667777777777765 4444432 466677777777777665544445566677777777777665


Q ss_pred             CCCCc-ccCCCCCccEEEecCccccccchh-h--hcCCCCCEEEcCCCCCcccC--------------------------
Q 020238           80 LKTLP-EISSAGNIEVMYLNGTAIEELPSS-I--ECLSGLSALYLDHCKRLKSL--------------------------  129 (329)
Q Consensus        80 ~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~-~--~~l~~L~~L~l~~~~~~~~~--------------------------  129 (329)
                      ....+ .+..+++|++|++++|.+..++.. +  ..+++|++|++++|.+....                          
T Consensus       134 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~  213 (680)
T 1ziw_A          134 SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTE  213 (680)
T ss_dssp             SCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHH
T ss_pred             cccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHH
Confidence            54433 244456666666666665544322 1  13355555555555433322                          


Q ss_pred             -------------------------CccccCCC--CCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhh
Q 020238          130 -------------------------PSSLCKLK--SLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVR  182 (329)
Q Consensus       130 -------------------------~~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  182 (329)
                                               +..+..++  +|++|++++|......+..+..+++|+.|++++|.+...+...  
T Consensus       214 ~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--  291 (680)
T 1ziw_A          214 KLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS--  291 (680)
T ss_dssp             HHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT--
T ss_pred             HHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh--
Confidence                                     22232222  2555555555544444445555666666666666555433221  


Q ss_pred             ccccCCCCCccEEEcCCCCCC------Ccch----hhcCCCCccEEEcCCCcCccCC-hhhhcCCccceeccccc
Q 020238          183 LNNFDGLQNLTSLYLTDCGIT------ELPE----NLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYC  246 (329)
Q Consensus       183 ~~~~~~~~~L~~L~l~~~~l~------~~~~----~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~  246 (329)
                         +..+++|+.|+++++...      .+|.    .+..+++|+.|++++|.++.++ ..+..+++|++|++++|
T Consensus       292 ---~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  363 (680)
T 1ziw_A          292 ---LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS  363 (680)
T ss_dssp             ---TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTC
T ss_pred             ---hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCC
Confidence               233444444444433211      1111    2344555555555555555333 33455555555555554

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=8.9e-26  Score=195.76  Aligned_cols=216  Identities=28%  Similarity=0.412  Sum_probs=140.7

Q ss_pred             ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccchhhhcCCCCCEEEcC
Q 020238           43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLD  121 (329)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~  121 (329)
                      ++++.|++++|.+. .+|..+..+++|++|++++|.+. .+| .+..+++|++|++++|.+..+|..+..+++|++|+++
T Consensus        81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~  158 (328)
T 4fcg_A           81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR  158 (328)
T ss_dssp             TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred             cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence            45666666665533 45555555666666666665544 333 3444566666666666666666666667777777777


Q ss_pred             CCCCcccCCcccc---------CCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCc
Q 020238          122 HCKRLKSLPSSLC---------KLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNL  192 (329)
Q Consensus       122 ~~~~~~~~~~~~~---------~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L  192 (329)
                      +|...+.+|..+.         ++++|++|++++|... .+|..+..+++|+.|++++|.+..++..+      ..+++|
T Consensus       159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l------~~l~~L  231 (328)
T 4fcg_A          159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAI------HHLPKL  231 (328)
T ss_dssp             EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGG------GGCTTC
T ss_pred             CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhh------ccCCCC
Confidence            7666666655443         3777777777776554 66666777777777777777777666543      456777


Q ss_pred             cEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCc-cCChhhhcCCccceecccccccccccCCC---CCCccEEeccCC
Q 020238          193 TSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLPKL---PCNLSELDAHHC  267 (329)
Q Consensus       193 ~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~~~---~~~L~~L~l~~c  267 (329)
                      +.|++++|.+.+ +|..+..+++|+.|++++|++. .+|..+..+++|+.|++++|+..+.+|+.   +++|+.+.+..+
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            777777776654 6666777777777777777554 66767777777777777777777777743   355666655543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.2e-27  Score=206.70  Aligned_cols=281  Identities=15%  Similarity=0.061  Sum_probs=213.8

Q ss_pred             CCCCchhhhhhh-ccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQLWDS-VQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      ++++++.+.+.. +..+++|++|++++|. +...+. ..+..+++|++|++++|.+....+  +..+++|++|++++|.+
T Consensus        17 ls~~~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l   92 (317)
T 3o53_A           17 VTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISA-ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV   92 (317)
T ss_dssp             CCTTTHHHHHHHHHTTGGGCSEEECTTSC-CCCCCH-HHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEE
T ss_pred             ccccchhhhHHHHhccCCCCCEEECcCCc-cCcCCH-HHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcc
Confidence            356677766544 4677899999999987 555442 267889999999999988765443  78899999999999864


Q ss_pred             CCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCccc-C
Q 020238           80 LKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNEL-G  158 (329)
Q Consensus        80 ~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~  158 (329)
                      .. +   ...++|+.|++++|.+..++..  .+++|++|++++|.+....+..+..+++|++|++++|......+..+ .
T Consensus        93 ~~-l---~~~~~L~~L~l~~n~l~~~~~~--~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  166 (317)
T 3o53_A           93 QE-L---LVGPSIETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAA  166 (317)
T ss_dssp             EE-E---EECTTCCEEECCSSCCSEEEEC--CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGG
T ss_pred             cc-c---cCCCCcCEEECCCCccCCcCcc--ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhh
Confidence            42 2   2348899999999998866543  47889999999988776666678888999999999987776555555 4


Q ss_pred             CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCcc
Q 020238          159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKL  238 (329)
Q Consensus       159 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L  238 (329)
                      .+++|+.|++++|.+..++.       ...+++|+.|++++|.+++++..+..+++|+.|++++|+++.+|..+..+++|
T Consensus       167 ~l~~L~~L~L~~N~l~~~~~-------~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~~~~~~l~~L  239 (317)
T 3o53_A          167 SSDTLEHLNLQYNFIYDVKG-------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL  239 (317)
T ss_dssp             GTTTCCEEECTTSCCCEEEC-------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred             ccCcCCEEECCCCcCccccc-------ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchhhHhhcCCCC
Confidence            68899999999999887643       23478999999999999998888888999999999999999989888889999


Q ss_pred             ceecccccccc-cccC---CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchhH
Q 020238          239 AYLKLSYCERL-QSLP---KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRNE  298 (329)
Q Consensus       239 ~~L~l~~~~~l-~~~~---~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~~  298 (329)
                      +.|++++|+.. ..++   ..+++|+.+++++|..++.............+..-..|..++...
T Consensus       240 ~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~~~~~~~~~~~~~cc~~l~~~~  303 (317)
T 3o53_A          240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPF  303 (317)
T ss_dssp             CEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCCCSSTTCEEETTEEEBCCTTTH
T ss_pred             CEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchhccCCCceecccceeeccCChhH
Confidence            99999998765 3333   345678888888777665444433334445555555676665533

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.94  E-value=4.2e-25  Score=208.14  Aligned_cols=115  Identities=25%  Similarity=0.245  Sum_probs=85.9

Q ss_pred             CCCccEEEcCCCCCCC--cchhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceecccccccccccC----CCCCCccE
Q 020238          189 LQNLTSLYLTDCGITE--LPENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSE  261 (329)
Q Consensus       189 ~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~  261 (329)
                      ++.++.|++++|.+.+  .|..+..+++|+.|++++|+++.+ |..+.++++|++|++++|. ++.++    ..+++|+.
T Consensus       468 ~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          468 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC-CCBCCCGGGTTCTTCCE
T ss_pred             chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCc-CCCCChhHHhCCCCCCE
Confidence            3455555555554332  445667788999999999999865 5778899999999999975 44454    34579999


Q ss_pred             EeccCCCCCcCCCCCCCCC-CCCcEEEcCCCcccchhHHHHHhh
Q 020238          262 LDAHHCTALESSPGLVFPS-RDPQYFDLRNNLKLDRNEIREILE  304 (329)
Q Consensus       262 L~l~~c~~l~~~~~~~~~~-~~L~~L~i~~~~~l~~~~~~~~~~  304 (329)
                      |++++|...+..+..+... ++|++|++++|+--.+.....+..
T Consensus       547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~  590 (635)
T 4g8a_A          547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQ  590 (635)
T ss_dssp             EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHH
T ss_pred             EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHH
Confidence            9999998666666666665 579999999999888887666544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.94  E-value=3.7e-25  Score=214.91  Aligned_cols=285  Identities=18%  Similarity=0.110  Sum_probs=221.7

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCccc-CccccCCCcccEEeecCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRIL-PPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      ++.+++++|.   -.+++++|++++|. +...... .+.++++|++|++++|.....+ |..+.++++|++|++++|.+.
T Consensus        12 s~~~L~~vP~---lp~~l~~LdLs~N~-i~~i~~~-~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~   86 (844)
T 3j0a_A           12 RFCNLTQVPQ---VLNTTERLLLSFNY-IRTVTAS-SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY   86 (844)
T ss_dssp             SCCCSSCCCS---SCTTCCEEEEESCC-CCEECSS-SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC
T ss_pred             cCCCCCCCCC---CCCCcCEEECCCCc-CCccChh-HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc
Confidence            4678888886   45799999999998 4444332 7899999999999999766655 778999999999999999877


Q ss_pred             CCCc-ccCCCCCccEEEecCccccc-cchh--hhcCCCCCEEEcCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCCCc
Q 020238           81 KTLP-EISSAGNIEVMYLNGTAIEE-LPSS--IECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSLPN  155 (329)
Q Consensus        81 ~~~~-~~~~~~~L~~L~l~~~~i~~-~~~~--~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~  155 (329)
                      ...| .+..+++|++|++++|.+.. ++..  +..+++|++|++++|.+....+ ..+.++++|++|++++|......+.
T Consensus        87 ~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~  166 (844)
T 3j0a_A           87 FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEH  166 (844)
T ss_dssp             EECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSG
T ss_pred             ccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHH
Confidence            6655 56777999999999999984 4544  8899999999999998766544 5689999999999999888877777


Q ss_pred             ccCCC--ccCcEEeccCcccccc-Chhhhhccc-cCCCCCccEEEcCCCCCCC-cchhh---------------------
Q 020238          156 ELGNL--EALNSLNAEGTAIREV-PLSIVRLNN-FDGLQNLTSLYLTDCGITE-LPENL---------------------  209 (329)
Q Consensus       156 ~~~~l--~~L~~L~l~~~~l~~~-~~~~~~~~~-~~~~~~L~~L~l~~~~l~~-~~~~~---------------------  209 (329)
                      .+..+  ++|+.|++++|.+... +..+..... +. ...|+.|++++|.++. .+..+                     
T Consensus       167 ~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~-~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~  245 (844)
T 3j0a_A          167 ELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFR-NMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGA  245 (844)
T ss_dssp             GGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTT-TCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBC
T ss_pred             HcccccCCccceEECCCCccccccccchhhcCCccc-cCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccc
Confidence            77766  7899999999988742 222211110 11 1249999999996653 22111                     


Q ss_pred             ---------------cC--CCCccEEEcCCCcCccC-ChhhhcCCccceecccccccccccC---CCCCCccEEeccCCC
Q 020238          210 ---------------GQ--LSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCERLQSLP---KLPCNLSELDAHHCT  268 (329)
Q Consensus       210 ---------------~~--~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~l~~~~---~~~~~L~~L~l~~c~  268 (329)
                                     ..  .++|+.|++++|.+..+ +..+..+++|+.|++++|......+   ..+++|++|++++|.
T Consensus       246 ~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~  325 (844)
T 3j0a_A          246 GFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNL  325 (844)
T ss_dssp             SSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCC
T ss_pred             cccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCC
Confidence                           11  36899999999999854 5678899999999999987544434   345799999999998


Q ss_pred             CCcCCCCCCCCCCCCcEEEcCCCc
Q 020238          269 ALESSPGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       269 ~l~~~~~~~~~~~~L~~L~i~~~~  292 (329)
                      ..+..+..+..+++|++|++++|.
T Consensus       326 l~~~~~~~~~~l~~L~~L~L~~N~  349 (844)
T 3j0a_A          326 LGELYSSNFYGLPKVAYIDLQKNH  349 (844)
T ss_dssp             CSCCCSCSCSSCTTCCEEECCSCC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCC
Confidence            655557778888999999999883

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=6.6e-25  Score=198.75  Aligned_cols=233  Identities=21%  Similarity=0.301  Sum_probs=128.4

Q ss_pred             CchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCC
Q 020238            4 GNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTL   83 (329)
Q Consensus         4 ~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~   83 (329)
                      .+++.+|..+.  +++++|++++|+ +...+.. .+..+++|++|++++|.+....+..+.++++|++|++++|.+....
T Consensus        64 ~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~  139 (452)
T 3zyi_A           64 RGLSEVPQGIP--SNTRYLNLMENN-IQMIQAD-TFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP  139 (452)
T ss_dssp             SCCSSCCSCCC--TTCSEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC
T ss_pred             CCcCccCCCCC--CCccEEECcCCc-CceECHH-HcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC
Confidence            34555554332  456666666665 3333221 4556666666666666555544555566666666666665544333


Q ss_pred             cc-cCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcccCCc-cccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238           84 PE-ISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNELGNL  160 (329)
Q Consensus        84 ~~-~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  160 (329)
                      +. +..+++|+.|++++|.+..++. .+..+++|++|++++|...+.++. .+..+++|++|++++|.... +| .+..+
T Consensus       140 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l  217 (452)
T 3zyi_A          140 SGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPL  217 (452)
T ss_dssp             TTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTC
T ss_pred             hhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-ccccc
Confidence            22 3445666666666666664443 455566666666666544444332 35556666666666654432 22 34555


Q ss_pred             ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCcc
Q 020238          161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKL  238 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L  238 (329)
                      ++|+.|++++|.+..++...     +..+++|+.|++++|.++++ +..+..+++|+.|++++|+++.++ ..+..+++|
T Consensus       218 ~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L  292 (452)
T 3zyi_A          218 VGLEELEMSGNHFPEIRPGS-----FHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL  292 (452)
T ss_dssp             TTCCEEECTTSCCSEECGGG-----GTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTC
T ss_pred             ccccEEECcCCcCcccCccc-----ccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCC
Confidence            66666666666665554333     45556666666666666653 334555666666666666666554 334556666


Q ss_pred             ceecccccc
Q 020238          239 AYLKLSYCE  247 (329)
Q Consensus       239 ~~L~l~~~~  247 (329)
                      +.|++++|+
T Consensus       293 ~~L~L~~Np  301 (452)
T 3zyi_A          293 VELHLHHNP  301 (452)
T ss_dssp             CEEECCSSC
T ss_pred             CEEEccCCC
Confidence            666666654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=3.5e-25  Score=188.45  Aligned_cols=203  Identities=24%  Similarity=0.315  Sum_probs=123.9

Q ss_pred             cccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCcc-cccc-chhhhcCCCCCEE
Q 020238           42 LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTA-IEEL-PSSIECLSGLSAL  118 (329)
Q Consensus        42 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-i~~~-~~~~~~l~~L~~L  118 (329)
                      .++|++|++++|.+....+..+..+++|++|++++|.+....+ .+..+++|++|++++|. +..+ +..+..+++|++|
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            3466666666665554444455566666666666655443322 34445666666666664 5544 4455666667777


Q ss_pred             EcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238          119 YLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT  198 (329)
Q Consensus       119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  198 (329)
                      ++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+..++...     +..+++|+.|+++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~  185 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-----FRGLHSLDRLLLH  185 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHH-----hcCccccCEEECC
Confidence            77666655544555666666777777665555444444666667777777777666555443     4556677777777


Q ss_pred             CCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccccc
Q 020238          199 DCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERL  249 (329)
Q Consensus       199 ~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l  249 (329)
                      +|.++++ +..+..+++|+.|++++|.++.++ ..+..+++|+.|++++|+..
T Consensus       186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            7766664 555666677777777777776555 34666677777777766544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.93  E-value=1.2e-24  Score=196.48  Aligned_cols=235  Identities=21%  Similarity=0.309  Sum_probs=162.3

Q ss_pred             CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238            3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT   82 (329)
Q Consensus         3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   82 (329)
                      +.+++.+|..+.  ++++.|++++|+ +...+.. .+.++++|++|++++|.+....+..+.++++|++|++++|.+...
T Consensus        52 ~~~l~~iP~~~~--~~l~~L~L~~n~-i~~~~~~-~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~  127 (440)
T 3zyj_A           52 RKNLREVPDGIS--TNTRLLNLHENQ-IQIIKVN-SFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTI  127 (440)
T ss_dssp             SCCCSSCCSCCC--TTCSEEECCSCC-CCEECTT-TTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSC
T ss_pred             CCCcCcCCCCCC--CCCcEEEccCCc-CCeeCHH-HhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCee
Confidence            456666665554  577888888776 4444322 677778888888888776665556677788888888887765533


Q ss_pred             Cc-ccCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcccCCc-cccCCCCCcEEeccCCCCCCCCCcccCC
Q 020238           83 LP-EISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNELGN  159 (329)
Q Consensus        83 ~~-~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~  159 (329)
                      .+ .+..+++|+.|++++|.+..++. .+..+++|++|++++|.....++. .+.++++|++|++++|... .+| .+..
T Consensus       128 ~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~  205 (440)
T 3zyj_A          128 PNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTP  205 (440)
T ss_dssp             CTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTT
T ss_pred             CHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCC
Confidence            33 35556778888888887776554 567778888888877665555443 4677778888888776544 444 3667


Q ss_pred             CccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCc
Q 020238          160 LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSK  237 (329)
Q Consensus       160 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~  237 (329)
                      +++|+.|++++|.+..++...     +..+++|+.|++++|.++++ +..+..+++|+.|++++|+++.++ ..+..+++
T Consensus       206 l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  280 (440)
T 3zyj_A          206 LIKLDELDLSGNHLSAIRPGS-----FQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHH  280 (440)
T ss_dssp             CSSCCEEECTTSCCCEECTTT-----TTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTT
T ss_pred             CcccCEEECCCCccCccChhh-----hccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccC
Confidence            777888888888777665443     56677888888888877774 345667778888888888777666 44566777


Q ss_pred             cceeccccccc
Q 020238          238 LAYLKLSYCER  248 (329)
Q Consensus       238 L~~L~l~~~~~  248 (329)
                      |+.|++++|+.
T Consensus       281 L~~L~L~~Np~  291 (440)
T 3zyj_A          281 LERIHLHHNPW  291 (440)
T ss_dssp             CCEEECCSSCE
T ss_pred             CCEEEcCCCCc
Confidence            88888877663

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=2.9e-25  Score=188.92  Aligned_cols=243  Identities=22%  Similarity=0.260  Sum_probs=188.5

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      ++++++.+|..+  .++|++|++++|. +...+.. .+..+++|++|++++|.+....+..+..+++|++|++++|....
T Consensus        19 ~~~~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~   94 (285)
T 1ozn_A           19 PQQGLQAVPVGI--PAASQRIFLHGNR-ISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR   94 (285)
T ss_dssp             CSSCCSSCCTTC--CTTCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             CcCCcccCCcCC--CCCceEEEeeCCc-CCccCHH-HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc
Confidence            456788887554  4699999999998 5555532 68899999999999998777778888999999999999987444


Q ss_pred             CC-c-ccCCCCCccEEEecCcccccc-chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccC
Q 020238           82 TL-P-EISSAGNIEVMYLNGTAIEEL-PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELG  158 (329)
Q Consensus        82 ~~-~-~~~~~~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  158 (329)
                      .+ + .+..+++|++|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|++|++++|......+..+.
T Consensus        95 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  174 (285)
T 1ozn_A           95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhc
Confidence            44 3 466679999999999999866 56688899999999999887665556688899999999999876655455688


Q ss_pred             CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCc
Q 020238          159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSK  237 (329)
Q Consensus       159 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~  237 (329)
                      .+++|+.|++++|.+..+....     +..+++|+.|++++|.+++++. .+..+++|+.|++++|.+........-...
T Consensus       175 ~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~  249 (285)
T 1ozn_A          175 GLHSLDRLLLHQNRVAHVHPHA-----FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAW  249 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHH
T ss_pred             CccccCEEECCCCcccccCHhH-----ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHH
Confidence            9999999999999998764433     5778999999999999999765 588899999999999988732222122234


Q ss_pred             cceecccccccccccC
Q 020238          238 LAYLKLSYCERLQSLP  253 (329)
Q Consensus       238 L~~L~l~~~~~l~~~~  253 (329)
                      ++.+..+.+......|
T Consensus       250 l~~~~~~~~~~~c~~p  265 (285)
T 1ozn_A          250 LQKFRGSSSEVPCSLP  265 (285)
T ss_dssp             HHHCCSEECCCBEEES
T ss_pred             HHhcccccCccccCCc
Confidence            5555555444333343

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=3.9e-24  Score=199.22  Aligned_cols=250  Identities=24%  Similarity=0.287  Sum_probs=196.5

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      +++++++.+|..+.  ++|++|++++|. +..++.     .+++|++|++++|.+. .+|.   .+++|++|++++|.+.
T Consensus        47 ls~n~L~~lp~~l~--~~L~~L~L~~N~-l~~lp~-----~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           47 VGESGLTTLPDCLP--AHITTLVIPDNN-LTSLPA-----LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             CCSSCCSCCCSCCC--TTCSEEEECSCC-CSCCCC-----CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred             ecCCCcCccChhhC--CCCcEEEecCCC-CCCCCC-----cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence            46778888876665  788888888886 555554     4678888998888754 4555   6688888888887654


Q ss_pred             CCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCC
Q 020238           81 KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL  160 (329)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l  160 (329)
                       .++.  ..++|+.|++++|.+..+|..   +++|++|++++|.+. .+|.   .+++|+.|++++|... .+|   ..+
T Consensus       115 -~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~---~~~  180 (622)
T 3g06_A          115 -HLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT-SLP---MLP  180 (622)
T ss_dssp             -CCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCC---CCC
T ss_pred             -CCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCC-CCc---ccC
Confidence             3443  457888888988888877764   488889999887654 3443   3567888898886554 355   446


Q ss_pred             ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccce
Q 020238          161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAY  240 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~  240 (329)
                      ++|+.|++++|.+..++..         .++|+.|++++|.++.+|.   .+++|+.|++++|.++.+|   ..+++|+.
T Consensus       181 ~~L~~L~Ls~N~l~~l~~~---------~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N~L~~lp---~~l~~L~~  245 (622)
T 3g06_A          181 SGLQELSVSDNQLASLPTL---------PSELYKLWAYNNRLTSLPA---LPSGLKELIVSGNRLTSLP---VLPSELKE  245 (622)
T ss_dssp             TTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSSCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCE
T ss_pred             CCCcEEECCCCCCCCCCCc---------cchhhEEECcCCcccccCC---CCCCCCEEEccCCccCcCC---CCCCcCcE
Confidence            7899999999998877642         4789999999999998875   3588999999999999888   56789999


Q ss_pred             ecccccccccccCCCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcc
Q 020238          241 LKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLK  293 (329)
Q Consensus       241 L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~  293 (329)
                      |++++| .++.+|..+++|+.|++++|. ++.+|..+..+++|+.|++++|+-
T Consensus       246 L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~L~~N~l  296 (622)
T 3g06_A          246 LMVSGN-RLTSLPMLPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPL  296 (622)
T ss_dssp             EECCSS-CCSCCCCCCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEECCSCCC
T ss_pred             EECCCC-CCCcCCcccccCcEEeCCCCC-CCcCCHHHhhccccCEEEecCCCC
Confidence            999997 467888888999999999996 568888888899999999999963

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.93  E-value=1e-24  Score=187.49  Aligned_cols=236  Identities=17%  Similarity=0.189  Sum_probs=113.4

Q ss_pred             CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCc--ccCccccCCCcccEEeecCCCCC
Q 020238            3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLR--ILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      +++++.+|..+.  +++++|++++|+ +...+.. .+.++++|++|++++|.+..  ..+..+..+++|++|++++|.+.
T Consensus        16 ~~~l~~ip~~~~--~~l~~L~L~~n~-l~~i~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~   91 (306)
T 2z66_A           16 SKGLTSVPTGIP--SSATRLELESNK-LQSLPHG-VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI   91 (306)
T ss_dssp             SSCCSSCCSCCC--TTCCEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE
T ss_pred             CCCcccCCCCCC--CCCCEEECCCCc-cCccCHh-HhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc
Confidence            334444443332  355555555554 3333331 34455555555555554332  11333444555555555555433


Q ss_pred             CCCcccCCCCCccEEEecCccccccch--hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC-CCCccc
Q 020238           81 KTLPEISSAGNIEVMYLNGTAIEELPS--SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK-SLPNEL  157 (329)
Q Consensus        81 ~~~~~~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~  157 (329)
                      ...+.+..+++|++|++++|.+..++.  .+..+++|++|++++|.+....+..+..+++|++|++++|...+ ..|..+
T Consensus        92 ~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  171 (306)
T 2z66_A           92 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  171 (306)
T ss_dssp             EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHH
Confidence            222234444555555555555554432  34455555555555555444444445555555555555544433 244445


Q ss_pred             CCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCcc-CChhhhcC
Q 020238          158 GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFER-LPESIIHL  235 (329)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~-~~~~l~~~  235 (329)
                      ..+++|+.|++++|.+..++...     +..+++|+.|++++|.+++++. .+..+++|+.|++++|+++. .+..+..+
T Consensus       172 ~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~  246 (306)
T 2z66_A          172 TELRNLTFLDLSQCQLEQLSPTA-----FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  246 (306)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTT-----TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred             hhCcCCCEEECCCCCcCCcCHHH-----hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence            55555555555555555443222     3445555555555555555332 34445555555555555542 23344444


Q ss_pred             C-ccceecccccc
Q 020238          236 S-KLAYLKLSYCE  247 (329)
Q Consensus       236 ~-~L~~L~l~~~~  247 (329)
                      + +|+.|++++|+
T Consensus       247 ~~~L~~L~L~~N~  259 (306)
T 2z66_A          247 PSSLAFLNLTQND  259 (306)
T ss_dssp             CTTCCEEECTTCC
T ss_pred             hccCCEEEccCCC
Confidence            2 55555555544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=1.2e-24  Score=196.67  Aligned_cols=240  Identities=25%  Similarity=0.280  Sum_probs=122.7

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCccc-------------CcEEeccCCCCCcccCccccCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDK-------------LVNLNLNNCKSLRILPPGIFRLE   67 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-------------L~~L~l~~~~~~~~~~~~~~~l~   67 (329)
                      +++++++.+|..++.+++|++|++++|......|.  .++.+.+             +++|++++|...+ +|..   .+
T Consensus        18 l~~n~l~~iP~~i~~L~~L~~L~l~~n~~~~~~p~--~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~~---~~   91 (454)
T 1jl5_A           18 RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPP--GNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPEL---PP   91 (454)
T ss_dssp             ----------------CCHHHHHHHHHHHHHTSCT--TSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCSC---CT
T ss_pred             cccCchhhCChhHhcccchhhhhccCCcccccCCc--ccccchhcchhhhhhhhccCCCEEEecCCcccc-CCCC---cC
Confidence            45678888888888888888888888775445555  4555544             3666666665332 3321   24


Q ss_pred             cccEEeecCCCCCCCCccc-----------------CCC-CCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccC
Q 020238           68 FLKELDLWGCSKLKTLPEI-----------------SSA-GNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSL  129 (329)
Q Consensus        68 ~L~~L~l~~~~~~~~~~~~-----------------~~~-~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~  129 (329)
                      +|++|++++|.+.+ +|..                 ... ++|++|++++|.+..+| .++.+++|++|++++|.+.. +
T Consensus        92 ~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~-l  168 (454)
T 1jl5_A           92 HLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKK-L  168 (454)
T ss_dssp             TCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSC-C
T ss_pred             CCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcc-c
Confidence            45555555544332 2211                 111 35555555555555544 35555555555555554332 3


Q ss_pred             CccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhh
Q 020238          130 PSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL  209 (329)
Q Consensus       130 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~  209 (329)
                      |..   .++|++|++++|...+ +| .+..+++|+.|++++|.+..+|..         .++|+.|++++|.++++|. +
T Consensus       169 p~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~---------~~~L~~L~l~~n~l~~lp~-~  233 (454)
T 1jl5_A          169 PDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL---------PLSLESIVAGNNILEELPE-L  233 (454)
T ss_dssp             CCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC---------CTTCCEEECCSSCCSSCCC-C
T ss_pred             CCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC---------cCcccEEECcCCcCCcccc-c
Confidence            322   2355555555544333 33 355556666666666655544321         2456666666666666653 5


Q ss_pred             cCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCCCCCCccEEeccCCC
Q 020238          210 GQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCT  268 (329)
Q Consensus       210 ~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~  268 (329)
                      +.+++|+.|++++|+++.+|.   .+++|+.|++++|. ++.+|..+++|+.|++++|.
T Consensus       234 ~~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~N~-l~~l~~~~~~L~~L~ls~N~  288 (454)
T 1jl5_A          234 QNLPFLTTIYADNNLLKTLPD---LPPSLEALNVRDNY-LTDLPELPQSLTFLDVSENI  288 (454)
T ss_dssp             TTCTTCCEEECCSSCCSSCCS---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC
T ss_pred             CCCCCCCEEECCCCcCCcccc---cccccCEEECCCCc-ccccCcccCcCCEEECcCCc
Confidence            666667777777666666553   23566667766654 44466556667777777665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.93  E-value=3.2e-24  Score=188.09  Aligned_cols=274  Identities=17%  Similarity=0.091  Sum_probs=214.6

Q ss_pred             cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCc
Q 020238           14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNI   92 (329)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L   92 (329)
                      ..|+.....+.+++. ++.+|.  .+  .++|++|++++|.+....+..+.++++|++|++++|.+....+ .+..+++|
T Consensus        28 ~~C~~~~~c~~~~~~-l~~iP~--~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (353)
T 2z80_A           28 LSCDRNGICKGSSGS-LNSIPS--GL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSL  102 (353)
T ss_dssp             CEECTTSEEECCSTT-CSSCCT--TC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCCeEeeCCCCC-cccccc--cc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCC
Confidence            356777778887766 777776  33  3589999999998776555578899999999999987765544 46777999


Q ss_pred             cEEEecCccccccchh-hhcCCCCCEEEcCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCC-CcccCCCccCcEEecc
Q 020238           93 EVMYLNGTAIEELPSS-IECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSL-PNELGNLEALNSLNAE  169 (329)
Q Consensus        93 ~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~  169 (329)
                      ++|++++|.+..++.. +..+++|++|++++|.+..... ..+..+++|++|++++|...+.+ +..+..+++|+.|+++
T Consensus       103 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~  182 (353)
T 2z80_A          103 EHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEID  182 (353)
T ss_dssp             CEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEE
T ss_pred             CEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECC
Confidence            9999999999988766 7899999999999987654333 36888999999999998655544 5678899999999999


Q ss_pred             CccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhh-cCCCCccEEEcCCCcCccCC-hh---hhcCCccceeccc
Q 020238          170 GTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL-GQLSLLLELYLEKNNFERLP-ES---IIHLSKLAYLKLS  244 (329)
Q Consensus       170 ~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~i~~~~-~~---l~~~~~L~~L~l~  244 (329)
                      +|.+.......     +..+++|++|++++|.++.++..+ ..+++|+.|++++|.++.++ ..   ....+.++.++++
T Consensus       183 ~n~l~~~~~~~-----l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~  257 (353)
T 2z80_A          183 ASDLQSYEPKS-----LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFR  257 (353)
T ss_dssp             ETTCCEECTTT-----TTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEE
T ss_pred             CCCcCccCHHH-----HhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccc
Confidence            99988764433     577899999999999998877654 45899999999999998544 22   2345667778877


Q ss_pred             ccccc----cccC---CCCCCccEEeccCCCCCcCCCCCC-CCCCCCcEEEcCCCcccchhH
Q 020238          245 YCERL----QSLP---KLPCNLSELDAHHCTALESSPGLV-FPSRDPQYFDLRNNLKLDRNE  298 (329)
Q Consensus       245 ~~~~l----~~~~---~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~i~~~~~l~~~~  298 (329)
                      ++..-    ..+|   ..+++|+.|++++|. ++.+|..+ ..+++|++|++++|+-..+..
T Consensus       258 ~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          258 NVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             SCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            76432    2233   346799999999997 55777765 678899999999998776654

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=8.1e-24  Score=191.19  Aligned_cols=252  Identities=21%  Similarity=0.225  Sum_probs=144.2

Q ss_pred             CCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEE
Q 020238           17 GKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMY   96 (329)
Q Consensus        17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~   96 (329)
                      ++|++|++++|+ +...|   .+..+++|++|++++|.+.+ +|..+   .+|++|++++|.+.. +|.+..+++|+.|+
T Consensus       131 ~~L~~L~L~~n~-l~~lp---~~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQ-LEKLP---ELQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LPELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSC-CSSCC---CCTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CCCCTTCTTCCEEE
T ss_pred             CCCCEEECcCCC-CCCCc---ccCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-CccccCCCCCCEEE
Confidence            577777877776 44454   36777777777777776443 44332   467777777765443 55666667777777


Q ss_pred             ecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccccc
Q 020238           97 LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREV  176 (329)
Q Consensus        97 l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  176 (329)
                      +++|.+..+|...   ++|++|++++|.+. .+| .+..+++|++|++++|...+ +|..   .++|+.|++++|.+..+
T Consensus       202 l~~N~l~~l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~l  272 (454)
T 1jl5_A          202 ADNNSLKKLPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTDL  272 (454)
T ss_dssp             CCSSCCSSCCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSCC
T ss_pred             CCCCcCCcCCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCccccc
Confidence            7777766554432   46777777776544 444 35666677777776654432 3322   24566666666655544


Q ss_pred             Chhhhhccc----------c-CCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccc
Q 020238          177 PLSIVRLNN----------F-DGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY  245 (329)
Q Consensus       177 ~~~~~~~~~----------~-~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~  245 (329)
                      |.....+..          + ...++|+.|++++|.+++++.   ..++|+.|++++|+++.+|..   +++|+.|++++
T Consensus       273 ~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~---~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~  346 (454)
T 1jl5_A          273 PELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCD---LPPSLEELNVSNNKLIELPAL---PPRLERLIASF  346 (454)
T ss_dssp             CCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCS
T ss_pred             CcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccC---CcCcCCEEECCCCcccccccc---CCcCCEEECCC
Confidence            421100000          0 001355555555555554331   124788888888888777643   57788888888


Q ss_pred             cccccccCCCCCCccEEeccCCCCCc--CCCCCCCCC-------------CCCcEEEcCCCcc
Q 020238          246 CERLQSLPKLPCNLSELDAHHCTALE--SSPGLVFPS-------------RDPQYFDLRNNLK  293 (329)
Q Consensus       246 ~~~l~~~~~~~~~L~~L~l~~c~~l~--~~~~~~~~~-------------~~L~~L~i~~~~~  293 (329)
                      |. ++.+|..+++|+.|++++|...+  .+|..+..+             ++|++|++++|.-
T Consensus       347 N~-l~~lp~~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l  408 (454)
T 1jl5_A          347 NH-LAEVPELPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPL  408 (454)
T ss_dssp             SC-CSCCCCCCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------------------
T ss_pred             Cc-cccccchhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcC
Confidence            64 55677767788888888887655  566555444             6788888888753

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=1e-23  Score=190.89  Aligned_cols=236  Identities=22%  Similarity=0.236  Sum_probs=145.2

Q ss_pred             eEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEec
Q 020238           20 KQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLN   98 (329)
Q Consensus        20 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~   98 (329)
                      ..++.++.. +...|.  .+  .++++.|++++|.+....+..+.++++|++|++++|.+....+ .+..+++|++|+++
T Consensus        57 ~~v~c~~~~-l~~iP~--~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~  131 (452)
T 3zyi_A           57 SKVVCTRRG-LSEVPQ--GI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF  131 (452)
T ss_dssp             CEEECCSSC-CSSCCS--CC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cEEEECCCC-cCccCC--CC--CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence            455544433 555554  22  2567777777777666666667777777777777766554332 34555777777777


Q ss_pred             Cccccccchh-hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCc-ccCCCccCcEEeccCcccccc
Q 020238           99 GTAIEELPSS-IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN-ELGNLEALNSLNAEGTAIREV  176 (329)
Q Consensus        99 ~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~~  176 (329)
                      +|.+..++.. +..+++|++|++++|.+....+..+.++++|+.|++++|+..+.++. .|..+++|+.|++++|.+..+
T Consensus       132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~  211 (452)
T 3zyi_A          132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM  211 (452)
T ss_dssp             SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred             CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence            7777755543 56677777777777665544444566677777777777665555543 366667777777777766655


Q ss_pred             ChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceecccccccccccCC
Q 020238          177 PLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCERLQSLPK  254 (329)
Q Consensus       177 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~  254 (329)
                      +.       +..+++|+.|++++|.++++ +..+..+++|+.|++++|+++.+ +..+..+++|+.|++++|. ++.++.
T Consensus       212 ~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~  283 (452)
T 3zyi_A          212 PN-------LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNN-LSSLPH  283 (452)
T ss_dssp             CC-------CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCT
T ss_pred             cc-------ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCc-CCccCh
Confidence            42       34566677777777777664 44566677777777777766644 3455666666666666653 333331


Q ss_pred             ----CCCCccEEeccCCC
Q 020238          255 ----LPCNLSELDAHHCT  268 (329)
Q Consensus       255 ----~~~~L~~L~l~~c~  268 (329)
                          .+++|+.|++++|+
T Consensus       284 ~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          284 DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             TSSTTCTTCCEEECCSSC
T ss_pred             HHhccccCCCEEEccCCC
Confidence                23445555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=7.9e-27  Score=201.60  Aligned_cols=236  Identities=17%  Similarity=0.126  Sum_probs=170.0

Q ss_pred             CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEe
Q 020238           18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL   97 (329)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l   97 (329)
                      .++..+++.+. +...+. ..+..+++|++|++++|.+....|..+..+++|++|++++|.+.... .+..+++|++|++
T Consensus        11 ~l~i~~ls~~~-l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~l~~L~~L~L   87 (317)
T 3o53_A           11 RYKIEKVTDSS-LKQALA-SLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLRTLDL   87 (317)
T ss_dssp             EEEEESCCTTT-HHHHHH-HHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE-EETTCTTCCEEEC
T ss_pred             ceeEeeccccc-hhhhHH-HHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch-hhhhcCCCCEEEC
Confidence            34555555554 222222 14556789999999998877766677889999999999998765444 3777899999999


Q ss_pred             cCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccC
Q 020238           98 NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP  177 (329)
Q Consensus        98 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  177 (329)
                      ++|.+..++.    .++|++|++++|.+....+.   .+++|++|++++|......+..+..+++|+.|++++|.+..++
T Consensus        88 s~n~l~~l~~----~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           88 NNNYVQELLV----GPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             CSSEEEEEEE----CTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             cCCccccccC----CCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            9998876653    48999999999876554332   3678999999998777666667778888999999999888654


Q ss_pred             hhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCC---
Q 020238          178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK---  254 (329)
Q Consensus       178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~---  254 (329)
                      ....    ...+++|++|++++|.+++++.. ..+++|+.|++++|+++.++..+..+++|+.|++++|. ++.+|.   
T Consensus       161 ~~~~----~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~-l~~l~~~~~  234 (317)
T 3o53_A          161 FAEL----AASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALR  234 (317)
T ss_dssp             GGGG----GGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCC
T ss_pred             HHHH----hhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc-ccchhhHhh
Confidence            3321    23578899999999988887543 34888999999999888887777788888888888764 334442   


Q ss_pred             CCCCccEEeccCCCC
Q 020238          255 LPCNLSELDAHHCTA  269 (329)
Q Consensus       255 ~~~~L~~L~l~~c~~  269 (329)
                      .+++|+.|++++|+.
T Consensus       235 ~l~~L~~L~l~~N~~  249 (317)
T 3o53_A          235 FSQNLEHFDLRGNGF  249 (317)
T ss_dssp             CCTTCCEEECTTCCC
T ss_pred             cCCCCCEEEccCCCc
Confidence            223445555544443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=189.91  Aligned_cols=237  Identities=20%  Similarity=0.249  Sum_probs=155.1

Q ss_pred             ceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEe
Q 020238           19 LKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYL   97 (329)
Q Consensus        19 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l   97 (329)
                      .+.++.++.. +..+|.  .+  .++++.|++++|.+....+..+.++++|++|++++|.+....+ .+..+++|++|++
T Consensus        45 ~~~v~c~~~~-l~~iP~--~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L  119 (440)
T 3zyj_A           45 FSKVICVRKN-LREVPD--GI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL  119 (440)
T ss_dssp             SCEEECCSCC-CSSCCS--CC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred             CCEEEeCCCC-cCcCCC--CC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence            4455555443 555554  22  2567777887777666656667777778888887776544332 4555677777777


Q ss_pred             cCccccccch-hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCc-ccCCCccCcEEeccCccccc
Q 020238           98 NGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN-ELGNLEALNSLNAEGTAIRE  175 (329)
Q Consensus        98 ~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~l~~  175 (329)
                      ++|.+..++. .+..+++|++|++++|.+....+..+..+++|+.|++++|+....++. .|.++++|+.|++++|.+..
T Consensus       120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~  199 (440)
T 3zyj_A          120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE  199 (440)
T ss_dssp             CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred             CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence            7777776654 466777777777777766554555667777777777777666555543 46677777777777777776


Q ss_pred             cChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccccccccC
Q 020238          176 VPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP  253 (329)
Q Consensus       176 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~  253 (329)
                      +|.       +..+++|+.|++++|.++++ +..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|. ++.++
T Consensus       200 ~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~  271 (440)
T 3zyj_A          200 IPN-------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN-LTLLP  271 (440)
T ss_dssp             CCC-------CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC-CCCCC
T ss_pred             ccc-------cCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC-CCccC
Confidence            652       45567777777777777764 455667777777777777777443 556667777777777754 33343


Q ss_pred             ----CCCCCccEEeccCCC
Q 020238          254 ----KLPCNLSELDAHHCT  268 (329)
Q Consensus       254 ----~~~~~L~~L~l~~c~  268 (329)
                          ..+++|+.|++++|+
T Consensus       272 ~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          272 HDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             TTTTSSCTTCCEEECCSSC
T ss_pred             hhHhccccCCCEEEcCCCC
Confidence                123566666666665

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.8e-25  Score=203.78  Aligned_cols=235  Identities=16%  Similarity=0.084  Sum_probs=188.6

Q ss_pred             cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCcc
Q 020238           14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE   93 (329)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~   93 (329)
                      ..+++|++|++++|. +...+. ..+..+++|++|++++|.+....|  +..+++|++|++++|.+.. ++   ..++|+
T Consensus        31 ~~~~~L~~L~Ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~---~~~~L~  102 (487)
T 3oja_A           31 QSAWNVKELDLSGNP-LSQISA-ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQE-LL---VGPSIE  102 (487)
T ss_dssp             TTGGGCCEEECCSSC-CCCCCG-GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEE-EE---ECTTCC
T ss_pred             ccCCCccEEEeeCCc-CCCCCH-HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCC-CC---CCCCcC
Confidence            455689999999987 555443 268899999999999988765544  7889999999999986542 22   238899


Q ss_pred             EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccC-CCccCcEEeccCcc
Q 020238           94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELG-NLEALNSLNAEGTA  172 (329)
Q Consensus        94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~  172 (329)
                      .|++++|.+..++..  .+++|++|++++|.+....+..+..+++|+.|++++|...+..|..+. .+++|+.|++++|.
T Consensus       103 ~L~L~~N~l~~~~~~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~  180 (487)
T 3oja_A          103 TLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF  180 (487)
T ss_dssp             EEECCSSCCCCEEEC--CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC
T ss_pred             EEECcCCcCCCCCcc--ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc
Confidence            999999999866543  478999999999888777777788899999999999888776676665 78899999999999


Q ss_pred             ccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccc-cc
Q 020238          173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERL-QS  251 (329)
Q Consensus       173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l-~~  251 (329)
                      +..++.       ...+++|+.|++++|.++++|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|+.. ..
T Consensus       181 l~~~~~-------~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          181 IYDVKG-------QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             CCEEEC-------CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             cccccc-------cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcc
Confidence            887643       2357899999999999999888888899999999999999999988888999999999998765 23


Q ss_pred             cC---CCCCCccEEecc
Q 020238          252 LP---KLPCNLSELDAH  265 (329)
Q Consensus       252 ~~---~~~~~L~~L~l~  265 (329)
                      +|   ..++.|+.+++.
T Consensus       254 ~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          254 LRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHTTCHHHHHHHHH
T ss_pred             hHHHHHhCCCCcEEecc
Confidence            33   334556666665

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=2.7e-25  Score=191.57  Aligned_cols=241  Identities=18%  Similarity=0.134  Sum_probs=133.8

Q ss_pred             cCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC-CCCcccC--------CCCCccEEEecCcccc-ccchhh
Q 020238           40 LHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL-KTLPEIS--------SAGNIEVMYLNGTAIE-ELPSSI  109 (329)
Q Consensus        40 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~--------~~~~L~~L~l~~~~i~-~~~~~~  109 (329)
                      ...++|++|++++|.+  .+|..+...  |++|++++|.+. ..++...        .+++|++|++++|.+. .+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            3445566666666555  444433332  555566555442 1222211        3456666666666665 444443


Q ss_pred             --hcCCCCCEEEcCCCCCcccCCccccCC-----CCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccccc---Chh
Q 020238          110 --ECLSGLSALYLDHCKRLKSLPSSLCKL-----KSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREV---PLS  179 (329)
Q Consensus       110 --~~l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~---~~~  179 (329)
                        ..+++|++|++++|.+... |..+..+     ++|++|++++|...+..+..+..+++|+.|++++|.+...   +..
T Consensus       116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  194 (312)
T 1wwl_A          116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA  194 (312)
T ss_dssp             SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred             HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence              5566666666666654443 4444443     6666666666655555445666666666666666654321   111


Q ss_pred             hhhccccCCCCCccEEEcCCCCCCCcc---h-hhcCCCCccEEEcCCCcCccCC--hhhhcCCccceecccccccccccC
Q 020238          180 IVRLNNFDGLQNLTSLYLTDCGITELP---E-NLGQLSLLLELYLEKNNFERLP--ESIIHLSKLAYLKLSYCERLQSLP  253 (329)
Q Consensus       180 ~~~~~~~~~~~~L~~L~l~~~~l~~~~---~-~~~~~~~L~~L~l~~~~i~~~~--~~l~~~~~L~~L~l~~~~~l~~~~  253 (329)
                      +    .+..+++|++|++++|.+++++   . .+..+++|+.|++++|+++..+  ..+..+++|++|++++|. ++.+|
T Consensus       195 ~----~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip  269 (312)
T 1wwl_A          195 L----CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVP  269 (312)
T ss_dssp             S----CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCC
T ss_pred             H----HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhh
Confidence            1    0245666777777777666432   1 2345666777777777666432  334445667777777654 33555


Q ss_pred             CCC-CCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCc
Q 020238          254 KLP-CNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       254 ~~~-~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~  292 (329)
                      ..+ ++|+.|++++|. ++.+|. +..+++|++|++++++
T Consensus       270 ~~~~~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~  307 (312)
T 1wwl_A          270 KGLPAKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP  307 (312)
T ss_dssp             SSCCSEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred             hhccCCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence            332 467777777765 344444 5566677777777764

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.91  E-value=1.7e-25  Score=192.85  Aligned_cols=246  Identities=18%  Similarity=0.194  Sum_probs=192.9

Q ss_pred             cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCc-ccCcccc-------CCCcccEEeecCCCCCCCCcc
Q 020238           14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLR-ILPPGIF-------RLEFLKELDLWGCSKLKTLPE   85 (329)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~-------~l~~L~~L~l~~~~~~~~~~~   85 (329)
                      ...++|++|++++|..  ..|.  .+..  .|++|++++|.+.. .++..+.       ++++|++|++++|.+.+..|.
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~--~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  113 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLG--QFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP  113 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCH--HHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred             ccCCCceeEeeccccc--ccHH--HHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence            4556788888888874  4443  3333  38999999987633 4555544       689999999999988766664


Q ss_pred             -c--CCCCCccEEEecCccccccchhhhcC-----CCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCC--CCc
Q 020238           86 -I--SSAGNIEVMYLNGTAIEELPSSIECL-----SGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKS--LPN  155 (329)
Q Consensus        86 -~--~~~~~L~~L~l~~~~i~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~  155 (329)
                       +  ..+++|++|++++|.+...|..+..+     ++|++|++++|.+....+..+..+++|++|++++|...+.  .+.
T Consensus       114 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  193 (312)
T 1wwl_A          114 PLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLIS  193 (312)
T ss_dssp             CSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHH
T ss_pred             HHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHH
Confidence             3  56799999999999999778777776     9999999999998776778899999999999999886654  233


Q ss_pred             cc--CCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc--hhhcCCCCccEEEcCCCcCccCChh
Q 020238          156 EL--GNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP--ENLGQLSLLLELYLEKNNFERLPES  231 (329)
Q Consensus       156 ~~--~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~i~~~~~~  231 (329)
                      .+  ..+++|+.|++++|.+..++.....+  +..+++|+.|++++|.+++.+  ..+..+++|+.|++++|+++.+|..
T Consensus       194 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~  271 (312)
T 1wwl_A          194 ALCPLKFPTLQVLALRNAGMETPSGVCSAL--AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG  271 (312)
T ss_dssp             HSCTTSCTTCCEEECTTSCCCCHHHHHHHH--HHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS
T ss_pred             HHHhccCCCCCEEECCCCcCcchHHHHHHH--HhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh
Confidence            33  78899999999999998543322111  456789999999999999854  3456689999999999999999876


Q ss_pred             hhcCCccceecccccccccccC--CCCCCccEEeccCCCCC
Q 020238          232 IIHLSKLAYLKLSYCERLQSLP--KLPCNLSELDAHHCTAL  270 (329)
Q Consensus       232 l~~~~~L~~L~l~~~~~l~~~~--~~~~~L~~L~l~~c~~l  270 (329)
                      +.  ++|++|++++|. ++.+|  ..+++|++|++++|+..
T Consensus       272 ~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N~l~  309 (312)
T 1wwl_A          272 LP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGNPFL  309 (312)
T ss_dssp             CC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTCTTT
T ss_pred             cc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCCCCC
Confidence            66  899999999975 45556  34578999999999853

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.91  E-value=2.8e-22  Score=188.91  Aligned_cols=122  Identities=16%  Similarity=0.098  Sum_probs=95.6

Q ss_pred             CCCCchhhhh-hhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC
Q 020238            1 MPHGNIQQLW-DSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         1 l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      |++|+|+.++ ..|..+++|++|++++|+ +..++.. ++.++++|++|+|++|.+...-+..|.++++|++|++++|.+
T Consensus        59 Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~-i~~i~~~-~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l  136 (635)
T 4g8a_A           59 LSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL  136 (635)
T ss_dssp             CTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCC
T ss_pred             eeCCCCCCCCHHHHhCCCCCCEEECCCCc-CCCcChh-HhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcC
Confidence            6788999986 468899999999999987 6666543 688899999999999886654455678899999999999876


Q ss_pred             CCCCc-ccCCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCC
Q 020238           80 LKTLP-EISSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCK  124 (329)
Q Consensus        80 ~~~~~-~~~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~  124 (329)
                      ....+ .+..+++|++|++++|.+.  ..|..++.+++|++|++++|.
T Consensus       137 ~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~  184 (635)
T 4g8a_A          137 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK  184 (635)
T ss_dssp             CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcc
Confidence            54433 3666788999999888887  346677778888888887764

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.90  E-value=1.8e-22  Score=171.85  Aligned_cols=204  Identities=19%  Similarity=0.204  Sum_probs=171.8

Q ss_pred             hccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCC
Q 020238           12 SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGN   91 (329)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   91 (329)
                      .+..++++++++++++. +..+|.  .+  .++++.|++++|.+....+..+..+++|++|++++|.+. .++....+++
T Consensus         5 ~~~~l~~l~~l~~~~~~-l~~ip~--~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~   78 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRN-LTALPP--DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVDGTLPV   78 (290)
T ss_dssp             EEECSTTCCEEECTTSC-CSSCCS--CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECCSCCTT
T ss_pred             cccccCCccEEECCCCC-CCcCCC--CC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCCCCCCc
Confidence            46778899999999876 777765  33  368999999999987777788899999999999998754 4454566799


Q ss_pred             ccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238           92 IEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT  171 (329)
Q Consensus        92 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  171 (329)
                      |+.|++++|.+..+|..+..+++|++|++++|.+....+..+.++++|++|++++|......+..|..+++|+.|++++|
T Consensus        79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            99999999999988888889999999999998876666677888999999999998777655566788899999999999


Q ss_pred             cccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc
Q 020238          172 AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~  226 (329)
                      .+..++...     +..+++|+.|++++|.++.+|..+...+.|+.+++++|.+.
T Consensus       159 ~l~~l~~~~-----~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          159 NLTELPAGL-----LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCSCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cCCccCHHH-----hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            999888765     67788999999999999999888888889999999998775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.90  E-value=1.5e-25  Score=203.50  Aligned_cols=295  Identities=19%  Similarity=0.221  Sum_probs=143.1

Q ss_pred             hhhhhccCCCCceEEEecCCCCcccCCCcccccCcc----cCcEEeccCCCCCc----ccCccccCCCcccEEeecCCCC
Q 020238            8 QLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLD----KLVNLNLNNCKSLR----ILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus         8 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      .++..+..+++|++|++++|. +.+.........++    +|++|++++|.+..    .++..+..+++|++|++++|.+
T Consensus        47 ~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  125 (461)
T 1z7x_W           47 DISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  125 (461)
T ss_dssp             HHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             HHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcC
Confidence            344555566666666666665 22211101122233    56677777666542    3455566666777777776654


Q ss_pred             CCCCc-----c-cCCCCCccEEEecCccccc-----cchhhhcCCCCCEEEcCCCCCcccCCcccc-----CCCCCcEEe
Q 020238           80 LKTLP-----E-ISSAGNIEVMYLNGTAIEE-----LPSSIECLSGLSALYLDHCKRLKSLPSSLC-----KLKSLNSIY  143 (329)
Q Consensus        80 ~~~~~-----~-~~~~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~  143 (329)
                      ....+     . ....++|++|++++|.+..     ++..+..+++|++|++++|.+....+..+.     ..++|++|+
T Consensus       126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~  205 (461)
T 1z7x_W          126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALK  205 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEE
T ss_pred             chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEE
Confidence            32111     0 1112456666666666552     234455566666666666654332221111     244566666


Q ss_pred             ccCCCCCCC----CCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-----cchhhcCCC-
Q 020238          144 LRWCSSLKS----LPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-----LPENLGQLS-  213 (329)
Q Consensus       144 l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~-  213 (329)
                      +++|.....    ++..+..+++|+.|++++|.+............+..+++|++|++++|.+++     ++..+..++ 
T Consensus       206 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~  285 (461)
T 1z7x_W          206 LESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES  285 (461)
T ss_dssp             CTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTT
T ss_pred             ccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCC
Confidence            666544432    2333444555666666655544221000000001224444444444444443     233333344 


Q ss_pred             ----------------------------CccEEEcCCCcCcc-----CChhhhcCCccceecccccccccccC-------
Q 020238          214 ----------------------------LLLELYLEKNNFER-----LPESIIHLSKLAYLKLSYCERLQSLP-------  253 (329)
Q Consensus       214 ----------------------------~L~~L~l~~~~i~~-----~~~~l~~~~~L~~L~l~~~~~l~~~~-------  253 (329)
                                                  +|+.|++++|.++.     ++..+..+++|++|++++|..-...+       
T Consensus       286 L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l  365 (461)
T 1z7x_W          286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGL  365 (461)
T ss_dssp             CCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHH
T ss_pred             cceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHH
Confidence                                        44444444444431     23344455666666666653221101       


Q ss_pred             -CCCCCccEEeccCCCCCc----CCCCCCCCCCCCcEEEcCCCcccchhHHHHHhh
Q 020238          254 -KLPCNLSELDAHHCTALE----SSPGLVFPSRDPQYFDLRNNLKLDRNEIREILE  304 (329)
Q Consensus       254 -~~~~~L~~L~l~~c~~l~----~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~  304 (329)
                       ...++|++|++++|....    .++..+..+++|++|++++| .+++.+...+..
T Consensus       366 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~  420 (461)
T 1z7x_W          366 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVE  420 (461)
T ss_dssp             TSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS-SCCHHHHHHHHH
T ss_pred             cCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCC-CCCHHHHHHHHH
Confidence             113567777777765332    34444445666777777776 455555555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=1.7e-24  Score=197.34  Aligned_cols=236  Identities=16%  Similarity=0.096  Sum_probs=189.0

Q ss_pred             ccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEE
Q 020238           39 TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSAL  118 (329)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L  118 (329)
                      ...+++|++|++++|.+....|..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+..++.    .++|++|
T Consensus        30 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L  104 (487)
T 3oja_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETL  104 (487)
T ss_dssp             STTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEE
T ss_pred             cccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEE
Confidence            3456699999999998877777889999999999999988765444 7788999999999999987664    3899999


Q ss_pred             EcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238          119 YLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT  198 (329)
Q Consensus       119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  198 (329)
                      ++++|.+....+.   .+++|+.|++++|...+..|..+..+++|+.|++++|.+...+....    ...+++|+.|+++
T Consensus       105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l----~~~l~~L~~L~Ls  177 (487)
T 3oja_A          105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL----AASSDTLEHLNLQ  177 (487)
T ss_dssp             ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG----GGGTTTCCEEECT
T ss_pred             ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH----hhhCCcccEEecC
Confidence            9999887654433   46889999999998888777788899999999999999986543221    2357999999999


Q ss_pred             CCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCC---CCCCccEEeccCCCCC-cCCC
Q 020238          199 DCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK---LPCNLSELDAHHCTAL-ESSP  274 (329)
Q Consensus       199 ~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~---~~~~L~~L~l~~c~~l-~~~~  274 (329)
                      +|.+++++. ...+++|+.|++++|.++.+|..+..+++|+.|++++|. ++.+|.   .+++|+.|++++|+.. ..++
T Consensus       178 ~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~  255 (487)
T 3oja_A          178 YNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFHCGTLR  255 (487)
T ss_dssp             TSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBCHHHHH
T ss_pred             CCccccccc-cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCcCcchH
Confidence            999998865 446999999999999999998889999999999999976 445664   3478999999999865 3344


Q ss_pred             CCCCCCCCCcEEEc
Q 020238          275 GLVFPSRDPQYFDL  288 (329)
Q Consensus       275 ~~~~~~~~L~~L~i  288 (329)
                      ..+..++.++.+++
T Consensus       256 ~~~~~l~~L~~l~~  269 (487)
T 3oja_A          256 DFFSKNQRVQTVAK  269 (487)
T ss_dssp             HHHTTCHHHHHHHH
T ss_pred             HHHHhCCCCcEEec
Confidence            44444444444444

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=6.1e-22  Score=167.57  Aligned_cols=204  Identities=20%  Similarity=0.180  Sum_probs=128.0

Q ss_pred             ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEc
Q 020238           43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYL  120 (329)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l  120 (329)
                      ++|++|++++|.+....+..+.++++|++|++++|.+....+ .+..+++|++|++++|.+..++ ..+..+++|++|++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence            356777777666555444456666677777777665443332 3445566777777766666444 45666777777777


Q ss_pred             CCCCCcccCCccccCCCCCcEEeccCCCCCC-CCCcccCCCccCcEEeccCccccccChhh-hhccccCCCCCcc-EEEc
Q 020238          121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK-SLPNELGNLEALNSLNAEGTAIREVPLSI-VRLNNFDGLQNLT-SLYL  197 (329)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~l~~~~~~~-~~~~~~~~~~~L~-~L~l  197 (329)
                      .+|.+....+..+..+++|++|++++|.... .+|..+..+++|+.|++++|.+..++... ..   +..++.+. .|++
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~---l~~L~~l~l~L~l  184 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV---LHQMPLLNLSLDL  184 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH---HHTCTTCCEEEEC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh---hhhccccceeeec
Confidence            7766555444456667777777777766554 24666777777777777777776654322 11   12233333 6777


Q ss_pred             CCCCCCCcchhhcCCCCccEEEcCCCcCccCCh-hhhcCCccceecccccccc
Q 020238          198 TDCGITELPENLGQLSLLLELYLEKNNFERLPE-SIIHLSKLAYLKLSYCERL  249 (329)
Q Consensus       198 ~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~l  249 (329)
                      ++|.+++++.......+|+.|++++|+++.++. .+..+++|+.|++++|+..
T Consensus       185 s~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          185 SLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             CSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             CCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            777777766655555677777777777776663 3466777777777776543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.89  E-value=4.6e-22  Score=168.30  Aligned_cols=214  Identities=18%  Similarity=0.198  Sum_probs=175.2

Q ss_pred             CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238            3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT   82 (329)
Q Consensus         3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   82 (329)
                      +.+++.+|..+.  ++|++|++++|. +...+.. .+..+++|++|++++|.+....+..+..+++|++|++++|.+...
T Consensus        16 ~~~l~~ip~~l~--~~l~~L~ls~n~-l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~   91 (276)
T 2z62_A           16 ELNFYKIPDNLP--FSTKNLDLSFNP-LRHLGSY-SFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL   91 (276)
T ss_dssp             TSCCSSCCSSSC--TTCCEEECTTCC-CCEECTT-TTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEE
T ss_pred             CCCccccCCCCC--CCccEEECCCCc-ccccCHh-HhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCcc
Confidence            456677776553  579999999998 5555432 688899999999999987776666788999999999999887655


Q ss_pred             Cc-ccCCCCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcc-cCCccccCCCCCcEEeccCCCCCCCCCcccCC
Q 020238           83 LP-EISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLK-SLPSSLCKLKSLNSIYLRWCSSLKSLPNELGN  159 (329)
Q Consensus        83 ~~-~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  159 (329)
                      .+ .+..+++|++|++++|.+..++. .+..+++|++|++++|.+.. .+|..+..+++|++|++++|......+..+..
T Consensus        92 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  171 (276)
T 2z62_A           92 ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV  171 (276)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH
T ss_pred             ChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh
Confidence            43 46777999999999999987655 58899999999999988766 36888999999999999998777655566666


Q ss_pred             CccCc----EEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCc
Q 020238          160 LEALN----SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       160 l~~L~----~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~  226 (329)
                      +.+++    .+++++|.+..++...     +. ..+|+.|++++|.+++++.. +..+++|+.|++++|.+.
T Consensus       172 l~~L~~l~l~L~ls~n~l~~~~~~~-----~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          172 LHQMPLLNLSLDLSLNPMNFIQPGA-----FK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             HHTCTTCCEEEECCSSCCCEECTTS-----SC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             hhhccccceeeecCCCcccccCccc-----cC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            66666    8999999999877654     22 34899999999999998765 578999999999999887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.88  E-value=1.2e-24  Score=197.57  Aligned_cols=299  Identities=16%  Similarity=0.137  Sum_probs=203.1

Q ss_pred             CCCchhhhh--hhccCCCCceEEEecCCCCcccC---CCcccccCcccCcEEeccCCCCCcccCccc-cCCC----cccE
Q 020238            2 PHGNIQQLW--DSVQHNGKLKQIISRASNFFTKS---PNHSLTLHLDKLVNLNLNNCKSLRILPPGI-FRLE----FLKE   71 (329)
Q Consensus         2 ~~~~~~~l~--~~~~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~l~----~L~~   71 (329)
                      ++++++...  ..+..+++|++|++++|. +...   .....+..+++|++|++++|.+....+..+ ..++    +|++
T Consensus        11 s~~~l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~   89 (461)
T 1z7x_W           11 QCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK   89 (461)
T ss_dssp             ESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred             hhcccCchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeE
Confidence            456665542  237789999999999998 4322   111257778999999999988655333222 2344    7999


Q ss_pred             EeecCCCCCCC----Cc-ccCCCCCccEEEecCcccccc-chhh-----hcCCCCCEEEcCCCCCccc----CCccccCC
Q 020238           72 LDLWGCSKLKT----LP-EISSAGNIEVMYLNGTAIEEL-PSSI-----ECLSGLSALYLDHCKRLKS----LPSSLCKL  136 (329)
Q Consensus        72 L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~i~~~-~~~~-----~~l~~L~~L~l~~~~~~~~----~~~~~~~l  136 (329)
                      |++++|.+...    ++ .+..+++|+.|++++|.+... +..+     ...++|++|++++|.+...    ++..+..+
T Consensus        90 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  169 (461)
T 1z7x_W           90 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK  169 (461)
T ss_dssp             EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             EEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhC
Confidence            99999876632    23 456679999999999988732 2222     2356899999999887653    34556678


Q ss_pred             CCCcEEeccCCCCCCCCCcccC-----CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc------
Q 020238          137 KSLNSIYLRWCSSLKSLPNELG-----NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL------  205 (329)
Q Consensus       137 ~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~------  205 (329)
                      ++|++|++++|......+..+.     ..++|+.|++++|.+...+.... ...+..+++|++|++++|.+++.      
T Consensus       170 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l-~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~  248 (461)
T 1z7x_W          170 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDL-CGIVASKASLRELALGSNKLGDVGMAELC  248 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHH-HHHHHHCTTCCEEECCSSBCHHHHHHHHH
T ss_pred             CCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHH-HHHHHhCCCccEEeccCCcCChHHHHHHH
Confidence            9999999999875443222222     35689999999998875321100 00135689999999999988762      


Q ss_pred             chhhcCCCCccEEEcCCCcCcc-----CChhhhcCCccceecccccccccc----c----CCCCCCccEEeccCCCCCcC
Q 020238          206 PENLGQLSLLLELYLEKNNFER-----LPESIIHLSKLAYLKLSYCERLQS----L----PKLPCNLSELDAHHCTALES  272 (329)
Q Consensus       206 ~~~~~~~~~L~~L~l~~~~i~~-----~~~~l~~~~~L~~L~l~~~~~l~~----~----~~~~~~L~~L~l~~c~~l~~  272 (329)
                      +.....+++|+.|++++|.++.     ++..+..+++|++|++++|..-..    +    ....++|++|++++|.....
T Consensus       249 ~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~  328 (461)
T 1z7x_W          249 PGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  328 (461)
T ss_dssp             HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             HHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchH
Confidence            2223468999999999999985     677888899999999999864211    1    12335888888888874332


Q ss_pred             ----CCCCCCCCCCCcEEEcCCCcccchhHHHHHh
Q 020238          273 ----SPGLVFPSRDPQYFDLRNNLKLDRNEIREIL  303 (329)
Q Consensus       273 ----~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~  303 (329)
                          ++..+..++.|++|++++| .+++.....+.
T Consensus       329 ~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~  362 (461)
T 1z7x_W          329 CCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELC  362 (461)
T ss_dssp             GHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCccEEEccCC-ccccccHHHHH
Confidence                2333344567888888877 56665554443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=2.3e-21  Score=165.05  Aligned_cols=202  Identities=20%  Similarity=0.231  Sum_probs=172.7

Q ss_pred             cccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccchhhhcCCCCC
Q 020238           38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLS  116 (329)
Q Consensus        38 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~  116 (329)
                      .+..++++++++++++.+ ..+|..+.  +++++|++++|.+....+ .+..+++|+.|++++|.+..++.. ..+++|+
T Consensus         5 ~~~~l~~l~~l~~~~~~l-~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~   80 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLG   80 (290)
T ss_dssp             EEECSTTCCEEECTTSCC-SSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCC
T ss_pred             cccccCCccEEECCCCCC-CcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCC
Confidence            467788999999999764 45676554  689999999988765444 567779999999999999977664 7899999


Q ss_pred             EEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEE
Q 020238          117 ALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLY  196 (329)
Q Consensus       117 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~  196 (329)
                      +|++++|.+ ..+|..+..+++|++|++++|......+..|..+++|+.|++++|.+..++...     +..+++|+.|+
T Consensus        81 ~L~Ls~N~l-~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~  154 (290)
T 1p9a_G           81 TLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL-----LTPTPKLEKLS  154 (290)
T ss_dssp             EEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred             EEECCCCcC-CcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhh-----cccccCCCEEE
Confidence            999999875 467777888999999999998777666677999999999999999999888765     67789999999


Q ss_pred             cCCCCCCCcchh-hcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccc
Q 020238          197 LTDCGITELPEN-LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERL  249 (329)
Q Consensus       197 l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l  249 (329)
                      +++|.++++|.. +..+++|+.|++++|+++.+|..+...++|+.+++++|+..
T Consensus       155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             CCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence            999999998765 46799999999999999999998899999999999988754

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.88  E-value=1.4e-20  Score=175.35  Aligned_cols=234  Identities=25%  Similarity=0.250  Sum_probs=191.5

Q ss_pred             CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEe
Q 020238           18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL   97 (329)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l   97 (329)
                      +++.|+++++. ++.+|.  .+.  ++|++|++++|.+. .+|.   .+++|++|++++|.+. .+|.  .+++|++|++
T Consensus        41 ~l~~L~ls~n~-L~~lp~--~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~--~l~~L~~L~L  108 (622)
T 3g06_A           41 GNAVLNVGESG-LTTLPD--CLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV--LPPGLLELSI  108 (622)
T ss_dssp             CCCEEECCSSC-CSCCCS--CCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC--CCTTCCEEEE
T ss_pred             CCcEEEecCCC-cCccCh--hhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC--CCCCCCEEEC
Confidence            59999999987 777776  333  89999999998755 5665   5789999999998754 5555  5699999999


Q ss_pred             cCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccC
Q 020238           98 NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP  177 (329)
Q Consensus        98 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  177 (329)
                      ++|.+..+|.   .+++|+.|++++|.+. .+|..   +++|++|++++|... .+|.   ...+|+.|++++|.+..+|
T Consensus       109 s~N~l~~l~~---~l~~L~~L~L~~N~l~-~lp~~---l~~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~~l~  177 (622)
T 3g06_A          109 FSNPLTHLPA---LPSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLTSLP  177 (622)
T ss_dssp             CSCCCCCCCC---CCTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSCCC
T ss_pred             cCCcCCCCCC---CCCCcCEEECCCCCCC-cCCCC---CCCCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCCCCc
Confidence            9999998877   5789999999998754 45543   589999999997655 4454   3468999999999999877


Q ss_pred             hhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCCCCC
Q 020238          178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPC  257 (329)
Q Consensus       178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~  257 (329)
                               ..+++|+.|++++|.++++|.   .+++|+.|++++|.++.+|.   .+++|+.|++++| .++.+|..++
T Consensus       178 ---------~~~~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~~---~~~~L~~L~Ls~N-~L~~lp~~l~  241 (622)
T 3g06_A          178 ---------MLPSGLQELSVSDNQLASLPT---LPSELYKLWAYNNRLTSLPA---LPSGLKELIVSGN-RLTSLPVLPS  241 (622)
T ss_dssp             ---------CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSCCCCCCT
T ss_pred             ---------ccCCCCcEEECCCCCCCCCCC---ccchhhEEECcCCcccccCC---CCCCCCEEEccCC-ccCcCCCCCC
Confidence                     226899999999999999875   35899999999999998885   3588999999997 4677888889


Q ss_pred             CccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccc
Q 020238          258 NLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLD  295 (329)
Q Consensus       258 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~  295 (329)
                      +|+.|++++|. ++.+|.   .+++|++|++++| +++
T Consensus       242 ~L~~L~Ls~N~-L~~lp~---~~~~L~~L~Ls~N-~L~  274 (622)
T 3g06_A          242 ELKELMVSGNR-LTSLPM---LPSGLLSLSVYRN-QLT  274 (622)
T ss_dssp             TCCEEECCSSC-CSCCCC---CCTTCCEEECCSS-CCC
T ss_pred             cCcEEECCCCC-CCcCCc---ccccCcEEeCCCC-CCC
Confidence            99999999996 667776   5567999999998 344

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.4e-22  Score=168.74  Aligned_cols=204  Identities=19%  Similarity=0.260  Sum_probs=111.1

Q ss_pred             cccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchh-hhcCCCCC
Q 020238           38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS-IECLSGLS  116 (329)
Q Consensus        38 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~  116 (329)
                      ....+++|+.|++++|.+.. + ..+..+++|++|++++|.+. .++.+..+++|++|++++|.+..++.. +..+++|+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  112 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLH-DISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK  112 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCC-CCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             ccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCC-CchhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence            34556667777776655332 2 23556666777777666543 344555556666666666666544432 45566666


Q ss_pred             EEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEE
Q 020238          117 ALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLY  196 (329)
Q Consensus       117 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~  196 (329)
                      +|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+..++...     +..+++|+.|+
T Consensus       113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~~L~  187 (272)
T 3rfs_A          113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV-----FDKLTQLKDLR  187 (272)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEE
T ss_pred             EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH-----hcCCccCCEEE
Confidence            6666665554444444555666666666665444333334455566666666666555544433     34455566666


Q ss_pred             cCCCCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCCC
Q 020238          197 LTDCGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKL  255 (329)
Q Consensus       197 l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~  255 (329)
                      +++|.+++++. .+..+++|+.|++++|.+.      +.++.|+.+++++|...+.+|..
T Consensus       188 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~l~~~~n~~~g~ip~~  241 (272)
T 3rfs_A          188 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINKHSGVVRNS  241 (272)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBC------CCTTTTHHHHHHHHHTGGGBBCT
T ss_pred             CCCCcCCccCHHHHhCCcCCCEEEccCCCcc------ccCcHHHHHHHHHHhCCCcccCc
Confidence            66665555433 2445556666666655443      22344555555555444445443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=9.4e-21  Score=159.70  Aligned_cols=200  Identities=21%  Similarity=0.272  Sum_probs=123.0

Q ss_pred             CCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCccEE
Q 020238           17 GKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVM   95 (329)
Q Consensus        17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L   95 (329)
                      .+.+.++++++. ++.+|.  .+  .+++++|++++|.+....+..+..+++|++|++++|.+....+. +..+++|++|
T Consensus        16 ~~~~~l~~~~~~-l~~ip~--~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L   90 (270)
T 2o6q_A           16 NNKNSVDCSSKK-LTAIPS--NI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETL   90 (270)
T ss_dssp             TTTTEEECTTSC-CSSCCS--CC--CTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEE
T ss_pred             CCCCEEEccCCC-CCccCC--CC--CCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEE
Confidence            356777777765 555554  22  25678888888776554445677777888888877665433332 3445677777


Q ss_pred             EecCccccccch-hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccc
Q 020238           96 YLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR  174 (329)
Q Consensus        96 ~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  174 (329)
                      ++++|.+..++. .+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus        91 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~  170 (270)
T 2o6q_A           91 WVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK  170 (270)
T ss_dssp             ECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc
Confidence            777777665543 3456667777777776655544455566666777777665544433334566666666666666666


Q ss_pred             ccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCc
Q 020238          175 EVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       175 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~  226 (329)
                      .++...     +..+++|++|++++|.+++++.. +..+++|+.|++++|.+.
T Consensus       171 ~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          171 RVPEGA-----FDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCCTTT-----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EeChhH-----hccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            555433     44556666666666666665442 455666666666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.6e-20  Score=158.29  Aligned_cols=199  Identities=23%  Similarity=0.304  Sum_probs=167.3

Q ss_pred             ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccchh-hhcCCCCCEEEc
Q 020238           43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSS-IECLSGLSALYL  120 (329)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l  120 (329)
                      .+.+.++++++.+. .+|..+.  +++++|++++|.+....+ .+..+++|++|++++|.+..++.. +..+++|++|++
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            35789999997644 5676543  689999999987665444 567789999999999999988765 478999999999


Q ss_pred             CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238          121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC  200 (329)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  200 (329)
                      ++|.+....+..+..+++|++|++++|......+..|..+++|+.|++++|.+..++...     +..+++|+.|++++|
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-----~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGV-----FDKLTSLKELRLYNN  167 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSS
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhH-----ccCCcccceeEecCC
Confidence            998876655566788999999999998877766677899999999999999999887665     677899999999999


Q ss_pred             CCCCcch-hhcCCCCccEEEcCCCcCccCCh-hhhcCCccceecccccccc
Q 020238          201 GITELPE-NLGQLSLLLELYLEKNNFERLPE-SIIHLSKLAYLKLSYCERL  249 (329)
Q Consensus       201 ~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~l  249 (329)
                      .+++++. .+..+++|+.|++++|+++.++. .+..+++|+.|++++|+..
T Consensus       168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            9999765 47789999999999999998874 5788999999999998754

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=6.8e-21  Score=160.72  Aligned_cols=228  Identities=19%  Similarity=0.199  Sum_probs=181.2

Q ss_pred             CcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEc
Q 020238           41 HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYL  120 (329)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l  120 (329)
                      .+..+..+++.++......  ....+++|+.|+++++.+ ..++.+..+++|+.|++++|.+..++ .+..+++|++|++
T Consensus        17 ~~~~l~~l~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i-~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L   92 (272)
T 3rfs_A           17 AFAETIKANLKKKSVTDAV--TQNELNSIDQIIANNSDI-KSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLIL   92 (272)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTTCCEEECTTSCC-CCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEEC
T ss_pred             hHHHHHHHHhcCccccccc--ccccccceeeeeeCCCCc-ccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEEC
Confidence            3455666777776544432  245688999999998764 45667778899999999999988764 6788999999999


Q ss_pred             CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238          121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC  200 (329)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  200 (329)
                      ++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+..++...     +..+++|+.|++++|
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-----~~~l~~L~~L~l~~n  167 (272)
T 3rfs_A           93 TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGV-----FDKLTNLTELDLSYN  167 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSS
T ss_pred             CCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHH-----hccCccCCEEECCCC
Confidence            998876656666788999999999998877666666888999999999999998877655     577899999999999


Q ss_pred             CCCCcchh-hcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccccccccCCCCCCccEEeccCCCCCcCCCCCCC
Q 020238          201 GITELPEN-LGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVF  278 (329)
Q Consensus       201 ~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~  278 (329)
                      .+++++.. +..+++|+.|++++|+++.++ ..+..+++|+.|++++|+....    +++|+.++++.|...+.+|..++
T Consensus       168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~----~~~l~~l~~~~n~~~g~ip~~~~  243 (272)
T 3rfs_A          168 QLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT----CPGIRYLSEWINKHSGVVRNSAG  243 (272)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC----TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred             CcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc----CcHHHHHHHHHHhCCCcccCccc
Confidence            99987654 578999999999999998766 4578899999999999875543    45788898888887777777666


Q ss_pred             CCC
Q 020238          279 PSR  281 (329)
Q Consensus       279 ~~~  281 (329)
                      ...
T Consensus       244 ~~~  246 (272)
T 3rfs_A          244 SVA  246 (272)
T ss_dssp             CBC
T ss_pred             ccC
Confidence            543

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=3e-21  Score=165.82  Aligned_cols=190  Identities=21%  Similarity=0.306  Sum_probs=85.8

Q ss_pred             CcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEc
Q 020238           41 HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYL  120 (329)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l  120 (329)
                      .+++|++|++++|.+.. ++ .+..+++|++|++++|.+.. ++.+..+++|+.|++++|.+..++ .+..+++|++|++
T Consensus        39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEEC
T ss_pred             HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-ChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEEC
Confidence            34444444444443222 22 23444444444444443322 222344444444444444444432 3444455555555


Q ss_pred             CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238          121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC  200 (329)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  200 (329)
                      ++|.+.. ++ .+..+++|+.|++++|..... +. +..+++|+.|++++|.+..++.       +..+++|+.|++++|
T Consensus       115 ~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-------l~~l~~L~~L~l~~n  183 (308)
T 1h6u_A          115 TSTQITD-VT-PLAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP-------LANLSKLTTLKADDN  183 (308)
T ss_dssp             TTSCCCC-CG-GGTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEECCSS
T ss_pred             CCCCCCC-ch-hhcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-------hcCCCCCCEEECCCC
Confidence            5544322 22 144445555555554433322 11 4444555555555555444332       233455555555555


Q ss_pred             CCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238          201 GITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       201 ~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~  247 (329)
                      .+++++. +..+++|+.|++++|+++.++ .+..+++|+.|++++|+
T Consensus       184 ~l~~~~~-l~~l~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          184 KISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             CCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEEEE
T ss_pred             ccCcChh-hcCCCCCCEEEccCCccCccc-cccCCCCCCEEEccCCe
Confidence            5555443 444555555555555555444 24455555555555544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=5.9e-21  Score=158.03  Aligned_cols=58  Identities=28%  Similarity=0.279  Sum_probs=23.6

Q ss_pred             CCCCcc-EEEcCCCCCCCcchhhcCCCCccEEEcCCCc-CccCC-hhhhcC-Cccceecccc
Q 020238          188 GLQNLT-SLYLTDCGITELPENLGQLSLLLELYLEKNN-FERLP-ESIIHL-SKLAYLKLSY  245 (329)
Q Consensus       188 ~~~~L~-~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~-i~~~~-~~l~~~-~~L~~L~l~~  245 (329)
                      .+++|+ .|++++|.++.+|......++|+.|++++|+ ++.++ ..+..+ ++|+.|++++
T Consensus       153 ~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          153 GLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             TTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             chhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence            344444 4444444444443332222444444444442 44332 223333 4444444444

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=6.8e-21  Score=157.63  Aligned_cols=195  Identities=17%  Similarity=0.160  Sum_probs=149.4

Q ss_pred             ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc--ccCCCCCccEEEecC-ccccccc-hhhhcCCCCCEE
Q 020238           43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYLNG-TAIEELP-SSIECLSGLSAL  118 (329)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l~~-~~i~~~~-~~~~~l~~L~~L  118 (329)
                      ++|++|++++|.+....+..+.++++|++|++++|..+..++  .+..+++|+.|++++ |.+..++ ..+..+++|++|
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL  110 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence            378888888877665555567778888888888876333333  456668888888887 8888665 457788899999


Q ss_pred             EcCCCCCcccCCccccCCCCCc---EEeccCCCCCCCCC-cccCCCccCc-EEeccCccccccChhhhhccccCCCCCcc
Q 020238          119 YLDHCKRLKSLPSSLCKLKSLN---SIYLRWCSSLKSLP-NELGNLEALN-SLNAEGTAIREVPLSIVRLNNFDGLQNLT  193 (329)
Q Consensus       119 ~l~~~~~~~~~~~~~~~l~~L~---~L~l~~~~~~~~~~-~~~~~l~~L~-~L~l~~~~l~~~~~~~~~~~~~~~~~~L~  193 (329)
                      ++++|.+.. +|. +..+++|+   +|++++|...+.++ ..|..+++|+ .|++++|.+..++...     +.. ++|+
T Consensus       111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~-----~~~-~~L~  182 (239)
T 2xwt_C          111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYA-----FNG-TKLD  182 (239)
T ss_dssp             EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTT-----TTT-CEEE
T ss_pred             eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhh-----cCC-CCCC
Confidence            999877544 555 67777777   99999983444444 4588899999 9999999988887655     344 7899


Q ss_pred             EEEcCCCC-CCCcch-hhcCC-CCccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238          194 SLYLTDCG-ITELPE-NLGQL-SLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       194 ~L~l~~~~-l~~~~~-~~~~~-~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~  247 (329)
                      .|++++|. +++++. .+..+ ++|+.|++++|+++.+|..  .+++|+.|+++++.
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TCTTCSEEECTTC-
T ss_pred             EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--HhccCceeeccCcc
Confidence            99999994 988754 56778 9999999999999988864  67889999998765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.86  E-value=1.6e-20  Score=161.19  Aligned_cols=197  Identities=23%  Similarity=0.327  Sum_probs=164.2

Q ss_pred             cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCcc
Q 020238           14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE   93 (329)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~   93 (329)
                      ..+++|++|++++|. +...+   .+..+++|++|++++|.+.. ++. +..+++|++|++++|.+. .++.+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~-i~~l~---~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~  110 (308)
T 1h6u_A           38 ADLDGITTLSAFGTG-VTTIE---GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVSAIAGLQSIK  110 (308)
T ss_dssp             HHHHTCCEEECTTSC-CCCCT---TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCGGGTTCTTCC
T ss_pred             HHcCCcCEEEeeCCC-ccCch---hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-CchhhcCCCCCC
Confidence            457899999999987 55554   47789999999999987655 344 788999999999998754 567788889999


Q ss_pred             EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccc
Q 020238           94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAI  173 (329)
Q Consensus        94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  173 (329)
                      .|++++|.+..++. +..+++|++|++++|.+.. ++. +..+++|+.|++++|.... ++. +..+++|+.|++++|.+
T Consensus       111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSD-LTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCC
T ss_pred             EEECCCCCCCCchh-hcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCC-Chh-hcCCCCCCEEECCCCcc
Confidence            99999999988765 8899999999999987654 333 7789999999999976654 433 88899999999999999


Q ss_pred             cccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCCh
Q 020238          174 REVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPE  230 (329)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~  230 (329)
                      ..++.       +..+++|++|++++|.+++++. +..+++|+.|++++|.++..|.
T Consensus       186 ~~~~~-------l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~~~  234 (308)
T 1h6u_A          186 SDISP-------LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQPV  234 (308)
T ss_dssp             CCCGG-------GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECCCE
T ss_pred             CcChh-------hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecCCe
Confidence            87764       3568999999999999999874 7889999999999999887664

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=1e-20  Score=162.71  Aligned_cols=221  Identities=17%  Similarity=0.120  Sum_probs=120.3

Q ss_pred             cCcEEeccCCCCCcc-cCc--cccCCCcccEEeecCCCCCCCCccc---CCCCCccEEEecCcccccc-c----hhhhcC
Q 020238           44 KLVNLNLNNCKSLRI-LPP--GIFRLEFLKELDLWGCSKLKTLPEI---SSAGNIEVMYLNGTAIEEL-P----SSIECL  112 (329)
Q Consensus        44 ~L~~L~l~~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~~~~~~~~---~~~~~L~~L~l~~~~i~~~-~----~~~~~l  112 (329)
                      .++.+.+.++..... +..  .+..+++|++|++++|.+.+..+..   ...++|++|++++|.+... +    ..+..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            456666666554321 111  1122455777777777666555432   4456777777777766631 1    223456


Q ss_pred             CCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCC--C--CcccCCCccCcEEeccCccccccChhhhhccccCC
Q 020238          113 SGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKS--L--PNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDG  188 (329)
Q Consensus       113 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  188 (329)
                      ++|++|++++|.+....+..+..+++|++|++++|...+.  +  +..+..+++|+.|++++|.++.++.....+  ++.
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l--~~~  222 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAAL--AAA  222 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHH--HHH
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHH--Hhc
Confidence            6777777777666555555666677777777776654431  1  122345566666666666665443321100  234


Q ss_pred             CCCccEEEcCCCCCCCc-chhhcCC---CCccEEEcCCCcCccCChhhhcCCccceeccccccccc-ccCCCCCCccEEe
Q 020238          189 LQNLTSLYLTDCGITEL-PENLGQL---SLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQ-SLPKLPCNLSELD  263 (329)
Q Consensus       189 ~~~L~~L~l~~~~l~~~-~~~~~~~---~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~-~~~~~~~~L~~L~  263 (329)
                      +++|++|++++|.+++. |..+..+   ++|+.|++++|+++.+|..+.  ++|+.|++++|...+ ..+..+++|+.|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~~~~l~~L~~L~  300 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQPDELPEVDNLT  300 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCCTTSCCCCSCEE
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCchhhhCCCccEEE
Confidence            56666666666666664 4444444   566666666666666665442  566666666654322 1123344555555


Q ss_pred             ccCCC
Q 020238          264 AHHCT  268 (329)
Q Consensus       264 l~~c~  268 (329)
                      +++|+
T Consensus       301 L~~N~  305 (310)
T 4glp_A          301 LDGNP  305 (310)
T ss_dssp             CSSTT
T ss_pred             CcCCC
Confidence            55554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.85  E-value=1.9e-22  Score=178.90  Aligned_cols=240  Identities=15%  Similarity=0.200  Sum_probs=145.0

Q ss_pred             CCchhhhhhhccCCCCceEEEecCCCCcccCCC--cccccCcccCcEEeccCCCCC---cccCccc-------cCCCccc
Q 020238            3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPN--HSLTLHLDKLVNLNLNNCKSL---RILPPGI-------FRLEFLK   70 (329)
Q Consensus         3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~---~~~~~~~-------~~l~~L~   70 (329)
                      +..+..++..+..+++|++|++++|......+.  ...+..+++|++|++++|...   ..+|..+       ..+++|+
T Consensus        18 ~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~   97 (386)
T 2ca6_A           18 TEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH   97 (386)
T ss_dssp             SHHHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCC
T ss_pred             HHHHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCccc
Confidence            345556666777778888888888763222111  013566788888888876322   2333333       5677888


Q ss_pred             EEeecCCCCCCC----Cc-ccCCCCCccEEEecCccccc-----cchhhhcC---------CCCCEEEcCCCCCcc-cCC
Q 020238           71 ELDLWGCSKLKT----LP-EISSAGNIEVMYLNGTAIEE-----LPSSIECL---------SGLSALYLDHCKRLK-SLP  130 (329)
Q Consensus        71 ~L~l~~~~~~~~----~~-~~~~~~~L~~L~l~~~~i~~-----~~~~~~~l---------~~L~~L~l~~~~~~~-~~~  130 (329)
                      +|++++|.+...    ++ .+..+++|+.|++++|.+..     ++..+..+         ++|++|++++|.+.. .++
T Consensus        98 ~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~  177 (386)
T 2ca6_A           98 TVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMK  177 (386)
T ss_dssp             EEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHH
T ss_pred             EEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHH
Confidence            888888766542    22 34455777777777777652     22233334         777777777776542 222


Q ss_pred             ---ccccCCCCCcEEeccCCCCCC-----CCCcccCCCccCcEEeccCcccc-----ccChhhhhccccCCCCCccEEEc
Q 020238          131 ---SSLCKLKSLNSIYLRWCSSLK-----SLPNELGNLEALNSLNAEGTAIR-----EVPLSIVRLNNFDGLQNLTSLYL  197 (329)
Q Consensus       131 ---~~~~~l~~L~~L~l~~~~~~~-----~~~~~~~~l~~L~~L~l~~~~l~-----~~~~~~~~~~~~~~~~~L~~L~l  197 (329)
                         ..+..+++|++|++++|....     ..+..+..+++|+.|++++|.+.     .++..      +..+++|+.|++
T Consensus       178 ~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~------l~~~~~L~~L~L  251 (386)
T 2ca6_A          178 EWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA------LKSWPNLRELGL  251 (386)
T ss_dssp             HHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH------GGGCTTCCEEEC
T ss_pred             HHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH------HccCCCcCEEEC
Confidence               345566777777777765442     12225566677777777777663     22222      345667777777


Q ss_pred             CCCCCCC-----cchhhc--CCCCccEEEcCCCcCcc-----CChhh-hcCCccceeccccccc
Q 020238          198 TDCGITE-----LPENLG--QLSLLLELYLEKNNFER-----LPESI-IHLSKLAYLKLSYCER  248 (329)
Q Consensus       198 ~~~~l~~-----~~~~~~--~~~~L~~L~l~~~~i~~-----~~~~l-~~~~~L~~L~l~~~~~  248 (329)
                      ++|.+++     ++..+.  .+++|+.|++++|.++.     ++..+ .++++|+.|++++|+.
T Consensus       252 ~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l  315 (386)
T 2ca6_A          252 NDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  315 (386)
T ss_dssp             TTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             CCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence            7777765     244442  36777777777777764     66555 4467777777777654

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=7.2e-21  Score=163.68  Aligned_cols=225  Identities=19%  Similarity=0.164  Sum_probs=170.3

Q ss_pred             CCCceEEEecCCCCcccCC--CcccccCcccCcEEeccCCCCCcccCccc--cCCCcccEEeecCCCCCCCCc-----cc
Q 020238           16 NGKLKQIISRASNFFTKSP--NHSLTLHLDKLVNLNLNNCKSLRILPPGI--FRLEFLKELDLWGCSKLKTLP-----EI   86 (329)
Q Consensus        16 ~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~-----~~   86 (329)
                      ...++.+.+.++.. ....  .......+++|++|++++|.+.+..|..+  ..+++|++|++++|.+....+     .+
T Consensus        63 ~~~l~~l~l~~~~~-~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~  141 (310)
T 4glp_A           63 ALRVRRLTVGAAQV-PAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ  141 (310)
T ss_dssp             SCCCCEEEECSCCC-BHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred             hcceeEEEEeCCcC-CHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence            34678888888762 2111  10123345679999999998888888777  789999999999988776544     23


Q ss_pred             CCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCccc--C--CccccCCCCCcEEeccCCCCCCCCCc----cc
Q 020238           87 SSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKS--L--PSSLCKLKSLNSIYLRWCSSLKSLPN----EL  157 (329)
Q Consensus        87 ~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~--~--~~~~~~l~~L~~L~l~~~~~~~~~~~----~~  157 (329)
                      ..+++|++|++++|.+..++ ..+..+++|++|++++|.+...  +  +..+..+++|++|++++|... .++.    .+
T Consensus       142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~  220 (310)
T 4glp_A          142 WLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA  220 (310)
T ss_dssp             TBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH
T ss_pred             hhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH
Confidence            44689999999999998655 5678899999999999886542  2  223467889999999997664 3332    24


Q ss_pred             CCCccCcEEeccCcccccc-ChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCC
Q 020238          158 GNLEALNSLNAEGTAIREV-PLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLS  236 (329)
Q Consensus       158 ~~l~~L~~L~l~~~~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~  236 (329)
                      ..+++|+.|++++|.+... |..+..   +..+++|++|++++|.++++|..+.  ++|+.|++++|+++.+|. +..++
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~---~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l~  294 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPR---CMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDELP  294 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSS---CCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHh---ccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhCC
Confidence            6778999999999999876 544322   2334799999999999999887664  899999999999998765 67889


Q ss_pred             ccceeccccccc
Q 020238          237 KLAYLKLSYCER  248 (329)
Q Consensus       237 ~L~~L~l~~~~~  248 (329)
                      +|+.|++++|+.
T Consensus       295 ~L~~L~L~~N~l  306 (310)
T 4glp_A          295 EVDNLTLDGNPF  306 (310)
T ss_dssp             CCSCEECSSTTT
T ss_pred             CccEEECcCCCC
Confidence            999999999864

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=7.2e-22  Score=173.65  Aligned_cols=243  Identities=13%  Similarity=0.045  Sum_probs=162.3

Q ss_pred             CCCCchhhhh-hhccCCCCceEEEecCCCCcccCCCc---ccccCcc-cCcEEeccCCCCCcccCccccCC-----Cccc
Q 020238            1 MPHGNIQQLW-DSVQHNGKLKQIISRASNFFTKSPNH---SLTLHLD-KLVNLNLNNCKSLRILPPGIFRL-----EFLK   70 (329)
Q Consensus         1 l~~~~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L~   70 (329)
                      |++++++... ..+...++|++|++++|. +...+..   ..+..++ +|++|++++|.+....+..+..+     ++|+
T Consensus         5 ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~   83 (362)
T 3goz_A            5 LTLHPGSNPVEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVT   83 (362)
T ss_dssp             CCCCTTCCHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred             cccccchHHHHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCcc
Confidence            5677888654 444455569999999998 5555421   2567788 89999999998766555555543     8899


Q ss_pred             EEeecCCCCCCCCcc-----cCCC-CCccEEEecCccccccch-----hhhc-CCCCCEEEcCCCCCccc----CCcccc
Q 020238           71 ELDLWGCSKLKTLPE-----ISSA-GNIEVMYLNGTAIEELPS-----SIEC-LSGLSALYLDHCKRLKS----LPSSLC  134 (329)
Q Consensus        71 ~L~l~~~~~~~~~~~-----~~~~-~~L~~L~l~~~~i~~~~~-----~~~~-l~~L~~L~l~~~~~~~~----~~~~~~  134 (329)
                      +|++++|.+....+.     +... ++|+.|++++|.++..+.     .+.. .++|++|++++|.+...    ++..+.
T Consensus        84 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~  163 (362)
T 3goz_A           84 SLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILA  163 (362)
T ss_dssp             EEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHH
T ss_pred             EEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHh
Confidence            999999886655442     4444 788999999888874432     2333 35888999988876543    233445


Q ss_pred             CCC-CCcEEeccCCCCCCCCCc----ccCCC-ccCcEEeccCcccccc-----ChhhhhccccCCCCCccEEEcCCCCCC
Q 020238          135 KLK-SLNSIYLRWCSSLKSLPN----ELGNL-EALNSLNAEGTAIREV-----PLSIVRLNNFDGLQNLTSLYLTDCGIT  203 (329)
Q Consensus       135 ~l~-~L~~L~l~~~~~~~~~~~----~~~~l-~~L~~L~l~~~~l~~~-----~~~~~~~~~~~~~~~L~~L~l~~~~l~  203 (329)
                      ..+ +|++|++++|......+.    .+... ++|+.|++++|.+...     +..+.     ...++|++|++++|.++
T Consensus       164 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~-----~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          164 AIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS-----SIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             TSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHH-----HSCTTCCEEECCSSCCC
T ss_pred             cCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHh-----cCCCCceEEECcCCCCC
Confidence            555 888888888766554433    23344 4788888888887762     22221     12457888888888887


Q ss_pred             Ccc-----hhhcCCCCccEEEcCCCcCccC--------ChhhhcCCccceecccccccc
Q 020238          204 ELP-----ENLGQLSLLLELYLEKNNFERL--------PESIIHLSKLAYLKLSYCERL  249 (329)
Q Consensus       204 ~~~-----~~~~~~~~L~~L~l~~~~i~~~--------~~~l~~~~~L~~L~l~~~~~l  249 (329)
                      +.+     ..+..+++|+.|++++|.+..+        +..+..+++|+.|++++|+.-
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~  297 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIH  297 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCC
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCC
Confidence            632     3345678888888888874422        234556777888888877643

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.83  E-value=1.8e-21  Score=169.32  Aligned_cols=245  Identities=17%  Similarity=0.208  Sum_probs=141.2

Q ss_pred             CceEEEecCCCCcccCCCcccccCc--ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC-Cc-ccCCCCCcc
Q 020238           18 KLKQIISRASNFFTKSPNHSLTLHL--DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT-LP-EISSAGNIE   93 (329)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~-~~~~~~~L~   93 (329)
                      .++.++++++. +.  +.  .+..+  ++++.|++++|.+....+. +..+++|++|++++|.+... ++ .+..+++|+
T Consensus        48 ~~~~l~l~~~~-~~--~~--~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~  121 (336)
T 2ast_B           48 LWQTLDLTGKN-LH--PD--VTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ  121 (336)
T ss_dssp             TSSEEECTTCB-CC--HH--HHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred             hheeecccccc-CC--HH--HHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence            36677777665 22  11  34444  6777777777665444333 45677777777777664432 33 234457777


Q ss_pred             EEEecCcccc-ccchhhhcCCCCCEEEcCCCC-Ccc-cCCccccCCCCCcEEeccCC-CCCCC-CCcccCCCc-cCcEEe
Q 020238           94 VMYLNGTAIE-ELPSSIECLSGLSALYLDHCK-RLK-SLPSSLCKLKSLNSIYLRWC-SSLKS-LPNELGNLE-ALNSLN  167 (329)
Q Consensus        94 ~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~  167 (329)
                      +|++++|.+. ..+..++.+++|++|++++|. +.. .++..+..+++|++|++++| ..... ++..+..++ +|+.|+
T Consensus       122 ~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~  201 (336)
T 2ast_B          122 NLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLN  201 (336)
T ss_dssp             EEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEE
T ss_pred             EEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEE
Confidence            7777777666 445566667777777777763 322 24444566777777777776 33322 344455666 777777


Q ss_pred             ccCcc--cc--ccChhhhhccccCCCCCccEEEcCCCC-CCC-cchhhcCCCCccEEEcCCCc-Cc-cCChhhhcCCccc
Q 020238          168 AEGTA--IR--EVPLSIVRLNNFDGLQNLTSLYLTDCG-ITE-LPENLGQLSLLLELYLEKNN-FE-RLPESIIHLSKLA  239 (329)
Q Consensus       168 l~~~~--l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~-~~~~~~~~~~L~~L~l~~~~-i~-~~~~~l~~~~~L~  239 (329)
                      +++|.  +.  .++..      +..+++|++|++++|. +++ .+..+..+++|+.|++++|. +. .....+..+++|+
T Consensus       202 l~~~~~~~~~~~l~~~------~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  275 (336)
T 2ast_B          202 LSGYRKNLQKSDLSTL------VRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  275 (336)
T ss_dssp             CCSCGGGSCHHHHHHH------HHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             eCCCcccCCHHHHHHH------HhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence            77773  22  22222      2346677777777776 443 44556667777777777773 32 2123456677777


Q ss_pred             eecccccccccc--cCCCCCCccEEeccCCCCCcCCCCC
Q 020238          240 YLKLSYCERLQS--LPKLPCNLSELDAHHCTALESSPGL  276 (329)
Q Consensus       240 ~L~l~~~~~l~~--~~~~~~~L~~L~l~~c~~l~~~~~~  276 (329)
                      .|++++|  ++.  +......++.|++++|...+..|..
T Consensus       276 ~L~l~~~--i~~~~~~~l~~~l~~L~l~~n~l~~~~~~~  312 (336)
T 2ast_B          276 TLQVFGI--VPDGTLQLLKEALPHLQINCSHFTTIARPT  312 (336)
T ss_dssp             EEECTTS--SCTTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred             EEeccCc--cCHHHHHHHHhhCcceEEecccCccccCCc
Confidence            7777776  211  1111123555666655544444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1.9e-21  Score=172.54  Aligned_cols=234  Identities=19%  Similarity=0.125  Sum_probs=169.6

Q ss_pred             cccCcccCcEEeccCCCCCcc----cCccccCCCcccEEeecCCCCC---CCCc-c-------cCCCCCccEEEecCccc
Q 020238           38 LTLHLDKLVNLNLNNCKSLRI----LPPGIFRLEFLKELDLWGCSKL---KTLP-E-------ISSAGNIEVMYLNGTAI  102 (329)
Q Consensus        38 ~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~---~~~~-~-------~~~~~~L~~L~l~~~~i  102 (329)
                      .+..+++|++|++++|.+...    ++..+..+++|++|++++|...   ..+| .       +..+++|++|++++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            677889999999999987664    3445778999999999997433   2233 1       25678999999999988


Q ss_pred             cc-----cchhhhcCCCCCEEEcCCCCCcccCC----ccccCC---------CCCcEEeccCCCCC-CCCC---cccCCC
Q 020238          103 EE-----LPSSIECLSGLSALYLDHCKRLKSLP----SSLCKL---------KSLNSIYLRWCSSL-KSLP---NELGNL  160 (329)
Q Consensus       103 ~~-----~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l---------~~L~~L~l~~~~~~-~~~~---~~~~~l  160 (329)
                      ..     ++..+..+++|++|++++|.+....+    ..+..+         ++|++|++++|... ..++   ..+..+
T Consensus       107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH  186 (386)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhC
Confidence            74     66778889999999999988753322    233334         89999999998765 2333   345677


Q ss_pred             ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC-----CcchhhcCCCCccEEEcCCCcCcc-----CCh
Q 020238          161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-----ELPENLGQLSLLLELYLEKNNFER-----LPE  230 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~i~~-----~~~  230 (329)
                      ++|+.|++++|.+............+..+++|+.|++++|.++     .++..+..+++|+.|++++|.++.     ++.
T Consensus       187 ~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~  266 (386)
T 2ca6_A          187 RLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVD  266 (386)
T ss_dssp             TTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHH
T ss_pred             CCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHH
Confidence            8999999999987732100000002566889999999999885     367778889999999999998873     355


Q ss_pred             hhhc--CCccceeccccccccc----ccCC----CCCCccEEeccCCCCCc
Q 020238          231 SIIH--LSKLAYLKLSYCERLQ----SLPK----LPCNLSELDAHHCTALE  271 (329)
Q Consensus       231 ~l~~--~~~L~~L~l~~~~~l~----~~~~----~~~~L~~L~l~~c~~l~  271 (329)
                      .+..  +++|+.|++++|..-.    .+|.    .+++|+.|++++|+...
T Consensus       267 ~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~  317 (386)
T 2ca6_A          267 AFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  317 (386)
T ss_dssp             HHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             HHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCc
Confidence            6643  8889999999876544    2553    24788888888887543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.82  E-value=6.6e-21  Score=165.75  Aligned_cols=226  Identities=15%  Similarity=0.157  Sum_probs=169.4

Q ss_pred             CCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcc-cCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccE
Q 020238           17 GKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRI-LPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEV   94 (329)
Q Consensus        17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~   94 (329)
                      ++++.|+++++. +...+.  .+..+++|++|++++|.+... ++..+..+++|++|++++|.+....+ .+..+++|++
T Consensus        70 ~~l~~L~l~~n~-l~~~~~--~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  146 (336)
T 2ast_B           70 QGVIAFRCPRSF-MDQPLA--EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVR  146 (336)
T ss_dssp             TTCSEEECTTCE-ECSCCC--SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSE
T ss_pred             ccceEEEcCCcc-ccccch--hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCE
Confidence            799999999987 444443  356799999999999986654 77778899999999999997654443 4666899999


Q ss_pred             EEecCc-ccc--ccchhhhcCCCCCEEEcCCC-CCccc-CCccccCCC-CCcEEeccCCC--CC-CCCCcccCCCccCcE
Q 020238           95 MYLNGT-AIE--ELPSSIECLSGLSALYLDHC-KRLKS-LPSSLCKLK-SLNSIYLRWCS--SL-KSLPNELGNLEALNS  165 (329)
Q Consensus        95 L~l~~~-~i~--~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~-~L~~L~l~~~~--~~-~~~~~~~~~l~~L~~  165 (329)
                      |++++| .++  .++..+..+++|++|++++| .+... ++..+..++ +|++|++++|.  .. ..++..+..+++|+.
T Consensus       147 L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~  226 (336)
T 2ast_B          147 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH  226 (336)
T ss_dssp             EECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSE
T ss_pred             EECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCE
Confidence            999998 677  36777889999999999999 65443 566678899 99999999984  33 334556678899999


Q ss_pred             EeccCcc-ccc-cChhhhhccccCCCCCccEEEcCCCC-CCC-cchhhcCCCCccEEEcCCCcCccCChhhhcC-Cccce
Q 020238          166 LNAEGTA-IRE-VPLSIVRLNNFDGLQNLTSLYLTDCG-ITE-LPENLGQLSLLLELYLEKNNFERLPESIIHL-SKLAY  240 (329)
Q Consensus       166 L~l~~~~-l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~-~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~-~~L~~  240 (329)
                      |++++|. ++. .+..      +..+++|++|++++|. +++ ....+..+++|+.|++++| ++.  ..+..+ ..+..
T Consensus       227 L~l~~~~~l~~~~~~~------l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~--~~~~~l~~~l~~  297 (336)
T 2ast_B          227 LDLSDSVMLKNDCFQE------FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD--GTLQLLKEALPH  297 (336)
T ss_dssp             EECTTCTTCCGGGGGG------GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT--TCHHHHHHHSTT
T ss_pred             EeCCCCCcCCHHHHHH------HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH--HHHHHHHhhCcc
Confidence            9999998 553 2222      4667999999999994 433 2235778999999999999 442  122232 23666


Q ss_pred             ecccccccccccCC
Q 020238          241 LKLSYCERLQSLPK  254 (329)
Q Consensus       241 L~l~~~~~l~~~~~  254 (329)
                      |++++|...+..|+
T Consensus       298 L~l~~n~l~~~~~~  311 (336)
T 2ast_B          298 LQINCSHFTTIARP  311 (336)
T ss_dssp             SEESCCCSCCTTCS
T ss_pred             eEEecccCccccCC
Confidence            66877665444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=1.1e-18  Score=145.39  Aligned_cols=176  Identities=19%  Similarity=0.255  Sum_probs=111.0

Q ss_pred             ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccch-hhhcCCCCCEEEc
Q 020238           43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPS-SIECLSGLSALYL  120 (329)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l  120 (329)
                      +..++++++++. ...+|..+.  ++++.|++++|.+....+ .+..+++|++|++++|.+..++. .+..+++|++|++
T Consensus        14 ~~~~~l~~~~~~-l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L   90 (251)
T 3m19_A           14 EGKKEVDCQGKS-LDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL   90 (251)
T ss_dssp             GGGTEEECTTCC-CSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCeEEecCCCC-ccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence            456677777754 334555443  467777777776654444 35555777777777777765443 3566777777777


Q ss_pred             CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238          121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC  200 (329)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  200 (329)
                      ++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+..++...     +..+++|++|++++|
T Consensus        91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGA-----FDKLTNLQTLSLSTN  165 (251)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEEECCSS
T ss_pred             CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHH-----cCcCcCCCEEECCCC
Confidence            776655444455666777777777776555443344566677777777777766665533     455667777777777


Q ss_pred             CCCCcch-hhcCCCCccEEEcCCCcCc
Q 020238          201 GITELPE-NLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       201 ~l~~~~~-~~~~~~~L~~L~l~~~~i~  226 (329)
                      .+++++. .+..+++|+.|++++|.+.
T Consensus       166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          166 QLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            7766544 4556667777777777665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=3.7e-19  Score=155.61  Aligned_cols=234  Identities=16%  Similarity=0.135  Sum_probs=156.2

Q ss_pred             eEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc--ccCCCCCccE-EE
Q 020238           20 KQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEV-MY   96 (329)
Q Consensus        20 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~-L~   96 (329)
                      +.++.++++ ++.+|.  .+  .+++++|++++|.+...-+.+|.++++|++|++++|.+.+.++  .+..++++.. +.
T Consensus        12 ~~v~C~~~~-Lt~iP~--~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~   86 (350)
T 4ay9_X           12 RVFLCQESK-VTEIPS--DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   86 (350)
T ss_dssp             TEEEEESTT-CCSCCT--TC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred             CEEEecCCC-CCccCc--Cc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence            455555544 666664  23  3578888888877554333467778888888888877665554  3455566554 55


Q ss_pred             ecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCc-ccCCCc-cCcEEeccCccc
Q 020238           97 LNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPN-ELGNLE-ALNSLNAEGTAI  173 (329)
Q Consensus        97 l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~-~L~~L~l~~~~l  173 (329)
                      +.+|.+..++ ..+..+++|++|++++|.+....+..+....++..+++.++..+..++. .|..+. .++.|++++|++
T Consensus        87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           87 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             ccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            5667777664 4567788888888888776554444455556677788776655555543 455554 577888888888


Q ss_pred             cccChhhhhccccCCCCCccEEEcCC-CCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccc
Q 020238          174 REVPLSIVRLNNFDGLQNLTSLYLTD-CGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQS  251 (329)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~  251 (329)
                      +.++...     + ...+++.+++.+ |.++.+|. .+..+++|+.|++++|+|+.+|.  ..+.+|+.|.+.++..++.
T Consensus       167 ~~i~~~~-----f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~--~~~~~L~~L~~l~~~~l~~  238 (350)
T 4ay9_X          167 QEIHNSA-----F-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS--YGLENLKKLRARSTYNLKK  238 (350)
T ss_dssp             CEECTTS-----S-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS--SSCTTCCEEECTTCTTCCC
T ss_pred             cCCChhh-----c-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh--hhhccchHhhhccCCCcCc
Confidence            8777654     2 235688888865 56777775 45778888888888888888874  2355566666666666777


Q ss_pred             cC--CCCCCccEEeccC
Q 020238          252 LP--KLPCNLSELDAHH  266 (329)
Q Consensus       252 ~~--~~~~~L~~L~l~~  266 (329)
                      +|  +.+++|+.+++.+
T Consensus       239 lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          239 LPTLEKLVALMEASLTY  255 (350)
T ss_dssp             CCCTTTCCSCCEEECSC
T ss_pred             CCCchhCcChhhCcCCC
Confidence            77  4567788888765

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.2e-18  Score=150.63  Aligned_cols=236  Identities=19%  Similarity=0.136  Sum_probs=182.5

Q ss_pred             cEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCcccc-ccch-hhhcCCCCCEEE-cC
Q 020238           46 VNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE-ELPS-SIECLSGLSALY-LD  121 (329)
Q Consensus        46 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~-~~~~-~~~~l~~L~~L~-l~  121 (329)
                      ++++-+++. ++.+|..+  .+++++|++++|.+....+ .+.++++|++|++++|.+. .++. .+..+++++++. +.
T Consensus        12 ~~v~C~~~~-Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESK-VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTT-CCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCC-CCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            556666644 55677655  3689999999987653333 3677899999999999975 4554 467888888754 45


Q ss_pred             CCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccC-ccccccChhhhhccccCCC-CCccEEEcCC
Q 020238          122 HCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEG-TAIREVPLSIVRLNNFDGL-QNLTSLYLTD  199 (329)
Q Consensus       122 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~l~~~~~~~~~~~~~~~~-~~L~~L~l~~  199 (329)
                      +|.+....+..|..+++|++|++++|......+..+....++..+++.+ +.+..++...     +..+ ..++.|++++
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~-----f~~~~~~l~~L~L~~  163 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS-----FVGLSFESVILWLNK  163 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS-----STTSBSSCEEEECCS
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccc-----hhhcchhhhhhcccc
Confidence            5665555577789999999999999877655445556666788888865 5677666543     3444 4689999999


Q ss_pred             CCCCCcchhhcCCCCccEEEcCC-CcCccCCh-hhhcCCccceecccccccccccC-CCCCCccEEeccCCCCCcCCCCC
Q 020238          200 CGITELPENLGQLSLLLELYLEK-NNFERLPE-SIIHLSKLAYLKLSYCERLQSLP-KLPCNLSELDAHHCTALESSPGL  276 (329)
Q Consensus       200 ~~l~~~~~~~~~~~~L~~L~l~~-~~i~~~~~-~l~~~~~L~~L~l~~~~~l~~~~-~~~~~L~~L~l~~c~~l~~~~~~  276 (329)
                      |.+++++.......+|+++++++ |.++.+|. .+..+++|+.|++++|. ++.+| ..+.+|+.|.+.++..++.+|. 
T Consensus       164 N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~-l~~lp~~~~~~L~~L~~l~~~~l~~lP~-  241 (350)
T 4ay9_X          164 NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARSTYNLKKLPT-  241 (350)
T ss_dssp             SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC-CCCCCSSSCTTCCEEECTTCTTCCCCCC-
T ss_pred             ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC-cCccChhhhccchHhhhccCCCcCcCCC-
Confidence            99999988888888999999985 68889984 67899999999999974 77777 4678999999999999999974 


Q ss_pred             CCCCCCCcEEEcCCC
Q 020238          277 VFPSRDPQYFDLRNN  291 (329)
Q Consensus       277 ~~~~~~L~~L~i~~~  291 (329)
                      +..+++|+.+++.+.
T Consensus       242 l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          242 LEKLVALMEASLTYP  256 (350)
T ss_dssp             TTTCCSCCEEECSCH
T ss_pred             chhCcChhhCcCCCC
Confidence            566788999998764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.80  E-value=1.2e-20  Score=165.86  Aligned_cols=244  Identities=16%  Similarity=0.081  Sum_probs=154.5

Q ss_pred             EEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccC----ccccCCC-cccEEeecCCCCCCCCc-ccCC----C-C
Q 020238           22 IISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP----PGIFRLE-FLKELDLWGCSKLKTLP-EISS----A-G   90 (329)
Q Consensus        22 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~-~~~~----~-~   90 (329)
                      +.++.+......+.  .+...++|++|++++|.+....+    ..+..++ +|++|++++|.+....+ .+..    . +
T Consensus         3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPA   80 (362)
T ss_dssp             EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred             cccccccchHHHHH--HHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCC
Confidence            45666653333332  34445569999999988655433    5667777 89999999987665433 2222    2 7


Q ss_pred             CccEEEecCccccccch-----hhhcC-CCCCEEEcCCCCCcccCCcc----ccC-CCCCcEEeccCCCCCCCC----Cc
Q 020238           91 NIEVMYLNGTAIEELPS-----SIECL-SGLSALYLDHCKRLKSLPSS----LCK-LKSLNSIYLRWCSSLKSL----PN  155 (329)
Q Consensus        91 ~L~~L~l~~~~i~~~~~-----~~~~l-~~L~~L~l~~~~~~~~~~~~----~~~-l~~L~~L~l~~~~~~~~~----~~  155 (329)
                      +|++|++++|.+...+.     .+..+ ++|++|++++|.+....+..    +.. .++|++|++++|......    +.
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            88888888888874332     24445 78888888888765544333    333 358888888887665432    23


Q ss_pred             ccCCCc-cCcEEeccCccccccChh-hhhccccCCC-CCccEEEcCCCCCCC-----cchhhcC-CCCccEEEcCCCcCc
Q 020238          156 ELGNLE-ALNSLNAEGTAIREVPLS-IVRLNNFDGL-QNLTSLYLTDCGITE-----LPENLGQ-LSLLLELYLEKNNFE  226 (329)
Q Consensus       156 ~~~~l~-~L~~L~l~~~~l~~~~~~-~~~~~~~~~~-~~L~~L~l~~~~l~~-----~~~~~~~-~~~L~~L~l~~~~i~  226 (329)
                      .+...+ +|+.|++++|.+...... +..  .+..+ ++|++|++++|.+++     ++..+.. .++|+.|++++|.++
T Consensus       161 ~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~--~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~  238 (362)
T 3goz_A          161 ILAAIPANVNSLNLRGNNLASKNCAELAK--FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLH  238 (362)
T ss_dssp             HHHTSCTTCCEEECTTSCGGGSCHHHHHH--HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCC
T ss_pred             HHhcCCccccEeeecCCCCchhhHHHHHH--HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCC
Confidence            334444 788888888888755432 111  03344 488888888888876     5555555 458888888888887


Q ss_pred             cCC-----hhhhcCCccceeccccccc-------ccccC---CCCCCccEEeccCCCC
Q 020238          227 RLP-----ESIIHLSKLAYLKLSYCER-------LQSLP---KLPCNLSELDAHHCTA  269 (329)
Q Consensus       227 ~~~-----~~l~~~~~L~~L~l~~~~~-------l~~~~---~~~~~L~~L~l~~c~~  269 (329)
                      ..+     ..+..+++|+.|++++|..       +..++   ...++|+.|++++|..
T Consensus       239 ~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l  296 (362)
T 3goz_A          239 GPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI  296 (362)
T ss_dssp             CCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBC
T ss_pred             cHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcC
Confidence            443     2345567888888888751       11111   2345677777777763

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.80  E-value=3.5e-21  Score=180.10  Aligned_cols=131  Identities=17%  Similarity=0.099  Sum_probs=61.0

Q ss_pred             cCCCCceEEEecCCCCcccCCC---cccccCcccCcEEeccCCCCC----cccCccccCCCcccEEeecCCCCCCC----
Q 020238           14 QHNGKLKQIISRASNFFTKSPN---HSLTLHLDKLVNLNLNNCKSL----RILPPGIFRLEFLKELDLWGCSKLKT----   82 (329)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~----   82 (329)
                      ..|++|++|++++|. +.+...   ......+++|++|++++|.+.    ..++..+..+++|++|++++|...+.    
T Consensus       161 ~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~  239 (592)
T 3ogk_B          161 THCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFF  239 (592)
T ss_dssp             HHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHH
T ss_pred             hhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHH
Confidence            456666666666664 222110   012334555555555555443    12233334455566666655432210    


Q ss_pred             -----------------------CcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccC-CccccCCCC
Q 020238           83 -----------------------LPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSL-PSSLCKLKS  138 (329)
Q Consensus        83 -----------------------~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~  138 (329)
                                             ...+..+++|+.+++++.....++..+..+++|++|++++|.+.... ...+..+++
T Consensus       240 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~  319 (592)
T 3ogk_B          240 KAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPN  319 (592)
T ss_dssp             HHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTT
T ss_pred             hhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcC
Confidence                                   11222334455555544433344555555666666666666532221 122344555


Q ss_pred             CcEEecc
Q 020238          139 LNSIYLR  145 (329)
Q Consensus       139 L~~L~l~  145 (329)
                      |+.|++.
T Consensus       320 L~~L~L~  326 (592)
T 3ogk_B          320 LEVLETR  326 (592)
T ss_dssp             CCEEEEE
T ss_pred             CCEEecc
Confidence            5555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.80  E-value=4.2e-21  Score=179.63  Aligned_cols=233  Identities=17%  Similarity=0.074  Sum_probs=139.2

Q ss_pred             ccCCCcccEEeecCCCCCCCCcc-cCCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcc-cCCccccCCCC
Q 020238           63 IFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLK-SLPSSLCKLKS  138 (329)
Q Consensus        63 ~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~  138 (329)
                      +..+++|+.++++++. ...++. +..+++|++|++++|.+.  .+...+..+++|++|++.+ .... .++..+..+++
T Consensus       266 l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~~~~~~~  343 (592)
T 3ogk_B          266 LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVLAQYCKQ  343 (592)
T ss_dssp             CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHHHHHCTT
T ss_pred             hhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHHHHhCCC
Confidence            3445566666665532 223343 334578888999888765  2334457788888888884 3322 23333456788


Q ss_pred             CcEEeccC----------CCCCCC--CCcccCCCccCcEEeccCccccccCh-hhhhccccCCCCCccEEEcC----CCC
Q 020238          139 LNSIYLRW----------CSSLKS--LPNELGNLEALNSLNAEGTAIREVPL-SIVRLNNFDGLQNLTSLYLT----DCG  201 (329)
Q Consensus       139 L~~L~l~~----------~~~~~~--~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~----~~~  201 (329)
                      |++|++++          |...+.  ++.....+++|+.|++..+.+..... .+     ...+++|++|+++    .+.
T Consensus       344 L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l-----~~~~~~L~~L~l~~~~~~n~  418 (592)
T 3ogk_B          344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESI-----GTYLKNLCDFRLVLLDREER  418 (592)
T ss_dssp             CCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHH-----HHHCCSCCEEEEEECSCCSC
T ss_pred             CCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHH-----HhhCCCCcEEEEeecCCCcc
Confidence            88888884          444332  11223457788888887776653211 11     1236788888885    456


Q ss_pred             CCCc------chhhcCCCCccEEEcCCCc--Cc-cCChhh-hcCCccceeccccccccc----ccCCCCCCccEEeccCC
Q 020238          202 ITEL------PENLGQLSLLLELYLEKNN--FE-RLPESI-IHLSKLAYLKLSYCERLQ----SLPKLPCNLSELDAHHC  267 (329)
Q Consensus       202 l~~~------~~~~~~~~~L~~L~l~~~~--i~-~~~~~l-~~~~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~c  267 (329)
                      +++.      +..+..+++|+.|++++|.  ++ ..+..+ ..+++|+.|++++|..-.    .+...+++|++|++++|
T Consensus       419 l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          419 ITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC  498 (592)
T ss_dssp             CSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred             ccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence            6653      2335568888888887653  44 222333 347788888888776321    12245678888888888


Q ss_pred             CCCcC-CCCCCCCCCCCcEEEcCCCcccchhHHHHHh
Q 020238          268 TALES-SPGLVFPSRDPQYFDLRNNLKLDRNEIREIL  303 (329)
Q Consensus       268 ~~l~~-~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~  303 (329)
                      +.... ++.....+++|++|++++|. +++.+...+.
T Consensus       499 ~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~  534 (592)
T 3ogk_B          499 CFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQ  534 (592)
T ss_dssp             CCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGG
T ss_pred             CCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHH
Confidence            73211 22233356678888888887 7776655543

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=5e-18  Score=141.42  Aligned_cols=178  Identities=16%  Similarity=0.157  Sum_probs=146.9

Q ss_pred             CCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCccEE
Q 020238           17 GKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVM   95 (329)
Q Consensus        17 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L   95 (329)
                      ...++++++++. +...|.  .+  .++++.|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|
T Consensus        14 ~~~~~l~~~~~~-l~~~p~--~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L   88 (251)
T 3m19_A           14 EGKKEVDCQGKS-LDSVPS--GI--PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTL   88 (251)
T ss_dssp             GGGTEEECTTCC-CSSCCS--CC--CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCeEEecCCCC-ccccCC--CC--CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEE
Confidence            567889998876 777775  33  26899999999988777777888999999999999887665553 5667999999


Q ss_pred             EecCccccccch-hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccc
Q 020238           96 YLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR  174 (329)
Q Consensus        96 ~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  174 (329)
                      ++++|.+..++. .+..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.+.
T Consensus        89 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  168 (251)
T 3m19_A           89 GLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ  168 (251)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCC
Confidence            999999997764 5688999999999998876555556788999999999998776555557889999999999999999


Q ss_pred             ccChhhhhccccCCCCCccEEEcCCCCCCC
Q 020238          175 EVPLSIVRLNNFDGLQNLTSLYLTDCGITE  204 (329)
Q Consensus       175 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  204 (329)
                      .++...     +..+++|+.|++++|.+..
T Consensus       169 ~~~~~~-----~~~l~~L~~L~l~~N~~~c  193 (251)
T 3m19_A          169 SVPHGA-----FDRLGKLQTITLFGNQFDC  193 (251)
T ss_dssp             CCCTTT-----TTTCTTCCEEECCSCCBCT
T ss_pred             ccCHHH-----HhCCCCCCEEEeeCCceeC
Confidence            887654     6778999999999998764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=5.2e-18  Score=156.28  Aligned_cols=193  Identities=21%  Similarity=0.266  Sum_probs=130.3

Q ss_pred             CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEe
Q 020238           18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL   97 (329)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l   97 (329)
                      +++.|++++|. +..+|.  .+  +++|+.|++++|.+. .+|   ..+++|++|++++|.+.. +|.+.  .+|+.|++
T Consensus        60 ~L~~L~Ls~n~-L~~lp~--~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~l~--~~L~~L~L  127 (571)
T 3cvr_A           60 QFSELQLNRLN-LSSLPD--NL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPELP--ASLKHLDV  127 (571)
T ss_dssp             TCSEEECCSSC-CSCCCS--CC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCCCC--TTCCEEEC
T ss_pred             CccEEEeCCCC-CCccCH--hH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cchhh--cCCCEEEC
Confidence            78888888876 555654  23  367888888887755 566   346788888888876554 55532  27888888


Q ss_pred             cCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccC
Q 020238           98 NGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVP  177 (329)
Q Consensus        98 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~  177 (329)
                      ++|.++.+|.   .+++|++|++++|.+.. +|.   .+++|+.|++++|.+.. +|. +.  ++|+.|++++|.+..+|
T Consensus       128 s~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~~lp  196 (571)
T 3cvr_A          128 DNNQLTMLPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLESLP  196 (571)
T ss_dssp             CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCSSCC
T ss_pred             CCCcCCCCCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCCchh
Confidence            8888877766   57788888888877544 544   46778888888866554 665 54  77888888888877776


Q ss_pred             hhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc-cCChhhhcC
Q 020238          178 LSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE-RLPESIIHL  235 (329)
Q Consensus       178 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~  235 (329)
                      . +.. .-....+.|+.|++++|.++.+|..+..+++|+.|++++|.++ .+|..+..+
T Consensus       197 ~-~~~-~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          197 A-VPV-RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             C-CC---------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             h-HHH-hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            5 311 0011122238888888888887777777888888888888776 555555543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=6.4e-18  Score=155.69  Aligned_cols=181  Identities=18%  Similarity=0.240  Sum_probs=150.0

Q ss_pred             cCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCC
Q 020238           44 KLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHC  123 (329)
Q Consensus        44 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~  123 (329)
                      +|+.|++++|.+.+ +|..+  +++|++|++++|.+. .+|  ..+++|+.|++++|.++.+|. +..  +|++|++++|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP--ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSS
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCC
Confidence            89999999987654 77655  378999999998765 666  446999999999999998887 544  9999999998


Q ss_pred             CCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC
Q 020238          124 KRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT  203 (329)
Q Consensus       124 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  203 (329)
                      .+.. +|.   .+++|+.|++++|.+.. +|.   .+++|+.|++++|.+..+|. +      .  ++|+.|++++|.++
T Consensus       131 ~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~lp~-l------~--~~L~~L~Ls~N~L~  193 (571)
T 3cvr_A          131 QLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTFLPE-L------P--ESLEALDVSTNLLE  193 (571)
T ss_dssp             CCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC-C------C--TTCCEEECCSSCCS
T ss_pred             cCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCCcch-h------h--CCCCEEECcCCCCC
Confidence            8655 655   68899999999977654 665   56899999999999998876 3      2  89999999999999


Q ss_pred             CcchhhcCCCCc-------cEEEcCCCcCccCChhhhcCCccceecccccccccccC
Q 020238          204 ELPENLGQLSLL-------LELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLP  253 (329)
Q Consensus       204 ~~~~~~~~~~~L-------~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~  253 (329)
                      .+|. +..  +|       +.|++++|+|+.+|..+..+++|+.|++++|+..+.+|
T Consensus       194 ~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~p  247 (571)
T 3cvr_A          194 SLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIR  247 (571)
T ss_dssp             SCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSSSCCHHHH
T ss_pred             chhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCCcCCCcCH
Confidence            9887 543  77       99999999999999988899999999999998765555

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=6.9e-18  Score=143.58  Aligned_cols=172  Identities=25%  Similarity=0.329  Sum_probs=82.9

Q ss_pred             ccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEE
Q 020238           39 TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSAL  118 (329)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L  118 (329)
                      ...+++|+.|++++|.+.. ++ .+..+++|++|++++|.+.. ++.+..+++|+.|++++|.+..++. +..+++|++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~-~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  117 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSL  117 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEE
T ss_pred             hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCC-CcccccCCCCCEEECCCCcCCCChh-hccCCCCCEE
Confidence            3445566666666654332 22 24455566666666554432 2224445555555555555554432 4555555555


Q ss_pred             EcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238          119 YLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT  198 (329)
Q Consensus       119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  198 (329)
                      ++++|.+.. + ..+..+++|+.|++++|.....  ..+..+++|+.|++++|.+..++.       +..+++|+.|+++
T Consensus       118 ~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~-------l~~l~~L~~L~L~  186 (291)
T 1h6t_A          118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-------LAGLTKLQNLYLS  186 (291)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCCEEECC
T ss_pred             ECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh-------hcCCCccCEEECC
Confidence            555554332 2 2344455555555555433322  234444455555555554444332       2334455555555


Q ss_pred             CCCCCCcchhhcCCCCccEEEcCCCcCc
Q 020238          199 DCGITELPENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       199 ~~~l~~~~~~~~~~~~L~~L~l~~~~i~  226 (329)
                      +|.+++++. +..+++|+.|++++|+++
T Consensus       187 ~N~i~~l~~-l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          187 KNHISDLRA-LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             SSCCCBCGG-GTTCTTCSEEEEEEEEEE
T ss_pred             CCcCCCChh-hccCCCCCEEECcCCccc
Confidence            555544432 444555555555555444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=8.7e-18  Score=142.96  Aligned_cols=191  Identities=27%  Similarity=0.346  Sum_probs=155.3

Q ss_pred             cccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcC
Q 020238           42 LDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLD  121 (329)
Q Consensus        42 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~  121 (329)
                      +..+..+.+.+.......  ....+++|++|++++|.+ ..++.+..+++|+.|++++|.+..++. +..+++|++|+++
T Consensus        23 l~~~~~~~l~~~~~~~~~--~~~~l~~L~~L~l~~~~i-~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~   98 (291)
T 1h6t_A           23 FAETIKDNLKKKSVTDAV--TQNELNSIDQIIANNSDI-KSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLD   98 (291)
T ss_dssp             HHHHHHHHTTCSCTTSEE--CHHHHHTCCEEECTTSCC-CCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECC
T ss_pred             HHHHHHHHhcCCCccccc--chhhcCcccEEEccCCCc-ccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECC
Confidence            334555566665443332  235688999999999765 455777788999999999999998877 8899999999999


Q ss_pred             CCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCC
Q 020238          122 HCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG  201 (329)
Q Consensus       122 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  201 (329)
                      +|.+.. ++ .+..+++|+.|++++|.... + ..+..+++|+.|++++|.+..++ .      +..+++|+.|++++|.
T Consensus        99 ~n~l~~-~~-~l~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~~-~------l~~l~~L~~L~L~~N~  167 (291)
T 1h6t_A           99 ENKVKD-LS-SLKDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDIT-V------LSRLTKLDTLSLEDNQ  167 (291)
T ss_dssp             SSCCCC-GG-GGTTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCCG-G------GGGCTTCSEEECCSSC
T ss_pred             CCcCCC-Ch-hhccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcch-h------hccCCCCCEEEccCCc
Confidence            988644 33 48889999999999987655 3 46788999999999999988762 2      5678999999999999


Q ss_pred             CCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccc
Q 020238          202 ITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERL  249 (329)
Q Consensus       202 l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l  249 (329)
                      +++++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|+..
T Consensus       168 l~~~~~-l~~l~~L~~L~L~~N~i~~l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          168 ISDIVP-LAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CCCCGG-GTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEEEEEEEEE
T ss_pred             cccchh-hcCCCccCEEECCCCcCCCCh-hhccCCCCCEEECcCCccc
Confidence            999876 888999999999999999886 4889999999999998643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.77  E-value=7.8e-18  Score=136.14  Aligned_cols=154  Identities=20%  Similarity=0.297  Sum_probs=74.2

Q ss_pred             CCccEEEecCccccccchh-hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEec
Q 020238           90 GNIEVMYLNGTAIEELPSS-IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA  168 (329)
Q Consensus        90 ~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  168 (329)
                      +++++|+++++.+..++.. +..+++|++|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  107 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL  107 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence            4555666665555544332 345555555555555443333333445555555555554444332333445555555555


Q ss_pred             cCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238          169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       169 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~  247 (329)
                      ++|.+..++...     +..+++|++|++++|.+++++.. +..+++|+.|++++|.+.      ..++.|+.|++++|.
T Consensus       108 ~~N~l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~------~~~~~l~~L~~~~n~  176 (208)
T 2o6s_A          108 NTNQLQSLPDGV-----FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD------CTCPGIRYLSEWINK  176 (208)
T ss_dssp             CSSCCCCCCTTT-----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC------CCTTTTHHHHHHHHH
T ss_pred             CCCcCcccCHhH-----hccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee------cCCCCHHHHHHHHHh
Confidence            555555444332     34445555555555555544332 344555555555555332      223344555555444


Q ss_pred             cccccCC
Q 020238          248 RLQSLPK  254 (329)
Q Consensus       248 ~l~~~~~  254 (329)
                      ..+.+|.
T Consensus       177 ~~g~ip~  183 (208)
T 2o6s_A          177 HSGVVRN  183 (208)
T ss_dssp             CTTTBBC
T ss_pred             CCceeec
Confidence            4444443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=1.5e-17  Score=154.78  Aligned_cols=176  Identities=26%  Similarity=0.332  Sum_probs=119.0

Q ss_pred             cccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCE
Q 020238           38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSA  117 (329)
Q Consensus        38 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~  117 (329)
                      ....+++|+.|++++|.+.. ++ .+..+++|+.|++++|.+.. ++.+..+++|+.|++++|.+..++ .+..+++|++
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~-~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~  113 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTD-IKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKS  113 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCC-CGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCE
T ss_pred             chhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCC-ChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCE
Confidence            35667788888888776433 33 46677888888888876543 334666777888888877777654 5677777777


Q ss_pred             EEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEc
Q 020238          118 LYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYL  197 (329)
Q Consensus       118 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  197 (329)
                      |++++|.+.. + ..+..+++|+.|++++|.....  ..+..+++|+.|++++|.+..++.       +..+++|+.|++
T Consensus       114 L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-------l~~l~~L~~L~L  182 (605)
T 1m9s_A          114 LSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-------LAGLTKLQNLYL  182 (605)
T ss_dssp             EECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-------GTTCTTCCEEEC
T ss_pred             EEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-------hccCCCCCEEEC
Confidence            7777776543 2 3466677777777777655543  456677777777777777665543       345677777777


Q ss_pred             CCCCCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238          198 TDCGITELPENLGQLSLLLELYLEKNNFERLP  229 (329)
Q Consensus       198 ~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~  229 (329)
                      ++|.+++++ .+..+++|+.|++++|++...|
T Consensus       183 s~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          183 SKNHISDLR-ALAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CSSCCCBCG-GGTTCTTCSEEECCSEEEECCC
T ss_pred             cCCCCCCCh-HHccCCCCCEEEccCCcCcCCc
Confidence            777777764 4666777777777777666443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.3e-17  Score=133.73  Aligned_cols=108  Identities=20%  Similarity=0.200  Sum_probs=50.7

Q ss_pred             ccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCC-CCCcchhhcC
Q 020238          133 LCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG-ITELPENLGQ  211 (329)
Q Consensus       133 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~~~~~~~~~  211 (329)
                      +..+++|++|++++|......+..+..+++|+.|++++|.+.......     +..+++|++|++++|. +++++ .+..
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~-----l~~l~~L~~L~L~~n~~i~~~~-~l~~  157 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK-----INTLPKVNSIDLSYNGAITDIM-PLKT  157 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHH-----HTTCSSCCEEECCSCTBCCCCG-GGGG
T ss_pred             hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHH-----HhhCCCCCEEEccCCCCccccH-hhcC
Confidence            333444444444444333333334444444444444444444311111     2344555555555554 44444 3455


Q ss_pred             CCCccEEEcCCCcCccCChhhhcCCccceecccccc
Q 020238          212 LSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       212 ~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~  247 (329)
                      +++|+.|++++|+++.++ .+..+++|+.|++++|+
T Consensus       158 l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          158 LPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred             CCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence            555555555555555544 44555555555555543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=3.7e-17  Score=130.98  Aligned_cols=153  Identities=20%  Similarity=0.219  Sum_probs=114.8

Q ss_pred             cCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEe
Q 020238           64 FRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIY  143 (329)
Q Consensus        64 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  143 (329)
                      ..+++|++|++++|.+. .++.+..+++|++|++++|.+..++ .+..+++|++|++++|.+....+..+..+++|++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLTGIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCTTGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred             hhcCCccEEeccCCCcc-ChHHHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence            55778888888887654 5556677788888888888766554 577788888888888777666667777888888888


Q ss_pred             ccCCCCCCCCCcccCCCccCcEEeccCcc-ccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCC
Q 020238          144 LRWCSSLKSLPNELGNLEALNSLNAEGTA-IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEK  222 (329)
Q Consensus       144 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  222 (329)
                      +++|......+..+..+++|+.|++++|. +..++ .      +..+++|+.|++++|.+++++ .+..+++|+.|++++
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~------l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P------LKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G------GGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECB
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h------hcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeC
Confidence            88877776666777788888888888886 66664 2      456788888888888888876 577788888888888


Q ss_pred             CcCc
Q 020238          223 NNFE  226 (329)
Q Consensus       223 ~~i~  226 (329)
                      |+|.
T Consensus       191 N~i~  194 (197)
T 4ezg_A          191 QTIG  194 (197)
T ss_dssp             C---
T ss_pred             cccC
Confidence            8765

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.74  E-value=8.6e-17  Score=129.98  Aligned_cols=176  Identities=19%  Similarity=0.194  Sum_probs=114.2

Q ss_pred             EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccc
Q 020238           94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAI  173 (329)
Q Consensus        94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  173 (329)
                      .++.+++.+..+|..+  .+++++|++++|.+....+..+..+++|++|++++|......+..|..+++|+.|++++|.+
T Consensus        11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l   88 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL   88 (208)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence            4455555555555433  35777777777765544444566777777777777655544344466777777777777777


Q ss_pred             cccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCccCCh-hhhcCCccceecccccccccc
Q 020238          174 REVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPE-SIIHLSKLAYLKLSYCERLQS  251 (329)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~l~~  251 (329)
                      ..++...     +..+++|++|++++|.+++++.. +..+++|+.|++++|+++.++. .+..+++|+.|++++|+... 
T Consensus        89 ~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-  162 (208)
T 2o6s_A           89 QSLPNGV-----FDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-  162 (208)
T ss_dssp             CCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-
T ss_pred             CccCHhH-----hcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-
Confidence            7665544     45677777777777777776543 5667777777777777776653 35667777777777775433 


Q ss_pred             cCCCCCCccEEeccCCCCCcCCCCCCCCC
Q 020238          252 LPKLPCNLSELDAHHCTALESSPGLVFPS  280 (329)
Q Consensus       252 ~~~~~~~L~~L~l~~c~~l~~~~~~~~~~  280 (329)
                         .+++|+.|+++.|...+.+|..+..+
T Consensus       163 ---~~~~l~~L~~~~n~~~g~ip~~~~~l  188 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSGVVRNSAGSV  188 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred             ---CCCCHHHHHHHHHhCCceeeccCccc
Confidence               23467777777776666666555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=7.5e-17  Score=132.28  Aligned_cols=131  Identities=24%  Similarity=0.313  Sum_probs=60.3

Q ss_pred             CCccEEEecCcccccc-chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEec
Q 020238           90 GNIEVMYLNGTAIEEL-PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA  168 (329)
Q Consensus        90 ~~L~~L~l~~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  168 (329)
                      ++|+.|++++|.+..+ +..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..|..+++|+.|++
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L  119 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFM  119 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEec
Confidence            4555555555555533 333445555555555554442222233444555555555554433332333444455555555


Q ss_pred             cCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCc
Q 020238          169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       169 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~  226 (329)
                      ++|.+..+|..+      ..+++|+.|++++|.+++++. .+..+++|+.|++++|.+.
T Consensus       120 s~N~l~~lp~~~------~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          120 CCNKLTELPRGI------ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSSCCCSCCTTG------GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             cCCcccccCccc------ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence            555544444332      234445555555554444432 2344445555555554443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.73  E-value=7.5e-20  Score=171.16  Aligned_cols=286  Identities=15%  Similarity=0.068  Sum_probs=154.6

Q ss_pred             hhhhccCCCCceEEEecCCCCcccCCC---cccccCcccCcEEeccCCC--CCc-ccCccccCCCcccEEeecCCCCCCC
Q 020238            9 LWDSVQHNGKLKQIISRASNFFTKSPN---HSLTLHLDKLVNLNLNNCK--SLR-ILPPGIFRLEFLKELDLWGCSKLKT   82 (329)
Q Consensus         9 l~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~~~~~~   82 (329)
                      ++.....+++|++|++++|. +.+...   ......+++|++|++++|.  +.. .++.....+++|++|++++|.....
T Consensus       148 l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~  226 (594)
T 2p1m_B          148 LAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK  226 (594)
T ss_dssp             HHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH
T ss_pred             HHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH
Confidence            44445678899999998887 333221   1123467788888888775  111 1222223467777777777622111


Q ss_pred             Ccc-cC------------------------------------------------------CCCCccEEEecCcccc--cc
Q 020238           83 LPE-IS------------------------------------------------------SAGNIEVMYLNGTAIE--EL  105 (329)
Q Consensus        83 ~~~-~~------------------------------------------------------~~~~L~~L~l~~~~i~--~~  105 (329)
                      ++. +.                                                      .+++|+.|+++++.+.  .+
T Consensus       227 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l  306 (594)
T 2p1m_B          227 LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDL  306 (594)
T ss_dssp             HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHH
T ss_pred             HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHH
Confidence            111 11                                                      1244555555544433  11


Q ss_pred             chhhhcCCCCCEEEcCCCCCcc-cCCccccCCCCCcEEeccCC--------CCCCCC-Cccc-CCCccCcEEeccCcccc
Q 020238          106 PSSIECLSGLSALYLDHCKRLK-SLPSSLCKLKSLNSIYLRWC--------SSLKSL-PNEL-GNLEALNSLNAEGTAIR  174 (329)
Q Consensus       106 ~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~--------~~~~~~-~~~~-~~l~~L~~L~l~~~~l~  174 (329)
                      ...+..+++|++|++.+| ... .++.....+++|++|++.+|        ...+.. ...+ ..+++|+.|.+.++.+.
T Consensus       307 ~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~  385 (594)
T 2p1m_B          307 VKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMT  385 (594)
T ss_dssp             HHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCC
T ss_pred             HHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcC
Confidence            222334455555555544 111 11111223555566655322        111100 0011 13556666666555554


Q ss_pred             ccChhhhhccccCCCCCccEEEcC--C----CCCCCc------chhhcCCCCccEEEcCCCcCc-cCChhhhc-CCccce
Q 020238          175 EVPLSIVRLNNFDGLQNLTSLYLT--D----CGITEL------PENLGQLSLLLELYLEKNNFE-RLPESIIH-LSKLAY  240 (329)
Q Consensus       175 ~~~~~~~~~~~~~~~~~L~~L~l~--~----~~l~~~------~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~-~~~L~~  240 (329)
                      ......  +  ...+++|+.|+++  +    +.+++.      +..+..+++|+.|++++ .++ .....+.. +++|+.
T Consensus       386 ~~~~~~--l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~  460 (594)
T 2p1m_B          386 NAALIT--I--ARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEM  460 (594)
T ss_dssp             HHHHHH--H--HHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCE
T ss_pred             HHHHHH--H--HhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccE
Confidence            321111  0  1246888888888  3    456632      23356788899999977 555 33344444 888999


Q ss_pred             ecccccccccccC----CCCCCccEEeccCCCCCcCCC-CCCCCCCCCcEEEcCCCcccchhHHHHH
Q 020238          241 LKLSYCERLQSLP----KLPCNLSELDAHHCTALESSP-GLVFPSRDPQYFDLRNNLKLDRNEIREI  302 (329)
Q Consensus       241 L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~i~~~~~l~~~~~~~~  302 (329)
                      |++++|.......    ..+++|+.|++++|+...... .....+++|++|++++|+. +......+
T Consensus       461 L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l  526 (594)
T 2p1m_B          461 LSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV-SFGACKLL  526 (594)
T ss_dssp             EEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC-BHHHHHHH
T ss_pred             eeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC-CHHHHHHH
Confidence            9999887422111    346899999999998632221 2334467899999999976 66666554

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.73  E-value=8.7e-20  Score=170.71  Aligned_cols=155  Identities=17%  Similarity=0.194  Sum_probs=79.4

Q ss_pred             ccCCCCceEEEecCCCCcccCCCc-------------ccccCcccCcEEeccCCCCCcccCcccc-CCCcccEEeecCCC
Q 020238           13 VQHNGKLKQIISRASNFFTKSPNH-------------SLTLHLDKLVNLNLNNCKSLRILPPGIF-RLEFLKELDLWGCS   78 (329)
Q Consensus        13 ~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~   78 (329)
                      +.++++|++|++++|..+.+....             .....+++|++|++++|.+....+..+. .+++|++|++++|.
T Consensus        62 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  141 (594)
T 2p1m_B           62 IRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCE  141 (594)
T ss_dssp             HHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCE
T ss_pred             HhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcC
Confidence            445677777777777644332210             0123566777777777665444333333 46677777777664


Q ss_pred             CCCC--CcccC-CCCCccEEEecCccccc-----cchhhhcCCCCCEEEcCCCC--Ccc-cCCccccCCCCCcEEeccCC
Q 020238           79 KLKT--LPEIS-SAGNIEVMYLNGTAIEE-----LPSSIECLSGLSALYLDHCK--RLK-SLPSSLCKLKSLNSIYLRWC  147 (329)
Q Consensus        79 ~~~~--~~~~~-~~~~L~~L~l~~~~i~~-----~~~~~~~l~~L~~L~l~~~~--~~~-~~~~~~~~l~~L~~L~l~~~  147 (329)
                      ....  ++.+. .+++|++|++++|.+..     ++.....+++|++|++++|.  ... .+...+..+++|+.|++++|
T Consensus       142 ~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          142 GFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             CCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            3322  22222 45667777777666542     22222345667777776654  110 11111234566666666665


Q ss_pred             CCCCCCCcccCCCccCcEEe
Q 020238          148 SSLKSLPNELGNLEALNSLN  167 (329)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~L~  167 (329)
                      ...+.++..+..+++|+.|+
T Consensus       222 ~~~~~l~~~~~~~~~L~~L~  241 (594)
T 2p1m_B          222 VPLEKLATLLQRAPQLEELG  241 (594)
T ss_dssp             SCHHHHHHHHHHCTTCSEEE
T ss_pred             CcHHHHHHHHhcCCcceEcc
Confidence            33333333333444444444

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.73  E-value=3.6e-17  Score=152.21  Aligned_cols=184  Identities=22%  Similarity=0.254  Sum_probs=150.5

Q ss_pred             CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238            3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT   82 (329)
Q Consensus         3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   82 (329)
                      +++++.+. .+..+++|+.|++++|. +...+   .+..+++|+.|+|++|.+....+  +..+++|+.|++++|.+. .
T Consensus        30 ~~~i~~~~-~~~~L~~L~~L~l~~n~-i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~  101 (605)
T 1m9s_A           30 KKSVTDAV-TQNELNSIDQIIANNSD-IKSVQ---GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-D  101 (605)
T ss_dssp             CSCTTSEE-CHHHHTTCCCCBCTTCC-CCCCT---TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-C
T ss_pred             CCCccccc-chhcCCCCCEEECcCCC-CCCCh---HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-C
Confidence            34444442 24568899999999987 66555   47889999999999998665433  788999999999998654 5


Q ss_pred             CcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCcc
Q 020238           83 LPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEA  162 (329)
Q Consensus        83 ~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  162 (329)
                      ++.+..+++|+.|++++|.+..++ .+..+++|+.|++++|.+...  ..+..+++|+.|++++|.+....|  +..+++
T Consensus       102 l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~  176 (605)
T 1m9s_A          102 LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTK  176 (605)
T ss_dssp             CTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTT
T ss_pred             ChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCC
Confidence            677888899999999999998764 588999999999999886553  568899999999999987766544  889999


Q ss_pred             CcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc
Q 020238          163 LNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP  206 (329)
Q Consensus       163 L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~  206 (329)
                      |+.|++++|.+..++.       +..+++|+.|++++|.+.+.|
T Consensus       177 L~~L~Ls~N~i~~l~~-------l~~l~~L~~L~L~~N~l~~~p  213 (605)
T 1m9s_A          177 LQNLYLSKNHISDLRA-------LAGLKNLDVLELFSQECLNKP  213 (605)
T ss_dssp             CCEEECCSSCCCBCGG-------GTTCTTCSEEECCSEEEECCC
T ss_pred             CCEEECcCCCCCCChH-------HccCCCCCEEEccCCcCcCCc
Confidence            9999999999987642       567899999999999887644

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=8.8e-17  Score=131.01  Aligned_cols=132  Identities=21%  Similarity=0.255  Sum_probs=74.2

Q ss_pred             CCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEec
Q 020238           90 GNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA  168 (329)
Q Consensus        90 ~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  168 (329)
                      ++++.|++++|.+..++. .+..+++|++|++++|.+....+..|.++++|++|++++|.+...-+..|..+++|+.|++
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L  111 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL  111 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence            456666666666665443 4555666666666666555444555666666666666665444332333455566666666


Q ss_pred             cCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCc
Q 020238          169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       169 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~  226 (329)
                      ++|.+..++...     +..+++|+.|++++|.+++++. .+..+++|+.|++++|.+.
T Consensus       112 ~~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          112 NANKINCLRVDA-----FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CSSCCCCCCTTT-----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CCCCCCEeCHHH-----cCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            666655544332     4455566666666666655443 3445556666666665553

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=4e-16  Score=136.84  Aligned_cols=177  Identities=19%  Similarity=0.207  Sum_probs=128.1

Q ss_pred             CcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cC-CCCCccEEEecCccccccc-hhhhcCCCCCEEEcC
Q 020238           45 LVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-IS-SAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLD  121 (329)
Q Consensus        45 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~-~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~  121 (329)
                      -+.++++++. +..+|..+.  +.++.|++++|.+....+. +. .+++|+.|++++|.+..++ ..+..+++|++|+++
T Consensus        20 ~~~l~c~~~~-l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           20 SNILSCSKQQ-LPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TTEEECCSSC-CSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCC-cCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            3577888755 444666443  4588899998876554443 33 5688888888888888665 457888888888888


Q ss_pred             CCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCC
Q 020238          122 HCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCG  201 (329)
Q Consensus       122 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~  201 (329)
                      +|.+....+..|..+++|+.|++++|.+....+..|..+++|+.|++++|.+..++.....  .+..+++|+.|++++|.
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIK--DGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC------CTTCCEEECCSSC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhc--CcccCCcCCEEECCCCC
Confidence            8876655556678888888888888777766677788888888888888888887765410  01457888888888888


Q ss_pred             CCCcch-hhcCCCC--ccEEEcCCCcCc
Q 020238          202 ITELPE-NLGQLSL--LLELYLEKNNFE  226 (329)
Q Consensus       202 l~~~~~-~~~~~~~--L~~L~l~~~~i~  226 (329)
                      ++.++. .+..++.  ++.|++++|.+.
T Consensus       175 l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          175 LKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCccCHHHhhhccHhhcceEEecCCCcc
Confidence            888663 4556665  477888888775

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.70  E-value=3.8e-16  Score=127.28  Aligned_cols=150  Identities=22%  Similarity=0.189  Sum_probs=103.8

Q ss_pred             cEEeecCCCCCCCCcccCCCCCccEEEecCccccccc--hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCC
Q 020238           70 KELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELP--SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWC  147 (329)
Q Consensus        70 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  147 (329)
                      ++++++++.+. .+|.. -...++.|++++|.+..++  ..+..+++|++|++++|.+....+..+.++++|++|++++|
T Consensus        14 ~~l~~s~n~l~-~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCS-SCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEeEeCCCCcc-cCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence            47777776543 34421 1245678888888877653  23677888888888887765555556777788888888877


Q ss_pred             CCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCc
Q 020238          148 SSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~  226 (329)
                      ......+..|..+++|+.|++++|.+..++...     +..+++|+.|++++|.++++ |..+..+++|+.|++++|.+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDS-----FIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTS-----STTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhH-----cCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            666555556777777888888887777664433     56677777888887777775 556677777777877777765

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.69  E-value=7.3e-17  Score=135.18  Aligned_cols=172  Identities=18%  Similarity=0.177  Sum_probs=105.9

Q ss_pred             CcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEc
Q 020238           41 HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYL  120 (329)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l  120 (329)
                      .+.++..++++++.+.. ++ .+..+++|++|++++|.+. .++.+..+++|+.|++++|.+..++. +..+++|++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L   92 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLAGMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEEC
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cchHHhhCCCCCEEECCCCccCCChh-hccCCCCCEEEC
Confidence            45667777777766443 23 4566788888888886543 45566666777777777777776665 677777777777


Q ss_pred             CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238          121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC  200 (329)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  200 (329)
                      ++|.+.. ++. +.. ++|+.|++++|.... + ..+..+++|+.|++++|.+..++ .      +..+++|+.|++++|
T Consensus        93 ~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~~-~------l~~l~~L~~L~L~~N  160 (263)
T 1xeu_A           93 NRNRLKN-LNG-IPS-ACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSIV-M------LGFLSKLEVLDLHGN  160 (263)
T ss_dssp             CSSCCSC-CTT-CCC-SSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBCG-G------GGGCTTCCEEECTTS
T ss_pred             CCCccCC-cCc-ccc-CcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCCh-H------HccCCCCCEEECCCC
Confidence            7766433 332 222 666777776654443 2 23556666666666666666543 1      344566666666666


Q ss_pred             CCCCcchhhcCCCCccEEEcCCCcCccCC
Q 020238          201 GITELPENLGQLSLLLELYLEKNNFERLP  229 (329)
Q Consensus       201 ~l~~~~~~~~~~~~L~~L~l~~~~i~~~~  229 (329)
                      .++++ ..+..+++|+.|++++|.++..|
T Consensus       161 ~i~~~-~~l~~l~~L~~L~l~~N~~~~~~  188 (263)
T 1xeu_A          161 EITNT-GGLTRLKKVNWIDLTGQKCVNEP  188 (263)
T ss_dssp             CCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred             cCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence            66665 44555666666666666555333

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=1.8e-19  Score=166.58  Aligned_cols=177  Identities=21%  Similarity=0.197  Sum_probs=83.6

Q ss_pred             cCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCC-------------CCCCc-ccCCCCCccEEE-ecCccccc
Q 020238           40 LHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSK-------------LKTLP-EISSAGNIEVMY-LNGTAIEE  104 (329)
Q Consensus        40 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-------------~~~~~-~~~~~~~L~~L~-l~~~~i~~  104 (329)
                      ..+++|+.|++++|.+ +.+|..+..+++|++|++++|..             .+..| .+..+++|+.|+ ++.+.+..
T Consensus       346 ~~~~~L~~L~Ls~n~L-~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKS-TVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHH-HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhH-HhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            5577888888887653 46777777788888888765431             11111 112223344443 22222221


Q ss_pred             cch------hhhc--CCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccccc
Q 020238          105 LPS------SIEC--LSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREV  176 (329)
Q Consensus       105 ~~~------~~~~--l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  176 (329)
                      ++.      .+..  ...|+.|++++|.+.. +|. +..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+
T Consensus       425 L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l  501 (567)
T 1dce_A          425 LRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV  501 (567)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             hhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC
Confidence            110      0000  1134555555544322 333 444555555555554333 4444444445555555555544443


Q ss_pred             ChhhhhccccCCCCCccEEEcCCCCCCCc--chhhcCCCCccEEEcCCCcCcc
Q 020238          177 PLSIVRLNNFDGLQNLTSLYLTDCGITEL--PENLGQLSLLLELYLEKNNFER  227 (329)
Q Consensus       177 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~--~~~~~~~~~L~~L~l~~~~i~~  227 (329)
                      | .      +..+++|+.|++++|.++++  |..++.+++|+.|++++|+++.
T Consensus       502 p-~------l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~  547 (567)
T 1dce_A          502 D-G------VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ  547 (567)
T ss_dssp             G-G------GTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGG
T ss_pred             c-c------cCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCC
Confidence            3 1      23344455555555544443  4444445555555555554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.68  E-value=5.4e-16  Score=129.84  Aligned_cols=151  Identities=24%  Similarity=0.256  Sum_probs=76.0

Q ss_pred             ccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEE
Q 020238           39 TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSAL  118 (329)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L  118 (329)
                      +..+++|++|++++|.+. .++ .+..+++|++|++++|.+.. ++.+..+++|+.|++++|.+..++....  ++|++|
T Consensus        37 ~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~-~~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L  111 (263)
T 1xeu_A           37 QKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISD-LSPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRL  111 (263)
T ss_dssp             HHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEE
T ss_pred             hhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCC-ChhhccCCCCCEEECCCCccCCcCcccc--CcccEE
Confidence            445555555555555432 233 34455555555555554332 2224445555555555555554443222  555556


Q ss_pred             EcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238          119 YLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT  198 (329)
Q Consensus       119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  198 (329)
                      ++++|.+.. + ..+..+++|+.|++++|...+ ++ .+..+++|+.|++++|.+..+. .      +..+++|+.|+++
T Consensus       112 ~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~-~~-~l~~l~~L~~L~L~~N~i~~~~-~------l~~l~~L~~L~l~  180 (263)
T 1xeu_A          112 FLDNNELRD-T-DSLIHLKNLEILSIRNNKLKS-IV-MLGFLSKLEVLDLHGNEITNTG-G------LTRLKKVNWIDLT  180 (263)
T ss_dssp             ECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCB-CG-GGGGCTTCCEEECTTSCCCBCT-T------STTCCCCCEEEEE
T ss_pred             EccCCccCC-C-hhhcCcccccEEECCCCcCCC-Ch-HHccCCCCCEEECCCCcCcchH-H------hccCCCCCEEeCC
Confidence            655554332 2 235555556666665544333 22 3455556666666666555441 1      3445666666666


Q ss_pred             CCCCCCc
Q 020238          199 DCGITEL  205 (329)
Q Consensus       199 ~~~l~~~  205 (329)
                      +|.++..
T Consensus       181 ~N~~~~~  187 (263)
T 1xeu_A          181 GQKCVNE  187 (263)
T ss_dssp             EEEEECC
T ss_pred             CCcccCC
Confidence            6655543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=1.9e-15  Score=123.03  Aligned_cols=149  Identities=23%  Similarity=0.327  Sum_probs=103.4

Q ss_pred             cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238           93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA  172 (329)
Q Consensus        93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  172 (329)
                      +.++.+++.+..+|..+.  +++++|++++|.+....+..+..+++|++|++++|......|..|.++++|+.|++++|.
T Consensus        14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~   91 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK   91 (220)
T ss_dssp             TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence            355566666666665442  577777777776655555567777777777777776666666677777777777777777


Q ss_pred             ccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceeccccccc
Q 020238          173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCER  248 (329)
Q Consensus       173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~  248 (329)
                      +..++...     +.++++|+.|++++|.++++ +..+..+++|+.|++++|+++.++ ..+..+++|+.|++++|+.
T Consensus        92 l~~l~~~~-----f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           92 ITELPKSL-----FEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCCCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCccCHhH-----ccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            77776655     56677777777777777775 345667777777777777777665 3466677777777777654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=2.1e-15  Score=122.79  Aligned_cols=147  Identities=19%  Similarity=0.197  Sum_probs=69.3

Q ss_pred             EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCC-ccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238           94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLP-SSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA  172 (329)
Q Consensus        94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  172 (329)
                      .++++++.++.+|..+  .+.+++|++++|.+....+ ..+..+++|+.|++++|.+....+..|..+++|+.|++++|.
T Consensus        15 ~l~~s~n~l~~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   92 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR   92 (220)
T ss_dssp             EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EeEeCCCCcccCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence            4455555554444432  2234455555544433322 224445555555555544433333344555555555555555


Q ss_pred             ccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccC-ChhhhcCCccceecccccc
Q 020238          173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERL-PESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~-~~~l~~~~~L~~L~l~~~~  247 (329)
                      +..++...     +..+++|+.|++++|.++++ |..+..+++|+.|++++|+++.+ |..+..+++|+.|++++|+
T Consensus        93 l~~~~~~~-----~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           93 LENVQHKM-----FKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             CCCCCGGG-----GTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             cCccCHhH-----hcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            55444333     34445555555555555543 33344455555555555555533 3444455555555555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.66  E-value=9e-16  Score=134.62  Aligned_cols=173  Identities=20%  Similarity=0.209  Sum_probs=138.4

Q ss_pred             cEEeecCCCCCCCCcccCCCCCccEEEecCccccccchh-hh-cCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCC
Q 020238           70 KELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSS-IE-CLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWC  147 (329)
Q Consensus        70 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~-~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  147 (329)
                      +.++++++.+ ..+|.. -...++.|++++|.+..++.. +. .+++|++|++++|.+....+..|..+++|+.|++++|
T Consensus        21 ~~l~c~~~~l-~~iP~~-~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N   98 (361)
T 2xot_A           21 NILSCSKQQL-PNVPQS-LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN   98 (361)
T ss_dssp             TEEECCSSCC-SSCCSS-CCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             CEEEeCCCCc-CccCcc-CCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence            5788887654 345531 125689999999999977654 44 8999999999998877666677889999999999998


Q ss_pred             CCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhh----cCCCCccEEEcCCC
Q 020238          148 SSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENL----GQLSLLLELYLEKN  223 (329)
Q Consensus       148 ~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~----~~~~~L~~L~l~~~  223 (329)
                      .+....+..|..+++|+.|++++|.+..++...     +..+++|+.|++++|.++.+|..+    ..+++|+.|++++|
T Consensus        99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~-----~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N  173 (361)
T 2xot_A           99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNA-----FEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSN  173 (361)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSS
T ss_pred             cCCcCCHHHhCCCcCCCEEECCCCcccEECHHH-----hCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCC
Confidence            776655567889999999999999998776544     678899999999999999988765    56899999999999


Q ss_pred             cCccCC-hhhhcCCc--cceecccccccc
Q 020238          224 NFERLP-ESIIHLSK--LAYLKLSYCERL  249 (329)
Q Consensus       224 ~i~~~~-~~l~~~~~--L~~L~l~~~~~l  249 (329)
                      +|+.++ ..+..++.  ++.|++++|+..
T Consensus       174 ~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          174 KLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            999888 56777776  488999987754

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=2.6e-15  Score=123.12  Aligned_cols=151  Identities=19%  Similarity=0.136  Sum_probs=114.4

Q ss_pred             ceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCccEEEe
Q 020238           19 LKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYL   97 (329)
Q Consensus        19 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l   97 (329)
                      -+.++.+++. +..+|.  .+  .++|++|++++|.+....+..+..+++|++|++++|.+....+. +..+++|+.|++
T Consensus        21 ~~~v~c~~~~-l~~ip~--~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~L   95 (229)
T 3e6j_A           21 GTTVDCRSKR-HASVPA--GI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDL   95 (229)
T ss_dssp             TTEEECTTSC-CSSCCS--CC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEeEccCCC-cCccCC--CC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEEC
Confidence            4567776655 666665  22  37888888888887776677788888888898888776433333 456688889999


Q ss_pred             cCccccccchh-hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccc
Q 020238           98 NGTAIEELPSS-IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIRE  175 (329)
Q Consensus        98 ~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  175 (329)
                      ++|.+..++.. +..+++|++|++++|.+. .+|..+..+++|+.|++++|......+..+..+++|+.|++++|.+..
T Consensus        96 s~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A           96 GTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             CCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            88888877654 577889999999887754 677778888899999998876665544567888899999999888763

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.62  E-value=1.3e-15  Score=118.66  Aligned_cols=128  Identities=23%  Similarity=0.270  Sum_probs=81.2

Q ss_pred             CCCCCEEEcCCCCCc-ccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccc-cChhhhhccccCCC
Q 020238          112 LSGLSALYLDHCKRL-KSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIRE-VPLSIVRLNNFDGL  189 (329)
Q Consensus       112 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~  189 (329)
                      .++|++|++++|.+. ..+|..+..+++|++|++++|.....  ..+..+++|+.|++++|.+.. ++..      +..+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~------~~~l   94 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDML------AEKL   94 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHH------HHHC
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHH------HhhC
Confidence            355666666665544 24555555566666666666554333  455666667777777766665 3322      2336


Q ss_pred             CCccEEEcCCCCCCCcc--hhhcCCCCccEEEcCCCcCccCCh----hhhcCCccceecccccc
Q 020238          190 QNLTSLYLTDCGITELP--ENLGQLSLLLELYLEKNNFERLPE----SIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       190 ~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~i~~~~~----~l~~~~~L~~L~l~~~~  247 (329)
                      ++|+.|++++|.+++++  ..+..+++|+.|++++|.++.++.    .+..+++|+.|++++|.
T Consensus        95 ~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           95 PNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             TTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            67777777777777754  456677777777777777776664    56677777777777765

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=1.4e-17  Score=153.92  Aligned_cols=193  Identities=16%  Similarity=0.104  Sum_probs=140.9

Q ss_pred             cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCC-------------CCcccCccccCCCcccEEe-ecCCCC
Q 020238           14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCK-------------SLRILPPGIFRLEFLKELD-LWGCSK   79 (329)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~   79 (329)
                      ..+++|+.|++++|+ +..+|.  .++.|++|++|++++|.             ..+..|..+..+++|+.|+ ++.+.+
T Consensus       346 ~~~~~L~~L~Ls~n~-L~~Lp~--~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~  422 (567)
T 1dce_A          346 ATDEQLFRCELSVEK-STVLQS--ELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL  422 (567)
T ss_dssp             STTTTSSSCCCCHHH-HHHHHH--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             ccCccceeccCChhh-HHhhHH--HHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc
Confidence            457778888888776 566665  67778888888876653             3334555666677777777 443311


Q ss_pred             CCCCc-------ccCC--CCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCC
Q 020238           80 LKTLP-------EISS--AGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSL  150 (329)
Q Consensus        80 ~~~~~-------~~~~--~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~  150 (329)
                      . .++       .+..  ...|+.|++++|.++.+|. ++.+++|+.|++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus       423 ~-~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~  499 (567)
T 1dce_A          423 D-DLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE  499 (567)
T ss_dssp             H-HHHHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC
T ss_pred             c-hhhhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC
Confidence            1 111       0111  1358889999999988886 888999999999998765 77888889999999999997666


Q ss_pred             CCCCcccCCCccCcEEeccCcccccc--ChhhhhccccCCCCCccEEEcCCCCCCCcchh----hcCCCCccEEEc
Q 020238          151 KSLPNELGNLEALNSLNAEGTAIREV--PLSIVRLNNFDGLQNLTSLYLTDCGITELPEN----LGQLSLLLELYL  220 (329)
Q Consensus       151 ~~~~~~~~~l~~L~~L~l~~~~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~----~~~~~~L~~L~l  220 (329)
                      + +| .+..+++|+.|++++|.+..+  |..      +..+++|+.|++++|.++++|+.    +..+|+|+.|++
T Consensus       500 ~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~------l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          500 N-VD-GVANLPRLQELLLCNNRLQQSAAIQP------LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             C-CG-GGTTCSSCCEEECCSSCCCSSSTTGG------GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             C-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH------HhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            5 66 788899999999999998877  444      45688999999999988876543    334888888864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.60  E-value=5.7e-15  Score=115.02  Aligned_cols=135  Identities=21%  Similarity=0.232  Sum_probs=86.3

Q ss_pred             CCccEEEecCcccc--ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEe
Q 020238           90 GNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLN  167 (329)
Q Consensus        90 ~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  167 (329)
                      ++++.|++++|.+.  .+|..+..+++|++|++++|.+...  ..+..+++|++|++++|......|..+..+++|+.|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            56677777777666  6666666677777777777664333  4566667777777777666555555555566777777


Q ss_pred             ccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch----hhcCCCCccEEEcCCCcCccCCh
Q 020238          168 AEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE----NLGQLSLLLELYLEKNNFERLPE  230 (329)
Q Consensus       168 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~l~~~~i~~~~~  230 (329)
                      +++|.+..++..    ..+..+++|++|++++|.+++++.    .+..+++|+.|++++|.+.++|.
T Consensus       102 Ls~N~l~~~~~~----~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  164 (168)
T 2ell_A          102 LSGNKLKDISTL----EPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD  164 (168)
T ss_dssp             CBSSSCCSSGGG----GGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred             ccCCccCcchhH----HHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence            777766655421    014556677777777777666554    56667777777777776665553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.59  E-value=9.6e-15  Score=111.36  Aligned_cols=125  Identities=22%  Similarity=0.217  Sum_probs=93.4

Q ss_pred             CCCCCEEEcCCCCCc-ccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccc-cChhhhhccccCCC
Q 020238          112 LSGLSALYLDHCKRL-KSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIRE-VPLSIVRLNNFDGL  189 (329)
Q Consensus       112 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-~~~~~~~~~~~~~~  189 (329)
                      .+++++|++++|.+. ..+|..+..+++|++|++++|.....  ..+..+++|+.|++++|.+.. +|..      +..+
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~------~~~l   87 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVL------AEKC   87 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHH------HHHC
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHH------hhhC
Confidence            467778888887765 35666667778888888887655544  567777888888888888776 4332      2446


Q ss_pred             CCccEEEcCCCCCCCcc--hhhcCCCCccEEEcCCCcCccCCh----hhhcCCccceeccc
Q 020238          190 QNLTSLYLTDCGITELP--ENLGQLSLLLELYLEKNNFERLPE----SIIHLSKLAYLKLS  244 (329)
Q Consensus       190 ~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~i~~~~~----~l~~~~~L~~L~l~  244 (329)
                      ++|++|++++|.+++++  ..+..+++|+.|++++|+++.++.    .+..+++|+.|+++
T Consensus        88 ~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           88 PNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            78888888888888854  667888888888888888886664    57778888888875

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=3.5e-14  Score=113.07  Aligned_cols=127  Identities=23%  Similarity=0.322  Sum_probs=86.8

Q ss_pred             cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCc-cccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238           93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT  171 (329)
Q Consensus        93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  171 (329)
                      +.++++++.+..+|..+.  .++++|++++|.+....+. .+..+++|++|++++|.+.+..|..|..+++|+.|++++|
T Consensus        11 ~~l~~s~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            455556666655555432  2677777777665443332 3666777777777776666666667777777777777777


Q ss_pred             cccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCc
Q 020238          172 AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~  226 (329)
                      .+..++...     +..+++|++|++++|.++++ |..+..+++|+.|++++|.+.
T Consensus        89 ~l~~~~~~~-----~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           89 KIKEISNKM-----FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCCEECSSS-----STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cCCccCHHH-----hcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            777665543     56678888888888888874 556777888888888888776

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.56  E-value=2.1e-15  Score=143.64  Aligned_cols=161  Identities=21%  Similarity=0.186  Sum_probs=99.9

Q ss_pred             EecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccc
Q 020238           96 YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIRE  175 (329)
Q Consensus        96 ~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~  175 (329)
                      ++.++.+...+..+..++.|+.|++++|.+. .++..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+..
T Consensus       207 ~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  284 (727)
T 4b8c_D          207 DDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS  284 (727)
T ss_dssp             ---------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS
T ss_pred             cccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc
Confidence            3334444444556777788888888887754 56666667888888888886655 777778888888888888888887


Q ss_pred             cChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc-cCChhhhcCC-ccceecccccccccccC
Q 020238          176 VPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE-RLPESIIHLS-KLAYLKLSYCERLQSLP  253 (329)
Q Consensus       176 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~-~L~~L~l~~~~~l~~~~  253 (329)
                      +|..+      ..+++|+.|++++|.++.+|..++.+++|+.|+|++|.++ .+|..+.... ....+++++|.....+|
T Consensus       285 lp~~~------~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          285 LPAEL------GSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             CCSSG------GGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             cChhh------cCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            76554      4567888888888888888888888888888888888887 4445554432 22346777766544443


Q ss_pred             CCCCCccEEeccCC
Q 020238          254 KLPCNLSELDAHHC  267 (329)
Q Consensus       254 ~~~~~L~~L~l~~c  267 (329)
                         ..|+.|+++++
T Consensus       359 ---~~l~~l~l~~n  369 (727)
T 4b8c_D          359 ---HERRFIEINTD  369 (727)
T ss_dssp             ---CC---------
T ss_pred             ---cccceeEeecc
Confidence               45667777766

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.55  E-value=2.2e-14  Score=112.58  Aligned_cols=132  Identities=19%  Similarity=0.155  Sum_probs=94.1

Q ss_pred             hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCC
Q 020238          109 IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDG  188 (329)
Q Consensus       109 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  188 (329)
                      +..+.+|++|++++|.+. .++......++|+.|++++|...+.  ..+..+++|+.|++++|.+..++..+     +..
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~-----~~~   86 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGL-----DQA   86 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCH-----HHH
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcch-----hhc
Confidence            345566777777776544 3333222233777777777655443  45677778888888888887776544     345


Q ss_pred             CCCccEEEcCCCCCCCcch--hhcCCCCccEEEcCCCcCccCChh----hhcCCccceeccccccc
Q 020238          189 LQNLTSLYLTDCGITELPE--NLGQLSLLLELYLEKNNFERLPES----IIHLSKLAYLKLSYCER  248 (329)
Q Consensus       189 ~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~i~~~~~~----l~~~~~L~~L~l~~~~~  248 (329)
                      +++|+.|++++|.++++|.  .+..+++|+.|++++|.++.+|..    +..+++|+.|++++|..
T Consensus        87 l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           87 LPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            7888888888888888776  677888899999999988877764    78888888888888754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.52  E-value=3.5e-14  Score=108.19  Aligned_cols=81  Identities=19%  Similarity=0.136  Sum_probs=31.7

Q ss_pred             ccCcEEeccCCCCC-cccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccc-cchhhhcCCCCCEEEc
Q 020238           43 DKLVNLNLNNCKSL-RILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEE-LPSSIECLSGLSALYL  120 (329)
Q Consensus        43 ~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-~~~~~~~l~~L~~L~l  120 (329)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+... +.+..+++|+.|++++|.+.. +|..+..+++|++|++
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l   95 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNL   95 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEEC
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEEC
Confidence            34444444444433 23333334444444444444432222 223333334444444443332 3333333444444444


Q ss_pred             CCCC
Q 020238          121 DHCK  124 (329)
Q Consensus       121 ~~~~  124 (329)
                      ++|.
T Consensus        96 s~N~   99 (149)
T 2je0_A           96 SGNK   99 (149)
T ss_dssp             TTSC
T ss_pred             CCCc
Confidence            4433

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=5.9e-14  Score=121.45  Aligned_cols=100  Identities=11%  Similarity=0.077  Sum_probs=48.9

Q ss_pred             CCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCcc-EEEcCCCCCCCcc-hhhcCCC
Q 020238          136 LKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT-SLYLTDCGITELP-ENLGQLS  213 (329)
Q Consensus       136 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~~~-~~~~~~~  213 (329)
                      +++|+.+++.+|.....-+..|.++.+|+.+++..+ +..++...     |.++.+|+ .+++.+ .++.++ .++..|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a-----F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~  297 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRV-----FSNCGRLAGTLELPA-SVTAIEFGAFMGCD  297 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTT-----TTTCTTCCEEEEECT-TCCEECTTTTTTCT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHH-----hhCChhccEEEEEcc-cceEEchhhhhCCc
Confidence            455555555554333222234555555555555554 44444333     45555555 555555 444433 3344555


Q ss_pred             CccEEEcCCCcCccCC-hhhhcCCccceec
Q 020238          214 LLLELYLEKNNFERLP-ESIIHLSKLAYLK  242 (329)
Q Consensus       214 ~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~  242 (329)
                      +|+.++++++.++.++ .++.++++|+.++
T Consensus       298 ~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          298 NLRYVLATGDKITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             TEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred             cCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence            5555555555555444 3444555555543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.51  E-value=4.9e-15  Score=141.06  Aligned_cols=179  Identities=19%  Similarity=0.170  Sum_probs=112.1

Q ss_pred             CCccEEEecCccccccchhhhcCCCCCEEEcCCC----CCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcE
Q 020238           90 GNIEVMYLNGTAIEELPSSIECLSGLSALYLDHC----KRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNS  165 (329)
Q Consensus        90 ~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~----~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~  165 (329)
                      +.++.+.+..+.+...+..+.....|+.+.+...    +.....+..+..++.|+.|++++|... .+|..+..+++|+.
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTR  251 (727)
T ss_dssp             -------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSC
T ss_pred             CccceEEeeCCCCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCE
Confidence            4456666666666554444333333333333221    112244566888999999999997765 77877778999999


Q ss_pred             EeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccc
Q 020238          166 LNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY  245 (329)
Q Consensus       166 L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~  245 (329)
                      |++++|.+..+|..+      ..+++|+.|+|++|.++.+|..++.+++|+.|+|++|.|+.+|..+..+++|+.|+|++
T Consensus       252 L~Ls~N~l~~lp~~~------~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~  325 (727)
T 4b8c_D          252 LYLNGNSLTELPAEI------KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEG  325 (727)
T ss_dssp             CBCTTSCCSCCCGGG------GGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTT
T ss_pred             EEeeCCcCcccChhh------hCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCC
Confidence            999999999888664      56899999999999999999999999999999999999999998899999999999999


Q ss_pred             cccccccCCCCC----CccEEeccCCCCCcCCCC
Q 020238          246 CERLQSLPKLPC----NLSELDAHHCTALESSPG  275 (329)
Q Consensus       246 ~~~l~~~~~~~~----~L~~L~l~~c~~l~~~~~  275 (329)
                      |+..+.+|..+.    .+..+++++|.....+|.
T Consensus       326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            886655553331    223356777776555543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=3.5e-13  Score=107.28  Aligned_cols=125  Identities=27%  Similarity=0.349  Sum_probs=67.6

Q ss_pred             EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccc
Q 020238           94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAI  173 (329)
Q Consensus        94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  173 (329)
                      .++++++.+..+|..+  .+++++|++++|.+ +.+|..+..+++|+.|++++|.+....+..|.++++|+.|++++|.+
T Consensus        14 ~l~~~~~~l~~ip~~~--~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGI--PRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             EEECTTSCCSSCCSCC--CTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             EEEcCCCCCCcCCCCC--CCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            3444444444444332  23555555555443 23444455555555555555544444444455555666666666665


Q ss_pred             cccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCc
Q 020238          174 REVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~  226 (329)
                      ..++...     +..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus        91 ~~i~~~~-----f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRT-----FDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTT-----TTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHH-----hCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            5554433     4556666666666666666554 3555666777777766654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.49  E-value=7.6e-13  Score=103.82  Aligned_cols=127  Identities=20%  Similarity=0.303  Sum_probs=80.8

Q ss_pred             cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238           93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA  172 (329)
Q Consensus        93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  172 (329)
                      +.++++++.+..+|..+  .+++++|++++|.+....+..+..+++|++|++++|......+..+..+++|+.|++++|.
T Consensus        10 ~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~   87 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK   87 (177)
T ss_dssp             TEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence            44555555555555432  3567777777766544344445666777777777765554433445667777777777777


Q ss_pred             ccccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCc
Q 020238          173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~  226 (329)
                      ++.++...     +..+++|+.|++++|.+++++.. +..+++|+.|++++|.+.
T Consensus        88 l~~~~~~~-----~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A           88 LQSLPNGV-----FDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             CCCCCTTT-----TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccccCHHH-----hhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence            77665544     45567777777777777776654 355777777777777766

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.48  E-value=8.7e-13  Score=104.96  Aligned_cols=127  Identities=18%  Similarity=0.256  Sum_probs=94.4

Q ss_pred             cEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCC
Q 020238           70 KELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS  149 (329)
Q Consensus        70 ~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~  149 (329)
                      +.++++++.+. .+|.. -.++++.|++++|.+..+|..+..+++|++|++++|.+....+..|.++++|++|++++|.+
T Consensus        13 ~~l~~~~~~l~-~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l   90 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL   90 (193)
T ss_dssp             TEEECTTSCCS-SCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CEEEcCCCCCC-cCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence            45566654432 33321 12567777887777777777788888888888888877666666788888888888888777


Q ss_pred             CCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC
Q 020238          150 LKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT  203 (329)
Q Consensus       150 ~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~  203 (329)
                      ....+..|..+++|+.|++++|.+..++...     +..+++|+.|++++|.+.
T Consensus        91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~-----~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGA-----FNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CBCCTTTTTTCTTCCEEECCSSCCCBCCTTT-----TTTCTTCCEEECCSSCEE
T ss_pred             CEeCHHHhCCCCCCCEEECCCCCCCeeChhh-----hhcCccccEEEeCCCCee
Confidence            7666667888888888988888888777654     567888899999888665

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=7.4e-14  Score=109.53  Aligned_cols=107  Identities=14%  Similarity=0.104  Sum_probs=59.1

Q ss_pred             CCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCcc
Q 020238          114 GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT  193 (329)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~  193 (329)
                      +|++|++++|.+...  ..+..+++|++|++++|......+..+..+++|+.|++++|.+..++..    ..+..+++|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~----~~l~~l~~L~  116 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL----DPLASLKSLT  116 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGG----GGGGGCTTCC
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhh----HhhhcCCCCC
Confidence            555555555443322  3344555555555555443322112235555666666666665554430    0134566777


Q ss_pred             EEEcCCCCCCCcchh----hcCCCCccEEEcCCCcCc
Q 020238          194 SLYLTDCGITELPEN----LGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       194 ~L~l~~~~l~~~~~~----~~~~~~L~~L~l~~~~i~  226 (329)
                      .|++++|.++++|..    +..+++|+.|++++|.+.
T Consensus       117 ~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          117 YLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            777777777666553    666777777777777654

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.47  E-value=8.1e-13  Score=105.09  Aligned_cols=109  Identities=20%  Similarity=0.160  Sum_probs=68.0

Q ss_pred             CccEEEecCccccccch--hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEec
Q 020238           91 NIEVMYLNGTAIEELPS--SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA  168 (329)
Q Consensus        91 ~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  168 (329)
                      +++.|++++|.+..++.  .+..+++|++|++++|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  109 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL  109 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            45555555555554443  2566666677777666655555566666667777777766655555555666677777777


Q ss_pred             cCccccccChhhhhccccCCCCCccEEEcCCCCCCC
Q 020238          169 EGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE  204 (329)
Q Consensus       169 ~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  204 (329)
                      ++|.+..++...     +..+++|++|++++|.+..
T Consensus       110 ~~N~l~~~~~~~-----~~~l~~L~~L~L~~N~l~c  140 (192)
T 1w8a_A          110 YDNQISCVMPGS-----FEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CSSCCCEECTTS-----STTCTTCCEEECTTCCBCC
T ss_pred             CCCcCCeeCHHH-----hhcCCCCCEEEeCCCCccC
Confidence            777766554332     4556777777777776653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.46  E-value=1.6e-11  Score=108.78  Aligned_cols=255  Identities=13%  Similarity=0.094  Sum_probs=168.0

Q ss_pred             CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc--ccCCCCCc
Q 020238           15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP--EISSAGNI   92 (329)
Q Consensus        15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L   92 (329)
                      .+..++.+.+-+.  +..++.. .|.++ +|+.+.+..+ +...-..+|.+ .+|+.+.+.. . +..++  .+..+.+|
T Consensus       111 ~~~~l~~i~ip~~--i~~I~~~-aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~-l~~I~~~aF~~c~~L  182 (401)
T 4fdw_A          111 ILKGYNEIILPNS--VKSIPKD-AFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-T-LEQLKEDIFYYCYNL  182 (401)
T ss_dssp             ECSSCSEEECCTT--CCEECTT-TTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-T-CCEECSSTTTTCTTC
T ss_pred             ecCCccEEEECCc--cCEehHh-hcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-C-ccEehHHHhhCcccC
Confidence            4466666666653  3444432 55665 6888888764 33333344555 4688888886 2 22222  46667889


Q ss_pred             cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238           93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA  172 (329)
Q Consensus        93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  172 (329)
                      +.+++..+.+..++...-.+.+|+.+.+.. .....-..+|.++++|+.+++..+ ....-...|.+ .+|+.+.+. +.
T Consensus       183 ~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~  258 (401)
T 4fdw_A          183 KKADLSKTKITKLPASTFVYAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NG  258 (401)
T ss_dssp             CEEECTTSCCSEECTTTTTTCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TT
T ss_pred             CeeecCCCcceEechhhEeecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CC
Confidence            999998888887776554578899998875 344444566888889999998762 22222344655 678888884 44


Q ss_pred             ccccChhhhhccccCCCCCccEEEcCCCCCC-----Ccc-hhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccc
Q 020238          173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-----ELP-ENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSY  245 (329)
Q Consensus       173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~-~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~  245 (329)
                      +..++...     |.+|++|+.+++.++.+.     .++ ..+..|++|+.+++.. .++.+. .++.+|++|+.+.+..
T Consensus       259 i~~I~~~a-----F~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          259 VTNIASRA-----FYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             CCEECTTT-----TTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred             ccEEChhH-----hhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence            55555544     788999999999887665     343 4577899999999984 477665 5777889999999865


Q ss_pred             cccccccC----CCCCCccEEeccCCCCCcCCCCCCCCC-CCCcEEEcCC
Q 020238          246 CERLQSLP----KLPCNLSELDAHHCTALESSPGLVFPS-RDPQYFDLRN  290 (329)
Q Consensus       246 ~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~-~~L~~L~i~~  290 (329)
                      +  ++.++    ..+ +|+.+.+.++......+..+..+ ..++.|.+..
T Consensus       333 ~--l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          333 N--VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             T--CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECG
T ss_pred             c--ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCH
Confidence            4  55554    234 89999998876433333333333 2566666544

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=4.3e-13  Score=116.01  Aligned_cols=257  Identities=14%  Similarity=0.077  Sum_probs=141.6

Q ss_pred             CCCceEEEecCCCCcccCCCcccccC-cccCcEEeccCCCCC--cccCccccCCCcccEEeecCCCCCCCCcccCC----
Q 020238           16 NGKLKQIISRASNFFTKSPNHSLTLH-LDKLVNLNLNNCKSL--RILPPGIFRLEFLKELDLWGCSKLKTLPEISS----   88 (329)
Q Consensus        16 ~~~L~~L~l~~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~--~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----   88 (329)
                      +++++.|.+++.-...+..   .+.. +++|+.|+|++|.+.  ....   ..++.++.+.+..+.+..  ..+..    
T Consensus        24 ~~~l~~L~l~g~i~~~~~~---~l~~~l~~L~~LdLs~n~i~~~~~~~---~~~~~~~~~~~~~~~I~~--~aF~~~~~~   95 (329)
T 3sb4_A           24 ANSITHLTLTGKLNAEDFR---HLRDEFPSLKVLDISNAEIKMYSGKA---GTYPNGKFYIYMANFVPA--YAFSNVVNG   95 (329)
T ss_dssp             HHHCSEEEEEEEECHHHHH---HHHHSCTTCCEEEEEEEEECCEEESS---SSSGGGCCEEECTTEECT--TTTEEEETT
T ss_pred             hCceeEEEEeccccHHHHH---HHHHhhccCeEEecCcceeEEecCcc---ccccccccccccccccCH--HHhcccccc
Confidence            4567777776642111111   2222 566777777776654  1111   112223334444332111  12344    


Q ss_pred             ----CCCccEEEecCccccccch-hhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCC---CCC-CCcccCC
Q 020238           89 ----AGNIEVMYLNGTAIEELPS-SIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSS---LKS-LPNELGN  159 (329)
Q Consensus        89 ----~~~L~~L~l~~~~i~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~---~~~-~~~~~~~  159 (329)
                          +++|+.+++.. .+..++. .|..+++|+.+++..|......+..|.++.++..+.......   ... ....|..
T Consensus        96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~  174 (329)
T 3sb4_A           96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIE  174 (329)
T ss_dssp             EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEE
T ss_pred             cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccc
Confidence                67777777776 6665543 466777777777777665555555566666666555543110   011 1122333


Q ss_pred             CccCc-EEeccCccccccChhhhh---------------------ccc-cCCCCCccEEEcCCCCCCCcch-hhcCCCCc
Q 020238          160 LEALN-SLNAEGTAIREVPLSIVR---------------------LNN-FDGLQNLTSLYLTDCGITELPE-NLGQLSLL  215 (329)
Q Consensus       160 l~~L~-~L~l~~~~l~~~~~~~~~---------------------~~~-~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L  215 (329)
                      +..|+ .+.+....  .++..+..                     ... ...+++|+.+++++|.++.++. .+..|++|
T Consensus       175 ~~~L~~~i~~~~~~--~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L  252 (329)
T 3sb4_A          175 GEPLETTIQVGAMG--KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYL  252 (329)
T ss_dssp             SCCCEEEEEECTTC--CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTC
T ss_pred             ccccceeEEecCCC--cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCC
Confidence            33343 22221110  00000000                     000 1137889999999988888765 47778999


Q ss_pred             cEEEcCCCcCccCC-hhhhcCCccc-eecccccccccccC----CCCCCccEEeccCCCCCcCCC-CCCCCCCCCcEEE
Q 020238          216 LELYLEKNNFERLP-ESIIHLSKLA-YLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSP-GLVFPSRDPQYFD  287 (329)
Q Consensus       216 ~~L~l~~~~i~~~~-~~l~~~~~L~-~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~  287 (329)
                      +.+++.+| ++.++ .++.++++|+ .+++.+  .++.++    ..+++|+.++++++. ++.++ ..+..+++|+.+.
T Consensus       253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCEEE
T ss_pred             CEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhhhc
Confidence            99999887 77666 5678888898 898876  455665    345788999887766 44444 4555666777765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.43  E-value=2.5e-12  Score=100.80  Aligned_cols=129  Identities=22%  Similarity=0.299  Sum_probs=100.8

Q ss_pred             CCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCcc
Q 020238          114 GLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLT  193 (329)
Q Consensus       114 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~  193 (329)
                      ..+.+++.++.+ ..+|..+  .++++.|++++|......+..+..+++|+.|++++|.+..++...     +..+++|+
T Consensus         8 ~~~~l~~~~~~l-~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-----~~~l~~L~   79 (177)
T 2o6r_A            8 SGTEIRCNSKGL-TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV-----FDKLTKLT   79 (177)
T ss_dssp             ETTEEECCSSCC-SSCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCC
T ss_pred             CCCEEEecCCCC-ccCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH-----ccCCCccC
Confidence            356788887664 4455433  468999999997766554556788899999999999988877655     56788999


Q ss_pred             EEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCccCChh-hhcCCccceeccccccccc
Q 020238          194 SLYLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPES-IIHLSKLAYLKLSYCERLQ  250 (329)
Q Consensus       194 ~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~~~-l~~~~~L~~L~l~~~~~l~  250 (329)
                      .|++++|.+++++.. +..+++|+.|++++|+++.++.. +..+++|++|++++|+...
T Consensus        80 ~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           80 ILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             EEECCCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence            999999999987654 57789999999999999887754 5778899999999887543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=2.4e-11  Score=107.58  Aligned_cols=244  Identities=11%  Similarity=0.092  Sum_probs=169.2

Q ss_pred             chhhhh-hhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCC
Q 020238            5 NIQQLW-DSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTL   83 (329)
Q Consensus         5 ~~~~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~   83 (329)
                      +++.+. ..|..+ +|+.+.+..+  +..+... .|.++ +|+.+.+.. .+...-..+|.+|++|+.+++.++......
T Consensus       123 ~i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~-aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~  196 (401)
T 4fdw_A          123 SVKSIPKDAFRNS-QIAKVVLNEG--LKSIGDM-AFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLP  196 (401)
T ss_dssp             TCCEECTTTTTTC-CCSEEECCTT--CCEECTT-TTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEEC
T ss_pred             ccCEehHhhcccC-CccEEEeCCC--ccEECHH-hcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEec
Confidence            445553 235555 7999998865  5555543 56665 699999986 434444567888999999999986544322


Q ss_pred             cccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCcc
Q 020238           84 PEISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEA  162 (329)
Q Consensus        84 ~~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~  162 (329)
                      .......+|+.+.+..+ +..++ ..|..+++|+.+.+.. +....-..+|.+ .+|+.+.+.. .....-...|.++++
T Consensus       197 ~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~  272 (401)
T 4fdw_A          197 ASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPE  272 (401)
T ss_dssp             TTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTT
T ss_pred             hhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCC
Confidence            22223588999999854 55444 4578899999999987 333333445666 7899999954 333333467899999


Q ss_pred             CcEEeccCcccc-----ccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhhcC
Q 020238          163 LNSLNAEGTAIR-----EVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESIIHL  235 (329)
Q Consensus       163 L~~L~l~~~~l~-----~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~~~  235 (329)
                      |+.+.+.++.+.     .++...     |.+|++|+.+.+.. .++.++. ++..|++|+.+++..+ ++.+. .++.++
T Consensus       273 L~~l~l~~~~~~~~~~~~I~~~a-----F~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~  345 (401)
T 4fdw_A          273 LAEVTTYGSTFNDDPEAMIHPYC-----LEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT  345 (401)
T ss_dssp             CCEEEEESSCCCCCTTCEECTTT-----TTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS
T ss_pred             CCEEEeCCccccCCcccEECHHH-----hhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC
Confidence            999999887665     344444     78899999999984 5777654 5777999999999655 66665 567788


Q ss_pred             CccceecccccccccccC-C---CC-CCccEEeccCC
Q 020238          236 SKLAYLKLSYCERLQSLP-K---LP-CNLSELDAHHC  267 (329)
Q Consensus       236 ~~L~~L~l~~~~~l~~~~-~---~~-~~L~~L~l~~c  267 (329)
                       +|+.+++.++... .++ .   .+ ..++.|.+...
T Consensus       346 -~L~~l~l~~n~~~-~l~~~~F~~~~~~l~~l~vp~~  380 (401)
T 4fdw_A          346 -GIKEVKVEGTTPP-QVFEKVWYGFPDDITVIRVPAE  380 (401)
T ss_dssp             -CCCEEEECCSSCC-BCCCSSCCCSCTTCCEEEECGG
T ss_pred             -CCCEEEEcCCCCc-ccccccccCCCCCccEEEeCHH
Confidence             9999999987533 232 1   12 35677776553

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.32  E-value=4.6e-14  Score=112.92  Aligned_cols=131  Identities=24%  Similarity=0.272  Sum_probs=89.3

Q ss_pred             ccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhh
Q 020238          102 IEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIV  181 (329)
Q Consensus       102 i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~  181 (329)
                      +..+|..+..+++|++|++++|.+.. +| .+..+++|+.|++++|... .+|..+..+++|+.|++++|.+..++ .  
T Consensus        37 l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~--  110 (198)
T 1ds9_A           37 IEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-G--  110 (198)
T ss_dssp             CCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-H--
T ss_pred             HhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-c--
Confidence            34455567777888888887766443 55 6677777888888776544 55655556677888888888777654 2  


Q ss_pred             hccccCCCCCccEEEcCCCCCCCcch--hhcCCCCccEEEcCCCcCccC-Ch----------hhhcCCccceec
Q 020238          182 RLNNFDGLQNLTSLYLTDCGITELPE--NLGQLSLLLELYLEKNNFERL-PE----------SIIHLSKLAYLK  242 (329)
Q Consensus       182 ~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~i~~~-~~----------~l~~~~~L~~L~  242 (329)
                          +..+++|+.|++++|.+++++.  .+..+++|+.|++++|.++.. |.          .+..+++|+.|+
T Consensus       111 ----~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          111 ----IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             ----HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ----cccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence                2345778888888888877554  567788888888888877533 21          256677777776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=2.5e-14  Score=114.54  Aligned_cols=133  Identities=21%  Similarity=0.230  Sum_probs=87.2

Q ss_pred             hhcCCCCCEEEcCCCCCcccCC------ccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhh
Q 020238          109 IECLSGLSALYLDHCKRLKSLP------SSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVR  182 (329)
Q Consensus       109 ~~~l~~L~~L~l~~~~~~~~~~------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  182 (329)
                      +.....++.+++..+.+....+      ..+..+++|++|++++|.... +| .+..+++|+.|++++|.+..+|...  
T Consensus        14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~~l~~~~--   89 (198)
T 1ds9_A           14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKIENLD--   89 (198)
T ss_dssp             HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEECSCSSHH--
T ss_pred             HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcccccchh--
Confidence            3344455555555444433333      367777888888888765544 55 6667777888888888777666543  


Q ss_pred             ccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCCh--hhhcCCccceeccccccccc
Q 020238          183 LNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPE--SIIHLSKLAYLKLSYCERLQ  250 (329)
Q Consensus       183 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~--~l~~~~~L~~L~l~~~~~l~  250 (329)
                          ..+++|+.|++++|.++++| .+..+++|+.|++++|+++.++.  .+..+++|++|++++|+...
T Consensus        90 ----~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A           90 ----AVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ----HHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             ----hcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence                22467777888887777765 46667777888888777776543  56677777777777765433

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.26  E-value=6.9e-11  Score=92.24  Aligned_cols=106  Identities=22%  Similarity=0.353  Sum_probs=69.0

Q ss_pred             CEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEE
Q 020238          116 SALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSL  195 (329)
Q Consensus       116 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L  195 (329)
                      +.++++++.+ +.+|..+.  ++|++|++++|.+....|..|..+++|+.|++++|.+..++...     +..+++|+.|
T Consensus        15 ~~l~~~~n~l-~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~-----~~~l~~L~~L   86 (174)
T 2r9u_A           15 TLVNCQNIRL-ASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGV-----FDKLTQLTQL   86 (174)
T ss_dssp             SEEECCSSCC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-----TTTCTTCCEE
T ss_pred             cEEEeCCCCC-CccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhH-----hCCcchhhEE
Confidence            4555555443 34444332  56666666666555555556666777777777777777666554     4567778888


Q ss_pred             EcCCCCCCCcchh-hcCCCCccEEEcCCCcCccCC
Q 020238          196 YLTDCGITELPEN-LGQLSLLLELYLEKNNFERLP  229 (329)
Q Consensus       196 ~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~  229 (329)
                      ++++|.+++++.. +..+++|+.|++++|.+...+
T Consensus        87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             ECCCCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            8888877776654 667788888888888776444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.24  E-value=6.6e-11  Score=91.98  Aligned_cols=104  Identities=22%  Similarity=0.359  Sum_probs=64.4

Q ss_pred             CCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccE
Q 020238          115 LSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTS  194 (329)
Q Consensus       115 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~  194 (329)
                      .+.++++++.+ +.+|..+  .+++++|++++|.+.+..+..|.++++|+.|++++|.+..++...     +..+++|++
T Consensus        11 ~~~l~~s~n~l-~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~-----f~~l~~L~~   82 (170)
T 3g39_A           11 GTTVDCSGKSL-ASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGV-----FDKLTQLTQ   82 (170)
T ss_dssp             TTEEECTTSCC-SSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-----TTTCTTCCE
T ss_pred             CCEEEeCCCCc-CccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhh-----ccCCCCCCE
Confidence            34555555432 3344333  255666666665555544555666666666666666666665544     456677777


Q ss_pred             EEcCCCCCCCcch-hhcCCCCccEEEcCCCcCc
Q 020238          195 LYLTDCGITELPE-NLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       195 L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~  226 (329)
                      |++++|.+++++. .+..+++|+.|++++|.++
T Consensus        83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            7777777777655 3667777888888877765

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.24  E-value=9.9e-11  Score=91.33  Aligned_cols=106  Identities=19%  Similarity=0.313  Sum_probs=63.8

Q ss_pred             cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcc
Q 020238           93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTA  172 (329)
Q Consensus        93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  172 (329)
                      +.++++++.+..+|..+.  ++|++|++++|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++|.
T Consensus        15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~   92 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH   92 (174)
T ss_dssp             SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence            345555555555555432  566666666666554445556666666777776655444333345666777777777777


Q ss_pred             ccccChhhhhccccCCCCCccEEEcCCCCCCCc
Q 020238          173 IREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL  205 (329)
Q Consensus       173 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~  205 (329)
                      +..++...     +..+++|+.|++++|.+...
T Consensus        93 l~~l~~~~-----~~~l~~L~~L~L~~N~~~c~  120 (174)
T 2r9u_A           93 LKSIPRGA-----FDNLKSLTHIYLYNNPWDCE  120 (174)
T ss_dssp             CCCCCTTT-----TTTCTTCSEEECCSSCBCTT
T ss_pred             cceeCHHH-----hccccCCCEEEeCCCCcccc
Confidence            76666543     45567777777777766543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.22  E-value=1.3e-10  Score=90.24  Aligned_cols=106  Identities=20%  Similarity=0.278  Sum_probs=70.1

Q ss_pred             ccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238           92 IEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT  171 (329)
Q Consensus        92 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  171 (329)
                      .+.++++++.+..+|..+  .+++++|++++|.+....+..+.++++|++|++++|.+....+..|..+++|+.|++++|
T Consensus        11 ~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N   88 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN   88 (170)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence            456777777777666544  367777777776665555666667777777777776555444444667777777777777


Q ss_pred             cccccChhhhhccccCCCCCccEEEcCCCCCCC
Q 020238          172 AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE  204 (329)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  204 (329)
                      .+..++...     +..+++|+.|++++|.++.
T Consensus        89 ~l~~~~~~~-----~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           89 QLKSIPRGA-----FDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             CCCCCCTTT-----TTTCTTCCEEECCSSCBCT
T ss_pred             ccCEeCHHH-----hcCCCCCCEEEeCCCCCCC
Confidence            777666544     4566777777777776653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.10  E-value=1.2e-11  Score=108.48  Aligned_cols=59  Identities=25%  Similarity=0.292  Sum_probs=26.5

Q ss_pred             CCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc-----cCChhhhcCCccceecccccc
Q 020238          189 LQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE-----RLPESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       189 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~-----~~~~~l~~~~~L~~L~l~~~~  247 (329)
                      +++|++|++++|.+++     +...+...++|+.|++++|.|+     .+...+..+++|++|++++|+
T Consensus       182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            4445555555554443     2233344445555555555544     122233344455555555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.06  E-value=1.1e-11  Score=108.66  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=105.1

Q ss_pred             CCcccEEeecCCCCCCCC----c-ccCCC-CCccEEEecCccccc--cchhhhcCCCCCEEEcCCCCCcccCCcc----c
Q 020238           66 LEFLKELDLWGCSKLKTL----P-EISSA-GNIEVMYLNGTAIEE--LPSSIECLSGLSALYLDHCKRLKSLPSS----L  133 (329)
Q Consensus        66 l~~L~~L~l~~~~~~~~~----~-~~~~~-~~L~~L~l~~~~i~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~----~  133 (329)
                      ++.|++|++++|.+....    . .+... .+|+.|++++|.++.  +......+++|++|++++|.+.......    +
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            456788888887654321    1 11222 578888888887762  2222334567888888888765432222    2


Q ss_pred             -cCCCCCcEEeccCCCCCC----CCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC----
Q 020238          134 -CKLKSLNSIYLRWCSSLK----SLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE----  204 (329)
Q Consensus       134 -~~l~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~----  204 (329)
                       ...++|++|++++|.+..    .++..+...++|+.|++++|.+.+...... ...+...++|+.|++++|.+++    
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L-~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELL-AAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHH-HHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHH-HHHHhcCCCcCeEECCCCCCCHHHHH
Confidence             246788999998876543    233344667889999999998874321100 0114556789999999999985    


Q ss_pred             -cchhhcCCCCccEEEcCCCcCc
Q 020238          205 -LPENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       205 -~~~~~~~~~~L~~L~l~~~~i~  226 (329)
                       +...+...+.|+.|++++|.|+
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCC
T ss_pred             HHHHHHHhCCCCCEEeccCCCCC
Confidence             4445667899999999999987

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.01  E-value=2.9e-08  Score=87.75  Aligned_cols=122  Identities=12%  Similarity=0.170  Sum_probs=74.1

Q ss_pred             ccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhh
Q 020238          156 ELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESII  233 (329)
Q Consensus       156 ~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~  233 (329)
                      .|..+..|+.+.+..+. ..+....     +.++++|+.+.+. +.++.++. .+..|.+|+.+++..+ ++.+. .++.
T Consensus       260 aF~~c~~L~~i~lp~~~-~~I~~~a-----F~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~  331 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSV-VSIGTGA-----FMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFA  331 (394)
T ss_dssp             TTTTCSSCCEEECCTTC-CEECTTT-----TTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT
T ss_pred             eeeecccccEEeccccc-ceecCcc-----cccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhh
Confidence            46777888888775542 2233222     6678888888885 34666544 4667888888888654 55554 5677


Q ss_pred             cCCccceecccccccccccC----CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCC
Q 020238          234 HLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRN  290 (329)
Q Consensus       234 ~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~  290 (329)
                      +|.+|+.+.+..+  ++.++    ..+.+|+.+.+.++....   .....+..|+.+.+..
T Consensus       332 ~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          332 GCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             TCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred             CCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence            8888888888543  45554    355788888887754221   2344556677666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.97  E-value=1.5e-07  Score=83.23  Aligned_cols=267  Identities=9%  Similarity=0.107  Sum_probs=150.9

Q ss_pred             ccCCC-CceEEEecCCCCcccCCCcccccCcccCcEEeccCCC--CCccc-CccccCCCcccEEeecCCCCCCCCcccCC
Q 020238           13 VQHNG-KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCK--SLRIL-PPGIFRLEFLKELDLWGCSKLKTLPEISS   88 (329)
Q Consensus        13 ~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~   88 (329)
                      |..|. .|+.+.+-..  ++.+... +|.+|.+|+.+.+..+.  .++.+ ..+|..+.+|+.+.+..+-..-....+..
T Consensus        59 F~~~~~~L~sI~iP~s--vt~Ig~~-AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~~~~I~~~aF~~  135 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPDT--VTEIGSN-AFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDSVTEIDSEAFHH  135 (394)
T ss_dssp             TTTCCSCCCEEEECTT--CCEECTT-TTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTTCSEECTTTTTT
T ss_pred             ccCCCCcCEEEEECCC--eeEEhHH-HhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCccceehhhhhhh
Confidence            45554 4888888653  4444442 67888888888887642  23333 34566677777777665311111123445


Q ss_pred             CCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEec
Q 020238           89 AGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNA  168 (329)
Q Consensus        89 ~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l  168 (329)
                      +.+|+.+.+......--...+..+..|+.+.+..+ ....-..+|. ...|+.+.+... ....-...|..+..+.....
T Consensus       136 c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~-~~~i~~~af~~c~~l~~~~~  212 (394)
T 4gt6_A          136 CEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAK-VTRIGTNAFSECFALSTITS  212 (394)
T ss_dssp             CTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTT-CCEECTTTTTTCTTCCEEEE
T ss_pred             hcccccccccceeeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCc-ccccccchhhhccccceecc
Confidence            57777777754322222334556677777776552 2222222232 345666655431 11111122333333333322


Q ss_pred             cCcccc-----------------------------ccChhhhhc--cccCCCCCccEEEcCCCCCCCc-chhhcCCCCcc
Q 020238          169 EGTAIR-----------------------------EVPLSIVRL--NNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLL  216 (329)
Q Consensus       169 ~~~~l~-----------------------------~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~  216 (329)
                      ......                             .+|..+..+  ..|.++..|+.+.+.... ..+ ...+..++.|+
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~  291 (394)
T 4gt6_A          213 DSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQ  291 (394)
T ss_dssp             CCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCC
T ss_pred             cccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccc
Confidence            211100                             122222111  126778889999887643 333 34577899999


Q ss_pred             EEEcCCCcCccCC-hhhhcCCccceecccccccccccC----CCCCCccEEeccCCCCCcCCCC-CCCCCCCCcEEEcCC
Q 020238          217 ELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSPG-LVFPSRDPQYFDLRN  290 (329)
Q Consensus       217 ~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~i~~  290 (329)
                      .+.+. +.++.++ .++.+|.+|+.+.+..+  ++.++    ..+.+|+.+.+...  ++.+.. ++..|.+|+.+++.+
T Consensus       292 ~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          292 DIEFS-SRITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             EEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCEEEESS
T ss_pred             cccCC-CcccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCEEEECC
Confidence            99986 4566666 56788999999999753  55555    34578999999643  555554 445678999999987


Q ss_pred             C
Q 020238          291 N  291 (329)
Q Consensus       291 ~  291 (329)
                      .
T Consensus       367 ~  367 (394)
T 4gt6_A          367 S  367 (394)
T ss_dssp             C
T ss_pred             c
Confidence            5

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=4.1e-09  Score=91.62  Aligned_cols=104  Identities=17%  Similarity=0.179  Sum_probs=71.8

Q ss_pred             EEEecCc-cccccchhhhcCCCCCEEEcCC-CCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238           94 VMYLNGT-AIEELPSSIECLSGLSALYLDH-CKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT  171 (329)
Q Consensus        94 ~L~l~~~-~i~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  171 (329)
                      .++.+++ .+..+|. +..+++|++|++++ |.+....+..|.++++|+.|++++|.+.+..|..|.++++|+.|++++|
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence            4566666 6777777 77777788888875 6655444556777778888888877666655666777777777777777


Q ss_pred             cccccChhhhhccccCCCCCccEEEcCCCCCCC
Q 020238          172 AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE  204 (329)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~  204 (329)
                      .+..+|...     +..++ |+.|++.+|.+..
T Consensus        91 ~l~~~~~~~-----~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           91 ALESLSWKT-----VQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CCSCCCSTT-----TCSCC-CCEEECCSSCCCC
T ss_pred             ccceeCHHH-----cccCC-ceEEEeeCCCccC
Confidence            777766554     33333 7777777776663

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.94  E-value=3.7e-09  Score=91.88  Aligned_cols=104  Identities=16%  Similarity=0.189  Sum_probs=82.2

Q ss_pred             EEeecCCCCCCCCcccCCCCCccEEEecC-ccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCC
Q 020238           71 ELDLWGCSKLKTLPEISSAGNIEVMYLNG-TAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCS  148 (329)
Q Consensus        71 ~L~l~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~  148 (329)
                      .++.++++.+..+|.+..+.+|+.|++++ |.+..++ ..+..+++|++|++++|.+....+..|.++++|+.|++++|.
T Consensus        12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred             EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence            45777753455677766678999999996 9999776 568899999999999998777777788999999999999977


Q ss_pred             CCCCCCcccCCCccCcEEeccCccccc
Q 020238          149 SLKSLPNELGNLEALNSLNAEGTAIRE  175 (329)
Q Consensus       149 ~~~~~~~~~~~l~~L~~L~l~~~~l~~  175 (329)
                      +...-+..+..+. |+.|++.+|.+..
T Consensus        92 l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           92 LESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             CSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             cceeCHHHcccCC-ceEEEeeCCCccC
Confidence            6654444455554 9999999998874

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.93  E-value=6.9e-08  Score=85.37  Aligned_cols=213  Identities=15%  Similarity=0.077  Sum_probs=114.1

Q ss_pred             cccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCE
Q 020238           38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSA  117 (329)
Q Consensus        38 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~  117 (329)
                      .+.+|.+|+.+.+.++ ....-..+|.++.+|+.+++..+-..-.-..+..+..|+.+.+..+.. .+.........|+.
T Consensus       157 aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~  234 (394)
T 4fs7_A          157 AFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKN  234 (394)
T ss_dssp             TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCE
T ss_pred             hhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCce-EeehhhcccCCCce
Confidence            5777888888887653 222333456667778877776541111111334445566555543322 12223334456777


Q ss_pred             EEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEc
Q 020238          118 LYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYL  197 (329)
Q Consensus       118 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  197 (329)
                      +.+.. .........+..+..++.+.+..+ ........|..+..++.+......+.   ...     +..+.+|+.+.+
T Consensus       235 i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i~---~~~-----F~~~~~L~~i~l  304 (394)
T 4fs7_A          235 IIIPD-SFTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIVP---EKT-----FYGCSSLTEVKL  304 (394)
T ss_dssp             EEECT-TCCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEEC---TTT-----TTTCTTCCEEEE
T ss_pred             EEECC-CceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceeec---ccc-----cccccccccccc
Confidence            66654 222222344556677777776542 22222344566666666655443322   111     455667777776


Q ss_pred             CCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccccccccC----CCCCCccEEeccC
Q 020238          198 TDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHH  266 (329)
Q Consensus       198 ~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~  266 (329)
                      ..+ ++.+.. ++..|.+|+.+++..+ ++.+. .++.+|.+|+.+.+..+  ++.++    ..+.+|+.+.+..
T Consensus       305 ~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~lp~  375 (394)
T 4fs7_A          305 LDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQGCINLKKVELPK  375 (394)
T ss_dssp             CTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTCCEEEEEG
T ss_pred             ccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhCCCCCCEEEECC
Confidence            543 444432 4556777777777533 55444 45666777777777543  44444    2345666666654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.82  E-value=6e-07  Score=79.30  Aligned_cols=265  Identities=13%  Similarity=-0.003  Sum_probs=133.5

Q ss_pred             hccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCC
Q 020238           12 SVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGN   91 (329)
Q Consensus        12 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~   91 (329)
                      .|..|.+|+.+.+..+  +..+... +|.+|.+|+.+++..+ ....-..+|.++..|+.+.+..+-..-....+.... 
T Consensus        66 AF~~c~~L~~i~lp~~--i~~I~~~-aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~-  140 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPST--VREIGEF-AFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCD-  140 (394)
T ss_dssp             TTTTCTTEEEEECCTT--CCEECTT-TTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCC-
T ss_pred             HhhCCCCceEEEeCCC--ccCcchh-HhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeeccc-
Confidence            3667888888888643  4555443 6778888888888653 222223456667777776665431110111122221 


Q ss_pred             ccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238           92 IEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT  171 (329)
Q Consensus        92 L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  171 (329)
                      +....+.......-...|..+.+|+.+.+..+ ........|.++.+|+.+.+..+ ....-...|..+..|+.+.+..+
T Consensus       141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~  218 (394)
T 4fs7_A          141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNS  218 (394)
T ss_dssp             CSEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTT
T ss_pred             ccccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCC
Confidence            12221111111111234566677777776542 22223344566666666666542 11111233445555554444332


Q ss_pred             ccc--------------ccChhhhhc--cccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcC
Q 020238          172 AIR--------------EVPLSIVRL--NNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHL  235 (329)
Q Consensus       172 ~l~--------------~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~  235 (329)
                      ...              .+|.....+  ..+..+..++.+.+..+...--...+..+..++.+......+.  ...+..+
T Consensus       219 ~~~i~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~i~--~~~F~~~  296 (394)
T 4fs7_A          219 LYYLGDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVIVP--EKTFYGC  296 (394)
T ss_dssp             CCEECTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSEEC--TTTTTTC
T ss_pred             ceEeehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceeeccccccccccceeccCceeec--ccccccc
Confidence            111              001100000  0144566666666655422212234555666666666544322  1356678


Q ss_pred             CccceecccccccccccC----CCCCCccEEeccCCCCCcCCCC-CCCCCCCCcEEEcC
Q 020238          236 SKLAYLKLSYCERLQSLP----KLPCNLSELDAHHCTALESSPG-LVFPSRDPQYFDLR  289 (329)
Q Consensus       236 ~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~i~  289 (329)
                      .+|+.+.+..+  ++.++    ..+.+|+.+.+.+.  ++.++. ++..|.+|+.+++.
T Consensus       297 ~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          297 SSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             TTCCEEEECTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCC
T ss_pred             ccccccccccc--cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEEC
Confidence            88888888643  45554    34578999888643  555543 44456778887774

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.81  E-value=6.3e-09  Score=90.53  Aligned_cols=38  Identities=16%  Similarity=0.287  Sum_probs=19.4

Q ss_pred             CCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc
Q 020238          189 LQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       189 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~  226 (329)
                      +++|++|+++.|.+++     ++..+..+++|+.|++++|.|+
T Consensus       278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4555666665555554     2222233455666666555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.74  E-value=3.5e-09  Score=81.50  Aligned_cols=86  Identities=12%  Similarity=0.128  Sum_probs=53.3

Q ss_pred             CccEEEcCCCcCc-cCChhhhcCCccceecccccccccccC-----CC---CCCccEEeccCCCCCcCCC-CCCCCCCCC
Q 020238          214 LLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQSLP-----KL---PCNLSELDAHHCTALESSP-GLVFPSRDP  283 (329)
Q Consensus       214 ~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~-----~~---~~~L~~L~l~~c~~l~~~~-~~~~~~~~L  283 (329)
                      .|+.|++++|.|+ .-...+..+++|++|+|++|..+++-.     ..   .++|++|++++|+.+++-. ..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            4666666666655 222344566666666666666554422     21   2367777777777665421 223456889


Q ss_pred             cEEEcCCCcccchhHH
Q 020238          284 QYFDLRNNLKLDRNEI  299 (329)
Q Consensus       284 ~~L~i~~~~~l~~~~~  299 (329)
                      ++|++++|+++++...
T Consensus       142 ~~L~L~~c~~Itd~gl  157 (176)
T 3e4g_A          142 KYLFLSDLPGVKEKEK  157 (176)
T ss_dssp             CEEEEESCTTCCCHHH
T ss_pred             CEEECCCCCCCCchHH
Confidence            9999999999988754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.73  E-value=1.6e-06  Score=76.10  Aligned_cols=81  Identities=15%  Similarity=0.233  Sum_probs=44.4

Q ss_pred             cCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhhc
Q 020238          157 LGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESIIH  234 (329)
Q Consensus       157 ~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~~  234 (329)
                      +..+..|+.+.+..+ +..+....     +.++.+|+.+.+..+ +..++. .+..|++|+.+.+.++.++.+. .++.+
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~a-----F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~  308 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFL-----LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMD  308 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTT-----TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTT
T ss_pred             ccCCccceEEEcCCC-ccEeCccc-----cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcC
Confidence            445555555555433 33332222     455666666666432 444332 3555677777777666666554 45666


Q ss_pred             CCccceeccc
Q 020238          235 LSKLAYLKLS  244 (329)
Q Consensus       235 ~~~L~~L~l~  244 (329)
                      |.+|+.+.+.
T Consensus       309 c~~L~~i~lp  318 (379)
T 4h09_A          309 CVKLSSVTLP  318 (379)
T ss_dssp             CTTCCEEECC
T ss_pred             CCCCCEEEcC
Confidence            6777777664

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.69  E-value=1.1e-08  Score=89.12  Aligned_cols=202  Identities=12%  Similarity=0.148  Sum_probs=124.1

Q ss_pred             CCCceEEEecCCCCcc-cCC------CcccccCcccCcEEeccCCCCC---------cccCccccCCCcccEEeecCCCC
Q 020238           16 NGKLKQIISRASNFFT-KSP------NHSLTLHLDKLVNLNLNNCKSL---------RILPPGIFRLEFLKELDLWGCSK   79 (329)
Q Consensus        16 ~~~L~~L~l~~~~~~~-~~~------~~~~~~~~~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~   79 (329)
                      ...++.|.+.... .. ...      ...+...+++|+.|.+.+....         ..+...+..+|+|++|+++++..
T Consensus       106 ~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~  184 (362)
T 2ra8_A          106 LPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNN  184 (362)
T ss_dssp             GGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBT
T ss_pred             chhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCC
Confidence            3457788887654 22 111      0113567889999998764321         12334456689999999998732


Q ss_pred             CCCCcccCCCCCccEEEecCcccc-ccchhhh--cCCCCCEEEcCCC--CC-----cccCCccc--cCCCCCcEEeccCC
Q 020238           80 LKTLPEISSAGNIEVMYLNGTAIE-ELPSSIE--CLSGLSALYLDHC--KR-----LKSLPSSL--CKLKSLNSIYLRWC  147 (329)
Q Consensus        80 ~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~--~l~~L~~L~l~~~--~~-----~~~~~~~~--~~l~~L~~L~l~~~  147 (329)
                      . .++.+ ..++|+.|.+..+.+. .....+.  .+|+|++|+++.+  ..     ...+...+  ..+++|+.|++.+|
T Consensus       185 l-~l~~~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          185 L-SIGKK-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             C-BCCSC-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             c-eeccc-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence            2 33333 3689999999988876 2222333  6899999998632  11     11122222  24789999999987


Q ss_pred             CCCCCCCccc---CCCccCcEEeccCccccccCh-hhhhccccCCCCCccEEEcCCCCCCC-cchhhcC-CCCccEEEcC
Q 020238          148 SSLKSLPNEL---GNLEALNSLNAEGTAIREVPL-SIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQ-LSLLLELYLE  221 (329)
Q Consensus       148 ~~~~~~~~~~---~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~-~~~L~~L~l~  221 (329)
                      ......+..+   ..+++|+.|+++.|.+..... .+.  ..+..+++|+.|++++|.+++ ....+.. +  ...++++
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~--~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~  338 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLL--DHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVS  338 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHH--TTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECC
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHH--hhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEec
Confidence            7654322221   356899999999998875321 111  112457899999999998886 2222222 2  3567777


Q ss_pred             CCc
Q 020238          222 KNN  224 (329)
Q Consensus       222 ~~~  224 (329)
                      .++
T Consensus       339 ~~~  341 (362)
T 2ra8_A          339 DSQ  341 (362)
T ss_dssp             SBC
T ss_pred             CCc
Confidence            665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.52  E-value=4.5e-08  Score=75.31  Aligned_cols=81  Identities=15%  Similarity=0.124  Sum_probs=36.1

Q ss_pred             CccEEEcCCCCCCC-cchhhcCCCCccEEEcCCC-cCc-cCChhhhc----CCccceecccccccccccC----CCCCCc
Q 020238          191 NLTSLYLTDCGITE-LPENLGQLSLLLELYLEKN-NFE-RLPESIIH----LSKLAYLKLSYCERLQSLP----KLPCNL  259 (329)
Q Consensus       191 ~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~-~i~-~~~~~l~~----~~~L~~L~l~~~~~l~~~~----~~~~~L  259 (329)
                      .|++||+++|.+++ -...+..+++|+.|++++| .|+ .--..+..    +++|++|++++|..+++-.    ..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            34555555554443 1122344555555555555 243 11122332    1345555555555443321    123555


Q ss_pred             cEEeccCCCCCc
Q 020238          260 SELDAHHCTALE  271 (329)
Q Consensus       260 ~~L~l~~c~~l~  271 (329)
                      ++|++++|+.++
T Consensus       142 ~~L~L~~c~~It  153 (176)
T 3e4g_A          142 KYLFLSDLPGVK  153 (176)
T ss_dssp             CEEEEESCTTCC
T ss_pred             CEEECCCCCCCC
Confidence            555555555544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.43  E-value=1.1e-07  Score=74.68  Aligned_cols=58  Identities=19%  Similarity=0.224  Sum_probs=27.5

Q ss_pred             CCCccEEEcCCCCCCC-----cchhhcCCCCccEEEc--CCCcCc-----cCChhhhcCCccceeccccc
Q 020238          189 LQNLTSLYLTDCGITE-----LPENLGQLSLLLELYL--EKNNFE-----RLPESIIHLSKLAYLKLSYC  246 (329)
Q Consensus       189 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l--~~~~i~-----~~~~~l~~~~~L~~L~l~~~  246 (329)
                      .++|++|++++|.+++     +...+...+.|++|++  ++|.|+     .+.+.+...+.|++|++++|
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            3445555555555553     2333444455555555  445554     12233444445555555544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.39  E-value=2.8e-05  Score=68.08  Aligned_cols=128  Identities=16%  Similarity=0.159  Sum_probs=90.6

Q ss_pred             hhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCC
Q 020238          109 IECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDG  188 (329)
Q Consensus       109 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~  188 (329)
                      +..+.+++.+.+.. .........+.++..|+.+.+..+ ....-...|..+.+|+.+.+..+ +..++...     |.+
T Consensus       213 f~~~~~l~~i~~~~-~~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~a-----F~~  284 (379)
T 4h09_A          213 FSYGKNLKKITITS-GVTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLL-----CSG  284 (379)
T ss_dssp             TTTCSSCSEEECCT-TCCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTT-----TTT
T ss_pred             cccccccceeeecc-ceeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccc-----ccc
Confidence            44556677766654 223333445677888988888652 22222346788889999988653 55555444     788


Q ss_pred             CCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccc
Q 020238          189 LQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSY  245 (329)
Q Consensus       189 ~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~  245 (329)
                      |.+|+.+.+.++.++.++. ++..|.+|+.+.+..+ ++.+. .++.+|++|+.+.+..
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            9999999999988888754 6778999999999754 66665 5788899999998854

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=1e-07  Score=74.88  Aligned_cols=59  Identities=12%  Similarity=0.144  Sum_probs=27.7

Q ss_pred             CCccEEEecCcccc-----ccchhhhcCCCCCEEEc--CCCCCccc----CCccccCCCCCcEEeccCCC
Q 020238           90 GNIEVMYLNGTAIE-----ELPSSIECLSGLSALYL--DHCKRLKS----LPSSLCKLKSLNSIYLRWCS  148 (329)
Q Consensus        90 ~~L~~L~l~~~~i~-----~~~~~~~~l~~L~~L~l--~~~~~~~~----~~~~~~~l~~L~~L~l~~~~  148 (329)
                      ++|++|++++|.+.     .+...+...+.|++|++  ++|.+...    +...+...++|++|++++|.
T Consensus        93 ~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A           93 NTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             SSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             CCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            34444444444444     12334444555666666  44444322    22233344556666665543

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.94  E-value=1.1e-05  Score=66.75  Aligned_cols=64  Identities=20%  Similarity=0.174  Sum_probs=43.7

Q ss_pred             CCCCccEEEcCCCCCCCcc---hhhcCCCCccEEEcCCCcCccCChhhhcCC--ccceeccccccccccc
Q 020238          188 GLQNLTSLYLTDCGITELP---ENLGQLSLLLELYLEKNNFERLPESIIHLS--KLAYLKLSYCERLQSL  252 (329)
Q Consensus       188 ~~~~L~~L~l~~~~l~~~~---~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~--~L~~L~l~~~~~l~~~  252 (329)
                      .+++|+.|++++|.+++++   ..+..+++|+.|+|++|+|+.+. .+..+.  +|++|++++|+.-..+
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~  236 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTF  236 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGC
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCcccc
Confidence            4678888888888777643   45567888888888888887552 233333  7777777777654433

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.81  E-value=3.1e-05  Score=64.00  Aligned_cols=81  Identities=22%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCC--CccEEEcCCCcCc-cCC------
Q 020238          159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLS--LLLELYLEKNNFE-RLP------  229 (329)
Q Consensus       159 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~~i~-~~~------  229 (329)
                      ++++|+.|++++|.+..++.....   +..+++|+.|+|++|.++++. .+..+.  .|+.|++++|.+. .+|      
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~---~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~  243 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSI---VQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYI  243 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTH---HHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhH---HhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHH
Confidence            466788888888877765421100   245788888888888888762 233333  8888899888886 344      


Q ss_pred             -hhhhcCCccceecc
Q 020238          230 -ESIIHLSKLAYLKL  243 (329)
Q Consensus       230 -~~l~~~~~L~~L~l  243 (329)
                       ..+..+|+|+.||=
T Consensus       244 ~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          244 SAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHCTTCCEESS
T ss_pred             HHHHHHCcccCeECC
Confidence             23566778877763

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.14  E-value=0.00034  Score=54.72  Aligned_cols=14  Identities=21%  Similarity=0.159  Sum_probs=6.0

Q ss_pred             CCccEEEcCCCCCC
Q 020238          190 QNLTSLYLTDCGIT  203 (329)
Q Consensus       190 ~~L~~L~l~~~~l~  203 (329)
                      +.|++|+|++|.++
T Consensus        98 ~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           98 PSLRVLNVESNFLT  111 (197)
T ss_dssp             SSCCEEECCSSBCC
T ss_pred             CccCeEecCCCcCC
Confidence            33444444444444

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.11  E-value=0.00028  Score=55.18  Aligned_cols=39  Identities=21%  Similarity=0.256  Sum_probs=20.4

Q ss_pred             CCCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc
Q 020238          188 GLQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       188 ~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~  226 (329)
                      ..+.|+.|+|++|.+.+     +...+..-+.|+.|+|++|.|+
T Consensus        68 ~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           68 NSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34455555555555553     3333444555556666555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.46  E-value=0.0057  Score=44.44  Aligned_cols=54  Identities=24%  Similarity=0.333  Sum_probs=33.7

Q ss_pred             EEeccCcccc--ccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEcCCCcCc
Q 020238          165 SLNAEGTAIR--EVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       165 ~L~l~~~~l~--~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~  226 (329)
                      .++.++++++  .+|..+        .++++.|+|++|.++.++.. +..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--------p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--------PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--------CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--------CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666666  665433        34577777777777776543 455667777777776654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.29  E-value=0.0081  Score=43.63  Aligned_cols=52  Identities=27%  Similarity=0.210  Sum_probs=24.7

Q ss_pred             EEEcCCCCCC--CcchhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceecccccc
Q 020238          194 SLYLTDCGIT--ELPENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       194 ~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~  247 (329)
                      .++-+++.++  .+|..  -.++|+.|+|++|+|+.++ ..+..+++|+.|+|++|+
T Consensus        12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            3444444444  44432  1234555555555555554 233445555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	329
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-04

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 52.3 bits (124), Expect = 3e-08
 Identities = 41/205 (20%), Positives = 75/205 (36%), Gaps = 17/205 (8%)

Query: 41  HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGT 100
            L  L +L   N +   I P GI     L EL L G  +LK +  ++S  N+  + L   
Sbjct: 195 KLTNLESLIATNNQISDITPLGILT--NLDELSLNGN-QLKDIGTLASLTNLTDLDLANN 251

Query: 101 AIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNL 160
            I  L   +  L+ L+ L L   +     P +     +   +            + + NL
Sbjct: 252 QISNLAP-LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLED----ISPISNL 306

Query: 161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYL 220
           + L  L      I ++            L  L  L+  +  ++++   L  L+ +  L  
Sbjct: 307 KNLTYLTLYFNNISDIS-------PVSSLTKLQRLFFANNKVSDVSS-LANLTNINWLSA 358

Query: 221 EKNNFERLPESIIHLSKLAYLKLSY 245
             N    L   + +L+++  L L+ 
Sbjct: 359 GHNQISDLTP-LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 35/194 (18%), Positives = 81/194 (41%), Gaps = 17/194 (8%)

Query: 75  WGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLC 134
              +++  +  +    N++ + LNG  ++++ + +  L+ L+ L L + +     P  L 
Sbjct: 204 ATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQISNLAP--LS 260

Query: 135 KLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTS 194
            L  L  + L           ++ N+  L  L A  T +      +  ++    L+NLT 
Sbjct: 261 GLTKLTELKLGAN--------QISNISPLAGLTAL-TNLELNENQLEDISPISNLKNLTY 311

Query: 195 LYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPK 254
           L L    I+++   +  L+ L  L+   N    +  S+ +L+ + +L   +  ++  L  
Sbjct: 312 LTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHN-QISDLTP 368

Query: 255 LPC--NLSELDAHH 266
           L     +++L  + 
Sbjct: 369 LANLTRITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.002
 Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 2/104 (1%)

Query: 189 LQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCER 248
           L  +T+L     GI  + + +  L+ L ++    N    +   + +L+KL  + ++  + 
Sbjct: 43  LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQI 100

Query: 249 LQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNL 292
               P                +     L   +   +     N +
Sbjct: 101 ADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI 144

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.1 bits (100), Expect = 2e-05
 Identities = 36/220 (16%), Positives = 74/220 (33%), Gaps = 10/220 (4%)

Query: 45  LVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIE 103
              L+L N K   I       L+ L  L L      K  P   +    +E +YL+   ++
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK 92

Query: 104 ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEAL 163
           ELP  +        ++ +   +++    +      +  +      S          ++ L
Sbjct: 93  ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKL 152

Query: 164 NSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEK 222
           + +    T I  +P  +          +LT L+L    IT+    +L  L+ L +L L  
Sbjct: 153 SYIRIADTNITTIPQGL--------PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSF 204

Query: 223 NNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSEL 262
           N+   +    +  +           +L  +P    +   +
Sbjct: 205 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI 244

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.7 bits (99), Expect = 3e-05
 Identities = 44/275 (16%), Positives = 81/275 (29%), Gaps = 28/275 (10%)

Query: 21  QIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL 80
            ++   +N  T+  +     +L  L  L L N K  +I P     L  L+ L L    +L
Sbjct: 34  ALLDLQNNKITEIKDGDFK-NLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QL 91

Query: 81  KTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDH--CKRLKSLPSSLCKLKS 138
           K LPE       E+        +   S    L+ +  + L     K       +   +K 
Sbjct: 92  KELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKK 151

Query: 139 LNSIYLRWCSSLKSLPNELGNLEALN-SLNAEGTAIREVPLSIVRLNNFDG--------- 188
           L+ I +   +          +L  L+   N            +  L              
Sbjct: 152 LSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 211

Query: 189 ------LQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPES-------IIHL 235
                   +L  L+L +  + ++P  L     +  +YL  NN   +  +           
Sbjct: 212 NGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKK 271

Query: 236 SKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTAL 270
           +  + + L     +Q     P     +       L
Sbjct: 272 ASYSGVSLFSN-PVQYWEIQPSTFRCVYVRAAVQL 305

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 12/96 (12%)

Query: 143 YLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGI 202
                +S   + +      +L  LN     + E+P              L  L  +   +
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELP---------ALPPRLERLIASFNHL 316

Query: 203 TELPENLGQLSLLLELYLEKNNFERLPESIIHLSKL 238
            E+PE    L    +L++E N     P+    +  L
Sbjct: 317 AEVPELPQNLK---QLHVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 16/77 (20%), Positives = 22/77 (28%), Gaps = 3/77 (3%)

Query: 191 NLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQ 250
               L L + G++ LPE    L     L    N+   LPE    L  L     +      
Sbjct: 39  QAHELELNNLGLSSLPELPPHLE---SLVASCNSLTELPELPQSLKSLLVDNNNLKALSD 95

Query: 251 SLPKLPCNLSELDAHHC 267
             P L       +    
Sbjct: 96  LPPLLEYLGVSNNQLEK 112

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 37.5 bits (85), Expect = 0.001
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 4/57 (7%)

Query: 211 QLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHC 267
               L EL +  N    LP       +L  L  S+   L  +P+LP NL +L   + 
Sbjct: 282 LPPSLEELNVSNNKLIELPALP---PRLERLIASFN-HLAEVPELPQNLKQLHVEYN 334

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 7e-04
 Identities = 32/236 (13%), Positives = 66/236 (27%), Gaps = 7/236 (2%)

Query: 45  LVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEE 104
              L+L+           +     L +L+L      K   + +      +   +      
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 105 LPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALN 164
                   +           RL SLP    +            + LK+LP  L       
Sbjct: 93  PLLGQTLPALTV--LDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 165 SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNN 224
              +          + +     +GL+NL +L L +  +  +P+      LL   +L  N 
Sbjct: 151 EKLSLANNNL----TELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNP 206

Query: 225 FERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPS 280
           +      I++  +            +    +    S + +  C   +  P   +P 
Sbjct: 207 W-LCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTSNVASVQCDNSDKFPVYKYPG 261

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	329
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.91
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.91
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.88
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.84
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.78
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.76
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.68
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.64
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.48
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.46
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.4
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.21
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.15
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.13
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.19
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.94
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.77
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.31

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.92  E-value=3.1e-25  Score=189.25  Aligned_cols=247  Identities=18%  Similarity=0.213  Sum_probs=194.4

Q ss_pred             CceEEEecCCCCcc--cCCCcccccCcccCcEEeccC-CCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCcc
Q 020238           18 KLKQIISRASNFFT--KSPNHSLTLHLDKLVNLNLNN-CKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIE   93 (329)
Q Consensus        18 ~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~   93 (329)
                      +++.|+++++....  .+|.  .++++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..+. +.....|+
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~--~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEECCCCCCCCCCCCCh--HHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhc
Confidence            68999999886333  2444  788999999999987 556667898899999999999999887665553 55568899


Q ss_pred             EEEecCcccc-ccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCC-cEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238           94 VMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSL-NSIYLRWCSSLKSLPNELGNLEALNSLNAEGT  171 (329)
Q Consensus        94 ~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  171 (329)
                      .++++.|.+. .+|..+..++.++++++++|.+...+|..+..+..+ +.+++++|...+..+..+..+.. ..+++..+
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~  207 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRN  207 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSS
T ss_pred             ccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            9999988766 667888899999999999988877888887777765 78888887777777776666544 36777777


Q ss_pred             cccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc-cCChhhhcCCccceeccccccccc
Q 020238          172 AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYCERLQ  250 (329)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~~~l~  250 (329)
                      .........     +..+++++.+++.++.+...+..+..+++|+.|++++|+++ .+|+.+.++++|++|++++|...+
T Consensus       208 ~~~~~~~~~-----~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g  282 (313)
T d1ogqa_         208 MLEGDASVL-----FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG  282 (313)
T ss_dssp             EEEECCGGG-----CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE
T ss_pred             ccccccccc-----ccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccc
Confidence            665433333     46678999999999988876667888999999999999998 889999999999999999987666


Q ss_pred             ccCCC--CCCccEEeccCCCCCcC
Q 020238          251 SLPKL--PCNLSELDAHHCTALES  272 (329)
Q Consensus       251 ~~~~~--~~~L~~L~l~~c~~l~~  272 (329)
                      .+|+.  +.+|+.+++++|+.+..
T Consensus       283 ~iP~~~~L~~L~~l~l~~N~~l~g  306 (313)
T d1ogqa_         283 EIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             ECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             cCCCcccCCCCCHHHhCCCccccC
Confidence            77753  46788888888876653

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.91  E-value=1.2e-22  Score=177.82  Aligned_cols=167  Identities=21%  Similarity=0.241  Sum_probs=80.9

Q ss_pred             hcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCC
Q 020238          110 ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGL  189 (329)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  189 (329)
                      ..+++++.+++++|......+  ....++|+.+++++|.... + ..+..+++|+.++++++.+..++.       +..+
T Consensus       194 ~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~~-------~~~~  262 (384)
T d2omza2         194 AKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLAP-------LSGL  262 (384)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCGG-------GTTC
T ss_pred             ccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCCc-------cccc
Confidence            344555566665554332211  2334555555555543322 1 234445555555555555444321       2334


Q ss_pred             CCccEEEcCCCCCCCcch---------------------hhcCCCCccEEEcCCCcCccCChhhhcCCccceeccccccc
Q 020238          190 QNLTSLYLTDCGITELPE---------------------NLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCER  248 (329)
Q Consensus       190 ~~L~~L~l~~~~l~~~~~---------------------~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~  248 (329)
                      ++|+.|+++++.+++++.                     .+..+++++.|++++|+++.++ .+..+++|++|++++|. 
T Consensus       263 ~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~-~l~~l~~L~~L~L~~n~-  340 (384)
T d2omza2         263 TKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQRLFFANNK-  340 (384)
T ss_dssp             TTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCG-GGGGCTTCCEEECCSSC-
T ss_pred             ccCCEeeccCcccCCCCccccccccccccccccccccccccchhcccCeEECCCCCCCCCc-ccccCCCCCEEECCCCC-
Confidence            455555555554444321                     2444555666666666555543 24556666666666553 


Q ss_pred             ccccC--CCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCC
Q 020238          249 LQSLP--KLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNN  291 (329)
Q Consensus       249 l~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~  291 (329)
                      ++.++  ..+++|++|++++|. ++.+++ +..+++|+.|+++++
T Consensus       341 l~~l~~l~~l~~L~~L~l~~N~-l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         341 VSDVSSLANLTNINWLSAGHNQ-ISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSC-CCBCGG-GTTCTTCSEEECCCE
T ss_pred             CCCChhHcCCCCCCEEECCCCc-CCCChh-hccCCCCCEeeCCCC
Confidence            33333  223556666665554 333322 344455666666553

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.91  E-value=2.1e-24  Score=184.08  Aligned_cols=242  Identities=19%  Similarity=0.195  Sum_probs=204.4

Q ss_pred             CCCchh---hhhhhccCCCCceEEEecCC-CCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCC
Q 020238            2 PHGNIQ---QLWDSVQHNGKLKQIISRAS-NFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGC   77 (329)
Q Consensus         2 ~~~~~~---~l~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   77 (329)
                      ++++++   .+|..+..+++|++|+++++ +..+.+|.  .+.++++|++|++++|.+.+..+..+..+..|+.+++++|
T Consensus        58 ~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~--~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N  135 (313)
T d1ogqa_          58 SGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPP--AIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN  135 (313)
T ss_dssp             ECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCG--GGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS
T ss_pred             CCCCCCCCCCCChHHhcCcccccccccccccccccccc--ccccccccchhhhccccccccccccccchhhhcccccccc
Confidence            345555   47889999999999999985 43446776  7999999999999999988888888889999999999999


Q ss_pred             CCCCCCc-ccCCCCCccEEEecCcccc-ccchhhhcCCCC-CEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC
Q 020238           78 SKLKTLP-EISSAGNIEVMYLNGTAIE-ELPSSIECLSGL-SALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP  154 (329)
Q Consensus        78 ~~~~~~~-~~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L-~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~  154 (329)
                      .....+| .+..++.++.+++++|.+. .+|..+..+..+ +.+.+.+|.+....+..+..+..+ .+++.++......|
T Consensus       136 ~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~~~~~~  214 (313)
T d1ogqa_         136 ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNMLEGDAS  214 (313)
T ss_dssp             EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEEEECCG
T ss_pred             cccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccc
Confidence            8777766 5677799999999999987 778888888776 889999988877777777766544 78998888877888


Q ss_pred             cccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCC-CcchhhcCCCCccEEEcCCCcCc-cCChhh
Q 020238          155 NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGIT-ELPENLGQLSLLLELYLEKNNFE-RLPESI  232 (329)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l  232 (329)
                      ..+..+++++.++++++.+...+..      +..+++|+.|++++|+++ .+|..++.+++|+.|++++|+++ .+|+ +
T Consensus       215 ~~~~~~~~l~~l~~~~~~l~~~~~~------~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~  287 (313)
T d1ogqa_         215 VLFGSDKNTQKIHLAKNSLAFDLGK------VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-G  287 (313)
T ss_dssp             GGCCTTSCCSEEECCSSEECCBGGG------CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-S
T ss_pred             ccccccccccccccccccccccccc------cccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-c
Confidence            8888999999999999988754433      466899999999999999 49999999999999999999998 7884 5


Q ss_pred             hcCCccceecccccccccccC
Q 020238          233 IHLSKLAYLKLSYCERLQSLP  253 (329)
Q Consensus       233 ~~~~~L~~L~l~~~~~l~~~~  253 (329)
                      +++++|+.+++++|+.+...|
T Consensus       288 ~~L~~L~~l~l~~N~~l~g~p  308 (313)
T d1ogqa_         288 GNLQRFDVSAYANNKCLCGSP  308 (313)
T ss_dssp             TTGGGSCGGGTCSSSEEESTT
T ss_pred             ccCCCCCHHHhCCCccccCCC
Confidence            788999999999998776654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=5.9e-22  Score=168.06  Aligned_cols=263  Identities=17%  Similarity=0.174  Sum_probs=200.2

Q ss_pred             CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCC
Q 020238            3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKT   82 (329)
Q Consensus         3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~   82 (329)
                      +.+++++|..+.  +++++|++++|+ ++.++.. .+.++++|++|++++|.+....|..+..++.|++|++++|.+. .
T Consensus        19 ~~~L~~lP~~l~--~~l~~L~Ls~N~-i~~l~~~-~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~-~   93 (305)
T d1xkua_          19 DLGLEKVPKDLP--PDTALLDLQNNK-ITEIKDG-DFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-E   93 (305)
T ss_dssp             TSCCCSCCCSCC--TTCCEEECCSSC-CCCBCTT-TTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-B
T ss_pred             CCCCCccCCCCC--CCCCEEECcCCc-CCCcChh-HhhccccccccccccccccccchhhhhCCCccCEecccCCccC-c
Confidence            446888887664  689999999987 7777753 6888999999999999988777788889999999999998654 3


Q ss_pred             CcccCCCCCccEEEecCccccccchh-hhcCCCCCEEEcCCCCCcc--cCCccccCCCCCcEEeccCCCCCCCCCcccCC
Q 020238           83 LPEISSAGNIEVMYLNGTAIEELPSS-IECLSGLSALYLDHCKRLK--SLPSSLCKLKSLNSIYLRWCSSLKSLPNELGN  159 (329)
Q Consensus        83 ~~~~~~~~~L~~L~l~~~~i~~~~~~-~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~  159 (329)
                      ++. .....++.+.+..+.+..++.. +.....++.+....+....  ..+..+..+++|+.+++.+|... .++..  .
T Consensus        94 l~~-~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~  169 (305)
T d1xkua_          94 LPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQG--L  169 (305)
T ss_dssp             CCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSS--C
T ss_pred             Ccc-chhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCcc--c
Confidence            443 2236788999999888866543 5567788888887765432  33456778899999999987654 34443  3


Q ss_pred             CccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCc-chhhcCCCCccEEEcCCCcCccCChhhhcCCcc
Q 020238          160 LEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITEL-PENLGQLSLLLELYLEKNNFERLPESIIHLSKL  238 (329)
Q Consensus       160 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L  238 (329)
                      .++++.|+++++.....+...     +..++.++.|++++|.++++ +..+..+++|+.|++++|+++++|.++..+++|
T Consensus       170 ~~~L~~L~l~~n~~~~~~~~~-----~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L  244 (305)
T d1xkua_         170 PPSLTELHLDGNKITKVDAAS-----LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYI  244 (305)
T ss_dssp             CTTCSEEECTTSCCCEECTGG-----GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSC
T ss_pred             CCccCEEECCCCcCCCCChhH-----hhccccccccccccccccccccccccccccceeeecccccccccccccccccCC
Confidence            578999999998877655443     57788999999999999986 446778999999999999999999889999999


Q ss_pred             ceecccccccccccCC----------CCCCccEEeccCCCC-CcCCCCCCCCC
Q 020238          239 AYLKLSYCERLQSLPK----------LPCNLSELDAHHCTA-LESSPGLVFPS  280 (329)
Q Consensus       239 ~~L~l~~~~~l~~~~~----------~~~~L~~L~l~~c~~-l~~~~~~~~~~  280 (329)
                      ++|++++|. ++.++.          ..++|+.|++++|+. ...+++..+++
T Consensus       245 ~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~  296 (305)
T d1xkua_         245 QVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC  296 (305)
T ss_dssp             CEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred             CEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhcc
Confidence            999999974 666542          236788888888874 23455544444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=7.9e-22  Score=165.51  Aligned_cols=200  Identities=24%  Similarity=0.317  Sum_probs=105.6

Q ss_pred             cCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcc-cCCCCCccEEEec-Ccccccc-chhhhcCCCCCEEEc
Q 020238           44 KLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPE-ISSAGNIEVMYLN-GTAIEEL-PSSIECLSGLSALYL  120 (329)
Q Consensus        44 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~~~L~~L~l~-~~~i~~~-~~~~~~l~~L~~L~l  120 (329)
                      .+++|+|++|.+.+.-+..+.++++|++|+++++.+....+. +.....++.+... .+.+..+ +..+..+++|++|++
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l  112 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL  112 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence            455555555544332233455555555555555443322221 1222444444443 3333333 334555666666666


Q ss_pred             CCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCC
Q 020238          121 DHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDC  200 (329)
Q Consensus       121 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~  200 (329)
                      .+|......+..+....+|+.+++++|...+..+..|..+++|+.|++++|.+..++...     +.++++|+.+++++|
T Consensus       113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~-----f~~l~~L~~l~l~~N  187 (284)
T d1ozna_         113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-----FRGLHSLDRLLLHQN  187 (284)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSS
T ss_pred             CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh-----hccccccchhhhhhc
Confidence            665543333344445556666666665444333344555666666666666666555443     455666666666666


Q ss_pred             CCCCc-chhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceeccccccc
Q 020238          201 GITEL-PENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCER  248 (329)
Q Consensus       201 ~l~~~-~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~  248 (329)
                      .++++ |..+..+++|+.|++++|++..++ ..+..+++|+.|++++|+.
T Consensus       188 ~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l  237 (284)
T d1ozna_         188 RVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPW  237 (284)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCE
T ss_pred             cccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCC
Confidence            66653 445556666666666666666444 4555666666666666543

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.88  E-value=4e-21  Score=167.90  Aligned_cols=252  Identities=20%  Similarity=0.278  Sum_probs=181.2

Q ss_pred             CCCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCC
Q 020238            1 MPHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKL   80 (329)
Q Consensus         1 l~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~   80 (329)
                      +++++|+++ +++..+++|++|++++|+ +++.+   .++++++|++|++++|.+... + .+..+++|+.|+++++...
T Consensus        51 l~~~~I~~l-~gl~~L~nL~~L~Ls~N~-l~~l~---~l~~L~~L~~L~L~~n~i~~i-~-~l~~l~~L~~L~~~~~~~~  123 (384)
T d2omza2          51 ADRLGIKSI-DGVEYLNNLTQINFSNNQ-LTDIT---PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQIT  123 (384)
T ss_dssp             CCSSCCCCC-TTGGGCTTCCEEECCSSC-CCCCG---GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCCCCc-cccccCCCCCEEeCcCCc-CCCCc---cccCCcccccccccccccccc-c-ccccccccccccccccccc
Confidence            466778887 678889999999999987 66665   478899999999999886543 2 3678888888888765432


Q ss_pred             CC----------------------------------------------------------------CcccCCCCCccEEE
Q 020238           81 KT----------------------------------------------------------------LPEISSAGNIEVMY   96 (329)
Q Consensus        81 ~~----------------------------------------------------------------~~~~~~~~~L~~L~   96 (329)
                      ..                                                                ......+++++.++
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  203 (384)
T d2omza2         124 DIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI  203 (384)
T ss_dssp             CCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceee
Confidence            10                                                                01122236677778


Q ss_pred             ecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccccc
Q 020238           97 LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREV  176 (329)
Q Consensus        97 l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~  176 (329)
                      ++++.+..+++ ...+++|+.|++.+|.+.. + ..+..+++|+.+++++|...+. + .+..+++|+.++++++.+..+
T Consensus       204 l~~n~i~~~~~-~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~-~-~~~~~~~L~~L~l~~~~l~~~  278 (384)
T d2omza2         204 ATNNQISDITP-LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNL-A-PLSGLTKLTELKLGANQISNI  278 (384)
T ss_dssp             CCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC
T ss_pred             ccCCccCCCCc-ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCC-C-cccccccCCEeeccCcccCCC
Confidence            88777775543 4556778888887766433 3 2456677777777777654432 2 356667777777777665543


Q ss_pred             Chh---------------hhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCcccee
Q 020238          177 PLS---------------IVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYL  241 (329)
Q Consensus       177 ~~~---------------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L  241 (329)
                      +..               +..+..+..+++++.|++++|.+++++. +..+++|++|++++|+++.++ .+..+++|++|
T Consensus       279 ~~~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L  356 (384)
T d2omza2         279 SPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSDVS-SLANLTNINWL  356 (384)
T ss_dssp             GGGTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEE
T ss_pred             CccccccccccccccccccccccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCCCh-hHcCCCCCCEE
Confidence            221               1111225667899999999999999764 788999999999999999876 68999999999


Q ss_pred             cccccccccccC--CCCCCccEEeccCC
Q 020238          242 KLSYCERLQSLP--KLPCNLSELDAHHC  267 (329)
Q Consensus       242 ~l~~~~~l~~~~--~~~~~L~~L~l~~c  267 (329)
                      ++++|. +++++  ..+++|+.|++++|
T Consensus       357 ~l~~N~-l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         357 SAGHNQ-ISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             ECCSSC-CCBCGGGTTCTTCSEEECCCE
T ss_pred             ECCCCc-CCCChhhccCCCCCEeeCCCC
Confidence            999975 55555  55689999999986

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.3e-20  Score=159.70  Aligned_cols=258  Identities=20%  Similarity=0.159  Sum_probs=201.1

Q ss_pred             CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEE
Q 020238           18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMY   96 (329)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~   96 (329)
                      ..+.++-++.. ++.+|.  .+  .+++++|++++|.+...-+..|.++++|++|++++|.+....+ .+..+++|+.++
T Consensus        11 ~~~~~~C~~~~-L~~lP~--~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~   85 (305)
T d1xkua_          11 HLRVVQCSDLG-LEKVPK--DL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY   85 (305)
T ss_dssp             ETTEEECTTSC-CCSCCC--SC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred             cCCEEEecCCC-CCccCC--CC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEec
Confidence            45566555543 777775  33  3689999999987655444578899999999999998776545 466779999999


Q ss_pred             ecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCC--CCCcccCCCccCcEEeccCcccc
Q 020238           97 LNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLK--SLPNELGNLEALNSLNAEGTAIR  174 (329)
Q Consensus        97 l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~l~  174 (329)
                      +++|.++.+|..+  .+.++.|.+..|.+....+..+.....+..++...+....  ..+..+..+++|+.++++++.+.
T Consensus        86 l~~n~l~~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~  163 (305)
T d1xkua_          86 LSKNQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT  163 (305)
T ss_dssp             CCSSCCSBCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred             ccCCccCcCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc
Confidence            9999999887643  5689999999987655444556677788888887754332  33456778899999999999988


Q ss_pred             ccChhhhhccccCCCCCccEEEcCCCCCCC-cchhhcCCCCccEEEcCCCcCccCC-hhhhcCCccceeccccccccccc
Q 020238          175 EVPLSIVRLNNFDGLQNLTSLYLTDCGITE-LPENLGQLSLLLELYLEKNNFERLP-ESIIHLSKLAYLKLSYCERLQSL  252 (329)
Q Consensus       175 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~i~~~~-~~l~~~~~L~~L~l~~~~~l~~~  252 (329)
                      .++..        .+++|+.|++++|..+. .+..+..++.++.|++++|.++.++ ..+..+++|++|++++| .++.+
T Consensus       164 ~l~~~--------~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N-~L~~l  234 (305)
T d1xkua_         164 TIPQG--------LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLVKV  234 (305)
T ss_dssp             SCCSS--------CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCSSC
T ss_pred             ccCcc--------cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeecccc-ccccc
Confidence            77643        36899999999998887 4567888999999999999999664 67889999999999998 46677


Q ss_pred             CC---CCCCccEEeccCCCCCcCCCCCC-------CCCCCCcEEEcCCCc
Q 020238          253 PK---LPCNLSELDAHHCTALESSPGLV-------FPSRDPQYFDLRNNL  292 (329)
Q Consensus       253 ~~---~~~~L~~L~l~~c~~l~~~~~~~-------~~~~~L~~L~i~~~~  292 (329)
                      |.   .+++|+.|++++|. ++.++...       .....|+.|++++++
T Consensus       235 p~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~  283 (305)
T d1xkua_         235 PGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP  283 (305)
T ss_dssp             CTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred             ccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCCCc
Confidence            74   35799999999986 66665433       235689999999987

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=5.3e-21  Score=158.82  Aligned_cols=201  Identities=18%  Similarity=0.203  Sum_probs=147.7

Q ss_pred             CCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccE
Q 020238           15 HNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEV   94 (329)
Q Consensus        15 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~   94 (329)
                      ....+.+++.+++. ++.+|.  .+  -+++++|+|++|.+...-+..|..+++|++|++++|.+ ..++.+..+++|++
T Consensus         8 ~~~~~~~v~C~~~~-L~~iP~--~l--p~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-~~l~~~~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRN-LTALPP--DL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-TKLQVDGTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSC-CSSCCS--CC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-CEEECCSCCTTCCE
T ss_pred             ccCCCeEEEccCCC-CCeeCc--Cc--CcCCCEEECcCCcCCCcCHHHhhccccccccccccccc-cccccccccccccc
Confidence            33445556666554 666664  23  25788999999876655456678888999999998764 45666666788888


Q ss_pred             EEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCcccc
Q 020238           95 MYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIR  174 (329)
Q Consensus        95 L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~  174 (329)
                      |++++|.+...+..+..+++|+.|+++++......+..+..+.+++.|++.+|......+..+..++.++.+++++|.++
T Consensus        82 L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~  161 (266)
T d1p9ag_          82 LDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (266)
T ss_dssp             EECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             cccccccccccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence            88888888877777788888888888887766555566677788888888886665544455667778888888888887


Q ss_pred             ccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc
Q 020238          175 EVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       175 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~  226 (329)
                      .++...     +..+++|++|++++|.++.+|..+..++.|+.|++++|.+.
T Consensus       162 ~~~~~~-----~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         162 ELPAGL-----LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CCCTTT-----TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred             ccCccc-----cccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCC
Confidence            776554     56677888888888888888777777888888888887664

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=3.4e-20  Score=153.84  Aligned_cols=198  Identities=21%  Similarity=0.235  Sum_probs=162.4

Q ss_pred             CcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc-ccCCCCCccEEEecCccccccchhhhcCCCCCEEE
Q 020238           41 HLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP-EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALY  119 (329)
Q Consensus        41 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~  119 (329)
                      +...+.+++.+++. ++.+|..+.  +++++|++++|.+....+ .+..+++|++|++++|.++.++. ++.+++|++|+
T Consensus         8 ~~~~~~~v~C~~~~-L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~   83 (266)
T d1p9ag_           8 KVASHLEVNCDKRN-LTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLD   83 (266)
T ss_dssp             CSTTCCEEECTTSC-CSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEE
T ss_pred             ccCCCeEEEccCCC-CCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccccc-ccccccccccc
Confidence            44556667877755 445776553  579999999987654333 46778999999999999987764 56799999999


Q ss_pred             cCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCC
Q 020238          120 LDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTD  199 (329)
Q Consensus       120 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  199 (329)
                      +++|.+ ...+..+.++++|+.|+++++......+..+..+.+++.+++++|.+..++...     +..+++++.+++++
T Consensus        84 Ls~N~l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~-----~~~l~~l~~l~l~~  157 (266)
T d1p9ag_          84 LSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGL-----LTPTPKLEKLSLAN  157 (266)
T ss_dssp             CCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT-----TTTCTTCCEEECTT
T ss_pred             cccccc-cccccccccccccccccccccccceeeccccccccccccccccccccceecccc-----ccccccchhccccc
Confidence            999875 445667788999999999998777666677788899999999999999887766     56789999999999


Q ss_pred             CCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCccceeccccccc
Q 020238          200 CGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCER  248 (329)
Q Consensus       200 ~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~  248 (329)
                      |++++++. .+..+++|++|+|++|+|+.+|+.+..+++|+.|+|++|+.
T Consensus       158 N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         158 NNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCB
T ss_pred             ccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCC
Confidence            99999765 46779999999999999999998888999999999998764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.7e-19  Score=151.06  Aligned_cols=216  Identities=21%  Similarity=0.279  Sum_probs=174.7

Q ss_pred             CCCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCC
Q 020238            2 PHGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         2 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      ++.+++++|..+.  +++++|+|++|+ ++.++.. .+.++++|++|+++++.+....+..+..+..++.++...+....
T Consensus        19 ~~~~L~~iP~~ip--~~~~~L~Ls~N~-i~~i~~~-~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~   94 (284)
T d1ozna_          19 PQQGLQAVPVGIP--AASQRIFLHGNR-ISHVPAA-SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR   94 (284)
T ss_dssp             CSSCCSSCCTTCC--TTCSEEECTTSC-CCEECTT-TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC
T ss_pred             CCCCCCccCCCCC--CCCCEEECcCCc-CCCCCHH-Hhhccccccccccccccccccccccccccccccccccccccccc
Confidence            4566888886654  578999999987 6776653 68899999999999988777666777778889998887666555


Q ss_pred             CCc--ccCCCCCccEEEecCccccccc-hhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccC
Q 020238           82 TLP--EISSAGNIEVMYLNGTAIEELP-SSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELG  158 (329)
Q Consensus        82 ~~~--~~~~~~~L~~L~l~~~~i~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~  158 (329)
                      .++  .+..+++|+.|+++.+.+..++ ..+...++|+.+++.+|.+....+..+..+++|+.|++++|......+..|.
T Consensus        95 ~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~  174 (284)
T d1ozna_          95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR  174 (284)
T ss_dssp             CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT
T ss_pred             cccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhc
Confidence            544  4566689999999999887554 4566788999999999887665566788889999999999877666667788


Q ss_pred             CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc-hhhcCCCCccEEEcCCCcCc
Q 020238          159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP-ENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       159 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~i~  226 (329)
                      ++++|+.+++++|.+..+++..     |..+++|++|++++|.+.+++ ..+..+++|+.|++++|.+.
T Consensus       175 ~l~~L~~l~l~~N~l~~i~~~~-----f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVHPHA-----FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTT-----TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             cccccchhhhhhccccccChhH-----hhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            9999999999999988776554     678899999999999999865 46778999999999999876

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.78  E-value=4.1e-17  Score=140.26  Aligned_cols=250  Identities=22%  Similarity=0.203  Sum_probs=136.4

Q ss_pred             CceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEe
Q 020238           18 KLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYL   97 (329)
Q Consensus        18 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l   97 (329)
                      ++++|+++++. ++.+|.     ..++|++|++++|.+. .+|..   ..+|++|++.+|.+. .++.+.  +.|++|++
T Consensus        39 ~l~~LdLs~~~-L~~lp~-----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~lp--~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLG-LSSLPE-----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDLP--PLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSC-CSCCCS-----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSCC--TTCCEEEC
T ss_pred             CCCEEEeCCCC-CCCCCC-----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhhc--cccccccc
Confidence            45666666554 444443     1345666666655433 34433   235556666654332 222211  34566666


Q ss_pred             cCccccccchhhhcCCCCCEEEcCCCCCcccC------------------CccccCCCCCcEEeccCCCCCCC-------
Q 020238           98 NGTAIEELPSSIECLSGLSALYLDHCKRLKSL------------------PSSLCKLKSLNSIYLRWCSSLKS-------  152 (329)
Q Consensus        98 ~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~------------------~~~~~~l~~L~~L~l~~~~~~~~-------  152 (329)
                      ++|.+..+|. ++.+++|++|++.++......                  ...+..++.++.+++.++.....       
T Consensus       106 ~~n~l~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~  184 (353)
T d1jl5a_         106 SNNQLEKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSL  184 (353)
T ss_dssp             CSSCCSSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTC
T ss_pred             cccccccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccccccccccc
Confidence            6666555543 345556666666554332110                  11233345556666555432110       


Q ss_pred             -----------CCcccCCCccCcEEeccCccccccChhhhhccc-----------cCCCCCccEEEcCCCCCCCc-----
Q 020238          153 -----------LPNELGNLEALNSLNAEGTAIREVPLSIVRLNN-----------FDGLQNLTSLYLTDCGITEL-----  205 (329)
Q Consensus       153 -----------~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~-----------~~~~~~L~~L~l~~~~l~~~-----  205 (329)
                                 ....+..++.++.++++++....++.....+..           ....+.+...++..+.+..+     
T Consensus       185 ~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~  264 (353)
T d1jl5a_         185 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPP  264 (353)
T ss_dssp             CEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                       011234556677777776655443321110000           11123344444444332221     


Q ss_pred             ------------chhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccccccccccCCCCCCccEEeccCCCCCcCC
Q 020238          206 ------------PENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESS  273 (329)
Q Consensus       206 ------------~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~  273 (329)
                                  ......+++|++|++++|+++.+|.   .+++|+.|++++|. ++++|+.+++|++|++++|+ ++.+
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~---~~~~L~~L~L~~N~-L~~l~~~~~~L~~L~L~~N~-L~~l  339 (353)
T d1jl5a_         265 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA---LPPRLERLIASFNH-LAEVPELPQNLKQLHVEYNP-LREF  339 (353)
T ss_dssp             TCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSSC
T ss_pred             hhcccccccCccccccccCCCCCEEECCCCccCcccc---ccCCCCEEECCCCc-CCccccccCCCCEEECcCCc-CCCC
Confidence                        1112336789999999999999884   46789999999875 77899888899999999998 7888


Q ss_pred             CCCCCCCCCCcEEEcC
Q 020238          274 PGLVFPSRDPQYFDLR  289 (329)
Q Consensus       274 ~~~~~~~~~L~~L~i~  289 (329)
                      |...   ..|+.|.+.
T Consensus       340 p~~~---~~L~~L~~~  352 (353)
T d1jl5a_         340 PDIP---ESVEDLRMN  352 (353)
T ss_dssp             CCCC---TTCCEEECC
T ss_pred             Cccc---cccCeeECc
Confidence            7642   347777653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.78  E-value=7.5e-18  Score=136.18  Aligned_cols=191  Identities=21%  Similarity=0.303  Sum_probs=123.4

Q ss_pred             cccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCE
Q 020238           38 LTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSA  117 (329)
Q Consensus        38 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~  117 (329)
                      ....+.+|++|++.+|.+.. + .++..+++|++|++++|.+. ....+..+++++.++++++.++.++ .+..+++|+.
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~-~~~~l~~l~~l~~l~~~~n~~~~i~-~l~~l~~L~~  111 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQIT-DLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKT  111 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCE
T ss_pred             CHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceee-ccccccccccccccccccccccccc-cccccccccc
Confidence            45667778888888876443 4 34677888888888876544 3444666677777777777766554 3566777777


Q ss_pred             EEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEc
Q 020238          118 LYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYL  197 (329)
Q Consensus       118 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l  197 (329)
                      +.++++.....  ..+...+.+..+.++++.....  ..+...++|+.|+++++.+...+.       ++.+++|+.|++
T Consensus       112 l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~-------l~~l~~L~~L~L  180 (227)
T d1h6ua2         112 LDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP-------LANLSKLTTLKA  180 (227)
T ss_dssp             EECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCCGG-------GTTCTTCCEEEC
T ss_pred             ccccccccccc--chhccccchhhhhchhhhhchh--hhhccccccccccccccccccchh-------hcccccceeccc
Confidence            77777654322  2344566677777766544332  234556677777777776654322       355677777777


Q ss_pred             CCCCCCCcchhhcCCCCccEEEcCCCcCccCChhhhcCCccceecccc
Q 020238          198 TDCGITELPENLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSY  245 (329)
Q Consensus       198 ~~~~l~~~~~~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~  245 (329)
                      ++|.+++++. +..+++|+.|++++|+++.++ .+.++++|+.|++++
T Consensus       181 s~n~l~~l~~-l~~l~~L~~L~Ls~N~lt~i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         181 DDNKISDISP-LASLPNLIEVHLKNNQISDVS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             CSSCCCCCGG-GGGCTTCCEEECTTSCCCBCG-GGTTCTTCCEEEEEE
T ss_pred             CCCccCCChh-hcCCCCCCEEECcCCcCCCCc-ccccCCCCCEEEeeC
Confidence            7777776643 566777777777777777665 356677777777653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.76  E-value=1.2e-17  Score=134.99  Aligned_cols=189  Identities=23%  Similarity=0.304  Sum_probs=153.7

Q ss_pred             cCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCcc
Q 020238           14 QHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIE   93 (329)
Q Consensus        14 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~   93 (329)
                      ..+.+|+.|++.+|. ++..+   .+..+++|++|++++|.+....  .+..+++++.+++++|.. ..++.+..+++|+
T Consensus        38 ~~l~~L~~L~l~~~~-i~~l~---~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~  110 (227)
T d1h6ua2          38 ADLDGITTLSAFGTG-VTTIE---GVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL-KNVSAIAGLQSIK  110 (227)
T ss_dssp             HHHHTCCEEECTTSC-CCCCT---TGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCC-SCCGGGTTCTTCC
T ss_pred             HHcCCcCEEECCCCC-CCcch---hHhcCCCCcEeecCCceeeccc--cccccccccccccccccc-ccccccccccccc
Confidence            567899999999997 66654   4789999999999999866533  378899999999999765 4677788889999


Q ss_pred             EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccc
Q 020238           94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAI  173 (329)
Q Consensus        94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  173 (329)
                      .+.++++....++ .+...+.++.+.++.+.....  ..+..+++|+.|++.+|.....  ..+.++++|+.|++++|.+
T Consensus       111 ~l~l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         111 TLDLTSTQITDVT-PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKI  185 (227)
T ss_dssp             EEECTTSCCCCCG-GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccc-hhccccchhhhhchhhhhchh--hhhccccccccccccccccccc--hhhcccccceecccCCCcc
Confidence            9999988776543 356788999999988765432  2366789999999998765543  3478899999999999998


Q ss_pred             cccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCC
Q 020238          174 REVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEK  222 (329)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~  222 (329)
                      ..++.       ++.+++|++|++++|++++++. +..+++|+.|++++
T Consensus       186 ~~l~~-------l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         186 SDISP-------LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCCGG-------GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEE
T ss_pred             CCChh-------hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEeeC
Confidence            87653       4668999999999999999874 88999999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=3.2e-16  Score=134.62  Aligned_cols=237  Identities=24%  Similarity=0.243  Sum_probs=158.4

Q ss_pred             ccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCC
Q 020238           43 DKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDH  122 (329)
Q Consensus        43 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~  122 (329)
                      .++++|+++++.. +.+|..   .++|++|++++|.+. .+|..  ..+|+.|++.++.+..++..   .+.|++|++++
T Consensus        38 ~~l~~LdLs~~~L-~~lp~~---~~~L~~L~Ls~N~l~-~lp~~--~~~L~~L~l~~n~l~~l~~l---p~~L~~L~L~~  107 (353)
T d1jl5a_          38 RQAHELELNNLGL-SSLPEL---PPHLESLVASCNSLT-ELPEL--PQSLKSLLVDNNNLKALSDL---PPLLEYLGVSN  107 (353)
T ss_dssp             HTCSEEECTTSCC-SCCCSC---CTTCSEEECCSSCCS-SCCCC--CTTCCEEECCSSCCSCCCSC---CTTCCEEECCS
T ss_pred             cCCCEEEeCCCCC-CCCCCC---CCCCCEEECCCCCCc-ccccc--hhhhhhhhhhhcccchhhhh---ccccccccccc
Confidence            4799999999874 457753   468999999987654 55643  36899999999998866542   24799999999


Q ss_pred             CCCcccCCccccCCCCCcEEeccCCCCCCC------------------CCcccCCCccCcEEeccCccccccChhh----
Q 020238          123 CKRLKSLPSSLCKLKSLNSIYLRWCSSLKS------------------LPNELGNLEALNSLNAEGTAIREVPLSI----  180 (329)
Q Consensus       123 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~------------------~~~~~~~l~~L~~L~l~~~~l~~~~~~~----  180 (329)
                      |.+ ..+|. +..+++|+.+++.++.....                  ....+..++.++.+.+.++.....+...    
T Consensus       108 n~l-~~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~~~~~~~~~~  185 (353)
T d1jl5a_         108 NQL-EKLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLE  185 (353)
T ss_dssp             SCC-SSCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCC
T ss_pred             ccc-ccccc-hhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccccccccccccc
Confidence            875 45554 56789999999988654321                  1123455677788888776654332111    


Q ss_pred             ---------hhccccCCCCCccEEEcCCCCCCCcchhhc-----------------CCCCccEEEcCCCcCc---cCCh-
Q 020238          181 ---------VRLNNFDGLQNLTSLYLTDCGITELPENLG-----------------QLSLLLELYLEKNNFE---RLPE-  230 (329)
Q Consensus       181 ---------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-----------------~~~~L~~L~l~~~~i~---~~~~-  230 (329)
                               .....+..++.++.+++++|....++....                 ..+.+...++..+.+.   .++. 
T Consensus       186 ~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~  265 (353)
T d1jl5a_         186 SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPN  265 (353)
T ss_dssp             EEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTT
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccch
Confidence                     111224567788999998886654332111                 1223333333333221   1111 


Q ss_pred             -------------hhhcCCccceecccccccccccCCCCCCccEEeccCCCCCcCCCCCCCCCCCCcEEEcCCCcccchh
Q 020238          231 -------------SIIHLSKLAYLKLSYCERLQSLPKLPCNLSELDAHHCTALESSPGLVFPSRDPQYFDLRNNLKLDRN  297 (329)
Q Consensus       231 -------------~l~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~i~~~~~l~~~  297 (329)
                                   ....+++|++|++++|. ++.+|..+++|+.|++++|. ++.+|..   +.+|++|++++|+ ++..
T Consensus       266 ~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~~~~L~~L~L~~N~-L~~l~~~---~~~L~~L~L~~N~-L~~l  339 (353)
T d1jl5a_         266 LYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLERLIASFNH-LAEVPEL---PQNLKQLHVEYNP-LREF  339 (353)
T ss_dssp             CCEEECCSSCCSEECCCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSSC-CSCCCCC---CTTCCEEECCSSC-CSSC
T ss_pred             hcccccccCccccccccCCCCCEEECCCCc-cCccccccCCCCEEECCCCc-CCccccc---cCCCCEEECcCCc-CCCC
Confidence                         11235789999999975 67899889999999999986 6777754   3469999999996 6653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=1.5e-16  Score=125.58  Aligned_cols=161  Identities=19%  Similarity=0.311  Sum_probs=99.0

Q ss_pred             CCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEecc
Q 020238           66 LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLR  145 (329)
Q Consensus        66 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  145 (329)
                      ++++++|+++++.+. .++.+..+++|++|++++|.++.+++ ++.+++|++|++++|.... ++ .+.++++|+.++++
T Consensus        39 l~~l~~L~l~~~~i~-~l~~l~~l~nL~~L~Ls~N~l~~~~~-l~~l~~L~~L~l~~n~~~~-~~-~l~~l~~L~~L~l~  114 (199)
T d2omxa2          39 LDQVTTLQADRLGIK-SIDGVEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIAD-IT-PLANLTNLTGLTLF  114 (199)
T ss_dssp             HTTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEECC
T ss_pred             hcCCCEEECCCCCCC-CccccccCCCcCcCccccccccCccc-ccCCccccccccccccccc-cc-cccccccccccccc
Confidence            445555555554432 33444445556666666665555443 5666667777766655322 22 35566677777776


Q ss_pred             CCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcC
Q 020238          146 WCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNF  225 (329)
Q Consensus       146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i  225 (329)
                      ++.....  ..+..+++|+.+++++|.+..++.       +..+++++.|++.+|.+++++. ++.+++|+.|++++|++
T Consensus       115 ~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~~-------l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~i  184 (199)
T d2omxa2         115 NNQITDI--DPLKNLTNLNRLELSSNTISDISA-------LSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNKV  184 (199)
T ss_dssp             SSCCCCC--GGGTTCTTCSEEECCSSCCCCCGG-------GTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             ccccccc--cccchhhhhHHhhhhhhhhccccc-------ccccccccccccccccccCCcc-ccCCCCCCEEECCCCCC
Confidence            6544432  235566777777777776665432       3556777888888887777653 67778888888888887


Q ss_pred             ccCChhhhcCCcccee
Q 020238          226 ERLPESIIHLSKLAYL  241 (329)
Q Consensus       226 ~~~~~~l~~~~~L~~L  241 (329)
                      ++++ .++.+++|+.|
T Consensus       185 ~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         185 SDIS-VLAKLTNLESL  199 (199)
T ss_dssp             CCCG-GGGGCTTCSEE
T ss_pred             CCCc-cccCCCCCCcC
Confidence            7765 46677777654

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=1.5e-16  Score=126.78  Aligned_cols=165  Identities=28%  Similarity=0.387  Sum_probs=101.4

Q ss_pred             CCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEecc
Q 020238           66 LEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLR  145 (329)
Q Consensus        66 l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~  145 (329)
                      +.+|++|++++|.+. .++.+..+++|++|++++|.++.++. ++.+++|++|++++|.+. .++ .+..+++|+.++++
T Consensus        45 L~~L~~L~l~~~~i~-~l~~l~~l~~L~~L~L~~n~i~~l~~-~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIK-SVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLS-SLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCC-CCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGG-GGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCC-CchhHhhCCCCCEEeCCCccccCccc-cccCcccccccccccccc-ccc-cccccccccccccc
Confidence            445555565554332 33344445566666666665555442 455666666666665532 233 35556666666666


Q ss_pred             CCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcC
Q 020238          146 WCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNF  225 (329)
Q Consensus       146 ~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i  225 (329)
                      +|.... + ..+..++.++.++++++.+...+.       +..+++|+.+++++|.+++++. +..+++|+.|++++|++
T Consensus       121 ~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~~~-------~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i  190 (210)
T d1h6ta2         121 HNGISD-I-NGLVHLPQLESLYLGNNKITDITV-------LSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  190 (210)
T ss_dssp             TSCCCC-C-GGGGGCTTCCEEECCSSCCCCCGG-------GGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             cccccc-c-cccccccccccccccccccccccc-------cccccccccccccccccccccc-ccCCCCCCEEECCCCCC
Confidence            654432 2 245566667777777766654331       2446778888888887777653 67788888888888888


Q ss_pred             ccCChhhhcCCccceecccc
Q 020238          226 ERLPESIIHLSKLAYLKLSY  245 (329)
Q Consensus       226 ~~~~~~l~~~~~L~~L~l~~  245 (329)
                      +.++ .+..+++|++|++++
T Consensus       191 ~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         191 SDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CBCG-GGTTCTTCSEEEEEE
T ss_pred             CCCh-hhcCCCCCCEEEccC
Confidence            7775 577778888887764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=3e-16  Score=124.93  Aligned_cols=167  Identities=26%  Similarity=0.339  Sum_probs=131.4

Q ss_pred             cCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEEE
Q 020238           40 LHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSALY  119 (329)
Q Consensus        40 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~  119 (329)
                      ..+..|++|++++|.+.. ++ ++..+++|++|++++|.+. .++.+..+++|+.|++++|.++.++ .+..+++|+.|+
T Consensus        43 ~~L~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~L~~n~i~-~l~~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~  118 (210)
T d1h6ta2          43 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLT-DIKPLANLKNLGWLFLDENKVKDLS-SLKDLKKLKSLS  118 (210)
T ss_dssp             HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCCGG-GGTTCTTCCEEE
T ss_pred             HHhcCccEEECcCCCCCC-ch-hHhhCCCCCEEeCCCcccc-CccccccCccccccccccccccccc-cccccccccccc
Confidence            457788999998877544 32 4677889999999987654 4666777789999999999888776 478889999999


Q ss_pred             cCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCC
Q 020238          120 LDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTD  199 (329)
Q Consensus       120 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~  199 (329)
                      +.+|.... + ..+..+++++.+++++|....  +..+..+++|+.+++++|.+..++.       +.++++|+.|++++
T Consensus       119 l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i~~-------l~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         119 LEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDIVP-------LAGLTKLQNLYLSK  187 (210)
T ss_dssp             CTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCGG-------GTTCTTCCEEECCS
T ss_pred             cccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccccc-------ccCCCCCCEEECCC
Confidence            99877533 3 357788899999998876543  2346678899999999998876542       46789999999999


Q ss_pred             CCCCCcchhhcCCCCccEEEcCC
Q 020238          200 CGITELPENLGQLSLLLELYLEK  222 (329)
Q Consensus       200 ~~l~~~~~~~~~~~~L~~L~l~~  222 (329)
                      |.+++++ .+..+++|+.|++++
T Consensus       188 N~i~~l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         188 NHISDLR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             SCCCBCG-GGTTCTTCSEEEEEE
T ss_pred             CCCCCCh-hhcCCCCCCEEEccC
Confidence            9999886 588899999999864

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=1.1e-15  Score=120.46  Aligned_cols=164  Identities=18%  Similarity=0.274  Sum_probs=126.7

Q ss_pred             ccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCccccccchhhhcCCCCCEE
Q 020238           39 TLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIEELPSSIECLSGLSAL  118 (329)
Q Consensus        39 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L  118 (329)
                      ...++++++|++++|.+.. + .++..+++|++|++++|.+. .++.+..+++|+.|++++|.+..++. +..++.|+.+
T Consensus        36 ~~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~-~~~~l~~l~~L~~L~l~~n~~~~~~~-l~~l~~L~~L  111 (199)
T d2omxa2          36 QTDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLT-DITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGL  111 (199)
T ss_dssp             HHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred             HHHhcCCCEEECCCCCCCC-c-cccccCCCcCcCcccccccc-CcccccCCcccccccccccccccccc-cccccccccc
Confidence            3457788888888877543 3 34677888999999887644 45567778889999998888876653 7788999999


Q ss_pred             EcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcC
Q 020238          119 YLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLT  198 (329)
Q Consensus       119 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~  198 (329)
                      +++++.....  ..+..+++|+.+++++|... .+ ..+..+++++.|++.+|.+..++.       ++++++|++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~-~~-~~l~~~~~L~~L~l~~n~l~~l~~-------l~~l~~L~~L~ls  180 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTIS-DI-SALSGLTSLQQLNFSSNQVTDLKP-------LANLTTLERLDIS  180 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCC-CC-GGGTTCTTCSEEECCSSCCCCCGG-------GTTCTTCCEEECC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhc-cc-ccccccccccccccccccccCCcc-------ccCCCCCCEEECC
Confidence            9988765432  34677899999999987653 33 357788999999999998887642       5678999999999


Q ss_pred             CCCCCCcchhhcCCCCccEE
Q 020238          199 DCGITELPENLGQLSLLLEL  218 (329)
Q Consensus       199 ~~~l~~~~~~~~~~~~L~~L  218 (329)
                      +|++++++ .++.+++|+.|
T Consensus       181 ~N~i~~i~-~l~~L~~L~~L  199 (199)
T d2omxa2         181 SNKVSDIS-VLAKLTNLESL  199 (199)
T ss_dssp             SSCCCCCG-GGGGCTTCSEE
T ss_pred             CCCCCCCc-cccCCCCCCcC
Confidence            99999976 47788888875

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.9e-18  Score=140.62  Aligned_cols=178  Identities=19%  Similarity=0.265  Sum_probs=99.6

Q ss_pred             CCCcccEEeecCCCCCCC-Ccc-cCCCCCccEEEecCcccc-ccchhhhcCCCCCEEEcCCCCCccc--CCccccCCCCC
Q 020238           65 RLEFLKELDLWGCSKLKT-LPE-ISSAGNIEVMYLNGTAIE-ELPSSIECLSGLSALYLDHCKRLKS--LPSSLCKLKSL  139 (329)
Q Consensus        65 ~l~~L~~L~l~~~~~~~~-~~~-~~~~~~L~~L~l~~~~i~-~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L  139 (329)
                      ...+|++|++++|.+... +.. +..+++|++|+++++.+. ..+..++.+++|++|++++|...+.  +...+..+++|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L  123 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL  123 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhc
Confidence            345677777777654322 222 344577777777777665 3445566677777777777654332  22223456777


Q ss_pred             cEEeccCCCCCCC--CCcccC-CCccCcEEeccCcc--ccccChhhhhccccCCCCCccEEEcCCC-CCCC-cchhhcCC
Q 020238          140 NSIYLRWCSSLKS--LPNELG-NLEALNSLNAEGTA--IREVPLSIVRLNNFDGLQNLTSLYLTDC-GITE-LPENLGQL  212 (329)
Q Consensus       140 ~~L~l~~~~~~~~--~~~~~~-~l~~L~~L~l~~~~--l~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~-~~~~~~~~  212 (329)
                      ++|++++|...+.  +...+. ..+.|+.|+++++.  +.+.  .+..+  ...+++|++|++++| .+++ ....+..+
T Consensus       124 ~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~--~l~~l--~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKS--DLSTL--VRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHH--HHHHH--HHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             cccccccccccccccchhhhcccccccchhhhcccccccccc--ccccc--ccccccccccccccccCCCchhhhhhccc
Confidence            7777777654432  111122 23567777776542  2211  11110  234667777777765 3553 34455667


Q ss_pred             CCccEEEcCCC-cCc-cCChhhhcCCccceeccccc
Q 020238          213 SLLLELYLEKN-NFE-RLPESIIHLSKLAYLKLSYC  246 (329)
Q Consensus       213 ~~L~~L~l~~~-~i~-~~~~~l~~~~~L~~L~l~~~  246 (329)
                      ++|++|++++| .++ .....++++++|+.|++++|
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77777777775 454 33345566777777777766

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.9e-16  Score=125.31  Aligned_cols=213  Identities=15%  Similarity=0.143  Sum_probs=101.6

Q ss_pred             eEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCc--ccCCCCCccEEEe
Q 020238           20 KQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLP--EISSAGNIEVMYL   97 (329)
Q Consensus        20 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~~~~~~~L~~L~l   97 (329)
                      +.++.++.. ++..|.  .+  .+++++|++++|.+...-+..|.++++|++|++++|.+...++  .+..+++++.+.+
T Consensus        11 ~~i~c~~~~-l~~iP~--~l--~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          11 RVFLCQESK-VTEIPS--DL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SEEEEESCS-CSSCCS--CS--CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CEEEEeCCC-CCCcCC--CC--CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            344554433 445543  12  1356777777765443223345667777777777665554333  2334455555554


Q ss_pred             c-Ccccccc-chhhhcCCCCCEEEcCCCCCcccCCc-cccCCCCCcEEeccCCCCCCCCCcccCCCc-cCcEEeccCccc
Q 020238           98 N-GTAIEEL-PSSIECLSGLSALYLDHCKRLKSLPS-SLCKLKSLNSIYLRWCSSLKSLPNELGNLE-ALNSLNAEGTAI  173 (329)
Q Consensus        98 ~-~~~i~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l  173 (329)
                      . ++.+... +..+..+++|+++++.++.+....+. .+..+..+..+...++.....-+..+..++ .++.+++.++.+
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l  165 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  165 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccc
Confidence            4 2344322 33455666666666666554322111 122233333333333222222223333333 455566666666


Q ss_pred             cccChhhhhccccCCCCCccEE-EcCCCCCCCcchh-hcCCCCccEEEcCCCcCccCCh-hhhcCCccceecc
Q 020238          174 REVPLSIVRLNNFDGLQNLTSL-YLTDCGITELPEN-LGQLSLLLELYLEKNNFERLPE-SIIHLSKLAYLKL  243 (329)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~L~~L-~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l  243 (329)
                      ..++...     +. ..++..+ .+++|+++++|.. +..+++|+.|++++|+++.+|. .+.++++|+.+++
T Consensus       166 ~~i~~~~-----~~-~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         166 QEIHNCA-----FN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CEECTTT-----TT-TCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccc-----cc-chhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            5554433     11 2333333 3455556665443 4556666666666666665552 3444444544444

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=6.6e-16  Score=125.80  Aligned_cols=208  Identities=15%  Similarity=0.176  Sum_probs=147.1

Q ss_pred             CCchhhhhhhccCCCCceEEEecCCCCcccCCCcccccCcccCcEEeccCCCCCcccC-ccccCCCcccEEeecCCCCCC
Q 020238            3 HGNIQQLWDSVQHNGKLKQIISRASNFFTKSPNHSLTLHLDKLVNLNLNNCKSLRILP-PGIFRLEFLKELDLWGCSKLK   81 (329)
Q Consensus         3 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~   81 (329)
                      +.+++++|..+.  +++++|++++|+ +..++.. .+.++++|++|++++|.....++ ..+..++.++++.+..+....
T Consensus        17 ~~~l~~iP~~l~--~~l~~L~Ls~n~-i~~l~~~-~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~   92 (242)
T d1xwdc1          17 ESKVTEIPSDLP--RNAIELRFVLTK-LRVIQKG-AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   92 (242)
T ss_dssp             SCSCSSCCSCSC--SCCSEEEEESCC-CCEECTT-TTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC
T ss_pred             CCCCCCcCCCCC--CCCCEEECcCCc-CCccChh-Hhhccchhhhhhhccccccceeecccccccccccccccccccccc
Confidence            567888886653  589999999997 6666653 68899999999999998877554 457789999999987654443


Q ss_pred             CCc--ccCCCCCccEEEecCccccccch--hhhcCCCCCEEEcCCCCCcccCCccccCCC-CCcEEeccCCCCCCCCCcc
Q 020238           82 TLP--EISSAGNIEVMYLNGTAIEELPS--SIECLSGLSALYLDHCKRLKSLPSSLCKLK-SLNSIYLRWCSSLKSLPNE  156 (329)
Q Consensus        82 ~~~--~~~~~~~L~~L~l~~~~i~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~  156 (329)
                      ..+  .+..+++|+.++++++.+...+.  .+..+..++.+...++......+..+.+++ .++.+++.++... .++..
T Consensus        93 ~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~-~i~~~  171 (242)
T d1xwdc1          93 YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNC  171 (242)
T ss_dssp             EECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTT
T ss_pred             ccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccc-ccccc
Confidence            322  35667999999999998875543  233455555555555454443344555554 7889999886555 44444


Q ss_pred             cCCCccCcEE-eccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchh-hcCCCCccEEEc
Q 020238          157 LGNLEALNSL-NAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPEN-LGQLSLLLELYL  220 (329)
Q Consensus       157 ~~~l~~L~~L-~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l  220 (329)
                      .....+++.+ .+.++.++.++...     |.++++|+.|++++|+++++|.. +..++.|+.+++
T Consensus       172 ~~~~~~l~~~~~l~~n~l~~l~~~~-----f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         172 AFNGTQLDELNLSDNNNLEELPNDV-----FHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTTTCCEEEEECTTCTTCCCCCTTT-----TTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             cccchhhhccccccccccccccHHH-----hcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            3444555554 56778888888765     68899999999999999998753 444555555444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=5.1e-17  Score=135.62  Aligned_cols=216  Identities=19%  Similarity=0.174  Sum_probs=136.2

Q ss_pred             cEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCCCCccEEEecCcccc--ccchhhhcCCCCCEEEcCCC
Q 020238           46 VNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSAGNIEVMYLNGTAIE--ELPSSIECLSGLSALYLDHC  123 (329)
Q Consensus        46 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~L~~L~l~~~~i~--~~~~~~~~l~~L~~L~l~~~  123 (329)
                      +++|++++.........+.. ..+..+.++...............+|++|+++++.+.  .+...+..+++|++|++.+|
T Consensus         3 ~~lDLs~~~l~~~~l~~l~~-~~~~~lrl~~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~   81 (284)
T d2astb2           3 QTLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL   81 (284)
T ss_dssp             SEEECTTCBCCHHHHHHHHH-TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred             CEEECCCCCCCchHHHHHHh-ccceEeeccccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCccccccccc
Confidence            46888886654322211111 2344555555333222333334478999999988776  34556778899999999998


Q ss_pred             CCcccCCccccCCCCCcEEeccCCCCCCCC--CcccCCCccCcEEeccCcc-ccc--cChhhhhccccCCCCCccEEEcC
Q 020238          124 KRLKSLPSSLCKLKSLNSIYLRWCSSLKSL--PNELGNLEALNSLNAEGTA-IRE--VPLSIVRLNNFDGLQNLTSLYLT  198 (329)
Q Consensus       124 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~-l~~--~~~~~~~~~~~~~~~~L~~L~l~  198 (329)
                      .........+..+++|++|++++|...+..  ......+++|+.|+++++. +.+  +...+     ...+++|+.|+++
T Consensus        82 ~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~-----~~~~~~L~~L~l~  156 (284)
T d2astb2          82 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAV-----AHVSETITQLNLS  156 (284)
T ss_dssp             BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHH-----HHSCTTCCEEECC
T ss_pred             CCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhh-----cccccccchhhhc
Confidence            766666666778889999999987665431  1223457788888888753 332  11111     1235678888888


Q ss_pred             CC--CCCC--cchhhcCCCCccEEEcCCC-cCc-cCChhhhcCCccceecccccccccccC----CCCCCccEEeccCC
Q 020238          199 DC--GITE--LPENLGQLSLLLELYLEKN-NFE-RLPESIIHLSKLAYLKLSYCERLQSLP----KLPCNLSELDAHHC  267 (329)
Q Consensus       199 ~~--~l~~--~~~~~~~~~~L~~L~l~~~-~i~-~~~~~l~~~~~L~~L~l~~~~~l~~~~----~~~~~L~~L~l~~c  267 (329)
                      ++  .+++  +...+..+++|++|++++| .++ .....+.++++|++|++++|..+++-.    ..+++|+.|++++|
T Consensus       157 ~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         157 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            75  3443  4444566788888888876 455 445667778888888888877654322    23467777777776

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=1.4e-15  Score=119.21  Aligned_cols=168  Identities=20%  Similarity=0.188  Sum_probs=113.8

Q ss_pred             cEEEecCccccccchhhhcCCCCCEEEcCCCCCcccC-CccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCc
Q 020238           93 EVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSL-PSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGT  171 (329)
Q Consensus        93 ~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~  171 (329)
                      +.++.+++.++.+|..+  .+++++|++++|.+...+ +..|.++++|+.|++++|......+..+..+++|+.|++++|
T Consensus        11 ~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence            35566666666666654  257888888887775533 455677888888888887777776777888888888888888


Q ss_pred             cccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCChhhhcCCccceeccccccccc
Q 020238          172 AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLPESIIHLSKLAYLKLSYCERLQ  250 (329)
Q Consensus       172 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~~~l~~~~~L~~L~l~~~~~l~  250 (329)
                      .+..++...     |+++++|++|+|++|.++.++. .+..+++|+++++++|.+........-...++...+..+....
T Consensus        89 ~l~~l~~~~-----F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c  163 (192)
T d1w8aa_          89 KIKEISNKM-----FLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC  163 (192)
T ss_dssp             CCCEECSSS-----STTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB
T ss_pred             cccccCHHH-----HhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEe
Confidence            888877665     6778888888888888888655 4667888999999888876433222222335555555544333


Q ss_pred             ccCCCCCCccEEeccCC
Q 020238          251 SLPKLPCNLSELDAHHC  267 (329)
Q Consensus       251 ~~~~~~~~L~~L~l~~c  267 (329)
                      ..|..+..++.++++.+
T Consensus       164 ~~p~~l~~~~l~~L~~n  180 (192)
T d1w8aa_         164 GAPSKVRDVQIKDLPHS  180 (192)
T ss_dssp             CSSTTTTTSBGGGSCTT
T ss_pred             CCChhhcCCEeeecCHh
Confidence            44444444444444443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.53  E-value=2.4e-14  Score=112.06  Aligned_cols=149  Identities=17%  Similarity=0.073  Sum_probs=100.2

Q ss_pred             CCccEEEecCccccc-c-chhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEe
Q 020238           90 GNIEVMYLNGTAIEE-L-PSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLN  167 (329)
Q Consensus        90 ~~L~~L~l~~~~i~~-~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~  167 (329)
                      +++++|++++|.++. + +..+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..|.++++|+.|+
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~  108 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccc
Confidence            456667777776653 3 34467788888888888777766677777888888888888766655556688888888888


Q ss_pred             ccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc-cCChhhhcCCccceeccccc
Q 020238          168 AEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE-RLPESIIHLSKLAYLKLSYC  246 (329)
Q Consensus       168 l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~-~~~~~l~~~~~L~~L~l~~~  246 (329)
                      +++|.++.++...     |..+++|+++++++|.+............++.+.+..+.++ ..|..   +..++.++++.+
T Consensus       109 L~~N~l~~i~~~~-----f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p~~---l~~~~l~~L~~n  180 (192)
T d1w8aa_         109 LYDNQISCVMPGS-----FEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSK---VRDVQIKDLPHS  180 (192)
T ss_dssp             CCSSCCCEECTTS-----STTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTT---TTTSBGGGSCTT
T ss_pred             cCCccccccCHHH-----hcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCChh---hcCCEeeecCHh
Confidence            8888888877665     67788888888888877643221111223455555566555 45533   334455556553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.2e-14  Score=107.84  Aligned_cols=127  Identities=20%  Similarity=0.185  Sum_probs=81.4

Q ss_pred             hcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCC
Q 020238          110 ECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGL  189 (329)
Q Consensus       110 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~  189 (329)
                      .++.++++|++++|.+ +.++..+..+++|+.|++++|.+. .+ +.+..+++|+.|++++|.+..++..+     +..+
T Consensus        15 ~n~~~lr~L~L~~n~I-~~i~~~~~~l~~L~~L~Ls~N~i~-~l-~~~~~l~~L~~L~ls~N~i~~l~~~~-----~~~l   86 (162)
T d1a9na_          15 TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRICRIGEGL-----DQAL   86 (162)
T ss_dssp             ECTTSCEEEECTTSCC-CSCCCGGGGTTCCSEEECCSSCCC-EE-CCCCCCSSCCEEECCSSCCCEECSCH-----HHHC
T ss_pred             cCcCcCcEEECCCCCC-CccCccccccccCCEEECCCCCCC-cc-CCcccCcchhhhhcccccccCCCccc-----cccc
Confidence            3455566666666553 333444455666666666665443 23 23566677777777777777666544     3446


Q ss_pred             CCccEEEcCCCCCCCcch--hhcCCCCccEEEcCCCcCccCCh----hhhcCCccceeccc
Q 020238          190 QNLTSLYLTDCGITELPE--NLGQLSLLLELYLEKNNFERLPE----SIIHLSKLAYLKLS  244 (329)
Q Consensus       190 ~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~i~~~~~----~l~~~~~L~~L~l~  244 (329)
                      ++|++|++++|.+++++.  .+..+++|+.+++++|.++..+.    .+..+|+|+.||-.
T Consensus        87 ~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          87 PDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             TTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            778888888887777653  46677888888888888776653    46677788777643

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.5e-16  Score=136.83  Aligned_cols=300  Identities=15%  Similarity=0.107  Sum_probs=157.4

Q ss_pred             CCCchhhh--hhhccCCCCceEEEecCCCCcccCCC---cccccCcccCcEEeccCCCCCc----ccCccccC-CCcccE
Q 020238            2 PHGNIQQL--WDSVQHNGKLKQIISRASNFFTKSPN---HSLTLHLDKLVNLNLNNCKSLR----ILPPGIFR-LEFLKE   71 (329)
Q Consensus         2 ~~~~~~~l--~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~-l~~L~~   71 (329)
                      ++++++..  .+-+..+++++.|+|++|. +++...   ...+..+++|++|++++|.+..    .+...+.. ..+|++
T Consensus        10 ~~~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~   88 (460)
T d1z7xw1          10 QCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQK   88 (460)
T ss_dssp             ESCCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCE
T ss_pred             eCCcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCE
Confidence            44555442  2224567788888888886 432210   1145677888888888876532    12222222 346888


Q ss_pred             EeecCCCCCCCC----c-ccCCCCCccEEEecCcccccc-----ch-----------------------------hhhcC
Q 020238           72 LDLWGCSKLKTL----P-EISSAGNIEVMYLNGTAIEEL-----PS-----------------------------SIECL  112 (329)
Q Consensus        72 L~l~~~~~~~~~----~-~~~~~~~L~~L~l~~~~i~~~-----~~-----------------------------~~~~l  112 (329)
                      |++++|.+....    + .+...++|++|++++|.+...     ..                             .+...
T Consensus        89 L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  168 (460)
T d1z7xw1          89 LSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAK  168 (460)
T ss_dssp             EECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHC
T ss_pred             EECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccc
Confidence            888887754331    1 345567888888887766411     00                             01223


Q ss_pred             CCCCEEEcCCCCCccc----CC-----------------------------ccccCCCCCcEEeccCCCCCCC-----CC
Q 020238          113 SGLSALYLDHCKRLKS----LP-----------------------------SSLCKLKSLNSIYLRWCSSLKS-----LP  154 (329)
Q Consensus       113 ~~L~~L~l~~~~~~~~----~~-----------------------------~~~~~l~~L~~L~l~~~~~~~~-----~~  154 (329)
                      +.++.+.++++.....    ..                             ..+...+.++.+.+.++.....     ..
T Consensus       169 ~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~  248 (460)
T d1z7xw1         169 PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP  248 (460)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhc
Confidence            4555555554332110    00                             0011233444444444322110     11


Q ss_pred             cccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-----cchhh-cCCCCccEEEcCCCcCcc-
Q 020238          155 NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-----LPENL-GQLSLLLELYLEKNNFER-  227 (329)
Q Consensus       155 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~-~~~~~L~~L~l~~~~i~~-  227 (329)
                      ........++.++++++.+...+... ....+...+.++.+++++|.+++     +...+ .....|+.+++++|.++. 
T Consensus       249 ~~~~~~~~l~~l~l~~n~i~~~~~~~-~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~  327 (460)
T d1z7xw1         249 GLLHPSSRLRTLWIWECGITAKGCGD-LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAA  327 (460)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHH-HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccccccccccccccccchhhccccccccccccccccccchhhh
Confidence            12233455666666666554221110 00002335667777777776653     11112 234568888888887652 


Q ss_pred             ----CChhhhcCCccceeccccccccc----cc----CCCCCCccEEeccCCCCCc----CCCCCCCCCCCCcEEEcCCC
Q 020238          228 ----LPESIIHLSKLAYLKLSYCERLQ----SL----PKLPCNLSELDAHHCTALE----SSPGLVFPSRDPQYFDLRNN  291 (329)
Q Consensus       228 ----~~~~l~~~~~L~~L~l~~~~~l~----~~----~~~~~~L~~L~l~~c~~l~----~~~~~~~~~~~L~~L~i~~~  291 (329)
                          +...+..+++|++|++++|..-.    .+    ....+.|++|++++|....    .++..+..+++|++|++++|
T Consensus       328 ~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N  407 (460)
T d1z7xw1         328 CCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN  407 (460)
T ss_dssp             GHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSS
T ss_pred             hhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCC
Confidence                22334456678888888875311    11    1334568888888886321    12333445677888888887


Q ss_pred             cccchhHHHHHhh
Q 020238          292 LKLDRNEIREILE  304 (329)
Q Consensus       292 ~~l~~~~~~~~~~  304 (329)
                       ++++.....+..
T Consensus       408 -~i~~~g~~~l~~  419 (460)
T d1z7xw1         408 -CLGDAGILQLVE  419 (460)
T ss_dssp             -SCCHHHHHHHHH
T ss_pred             -cCCHHHHHHHHH
Confidence             677766655543

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=4.2e-15  Score=127.43  Aligned_cols=88  Identities=15%  Similarity=0.086  Sum_probs=42.6

Q ss_pred             cccCcccCcEEeccCCCCCc----ccCccccCCCcccEEeecCCCCCCCC-----------cccCCCCCccEEEecCccc
Q 020238           38 LTLHLDKLVNLNLNNCKSLR----ILPPGIFRLEFLKELDLWGCSKLKTL-----------PEISSAGNIEVMYLNGTAI  102 (329)
Q Consensus        38 ~~~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~~-----------~~~~~~~~L~~L~l~~~~i  102 (329)
                      .+.....|++|++++|.+..    .+...+...++|+.++++++......           ..+...++|+.|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            45555666666666665433    12333445566666666654322110           0122334555555555544


Q ss_pred             cc-----cchhhhcCCCCCEEEcCCCCC
Q 020238          103 EE-----LPSSIECLSGLSALYLDHCKR  125 (329)
Q Consensus       103 ~~-----~~~~~~~l~~L~~L~l~~~~~  125 (329)
                      ..     +...+...++|++|++++|.+
T Consensus       106 ~~~~~~~l~~~l~~~~~L~~L~l~~n~l  133 (344)
T d2ca6a1         106 GPTAQEPLIDFLSKHTPLEHLYLHNNGL  133 (344)
T ss_dssp             CTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred             ccccccchhhhhcccccchheecccccc
Confidence            31     223334455566666655543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.4e-14  Score=107.10  Aligned_cols=129  Identities=16%  Similarity=0.100  Sum_probs=86.2

Q ss_pred             ccCCCCCccEEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCc
Q 020238           85 EISSAGNIEVMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALN  164 (329)
Q Consensus        85 ~~~~~~~L~~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~  164 (329)
                      .+.+..+++.|++++|.|+.++..+..+++|++|++++|.+.. + +.+..+++|++|++++|......+..+..+++|+
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            3444456667777777777666555667777777777776543 3 2366677788888877665443333345677888


Q ss_pred             EEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch----hhcCCCCccEEE
Q 020238          165 SLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE----NLGQLSLLLELY  219 (329)
Q Consensus       165 ~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~----~~~~~~~L~~L~  219 (329)
                      .|++++|.+..++..    ..++.+++|++|++++|.+++.+.    .+..+|+|+.||
T Consensus        91 ~L~L~~N~i~~~~~l----~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDL----DPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGG----GGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccc----cccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            888888877765431    114667888888888888877553    466788888886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.46  E-value=1.9e-14  Score=123.21  Aligned_cols=240  Identities=14%  Similarity=0.174  Sum_probs=150.7

Q ss_pred             hhhhhhhccCCCCceEEEecCCCCcccCC-C--cccccCcccCcEEeccCCCCCc----------ccCccccCCCcccEE
Q 020238            6 IQQLWDSVQHNGKLKQIISRASNFFTKSP-N--HSLTLHLDKLVNLNLNNCKSLR----------ILPPGIFRLEFLKEL   72 (329)
Q Consensus         6 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~-~--~~~~~~~~~L~~L~l~~~~~~~----------~~~~~~~~l~~L~~L   72 (329)
                      +..+...+.....++.|++++|. +.... .  ...+...++|+.++++++....          .+...+..+++|++|
T Consensus        20 ~~~l~~~L~~~~~l~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L   98 (344)
T d2ca6a1          20 EKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV   98 (344)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTSE-ECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred             HHHHHHHHhhCCCCCEEECcCCc-CCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccc
Confidence            34455566778999999999986 33221 0  1146678999999999865322          122345568899999


Q ss_pred             eecCCCCCCCCc-----ccCCCCCccEEEecCccccc-----cchh---------hhcCCCCCEEEcCCCCCccc----C
Q 020238           73 DLWGCSKLKTLP-----EISSAGNIEVMYLNGTAIEE-----LPSS---------IECLSGLSALYLDHCKRLKS----L  129 (329)
Q Consensus        73 ~l~~~~~~~~~~-----~~~~~~~L~~L~l~~~~i~~-----~~~~---------~~~l~~L~~L~l~~~~~~~~----~  129 (329)
                      ++++|.+.....     .+...++|+.|+++++.+..     +...         ....+.|+.+.++++.+...    +
T Consensus        99 ~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l  178 (344)
T d2ca6a1          99 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW  178 (344)
T ss_dssp             ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred             cccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccc
Confidence            999987654321     23345899999999988751     1111         23467888999888765432    2


Q ss_pred             CccccCCCCCcEEeccCCCCCCC-----CCcccCCCccCcEEeccCccccccCh-hhhhccccCCCCCccEEEcCCCCCC
Q 020238          130 PSSLCKLKSLNSIYLRWCSSLKS-----LPNELGNLEALNSLNAEGTAIREVPL-SIVRLNNFDGLQNLTSLYLTDCGIT  203 (329)
Q Consensus       130 ~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~  203 (329)
                      ...+...+.++.+++++|.....     +...+..+++|+.|++++|.+..... .+.  ..+..+++|++|++++|.++
T Consensus       179 ~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~--~~l~~~~~L~~L~Ls~n~i~  256 (344)
T d2ca6a1         179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA--IALKSWPNLRELGLNDCLLS  256 (344)
T ss_dssp             HHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH--HHGGGCTTCCEEECTTCCCC
T ss_pred             cchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc--ccccccccchhhhhhcCccC
Confidence            33455677888888888765431     22345566778888888777653211 111  11455777888888888777


Q ss_pred             C-----cchhhcC--CCCccEEEcCCCcCc-----cCChhhh-cCCccceeccccccc
Q 020238          204 E-----LPENLGQ--LSLLLELYLEKNNFE-----RLPESII-HLSKLAYLKLSYCER  248 (329)
Q Consensus       204 ~-----~~~~~~~--~~~L~~L~l~~~~i~-----~~~~~l~-~~~~L~~L~l~~~~~  248 (329)
                      +     +...+..  .+.|++|++++|+|+     .+...+. +++.|+.|++++|+.
T Consensus       257 ~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~  314 (344)
T d2ca6a1         257 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF  314 (344)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred             chhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcC
Confidence            5     2223332  356778888888775     2233343 456677777776553

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1.8e-12  Score=93.35  Aligned_cols=86  Identities=24%  Similarity=0.288  Sum_probs=38.7

Q ss_pred             ccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcc--hhhc
Q 020238          133 LCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP--ENLG  210 (329)
Q Consensus       133 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--~~~~  210 (329)
                      +..+++|++|++++|.. +.+|..+..+++|+.|++++|.++.++.       +..+++|++|++++|.+++++  ..+.
T Consensus        16 l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~~l~~-------~~~l~~L~~L~l~~N~i~~~~~~~~l~   87 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALENVDG-------VANLPRLQELLLCNNRLQQSAAIQPLV   87 (124)
T ss_dssp             GGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCCCCGG-------GTTCSSCCEEECCSSCCCSSSTTGGGG
T ss_pred             cccCCCCCEEECCCCcc-CcchhhhhhhhcccccccccccccccCc-------cccccccCeEECCCCccCCCCCchhhc
Confidence            33444444444444322 2333334444444444444444443321       233455555555555555433  2344


Q ss_pred             CCCCccEEEcCCCcCc
Q 020238          211 QLSLLLELYLEKNNFE  226 (329)
Q Consensus       211 ~~~~L~~L~l~~~~i~  226 (329)
                      .+++|+.+++++|+++
T Consensus        88 ~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          88 SCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             GCTTCCEEECTTSGGG
T ss_pred             CCCCCCEEECCCCcCC
Confidence            4555555555555554

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.38  E-value=1.8e-12  Score=93.27  Aligned_cols=117  Identities=19%  Similarity=0.183  Sum_probs=57.5

Q ss_pred             EEEecCccccccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccc
Q 020238           94 VMYLNGTAIEELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAI  173 (329)
Q Consensus        94 ~L~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l  173 (329)
                      .|++++|.++.++ .+..+++|++|++++|.+ +.+|..+..+++|+.|++++|... .++ .+..+++|+.+++++|.+
T Consensus         2 ~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l-~~lp~~~~~l~~L~~L~l~~N~i~-~l~-~~~~l~~L~~L~l~~N~i   77 (124)
T d1dcea3           2 VLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRL   77 (124)
T ss_dssp             EEECTTSCCSSCC-CGGGGTTCCEEECCSSCC-CCCCGGGGGCTTCCEEECCSSCCC-CCG-GGTTCSSCCEEECCSSCC
T ss_pred             EEEcCCCCCCCCc-ccccCCCCCEEECCCCcc-Ccchhhhhhhhccccccccccccc-ccC-ccccccccCeEECCCCcc
Confidence            4455555554443 245555555555555443 334444555555555555554333 222 345555666666666655


Q ss_pred             cccChhhhhccccCCCCCccEEEcCCCCCCCc---ch-hhcCCCCccEE
Q 020238          174 REVPLSIVRLNNFDGLQNLTSLYLTDCGITEL---PE-NLGQLSLLLEL  218 (329)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~---~~-~~~~~~~L~~L  218 (329)
                      ..++.. ..   +..+++|+.|++++|.+++.   +. ....+|+|+.+
T Consensus        78 ~~~~~~-~~---l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAI-QP---LVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTT-GG---GGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCc-hh---hcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            544321 00   34456666666666655532   12 22335555554

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=6e-14  Score=124.35  Aligned_cols=292  Identities=20%  Similarity=0.191  Sum_probs=180.1

Q ss_pred             hhhhhhhccCCCCceEEEecCCCCcccCCCcc---cc-cCcccCcEEeccCCCCCcc----cCccccCCCcccEEeecCC
Q 020238            6 IQQLWDSVQHNGKLKQIISRASNFFTKSPNHS---LT-LHLDKLVNLNLNNCKSLRI----LPPGIFRLEFLKELDLWGC   77 (329)
Q Consensus         6 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~---~~-~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~   77 (329)
                      ++.+...+..+++|++|++++|. +++.....   .+ ....+|++|++++|.+...    ++..+..+++|++|++++|
T Consensus        44 ~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          44 CKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             HHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence            34566667899999999999987 43221100   11 2235799999999986542    4556778999999999987


Q ss_pred             CCCCC----------------------Cc------------ccCCCCCccEEEecCccccc-------------------
Q 020238           78 SKLKT----------------------LP------------EISSAGNIEVMYLNGTAIEE-------------------  104 (329)
Q Consensus        78 ~~~~~----------------------~~------------~~~~~~~L~~L~l~~~~i~~-------------------  104 (329)
                      .+...                      .+            .+.....++.+.++++.+..                   
T Consensus       123 ~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~  202 (460)
T d1z7xw1         123 LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEA  202 (460)
T ss_dssp             BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCE
T ss_pred             cchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccccccc
Confidence            54210                      00            01112345555555433210                   


Q ss_pred             ---------------cchhhhcCCCCCEEEcCCCCCccc-----CCccccCCCCCcEEeccCCCCCCCC----CcccCCC
Q 020238          105 ---------------LPSSIECLSGLSALYLDHCKRLKS-----LPSSLCKLKSLNSIYLRWCSSLKSL----PNELGNL  160 (329)
Q Consensus       105 ---------------~~~~~~~l~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~~~----~~~~~~l  160 (329)
                                     ....+...+.++.+.+.++.....     ..........++.+++++|......    ...+...
T Consensus       203 l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~  282 (460)
T d1z7xw1         203 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK  282 (460)
T ss_dssp             EECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHC
T ss_pred             cccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccccccccccccccccccccc
Confidence                           011234567788888887665322     1222345678999999997665331    2234557


Q ss_pred             ccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcCc-----cCCh
Q 020238          161 EALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNFE-----RLPE  230 (329)
Q Consensus       161 ~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i~-----~~~~  230 (329)
                      +.++.+++++|.+.........-........|+.++++++.++.     +...+...++|++|++++|+++     .+.+
T Consensus       283 ~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~  362 (460)
T d1z7xw1         283 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ  362 (460)
T ss_dssp             TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred             ccccccccccccccccccchhhccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhh
Confidence            78999999999876321111000002345689999999998875     2334556789999999999986     2334


Q ss_pred             hhh-cCCccceecccccccccc-----cC---CCCCCccEEeccCCCCCcC----CCCCCC-CCCCCcEEEcCCCcccch
Q 020238          231 SII-HLSKLAYLKLSYCERLQS-----LP---KLPCNLSELDAHHCTALES----SPGLVF-PSRDPQYFDLRNNLKLDR  296 (329)
Q Consensus       231 ~l~-~~~~L~~L~l~~~~~l~~-----~~---~~~~~L~~L~l~~c~~l~~----~~~~~~-~~~~L~~L~i~~~~~l~~  296 (329)
                      .+. ..+.|++|++++|. +++     ++   ...++|++|++++|..-..    +...+. ....|+.|++.++.- .+
T Consensus       363 ~l~~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~-~~  440 (460)
T d1z7xw1         363 GLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW-SE  440 (460)
T ss_dssp             HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCC-CH
T ss_pred             hhhcccCCCCEEECCCCC-CChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCC-CH
Confidence            443 46779999999986 432     22   2247899999999963221    111111 334699999999643 34


Q ss_pred             hHHH
Q 020238          297 NEIR  300 (329)
Q Consensus       297 ~~~~  300 (329)
                      ....
T Consensus       441 ~~~~  444 (460)
T d1z7xw1         441 EMED  444 (460)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            3333

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.22  E-value=7.2e-14  Score=109.59  Aligned_cols=144  Identities=17%  Similarity=0.183  Sum_probs=85.1

Q ss_pred             CceEEEecCCC-CcccCCCcccccCcccCcEEeccCCCCCcccCccccCCCcccEEeecCCCCCCCCcccCCC-CCccEE
Q 020238           18 KLKQIISRASN-FFTKSPNHSLTLHLDKLVNLNLNNCKSLRILPPGIFRLEFLKELDLWGCSKLKTLPEISSA-GNIEVM   95 (329)
Q Consensus        18 ~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-~~L~~L   95 (329)
                      ..+.+++++.. .+...+.  .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .++.+... ++|+.|
T Consensus        24 ~~~~~~l~~~~~~i~~l~~--sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          24 EAEKVELHGMIPPIEKMDA--TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEEL   98 (198)
T ss_dssp             TCSCEECCBCCTTCCCCHH--HHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEE
T ss_pred             ccceeeeecccCchhhhhh--HHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccc-ccccccccccccccc
Confidence            45555555432 2332222  56677777777777766443 33 4666777777777776543 44433332 567777


Q ss_pred             EecCccccccchhhhcCCCCCEEEcCCCCCcccC-CccccCCCCCcEEeccCCCCCCCCCc----------ccCCCccCc
Q 020238           96 YLNGTAIEELPSSIECLSGLSALYLDHCKRLKSL-PSSLCKLKSLNSIYLRWCSSLKSLPN----------ELGNLEALN  164 (329)
Q Consensus        96 ~l~~~~i~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~----------~~~~l~~L~  164 (329)
                      ++++|.++.++ .+..+++|++|++++|.+.... ...+..+++|+.|++++|+.....+.          .+..+++|+
T Consensus        99 ~l~~N~i~~l~-~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_          99 WISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             ECSEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             ccccccccccc-cccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence            77777777653 3666777778877776653321 13466777788888777654332211          134567777


Q ss_pred             EEe
Q 020238          165 SLN  167 (329)
Q Consensus       165 ~L~  167 (329)
                      .|+
T Consensus       178 ~LD  180 (198)
T d1m9la_         178 KLD  180 (198)
T ss_dssp             EES
T ss_pred             EeC
Confidence            765

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.21  E-value=1.9e-13  Score=107.10  Aligned_cols=114  Identities=23%  Similarity=0.258  Sum_probs=73.9

Q ss_pred             cccchhhhcCCCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCCcccCCCccCcEEeccCccccccChhhhh
Q 020238          103 EELPSSIECLSGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLPNELGNLEALNSLNAEGTAIREVPLSIVR  182 (329)
Q Consensus       103 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~  182 (329)
                      ..++..+..+++|++|++++|.+. .++ .+..+++|+.|++++|.. +.++..+..+++|+.|++++|.+..++.    
T Consensus        38 ~~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i-~~i~~~~~~~~~L~~L~l~~N~i~~l~~----  110 (198)
T d1m9la_          38 EKMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIASLSG----  110 (198)
T ss_dssp             CCCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEE-CSCSSHHHHHHHCCEEECSEEECCCHHH----
T ss_pred             hhhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccc-cccccccccccccccccccccccccccc----
Confidence            345566777777777777776643 343 466677777777777543 3444433444567777777777765432    


Q ss_pred             ccccCCCCCccEEEcCCCCCCCcc--hhhcCCCCccEEEcCCCcCc
Q 020238          183 LNNFDGLQNLTSLYLTDCGITELP--ENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       183 ~~~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~~L~~L~l~~~~i~  226 (329)
                         +..+++|+.|++++|.+++++  ..+..+++|+.|++++|.+.
T Consensus       111 ---~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         111 ---IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             ---HHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ---ccccccccccccccchhccccccccccCCCccceeecCCCccc
Confidence               233567777788777777764  34667777888888877665

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=2e-10  Score=85.93  Aligned_cols=108  Identities=23%  Similarity=0.188  Sum_probs=70.7

Q ss_pred             CCCCEEEcCCCCCcccCCccccCCCCCcEEeccCCCCCCCCC-cccCCCccCcEEeccCccccccChhhhhccccCCCCC
Q 020238          113 SGLSALYLDHCKRLKSLPSSLCKLKSLNSIYLRWCSSLKSLP-NELGNLEALNSLNAEGTAIREVPLSIVRLNNFDGLQN  191 (329)
Q Consensus       113 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~  191 (329)
                      .....++..++.. ...|..+..++++++|++.+++.++.++ ..|.++++|+.|++++|+++.++...     |..+++
T Consensus         8 ~~~~~l~c~~~~~-~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~-----f~~l~~   81 (156)
T d2ifga3           8 HGSSGLRCTRDGA-LDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA-----FHFTPR   81 (156)
T ss_dssp             SSSSCEECCSSCC-CTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTG-----GGSCSC
T ss_pred             CCCCeEEecCCCC-ccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccc-----cccccc
Confidence            3445566666443 3445556667777777777655555544 45677777777777777777665544     566777


Q ss_pred             ccEEEcCCCCCCCcchhhcCCCCccEEEcCCCcCc
Q 020238          192 LTSLYLTDCGITELPENLGQLSLLLELYLEKNNFE  226 (329)
Q Consensus       192 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~i~  226 (329)
                      |+.|++++|.++.++........|+.|++++|.+.
T Consensus        82 L~~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          82 LSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             CCEEECCSSCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ccceeccCCCCcccChhhhccccccccccCCCccc
Confidence            77777777777776665555556777777777664

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.7e-10  Score=85.20  Aligned_cols=90  Identities=23%  Similarity=0.225  Sum_probs=43.2

Q ss_pred             CCcccCCCccCcEEeccCc-cccccChhhhhccccCCCCCccEEEcCCCCCCCcc-hhhcCCCCccEEEcCCCcCccCCh
Q 020238          153 LPNELGNLEALNSLNAEGT-AIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELP-ENLGQLSLLLELYLEKNNFERLPE  230 (329)
Q Consensus       153 ~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~i~~~~~  230 (329)
                      .|..+..+++|+.|++.++ .++.++...     |.++++|+.|++++|.++.++ ..+..+++|+.|+|++|+++.++.
T Consensus        23 ~p~~l~~l~~l~~L~l~~n~~l~~i~~~~-----f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~   97 (156)
T d2ifga3          23 SLHHLPGAENLTELYIENQQHLQHLELRD-----LRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSW   97 (156)
T ss_dssp             TTTTSCSCSCCSEEECCSCSSCCEECGGG-----SCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCS
T ss_pred             CcccccCccccCeeecCCCccccccCchh-----hccccccCcceeeccccCCcccccccccccccceeccCCCCcccCh
Confidence            3444444455555555433 244444333     344555555555555555542 234445555555555555555544


Q ss_pred             hhhcCCccceecccccc
Q 020238          231 SIIHLSKLAYLKLSYCE  247 (329)
Q Consensus       231 ~l~~~~~L~~L~l~~~~  247 (329)
                      .......|+.|++++|+
T Consensus        98 ~~~~~~~l~~L~L~~Np  114 (156)
T d2ifga3          98 KTVQGLSLQELVLSGNP  114 (156)
T ss_dssp             TTTCSCCCCEEECCSSC
T ss_pred             hhhccccccccccCCCc
Confidence            33333345555555543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.8e-07  Score=69.90  Aligned_cols=62  Identities=24%  Similarity=0.145  Sum_probs=41.3

Q ss_pred             CCCCccEEEcCCCCCCCc---chhhcCCCCccEEEcCCCcCccCCh-hhhcCCccceecccccccc
Q 020238          188 GLQNLTSLYLTDCGITEL---PENLGQLSLLLELYLEKNNFERLPE-SIIHLSKLAYLKLSYCERL  249 (329)
Q Consensus       188 ~~~~L~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~i~~~~~-~l~~~~~L~~L~l~~~~~l  249 (329)
                      .+++|+.|++++|.++++   +..+..+++|+.|++++|.|+++++ .......|+.+++++|+..
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~  128 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS  128 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence            467777788888777764   3345567778888888887776653 2233446777777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.94  E-value=3.9e-06  Score=62.69  Aligned_cols=37  Identities=14%  Similarity=0.051  Sum_probs=20.2

Q ss_pred             CCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcCCCcC
Q 020238          189 LQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLEKNNF  225 (329)
Q Consensus       189 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~~~~i  225 (329)
                      .+.|++|++++|.+++     +...+...+.|++|++++|.+
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcC
Confidence            4556666666665553     223344555666666665543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=4e-06  Score=62.26  Aligned_cols=81  Identities=22%  Similarity=0.145  Sum_probs=47.9

Q ss_pred             CCccCcEEeccCccccccChhhhhccccCCCCCccEEEcCCCCCCCcch-hhcCCCCccEEEcCCCcCccCC--------
Q 020238          159 NLEALNSLNAEGTAIREVPLSIVRLNNFDGLQNLTSLYLTDCGITELPE-NLGQLSLLLELYLEKNNFERLP--------  229 (329)
Q Consensus       159 ~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~i~~~~--------  229 (329)
                      .++.|+.|++++|.++.++.....   +..+++|+.|++++|.+++++. .......|+.+++++|.+....        
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~---~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSI---VQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTH---HHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHH---HhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            456666666666666654321111   2346777777777777777654 2233446788888888776322        


Q ss_pred             hhhhcCCccceec
Q 020238          230 ESIIHLSKLAYLK  242 (329)
Q Consensus       230 ~~l~~~~~L~~L~  242 (329)
                      ..+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence            1244566777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.77  E-value=2.1e-05  Score=58.59  Aligned_cols=17  Identities=0%  Similarity=-0.175  Sum_probs=11.5

Q ss_pred             CCCCCCCCcEEEcCCCc
Q 020238          276 LVFPSRDPQYFDLRNNL  292 (329)
Q Consensus       276 ~~~~~~~L~~L~i~~~~  292 (329)
                      .+...+.|++|+++.+.
T Consensus       126 ~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         126 AIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHCSSCCEEECCCCC
T ss_pred             HHHhCCCccEeeCcCCC
Confidence            33446678888887763

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.50  E-value=2.1e-05  Score=58.52  Aligned_cols=119  Identities=8%  Similarity=0.017  Sum_probs=66.3

Q ss_pred             Cchhhhhhh-ccCCCCceEEEecCCCCcccCCC---cccccCcccCcEEeccCCCCCcc----cCccccCCCcccEEeec
Q 020238            4 GNIQQLWDS-VQHNGKLKQIISRASNFFTKSPN---HSLTLHLDKLVNLNLNNCKSLRI----LPPGIFRLEFLKELDLW   75 (329)
Q Consensus         4 ~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~   75 (329)
                      .+|+++-.. ....++|++|++++++.++....   ...+..+++|++|++++|.+...    +...+...+.++.++++
T Consensus         3 ~~i~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~   82 (166)
T d1io0a_           3 TDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVE   82 (166)
T ss_dssp             CCHHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred             ccHHHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhc
Confidence            456664333 35678999999987554433221   12455778899999998876543    33344556778888887


Q ss_pred             CCCCCCCC-----cccCCCCCccEEEec--Ccccc-----ccchhhhcCCCCCEEEcCC
Q 020238           76 GCSKLKTL-----PEISSAGNIEVMYLN--GTAIE-----ELPSSIECLSGLSALYLDH  122 (329)
Q Consensus        76 ~~~~~~~~-----~~~~~~~~L~~L~l~--~~~i~-----~~~~~~~~l~~L~~L~l~~  122 (329)
                      +|......     ..+...++|+.++++  ++.+.     .+...+...+.|+.|++..
T Consensus        83 ~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          83 SNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             SSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            76654221     123333555544443  33333     2233344455555555544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.31  E-value=6.4e-05  Score=55.71  Aligned_cols=57  Identities=19%  Similarity=0.236  Sum_probs=26.7

Q ss_pred             CCCccEEEcCCCCCCC-----cchhhcCCCCccEEEcC--CCcCc-----cCChhhhcCCccceecccc
Q 020238          189 LQNLTSLYLTDCGITE-----LPENLGQLSLLLELYLE--KNNFE-----RLPESIIHLSKLAYLKLSY  245 (329)
Q Consensus       189 ~~~L~~L~l~~~~l~~-----~~~~~~~~~~L~~L~l~--~~~i~-----~~~~~l~~~~~L~~L~l~~  245 (329)
                      .++++.+++++|.+++     +...+...+.|+.++++  +|.+.     .+...+..++.|+.|++..
T Consensus        73 ~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          73 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             cccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            4455555555555543     22334445555554443  33343     2223344455555555543